BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005642
         (686 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
 gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/680 (58%), Positives = 492/680 (72%), Gaps = 100/680 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD  +  LAR LQS NT HSIH GKQLH+ F KKG++ STL +ANRLLQMY RCG+ TDA
Sbjct: 1   MDLDLQNLARFLQSLNTPHSIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDA 60

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--------------- 105
             LFDEMP RNCFSWN MIEG+MK G+KE+S++LF++M  KND+S               
Sbjct: 61  HKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEME 120

Query: 106 ----------------WNMLISGFAK---------------------------------- 115
                           WN +I  +A+                                  
Sbjct: 121 IARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIG 180

Query: 116 --ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
              DL  ++ GKQIH+ IL++ ++ DSVL SSL+NLYGKCGD +SA+ VLN M+EPDDF 
Sbjct: 181 ACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFS 240

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           LSALI+GYAN G+MNDARR F R +++  V+WNS+ISGY++NNE+ EA LLF+ M++ G+
Sbjct: 241 LSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGL 300

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
             D STLA++LSACSSL   +HGKQ+H +ACKVG+I D +VASA +D YSK G  +DACK
Sbjct: 301 KVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACK 360

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LFSELK YDTILLN+MITVYS+ G+IEDAK IF TMP+KSLISWNSMIVGLSQNG P+EA
Sbjct: 361 LFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEA 420

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           LDLFC MNKLDLRM++F+L SVISACA+ISSLELGEQ+FAR T++GLDSD++ISTSLVDF
Sbjct: 421 LDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDF 480

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           YCKCG+                                 +AL LFNEMR+ GV+PT ITF
Sbjct: 481 YCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITF 540

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           T +LSACDHCGLVKEG +WF+ M++ YHIDP IEHYSCMVDLFARAGCL EA+NLI++MP
Sbjct: 541 TGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMP 600

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
           FEAD  MWSS+LRGC+AHG+K LG KVA+++IELDPEN+ AY+QLSSIFATSG+WE S+L
Sbjct: 601 FEADASMWSSVLRGCMAHGEKDLGEKVAQQIIELDPENSGAYVQLSSIFATSGDWESSAL 660

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +M+E+ V K PG SWA+
Sbjct: 661 VRKVMQERQVQKYPGYSWAN 680


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/681 (57%), Positives = 482/681 (70%), Gaps = 101/681 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TD 59
           MD  +  LARLLQS NTH SIH GKQLHL FLKKG++N+T+ +ANRLLQMY RCG   TD
Sbjct: 1   MDLELRSLARLLQSLNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTD 60

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW------------- 106
           A  LFDEMP RNCFSWN MIEG+M++G KE+SL+LF++MPQKND+SW             
Sbjct: 61  AHNLFDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGEL 120

Query: 107 ------------------NMLISGFAK--------------------------------- 115
                             N +I G+A+                                 
Sbjct: 121 DVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVI 180

Query: 116 ---ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
              ADL A+EYGKQ+H+ IL++ ++ DSVL SSL+NLY KCG  ++AN VL MM E DDF
Sbjct: 181 GACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDF 240

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
            LSALI GYANCG+M+DA R+F   ++   V+WNS+ISGY++N+E+ +A  L ++M+ N 
Sbjct: 241 SLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNR 300

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           V  D+ST+  +LSACSS G  ++ KQ+HG+ CKVG+ID VIVASA +D YSK   P+DAC
Sbjct: 301 VQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDAC 360

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
           KLFSELK YDT+LLN+MIT Y +CGRI DAK+IF TMP+KSLISWNS+IVGL+QN  P+E
Sbjct: 361 KLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLE 420

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           ALD+F  MNKLDLRMD+FSLASVISACA ISSLELGEQVFAR  I GL+SDQ +STSLVD
Sbjct: 421 ALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVD 480

Query: 413 FYCKCGY---------------------------------DALALFNEMRNTGVKPTIIT 439
           FYCKCG+                                 + L LFNEM+  G++PT IT
Sbjct: 481 FYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPTDIT 540

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           FT +LSACDHCGLV+EG+KWF+ MK+ YHIDP IEHYSCMVDLFARAGCL EA+NL+E M
Sbjct: 541 FTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHM 600

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           PFEAD  MWSS+LRGCVAHGDK LG+KVA+++I+L+PE++ AY+QLS IFATSG+WE S+
Sbjct: 601 PFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQLNPESSSAYVQLSGIFATSGDWESSA 660

Query: 560 LIRDIMREKHVGKLPGCSWAD 580
           L+R IM EK V K PG SWAD
Sbjct: 661 LVRKIMTEKQVKKHPGFSWAD 681


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/683 (56%), Positives = 475/683 (69%), Gaps = 100/683 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC +  +A
Sbjct: 2   VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--------------- 105
             LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FS               
Sbjct: 62  QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 121

Query: 106 ----------------WNMLISGFAK---------------------------------- 115
                           WN +I G+A                                   
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 181

Query: 116 --ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
              +L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F 
Sbjct: 182 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 241

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           LSALISGYA+CG+MNDARR+F   ++   V+WNSMISGY++NNE  EAL LF+ MRR GV
Sbjct: 242 LSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGV 301

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
            ED ST ASVLSACS+LG ++ G QVH H  KVG  +D+I+ SAL+D YSK   P DACK
Sbjct: 302 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 361

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LFS+L+ YDTILLN+MITVYS+CGRI+DA+ IF TMP+KSLISWNSMIVG SQN  PIEA
Sbjct: 362 LFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEA 421

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 422 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 481

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           YCKCG                                  +AL +F++MR+ GV+PT ITF
Sbjct: 482 YCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITF 541

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSACDHCGLV+EG+KWF AMK  YHI+P IEHYSCMVDL+ARAG L +A+NLIEQMP
Sbjct: 542 VGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMP 601

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            +AD  MWSS+LRGCVAHG+  LG+KVA+R+I+LDPEN+ AY+QLS I+AT  +W +S+ 
Sbjct: 602 LKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQ 661

Query: 561 IRDIMREKHVGKLPGCSWADGIA 583
           +R +M +K + K+PGCSWAD + 
Sbjct: 662 VRKLMYDKKIPKVPGCSWADSLT 684


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/672 (56%), Positives = 466/672 (69%), Gaps = 100/672 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC +  +A
Sbjct: 2   VDLDLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--------------- 105
             LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FS               
Sbjct: 62  QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 121

Query: 106 ----------------WNMLISGFAK---------------------------------- 115
                           WN +I G+A                                   
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 181

Query: 116 --ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
              +L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F 
Sbjct: 182 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 241

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           LSALISGYA+CG+MNDARR+F   ++   V+WNSMISGY++NNE  EAL LF+ MRR GV
Sbjct: 242 LSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGV 301

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
            ED ST ASVLSACS+LG ++ G QVH H  KVG  +D+I+ SAL+D YSK   P DACK
Sbjct: 302 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 361

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LFS+L+ YDTILLN+MITVYS+CGRI+DA+ IF TMP+KSLISWNSMIVG SQN  PIEA
Sbjct: 362 LFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEA 421

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 422 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 481

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           YCKCG                                  +AL +F++MR+ GV+PT ITF
Sbjct: 482 YCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITF 541

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSACDHCGLV+EG+KWF AMK  YHI+P IEHYSCMVDL+ARAG L +A+NLIEQMP
Sbjct: 542 VGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMP 601

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            +AD  MWSS+LRGCVAHG+  LG+KVA+R+I+LDPEN+ AY+QLS I+AT  +W +S+ 
Sbjct: 602 LKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQ 661

Query: 561 IRDIMREKHVGK 572
           +R +M +K + K
Sbjct: 662 VRKLMYDKKIPK 673



 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 290/616 (47%), Gaps = 126/616 (20%)

Query: 27   LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
            L    L K   N+   + NR L +Y + G   D+L +F+++  +N  SWN  ++ F++ G
Sbjct: 731  LEFDMLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFG 790

Query: 87   HKEKSLQLFNVMPQKNDFSWNMLISGFAKADL------------------AALEY----- 123
              E++  +F+ MP+++  SWN +ISG+    L                  +   Y     
Sbjct: 791  ELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLS 850

Query: 124  -------GKQIHSHILVNGLDFDSVL-GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
                   GKQIH+ ++ NG+D  +V+ G+SL+ +YGK G  + A  V   M+E D    +
Sbjct: 851  FVSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWN 910

Query: 176  ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
            +LI    +CGK                       SGY        AL  F  MR  G   
Sbjct: 911  SLI---WSCGK-----------------------SGY-----QNLALRQFVLMRSVGYSP 939

Query: 236  DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
            D  T+++V++ CS+L  LE G+Q+     +VG + + IV+SA +D +SK           
Sbjct: 940  DQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSK----------- 988

Query: 296  SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                                C R+ED+  +F  +     +  N+MI   + +G    AL 
Sbjct: 989  --------------------CNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQ 1028

Query: 356  LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
            LF    + +LR  +F+L+ V+SA + +  ++ G Q+ + V   GL+SD I+++SLV+ Y 
Sbjct: 1029 LFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYA 1088

Query: 416  KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
            K G                                   AL +F E+   G  P  IT   
Sbjct: 1089 KFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAG 1148

Query: 443  ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
            +L AC+  GLV EG   F +M+ +Y + P IEHY+C+VD+ +R G L EA++++E MP E
Sbjct: 1149 VLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHE 1208

Query: 503  ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
                +W S+L  C  +GD     +VAER++EL+P+++  Y+ L+  +   G WE    + 
Sbjct: 1209 PSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVX 1268

Query: 563  DIMREKHVGKLPGCSW 578
              M+EK V K+ GCSW
Sbjct: 1269 RAMKEKGVRKVIGCSW 1284


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/675 (52%), Positives = 446/675 (66%), Gaps = 105/675 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L R LQS +T   +  G+QLH+ FLK GILNS++ +ANRLLQ+Y RC N  DA  LFDEM
Sbjct: 6   LVRTLQSWST---LREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEM 62

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS---------------------- 105
           P+ N FSWN +++  +  GH   +L LFN MP K  FS                      
Sbjct: 63  PQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFN 122

Query: 106 ---------WNMLISGFAK------------------------------------ADLAA 120
                    WN +I  +++                                    AD  A
Sbjct: 123 AMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLA 182

Query: 121 LEYGKQIHSHILVNG--LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           L  GKQ+H+ + V+G  L+ D VL SSL+NLYGKCGD +SA ++++ +++ D+F LSALI
Sbjct: 183 LNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALI 242

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           SGYAN G+M +AR VFD   D  +V+WNS+ISGY+SN E+ EA+ LF  M RNGV  DAS
Sbjct: 243 SGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDAS 302

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
            +A++LSA S L  +E  KQ+H +ACK GV  D++VAS+LLD YSK   P +ACKLFSEL
Sbjct: 303 AVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSEL 362

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
           K YDTILLNTMITVYS+CGRIEDAK IF TMP+K+LISWNS++VGL+QN  P EAL++F 
Sbjct: 363 KEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFS 422

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            MNKLDL+MD+FS ASVISACA  SSLELGEQVF +   IGL+SDQIISTSLVDFYCKCG
Sbjct: 423 QMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCG 482

Query: 419 Y---------------------------------DALALFNEMRNTGVKPTIITFTAILS 445
           +                                 +AL LF EM   GV P+ ITFT +LS
Sbjct: 483 FVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLS 542

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           ACDH GLV+EG+  F  MK  Y+I+P IEH+SCMVDLFARAG   EA++LIE+MPF+AD 
Sbjct: 543 ACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADA 602

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            MW S+LRGC+AHG+K +G+  AE++I+L+PEN  AYIQLS+I A+SG+WE S+L+R++M
Sbjct: 603 NMWLSVLRGCIAHGNKTIGKMAAEQIIQLEPENTGAYIQLSNILASSGDWEGSALVRELM 662

Query: 566 REKHVGKLPGCSWAD 580
           R+KH  K+PGCSWAD
Sbjct: 663 RDKHFQKIPGCSWAD 677



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 14/180 (7%)

Query: 1   MDTRIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +D ++D    A ++ +C    S+ +G+Q+    +  G L S   I+  L+  Y +CG   
Sbjct: 427 LDLKMDRFSFASVISACACRSSLELGEQVFGKAITIG-LESDQIISTSLVDFYCKCGFVE 485

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-D 117
               +FD M + +  SWN M+ G+   G+  ++L LF  M     +   +  +G   A D
Sbjct: 486 IGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSACD 545

Query: 118 LAAL-EYGKQI-----HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
            + L E G+ +     HS+ +  G++  S     +V+L+ + G F  A  ++  M    D
Sbjct: 546 HSGLVEEGRNLFHTMKHSYNINPGIEHFSC----MVDLFARAGYFEEAMDLIEEMPFQAD 601


>gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 672

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/663 (52%), Positives = 435/663 (65%), Gaps = 102/663 (15%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           +I   +QLHL  LK G L+S++   NRLLQ+Y R G+  DA  LFDEMP+ N FSWN +I
Sbjct: 9   TIREARQLHLSLLKTGNLHSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLI 68

Query: 80  EGFMKLGHKEKSLQLF-------------------------------NVMPQKNDFSWNM 108
           E  + LGH+ KSL+LF                               N MP KN   WN 
Sbjct: 69  EAHINLGHRNKSLELFHAMPHKTHYSWNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWNS 128

Query: 109 LISGFAK------------------------------------ADLAALEYGKQIHSHIL 132
           +I G+++                                    ADL AL+ GKQ+H+ + 
Sbjct: 129 MIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARVF 188

Query: 133 VNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           ++G +F  D VL SS+VN YGKCGD +SA +V+  +KE DDF LSAL+SGYAN G+M+DA
Sbjct: 189 IDGFEFEQDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSDA 248

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           R+VFD   D  SV+WNS+ISGY+SN E+ EAL LF+KMRRNGV  D S +A++LS  SSL
Sbjct: 249 RKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDFSAVANILSISSSL 308

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             +E  KQ+H HA K+G   D++VAS LLD YSK   P D+CKLF ELKVYD ILLNTMI
Sbjct: 309 LNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYDAILLNTMI 368

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
           TVY +CGR+EDAK +F +MPNK+LISWNS++VGL+QN  P EALD F  MNKLD++MDKF
Sbjct: 369 TVYCNCGRVEDAKEVFNSMPNKTLISWNSILVGLTQNACPSEALDTFSMMNKLDVKMDKF 428

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------- 419
           S ASVISACA  SSLELGEQ+F +   +GL+SDQII TSLVDFYCKCG            
Sbjct: 429 SFASVISACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYCKCGLVEMGRKVFDGM 488

Query: 420 ----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                 +AL LFNEM  +GV+P+ ITFT ILSACDHCGLV+EG+
Sbjct: 489 IKTDEVSWNTMLMGYATNGYGIEALTLFNEMGYSGVRPSAITFTGILSACDHCGLVEEGR 548

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
             F  MK  Y I+P IEHYSCMVDLFAR GC  EA+ LIE+MPF+AD  MW S+LRGCV+
Sbjct: 549 DLFRTMKHDYDINPGIEHYSCMVDLFARVGCFGEAMYLIEEMPFQADANMWLSVLRGCVS 608

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           HG+K +G+  AE++I+LDP N+ AYIQLS+I ATS +WE S+ +R++MR K+V K+PGCS
Sbjct: 609 HGNKTIGKMAAEKIIQLDPGNSGAYIQLSNILATSEDWEGSAEVRELMRNKNVQKIPGCS 668

Query: 578 WAD 580
           W D
Sbjct: 669 WMD 671


>gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/668 (50%), Positives = 445/668 (66%), Gaps = 95/668 (14%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           Y  RLLQSC+  +   + +Q +  FLKKG ++S + +AN LLQ+Y R G    A  LFDE
Sbjct: 8   YYVRLLQSCSNRNRETLWRQTNGLFLKKGFISSIVIVANHLLQIYSRSGKMGIARNLFDE 67

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQ-------------------------------LF 95
           MP RN FSWN MIEG+M  G K  SL+                               LF
Sbjct: 68  MPERNYFSWNTMIEGYMNSGDKGTSLRFFDMMPERDGYSWNVVISGFAKAGELSVARRLF 127

Query: 96  NVMPQKNDFSWNMLISGF------------------------------AKADLAALEYGK 125
           + MP+K+  + N L+ G+                              A A+L AL+ GK
Sbjct: 128 DAMPEKDVVTLNSLLHGYILNGYSEEALRLFKELKFSADAITLTTVLKACAELEALKRGK 187

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+ IL+ G++ DS + SSLVN+Y KCGD   A+ +L  + EPDD  LS LISGYANCG
Sbjct: 188 QIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIGEPDDHSLSTLISGYANCG 247

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++N++RR+FDR ++   ++WNSMISGYI+NN   EAL+LF++MR N   ED+ TLA+V++
Sbjct: 248 RVNESRRLFDRKSNRCVILWNSMISGYIANNMKFEALVLFNEMR-NETWEDSRTLAAVIN 306

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC  LGFLE GKQ+H HACK G++DD++VAS LLD YSK G P +ACKLFSE++ YDTIL
Sbjct: 307 ACIGLGFLETGKQMHCHACKFGLVDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTIL 366

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
           LN+MI VY SCGRI+DAK +F  + NKSLISWNSM  G SQNG P+E L+ F  M+KLDL
Sbjct: 367 LNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCPVETLEYFSQMHKLDL 426

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             D+ SL+SVISACA+ISSL LGEQVFAR TI+GLDSDQI+S+SL+D YCKCG       
Sbjct: 427 PTDEVSLSSVISACASISSLGLGEQVFARATIVGLDSDQIVSSSLIDLYCKCGSVENGRR 486

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                     ++A+ LF +M   G++PT ITF  +L+AC++CGL
Sbjct: 487 VFDTMVKSDEVPWNSMISGYATNGHGFEAIDLFKKMSIAGIRPTQITFMVVLTACNYCGL 546

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+EG+  F+AMK  +   P+ EH+SCMVDL ARAG + EA++L+E+MPF+AD  MWSS+L
Sbjct: 547 VEEGRLLFEAMKLDHGFVPDKEHFSCMVDLLARAGYVEEAIDLVEEMPFDADASMWSSVL 606

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
           RGCVA+G K +G+KVAE++IEL+PEN+ AY+QLS+IFATSG+WE S+L+R +MRE +V K
Sbjct: 607 RGCVANGYKAMGKKVAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVSK 666

Query: 573 LPGCSWAD 580
            PG SWAD
Sbjct: 667 NPGSSWAD 674


>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial; Flags: Precursor
 gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 695

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/668 (51%), Positives = 444/668 (66%), Gaps = 95/668 (14%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           Y  RLLQSC++ +   + +Q +   LKKG L+S + +AN LLQMY R G    A  LFDE
Sbjct: 28  YYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDE 87

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQ-------------------------------LF 95
           MP RN FSWN MIEG+M  G K  SL+                               LF
Sbjct: 88  MPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLF 147

Query: 96  NVMPQKNDFSWNMLISGF------------------------------AKADLAALEYGK 125
           N MP+K+  + N L+ G+                              A A+L AL+ GK
Sbjct: 148 NAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGK 207

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+ IL+ G++ DS + SSLVN+Y KCGD   A+ +L  ++EPDD  LSALISGYANCG
Sbjct: 208 QIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCG 267

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++N++R +FDR ++   ++WNSMISGYI+NN   EAL+LF++MR N   ED+ TLA+V++
Sbjct: 268 RVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRTLAAVIN 326

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC  LGFLE GKQ+H HACK G+IDD++VAS LLD YSK G P +ACKLFSE++ YDTIL
Sbjct: 327 ACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTIL 386

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
           LN+MI VY SCGRI+DAK +F  + NKSLISWNSM  G SQNG  +E L+ F  M+KLDL
Sbjct: 387 LNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDL 446

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             D+ SL+SVISACA+ISSLELGEQVFAR TI+GLDSDQ++S+SL+D YCKCG+      
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +A+ LF +M   G++PT ITF  +L+AC++CGL
Sbjct: 507 VFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGL 566

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+EG+K F++MK  +   P+ EH+SCMVDL ARAG + EA+NL+E+MPF+ D  MWSSIL
Sbjct: 567 VEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
           RGCVA+G K +G+K AE++IEL+PEN+ AY+QLS+IFATSG+WE S+L+R +MRE +V K
Sbjct: 627 RGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTK 686

Query: 573 LPGCSWAD 580
            PG SW D
Sbjct: 687 NPGSSWTD 694


>gi|302142722|emb|CBI19925.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 295/560 (52%), Positives = 355/560 (63%), Gaps = 121/560 (21%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC +  +A
Sbjct: 38  VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 97

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--------------- 105
             LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FS               
Sbjct: 98  QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 157

Query: 106 ----------------WNMLISGFAK---------------------------------- 115
                           WN +I G+A                                   
Sbjct: 158 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 217

Query: 116 --ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
              +L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F 
Sbjct: 218 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 277

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           LSALISGYA+CG+MNDARR+F   ++   V+WNSMISGY++NNE  EAL LF+ MRR GV
Sbjct: 278 LSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGV 337

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
            ED ST ASVLSACS+LG ++ G QVH H  KVG  +D+I+ SAL+D YSK   P DACK
Sbjct: 338 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 397

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LFS+L+ YDTILLN+MITV                     LISWNSMIVG SQN  PIEA
Sbjct: 398 LFSDLQAYDTILLNSMITV---------------------LISWNSMIVGFSQNACPIEA 436

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 437 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 496

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           YCKCG                                  +AL +F++MR+ GV+PT ITF
Sbjct: 497 YCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITF 556

Query: 441 TAILSACDHCGLVKEGQKWF 460
             +LSACDHCGLV+EG+K +
Sbjct: 557 VGVLSACDHCGLVEEGRKCY 576


>gi|108712115|gb|ABF99910.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215767226|dbj|BAG99454.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 684

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 271/676 (40%), Positives = 390/676 (57%), Gaps = 109/676 (16%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFDEM 67
           +LL+SC    S   G+QLH   LK G + S+LP +N LL MY RC   +  DA  LFDEM
Sbjct: 12  QLLRSC----SAVAGQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEM 67

Query: 68  PRRNCFS-------------------------------WNAMIEGFMKLGHKEKSLQLFN 96
           P +NCFS                               WN +I G +  G+ + +  L  
Sbjct: 68  PVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLI 127

Query: 97  VMPQKNDFSWNMLISGFAK---------------------------------------AD 117
            MP K+  + N ++  + +                                       AD
Sbjct: 128 EMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVLATIVGACAD 187

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
               ++G+Q H+ ++V+ ++ D VL  +LVN+Y KCGD +SA  VLN + + D+F LSAL
Sbjct: 188 WMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVDEFSLSAL 247

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I GYA+CG +++A R+FDR  + S  MWNS+ISG        +A  LF +M R+ VL D+
Sbjct: 248 IYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMRSDVLPDS 307

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           ST AS+L+ C     +  G+Q+HG   K G ++D+IVASAL+D YSK G+  DAC+ F E
Sbjct: 308 STYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRE 367

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           L+ +DTI+LN+MITVYS+CG+IE+A+ IF  +  KS+ISWNSM+VGLSQNG   +AL LF
Sbjct: 368 LRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLF 427

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
           C M++L LR+DK ++AS +SA ++I S+  GEQ+F+  T++GL SD ++++SL+D YCKC
Sbjct: 428 CEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKC 487

Query: 418 ---------------------------------GYDALALFNEMRNTGVKPTIITFTAIL 444
                                            G++AL L   M+  G+KP+  TF A+L
Sbjct: 488 GSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFIAVL 547

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           SAC H GLVKEG  WF  M+  + + P  EHY+C+ DL  RAG L E+V  IE MPFEAD
Sbjct: 548 SACCHSGLVKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRAGRLEESVEFIENMPFEAD 607

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
              W++++ GC A G++ + RKVA++++E++  +   Y+QLSS  A+ G+W KS+ IR +
Sbjct: 608 AVSWTTVIGGCKAQGNEAMMRKVAKKLMEMESSHPSLYVQLSSGLASLGDWTKSAEIRSM 667

Query: 565 MREKHVGKLPGCSWAD 580
           M E+ + K PG SW D
Sbjct: 668 MYERRITKNPGYSWID 683



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 180/360 (50%), Gaps = 34/360 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C        G+Q H   +   I    L ++  L+ MY +CG+   A  + + +
Sbjct: 178 LATIVGACADWMKYDFGRQAHARMVVSKI-EQDLVLSCALVNMYCKCGDLDSARYVLNGL 236

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----DLAAL-- 121
            + + FS +A+I G+   GH  ++++LF+   + +   WN LISG A A    D  AL  
Sbjct: 237 TQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFA 296

Query: 122 ---------------------------EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                        G+QIH   L  G   D ++ S+L++ Y KCG
Sbjct: 297 RMMRSDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCG 356

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
            +  A +    ++  D   L+++I+ Y+NCG++ +ARR+FD  T  S + WNSM+ G   
Sbjct: 357 LWEDACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQ 416

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N    +AL LF +M R G+  D   +AS LSA SS+  +  G+Q+   A  +G+  D +V
Sbjct: 417 NGHARDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVV 476

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           AS+L+D Y K G  ++ C++F E+   D +L N+M+  ++S G   +A  +   M  K +
Sbjct: 477 ASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGI 536



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 139/326 (42%), Gaps = 54/326 (16%)

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP---S 289
           V+ D      +L +CS++     G+Q+H    K G +   +  S  L     R  P    
Sbjct: 3   VIIDVRNCIQLLRSCSAVA----GQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQH 58

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA +LF E+ V +    N++IT + +      A +IFR+MP ++  SWN++I G+   G+
Sbjct: 59  DARRLFDEMPVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGN 118

Query: 350 PIEALDLFCNMNKLD-----------------------LRM--------------DKFSL 372
              A  L   M   D                       LR               D F L
Sbjct: 119 LDMARSLLIEMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVL 178

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG 432
           A+++ ACA+    + G Q  AR+ +  ++ D ++S +LV+ YCKCG    A +  + N  
Sbjct: 179 ATIVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARY--VLNGL 236

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
            +    + +A++     CG + E  + FD  +     +P I  ++ ++   A A C N+A
Sbjct: 237 TQVDEFSLSALIYGYASCGHLHEAIRLFDRKE-----EPSIAMWNSLISGCAFACCGNDA 291

Query: 493 VNLIEQM---PFEADVGMWSSILRGC 515
             L  +M       D   ++SIL  C
Sbjct: 292 FALFARMMRSDVLPDSSTYASILNVC 317


>gi|357161281|ref|XP_003579039.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Brachypodium distachyon]
          Length = 698

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/689 (37%), Positives = 382/689 (55%), Gaps = 122/689 (17%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT------DALLL 63
           +LL+SC        G+QLH   LK G + S+L   N LL MY RC + +      DA  L
Sbjct: 13  QLLRSCGPA----AGRQLHSALLKSGHVPSSLAPTNALLLMYARCASSSSPLHRRDAPRL 68

Query: 64  FDEMPRRNCFS-------------------------------WNAMIEGFMKLGHKEKSL 92
           FDEMP RNCFS                               WN +I G    G  + + 
Sbjct: 69  FDEMPARNCFSYNSLLTACLNSRDHRAALALFRSMPERNAFTWNTVIAGMASAGDLDTAR 128

Query: 93  QLFNVMPQKNDFSWNMLISGFAK------------------------------------- 115
            L + MP K+  + N ++  + +                                     
Sbjct: 129 ALLHEMPVKDPVACNTVLHRYVRCGRVDEAFALVRAIGSGNGSVPAPSSSSPCNDPFVLA 188

Query: 116 ------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
                 AD    ++G Q H+ ++V   + DSVL  +LV++Y KCGD +SA +  + + + 
Sbjct: 189 TVVGACADRTRYDFGTQAHARMVVAKTELDSVLSCALVDMYCKCGDLDSARRAFDGLAQA 248

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKM 228
           D+F +SAL+ GYA+ G++++A R+  R     +++ WNS++SG        +A +LF +M
Sbjct: 249 DEFSVSALVYGYASRGQLDEALRLLGREEGNLNILLWNSIVSGCAFACLGDDAFVLFARM 308

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
            R+ VL D++T ASVL+ C   G L+ G+Q+HG   K G I D+I ASAL+D YSK  + 
Sbjct: 309 MRSDVLPDSATYASVLNVCGFSGMLKPGQQMHGCGLKSGAISDMIAASALIDFYSKCSLW 368

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
            DAC+ FSEL+ +DT++LN+MITVYS+CGRIE+AK +F  + +KS+ISWNSM+VGLSQNG
Sbjct: 369 EDACRAFSELRFHDTVVLNSMITVYSNCGRIEEAKRVFHRITSKSVISWNSMVVGLSQNG 428

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
             I+AL+LFC M+ L +R+DK +LAS +SA +NI S+  GEQ+F+  T++GL SD ++++
Sbjct: 429 HAIDALELFCEMHHLGVRLDKVALASALSASSNICSISFGEQIFSLATVLGLQSDHVVAS 488

Query: 409 SLVDFYCKC---------------------------------GYDALALFNEMRNTGVKP 435
           SL+D YCKC                                 G+ AL L   MR  G++P
Sbjct: 489 SLIDLYCKCGNLANGCKIFDGIDKSDEVLWNSMLIGYASNGHGHKALELLELMRARGIRP 548

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
           T  TF  +LSAC H GLV+EG  WF  M+  +++ P  EHY+C+ DL  RAG L+EA   
Sbjct: 549 TERTFVGVLSACCHSGLVEEGLTWFKQMQEDFYVKPSAEHYACVTDLLVRAGRLDEAFEF 608

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA----YIQLSSIFAT 551
           IE MPF AD   W++++ GC A G++ L +K+A+R+ E++   +      Y+QLSS+ A 
Sbjct: 609 IENMPFTADTVSWTTVVGGCKAQGNEALMQKMAKRLKEMEQSGSSPHSSLYVQLSSVLAA 668

Query: 552 SGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            G+W KS+ +R  MRE+ + K PG SW D
Sbjct: 669 QGDWAKSAEMRGTMRERKIAKNPGYSWID 697



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 158/373 (42%), Gaps = 57/373 (15%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C     +  G+Q+H   LK G + S +  A+ L+  Y +C    DA   F E+ 
Sbjct: 321 ASVLNVCGFSGMLKPGQQMHGCGLKSGAI-SDMIAASALIDFYSKCSLWEDACRAFSELR 379

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA--ALEYGKQ 126
             +    N+MI  +   G  E++ ++F+ +  K+  SWN ++ G ++   A  ALE   +
Sbjct: 380 FHDTVVLNSMITVYSNCGRIEEAKRVFHRITSKSVISWNSMVVGLSQNGHAIDALELFCE 439

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK----EPDDFCLSALISGYA 182
           +H H+   G+  D V  +S ++        +   Q+ ++      + D    S+LI  Y 
Sbjct: 440 MH-HL---GVRLDKVALASALSASSNICSISFGEQIFSLATVLGLQSDHVVASSLIDLYC 495

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            CG + +  ++FD    +  V+WNSM+ GY SN    +AL L   MR  G+     T   
Sbjct: 496 KCGNLANGCKIFDGIDKSDEVLWNSMLIGYASNGHGHKALELLELMRARGIRPTERTFVG 555

Query: 243 VLSACSSLGFLEHG----KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           VLSAC   G +E G    KQ+                    D Y K      AC      
Sbjct: 556 VLSACCHSGLVEEGLTWFKQMQE------------------DFYVKPSAEHYAC------ 591

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLF 357
            V D ++           GR+++A      MP     +SW +++ G    G+  EAL   
Sbjct: 592 -VTDLLV---------RAGRLDEAFEFIENMPFTADTVSWTTVVGGCKAQGN--EAL--- 636

Query: 358 CNMNKLDLRMDKF 370
             M K+  R+ + 
Sbjct: 637 --MQKMAKRLKEM 647


>gi|242091920|ref|XP_002436450.1| hypothetical protein SORBIDRAFT_10g002910 [Sorghum bicolor]
 gi|241914673|gb|EER87817.1| hypothetical protein SORBIDRAFT_10g002910 [Sorghum bicolor]
          Length = 686

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/679 (38%), Positives = 383/679 (56%), Gaps = 114/679 (16%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP---TDALLLFDE 66
           +LL+SC    S   G+QLH   LK G + S+LP  N +L MY+R G+P    DA  LFDE
Sbjct: 12  QLLRSC----SAAAGRQLHQLLLKSGHVPSSLPPTNSVLLMYVR-GSPLYSRDAHRLFDE 66

Query: 67  MPRRNCFS-------------------------------WNAMIEGFMKLGHKEKSLQLF 95
           MP +NCFS                               WNA+I G    G  + +  L 
Sbjct: 67  MPTKNCFSYNSLITALFKSGDHRAALRVFRSMPDRNTFSWNAVITGLAGAGDLDTARDLL 126

Query: 96  NVMPQKNDFSWNMLISGFAK---------------------------------------A 116
             MP K+  + + ++  F +                                       A
Sbjct: 127 EEMPVKDAVACHAVLHRFVRCGRVDEAFALLKRIGSHCNPDVIPPWSDPFVLTTVVGACA 186

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           D    E G+Q+H+ ++V   + DSVL  +L+++Y KC D +SA  VL+ +K  D+  LSA
Sbjct: 187 DRMKYEIGRQVHARLVVAKTEIDSVLACALIDMYCKCRDLDSARLVLDRLKHVDEISLSA 246

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+ GYA+ G+++ A  +FD+  + S  +WNS+ISG +       A +LF +M R+ +L +
Sbjct: 247 LVYGYASYGQLHKALCLFDKVENPSIALWNSLISGCVPAYHGDSAFVLFVRMLRSDMLPN 306

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           +S  A VL+ C  LG L+ G+Q H  A K G ++D+I ASAL+D YSK  + +DAC+ F 
Sbjct: 307 SSIYAIVLNMCGFLGMLKPGQQTHACALKSGAVNDLIAASALIDFYSKCSLWADACQAFG 366

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           EL+ +DTI+LN+MITVYS+CG+I++A+ +F  +P+KS+ISWNSMIVG SQNG  ++A++L
Sbjct: 367 ELRHHDTIVLNSMITVYSNCGQIDEARRVFDMIPSKSVISWNSMIVGFSQNGHALDAMEL 426

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           FC M+ L L++D  +++SV+SA  +I S+  GEQ+FA    +GL SD I+ +SL+D YCK
Sbjct: 427 FCEMHWLGLQIDNVAVSSVLSASGSICSISFGEQIFALAIALGLQSDHIVVSSLIDLYCK 486

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                  +AL   + MR+ G+KP+  TF  +
Sbjct: 487 CGNLANGCRIFDGIDNPDEVLWNSMLIGYASNGYGLEALKFLDLMRSRGLKPSERTFVGV 546

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC H GLV+EG +WF  MK  + + P  EHY+C+ DL  RAG L+EAV  IE MPF+A
Sbjct: 547 LSACCHSGLVEEGLRWFYRMKEDFGVSPSAEHYACVTDLLVRAGRLDEAVEFIENMPFKA 606

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLI 561
           D   W+SI+ GC A G++ L  KVA +++E  L P ++  Y+QLSS  A  G+W+KS+ I
Sbjct: 607 DAISWTSIIGGCKAQGNEALLHKVANKLMETGLSPHSS-LYVQLSSTLAAHGDWDKSAEI 665

Query: 562 RDIMREKHVGKLPGCSWAD 580
           R +M ++ + K  GCSW D
Sbjct: 666 RSMMHDRRISKNAGCSWID 684



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 122/254 (48%), Gaps = 11/254 (4%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C     +  G+Q H   LK G +N  L  A+ L+  Y +C    DA   F E+ 
Sbjct: 311 AIVLNMCGFLGMLKPGQQTHACALKSGAVND-LIAASALIDFYSKCSLWADACQAFGELR 369

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYGKQ 126
             +    N+MI  +   G  +++ ++F+++P K+  SWN +I GF++    L A+E   +
Sbjct: 370 HHDTIVLNSMITVYSNCGQIDEARRVFDMIPSKSVISWNSMIVGFSQNGHALDAMELFCE 429

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM----KEPDDFCLSALISGYA 182
           +H      GL  D+V  SS+++  G     +   Q+  +      + D   +S+LI  Y 
Sbjct: 430 MHWL----GLQIDNVAVSSVLSASGSICSISFGEQIFALAIALGLQSDHIVVSSLIDLYC 485

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            CG + +  R+FD   +   V+WNSM+ GY SN    EAL     MR  G+     T   
Sbjct: 486 KCGNLANGCRIFDGIDNPDEVLWNSMLIGYASNGYGLEALKFLDLMRSRGLKPSERTFVG 545

Query: 243 VLSACSSLGFLEHG 256
           VLSAC   G +E G
Sbjct: 546 VLSACCHSGLVEEG 559



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 137/334 (41%), Gaps = 85/334 (25%)

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP--- 288
            V  D  +   +L +CS+      G+Q+H    K G +   +  +  +     RG P   
Sbjct: 2   AVAVDVPSCIQLLRSCSAAA----GRQLHQLLLKSGHVPSSLPPTNSVLLMYVRGSPLYS 57

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
            DA +LF E+   +    N++IT     G    A  +FR+MP+++  SWN++I GL+  G
Sbjct: 58  RDAHRLFDEMPTKNCFSYNSLITALFKSGDHRAALRVFRSMPDRNTFSWNAVITGLAGAG 117

Query: 349 SPIEALDLF-------------------------------------CNMNKLDLRMDKFS 371
               A DL                                      CN + +    D F 
Sbjct: 118 DLDTARDLLEEMPVKDAVACHAVLHRFVRCGRVDEAFALLKRIGSHCNPDVIPPWSDPFV 177

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNT 431
           L +V+ ACA+    E+G QV AR+ +   + D +++ +L+D YCKC           R+ 
Sbjct: 178 LTTVVGACADRMKYEIGRQVHARLVVAKTEIDSVLACALIDMYCKC-----------RDL 226

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
                           D   LV       D +K   H+D EI   S +V  +A  G L++
Sbjct: 227 ----------------DSARLV------LDRLK---HVD-EIS-LSALVYGYASYGQLHK 259

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVA--HGDKGL 523
           A+ L +++     + +W+S++ GCV   HGD   
Sbjct: 260 ALCLFDKVE-NPSIALWNSLISGCVPAYHGDSAF 292


>gi|222626171|gb|EEE60303.1| hypothetical protein OsJ_13371 [Oryza sativa Japonica Group]
          Length = 797

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/631 (39%), Positives = 362/631 (57%), Gaps = 109/631 (17%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFDEM 67
           +LL+SC    S   G+QLH   LK G + S+LP +N LL MY RC   +  DA  LFDEM
Sbjct: 12  QLLRSC----SAVAGQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEM 67

Query: 68  PRRNCFS-------------------------------WNAMIEGFMKLGHKEKSLQLFN 96
           P +NCFS                               WN +I G +  G+ + +  L  
Sbjct: 68  PVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLI 127

Query: 97  VMPQKNDFSWNMLISGFAK---------------------------------------AD 117
            MP K+  + N ++  + +                                       AD
Sbjct: 128 EMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVLATIVGACAD 187

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
               ++G+Q H+ ++V+ ++ D VL  +LVN+Y KCGD +SA  VLN + + D+F LSAL
Sbjct: 188 WMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVDEFSLSAL 247

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I GYA+CG +++A R+FDR  + S  MWNS+ISG        +A  LF +M R+ VL D+
Sbjct: 248 IYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMRSDVLPDS 307

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           ST AS+L+ C     +  G+Q+HG   K G ++D+IVASAL+D YSK G+  DAC+ F E
Sbjct: 308 STYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRE 367

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           L+ +DTI+LN+MITVYS+CG+IE+A+ IF  +  KS+ISWNSM+VGLSQNG   +AL LF
Sbjct: 368 LRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLF 427

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
           C M++L LR+DK ++AS +SA ++I S+  GEQ+F+  T++GL SD ++++SL+D YCKC
Sbjct: 428 CEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKC 487

Query: 418 ---------------------------------GYDALALFNEMRNTGVKPTIITFTAIL 444
                                            G++AL L   M+  G+KP+  TF A+L
Sbjct: 488 GSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFIAVL 547

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           SAC H GLVKEG  WF  M+  + + P  EHY+C+ DL  RAG L E+V  IE MPFEAD
Sbjct: 548 SACCHSGLVKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRAGRLEESVEFIENMPFEAD 607

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
              W++++ GC A G++ + RKVA++++E++
Sbjct: 608 AVSWTTVIGGCKAQGNEAMMRKVAKKLMEME 638



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 180/360 (50%), Gaps = 34/360 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C        G+Q H   +   I    L ++  L+ MY +CG+   A  + + +
Sbjct: 178 LATIVGACADWMKYDFGRQAHARMVVSKI-EQDLVLSCALVNMYCKCGDLDSARYVLNGL 236

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----DLAAL-- 121
            + + FS +A+I G+   GH  ++++LF+   + +   WN LISG A A    D  AL  
Sbjct: 237 TQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFA 296

Query: 122 ---------------------------EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                        G+QIH   L  G   D ++ S+L++ Y KCG
Sbjct: 297 RMMRSDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCG 356

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
            +  A +    ++  D   L+++I+ Y+NCG++ +ARR+FD  T  S + WNSM+ G   
Sbjct: 357 LWEDACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQ 416

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N    +AL LF +M R G+  D   +AS LSA SS+  +  G+Q+   A  +G+  D +V
Sbjct: 417 NGHARDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVV 476

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           AS+L+D Y K G  ++ C++F E+   D +L N+M+  ++S G   +A  +   M  K +
Sbjct: 477 ASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGI 536



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 139/326 (42%), Gaps = 54/326 (16%)

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP---S 289
           V+ D      +L +CS++     G+Q+H    K G +   +  S  L     R  P    
Sbjct: 3   VIIDVRNCIQLLRSCSAVA----GQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQH 58

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA +LF E+ V +    N++IT + +      A +IFR+MP ++  SWN++I G+   G+
Sbjct: 59  DARRLFDEMPVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGN 118

Query: 350 PIEALDLFCNMNKLD-----------------------LRM--------------DKFSL 372
              A  L   M   D                       LR               D F L
Sbjct: 119 LDMARSLLIEMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVL 178

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG 432
           A+++ ACA+    + G Q  AR+ +  ++ D ++S +LV+ YCKCG    A +  + N  
Sbjct: 179 ATIVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARY--VLNGL 236

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
            +    + +A++     CG + E  + FD  +     +P I  ++ ++   A A C N+A
Sbjct: 237 TQVDEFSLSALIYGYASCGHLHEAIRLFDRKE-----EPSIAMWNSLISGCAFACCGNDA 291

Query: 493 VNLIEQM---PFEADVGMWSSILRGC 515
             L  +M       D   ++SIL  C
Sbjct: 292 FALFARMMRSDVLPDSSTYASILNVC 317


>gi|218194108|gb|EEC76535.1| hypothetical protein OsI_14327 [Oryza sativa Indica Group]
          Length = 797

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/631 (39%), Positives = 362/631 (57%), Gaps = 109/631 (17%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFDEM 67
           +LL+SC    S   G+QLH   LK G + S+LP +N LL MY RC   +  DA  LFDEM
Sbjct: 12  QLLRSC----SAVAGQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEM 67

Query: 68  PRRNCFS-------------------------------WNAMIEGFMKLGHKEKSLQLFN 96
           P +NCFS                               WN +I G +  G+ + +  L  
Sbjct: 68  PVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLI 127

Query: 97  VMPQKNDFSWNMLISGFAK---------------------------------------AD 117
            MP K+  + N ++  + +                                       AD
Sbjct: 128 EMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVLATIVGACAD 187

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
               ++G+Q H+ ++V+ ++ D VL  +LVN+Y KCGD +SA  VLN + + D+F LSAL
Sbjct: 188 WMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVDEFSLSAL 247

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I GYA+CG +++A R+FDR  + S  MWNS+ISG        +A  LF +M R+ VL D+
Sbjct: 248 IYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMRSDVLPDS 307

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           ST AS+L+ C     +  G+Q+HG   K G ++D+IVASAL+D YSK G+  DAC+ F E
Sbjct: 308 STYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRE 367

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           L+ +DTI+LN+MITVYS+CG+IE+A+ IF  +  KS+ISWNSM+VGLSQNG   +AL LF
Sbjct: 368 LRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLF 427

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
           C M++L LR+DK ++AS +SA ++I S+  GEQ+F+  T++GL SD ++++SL+D YCKC
Sbjct: 428 CEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKC 487

Query: 418 ---------------------------------GYDALALFNEMRNTGVKPTIITFTAIL 444
                                            G++AL L   M+  G+KP+  TF A+L
Sbjct: 488 GSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFIAVL 547

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           SAC H GLVKEG  WF  M+  + + P  EHY+C+ DL  RAG L E+V  IE MPFEAD
Sbjct: 548 SACCHSGLVKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRAGRLEESVEFIENMPFEAD 607

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
              W++++ GC A G++ + RKVA++++E++
Sbjct: 608 AVSWTTVIGGCKAQGNEAMMRKVAKKLMEME 638



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 180/360 (50%), Gaps = 34/360 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C        G+Q H   +   I    L ++  L+ MY +CG+   A  + + +
Sbjct: 178 LATIVGACADWMKYDFGRQAHARMVVSKI-EQDLVLSCALVNMYCKCGDLDSARYVLNGL 236

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----DLAAL-- 121
            + + FS +A+I G+   GH  ++++LF+   + +   WN LISG A A    D  AL  
Sbjct: 237 TQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFA 296

Query: 122 ---------------------------EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                        G+QIH   L  G   D ++ S+L++ Y KCG
Sbjct: 297 RMMRSDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCG 356

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
            +  A +    ++  D   L+++I+ Y+NCG++ +ARR+FD  T  S + WNSM+ G   
Sbjct: 357 LWEDACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQ 416

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N    +AL LF +M R G+  D   +AS LSA SS+  +  G+Q+   A  +G+  D +V
Sbjct: 417 NGHARDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVV 476

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           AS+L+D Y K G  ++ C++F E+   D +L N+M+  ++S G   +A  +   M  K +
Sbjct: 477 ASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGI 536



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 139/326 (42%), Gaps = 54/326 (16%)

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP---S 289
           V+ D      +L +CS++     G+Q+H    K G +   +  S  L     R  P    
Sbjct: 3   VIIDVGNCIQLLRSCSAVA----GQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQH 58

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA +LF E+ V +    N++IT + +      A +IFR+MP ++  SWN++I G+   G+
Sbjct: 59  DARRLFDEMPVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGN 118

Query: 350 PIEALDLFCNMNKLD-----------------------LRM--------------DKFSL 372
              A  L   M   D                       LR               D F L
Sbjct: 119 LDMARSLLIEMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVL 178

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG 432
           A+++ ACA+    + G Q  AR+ +  ++ D ++S +LV+ YCKCG    A +  + N  
Sbjct: 179 ATIVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARY--VLNGL 236

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
            +    + +A++     CG + E  + FD  +     +P I  ++ ++   A A C N+A
Sbjct: 237 TQVDEFSLSALIYGYASCGHLHEAIRLFDRKE-----EPSIAMWNSLISGCAFACCGNDA 291

Query: 493 VNLIEQM---PFEADVGMWSSILRGC 515
             L  +M       D   ++SIL  C
Sbjct: 292 FALFARMMRSDVLPDSSTYASILNVC 317


>gi|115456597|ref|NP_001051899.1| Os03g0849700 [Oryza sativa Japonica Group]
 gi|113550370|dbj|BAF13813.1| Os03g0849700 [Oryza sativa Japonica Group]
          Length = 724

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/631 (39%), Positives = 362/631 (57%), Gaps = 109/631 (17%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFDEM 67
           +LL+SC    S   G+QLH   LK G + S+LP +N LL MY RC   +  DA  LFDEM
Sbjct: 12  QLLRSC----SAVAGQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEM 67

Query: 68  PRRNCFS-------------------------------WNAMIEGFMKLGHKEKSLQLFN 96
           P +NCFS                               WN +I G +  G+ + +  L  
Sbjct: 68  PVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLI 127

Query: 97  VMPQKNDFSWNMLISGFAK---------------------------------------AD 117
            MP K+  + N ++  + +                                       AD
Sbjct: 128 EMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVLATIVGACAD 187

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
               ++G+Q H+ ++V+ ++ D VL  +LVN+Y KCGD +SA  VLN + + D+F LSAL
Sbjct: 188 WMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVDEFSLSAL 247

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I GYA+CG +++A R+FDR  + S  MWNS+ISG        +A  LF +M R+ VL D+
Sbjct: 248 IYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMRSDVLPDS 307

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           ST AS+L+ C     +  G+Q+HG   K G ++D+IVASAL+D YSK G+  DAC+ F E
Sbjct: 308 STYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRE 367

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           L+ +DTI+LN+MITVYS+CG+IE+A+ IF  +  KS+ISWNSM+VGLSQNG   +AL LF
Sbjct: 368 LRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLF 427

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
           C M++L LR+DK ++AS +SA ++I S+  GEQ+F+  T++GL SD ++++SL+D YCKC
Sbjct: 428 CEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKC 487

Query: 418 ---------------------------------GYDALALFNEMRNTGVKPTIITFTAIL 444
                                            G++AL L   M+  G+KP+  TF A+L
Sbjct: 488 GSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFIAVL 547

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           SAC H GLVKEG  WF  M+  + + P  EHY+C+ DL  RAG L E+V  IE MPFEAD
Sbjct: 548 SACCHSGLVKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRAGRLEESVEFIENMPFEAD 607

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
              W++++ GC A G++ + RKVA++++E++
Sbjct: 608 AVSWTTVIGGCKAQGNEAMMRKVAKKLMEME 638



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 180/360 (50%), Gaps = 34/360 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C        G+Q H   +   I    L ++  L+ MY +CG+   A  + + +
Sbjct: 178 LATIVGACADWMKYDFGRQAHARMVVSKI-EQDLVLSCALVNMYCKCGDLDSARYVLNGL 236

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----DLAAL-- 121
            + + FS +A+I G+   GH  ++++LF+   + +   WN LISG A A    D  AL  
Sbjct: 237 TQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFA 296

Query: 122 ---------------------------EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                        G+QIH   L  G   D ++ S+L++ Y KCG
Sbjct: 297 RMMRSDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCG 356

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
            +  A +    ++  D   L+++I+ Y+NCG++ +ARR+FD  T  S + WNSM+ G   
Sbjct: 357 LWEDACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQ 416

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N    +AL LF +M R G+  D   +AS LSA SS+  +  G+Q+   A  +G+  D +V
Sbjct: 417 NGHARDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVV 476

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           AS+L+D Y K G  ++ C++F E+   D +L N+M+  ++S G   +A  +   M  K +
Sbjct: 477 ASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGI 536



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 139/326 (42%), Gaps = 54/326 (16%)

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP---S 289
           V+ D      +L +CS++     G+Q+H    K G +   +  S  L     R  P    
Sbjct: 3   VIIDVRNCIQLLRSCSAVA----GQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQH 58

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA +LF E+ V +    N++IT + +      A +IFR+MP ++  SWN++I G+   G+
Sbjct: 59  DARRLFDEMPVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGN 118

Query: 350 PIEALDLFCNMNKLD-----------------------LRM--------------DKFSL 372
              A  L   M   D                       LR               D F L
Sbjct: 119 LDMARSLLIEMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVL 178

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG 432
           A+++ ACA+    + G Q  AR+ +  ++ D ++S +LV+ YCKCG    A +  + N  
Sbjct: 179 ATIVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARY--VLNGL 236

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
            +    + +A++     CG + E  + FD  +     +P I  ++ ++   A A C N+A
Sbjct: 237 TQVDEFSLSALIYGYASCGHLHEAIRLFDRKE-----EPSIAMWNSLISGCAFACCGNDA 291

Query: 493 VNLIEQM---PFEADVGMWSSILRGC 515
             L  +M       D   ++SIL  C
Sbjct: 292 FALFARMMRSDVLPDSSTYASILNVC 317


>gi|28269400|gb|AAO37943.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 731

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/563 (40%), Positives = 336/563 (59%), Gaps = 72/563 (12%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  ++   +   AL +F  MP RN FSWN +I G +  G+ + +  L   MP K+  
Sbjct: 10  NSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLIEMPVKDPV 69

Query: 105 SWNMLISGFAK---------------------------------------ADLAALEYGK 125
           + N ++  + +                                       AD    ++G+
Sbjct: 70  ACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVLATIVGACADWMKYDFGR 129

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q H+ ++V+ ++ D VL  +LVN+Y KCGD +SA  VLN + + D+F LSALI GYA+CG
Sbjct: 130 QAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVDEFSLSALIYGYASCG 189

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            +++A R+FDR  + S  MWNS+ISG        +A  LF +M R+ VL D+ST AS+L+
Sbjct: 190 HLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMRSDVLPDSSTYASILN 249

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            C     +  G+Q+HG   K G ++D+IVASAL+D YSK G+  DAC+ F EL+ +DTI+
Sbjct: 250 VCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRELRFHDTIV 309

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
           LN+MITVYS+CG+IE+A+ IF  +  KS+ISWNSM+VGLSQNG   +AL LFC M++L L
Sbjct: 310 LNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLFCEMHRLGL 369

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------- 417
           R+DK ++AS +SA ++I S+  GEQ+F+  T++GL SD ++++SL+D YCKC        
Sbjct: 370 RLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKCGSLANGCR 429

Query: 418 -------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                    G++AL L   M+  G+KP+  TF A+LSAC H GL
Sbjct: 430 IFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFIAVLSACCHSGL 489

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           VKEG  WF  M+  + + P  EHY+C+ DL  RAG L E+V  IE MPFEAD   W++++
Sbjct: 490 VKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRAGRLEESVEFIENMPFEADAVSWTTVI 549

Query: 513 RGCVAHGDKGLGRKVAERMIELD 535
            GC A G++ + RKVA++++E++
Sbjct: 550 GGCKAQGNEAMMRKVAKKLMEME 572



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 180/360 (50%), Gaps = 34/360 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C        G+Q H   +   I    L ++  L+ MY +CG+   A  + + +
Sbjct: 112 LATIVGACADWMKYDFGRQAHARMVVSKI-EQDLVLSCALVNMYCKCGDLDSARYVLNGL 170

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----DLAAL-- 121
            + + FS +A+I G+   GH  ++++LF+   + +   WN LISG A A    D  AL  
Sbjct: 171 TQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFA 230

Query: 122 ---------------------------EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                        G+QIH   L  G   D ++ S+L++ Y KCG
Sbjct: 231 RMMRSDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCG 290

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
            +  A +    ++  D   L+++I+ Y+NCG++ +ARR+FD  T  S + WNSM+ G   
Sbjct: 291 LWEDACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQ 350

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N    +AL LF +M R G+  D   +AS LSA SS+  +  G+Q+   A  +G+  D +V
Sbjct: 351 NGHARDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVV 410

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           AS+L+D Y K G  ++ C++F E+   D +L N+M+  ++S G   +A  +   M  K +
Sbjct: 411 ASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGI 470



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 167/367 (45%), Gaps = 48/367 (13%)

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN-NEDTEALLL------ 224
           F  +++I+ + N    + A  +F    + ++  WN++I+G +S  N D    LL      
Sbjct: 7   FSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLIEMPVK 66

Query: 225 --------FHKMRRNGVLE---------------DAST-------LASVLSACSSLGFLE 254
                    H+  R G  +               DAS+       LA+++ AC+     +
Sbjct: 67  DPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVLATIVGACADWMKYD 126

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G+Q H       +  D++++ AL++ Y K G    A  + + L   D   L+ +I  Y+
Sbjct: 127 FGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVDEFSLSALIYGYA 186

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
           SCG + +A  +F      S+  WNS+I G +      +A  LF  M + D+  D  + AS
Sbjct: 187 SCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMRSDVLPDSSTYAS 246

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTG 432
           +++ C     +  G+Q+       G  +D I++++L+DFY KCG   DA   F E+R   
Sbjct: 247 ILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRELR--- 303

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
              TI+   ++++   +CG ++E ++ FD +  +  I      ++ MV   ++ G   +A
Sbjct: 304 FHDTIV-LNSMITVYSNCGQIEEARRIFDMITGKSVIS-----WNSMVVGLSQNGHARDA 357

Query: 493 VNLIEQM 499
           + L  +M
Sbjct: 358 LGLFCEM 364


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/620 (35%), Positives = 343/620 (55%), Gaps = 56/620 (9%)

Query: 8   LARLLQSC--NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
            A+LL SC  +   +I+V + +H   +K G  N    I NRL+  Y +CG+  D   +FD
Sbjct: 22  FAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIF-IQNRLIDAYSKCGSLEDGRQVFD 79

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEY 123
           +MP+RN ++WN+++ G  KLG  +++  LF  MP+++  +WN ++SGFA+ D    AL Y
Sbjct: 80  KMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCY 139

Query: 124 GKQIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM-KEP---DDFCLSALI 178
              +H    ++N   F SVL +          D N   QV +++ K P   D +  SAL+
Sbjct: 140 FAMMHKEGFVLNEYSFASVLSAC-----SGLNDMNKGVQVHSLIAKSPFLSDVYIGSALV 194

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
             Y+ CG +NDA+RVFD   D + V WNS+I+ +  N    EAL +F  M  + V  D  
Sbjct: 195 DMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEV 254

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSE 297
           TLASV+SAC+SL  ++ G++VHG   K   + +D+I+++A +D Y+K     +A  +F  
Sbjct: 255 TLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDS 314

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           + + + I   +MI+ Y+     + A+ +F  M  ++++SWN++I G +QNG   EAL LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLV 411
           C + +  +    +S A+++ ACA+++ L LG Q    V   G       + D  +  SL+
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434

Query: 412 DFYCKC---------------------------------GYDALALFNEMRNTGVKPTII 438
           D Y KC                                 G +AL LF EM  +G KP  I
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHI 494

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           T   +LSAC H G V+EG+ +F +M   + + P  +HY+CMVDL  RAG L EA ++IE+
Sbjct: 495 TMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEE 554

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MP + D  +W S+L  C  H +  LG+ VAE+++E++P N+  Y+ LS+++A  G+WE  
Sbjct: 555 MPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDV 614

Query: 559 SLIRDIMREKHVGKLPGCSW 578
             +R  MR++ V K PGCSW
Sbjct: 615 MNVRKSMRKEGVTKQPGCSW 634



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 168/361 (46%), Gaps = 46/361 (12%)

Query: 236 DASTLASVLSAC--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           D+S  A +L +C  S L  + + + VH    K G  +++ + + L+D YSK G   D  +
Sbjct: 18  DSSPFAKLLDSCIKSKLSAI-YVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +F ++   +    N+++T  +  G +++A  +FR+MP +   +WNSM+ G +Q+    EA
Sbjct: 77  VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEA 136

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L  F  M+K    ++++S ASV+SAC+ ++ +  G QV + +      SD  I ++LVD 
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDM 196

Query: 414 YCKCG---------------------------------YDALALFNEMRNTGVKPTIITF 440
           Y KCG                                  +AL +F  M  + V+P  +T 
Sbjct: 197 YSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTL 256

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
            +++SAC     +K GQ+    +     +  +I   +  VD++A+   + EA  + + MP
Sbjct: 257 ASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316

Query: 501 FE---ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
                A+  M S           + +  K+AER       N  ++  L + +  +GE E+
Sbjct: 317 IRNVIAETSMISGYAMAASTKAARLMFTKMAER-------NVVSWNALIAGYTQNGENEE 369

Query: 558 S 558
           +
Sbjct: 370 A 370


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/620 (34%), Positives = 340/620 (54%), Gaps = 56/620 (9%)

Query: 8   LARLLQSCNTHH--SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
            A+LL SC      +I V + +H   +K G  N    I NRL+  Y +CG+  D   LFD
Sbjct: 22  FAKLLDSCIKLKLSAIDV-RCVHASVIKSGFSNEVF-IQNRLIDAYAKCGSLEDGRQLFD 79

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEY 123
           +MP+RN F+WN+++ G  KLG  +++  LF  MP+++  +WN ++SGFA+ D    AL Y
Sbjct: 80  KMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYY 139

Query: 124 GKQIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM-KEP---DDFCLSALI 178
              +H    ++N   F S L +          D N   Q+ +++ K P   D +  SAL+
Sbjct: 140 FAMMHKEGFVLNEYTFASGLSAC-----SGLNDMNRGVQIHSLIAKSPCLSDVYIGSALV 194

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
             Y+ CG +NDA++VFD   D + V WNS+I+ Y  N    EAL +F  M  + V  D  
Sbjct: 195 DMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEV 254

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSE 297
           TLASV+SAC+SL  ++ G++VH    K+  + +D+I+++A +D Y+K     +A  +F  
Sbjct: 255 TLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDS 314

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           + + + I   +M++ Y+     + A+ +F  M  ++++SWN++I G +QNG   EAL LF
Sbjct: 315 MPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLV 411
           C + +  +    ++ A+++ ACA+++ L LG Q    V   G       + D  +  SL+
Sbjct: 375 CLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434

Query: 412 DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
           D Y KCG                                  +AL LF EM ++G KP  I
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHI 494

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           T   +LSAC H G V+EG+ +F +M   + + P  +HY+CMVDL  RAG L EA ++IE+
Sbjct: 495 TMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEE 554

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MP + D  +W S+L  C  H +  LG+ VAE++ E++  N+  Y+ LS+++A  G+W  +
Sbjct: 555 MPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDA 614

Query: 559 SLIRDIMREKHVGKLPGCSW 578
             +R +MR++ V K PGCSW
Sbjct: 615 MNVRKLMRKEGVTKQPGCSW 634


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/641 (33%), Positives = 323/641 (50%), Gaps = 110/641 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-----IANRLLQMYMRCGNPTDALLLFD 65
           LL+ C   H+    K LH H +K      TLP     + N L+  Y + G+   A  +FD
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIK------TLPYPETFLLNNLISSYAKLGSIPYACKVFD 68

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL------- 118
           +MP  N +SWN ++  + KLG   +   LF+ MP+++  SWN LISG+A   L       
Sbjct: 69  QMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKA 128

Query: 119 ----------------------------AALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
                                         ++ G+QIH H++  G      +GS LV++Y
Sbjct: 129 YNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMY 188

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
            K G  + A +V + + E +    + LI G   CG++ D++R+F    +  S+ W SMI+
Sbjct: 189 SKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMIT 248

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
           G+  N  D +A+ +F +M+   +  D  T  SVL+AC  +  L+ GKQVH +  +    D
Sbjct: 249 GFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKD 308

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
           ++ VASAL+D Y K                               C  I+ A+ +F+ M 
Sbjct: 309 NIFVASALVDMYCK-------------------------------CKNIKSAEAVFKKMT 337

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
            K+++SW +M+VG  QNG   EA+  F +M K  +  D F+L SVIS+CAN++SLE G Q
Sbjct: 338 CKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQ 397

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------------- 419
             AR    GL S   +S +LV  Y KCG                                
Sbjct: 398 FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGK 457

Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
             + + LF  M   G+KP  +TF  +LSAC   GLV++G + F++M  ++ I P  +HY+
Sbjct: 458 ANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYT 517

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
           CM+DLF+RAG + EA N I +MPF  D   W+++L  C  +G+  +G+  AE ++ELDP 
Sbjct: 518 CMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPH 577

Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           N  +Y+ LSS++A  G+WE+ + +R  MR+K + K PGCSW
Sbjct: 578 NTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSW 618


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 211/631 (33%), Positives = 320/631 (50%), Gaps = 100/631 (15%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C T +     K+LH   + K + N    + N L+  Y + GN T A  +FD+MP+ N FS
Sbjct: 16  CETRNQTQ-AKKLHC-LIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFS 73

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-------------------- 114
           WN M+  + K G      ++F++MP ++  SWN LISG+                     
Sbjct: 74  WNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGV 133

Query: 115 --------------KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
                          +    ++ G+QIH  I+  G      +GSSLV++Y K G  + A+
Sbjct: 134 LNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVAS 193

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           QV + ++E +    + +I+G    G + D++R+F    +  S+ W +MI+G I N  + E
Sbjct: 194 QVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAE 253

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           A+ LF  MR+ G+  D  T  SVL+AC  L  L+ GK++H    + G   +V V SAL+D
Sbjct: 254 AMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVD 313

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y K                               C  +  A+ +F+ M NK+++SW +M
Sbjct: 314 MYCK-------------------------------CRSVRYAEAVFKRMANKNVVSWTAM 342

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           +VG  QNG   EA+ +FC+M +  +  D F+L SVIS+CAN++SLE G Q   +  + GL
Sbjct: 343 LVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGL 402

Query: 401 DSDQIISTSLVDFYCKCG--------YDALA-------------------------LFNE 427
            S   +S +L+  Y KCG        +D ++                         LF  
Sbjct: 403 ISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFER 462

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M   G+KP  +TF A+LSAC   GLV+ GQ++F++M   + I P  +HY+CM+DLF RAG
Sbjct: 463 MLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAG 522

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
            L EA N I +MPF  D   W+++L  C  +G++ +G+  AE ++ELDP+N   YI LSS
Sbjct: 523 RLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSS 582

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           I+A  G+W   + +R  MREK   K PG SW
Sbjct: 583 IYAAKGKWSNVAQLRRGMREKGARKEPGFSW 613


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 214/620 (34%), Positives = 335/620 (54%), Gaps = 54/620 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL SC    S    + +H   L     +  + I NRL+ +Y +C    DA  LFD M
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQ-FSMEIFIQNRLIDVYGKCDCLDDARKLFDRM 76

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
           P+RN F+WN++I    K G  +++ +LF  MP+ +  SWN ++SGFA+ D    +LEY  
Sbjct: 77  PQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFV 136

Query: 126 QIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP----DDFCLSALISG 180
           ++H    L+N   F S L S+   L     D N   QV  ++ +     D +  SALI  
Sbjct: 137 KMHREDFLLNEYSFGSAL-SACAGLM----DLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+ CG +  A  VF    + + V WNS+I+ Y  N   +EAL +F +M  +G+  D  TL
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTL 251

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 299
           ASV+SAC+SL  L+ G Q+H    K     DD+++ +AL+D Y+K    ++A ++F  + 
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + + +   +M++ Y+    ++ A+ +F  M  ++++SWN++I G +QNG   EAL LF  
Sbjct: 312 IRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRL 371

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDF 413
           + +  +    ++  +++SACAN++ L LG Q    V   G       +SD  +  SL+D 
Sbjct: 372 LKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDM 431

Query: 414 YCKC---------------------------------GYDALALFNEMRNTGVKPTIITF 440
           Y KC                                 G +AL +F +M   G KP  +T 
Sbjct: 432 YMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTM 491

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +L AC H GLV+EG+ +F +M+ ++ + P  +HY+CMVDL  RAGCLNEA NLIE MP
Sbjct: 492 IGVLCACSHAGLVEEGRHYFFSME-EHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMP 550

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
              D  +W S+L  C  HG+  +G+  AE+++E+DP N+  Y+ LS+++A  G W     
Sbjct: 551 VNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVR 610

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +MR++ V K PGCSW +
Sbjct: 611 VRKLMRQQGVTKQPGCSWIE 630



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 173/379 (45%), Gaps = 44/379 (11%)

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           H + R+  L ++S  A +L +C         + VH          ++ + + L+D Y K 
Sbjct: 4   HGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKC 63

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
               DA KLF  +   +T   N++I+V +  G +++A  +F +MP     SWNSM+ G +
Sbjct: 64  DCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFA 123

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           Q+    E+L+ F  M++ D  ++++S  S +SACA +  L +G QV A V+     +D  
Sbjct: 124 QHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVY 183

Query: 406 ISTSLVDFYCKCG---------------------------------YDALALFNEMRNTG 432
           + ++L+D Y KCG                                  +AL +F  M ++G
Sbjct: 184 MGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG 243

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           ++P  +T  +++SAC     +KEG +    +        ++   + +VD++A+   +NEA
Sbjct: 244 LEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEA 303

Query: 493 VNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549
             + ++M      ++  M S   R       + +  K+ +R       N  ++  L + +
Sbjct: 304 RRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQR-------NVVSWNALIAGY 356

Query: 550 ATSGEWEKS-SLIRDIMRE 567
             +GE E++  L R + RE
Sbjct: 357 TQNGENEEALRLFRLLKRE 375


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 335/618 (54%), Gaps = 53/618 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL +C    S+   + +H   +K    +S + I NRL+ +Y +CG   DA  +FD M
Sbjct: 22  FAKLLDTCVKSKSVFEARLVHARIIKTQ-FSSEIFIQNRLVDVYGKCGFLEDARKVFDHM 80

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
            +RN FSWNA++    K G  +++L LF  MP+++  SWN ++SGFA+ D    AL +  
Sbjct: 81  QQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVV 140

Query: 126 QIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP----DDFCLSALISG 180
            +HS   ++N   F S L S+   L     D +   Q+  ++ +     D +  SAL+  
Sbjct: 141 DMHSEDFVLNEYSFGSAL-SACAGLM----DLSIGVQIHGLIAKSRYSLDVYMGSALVDM 195

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+ C  +  A+R FD     + V WNS+I+ Y  N    +AL +F +M   G+  D  TL
Sbjct: 196 YSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITL 255

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 299
           ASV SAC+SL  +  G Q+H    K     +D+++ +AL+D Y+K    ++A  +F  + 
Sbjct: 256 ASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMP 315

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + D +   +M++ Y+    ++ A+ +F  M  ++++SWN++I G +QNG   EA+ LF  
Sbjct: 316 LRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLL 375

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDF 413
           + +  +    ++  ++++ACAN++ L+LG Q    +   G       DSD  +  SL+D 
Sbjct: 376 LKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDM 435

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           Y KCG                                  +AL +F EM  +G +P  +T 
Sbjct: 436 YMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTM 495

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H GLV+EG+ +F +M  ++ + P  +HY+CMVDL  RAGCL+EA NLI+ MP
Sbjct: 496 IGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMP 555

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E D  +W S+L  C  HG+  LG+ VAER++E+DP N+  Y+ LS+++A  G W+    
Sbjct: 556 MEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVR 615

Query: 561 IRDIMREKHVGKLPGCSW 578
           +R  MR+  V K PGCSW
Sbjct: 616 VRKQMRQMGVIKQPGCSW 633



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 159/356 (44%), Gaps = 37/356 (10%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D+S  A +L  C     +   + VH    K     ++ + + L+D Y K G   DA K+F
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
             ++  +T   N ++   +  G +++A ++F+ MP +   SWN+M+ G +Q     EAL 
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
              +M+  D  ++++S  S +SACA +  L +G Q+   +       D  + ++LVD Y 
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 416 KC--------GYD-------------------------ALALFNEMRNTGVKPTIITFTA 442
           KC         +D                         AL +F  M N G++P  IT  +
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLAS 257

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           + SAC     ++EG +    +        ++   + +VD++A+   +NEA  + ++MP  
Sbjct: 258 VASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
            DV   +S++ G          R +   M+E    N  ++  L + +  +GE E++
Sbjct: 318 -DVVSETSMVSGYAKASSVKAARLMFSNMME---RNVVSWNALIAGYTQNGENEEA 369



 Score = 45.8 bits (107), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 22/170 (12%)

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALAL 424
           +D    A ++  C    S+     V AR+      S+  I   LVD Y KCG+  DA  +
Sbjct: 17  LDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKV 76

Query: 425 FNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH--YSCMV 480
           F+ M  RNT       ++ A+L A    G + E    F  M       PE +   ++ MV
Sbjct: 77  FDHMQQRNT------FSWNAVLGALTKFGALDEALNLFKCM-------PERDQCSWNAMV 123

Query: 481 DLFARAGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKV 527
             FA+     EA+  +  M    F  +   + S L  C    D  +G ++
Sbjct: 124 SGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQI 173


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 204/603 (33%), Positives = 318/603 (52%), Gaps = 100/603 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C +   +  G+++H   + +G   S + +   L  MY +CG+  +A  +FD MP+R
Sbjct: 126 VIKACGSQSDLQAGRKVHEDIIARG-FESDVIVGTALASMYTKCGSLENARQVFDRMPKR 184

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISGFAK-ADLAALEYGKQI 127
           +  SWNA+I G+ + G   ++L LF+ M Q N    N   L+S     A L ALE GKQI
Sbjct: 185 DVVSWNAIIAGYSQNGQPYEALALFSEM-QVNGIKPNSSTLVSVMPVCAHLLALEQGKQI 243

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H + + +G++ D ++ + LVN+Y                               A CG +
Sbjct: 244 HCYAIRSGIESDVLVVNGLVNMY-------------------------------AKCGNV 272

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           N A ++F+R        WN++I GY  N++  EAL  F++M+  G+  ++ T+ SVL AC
Sbjct: 273 NTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPAC 332

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + L  LE G+Q+HG+A + G   + +V +AL++ Y+K                       
Sbjct: 333 AHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAK----------------------- 369

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                   CG +  A  +F  MP K++++WN++I G SQ+G P EAL LF  M    ++ 
Sbjct: 370 --------CGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKP 421

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
           D F++ SV+ ACA+  +LE G+Q+       G +S+ ++ T LVD Y KCG         
Sbjct: 422 DSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLF 481

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                    DALALF++M+ TG K   I FTAIL+AC H GLV 
Sbjct: 482 ERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVD 541

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           +G ++F  MK  Y + P++EHY+C+VDL  RAG L+EA  +I+ M  E D  +W ++L  
Sbjct: 542 QGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGA 601

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H +  LG + A+ + ELDP+NA  Y+ LS+I+A +  WE  + +R +M+EK V K P
Sbjct: 602 CRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQP 661

Query: 575 GCS 577
           GCS
Sbjct: 662 GCS 664



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 233/506 (46%), Gaps = 103/506 (20%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQ 126
           R N   W   I G++K G   K+L+L+  M +       ++     KA    + L+ G++
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  I+  G + D ++G++L ++Y K                               CG 
Sbjct: 142 VHEDIIARGFESDVIVGTALASMYTK-------------------------------CGS 170

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +AR+VFDR      V WN++I+GY  N +  EAL LF +M+ NG+  ++STL SV+  
Sbjct: 171 LENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPV 230

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ L  LE GKQ+H +A + G+  DV+V + L++ Y+K G  + A KLF           
Sbjct: 231 CAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFER--------- 281

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                                 MP + + SWN++I G S N    EAL  F  M    ++
Sbjct: 282 ----------------------MPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIK 319

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            +  ++ SV+ ACA++ +LE G+Q+       G +S+ ++  +LV+ Y KCG        
Sbjct: 320 PNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKL 379

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                    ++ALALF EM+  G+KP      ++L AC H   +
Sbjct: 380 FERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLAL 439

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL- 512
           ++G K       +   +  +   + +VD++A+ G +N A  L E+MP E DV  W++++ 
Sbjct: 440 EQG-KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMIL 497

Query: 513 -RGCVAHGDKGLG--RKVAERMIELD 535
             G   HG+  L    K+ E   +LD
Sbjct: 498 AYGIHGHGEDALALFSKMQETGTKLD 523



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 234/499 (46%), Gaps = 77/499 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++  C    ++  GKQ+H + ++ GI +  L + N L+ MY +CGN   A  LF+ M
Sbjct: 224 LVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVL-VVNGLVNMYAKCGNVNTAHKLFERM 282

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADLAALEYGK 125
           P R+  SWNA+I G+       ++L  FN M  +     S  M+    A A L ALE G+
Sbjct: 283 PIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQ 342

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH + + +G + + V+G++LVN+Y KCG+ NSA ++   M + +    +A+ISGY+  G
Sbjct: 343 QIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHG 402

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
             +                               EAL LF +M+  G+  D+  + SVL 
Sbjct: 403 HPH-------------------------------EALALFIEMQAQGIKPDSFAIVSVLP 431

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+    LE GKQ+HG+  + G   +V+V + L+D Y+K G  + A KLF  +   D + 
Sbjct: 432 ACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVS 491

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
             TMI  Y   G  ED                               AL LF  M +   
Sbjct: 492 WTTMILAYGIHGHGED-------------------------------ALALFSKMQETGT 520

Query: 366 RMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGY--DAL 422
           ++D  +  ++++AC++   ++ G Q F  + +  GL         LVD   + G+  +A 
Sbjct: 521 KLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEAN 580

Query: 423 ALFNEMRNTGVKPTIITFTAILSACD-HCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMV 480
            +   ++N  ++P    + A+L AC  HC  ++ G++   A K  + +DP+   +Y  + 
Sbjct: 581 GI---IKNMSLEPDANVWGALLGACRIHCN-IELGEQ---AAKHLFELDPDNAGYYVLLS 633

Query: 481 DLFARAGCLNEAVNLIEQM 499
           +++A A    +   L + M
Sbjct: 634 NIYAEAQRWEDVAKLRKMM 652


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  361 bits (926), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 212/645 (32%), Positives = 323/645 (50%), Gaps = 99/645 (15%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M +  +Y A LL+ C    +    K+LH   LK  I      ++N L+  Y + GN   A
Sbjct: 1   MSSSSNYYASLLKLCCESQNQTQAKKLHCLILKT-IKQPETFLSNNLITAYYKLGNLAYA 59

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK----- 115
             +FD +P+ N FSWN ++  + KLG   +  Q+FN+MP ++  SWN+ ISG+A      
Sbjct: 60  HHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCS 119

Query: 116 -----------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSL 146
                                        +    ++ G+QI+  IL  G   D  +GS L
Sbjct: 120 DAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPL 179

Query: 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
           V++Y K G    A +  + M E +    + +I+G   CG + +++R+F    +  S+ W 
Sbjct: 180 VDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWT 239

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
            MI+G + N  + EAL +F +MR  G   D  T  SVL+AC SL  L  GKQ+H +  + 
Sbjct: 240 IMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT 299

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
              D+V V SAL+D YSK                               C  I+ A+ +F
Sbjct: 300 DHKDNVFVGSALVDMYSK-------------------------------CRSIKSAETVF 328

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
           + MP K++ISW +M+VG  QNG   EA+ +F  M +  +  D F+L SVIS+CAN++SLE
Sbjct: 329 KRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLE 388

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------- 419
            G Q   R  + GL S   +S +L+  Y KCG                            
Sbjct: 389 EGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYA 448

Query: 420 ------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
                 + + LF  M   G+KP  +TF  +LSAC   GLV++G ++F++M  ++ I P +
Sbjct: 449 QFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIV 508

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           +H +C++DL  RAG L EA N I  MP   DV  W+++L  C  HGD  +G+  A+ +I 
Sbjct: 509 DHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIA 568

Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           L+P+N  +Y+ LSS++A+ G+W+K + +R  MR+K V K PG SW
Sbjct: 569 LEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSW 613


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 204/621 (32%), Positives = 309/621 (49%), Gaps = 99/621 (15%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H H +K    N  + + N L+  Y +    T A  +FD+MP+RN +SWN ++  + K
Sbjct: 29  KKIHCHIIK-AFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSK 87

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFA------------------------------ 114
           L    +  ++F+ MP ++  SWN LIS +A                              
Sbjct: 88  LACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALST 147

Query: 115 ----KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 170
                +    +  G Q+H H++  G      +GS LV++Y K G    A Q  + M E +
Sbjct: 148 MLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKN 207

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
               + LI+G   C ++ D+R++F    +  S+ W +MI+G+  N  D EA+ LF +MR 
Sbjct: 208 VVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRL 267

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
             +  D  T  SVL+AC  +  L+ GKQVH +  +    D++ V SAL+D Y K      
Sbjct: 268 ENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCK------ 321

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
                                    C  I+ A+ +FR M  K+++SW +M+VG  QNG  
Sbjct: 322 -------------------------CKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYS 356

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
            EA+ +FC+M    +  D F+L SVIS+CAN++SLE G Q   R  + GL S   +S +L
Sbjct: 357 EEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNAL 416

Query: 411 VDFYCKCGY---------------------------------DALALFNEMRNTGVKPTI 437
           V  Y KCG                                  + L LF  M   G KP  
Sbjct: 417 VTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDK 476

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           +TF  +LSAC   GLV++G + F++M  ++ I P  +HY+CM+DLF+RAG L EA   I 
Sbjct: 477 VTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFIN 536

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
           +MPF  D   W+S+L  C  H +  +G+  AE +++L+P N  +YI LSSI+A  G+WE+
Sbjct: 537 KMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEE 596

Query: 558 SSLIRDIMREKHVGKLPGCSW 578
            + +R  MR+K + K PGCSW
Sbjct: 597 VANLRKGMRDKGLRKEPGCSW 617



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 138/520 (26%), Positives = 220/520 (42%), Gaps = 114/520 (21%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H+G Q+H H +K G   S + + + L+ MY + G    A   FDEMP +N   +N +I 
Sbjct: 158 VHLGLQVHGHVVKFG-FQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIA 216

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL---------------------- 118
           G M+    E S QLF  M +K+  SW  +I+GF +  L                      
Sbjct: 217 GLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYT 276

Query: 119 -----------AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
                       AL+ GKQ+H++I+      +  +GS+LV++Y KC    SA  V   M 
Sbjct: 277 FGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKM- 335

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
                          NC  +               V W +M+ GY  N    EA+ +F  
Sbjct: 336 ---------------NCKNV---------------VSWTAMLVGYGQNGYSEEAVKIFCD 365

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M+ NG+  D  TL SV+S+C++L  LE G Q H  A   G+I  + V++AL+  Y K G 
Sbjct: 366 MQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGS 425

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             D+ +LFSE+   D +    +++                               G +Q 
Sbjct: 426 IEDSHRLFSEMSYVDEVSWTALVS-------------------------------GYAQF 454

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
           G   E L LF +M     + DK +   V+SAC+    ++ G Q+F  +    +   +II 
Sbjct: 455 GKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESM----IKEHRIIP 510

Query: 408 -----TSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                T ++D + + G   +A    N+M      P  I + ++LS+C     ++ G KW 
Sbjct: 511 IEDHYTCMIDLFSRAGRLEEARKFINKM---PFSPDAIGWASLLSSCRFHRNMEIG-KW- 565

Query: 461 DAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM 499
            A +    ++P     Y  +  ++A  G   E  NL + M
Sbjct: 566 -AAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGM 604



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 135/300 (45%), Gaps = 19/300 (6%)

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C  L      K++H H  K     ++ + + L+  Y+K    + A ++F ++   +    
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG---SPIEALDLFCNMNKL 363
           NT+++ YS    + + + +F  MP + ++SWNS+I   +  G     ++A +L       
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDA 421
           +L  ++ +L++++   +    + LG QV   V   G  S   + + LVD Y K G  + A
Sbjct: 139 NL--NRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCA 196

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
              F+EM    V    + +  +++    C  +++ ++ F  M+ +  I      ++ M+ 
Sbjct: 197 RQAFDEMPEKNV----VMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSIS-----WTAMIA 247

Query: 482 LFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
            F + G   EA++L  +M     E D   + S+L  C        G++V   +I  D ++
Sbjct: 248 GFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQD 307


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 205/620 (33%), Positives = 335/620 (54%), Gaps = 53/620 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL SC    S    +++H   +K    +S + I NRL+  Y +CG   DA  +FD M
Sbjct: 22  FAKLLDSCVRSKSGIDARRIHARIIKTQ-FSSEIFIQNRLVDAYGKCGYFEDARKVFDRM 80

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
           P+RN FS+NA++    K G  +++  +F  MP+ +  SWN ++SGFA+ D    AL +  
Sbjct: 81  PQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFV 140

Query: 126 QIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP----DDFCLSALISG 180
            +HS   ++N   F S L +          D N   Q+  ++ +     D +  SAL+  
Sbjct: 141 DMHSEDFVLNEYSFGSALSAC-----AGLTDLNMGIQIHALISKSRYLLDVYMGSALVDM 195

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+ CG +  A+R FD     + V WNS+I+ Y  N    +AL +F  M  NGV  D  TL
Sbjct: 196 YSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITL 255

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 299
           ASV+SAC+S   +  G Q+H    K     +D+++ +AL+D Y+K    ++A  +F  + 
Sbjct: 256 ASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMP 315

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + + +   +M+  Y+    ++ A+ +F  M  K+++SWN++I G +QNG   EA+ LF  
Sbjct: 316 LRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLL 375

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDF 413
           + +  +    ++  ++++ACAN++ L+LG Q   ++   G       +SD  +  SL+D 
Sbjct: 376 LKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDM 435

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           Y KCG                                  +AL +F +M  +G KP  +T 
Sbjct: 436 YMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTM 495

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H GLV+EG+++F +M+ +  + P  +H++CMVDL  RAGCL+EA +LI+ MP
Sbjct: 496 IGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMP 555

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            + D  +W S+L  C  HG+  LG+ VAE+++E+DP N+  Y+ LS+++A  G W+    
Sbjct: 556 MQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVR 615

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R  MR++ V K PGCSW +
Sbjct: 616 VRKQMRQRGVIKQPGCSWIE 635



 Score = 47.0 bits (110), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 18/168 (10%)

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALAL 424
           +D    A ++ +C    S     ++ AR+      S+  I   LVD Y KCGY  DA  +
Sbjct: 17  LDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKV 76

Query: 425 FNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
           F+ M  RNT       ++ A+LS     G + E    F +M      +P+   ++ MV  
Sbjct: 77  FDRMPQRNT------FSYNAVLSVLTKFGKLDEAFNVFKSMP-----EPDQCSWNAMVSG 125

Query: 483 FARAGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKV 527
           FA+     EA+     M    F  +   + S L  C    D  +G ++
Sbjct: 126 FAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQI 173


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 209/620 (33%), Positives = 330/620 (53%), Gaps = 53/620 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            ++LL  C    S     ++H   +K    + T  I NRL+ +Y +CG    A  LFD M
Sbjct: 22  FSKLLNQCARSRSARDTSRVHACIIKSPFASETF-IQNRLIDVYGKCGCVDVARKLFDRM 80

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
             RN FSWN++I  F K G  + ++ +F  MPQ +  SWN +ISGF +      AL Y  
Sbjct: 81  LERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFA 140

Query: 126 QIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISG 180
           Q+H H  LVN   F S L +          D    +Q+ +++       D +  SAL+  
Sbjct: 141 QMHGHGFLVNEYSFGSALSAC-----AGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDM 195

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+ CG++  A+ VFD  T  S V WNS+I+ Y  N    EAL +F +M + GV  D  TL
Sbjct: 196 YSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTL 255

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 299
           ASV+SAC+++  ++ G+Q+H    K     +D+I+ +ALLD Y+K    ++A  +F  + 
Sbjct: 256 ASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMP 315

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           +   +   +M++ Y+   +++ A+++F  M  K +I+WN++I G +QNG   EAL LF  
Sbjct: 316 IRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRL 375

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDF 413
           + +  +    ++  ++++ACAN++ L+LG Q  + V   G       DSD  +  SL+D 
Sbjct: 376 LKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDM 435

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           Y KCG                                   AL +F +M  +G  P  +T 
Sbjct: 436 YMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTM 495

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +L AC H GL+ EG+ +F +M  Q+ + P  +HY+CMVDL  RAG L EA NLIE+M 
Sbjct: 496 IGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMS 555

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            + D  +W S+L  C  H +  LG  V ++++E+DPEN+  Y+ LS+++A + +W+    
Sbjct: 556 MQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVR 615

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +MR++ V K PGCSW +
Sbjct: 616 VRKLMRQRGVVKQPGCSWIE 635



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 149/348 (42%), Gaps = 63/348 (18%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D+S  + +L+ C+         +VH    K     +  + + L+D Y K G    A KLF
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
             +   +    N++I  ++  G ++DA HIF  MP     SWNSMI G  Q+G   EAL 
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
            F  M+     ++++S  S +SACA +  L+LG Q+ + V      SD  + ++LVD Y 
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYS 197

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +AL +F EM   GV+P  +T  +
Sbjct: 198 KCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLAS 257

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           ++SAC     +KEGQ+    +        ++   + ++D++A+   +NEA  + + MP  
Sbjct: 258 VVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIR 317

Query: 503 A------------------------------DVGMWSSILRGCVAHGD 520
           +                              DV  W++++ GC  +G+
Sbjct: 318 SVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGE 365



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 18/170 (10%)

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA- 423
           L +D    + +++ CA   S     +V A +      S+  I   L+D Y KCG   +A 
Sbjct: 15  LFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVAR 74

Query: 424 -LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH--YSCMV 480
            LF+ M    ++  I ++ +I+ A    G + +    F+ M       P+++   ++ M+
Sbjct: 75  KLFDRM----LERNIFSWNSIICAFTKSGFLDDAVHIFEKM-------PQVDQCSWNSMI 123

Query: 481 DLFARAGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKV 527
             F + G  +EA+    QM    F  +   + S L  C    D  LG ++
Sbjct: 124 SGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQI 173


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 328/620 (52%), Gaps = 53/620 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL  C    S    + +H   ++         I NRL+ +Y +CG    A  +FD M
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVF-IQNRLIDVYGKCGYLDYARKVFDRM 85

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
             RN FS+N++I   M+ G  ++S  LF++MP+K+  SWN +I+GFA+ D    AL++  
Sbjct: 86  SERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFV 145

Query: 126 QIH-SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP----DDFCLSALISG 180
           ++H    ++N   F S L +       +  D     Q+  ++ +     D F  S LI  
Sbjct: 146 RMHRDDFVLNDYSFGSGLSAC-----SRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDF 200

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+ CG +  ARRVFD   + + V WN +I+ Y  N    EAL  F +M   G   D  TL
Sbjct: 201 YSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTL 260

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 299
           ASV+SAC++L   + G Q+H    K     +D+I+ +AL+D Y+K G  ++A  +F  + 
Sbjct: 261 ASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMP 320

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           V + +   TM++ Y+    ++ A+ +F T+  K ++SWN++I G +QNG   EAL LF  
Sbjct: 321 VRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRM 380

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDF 413
           + +  +    ++  ++++A AN++ LELG Q  + V   G       + D  +  SL+D 
Sbjct: 381 LKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDM 440

Query: 414 YCKCG---------------------------------YDALALFNEMRNTGVKPTIITF 440
           Y KCG                                  +AL LF +M  +G KP  +T 
Sbjct: 441 YMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTM 500

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
              L AC H GLV+EG+++F +M  ++ + P  +HY+CMVDL  RAGCL EA +LIE MP
Sbjct: 501 IGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMP 560

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            + D  +WSS+L  C  H +  LG+ VAE++ E+DP ++  Y+ L+++++  G W  +  
Sbjct: 561 KQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVS 620

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +MR + V K PGCSW D
Sbjct: 621 VRKLMRRRGVVKQPGCSWID 640



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 33/298 (11%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D+S  A +L  C  L      + VHG   +    ++V + + L+D Y K G    A K+F
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
             +   +    N++I+     G ++++  +F  MP K   SWNSMI G +Q+    EALD
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
            F  M++ D  ++ +S  S +SAC+ +  L+LG Q+   ++      D  + + L+DFY 
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +AL  F  M   G KP  +T  +
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           ++SAC      KEG +    +        ++   + +VD++A+ G +NEA  + ++MP
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMP 320


>gi|413953269|gb|AFW85918.1| hypothetical protein ZEAMMB73_461812, partial [Zea mays]
          Length = 398

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 177/397 (44%), Positives = 259/397 (65%), Gaps = 33/397 (8%)

Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
           +Y KCGD +SA+QVL+ ++  D+  LSAL+ GYA+CG+++ A  +FD+    S  +W S+
Sbjct: 1   MYCKCGDLDSAHQVLDRLEHVDEISLSALVYGYASCGQLHKALCLFDKMESPSIALWTSL 60

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           ISG         A +LF +M R+ +L +++  A VL+ C  LG L+ G+Q    A K G 
Sbjct: 61  ISGCNPAYHGDGAFVLFVRMLRSEMLPNSTIYAIVLNMCGFLGMLKPGQQTQACALKSGA 120

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
           ++D+I ASAL+D YSK G+ +DAC+ FSEL+ +DTI+LN+MITVYS+CG+I++A+ +FR 
Sbjct: 121 VNDLIAASALIDFYSKCGLWADACQAFSELRHHDTIVLNSMITVYSNCGQIDEARRVFRL 180

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           +P+KS+ISWNSMIVG SQNG  ++AL+LFC M++L L++D  +++SV+SA  +I S+  G
Sbjct: 181 IPSKSVISWNSMIVGFSQNGHALDALELFCEMHRLGLQLDNVAISSVLSASGSICSVSSG 240

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKC------------------------------- 417
           EQ+F     +GL SD I+++SL+D YCKC                               
Sbjct: 241 EQIFGLAIALGLQSDHIVASSLIDLYCKCGNLANGRRIFSGIANPDEVLWNSMLIGYASN 300

Query: 418 --GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
             G +AL L + M++ G+KP+  TF  +LSAC H GLV+EG +WF  MK  + + P  EH
Sbjct: 301 GYGLEALKLLDLMQSRGLKPSERTFVGVLSACCHSGLVEEGLRWFYRMKEDFGVSPSAEH 360

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           Y+C+ DL  RAG L+EAV  IE MPF+AD   W+SI+
Sbjct: 361 YACVTDLLVRAGRLDEAVEFIENMPFKADAISWTSII 397



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 174/355 (49%), Gaps = 41/355 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ 100
           L+  Y  CG    AL LFD+M   +   W ++I G     H + +  LF       ++P 
Sbjct: 29  LVYGYASCGQLHKALCLFDKMESPSIALWTSLISGCNPAYHGDGAFVLFVRMLRSEMLPN 88

Query: 101 KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
              ++  + + GF    L  L+ G+Q  +  L +G   D +  S+L++ Y KCG +  A 
Sbjct: 89  STIYAIVLNMCGF----LGMLKPGQQTQACALKSGAVNDLIAASALIDFYSKCGLWADAC 144

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           Q  + ++  D   L+++I+ Y+NCG++++ARRVF      S + WNSMI G+  N    +
Sbjct: 145 QAFSELRHHDTIVLNSMITVYSNCGQIDEARRVFRLIPSKSVISWNSMIVGFSQNGHALD 204

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL LF +M R G+  D   ++SVLSA  S+  +  G+Q+ G A  +G+  D IVAS+L+D
Sbjct: 205 ALELFCEMHRLGLQLDNVAISSVLSASGSICSVSSGEQIFGLAIALGLQSDHIVASSLID 264

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y K G  ++  ++FS +   D +L N+M                               
Sbjct: 265 LYCKCGNLANGRRIFSGIANPDEVLWNSM------------------------------- 293

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           ++G + NG  +EAL L   M    L+  + +   V+SAC +   +E G + F R+
Sbjct: 294 LIGYASNGYGLEALKLLDLMQSRGLKPSERTFVGVLSACCHSGLVEEGLRWFYRM 348



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 122/254 (48%), Gaps = 11/254 (4%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C     +  G+Q     LK G +N  L  A+ L+  Y +CG   DA   F E+ 
Sbjct: 93  AIVLNMCGFLGMLKPGQQTQACALKSGAVND-LIAASALIDFYSKCGLWADACQAFSELR 151

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYGKQ 126
             +    N+MI  +   G  +++ ++F ++P K+  SWN +I GF++    L ALE   +
Sbjct: 152 HHDTIVLNSMITVYSNCGQIDEARRVFRLIPSKSVISWNSMIVGFSQNGHALDALELFCE 211

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM----KEPDDFCLSALISGYA 182
           +H      GL  D+V  SS+++  G     +S  Q+  +      + D    S+LI  Y 
Sbjct: 212 MHRL----GLQLDNVAISSVLSASGSICSVSSGEQIFGLAIALGLQSDHIVASSLIDLYC 267

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            CG + + RR+F    +   V+WNSM+ GY SN    EAL L   M+  G+     T   
Sbjct: 268 KCGNLANGRRIFSGIANPDEVLWNSMLIGYASNGYGLEALKLLDLMQSRGLKPSERTFVG 327

Query: 243 VLSACSSLGFLEHG 256
           VLSAC   G +E G
Sbjct: 328 VLSACCHSGLVEEG 341


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 204/608 (33%), Positives = 323/608 (53%), Gaps = 44/608 (7%)

Query: 16  NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW 75
           +T  S+   +Q H H LK G+ N T  +A +LL  Y       DA L+ D +P  N FS+
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDT-HLATKLLSHYANNMCFADATLVLDLVPEPNVFSF 82

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILV 133
           + +I  F K      +L  F+ M  +     N ++    KA   L+AL+  +Q+H    V
Sbjct: 83  STLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASV 142

Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
           +G D DS + SSLV++Y KC     A++V + M EPD    SAL++ YA  G +++A+R+
Sbjct: 143 SGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRL 202

Query: 194 FDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           F    D+      + WN MI+G+  +   +EA+L+F  M   G   D +T++SVL A   
Sbjct: 203 FSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGD 262

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  L  G  +HG+  K G++ D  V+SAL+D Y K    S+  ++F ++   D    N  
Sbjct: 263 LEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAF 322

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
           I   S  G++E +  +FR + ++ +    +SW SMI   SQNG  IEAL+LF  M    +
Sbjct: 323 IFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGV 382

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
           + +  ++  ++ AC NI++L  G+         G+ +D  + ++L+D Y KCG       
Sbjct: 383 KPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRI 442

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +A+ +F+ M+ +G KP II+FT +LSAC   GL
Sbjct: 443 CFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGL 502

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
            +EG  +F++M  +Y I+  +EHY+CMV L +RAG L +A  +I +MP   D  +W ++L
Sbjct: 503 TEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALL 562

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H +  LG   AE++ EL+P N   YI LS+I+A+ G W + + +RD+M+ K + K
Sbjct: 563 SSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRK 622

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 623 NPGCSWIE 630


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 203/608 (33%), Positives = 323/608 (53%), Gaps = 44/608 (7%)

Query: 16  NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW 75
           +T  S+   +Q H H LK G+ N T  +A +LL  Y       DA L+ D +P  N FS+
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDT-HLATKLLSHYANNMCFADATLVLDLVPEPNVFSF 82

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILV 133
           + +I  F K      +L  F+ M  +     N ++    KA   L+AL+  +Q+H    V
Sbjct: 83  STLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASV 142

Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
           +G D DS + SSLV++Y KC     A++V + M EPD    SAL++ YA  G +++A+R+
Sbjct: 143 SGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRL 202

Query: 194 FDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           F    D+      + WN MI+G+  +   +EA+L+F  M   G   D +T++SVL A   
Sbjct: 203 FSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGD 262

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  L  G  +HG+  K G++ D  V+SAL+D Y K    S+  ++F ++   D    N  
Sbjct: 263 LEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAF 322

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
           I   S  G++E +  +FR + ++ +    +SW SMI   SQNG  +EAL+LF  M    +
Sbjct: 323 IFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGV 382

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
           + +  ++  ++ AC NI++L  G+         G+ +D  + ++L+D Y KCG       
Sbjct: 383 KPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRI 442

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +A+ +F+ M+ +G KP II+FT +LSAC   GL
Sbjct: 443 CFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGL 502

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
            +EG  +F++M  +Y I+  +EHY+CMV L +RAG L +A  +I +MP   D  +W ++L
Sbjct: 503 TEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALL 562

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H +  LG   AE++ EL+P N   YI LS+I+A+ G W + + +RD+M+ K + K
Sbjct: 563 SSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRK 622

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 623 NPGCSWIE 630


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 208/594 (35%), Positives = 330/594 (55%), Gaps = 32/594 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL SC    S    + +H   L     +  + I NRL+ +Y +C    DA  LFD M
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQ-FSMEIFIQNRLIDVYGKCDCLDDARKLFDRM 76

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
           P+RN F+WN++I    K G  +++ +LF  MP+ +  SWN ++SGFA+ D    +LEY  
Sbjct: 77  PQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFV 136

Query: 126 QIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP----DDFCLSALISG 180
           ++H    L+N   F S L S+   L     D N   QV  ++ +     D +  SALI  
Sbjct: 137 KMHREDFLLNEYSFGSAL-SACAGLM----DLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+ CG +  A  VF    + + V WNS+I+ Y  N   +EAL +F +M  +G+  D  TL
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTL 251

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 299
           ASV+SAC+SL  L+ G Q+H    K     DD+++ +AL+D Y+K    ++A ++F  + 
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + + +   +M++ Y+    ++ A+ +F  M  ++++SWN++I G +QNG   EAL LF  
Sbjct: 312 IRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRL 371

Query: 360 MNKLD-----------LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
           + +             L+ D F   S+I       S+E G +VF ++     + D +   
Sbjct: 372 LKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMK----ERDCVSWN 427

Query: 409 SLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
           +++  Y + GY  +AL +F +M   G KP  +T   +L AC H GLV+EG+ +F +M+ +
Sbjct: 428 AIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSME-E 486

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           + + P  +HY+CMVDL  RAGCLNEA NLIE MP   D  +W S+L  C  HG+  +G+ 
Sbjct: 487 HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKH 546

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            AE+++E+DP N+  Y+ LS+++A  G W     +R +MR++ V K PGCSW +
Sbjct: 547 AAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIE 600



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 173/379 (45%), Gaps = 44/379 (11%)

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           H + R+  L ++S  A +L +C         + VH          ++ + + L+D Y K 
Sbjct: 4   HGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKC 63

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
               DA KLF  +   +T   N++I+V +  G +++A  +F +MP     SWNSM+ G +
Sbjct: 64  DCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFA 123

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           Q+    E+L+ F  M++ D  ++++S  S +SACA +  L +G QV A V+     +D  
Sbjct: 124 QHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVY 183

Query: 406 ISTSLVDFYCKCG---------------------------------YDALALFNEMRNTG 432
           + ++L+D Y KCG                                  +AL +F  M ++G
Sbjct: 184 MGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG 243

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           ++P  +T  +++SAC     +KEG +    +        ++   + +VD++A+   +NEA
Sbjct: 244 LEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEA 303

Query: 493 VNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549
             + ++M      ++  M S   R       + +  K+ +R       N  ++  L + +
Sbjct: 304 RRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQR-------NVVSWNALIAGY 356

Query: 550 ATSGEWEKS-SLIRDIMRE 567
             +GE E++  L R + RE
Sbjct: 357 TQNGENEEALRLFRLLKRE 375


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 204/608 (33%), Positives = 328/608 (53%), Gaps = 50/608 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C  +  + +G ++H   LK G       + N L+ +Y +CG   +   LF++M  R
Sbjct: 139 LIHACCKNFDVKLGSEVHGRILKCG-FGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHR 197

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  SWN MI  ++  G   ++L LF+      V+P  ++ +   L+S  AK  L  LE G
Sbjct: 198 DVISWNTMISCYVLKGMYREALDLFDEMLVSGVLP--DEITMVSLVSTCAK--LKDLEMG 253

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD-DFCL-SALISGYA 182
           K++H +I+ N L     L + LV++Y KCG  + A+ +L+   E + D  L + L+SGY 
Sbjct: 254 KRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYV 313

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
              K++ AR++FD+  + S V W +M+SGY+      E+L LF +MR   V+ D   L +
Sbjct: 314 KSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVT 373

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VLSAC  L   + G+ VH      G++ D  + +ALLD Y+K G   +A + F +L    
Sbjct: 374 VLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKS 433

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
               N+M+  +   G ++ A+  F  +P K ++SWN+M+    ++    E+ ++FC M  
Sbjct: 434 AASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQS 493

Query: 363 LDLRMDKFSLASVISACANISSLELG--EQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            +++ DK +L S++S+CA + +L  G    V+     IG+D+  ++ T+L+D Y KCG  
Sbjct: 494 SNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDA--MLGTALIDMYGKCGCV 551

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A+ L+ EM   GVKP  +TF A+L+AC
Sbjct: 552 EMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAAC 611

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV EG K+F+ ++  Y+I P I HY CMVDL  R G L E V  IE+MP E DV +
Sbjct: 612 SHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSI 671

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           WSS++R C +H +  L  +  +++IE+DP N  A++ LS+I+A +G W+  S +R  + E
Sbjct: 672 WSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHE 731

Query: 568 KHVGKLPG 575
             V K PG
Sbjct: 732 TGVPKQPG 739



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 169/406 (41%), Gaps = 74/406 (18%)

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH+H++   L  D  + S ++       + + A+Q+L+   EP+                
Sbjct: 54  IHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPE---------------- 97

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                          S++WN+++   +      E L  ++ M   GVL D ST   ++ A
Sbjct: 98  ---------------SIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHA 142

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C     ++ G +VHG   K G   +  + + L+  YSK G   + C+LF ++   D I  
Sbjct: 143 CCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISW 202

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           NTMI+ Y         K ++R                        EALDLF  M    + 
Sbjct: 203 NTMISCYV-------LKGMYR------------------------EALDLFDEMLVSGVL 231

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALAL 424
            D+ ++ S++S CA +  LE+G+++   +    L     +   LVD Y KCG   +A  L
Sbjct: 232 PDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGL 291

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
            +    + V   ++ +T ++S       + + ++ FD M      +  +  ++ M+  + 
Sbjct: 292 LSRCDESEVD--VVLWTTLVSGYVKSNKIDKARQLFDKMN-----ERSLVSWTTMMSGYV 344

Query: 485 RAGCLNEAVNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKV 527
           + G   E++ L +QM FE    D     ++L  CV   D  LGR V
Sbjct: 345 QGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSV 390


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 197/627 (31%), Positives = 331/627 (52%), Gaps = 80/627 (12%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  I+  A +LQ C   +++ +G Q+H   +  G+ +    + +RLL++Y + G   DA 
Sbjct: 7   DECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGV-DVCEFLGSRLLEVYCQTGCVEDAR 65

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
            +FD+M  RN FSW A++E +  LG  E++++LF +M  +     + +     KA  +L 
Sbjct: 66  RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 125

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
               GK ++ ++L  G + +S +  S+++++ KCG                         
Sbjct: 126 NYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCG------------------------- 160

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                 +M+ ARR F+        MWN M+SGY S  E  +AL +F KM   GV  ++ T
Sbjct: 161 ------RMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSIT 214

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSEL 298
           +AS +SAC++L  L HG+++HG+  KV  +D D++V ++L+D Y+K      A + F  +
Sbjct: 215 IASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMI 274

Query: 299 KVYDTILLNTMITV--YSSCG----------RIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
           K  D +  N M+ V  ++  G          R+  A  +F  +  + ++ WNS+I   +Q
Sbjct: 275 KQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQ 334

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           +G  + ALDL   MN  ++ ++  ++ S + AC+ +++L  G+++   +   GLD+   I
Sbjct: 335 SGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI 394

Query: 407 STSLVDFYCKCG---------------------------------YDALALFNEMRNTGV 433
             SL+D Y +CG                                  DA+ LF + R  G+
Sbjct: 395 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL 454

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           KP  ITFT +LSAC H GL++EG K+F  MK +Y +DP +E Y+CMVDL +RAG  NE +
Sbjct: 455 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 514

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             IE+MPFE +  +W S+L  C  H +  L    A  + EL+P+++  Y+ +++I++ +G
Sbjct: 515 EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 574

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSWAD 580
            WE ++ IR +M+E+ V K PGCSW +
Sbjct: 575 RWEDAAKIRCLMKERGVTKPPGCSWIE 601


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 206/617 (33%), Positives = 316/617 (51%), Gaps = 52/617 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL+S     ++   +  H   LK  +   T  + N L+  Y R G   DA  +FDE+
Sbjct: 23  LADLLRSAP---NLSGARAAHARILKSPVAGETF-LLNTLVSTYARLGRLRDARRVFDEI 78

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA----ALEY 123
           P RN FS+NA++  + +LG  +++  LF  +P  +  S+N +++  A+        AL +
Sbjct: 79  PLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRF 138

Query: 124 GKQIHSHILV-NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-SALISGY 181
              +H+   V N   F S L +       + G+    + ++      DD  + SAL+  Y
Sbjct: 139 LAAMHADDFVLNAYSFASALSACAAEKDSRTGE--QVHGLVARSPHADDVHIRSALVDMY 196

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           A C +  DARRVFD   + + V WNS+I+ Y  N    EAL+LF +M   G   D  TL+
Sbjct: 197 AKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLS 256

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           SV+SAC+ L     G+QVH H  K   + DD+++ +AL+D Y+K G   +A  +F  +  
Sbjct: 257 SVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPS 316

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
              +   +++T Y+    +EDA+ +F  M  K++I+WN +I   +QNG   EA+ LF  +
Sbjct: 317 RSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL 376

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTI------IGLDSDQIISTSLVDFY 414
            +  +    ++  +V++AC NI+ L+LG+Q    V         G +SD  +  SLVD Y
Sbjct: 377 KRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMY 436

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            K G                                  DAL LF  M  +   P  +T  
Sbjct: 437 LKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMI 496

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            +LSAC H GLV EG+++F +M   + I P  +HY+CMVDL  RAG L EA  LI  MP 
Sbjct: 497 GVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPM 556

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           E D  +W+S+L  C  H +  LG   A R+ ELDP+N+  Y+ LS+++A  G+W +   +
Sbjct: 557 EPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRV 616

Query: 562 RDIMREKHVGKLPGCSW 578
           R  M+++ V K PGCSW
Sbjct: 617 RRSMKDRGVSKQPGCSW 633



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 188/442 (42%), Gaps = 85/442 (19%)

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H   LV  L   S L   L +     G   +  ++L      + F L+ L+S YA  G++
Sbjct: 9   HGQELVAHLRASSPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRL 68

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH--------------------- 226
            DARRVFD     ++  +N+++S Y       EA  LF                      
Sbjct: 69  RDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHG 128

Query: 227 ------------KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
                        M  +  + +A + AS LSAC++      G+QVHG   +    DDV +
Sbjct: 129 RGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHI 188

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            SAL+D Y+K   P DA ++F  +   + +  N++IT Y                     
Sbjct: 189 RSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCY--------------------- 227

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
                      QNG   EAL LF  M       D+ +L+SV+SACA +++   G QV A 
Sbjct: 228 ----------EQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAH 277

Query: 395 -VTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
            V    L  D +++ +LVD Y KCG  ++A  +F+ M +     +I++ T+IL+      
Sbjct: 278 MVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR----SIVSETSILTGYAKSA 333

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS- 510
            V++ Q  F  M     ++  +  ++ ++  +A+ G   EA+ L  Q+  ++   +W + 
Sbjct: 334 NVEDAQVVFSQM-----VEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDS---IWPTH 385

Query: 511 -----ILRGCVAHGDKGLGRKV 527
                +L  C    D  LG++ 
Sbjct: 386 YTYGNVLNACGNIADLQLGQQA 407


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 198/587 (33%), Positives = 313/587 (53%), Gaps = 72/587 (12%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAK 115
           +L +FD +   N F WN M+  +++    EK+L L+ +M + N    ++++ +++   A 
Sbjct: 94  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA- 152

Query: 116 ADLAALEY-GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
             +  LE+ GK+IH H+L  G D D  + ++L+N+Y  CG+   A ++ +     D    
Sbjct: 153 --VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 210

Query: 175 SALISGYANCGKMNDARRVFDRTT-------------------------------DTSSV 203
           +++++GY   G + +A+ +FD+                                 +   V
Sbjct: 211 NSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMV 270

Query: 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
            W+++ISGY  N    EAL++F +M  NG+  D   + SVLSAC+ L  ++ GK +HG  
Sbjct: 271 SWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLV 330

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
            ++G+   V + +AL+  YS  G   DA KLF+     D I  N+MI+    CG +E A+
Sbjct: 331 IRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKAR 390

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
            +F  MP K ++SW+++I G +Q+    E L LF  M    +R D+  L SVISAC +++
Sbjct: 391 ALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLA 450

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFN--------------- 426
           +L+ G+ V A +   GL  + I+ T+L+D Y KCG   +AL +FN               
Sbjct: 451 ALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALII 510

Query: 427 ----------------EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
                           EM+N GV P  ITF  +L AC H GLV EG+  F +M  ++ I+
Sbjct: 511 GLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIE 570

Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAER 530
           P ++HY CMVDL  RAG LNEA  LIE MP   DV  W ++L  C  HGD  +G +V  +
Sbjct: 571 PNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRK 630

Query: 531 MIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +IEL P++   ++ LS+IFA+ G+WE    +R +M+++ V K PGCS
Sbjct: 631 LIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCS 677



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 235/517 (45%), Gaps = 106/517 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++Q+C        GK++H H LK G  +S + + N L+ MY  CGN  DA  LFDE P  
Sbjct: 147 VVQACAVRLLEFGGKEIHDHVLKVG-FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVL 205

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND--------------------------- 103
           +  SWN+++ G++K G  E++  +F+ MPQ+N                            
Sbjct: 206 DSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMD 265

Query: 104 ----FSWNMLISGFAK---------------------------------ADLAALEYGKQ 126
                SW+ LISG+ +                                 A L+ ++ GK 
Sbjct: 266 EKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKM 325

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  ++  G++    L ++L+++Y   G+   A ++ N     D    +++ISG   CG 
Sbjct: 326 IHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGS 385

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  AR +FD   +   V W+++ISGY  ++  +E L LFH+M+   +  D + L SV+SA
Sbjct: 386 VEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISA 445

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ L  L+ GK VH +  K G+  +VI+ + LLD Y K                      
Sbjct: 446 CTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMK---------------------- 483

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG +E+A  +F  M  K + SWN++I+GL+ NG    +LD+F  M    + 
Sbjct: 484 ---------CGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVI 534

Query: 367 MDKFSLASVISACANISSLELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKCGYDALALF 425
            ++ +   V+ AC ++  ++ G   FA  +   G++ +      +VD   + G     L 
Sbjct: 535 PNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAG-----LL 589

Query: 426 NE----MRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
           NE    + +  + P + T+ A+L AC   G  + G++
Sbjct: 590 NEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGER 626



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 5/190 (2%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C    ++  GK +H +  K G L   + +   LL MYM+CG   +AL +F+ M
Sbjct: 439 LVSVISACTHLAALDQGKWVHAYIRKNG-LKVNVILGTTLLDMYMKCGCVENALEVFNGM 497

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             +   SWNA+I G    G  E+SL +F+ M         +   G   A   +  ++ G+
Sbjct: 498 EEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGR 557

Query: 126 -QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYAN 183
               S I  +G++ +      +V+L G+ G  N A +++  M   PD     AL+     
Sbjct: 558 CHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKK 617

Query: 184 CGKMNDARRV 193
            G      RV
Sbjct: 618 HGDTEMGERV 627


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 213/651 (32%), Positives = 334/651 (51%), Gaps = 72/651 (11%)

Query: 1   MDTRIDYLARLLQ-SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           + T ++    LLQ S N  +     + +H   +K G++ S   + N L+ +Y + G    
Sbjct: 9   LSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVY-LMNNLMNVYSKTGYALH 67

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---- 115
           A  LFDEMP R  FSWN ++  + K G  + S + F+ +PQ++  SW  +I G+      
Sbjct: 68  ARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQY 127

Query: 116 --------------------------ADLAA---LEYGKQIHSHILVNGLDFDSVLGSSL 146
                                     A +AA   LE GK++HS I+  GL  +  + +SL
Sbjct: 128 HKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSL 187

Query: 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
           +N+Y KCGD   A  V + M   D    +A+I+ +   G+M+ A   F++  +   V WN
Sbjct: 188 LNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWN 247

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACK 265
           SMISGY     D  AL +F KM R+ +L  D  TLASVLSAC++L  L  G+Q+H H   
Sbjct: 248 SMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVT 307

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL--LNTMITVYSSCGRIEDAK 323
            G     IV +AL+  YS+ G    A +L  +    D  +     ++  Y   G + +AK
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAK 367

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
           +IF ++ ++ +++W +MIVG  Q+G   EA++LF +M   + R + ++LA+++S  ++++
Sbjct: 368 NIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLA 427

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------- 418
           SL  G+Q+       G      +S +L+  Y K G                         
Sbjct: 428 SLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMI 487

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                     +AL LF  M   G++P  IT+  + SAC H GLV +G+++FD MK    I
Sbjct: 488 IALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKI 547

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P + HY+CMVDLF RAG L EA   IE+MP E DV  W S+L  C  + +  LG+  AE
Sbjct: 548 IPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAE 607

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           R++ L+PEN+ AY  L+++++  G+WE+++ IR  M++  V K  G SW +
Sbjct: 608 RLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 191/605 (31%), Positives = 306/605 (50%), Gaps = 81/605 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C    S+   K LH H ++       + + N+L+ +Y++ G+  +A  +FDEMP +
Sbjct: 70  LLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVK 129

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           N  SW AMI  + +  H +++L  F    +V  Q N F++  ++   A  DL  L    +
Sbjct: 130 NVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILP--ACTDLEVL---GE 184

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
            H  I+  G + +  +G+ LV++Y K G    A ++ + M + D    +A+I+GY   G 
Sbjct: 185 FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGL 244

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + DA ++F        + WN+M++GY    +   A+ LF KM                  
Sbjct: 245 IEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQ--------------- 289

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
                                   +++  + ++  Y + G   +A KLF  +   + I  
Sbjct: 290 ------------------------NLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISW 325

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +I+ ++  G++E+A  +F+TMP  +++SWN+MI G SQNG    AL LF  M  +D++
Sbjct: 326 NAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMK 385

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            +  + A V+ ACA ++ LE G +    V   G  SD ++  +LV  Y KCG        
Sbjct: 386 PNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKV 445

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     ++L LF +M+ TG+KP  +TF  +LSAC H GLV
Sbjct: 446 FDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLV 505

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            EG+++FD M   YHI P +EHY CM+DL  RAGC +EA +LI +MP + D  MW S+L 
Sbjct: 506 DEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLS 565

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  LG KVA+ +I L+P+N   Y+ LS+I+A +G W+    +R+ M+++ V K 
Sbjct: 566 ACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKK 625

Query: 574 PGCSW 578
            GCSW
Sbjct: 626 LGCSW 630



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 167/354 (47%), Gaps = 50/354 (14%)

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           EAL +   M  NG+   +ST  S+L  C +   L   K +H H  +              
Sbjct: 47  EALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ-------------- 92

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
                           ++ +  D  L N ++++Y   G + +A+ +F  MP K+++SW +
Sbjct: 93  ----------------TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTA 136

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           MI   +++    EAL  F  M  + ++ + F+ AS++ AC   + LE+  +    +   G
Sbjct: 137 MIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPAC---TDLEVLGEFHDEIVKGG 193

Query: 400 LDSDQIISTSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
            +S+  +   LVD Y K  C   A  LF++M    V    +++ A+++     GL+++  
Sbjct: 194 FESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDV----VSWNAMIAGYVQNGLIEDAL 249

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           K F  +  +     ++  ++ M+  +A+ G +  AV L E+MP E ++  W++++ G V 
Sbjct: 250 KLFQEIPKR-----DVITWNTMMAGYAQCGDVENAVELFEKMP-EQNLVSWNTMIAGYVQ 303

Query: 518 HGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +G      K A ++ ++ PE N  ++  + S FA +G+ E++  +   M E +V
Sbjct: 304 NGSV----KEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNV 353


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 325/599 (54%), Gaps = 73/599 (12%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  G++LH H ++  +LNS + + + L+ MY +CG   +A  +F  +  RN  S+NA++ 
Sbjct: 393 IGKGRELHGHLVRN-LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451

Query: 81  GFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
           G+++ G  E++L+L++ M      Q + F++  L++    A+      G+QIH+H++   
Sbjct: 452 GYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLT--LCANQRNDNQGRQIHAHLI--- 506

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
                                  AN   N++ E +      L+  Y+ CG++N A+ +F+
Sbjct: 507 ----------------------RANITKNIIVETE------LVHMYSECGRLNYAKEIFN 538

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           R  + ++  WNSMI GY  N E  EAL LF +M+ NG+  D  +L+S+LS+C SL   + 
Sbjct: 539 RMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQK 598

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G+++H    +  + ++ I+   L+D Y+K G    A K++ +    D IL N M++ + +
Sbjct: 599 GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVN 658

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
            GR  DAK++F  M  ++   WNS++ G +  G   E+ + F  M + D+  D  ++ ++
Sbjct: 659 SGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTI 718

Query: 376 ISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCG---------------- 418
           ++ C+++ +LE G+Q+ + +   G ++   ++ T+LVD Y KCG                
Sbjct: 719 VNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKN 778

Query: 419 -----------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                             +AL L+ EM   G+ P  +TF AILSAC H GLV+EG + F 
Sbjct: 779 IVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFT 838

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
           +M+  Y+I+ + EHY+CMVDL  RAG L +A   +E+MP E +V  W ++L  C  H D 
Sbjct: 839 SMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDM 898

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +GR  A+R+ ELDP+N   Y+ +S+I+A +G W++   IR +M+ K V K PG SW +
Sbjct: 899 DMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIE 957



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 146/531 (27%), Positives = 237/531 (44%), Gaps = 110/531 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A  L+ C    S   GKQ+H   +  G    T  + N L+ MY +C +    L +FDEM
Sbjct: 279 FASALRVCGALRSRDGGKQVHSKLIACGFKGDTF-VGNALIDMYAKCDDEESCLKVFDEM 337

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG---FAKADLAALEYG 124
             RN  +WN++I    + GH   +L LF  M Q++ +  N    G    A A LA +  G
Sbjct: 338 GERNQVTWNSIISAEAQFGHFNDALVLFLRM-QESGYKSNRFNLGSILMASAGLADIGKG 396

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +++H H++ N L+ D +LGS+LV++Y KCG    A+QV   + E ++   +AL++GY   
Sbjct: 397 RELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQE 456

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASV 243
           GK                                 EAL L+H M+  +G+  D  T  ++
Sbjct: 457 GKAE-------------------------------EALELYHDMQSEDGIQPDQFTFTTL 485

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L+ C++      G+Q+H H  +  +  ++IV + L+  YS+                   
Sbjct: 486 LTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSE------------------- 526

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       CGR+  AK IF  M  ++  SWNSMI G  QNG   EAL LF  M   
Sbjct: 527 ------------CGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLN 574

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA 423
            ++ D FSL+S++S+C ++S  + G ++   +    ++ + I+   LVD Y KCG    A
Sbjct: 575 GIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYA 634

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
              ++ +  +K  +I    ++SA                                    F
Sbjct: 635 W--KVYDQTIKKDVILNNVMVSA------------------------------------F 656

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
             +G  N+A NL +QM  + +  +W+SIL G   + +KGL ++     +E+
Sbjct: 657 VNSGRANDAKNLFDQME-QRNTALWNSILAG---YANKGLKKESFNHFLEM 703



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 140/562 (24%), Positives = 239/562 (42%), Gaps = 104/562 (18%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD---ALLLFD 65
           + L+Q C   +S   GK +H   +  G  N    +  ++L +Y R G   D   A  LF+
Sbjct: 75  SSLIQDCIDSNSFQRGKSIHTQMISNG-YNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG- 124
           EMP RN  +WN MI  + ++    + L+L+  M    +FS         KA +A  + G 
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGG 193

Query: 125 -KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            +Q+ S ++  GL+ +  +G                                AL+ GYA 
Sbjct: 194 VRQLQSSVVKAGLNCNLFVG-------------------------------GALVDGYAR 222

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G M+DA    D    TS V WN++I+GY+      EA  +F +M + GV  D  T AS 
Sbjct: 223 FGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASA 282

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L  C +L   + GKQVH      G   D  V +AL+D Y+K        K+F E+   + 
Sbjct: 283 LRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQ 342

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           +  N++I+  +  G   D                               AL LF  M + 
Sbjct: 343 VTWNSIISAEAQFGHFND-------------------------------ALVLFLRMQES 371

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
             + ++F+L S++ A A ++ +  G ++   +    L+SD I+ ++LVD Y KCG     
Sbjct: 372 GYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEA 431

Query: 420 -----------------------------DALALFNEMRNT-GVKPTIITFTAILSACDH 449
                                        +AL L+++M++  G++P   TFT +L+ C +
Sbjct: 432 HQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCAN 491

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
                +G++   A   + +I   I   + +V +++  G LN A  +  +M  E +   W+
Sbjct: 492 QRNDNQGRQ-IHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWN 549

Query: 510 SILRGCVAHGDKGLGRKVAERM 531
           S++ G   +G+     ++ ++M
Sbjct: 550 SMIEGYQQNGETQEALRLFKQM 571



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 185/451 (41%), Gaps = 101/451 (22%)

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           D  + + GK IH+ ++ NG + D+ L + ++ LY + G               DD C   
Sbjct: 83  DSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCL-------------DDLCY-- 127

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
                        AR++F+   + +   WN+MI  Y   ++  E L L+ +MR +G   D
Sbjct: 128 -------------ARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSD 174

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             T  SV+ AC ++  +   +Q+     K G+  ++ V  AL+D Y++ G   DA     
Sbjct: 175 KFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLD 234

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           E++                                 S+++WN++I G  +  S  EA  +
Sbjct: 235 EIE-------------------------------GTSVVTWNAVIAGYVKILSWEEAWGI 263

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M K+ +  D F+ AS +  C  + S + G+QV +++   G   D  +  +L+D Y K
Sbjct: 264 FDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAK 323

Query: 417 C-------------------------------GY--DALALFNEMRNTGVKPTIITFTAI 443
           C                               G+  DAL LF  M+ +G K       +I
Sbjct: 324 CDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSI 383

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L A      + +G++    +     ++ +I   S +VD++++ G + EA  +   +  E 
Sbjct: 384 LMASAGLADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSKCGMVEEAHQVFRSL-LER 441

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           +   ++++L G V  G        AE  +EL
Sbjct: 442 NEVSYNALLAGYVQEGK-------AEEALEL 465



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 100/188 (53%), Gaps = 12/188 (6%)

Query: 1   MDTRIDY----LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN 56
           +++ I+Y    +  ++  C++  ++  G QLH   +KKG +N ++ +   L+ MY +CG 
Sbjct: 704 LESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGA 763

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG 112
            T A  +FD M  +N  SWNAMI G+ K G  +++L L+  MP+K    N+ ++  ++S 
Sbjct: 764 ITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSA 823

Query: 113 FAKADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPD 170
            +   L  +E G +I + +  +  ++  +   + +V+L G+ G    A + +  M  EP+
Sbjct: 824 CSHTGL--VEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPE 881

Query: 171 DFCLSALI 178
                AL+
Sbjct: 882 VSTWGALL 889


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 200/639 (31%), Positives = 312/639 (48%), Gaps = 100/639 (15%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           Y A L   C   +   V K+LH   ++  + N    + N L+  Y + G+  +A  +FD 
Sbjct: 8   YTAALKFCCEARNRAQV-KKLHCRIIRT-LTNPETFLYNNLINTYGKLGDLKNARNVFDH 65

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA------ 120
           +P+ N FSWN ++  + KLG+ +   ++F+ MP  +  SWN L+SG+A   L +      
Sbjct: 66  IPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVY 125

Query: 121 ----------------------------LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 152
                                       ++ G+QIH  I   G      +GS LV++Y K
Sbjct: 126 NMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAK 185

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
            G  N AN++   + E +    + +I+G   C  + +A ++FD   +  S+ W ++I+G 
Sbjct: 186 TGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGL 245

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
             N    EA+  F +M   G   D  T  SVL+AC     L+ GKQ+H +  +    D++
Sbjct: 246 TQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNI 305

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            V SALLD Y K                               C  ++ A+ +FR M +K
Sbjct: 306 FVGSALLDMYCK-------------------------------CRNVKYAEAVFRKMRHK 334

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
           ++ISW +M+VG  QNG   EA+ +FC+M + ++  D F+L SVIS+CAN++SLE G Q  
Sbjct: 335 NVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFH 394

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------------- 419
            +    GL     +S +L+  Y KCG                                  
Sbjct: 395 GQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKAN 454

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
           + ++LF  M   G+ P  +TF  +LSAC   GLV++G  +F+ M  ++ I P  +HY+CM
Sbjct: 455 ETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCM 514

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           +DL +RAG L EA N I QMPF  D   W+++L  C  +G+  +G+  AE + +L+P+N 
Sbjct: 515 IDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNP 574

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            +YI LSSI+A  G+W+  + +R  MRE  V K PG SW
Sbjct: 575 ASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSW 613


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 203/666 (30%), Positives = 336/666 (50%), Gaps = 87/666 (13%)

Query: 1   MDTRI---DYLARLLQSCNTH-HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN 56
           +D R+    Y A+L   C  +  S  + + +H H +  G       I NRL+ +Y +  +
Sbjct: 5   LDVRVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIASG-FKLRGHIVNRLIDIYWKSSD 63

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--QKNDFSWNMLISGFA 114
              A  LFDE+P+ +  +   +I  +  LG+ + + ++FN  P   ++   +N +I+G++
Sbjct: 64  FVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYS 123

Query: 115 KAD--------LAALEYGK--------------------------QIHSHILVNGLDFDS 140
             +          A+ +                            Q+H  ++  G++   
Sbjct: 124 HMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFP 183

Query: 141 VLGSSLVNLYGKCGD---------FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
            + ++L+++Y KC             SA ++ + M + ++F  + LI+GY   G +  AR
Sbjct: 184 AVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAR 243

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
            + D  T+   + WN+MISGY+ +    +AL LF KMR  GV  D ST  SV+SAC+  G
Sbjct: 244 EILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGG 303

Query: 252 FLEHGKQVHGHACKVGVIDD----VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           F   GKQVH +  K  +  D    + V + L+  Y K G    A K+F E+ V D I  N
Sbjct: 304 FFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWN 363

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           T+++ Y + GR+E+AK  F  MP K+L++W  MI GL+QNG   +AL LF  M       
Sbjct: 364 TLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEP 423

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------- 417
           + ++ A  I+AC+ + +LE G Q+ A++  +G DS   +  +++  Y +C          
Sbjct: 424 NDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMF 483

Query: 418 -----------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                  G  A+ L+ +M   G+ P   TF  +LSAC H GLV+
Sbjct: 484 LTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVE 543

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG ++F++M   Y I P  +HY+ M+DLF RAG  ++A N+I+ MPFEA   +W ++L G
Sbjct: 544 EGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAG 603

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  HG+  LG + AE++ +L P++   Y+ LS+++A+ G W   +  R +MR++ V K P
Sbjct: 604 CRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEP 663

Query: 575 GCSWAD 580
            CSW +
Sbjct: 664 ACSWTE 669


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 173/500 (34%), Positives = 281/500 (56%), Gaps = 35/500 (7%)

Query: 116 ADLAALEYGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           AD  AL  GK++H H+ + GL    + L + L+N+Y KCG    A +V + M   + +  
Sbjct: 70  ADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSW 129

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + ++SGYA  G +  AR++FD+  +   V WN+M+  +       EAL  + + R+ G+ 
Sbjct: 130 NNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQ 189

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  + A VL+ C  L  +   +QVHG     G + +V+++S++LD Y K G+  DA KL
Sbjct: 190 CNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKL 249

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F E+   D +   TM++ Y+  G ++ A  +F  MP K+ +SW ++I G ++NG   +AL
Sbjct: 250 FDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKAL 309

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +LF  M    +R D+F+ +S + ACA+I+SL+ G+Q+ A +  I    + I+ ++L+D Y
Sbjct: 310 ELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMY 369

Query: 415 CK----------------------------------CGYDALALFNEMRNTGVKPTIITF 440
            K                                  CG +A+ + ++M  +G KP  ITF
Sbjct: 370 SKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITF 429

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             IL+AC H GLV++G  +F++M   Y I P  EHY+C++DL  RAGC  E ++ +E+MP
Sbjct: 430 VVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMP 489

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
           ++ D  +W+++L  C  HG   LGRK AER+IEL+P+++ AY+ LSSI+A  G WE    
Sbjct: 490 YKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQK 549

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +M E+ V K    SW +
Sbjct: 550 VRQLMNERQVKKERAISWLE 569



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/493 (28%), Positives = 235/493 (47%), Gaps = 69/493 (13%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D+R   LA LLQ C    ++  GK++HLH    G+      ++N L+ MY +CG   +A
Sbjct: 57  LDSRT--LASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEA 114

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI---------- 110
             +FD+M  RN +SWN M+ G+ KLG  + + +LF+ MP+K+  SWN ++          
Sbjct: 115 RKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWD 174

Query: 111 ----------------SGFAKADLAAL-----EYG--KQIHSHILVNGLDFDSVLGSSLV 147
                           +GF+ A +  +     E G  +Q+H  ILV G   + VL SS++
Sbjct: 175 EALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVL 234

Query: 148 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
           + Y KCG    A ++ + M   D    + ++SGYA  G M  A  +F    + + V W +
Sbjct: 235 DAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTA 294

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           +ISGY  N    +AL LF KM    V  D  T +S L AC+S+  L+HGKQ+H +  ++ 
Sbjct: 295 LISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRIN 354

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
              + IV SAL+D YSK                               CG +   + +F 
Sbjct: 355 FQPNTIVVSALIDMYSK-------------------------------CGSLGIGRKVFD 383

Query: 328 TMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
            M NK  ++ WN++I  L+Q+G   EA+ +  +M +   + DK +   +++AC++   ++
Sbjct: 384 LMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQ 443

Query: 387 LGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILS 445
            G   F  ++   G+   Q     L+D   + G     + +++     KP    + A+L 
Sbjct: 444 QGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFE-EVMDQLEKMPYKPDDRVWNALLG 502

Query: 446 ACDHCGLVKEGQK 458
            C   G ++ G+K
Sbjct: 503 VCRIHGHIELGRK 515



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 21/212 (9%)

Query: 326 FRTMPNKSLIS--WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
           FRT P K          IV L +     EA+    N+ +  LR+D  +LAS++  CA+  
Sbjct: 14  FRTNPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSR 73

Query: 384 SLELGEQVFARVTIIGLDSD-QIISTSLVDFYCKCG--YDALALFNEM--RNTGVKPTII 438
           +L  G++V   + + GL      +S  L++ Y KCG   +A  +F++M  RN      + 
Sbjct: 74  ALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARN------LY 127

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL--- 495
           ++  +LS     G++K  +K FD M      + ++  ++ MV   A+ G  +EA+     
Sbjct: 128 SWNNMLSGYAKLGMIKPARKLFDKMP-----EKDVVSWNTMVIAHAQCGYWDEALRFYSE 182

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
             Q+  + +   ++ +L  CV   + GL R+V
Sbjct: 183 FRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQV 214


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 192/616 (31%), Positives = 321/616 (52%), Gaps = 77/616 (12%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI +L+ +L++CN +  +   +++H   +K   + + + +A  L+ MY +CG  + A  +
Sbjct: 179 RITFLS-ILKACNNYSMLEKAREIHT-VVKASGMETDVAVATALITMYSKCGEISLACEI 236

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLA 119
           F +M  RN  SW A+I+   +     ++ +L+  M Q     N  ++  L++     +  
Sbjct: 237 FQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPE-- 294

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL  G++IHSHI   GL+ D V+ ++L+ +Y KC                          
Sbjct: 295 ALNRGRRIHSHISERGLETDVVVANALITMYCKC-------------------------- 328

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI-SNNEDTEAL----LLFHKMRRNGVL 234
              NC  + DAR  FDR +    + W++MI+GY  S  +D E+L     L  +MRR GV 
Sbjct: 329 ---NC--IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVF 383

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  T  S+L ACS  G LE G+Q+H    KVG   D  + +A+ + Y+K G   +A ++
Sbjct: 384 PNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQV 443

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           FS+++  + +   +++T+Y  CG +  A+ +F  M  ++++SWN MI G +Q+G   +  
Sbjct: 444 FSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVF 503

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +L  +M     + D+ ++ S++ AC  +S+LE G+ V A    +GL+SD +++TSL+  Y
Sbjct: 504 ELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMY 563

Query: 415 CKCGY---------------------------------DALALFNEMRNTGVKPTIITFT 441
            KCG                                  +A+ LF  M    V P  ITFT
Sbjct: 564 SKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFT 623

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           A++SAC   GLV+EG++ F  M+  + + P  +HY CMVDL  RAG L EA   I++MP 
Sbjct: 624 AVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPC 683

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           E D+ +W ++L  C +H +  L    A  ++ L+P NA  Y+ LS+I+A +G W+ S+ +
Sbjct: 684 EPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKV 743

Query: 562 RDIMREKHVGKLPGCS 577
           R +M +K + K  G S
Sbjct: 744 RKVMDDKGLKKDRGES 759



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 220/517 (42%), Gaps = 113/517 (21%)

Query: 84  KLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
           K G  ++++QL  ++ Q+    N  ++  +I   AK  L   E GK +H  +   GL  D
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAK--LRRFEDGKMVHKQLDELGLAID 112

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
             LG+SL+N Y K GD  S  QV                               F R T 
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQV-------------------------------FRRMTL 141

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
              V W+SMI+ Y  NN   +A   F +M+   +  +  T  S+L AC++   LE  +++
Sbjct: 142 RDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREI 201

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H      G+  DV VA+AL+  YSK G  S AC+                          
Sbjct: 202 HTVVKASGMETDVAVATALITMYSKCGEISLACE-------------------------- 235

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
                IF+ M  ++++SW ++I   +Q+    EA +L+  M +  +  +  +  S++++C
Sbjct: 236 -----IFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC 290

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------------------- 417
               +L  G ++ + ++  GL++D +++ +L+  YCKC                      
Sbjct: 291 NTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWS 350

Query: 418 ----GY------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF- 460
               GY            +   L   MR  GV P  +TF +IL AC   G +++G++   
Sbjct: 351 AMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHA 410

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
           +  K  +  D  ++  + + +++A+ G + EA  +  +M    +V  W+S+L   +  GD
Sbjct: 411 EISKVGFESDRSLQ--TAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLLTMYIKCGD 467

Query: 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
                KV     E+   N  ++  + + +A SG+  K
Sbjct: 468 LTSAEKV---FSEMSTRNVVSWNLMIAGYAQSGDIAK 501



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 106/237 (44%), Gaps = 38/237 (16%)

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
           L + G   EA+ L   + +  L ++  +   +I  CA +   E G+ V  ++  +GL  D
Sbjct: 53  LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAID 112

Query: 404 QIISTSLVDFYCKCG---------------------------------YDALALFNEMRN 430
             +  SL++FY K G                                   A   F  M++
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
             ++P  ITF +IL AC++  ++++ ++    +K    ++ ++   + ++ ++++ G ++
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVVK-ASGMETDVAVATALITMYSKCGEIS 231

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQL 545
            A  + ++M  E +V  W++I++    H       ++ E+M++  + P NA  ++ L
Sbjct: 232 LACEIFQKMK-ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISP-NAVTFVSL 286


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 315/620 (50%), Gaps = 58/620 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL+S     S+   +  H   LK  +   T  + N L+  Y R G   +A  +FD +
Sbjct: 23  LADLLRSAP---SLPGARAAHGCVLKSPVAGETF-LLNTLVSTYARLGRLREARRVFDGI 78

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA----ALEY 123
           P RN FS+NA++  + +LG  +++  LF  +P  +  S+N +++  A+        AL +
Sbjct: 79  PLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRF 138

Query: 124 GKQIHSHILV-NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM-KEP--DDFCL-SALI 178
              +H+   V N   F S L +          D  +  QV  ++ + P  DD  + +AL+
Sbjct: 139 LAAMHADDFVLNAYSFASALSACAAE-----KDLRTGEQVHGLVARSPHADDVHIGTALV 193

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
             YA C +  DARRVFD   + + V WNS+I+ Y  N    EAL+LF +M   G   D  
Sbjct: 194 DMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEV 253

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSE 297
           TL+SV+SAC+ L     G+QVH H  K   + DD+++ +AL+D Y+K G   +A  +F  
Sbjct: 254 TLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDS 313

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           +     +   +++  Y+    +EDA+ +F  M  K++I+WN +I   +QNG   EA+ LF
Sbjct: 314 MPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLF 373

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI------IGLDSDQIISTSLV 411
             + +  +    ++  +V++AC NI+ L+LG+Q    V         G +SD  +  SLV
Sbjct: 374 VQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLV 433

Query: 412 DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
           D Y K G                                  DAL LF  M  +   P  +
Sbjct: 434 DMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSV 493

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           T   +LSAC H GLV EG++ F  M   + I P  +HY+CMVDL  RAG L EA  LI+ 
Sbjct: 494 TMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKD 553

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MP E D  +W+S+L  C  H +  LG + A R+ ELDPEN+  Y+ LS+++A  G+W   
Sbjct: 554 MPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADV 613

Query: 559 SLIRDIMREKHVGKLPGCSW 578
             +R  M+++ V K PGCSW
Sbjct: 614 FRVRRSMKDRGVSKQPGCSW 633


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 199/649 (30%), Positives = 331/649 (51%), Gaps = 77/649 (11%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT----DAL 61
           D+ ARLLQ   T  +   G+ +H H +K G+L S   + N LL  Y R G       +A 
Sbjct: 26  DHFARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAY-LCNNLLSYYARAGVGRGCFHEAR 84

Query: 62  LLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--- 116
            LFD++P  RRN F+WN+++  + K G    +  +F  MP+++  SW +++ G  +A   
Sbjct: 85  RLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRF 144

Query: 117 -------------DLAALEY-----------------GKQIHSHILVNGLDFDSVLGSSL 146
                         LA  ++                 G+++HS ++  GL     + +S+
Sbjct: 145 WDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSV 204

Query: 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
           + +YGKCGD  +A  V   MK   +   +A++S Y + G+M+ A  +F+   + S V WN
Sbjct: 205 LYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWN 264

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACK 265
           ++I+GY  N  D  AL  F +M     +E D  T+ SVLSAC++L  L+ GKQ+H +  +
Sbjct: 265 AIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILR 324

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD--TILLNTMITVYSSCGRIEDAK 323
            G+     + +AL+ TY+K G    A ++  +  V D   I    ++  Y   G  + A+
Sbjct: 325 TGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAR 384

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
            +F  M N+ +I+W +MIVG  QNG   EA++LF +M +     +  +LA+V+SACA+++
Sbjct: 385 EVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLA 444

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD--------------- 420
            L  G+Q+  R      +    +S +++  Y + G        +D               
Sbjct: 445 YLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMI 504

Query: 421 -----------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                      A+ LF EM   GVKP  +T+  + SAC H G + +G+++++ M  ++ I
Sbjct: 505 VALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGI 564

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            PE+ HY+CMVDL ARAG L EA   I++MP   D  +W S+L  C    +  L    AE
Sbjct: 565 VPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAE 624

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +++ +DP+N+ AY  L+++++  G W  ++ I  + ++K V K  G SW
Sbjct: 625 KLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSW 673


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 196/609 (32%), Positives = 319/609 (52%), Gaps = 67/609 (11%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S L ++N ++  Y++ GN   A LLFDEMP RN  SW+A+I G MK G  E+S+  F   
Sbjct: 85  SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERN 144

Query: 99  PQKNDFSWNMLISGFAKADL--AALE-YGKQIHSHILVNGLDFDSVL------------- 142
           P +N  SW   ISGF +  L   AL+ + + + S +  N + F SV+             
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 143 -----------------GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
                             +SL+ L  + G+ + A +V + M++ D    +A++  Y   G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            + +ARR+FD   + + + W++MI+ Y  +    EAL LF KM + G   + S  A  LS
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLS 324

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A +SL  L  G  +HGH  K+G+  DV + S+L+D Y K G P D   +F  +   + + 
Sbjct: 325 ALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVC 384

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N+M+  YS  GR+E+ + +F  +P K+ +SW ++I G  +N    + L++F  +     
Sbjct: 385 WNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQ 444

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             +K + +SV+ ACA+I+SL+ G  V  ++  +G+  D  + T+L D Y KCG       
Sbjct: 445 TPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQ 504

Query: 419 --------------------------YDALALFNEM-RNTGVKPTIITFTAILSACDHCG 451
                                      ++L LF EM R + V P  +   ++L AC HCG
Sbjct: 505 VFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCG 564

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV +G  +F++M+  Y I P+ +HY+C+VDL +R+G L EA   I  +PF+ +   W+++
Sbjct: 565 LVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAAL 624

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L GC  + D+ +  + A+++ +L   N+  Y+ LS+I+A++G W   S IR +MREK + 
Sbjct: 625 LSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLK 684

Query: 572 KLPGCSWAD 580
           K  GCSW +
Sbjct: 685 KSGGCSWVE 693



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 146/363 (40%), Gaps = 77/363 (21%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   A  L +  +  ++  G  +H H  K GI +  + I + L+ +Y +CG P D  L+F
Sbjct: 316 ISCFACTLSALASLRALSAGINIHGHVTKIGI-DKDVFIGSSLIDLYCKCGKPDDGRLVF 374

Query: 65  D-------------------------------EMPRRNCFSWNAMIEGFMKLGHKEKSLQ 93
           D                                +P +N  SW  +I G+++    EK L+
Sbjct: 375 DLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLE 434

Query: 94  LFNVM------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 147
           +FN +      P K+ FS  +     A A +A+L+ G  +H  I+  G+ +D  +G++L 
Sbjct: 435 VFNTLLVSGQTPNKSTFSSVLC----ACASIASLDKGMNVHGKIIKLGIQYDIFVGTALT 490

Query: 148 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
           ++Y KCGD  S+ QV   M E ++   + +I G A  G                      
Sbjct: 491 DMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFA-------------------- 530

Query: 208 MISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
                       E+L+LF +M R   V  +   L SVL ACS  G ++ G        KV
Sbjct: 531 -----------VESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKV 579

Query: 267 -GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
            G+       + ++D  S+ G   +A +    +        N    + S C + +D K  
Sbjct: 580 YGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEA--NAWAALLSGCKKYKDEKIA 637

Query: 326 FRT 328
            RT
Sbjct: 638 ERT 640



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 128/300 (42%), Gaps = 42/300 (14%)

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           A T  S+L   S+ G +  G  +H H  K G      +A  LL  Y      ++  ++  
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL------------ 344
           E    D ++ N MI+ Y   G +  A+ +F  MP ++ +SW+++I GL            
Sbjct: 81  EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWY 140

Query: 345 -------------------SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
                               +NG   EAL LF  + +  +R +  +  SV+ AC  +   
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAI 443
            LG  +   V   G +    +S SL+    + G   LA  +F+ M     K  ++++TAI
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME----KRDVVSWTAI 256

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L A    G ++E ++ FD M  +  I      +S M+  ++++G   EA+ L  +M  E 
Sbjct: 257 LDAYVETGDLREARRIFDEMPERNEIS-----WSAMIARYSQSGYAEEALKLFSKMVQEG 311



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 10/211 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +  S+  G  +H   +K GI    + +   L  MY +CG+   +  +F+ M
Sbjct: 451 FSSVLCACASIASLDKGMNVHGKIIKLGI-QYDIFVGTALTDMYAKCGDIGSSKQVFERM 509

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISG-FAKADLAALEYG 124
           P +N  SW  MI+G  + G   +SL LF  M + ++ + N  ML+S  FA +    ++ G
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKG 569

Query: 125 K-QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYA 182
               +S   V G+       + +V+L  + G    A + +  +  +P+    +AL+SG  
Sbjct: 570 LWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG-- 627

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
            C K  D  ++ +RT      +  +  +GY+
Sbjct: 628 -CKKYKD-EKIAERTAKKLWQLAENNSAGYV 656


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/625 (31%), Positives = 299/625 (47%), Gaps = 99/625 (15%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           HV   LH   L+         + N LL  Y + G    A  +FD MP  N F++NA++  
Sbjct: 22  HVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLST 81

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF---------------------------- 113
                       LF  M Q++  S+N +I+GF                            
Sbjct: 82  LAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRI 141

Query: 114 -------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
                  A + L     GKQ H  IL  G   ++ +GS LV++Y K      A +  + +
Sbjct: 142 TMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEV 201

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
              +    + +I+G   C  + +ARR+F+  TD  S+ W +M++G+  N  ++EAL +F 
Sbjct: 202 DSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFR 261

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
           +MR  G+  D  T  S+L+AC +L  LE GKQ+H +  +    D+V V SAL+D YSK  
Sbjct: 262 RMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSK-- 319

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
                                        C  I+ A+ +FR M  K++ISW ++IVG  Q
Sbjct: 320 -----------------------------CRSIKLAETVFRRMTCKNIISWTALIVGYGQ 350

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           NG   EA+ +F  M +  +  D ++L SVIS+CAN++SLE G Q      + GL     +
Sbjct: 351 NGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITV 410

Query: 407 STSLVDFYCKCG--YDALALFNEMR-------------------------------NTGV 433
           S +LV  Y KCG   DA  LF+EM                                  GV
Sbjct: 411 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGV 470

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           KP  +TF  +LSAC   G V++G+ +F +M+  + I P  +HY+CM+DL++R+G L EA 
Sbjct: 471 KPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAE 530

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             I+QMP   D   W ++L  C   GD  +G+  AE ++E+DP+N  +Y+ L S+ A  G
Sbjct: 531 EFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKG 590

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSW 578
           +W + + +R  MR++ V K PGCSW
Sbjct: 591 QWNEVAQLRRGMRDRQVKKEPGCSW 615



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY L  ++ SC    S+  G Q H   L  G+++  + ++N L+ +Y +CG+  DA  LF
Sbjct: 373 DYTLGSVISSCANLASLEEGAQFHCLALVSGLMH-YITVSNALVTLYGKCGSIEDAHRLF 431

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAA 120
           DEM   +  SW A++ G+ + G  ++++ LF  M  K    +  ++  ++S  ++A    
Sbjct: 432 DEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGF-- 489

Query: 121 LEYGKQ-IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
           +E G+   HS    +G+       + +++LY + G    A + +  M   PD      L+
Sbjct: 490 VEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLL 549

Query: 179 SG 180
           S 
Sbjct: 550 SA 551


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 213/651 (32%), Positives = 333/651 (51%), Gaps = 72/651 (11%)

Query: 1   MDTRIDYLARLLQ-SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           + T ++    LLQ S N  +     + +H   +K G++ S   + N L+ +Y + G    
Sbjct: 9   LSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVY-LMNNLMNVYSKTGYALH 67

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---- 115
           A  LFDEMP R  FSWN ++  + K G  + + + F+ +PQ++  SW  +I G+      
Sbjct: 68  ARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQY 127

Query: 116 --------------------------ADLAA---LEYGKQIHSHILVNGLDFDSVLGSSL 146
                                     A +AA   +E GK++HS I+  GL  +  + +SL
Sbjct: 128 HKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSL 187

Query: 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
           +N+Y KCGD   A  V + M   D    +A+I+ +   G+M+ A   F++  +   V WN
Sbjct: 188 LNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWN 247

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACK 265
           SMISG+     D  AL +F KM R+ +L  D  TLASVLSAC++L  L  GKQ+H H   
Sbjct: 248 SMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVT 307

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL--LNTMITVYSSCGRIEDAK 323
            G     IV +AL+  YS+ G    A +L  +    D  +     ++  Y   G +  AK
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAK 367

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
           +IF ++ ++ +++W +MIVG  Q+GS  EA++LF +M     R + ++LA+++S  ++++
Sbjct: 368 NIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLA 427

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------- 418
           SL  G+Q+       G      +S +L+  Y K G                         
Sbjct: 428 SLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMI 487

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                     +AL LF  M   G++P  IT+  + SAC H GLV +G+++FD MK    I
Sbjct: 488 IALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKI 547

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P + HY+CMVDLF RAG L EA   IE+MP E DV  W S+L  C  H +  LG+  AE
Sbjct: 548 IPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAE 607

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           R++ L+PEN+ AY  L+++++  G+WE+++ IR  M++  V K  G SW +
Sbjct: 608 RLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/649 (30%), Positives = 325/649 (50%), Gaps = 113/649 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C        GKQLH   LK+G  + T  + N L+ +Y R GN + A  +F  M +R
Sbjct: 257 VLSACTKVEFFEFGKQLHGLVLKQGFSSETY-VCNALVTLYSRSGNLSSAEQIFHCMSQR 315

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKND-FSWNMLISGFAKADLAALEYGKQ 126
           +  S+N++I G  + G+  ++L LF  M    QK D  +   L+S  A A + AL  GKQ
Sbjct: 316 DRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLS--ACASVGALPNGKQ 373

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN----------------QVLNMMK--- 167
            HS+ +  G+  D V+  SL++LY KC D  +A+                Q+   M+   
Sbjct: 374 FHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEG 433

Query: 168 -EPDDFCL-----------------------------------SALISGYANCGKMNDAR 191
             P+ F                                     S LI  YA  GK++ A 
Sbjct: 434 IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHAL 493

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
           ++F R  +   V W +MI+GY  +++ TEAL LF +M+  G+  D    AS +SAC+ + 
Sbjct: 494 KIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQ 553

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
            L+ G+Q+H  +C  G  DD+ + +AL                               ++
Sbjct: 554 ALDQGRQIHAQSCLSGYSDDLSIGNAL-------------------------------VS 582

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
           +Y+ CG++ +A   F  +  K  +SWNS++ G +Q+G   EAL++F  MNK  L ++ F+
Sbjct: 583 LYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFT 642

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------- 418
             S +SA ANI+++ +G+Q+   +   G DS+  +S +L+  Y KCG             
Sbjct: 643 FGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDISWNSMITG 702

Query: 419 -------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                  ++AL LF +M+   V P  +TF  +LSAC H GLV EG  +F +M   +++ P
Sbjct: 703 YSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVP 762

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           + EHY+C+VDL  R+G L+ A   +E+MP + D  +W ++L  C  H +  +G   A  +
Sbjct: 763 KPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHL 822

Query: 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +EL+P+++  Y+ +S+++A SG+W+     R +M+++ V K PG SW +
Sbjct: 823 LELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVE 871



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 162/624 (25%), Positives = 270/624 (43%), Gaps = 150/624 (24%)

Query: 1   MDTRIDYLARLLQSCNTHH-SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
            D RI   A +L+ C+ +  S    +Q+H   +  G  +ST  I N L+ +Y + G  + 
Sbjct: 161 FDERI--FAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTF-ICNPLIDLYFKNGFLSS 217

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA 119
           A  +F+ +  R+  SW AMI G  + G++E+++ LF            +++S   K +  
Sbjct: 218 AKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLF----------CQIVLSACTKVEF- 266

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
             E+GKQ+H  +L  G   ++ + ++LV LY + G+ +SA Q+ + M + D    ++LIS
Sbjct: 267 -FEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLIS 325

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           G A  G +N                                AL LF KM  +    D  T
Sbjct: 326 GLAQQGYIN-------------------------------RALALFKKMNLDCQKPDCVT 354

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA-----C-- 292
           +AS+LSAC+S+G L +GKQ H +A K G+  D++V  +LLD Y K      A     C  
Sbjct: 355 VASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYG 414

Query: 293 ---------KLFSELKV---------YDTILL---------------------------- 306
                    ++F+++++         Y +IL                             
Sbjct: 415 QLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVY 474

Query: 307 --NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             + +I +Y+  G+++ A  IFR +    ++SW +MI G +Q+    EAL+LF  M    
Sbjct: 475 VSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQG 534

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           ++ D    AS ISACA I +L+ G Q+ A+  + G   D  I  +LV  Y +CG      
Sbjct: 535 IKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAY 594

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +AL +F +M   G++    TF + +SA  +  
Sbjct: 595 AAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIA 654

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V+ G K    M  +   D E E  + ++ L+A+ G +++                W+S+
Sbjct: 655 NVRIG-KQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDI--------------SWNSM 699

Query: 512 LRGCVAHGDKGLGRKVAERMIELD 535
           + G   HG      K+ E M +LD
Sbjct: 700 ITGYSQHGCGFEALKLFEDMKQLD 723



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 134/525 (25%), Positives = 230/525 (43%), Gaps = 105/525 (20%)

Query: 18  HHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWN 76
            H +    Q  L +L +G LNS +     +L+  Y+  G+   A+ +FDEMP R+   WN
Sbjct: 74  QHGVRANSQTFL-WLLEGCLNSRSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWN 132

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKN-DFS---WNMLISGFAKADLAALEYGKQIHSHIL 132
            +   F+      +   LF  M  KN +F    + +++ G    +  +  + +QIH+  +
Sbjct: 133 RIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRG-CSGNAVSFRFVEQIHAKTI 191

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
            +G +  + + + L++LY K G  +SA                               ++
Sbjct: 192 TSGFESSTFICNPLIDLYFKNGFLSSA-------------------------------KK 220

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           VF+      SV W +MISG   N  + EA+LLF ++              VLSAC+ + F
Sbjct: 221 VFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEF 266

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
            E GKQ+HG   K G   +  V +AL+  YS+ G                          
Sbjct: 267 FEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSG-------------------------- 300

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
                 +  A+ IF  M  +  +S+NS+I GL+Q G    AL LF  MN    + D  ++
Sbjct: 301 -----NLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTV 355

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
           AS++SACA++ +L  G+Q  +     G+ SD ++  SL+D Y KC               
Sbjct: 356 ASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQ 415

Query: 419 ----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEI 473
                 +  +F +M+  G+ P   T+ +IL  C   G    G++     +K  +  +  +
Sbjct: 416 LDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYV 475

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
              S ++D++A+ G L+ A+ +  ++  E DV  W++++ G   H
Sbjct: 476 S--SVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAGYTQH 517


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 204/646 (31%), Positives = 327/646 (50%), Gaps = 71/646 (10%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T  ++ A +LQ+         G+ +H   +KKG L+  + + N L+  Y + G+   A  
Sbjct: 8   TSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKG-LHLGVYLMNNLMTFYAKTGSLRFAHH 66

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG---------- 112
           +FDEMP ++ FSWN +I G+ K G+ E S +L   MP  +  SW  +I G          
Sbjct: 67  VFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNA 126

Query: 113 ---FAK--------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 149
              FAK                    A    L+ G++IHS ++  GL     + +SL+N+
Sbjct: 127 IWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNM 186

Query: 150 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
           Y KCGD   A  V + M   +    +ALIS Y   G+   A   F++  D   V WNSMI
Sbjct: 187 YAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMI 246

Query: 210 SGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           SGY     + EAL++F KM     L+ D  TLAS+LSAC++L  L  GKQ+H +  +   
Sbjct: 247 SGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAET 306

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIF 326
                V +AL+  Y+K G    A  +    +    + I   +++  Y+  G ++ A+ IF
Sbjct: 307 ETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIF 366

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             + ++ +++W +MIVG  QNG   +AL+LF  M       + ++LA+++S  ++++ LE
Sbjct: 367 NKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILE 426

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------------- 418
            G+Q+ A     G  S   ++ +L+  Y K G                            
Sbjct: 427 HGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMAL 486

Query: 419 ------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                  +A+ LF  M + G+KP  IT+  +LSAC H GLV++G+K+++ M   + I+P 
Sbjct: 487 AQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPT 546

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           + HY+CM+DL+ RAG L EA   IE MP E D   W S+L  C  H +  L +  AER++
Sbjct: 547 LSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLL 606

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            +DP N+ AY+ L+++++  G+WE ++  R +M+++ V K  G SW
Sbjct: 607 LIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISW 652



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 204/402 (50%), Gaps = 9/402 (2%)

Query: 99  PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
           P  ++F  ++L +     D  A   G+ +H  I+  GL     L ++L+  Y K G    
Sbjct: 7   PTSSEFFAHILQTSVRIKDPFA---GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRF 63

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           A+ V + M     F  + LISGYA  G    +RR+     D   V W ++I GY      
Sbjct: 64  AHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLF 123

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
             A+ +F KM    V     T+++VLS+C++   L+ G+++H    K+G+   V VA++L
Sbjct: 124 DNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSL 183

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L+ Y+K G P  A  +F  + V +    N +I++Y   G+ E A   F  MP++ ++SWN
Sbjct: 184 LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWN 243

Query: 339 SMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           SMI G SQ G  +EAL +F  M N+  L+ D F+LAS++SACAN+  L +G+Q+ A +  
Sbjct: 244 SMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILR 303

Query: 398 IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
              ++   +  +L+  Y K G   +A      N      II FT++L      G VK  +
Sbjct: 304 AETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAR 363

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           + F+ ++     D ++  ++ M+  + + G  N+A+ L   M
Sbjct: 364 EIFNKLR-----DRDVVAWTAMIVGYVQNGLWNDALELFRLM 400


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 185/616 (30%), Positives = 320/616 (51%), Gaps = 77/616 (12%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI +L+ +L++CN +  +  G+++H   +K   + + + +A  L+ MY +CG  + A  +
Sbjct: 157 RITFLS-ILKACNNYSILEKGRKIHT-IVKAMGMETDVAVATALITMYSKCGEISVACEV 214

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLA 119
           F +M  RN  SW A+I+   +     ++ +L+  M Q     N  ++  L++     +  
Sbjct: 215 FHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPE-- 272

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL  G++IHSHI   GL+ D ++ ++L+ +Y K                           
Sbjct: 273 ALNRGRRIHSHISERGLETDMIVANALITMYCK--------------------------- 305

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI-SNNEDTEAL----LLFHKMRRNGVL 234
               C  + +AR +FDR +    + W++MI+GY  S  +D E++     L  +MRR GV 
Sbjct: 306 ----CNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVF 361

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  T  S+L AC++ G LE G+Q+H    KVG   D  + +A+ + Y+K G   +A ++
Sbjct: 362 PNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQV 421

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           FS++   + +   + +++Y  CG +  A+ +F  MP ++++SWN MI G +QNG  ++  
Sbjct: 422 FSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVF 481

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +L  +M     + D+ ++ +++ AC  ++ LE G+ V A    +GL+SD +++TSL+  Y
Sbjct: 482 ELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMY 541

Query: 415 CKCGY---------------------------------DALALFNEMRNTGVKPTIITFT 441
            KCG                                  +A+ LF  M    V P  IT T
Sbjct: 542 SKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLT 601

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           A++SAC   GLV+EG++ F  M+  + + P  +HY CMVDL  RAG L EA   I+ MP 
Sbjct: 602 AVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPC 661

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           E D+ +W ++L  C +H +  L  + A  ++EL+P  A  YI LS+I+A +G W+ S+ +
Sbjct: 662 EPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKV 721

Query: 562 RDIMREKHVGKLPGCS 577
           R +M ++ + K  G S
Sbjct: 722 RRVMDDRGLKKDRGES 737



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 123/514 (23%), Positives = 218/514 (42%), Gaps = 113/514 (21%)

Query: 84  KLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
           K G   +++QL  ++ Q+    N  ++  +I   AKA     E GK +H  +   G++ D
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKAR--RFEDGKMVHKQLDELGVEID 90

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
             LG+SL+N Y K  D  SA QV                               F R T 
Sbjct: 91  IYLGNSLINFYSKFEDVASAEQV-------------------------------FRRMTL 119

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
              V W+SMI+ Y  NN   +A   F +M    +  +  T  S+L AC++   LE G+++
Sbjct: 120 RDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKI 179

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H     +G+  DV VA+AL+  YSK                               CG I
Sbjct: 180 HTIVKAMGMETDVAVATALITMYSK-------------------------------CGEI 208

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
             A  +F  M  ++++SW ++I   +Q+    EA +L+  M +  +  +  +  S++++C
Sbjct: 209 SVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------------------- 417
               +L  G ++ + ++  GL++D I++ +L+  YCKC                      
Sbjct: 269 NTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWS 328

Query: 418 ----GY------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
               GY            +   L   MR  GV P  +TF +IL AC   G +++G++   
Sbjct: 329 AMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHA 388

Query: 462 AM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
            + K  + +D  ++  + + +++A+ G + EA  +  +M    +V  W+S L   +  GD
Sbjct: 389 ELSKVGFELDRSLQ--TAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKCGD 445

Query: 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
                KV     E+   N  ++  + + +A +G+
Sbjct: 446 LSSAEKV---FSEMPTRNVVSWNLMIAGYAQNGD 476



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/424 (21%), Positives = 174/424 (41%), Gaps = 122/424 (28%)

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           G+A+ GK  D       T+ +   +W    +G +      EA+ L   +++ G+L +++T
Sbjct: 9   GFASTGKELDGP-----TSVSGGEVWRLCKAGRLR-----EAIQLLGIIKQRGLLVNSNT 58

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
              V+  C+     E GK VH    ++GV  D+ + ++L++ YSK    + A ++F  + 
Sbjct: 59  YGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMT 118

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + D                               +++W+SMI   + N  P +A D F  
Sbjct: 119 LRD-------------------------------VVTWSSMIAAYAGNNHPAKAFDTFER 147

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M   ++  ++ +  S++ AC N S LE G ++   V  +G+++D  ++T+L+  Y KCG 
Sbjct: 148 MTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGE 207

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A  L+ +M   G+ P  +TF ++L++
Sbjct: 208 ISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNS 267

Query: 447 CD-----------------------------------HCGLVKEGQKWFDAMKWQYHIDP 471
           C+                                    C  V+E ++ FD M  +     
Sbjct: 268 CNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKR----- 322

Query: 472 EIEHYSCMVDLFARAG-----CLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHGDKGL 523
           ++  +S M+  +A++G      ++E   L+E+M  E    +   + SILR C AHG    
Sbjct: 323 DVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQ 382

Query: 524 GRKV 527
           GR++
Sbjct: 383 GRQI 386


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 196/609 (32%), Positives = 319/609 (52%), Gaps = 67/609 (11%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S L ++N ++  Y++ GN   A LLFDEMP RN  SW+A+I G MK G  E+S+  F   
Sbjct: 85  SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERN 144

Query: 99  PQKNDFSWNMLISGFAKADL--AALE-YGKQIHSHILVNGLDFDSVL------------- 142
           P +N  SW   ISGF +  L   AL+ + + + S +  N + F SV+             
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 143 -----------------GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
                             +SL+ L  + G+ + A +V + M++ D    +A++  Y   G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            + +ARR+FD   + + + W++MI+ Y  +    EAL LF KM + G   + S  A  LS
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLS 324

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A +SL  L  G  +HGH  K+G+  DV + S+L+D Y K G P D   +F  +   + + 
Sbjct: 325 ALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVC 384

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N+M+  YS  GR+E+ + +F  +P K+ +SW ++I G  +N    + L++F  +     
Sbjct: 385 WNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQ 444

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             +K + +SV+ ACA+I+SL+ G  V  ++  +G+  D  + T+L D Y KCG       
Sbjct: 445 TPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQ 504

Query: 419 --------------------------YDALALFNEM-RNTGVKPTIITFTAILSACDHCG 451
                                      ++L LF EM R + V P  +   ++L AC HCG
Sbjct: 505 VFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCG 564

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV +G  +F++M+  Y I P+ +HY+C+VDL +R+G L EA   I  +PF+ +   W+++
Sbjct: 565 LVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAAL 624

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L GC  + D+ +  + A+++ +L   N+  Y+ LS+I+A++G W   S IR +MREK + 
Sbjct: 625 LSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLK 684

Query: 572 KLPGCSWAD 580
           K  GCSW +
Sbjct: 685 KSGGCSWVE 693



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 143/349 (40%), Gaps = 77/349 (22%)

Query: 19  HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD------------- 65
            ++  G  +H H  K GI +  + I + L+ +Y +CG P D  L+FD             
Sbjct: 330 RALSAGINIHGHVTKIGI-DKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSM 388

Query: 66  ------------------EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK 101
                              +P +N  SW  +I G+++    EK L++FN +      P K
Sbjct: 389 VGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNK 448

Query: 102 NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
           + FS  +     A A +A+L+ G  +H  I+  G+ +D  +G++L ++Y KCGD  S+ Q
Sbjct: 449 STFSSVLC----ACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQ 504

Query: 162 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221
           V   M E ++   + +I G A                           SG+       E+
Sbjct: 505 VFERMPEKNEISWTVMIQGLAE--------------------------SGFA-----VES 533

Query: 222 LLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALL 279
           L+LF +M R   V  +   L SVL ACS  G ++ G        KV G+       + ++
Sbjct: 534 LILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVV 593

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
           D  S+ G   +A +    +        N    + S C + +D K   RT
Sbjct: 594 DLLSRSGRLYEAEEFIRTIPFQPEA--NAWAALLSGCKKYKDEKIAERT 640



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 127/296 (42%), Gaps = 42/296 (14%)

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           A T  S+L   S+ G +  G  +H H  K G      +A  LL  Y      ++  ++  
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL------------ 344
           E    D ++ N MI+ Y   G +  A+ +F  MP ++ +SW+++I GL            
Sbjct: 81  EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWY 140

Query: 345 -------------------SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
                               +NG   EAL LF  + +  +R +  +  SV+ AC  +   
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAI 443
            LG  +   V   G +    +S SL+    + G   LA  +F+ M     K  ++++TAI
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME----KRDVVSWTAI 256

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           L A    G ++E ++ FD M  +  I      +S M+  ++++G   EA+ L  +M
Sbjct: 257 LDAYVETGDLREARRIFDEMPERNEIS-----WSAMIARYSQSGYAEEALKLFSKM 307



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 10/211 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +  S+  G  +H   +K GI      +   L  MY +CG+   +  +F+ M
Sbjct: 451 FSSVLCACASIASLDKGMNVHGKIIKLGIQYDIF-VGTALTDMYAKCGDIGSSKQVFERM 509

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISG-FAKADLAALEYG 124
           P +N  SW  MI+G  + G   +SL LF  M + ++ + N  ML+S  FA +    ++ G
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKG 569

Query: 125 K-QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYA 182
               +S   V G+       + +V+L  + G    A + +  +  +P+    +AL+SG  
Sbjct: 570 LWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG-- 627

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
            C K  D  ++ +RT      +  +  +GY+
Sbjct: 628 -CKKYKD-EKIAERTAKKLWQLAENNSAGYV 656


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 204/646 (31%), Positives = 326/646 (50%), Gaps = 71/646 (10%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T  ++ A +LQ+         G+ +H   +KKG L+  + + N L+  Y + G+   A  
Sbjct: 8   TSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKG-LHLGVYLMNNLMTFYAKTGSLRFAHH 66

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG---------- 112
           +FDEMP ++ FSWN +I G+ K G+ E S +L   MP  +  SW  +I G          
Sbjct: 67  VFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNA 126

Query: 113 ---FAK--------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 149
              FAK                    A    L+ G++IHS ++  GL     + +SL+N+
Sbjct: 127 IWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNM 186

Query: 150 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
           Y KCGD   A  V + M   +    +ALIS Y   G+   A   F++  D   V WNSMI
Sbjct: 187 YAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMI 246

Query: 210 SGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           SGY     + EAL +F KM     L+ D  TLAS+LSAC++L  L  GKQ+H +  +   
Sbjct: 247 SGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAET 306

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIF 326
                V +AL+  Y+K G    A  +    +    + I   +++  Y+  G ++ A+ IF
Sbjct: 307 ETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIF 366

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             + ++ +++W +MIVG  QNG   +AL+LF  M       + ++LA+++S  ++++ LE
Sbjct: 367 NKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILE 426

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------------- 418
            G+Q+ A     G  S   ++ +L+  Y K G                            
Sbjct: 427 HGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMAL 486

Query: 419 ------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                  +A+ LF  M + G+KP  IT+  +LSAC H GLV++G+K+++ M   + I+P 
Sbjct: 487 AQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPT 546

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           + HY+CM+DL+ RAG L EA   IE MP E D   W S+L  C  H +  L +  AER++
Sbjct: 547 LSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLL 606

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            +DP N+ AY+ L+++++  G+WE ++  R +M+++ V K  G SW
Sbjct: 607 LIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISW 652



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 204/402 (50%), Gaps = 9/402 (2%)

Query: 99  PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
           P  ++F  ++L +     D  A   G+ +H  I+  GL     L ++L+  Y K G    
Sbjct: 7   PTSSEFFAHILQTSVRIKDPFA---GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRF 63

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           A+ V + M     F  + LISGYA  G    +RR+     D   V W ++I GY      
Sbjct: 64  AHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLF 123

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
             A+ +F KM    V     T+++VLS+C++   L+ G+++H    K+G+   V VA++L
Sbjct: 124 DNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSL 183

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L+ Y+K G P  A  +F  + V +    N +I++Y   G+ E A   F  MP++ ++SWN
Sbjct: 184 LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWN 243

Query: 339 SMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           SMI G SQ G  +EAL +F  M N+  L+ D F+LAS++SACAN+  L +G+Q+ A +  
Sbjct: 244 SMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILR 303

Query: 398 IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
              ++   +  +L+  Y K G   +A      N      II FT++L      G VK  +
Sbjct: 304 AETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAR 363

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           + F+ ++     D ++  ++ M+  + + G  N+A+ L   M
Sbjct: 364 EIFNKLR-----DRDVVAWTAMIVGYVQNGLWNDALELFRLM 400


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 199/653 (30%), Positives = 319/653 (48%), Gaps = 114/653 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L++C+    + +GKQ+H   +  G       +AN L+ MY +C    D+  LFDE+
Sbjct: 160 FSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVF-VANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P RN  SWNA+   +++     +++ LF  M     + N+FS + +++  A   L     
Sbjct: 219 PERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVN--ACTGLRDSSR 276

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG--- 180
           GK IH +++  G D+D    ++LV++Y K GD   A  V   +K+PD    +A+I+G   
Sbjct: 277 GKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVL 336

Query: 181 ----------------------------------------YANCGKMNDARRVFDRTTDT 200
                                                   Y+ C  + DAR  F+   + 
Sbjct: 337 HEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK 396

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             + WN++ISGY    ED EAL LF +M + G+  + +TL+++L + + L  +   +QVH
Sbjct: 397 DLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVH 456

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G + K G   D+ V ++L+D+                               Y  C  +E
Sbjct: 457 GLSVKSGFHSDIYVVNSLIDS-------------------------------YGKCSHVE 485

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
           DA+ IF       L+S+ SMI   +Q G   EAL LF  M  ++L+ D+F  +S+++ACA
Sbjct: 486 DAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACA 545

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
           N+S+ E G+Q+   +   G   D     SLV+ Y KCG                      
Sbjct: 546 NLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSA 605

Query: 419 -----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                        AL LFN+M   GV P  IT  ++L AC+H GLV E + +F++M+  +
Sbjct: 606 MIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELF 665

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
              P  EHY+CM+DL  RAG +NEAV L+ +MPFEA+  +W ++L     H D  LGR+ 
Sbjct: 666 GFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRA 725

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           AE +  L+PE +  ++ L++I+A++G+WE  + +R +MR+  V K PG SW +
Sbjct: 726 AEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIE 778



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 153/598 (25%), Positives = 276/598 (46%), Gaps = 119/598 (19%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + Y ++LL  C T  S+  G Q+H H  K G L+    I N L+ +Y +C     A  
Sbjct: 55  TSVSY-SKLLSQCCTTKSLRPGLQIHAHITKSG-LSDDPSIRNHLINLYSKCRXFGYARK 112

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADL 118
           L DE    +  SW+A+I G+ + G    +L  F+ M     + N+F+++ ++   A + +
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLK--ACSIV 170

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  GKQ+H  ++V+G + D  + ++LV +Y KC +F                      
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF---------------------- 208

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                     D++R+FD   + + V WN++ S Y+  +   EA+ LF++M  +G+  +  
Sbjct: 209 ---------LDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEF 259

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           +L+S+++AC+ L     GK +HG+  K+G   D   A+AL+D Y+K G  +DA  +F ++
Sbjct: 260 SLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKI 319

Query: 299 KVYDTILLNTMIT-------------------------------------------VYSS 315
           K  D +  N +I                                            +YS 
Sbjct: 320 KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSK 379

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
           C  +EDA+  F  +P K LI+WN++I G SQ    +EAL LF  M+K  +  ++ +L+++
Sbjct: 380 CDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTI 439

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------------ 417
           + + A +  + +  QV       G  SD  +  SL+D Y KC                  
Sbjct: 440 LKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDL 499

Query: 418 ---------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW-FD 461
                          G +AL LF EM++  +KP     +++L+AC +    ++G++    
Sbjct: 500 VSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVH 559

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            +K+ + +D  I   + +V+++A+ G +++A     ++  E  +  WS+++ G   HG
Sbjct: 560 ILKYGFVLD--IFAGNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQHG 614



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 150/347 (43%), Gaps = 88/347 (25%)

Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
           +ED +   + + + +      + + + +LS C +   L  G Q+H H  K G+ DD    
Sbjct: 35  SEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDD---- 90

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
                       PS               + N +I +YS C     A+ +        L+
Sbjct: 91  ------------PS---------------IRNHLINLYSKCRXFGYARKLVDESSEPDLV 123

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           SW+++I G +QNG    AL  F  M+ L ++ ++F+ +SV+ AC+ +  L +G+QV   V
Sbjct: 124 SWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVV 183

Query: 396 TIIGLDSDQIISTSLVDFYCKCGY---------------------------------DAL 422
            + G + D  ++ +LV  Y KC                                   +A+
Sbjct: 184 VVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAV 243

Query: 423 ALFNEMRNTGVKPTIITFTAILSACD-----------HCGLVKEGQKWFDAMKWQYHIDP 471
            LF EM  +G+KP   + +++++AC            H  L+K G  W          DP
Sbjct: 244 GLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW----------DP 293

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
                + +VD++A+ G L +A+++ E++  + D+  W++++ GCV H
Sbjct: 294 --FSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLH 337


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 199/594 (33%), Positives = 304/594 (51%), Gaps = 44/594 (7%)

Query: 27  LHLH-FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           L LH F +K        +   +L MY++CG    A  +F   P  + F WN+MI G+ K 
Sbjct: 134 LQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKY 193

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLIS-----GFAKADLAA-LEYGKQIHSHILVNGLDFD 139
           G  +K+L+LF  MP+++  SWN +IS     GF    L   LE   Q       N + + 
Sbjct: 194 GSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQ---GFRPNSMTYA 250

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
           SVL S+  ++Y      +   +++ M    D +    LI  YA CG++  AR+VFD  T+
Sbjct: 251 SVL-SACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTE 309

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            ++V W S+I G        EAL+LF++MR   V  D  TLA+VL  C S   +  G+Q+
Sbjct: 310 HNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQL 369

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H H    G+   V VA+AL+  Y+K G    A   F  + + D I    MIT +S  G +
Sbjct: 370 HAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDV 429

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           E A+  F  MP +++ISWNSM+    Q G   E L ++  M +  ++ D  + ++ ISAC
Sbjct: 430 EKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISAC 489

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------------------- 419
           A+++ L LG Q+ A+   +G  S+  ++ S+V  Y +CG                     
Sbjct: 490 ADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWN 549

Query: 420 -------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                          + +F +M N G  P  I++ ++LS C H G V EGQ +F +M   
Sbjct: 550 AMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKD 609

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           + I P  EH+ CMVDL  RAG L +A NLI QMPF+ +  +W ++L  C  HG+  L   
Sbjct: 610 HGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAEL 669

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             + ++ELD E   +Y  L++I++ SG+ +  + +R +MR+K V K PGCSW +
Sbjct: 670 AVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIE 723



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 148/512 (28%), Positives = 246/512 (48%), Gaps = 58/512 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           ++ C +  SI + ++LH   +  G L S++ + N LL MY  CG  +DA  +F  +   N
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMG-LKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPN 69

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-----------AKADLAA 120
            +SWN MI GF   G   ++ +LF  MP+++  SWN ++SG+           A   L  
Sbjct: 70  VYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGY 129

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L+   Q+H          D+ + +S++++Y KCG  + A +V      P  FC +++I G
Sbjct: 130 LKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYG 189

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+  G +  A  +F +  +  +V WN+MIS    +    E L  F +M   G   ++ T 
Sbjct: 190 YSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTY 249

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           ASVLSAC+S+  LE G  +H    ++    DV     L+D Y+K                
Sbjct: 250 ASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAK---------------- 293

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CGR+E A+ +F  +   + +SW S+I G++Q G   EAL LF  M
Sbjct: 294 ---------------CGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQM 338

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            ++ +  D+F+LA+V+  C +   + +GEQ+ A     GLDS   ++ +LV  Y KCG  
Sbjct: 339 REVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDV 398

Query: 419 YDALALFNEMRNTGVKPT--IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
           + A   F  M      P   II++TA+++A    G V++ +++FD M      +  +  +
Sbjct: 399 WKANHAFELM------PIRDIISWTAMITAFSQAGDVEKAREYFDKMP-----ERNVISW 447

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           + M+  + + G   E + +  QM  E     W
Sbjct: 448 NSMLATYMQRGYWEEGLKVYIQMLREGVKTDW 479



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 213/475 (44%), Gaps = 60/475 (12%)

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           A L ++   +++H+ ++  GL     L + L+N+Y  CG  + A +V   +  P+ +  +
Sbjct: 15  ASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWN 74

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
            +ISG+A+ G+M +A ++F++  +  SV WNSM+SGY  N E                  
Sbjct: 75  TMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGE------------------ 116

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
               L + + A  SLG+L+   Q+HG A K     D  V +++LD Y K G    A K+F
Sbjct: 117 ----LEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVF 172

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                      N+MI  YS  G ++ A  +F  MP +  +SWN+MI  LSQ+G   E L+
Sbjct: 173 CRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLN 232

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
            F  M     R +  + ASV+SAC +I  LE G  + AR+  +    D      L+D Y 
Sbjct: 233 TFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYA 292

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +AL LFN+MR   V     T   
Sbjct: 293 KCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLAT 352

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L  C     +  G++   A      +D  +   + +V ++A+ G + +A +  E MP  
Sbjct: 353 VLGVCLSQKDISIGEQ-LHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIR 411

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
            D+  W++++      GD    R+  ++M E    N  ++  + + +   G WE+
Sbjct: 412 -DIISWTAMITAFSQAGDVEKAREYFDKMPE---RNVISWNSMLATYMQRGYWEE 462



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 140/254 (55%), Gaps = 7/254 (2%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C +   I +G+QLH H + +G L+S++P+AN L+ MY +CG+   A   F+ M
Sbjct: 350 LATVLGVCLSQKDISIGEQLHAHTITRG-LDSSVPVANALVTMYAKCGDVWKANHAFELM 408

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
           P R+  SW AMI  F + G  EK+ + F+ MP++N  SWN +++ + +      E G ++
Sbjct: 409 PIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQR--GYWEEGLKV 466

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYAN 183
           +  +L  G+  D +  S+ ++           NQ+L   ++     +    +++++ Y+ 
Sbjct: 467 YIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSR 526

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG++ +A+++F      + V WN+M++GY  N +  + + +F KM   G + D  +  SV
Sbjct: 527 CGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSV 586

Query: 244 LSACSSLGFLEHGK 257
           LS CS  GF+  G+
Sbjct: 587 LSGCSHSGFVSEGQ 600



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 148/338 (43%), Gaps = 33/338 (9%)

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           +E +      +  C+SL  +   +++H     +G+   + + + LL+ YS  G+ SDA +
Sbjct: 1   MEMSQKFYESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYR 60

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +F  +   +    NTMI+ ++  G++ +A+ +F  MP +  +SWNSM+ G   NG     
Sbjct: 61  VFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNG----- 115

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
                             L + I A  ++  L+L  Q+           D  + TS++D 
Sbjct: 116 -----------------ELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDM 158

Query: 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
           Y KCG  A+    ++      P++  + +++      G VK+  + F  M      + + 
Sbjct: 159 YIKCG--AMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMP-----ERDT 211

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKVAER 530
             ++ M+ + ++ G   E +N   +M    F  +   ++S+L  C +  D   G  +  R
Sbjct: 212 VSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHAR 271

Query: 531 MIELDP-ENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           ++ ++P  +  A   L  ++A  G  E +  + D + E
Sbjct: 272 IVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTE 309


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 195/609 (32%), Positives = 318/609 (52%), Gaps = 67/609 (11%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S L ++N ++  Y++ GN   A LLFDEMP RN  SW+A+I G MK G  E+S+  F   
Sbjct: 85  SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERN 144

Query: 99  PQKNDFSWNMLISGFAKADL--AALE-YGKQIHSHILVNGLDFDSVL------------- 142
           P +N  SW   ISGF +  L   AL+ + + + S +  N + F SV+             
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 143 -----------------GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
                             +SL+ L  + G+ + A +V + M++ D    +A++  Y   G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            + +ARR+FD   + + + W++MI+ Y  +    EAL LF KM + G   + S  A  LS
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLS 324

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A +SL  L  G  +HGH  K+G+  DV + S+L+D Y K G P D   +F  +   + + 
Sbjct: 325 ALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVC 384

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N+M+  YS  GR+E+ + +F  +P K+  SW ++J G  +N    + L++F  +     
Sbjct: 385 WNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQ 444

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             +K + +SV+ ACA+I+SL+ G  V  ++  +G+  D  + T+L D Y KCG       
Sbjct: 445 TPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQ 504

Query: 419 --------------------------YDALALFNEM-RNTGVKPTIITFTAILSACDHCG 451
                                      ++L LF EM R + V P  +   ++L AC HCG
Sbjct: 505 VFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCG 564

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV +G  +F++M+  Y I P+ +HY+C+VDL +R+G L EA   I  +PF+ +   W+++
Sbjct: 565 LVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAAL 624

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L GC  + D+ +  + A+++ +L   N+  Y+ LS+I+A++G W   S IR +MREK + 
Sbjct: 625 LSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLK 684

Query: 572 KLPGCSWAD 580
           K  GCSW +
Sbjct: 685 KSGGCSWVE 693



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 146/363 (40%), Gaps = 77/363 (21%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   A  L +  +  ++  G  +H H  K GI +  + I + L+ +Y +CG P D  L+F
Sbjct: 316 ISCFACTLSALASLRALSAGINIHGHVTKIGI-DKDVFIGSSLIDLYCKCGKPDDGRLVF 374

Query: 65  D-------------------------------EMPRRNCFSWNAMIEGFMKLGHKEKSLQ 93
           D                                +P +N  SW  +J G+++    EK L+
Sbjct: 375 DLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLE 434

Query: 94  LFNVM------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 147
           +FN +      P K+ FS  +     A A +A+L+ G  +H  I+  G+ +D  +G++L 
Sbjct: 435 VFNTLLVSGQTPNKSTFSSVLC----ACASIASLDKGMNVHGKIIKLGIQYDIFVGTALT 490

Query: 148 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
           ++Y KCGD  S+ QV   M E ++   + +I G A  G                      
Sbjct: 491 DMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFA-------------------- 530

Query: 208 MISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
                       E+L+LF +M R   V  +   L SVL ACS  G ++ G        KV
Sbjct: 531 -----------VESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKV 579

Query: 267 -GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
            G+       + ++D  S+ G   +A +    +        N    + S C + +D K  
Sbjct: 580 YGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEA--NAWAALLSGCKKYKDEKIA 637

Query: 326 FRT 328
            RT
Sbjct: 638 ERT 640



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 128/300 (42%), Gaps = 42/300 (14%)

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           A T  S+L   S+ G +  G  +H H  K G      +A  LL  Y      ++  ++  
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL------------ 344
           E    D ++ N MI+ Y   G +  A+ +F  MP ++ +SW+++I GL            
Sbjct: 81  EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWY 140

Query: 345 -------------------SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
                               +NG   EAL LF  + +  +R +  +  SV+ AC  +   
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAI 443
            LG  +   V   G +    +S SL+    + G   LA  +F+ M     K  ++++TAI
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRME----KRDVVSWTAI 256

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L A    G ++E ++ FD M  +  I      +S M+  ++++G   EA+ L  +M  E 
Sbjct: 257 LDAYVETGDLREARRIFDEMPERNEIS-----WSAMIARYSQSGYAEEALKLFSKMVQEG 311



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 10/211 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +  S+  G  +H   +K GI    + +   L  MY +CG+   +  +F+ M
Sbjct: 451 FSSVLCACASIASLDKGMNVHGKIIKLGI-QYDIFVGTALTDMYAKCGDIGSSKQVFERM 509

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISG-FAKADLAALEYG 124
           P +N  SW  MI+G  + G   +SL LF  M + ++ + N  ML+S  FA +    ++ G
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKG 569

Query: 125 K-QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYA 182
               +S   V G+       + +V+L  + G    A + +  +  +P+    +AL+SG  
Sbjct: 570 LWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG-- 627

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
            C K  D  ++ +RT      +  +  +GY+
Sbjct: 628 -CKKYKD-EKIAERTAKKLWQLAENNSAGYV 656


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 192/612 (31%), Positives = 315/612 (51%), Gaps = 70/612 (11%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           L  ++ + N L+ +Y + G   DA  LF+EMP +  FSWN ++ G+ K G  EK+ Q+F+
Sbjct: 6   LTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFD 65

Query: 97  VMPQKNDFSWNMLISGFAK---------------------------------ADLAALEY 123
           ++P ++  SW  +I G+ +                                 A   +   
Sbjct: 66  LIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGI 125

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK++HS ++  GL     + +SL+N+Y K GD   A  V + MK  +    +A+IS + N
Sbjct: 126 GKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMN 185

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLAS 242
           CG+++ A   F+  ++   V WNSMI+G   +  D EAL  F  + ++  L+ D  +LAS
Sbjct: 186 CGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLAS 245

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-- 300
            LSAC++L  L  GKQ+HG+  +        V +AL+  Y+K G    A ++  +  +  
Sbjct: 246 ALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISD 305

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            D I    ++  Y   G I  A+ IF ++ +  +++W +MIVG  QNG   +A+++F  M
Sbjct: 306 LDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTM 365

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                R + F+LA+++SA ++++SL  G+Q+ A     G      +  +L   Y K G  
Sbjct: 366 VSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSI 425

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+ LF +M   G+KP  IT+  +LSA
Sbjct: 426 NGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSA 485

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GLV++G+ +FD MK  + IDP + HY+CMVDLF RAG L EA   +E MP E DV 
Sbjct: 486 CTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVI 545

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            W S+L  C  + +  L +  AER++ ++P N+ AY  L++++++ G+W+ ++ IR +M+
Sbjct: 546 AWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMK 605

Query: 567 EKHVGKLPGCSW 578
            + V K  G SW
Sbjct: 606 ARGVKKEQGLSW 617



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 229/477 (48%), Gaps = 69/477 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    S  +GK++H   +K G L++ +P+AN LL MY + G+   A ++FD M
Sbjct: 110 LTNVLASCAATGSRGIGKKVHSFVVKLG-LHACVPVANSLLNMYAKTGDLKMAKVVFDRM 168

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             RN  SWNAMI   M  G  + +L  F ++ +++  SWN +I+G               
Sbjct: 169 KLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFS 228

Query: 113 -------------------FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                               A A+L  L +GKQIH +I+    D    +G++L+++Y K 
Sbjct: 229 SILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKS 288

Query: 154 GDFNSANQVLNM--MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           G    A +++    + + D    +AL++GY   G +  AR++F+   D   V W +MI G
Sbjct: 289 GGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVG 348

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           Y+ N  + +A+ +F  M   G   ++ TLA++LSA SS+  L HGKQ+H  A + G    
Sbjct: 349 YVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALS 408

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
             V +AL   Y+K G  + A K+F+ L+                               N
Sbjct: 409 PSVGNALTTMYAKAGSINGARKVFNLLR------------------------------QN 438

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           +  +SW SMI+ L+Q+G   EA++LF  M  L ++ D  +   V+SAC +   +E G   
Sbjct: 439 RDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSY 498

Query: 392 FARV-TIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447
           F  +  +  +D        +VD + + G    A +  + N  ++P +I + ++LS+C
Sbjct: 499 FDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEA-YKFVENMPMEPDVIAWGSLLSSC 554



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 201/371 (54%), Gaps = 8/371 (2%)

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           GL F   L ++L+NLY K G    A+ + N M     F  + ++SGYA  GK+  A +VF
Sbjct: 5   GLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVF 64

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           D      SV W ++I GY       +A+ +F  M ++ VL    TL +VL++C++ G   
Sbjct: 65  DLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRG 124

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            GK+VH    K+G+   V VA++LL+ Y+K G    A  +F  +K+ +T   N MI+++ 
Sbjct: 125 IGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHM 184

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRMDKFSLA 373
           +CGR++ A   F  +  + ++SWNSMI G +Q+G   EAL  F ++ K   L+ D+FSLA
Sbjct: 185 NCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLA 244

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGV 433
           S +SACAN+  L  G+Q+   +     D+   +  +L+  Y K G   +A    +  +G+
Sbjct: 245 SALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIAR-RIIEQSGI 303

Query: 434 KP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
               +I FTA+L+     G +   ++ F+++K     DP++  ++ M+  + + G  N+A
Sbjct: 304 SDLDVIAFTALLNGYVKLGDITPARQIFNSLK-----DPDVVAWTAMIVGYVQNGLNNDA 358

Query: 493 VNLIEQMPFEA 503
           + + + M  E 
Sbjct: 359 IEVFKTMVSEG 369



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 172/351 (49%), Gaps = 33/351 (9%)

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
            K+G+   V + + L++ Y+K G   DA  LF+E+ V  T   NT+++ Y+  G++E A 
Sbjct: 2   VKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAH 61

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
            +F  +P +  +SW ++IVG +Q G   +A+ +F +M K  +   +F+L +V+++CA   
Sbjct: 62  QVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATG 121

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LFNEM--RNTGVKPTIIT 439
           S  +G++V + V  +GL +   ++ SL++ Y K G   +A  +F+ M  RNT       +
Sbjct: 122 SRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTS------S 175

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV----NL 495
           + A++S   +CG V      F+ +      + +I  ++ M+    + G  NEA+    ++
Sbjct: 176 WNAMISLHMNCGRVDLALAQFELLS-----ERDIVSWNSMIAGCNQHGFDNEALQFFSSI 230

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSG 553
           ++    + D    +S L  C        G+++   ++    D   A     L S++A SG
Sbjct: 231 LKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN-ALISMYAKSG 289

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQ 604
             E   + R I+ +  +  L      D IAF    L   +++L +    +Q
Sbjct: 290 GVE---IARRIIEQSGISDL------DVIAFTA--LLNGYVKLGDITPARQ 329


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 196/678 (28%), Positives = 333/678 (49%), Gaps = 141/678 (20%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           RLL SC +  ++  G+++H+  +K  +L   + +AN +L MY +CG+  +A  +FD+M  
Sbjct: 249 RLLSSCKSPSALECGREIHVEAMKARLLFD-VNVANCILNMYAKCGSIHEAREVFDKMET 307

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGK 125
           ++  SW  +I G+   GH E + ++F  M Q+    N  ++  +++ F+    AAL++GK
Sbjct: 308 KSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGP--AALKWGK 365

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +HSHIL  G + D  +G++LV +                               YA CG
Sbjct: 366 TVHSHILNAGHESDLAVGTALVKM-------------------------------YAKCG 394

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
              D R+VF++  +   + WN+MI G        EA  ++H+M+R G++ +  T   +L+
Sbjct: 395 SYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLN 454

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS---------------------- 283
           AC +   L  G+++H    K G + D+ V +AL+  Y+                      
Sbjct: 455 ACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIIS 514

Query: 284 ---------KRGMPSDACKLFSELK---------VYDTIL-------------------- 305
                    K G+ ++A  +F +++          Y +IL                    
Sbjct: 515 WTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI 574

Query: 306 ----------LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                      NT++ +YS CG ++DA+ +F  M  + ++++N+MI G + +    EAL 
Sbjct: 575 EAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALK 634

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  + +  L+ DK +  ++++ACAN  SLE  +++ + V   G  SD  +  +LV  Y 
Sbjct: 635 LFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYA 694

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                  D L LF  M+  G+KP I+TF +
Sbjct: 695 KCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVS 754

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H GL++EG+++F +M   + I P IEHY CMVDL  RAG L+E   LI+ MPF+
Sbjct: 755 LLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQ 814

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
           A+  +W ++L  C  HG+  +  + AE  ++LDP+NA  Y+ LS ++A +G W+ ++ +R
Sbjct: 815 ANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLR 874

Query: 563 DIMREKHVGKLPGCSWAD 580
            +M ++ V K PG SW +
Sbjct: 875 KLMEQRGVTKEPGRSWIE 892



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 148/594 (24%), Positives = 266/594 (44%), Gaps = 110/594 (18%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           DY+ ++L+ C     +  G+++H H ++   +     + N L+ MY++CG+  +A  +++
Sbjct: 143 DYM-KMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTV-NALINMYIQCGSIEEARQVWN 200

Query: 66  EM--PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKADLAA 120
           ++    R   SWNAM+ G+++ G+ E++L+L   M Q       +  M +    K+  +A
Sbjct: 201 KLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSP-SA 259

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           LE G++IH   +   L FD                 N AN +LNM               
Sbjct: 260 LECGREIHVEAMKARLLFD----------------VNVANCILNM--------------- 288

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA CG +++AR VFD+    S V W  +I GY        A  +F KM++ GV+ +  T 
Sbjct: 289 YAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITY 348

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            +VL+A S    L+ GK VH H    G   D+ V +AL+  Y+K G   D  ++F +L  
Sbjct: 349 INVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVN 408

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            D I  NTMI   +  G  E+A  I+  M  + ++                         
Sbjct: 409 RDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMP------------------------ 444

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
                  +K +   +++AC N ++L  G ++ +RV   G   D  +  +L+  Y +C   
Sbjct: 445 -------NKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSI 497

Query: 418 ------------------------------GYDALALFNEMRNTGVKPTIITFTAILSAC 447
                                         G +ALA+F +M+  G+KP  +T+T+IL+AC
Sbjct: 498 KDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNAC 557

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
                +  G++    +  +  +  +    + +V++++  G + +A  + ++M  + D+  
Sbjct: 558 SSPAALDWGRRIHQQV-IEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT-QRDIVA 615

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSG--EWEK 557
           +++++ G  AH       K+ +R+ E  L P+    YI + +  A SG  EW K
Sbjct: 616 YNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV-TYINMLNACANSGSLEWAK 668


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 295/602 (49%), Gaps = 99/602 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N LL  Y   G    A  +FD MP RN  + N+++    + G      +LF  +PQ++  
Sbjct: 50  NTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAV 109

Query: 105 SWNMLISGFA-----------------------------------KADLAALEYGKQIHS 129
           S+N L++GF+                                    + L     G+Q+H 
Sbjct: 110 SYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHC 169

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            IL  G    +  GS LV++Y K G    A +V + M+  +    + +I+G   C  + +
Sbjct: 170 QILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAE 229

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR +F+   +  S+ W +M++G   N  ++EAL +F +MR  GV  D  T  S+L+AC +
Sbjct: 230 ARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGA 289

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  LE GKQ+H +  +    D+V V SAL+D YSK                         
Sbjct: 290 LAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSK------------------------- 324

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                 C  +  A+ +FR M  K++ISW +MIVG  QNG   EA+ +F  M +  ++ D 
Sbjct: 325 ------CRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDD 378

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNE 427
           F+L SVIS+CAN++SLE G Q      + GL     +S +LV  Y KCG   DA  LF+E
Sbjct: 379 FTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDE 438

Query: 428 MR-------------------------------NTGVKPTIITFTAILSACDHCGLVKEG 456
           M                                + GVKP  +TF  +LSAC   GLV +G
Sbjct: 439 MSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKG 498

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
           + +F +M+  + I P  +HY+CM+DL++R+G L +A   I+QMP   D   W+++L  C 
Sbjct: 499 RSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACR 558

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
             GD  +G+  AE +++LDP+N  +Y+ L S+ A+ GEW   + +R  MR++ V K PGC
Sbjct: 559 LRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGC 618

Query: 577 SW 578
           SW
Sbjct: 619 SW 620



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 214/477 (44%), Gaps = 72/477 (15%)

Query: 162 VLNMMKEPDD-FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN--ED 218
           +L  +  P   + L+ L++ YA+ G +  ARRVFD     + V  NS++S         D
Sbjct: 36  ILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRD 95

Query: 219 TEALLLFHKMR-------------------------------RNGVLEDASTLASVLSAC 247
            E L      R                                 GV     T++ V+   
Sbjct: 96  MERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVA 155

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           S+LG    G+QVH    ++G        S L+D Y+K G   DA ++F E++  + ++ N
Sbjct: 156 SALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCN 215

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           TMIT    C  + +A+ +F  +  +  I+W +M+ GL+QNG   EALD+F  M    + +
Sbjct: 216 TMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGI 275

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK----------- 416
           D+++  S+++AC  +++LE G+Q+ A +T    + +  + ++LVD Y K           
Sbjct: 276 DQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVF 335

Query: 417 ----------------------CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                 CG +A+ +F+EM+  G+KP   T  +++S+C +   ++
Sbjct: 336 RRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLE 395

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG + F  +     + P +   + +V L+ + G + +A  L ++M F   V  W++++ G
Sbjct: 396 EGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALVMG 453

Query: 515 CVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
               G       + E+M+   + P+    +I + S  + SG  +K       M++ H
Sbjct: 454 YAQFGKAKETIDLFEKMLSKGVKPDGV-TFIGVLSACSRSGLVDKGRSYFHSMQQDH 509



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 17/183 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G L   + ++N L+ +Y +CG+  DA  LFDEM
Sbjct: 381 LGSVISSCANLASLEEGAQFHCLALVSG-LRPYVTVSNALVTLYGKCGSIEDAHRLFDEM 439

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              +  SW A++ G+ + G  ++++ LF  M  K    +  ++  ++S  +++ L  ++ 
Sbjct: 440 SFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGL--VDK 497

Query: 124 GKQ-IHS----HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSAL 177
           G+   HS    H +V   D  +     +++LY + G    A + +  M   PD F  + L
Sbjct: 498 GRSYFHSMQQDHDIVPLDDHYTC----MIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATL 553

Query: 178 ISG 180
           +S 
Sbjct: 554 LSA 556


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 200/675 (29%), Positives = 328/675 (48%), Gaps = 141/675 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            L SC +  ++  G+++H   ++ G+L   + +AN +L MY +CG+  +A  +FD+M ++
Sbjct: 132 FLSSCKSPGALEWGREIHFQAMQAGLLFD-VKVANCILNMYAKCGSIEEAREVFDKMEKK 190

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  SW   I G+   G  E + ++F  M Q+    N  ++  +++ F+    AAL++GK 
Sbjct: 191 SVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP--AALKWGKA 248

Query: 127 IHSHILVNGLDFDSVLGSSLVNL------YGKC-------------------------GD 155
           +HS IL  G + D+ +G++LV +      Y  C                         G 
Sbjct: 249 VHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGY 308

Query: 156 FNSANQVLNMMKE----PDDF--------CLS---------------------------A 176
           +  A++V N M+     P+          C++                           A
Sbjct: 309 WEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNA 368

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LIS Y+ CG + DAR VFD+      + W +MI G   +    EAL ++ +M++ GV  +
Sbjct: 369 LISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPN 428

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             T  S+L+ACSS   LE G+++H    + G+  D  V                      
Sbjct: 429 RVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVG--------------------- 467

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                     NT++ +YS CG ++DA+ +F  M  + ++++N+MI G + +    EAL L
Sbjct: 468 ----------NTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKL 517

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  + +  L+ DK +  ++++ACAN  SLE   ++   V   G  SD  +  +LV  Y K
Sbjct: 518 FDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAK 577

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                  DAL LF  M+  GVKP I+TF ++
Sbjct: 578 CGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSL 637

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC H GL++EG+++F +M   + I P IEHY CMVDL  RAG L+EA  LI+ MPF+A
Sbjct: 638 LSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQA 697

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           +  +W ++L  C  HG+  +  + AE  ++LD +NA  Y+ LS ++A +G W+ ++ +R 
Sbjct: 698 NTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRK 757

Query: 564 IMREKHVGKLPGCSW 578
           +M ++ V K PG SW
Sbjct: 758 LMEQRGVTKEPGRSW 772



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 148/604 (24%), Positives = 271/604 (44%), Gaps = 112/604 (18%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALL 62
           DY+ ++L+ C     +  G+Q+H H ++    + T+P     N L+ MY++CG+  +A  
Sbjct: 25  DYM-KMLKRCIEVKDLVAGRQVHQHIIQ----HRTVPDQYTVNALINMYIQCGSIEEARQ 79

Query: 63  LFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DL 118
           ++ ++    R   SWNAM+ G+++ G+ EK+L+L   M Q         I  F  +    
Sbjct: 80  VWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSP 139

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            ALE+G++IH   +  GL FD  + + ++N+Y KCG    A +V + M++      +  I
Sbjct: 140 GALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITI 199

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
            GYA+CG+                                  A  +F KM + GV+ +  
Sbjct: 200 GGYADCGR-------------------------------SETAFEIFQKMEQEGVVPNRI 228

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T  SVL+A SS   L+ GK VH      G   D  V +AL+  Y+K G   D  ++F +L
Sbjct: 229 TYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL 288

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              D I  NTMI                                GL++ G   EA +++ 
Sbjct: 289 VNRDLIAWNTMIG-------------------------------GLAEGGYWEEASEVYN 317

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC- 417
            M +  +  +K +   +++AC N ++L  G+++ +RV   G  SD  +  +L+  Y +C 
Sbjct: 318 QMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCG 377

Query: 418 --------------------------------GYDALALFNEMRNTGVKPTIITFTAILS 445
                                           G +AL ++ EM+  GV+P  +T+T+IL+
Sbjct: 378 SIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILN 437

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC     ++ G++    +  +  +  +    + +V++++  G + +A  + ++M  + D+
Sbjct: 438 ACSSPAALEWGRRIHQQVV-EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDI 495

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRD 563
             +++++ G  AH       K+ +R+ E  L P+    YI + +  A SG  E +  I  
Sbjct: 496 VAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV-TYINMLNACANSGSLEWAREIHT 554

Query: 564 IMRE 567
           ++R+
Sbjct: 555 LVRK 558



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 165/361 (45%), Gaps = 46/361 (12%)

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
           E   A+ +   +++ G   ++S    +L  C  +  L  G+QVH H         +I   
Sbjct: 3   EKDGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQH---------IIQHR 53

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSL 334
            + D Y+                      +N +I +Y  CG IE+A+ +++ +    +++
Sbjct: 54  TVPDQYT----------------------VNALINMYIQCGSIEEARQVWKKLSYMERTV 91

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
            SWN+M+VG  Q G   +AL L   M +  L  D+ ++ S +S+C +  +LE G ++  +
Sbjct: 92  HSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQ 151

Query: 395 VTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
               GL  D  ++  +++ Y KCG   +A  +F++M     K +++++T  +     CG 
Sbjct: 152 AMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKME----KKSVVSWTITIGGYADCGR 207

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN--EAVN-LIEQMPFEADVGMWS 509
            +   + F  M+ Q  + P    Y  +++ F+    L   +AV+  I     E+D  + +
Sbjct: 208 SETAFEIFQKME-QEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGT 266

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           ++++     G     R+V E+++  D     A+  +    A  G WE++S + + M+ + 
Sbjct: 267 ALVKMYAKCGSYKDCRQVFEKLVNRD---LIAWNTMIGGLAEGGYWEEASEVYNQMQREG 323

Query: 570 V 570
           V
Sbjct: 324 V 324



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ Y+  +L +C    S+   +++H   ++KG   S   + N L+  Y +CG+ +DA ++
Sbjct: 530 KVTYI-NMLNACANSGSLEWAREIHT-LVRKGGFFSDTSVGNALVSTYAKCGSFSDASIV 587

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLA 119
           F++M +RN  SWNA+I G  + G  + +LQLF  M     + +  ++  L+S  + A L 
Sbjct: 588 FEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGL- 646

Query: 120 ALEYGKQIHSHILVNGLDFDSVLG----SSLVNLYGKCGDFNSANQVLNMM 166
            LE G++   +      DF  +        +V+L G+ G  + A  ++  M
Sbjct: 647 -LEEGRR---YFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTM 693


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/577 (33%), Positives = 299/577 (51%), Gaps = 44/577 (7%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N LL  Y R G+  DA  +FD MP RN FS+NA++    +LG  + +L LF  +P  +  
Sbjct: 54  NTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQC 113

Query: 105 SWNMLISGFAKADLA--ALEYGKQIHS-HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
           S+N +++  A+      AL +   +H+   ++N   F S L +       + G+   A  
Sbjct: 114 SYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHA-L 172

Query: 162 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221
           V       D +  +AL+  YA C +  +A++VFD   + + V WNS+I+ Y  N    EA
Sbjct: 173 VTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEA 232

Query: 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLD 280
           L LF +M ++G + D  TLASV+SAC+ L     G+QVH    K     +D+++ +AL+D
Sbjct: 233 LALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVD 292

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K G   +A  +F  + +   +   +MIT Y+    + DA+ +F  M  K++++WN +
Sbjct: 293 MYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVL 352

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           I   + N    EAL LF  + +  +    ++  +V++ACAN+++L+LG+Q    V   G 
Sbjct: 353 IATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGF 412

Query: 401 ------DSDQIISTSLVDFYCKCG---------------------------------YDA 421
                 +SD  +  SLVD Y K G                                  DA
Sbjct: 413 RFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDA 472

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           L LF  M  +  +P  +T   +LSAC H GLVKEG+++F +M   + I P  +HY+CM+D
Sbjct: 473 LLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMID 532

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
           L  RAG L E   LIE MP E D  +W+S+L  C  H +  +G   A ++ ELDP+N+  
Sbjct: 533 LLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGP 592

Query: 542 YIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           Y+ LS+++A  G+W     +R  M+ + V K PGCSW
Sbjct: 593 YVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSW 629



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 180/398 (45%), Gaps = 52/398 (13%)

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           ++ L ++L++ Y + G  + A +V + M   + F  +AL+S  A  G+ +DA  +F    
Sbjct: 49  ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIP 108

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           D     +N++++    +    +AL     M  +  + +A + AS LSAC+S      G+Q
Sbjct: 109 DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQ 168

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           VH    K     DV + +AL+D Y+K   P +A K+F  +   + +  N++IT Y     
Sbjct: 169 VHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCY----- 223

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
                                      QNG   EAL LF  M K     D+ +LASV+SA
Sbjct: 224 --------------------------EQNGPVDEALALFVRMMKDGFVPDEVTLASVMSA 257

Query: 379 CANISSLELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKP 435
           CA +++   G QV  R V       D +++ +LVD Y KCG  ++A  +F+ M       
Sbjct: 258 CAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRM----AIR 313

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
           ++++ T++++       V + Q  F  M     ++  +  ++ ++  +A      EA+ L
Sbjct: 314 SVVSETSMITGYAKSANVGDAQAVFLQM-----VEKNVVAWNVLIATYAHNSEEEEALRL 368

Query: 496 IEQMPFEADVGMWSS------ILRGCVAHGDKGLGRKV 527
             ++  E+   +W +      +L  C    +  LG++ 
Sbjct: 369 FVRLKRES---VWPTHYTYGNVLNACANLANLQLGQQA 403



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 123/290 (42%), Gaps = 70/290 (24%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C    +   G+Q+H   +K       + + N L+ MY +CG   +A  +FD M
Sbjct: 251 LASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRM 310

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
             R+  S  +MI G+ K  +   +  +F  M +KN  +WN+LI+ +A             
Sbjct: 311 AIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFV 370

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDS------VLGSSLVN 148
                                A+LA L+ G+Q H H+L  G  FDS       +G+SLV+
Sbjct: 371 RLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVD 430

Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
           +Y K G  +   +V   M   D+   +A+I GYA  G+  D                   
Sbjct: 431 MYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKD------------------- 471

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
                       ALLLF +M  +    D+ T+  VLSAC   G ++ G++
Sbjct: 472 ------------ALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRR 509


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 201/651 (30%), Positives = 323/651 (49%), Gaps = 80/651 (12%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNST------------------------- 40
           D+ ARLLQ C T  +   G+ +H   +K G+L S                          
Sbjct: 24  DHCARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREAR 83

Query: 41  -----LPIANR-------LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88
                +P A R       LL +Y + G   DA  +F EMP R+  SW  M+ G  ++G  
Sbjct: 84  RLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRF 143

Query: 89  EKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGS 144
            +++++F  M         F+   ++S  A  +  A   G+++HS ++  GL     + +
Sbjct: 144 GEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATE--ARGVGRKVHSFVVKLGLSSCVPVAN 201

Query: 145 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 204
           S++N+YGKCGD  +A  V   M E      +A++S  A+ G+M+ A  +F+   D + V 
Sbjct: 202 SVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVS 261

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVL-EDASTLASVLSACSSLGFLEHGKQVHGHA 263
           WN++I+GY  N  + +AL  F +M     +  D  T+ SVLSAC++LG +  GKQVH + 
Sbjct: 262 WNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYI 321

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD--TILLNTMITVYSSCGRIED 321
            +  +     V +AL+  Y+K G   +A  +  +  + D   I    ++  Y   G ++ 
Sbjct: 322 LRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKH 381

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+ +F  M N+ +++W +MIVG  QNG   EA++LF  M +     + +++A+V+S CA+
Sbjct: 382 AREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCAS 441

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------------------ 417
           ++ LE G+Q+  +      +    +S S+V  Y +                         
Sbjct: 442 LACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTS 501

Query: 418 ----------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                     G DA+ LF EM   GVKP  ITF  +LSAC H G V EG+++F  ++ ++
Sbjct: 502 MIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKH 561

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
            I PE+ HY+CMVDL ARAG  +EA   I+QMP E D   W S+L  C  H +  L    
Sbjct: 562 GIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELA 621

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           AE+++ +DP N+ AY  LS++++  G W  ++ I    ++K V K  G SW
Sbjct: 622 AEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSW 672



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 161/346 (46%), Gaps = 26/346 (7%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS-----D 290
           D+   A +L  C +      G+ +H  A K G++    + + LL  Y+           +
Sbjct: 22  DSDHCARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFRE 81

Query: 291 ACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
           A +LF E+     +    N+++++Y+  GR+ DA+ +F  MP +  +SW  M+VGL++ G
Sbjct: 82  ARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVG 141

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              EA+ +F +M    L   +F+L +V+S+CA   +  +G +V + V  +GL S   ++ 
Sbjct: 142 RFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVAN 201

Query: 409 SLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
           S+++ Y KCG    A A+F  M    V     ++ A++S   H G +      F+ M   
Sbjct: 202 SVLNMYGKCGDAETARAVFERMPERSVS----SWNAMVSLDAHLGRMDLALSLFENMP-- 255

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM----PFEADVGMWSSILRGCVAHGDKG 522
              D  I  ++ ++  + + G   +A+    +M        D    +S+L  C   G   
Sbjct: 256 ---DRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVS 312

Query: 523 LGRKVAERMIELD-PENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           +G++V   ++    P        L S++A SG  E +   R +M++
Sbjct: 313 IGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENA---RGVMQQ 355


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 199/653 (30%), Positives = 325/653 (49%), Gaps = 112/653 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +  +C +      G++ H   +K G L S + + N LL MY +CG   DAL +F ++
Sbjct: 141 FATVFSACGSLLDADCGRRTHGVVIKVG-LESNIYVVNALLCMYAKCGLNADALRVFRDI 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAD------ 117
           P  N  ++  M+ G  +    +++ +LF +M +K    +  S + ++   AK +      
Sbjct: 200 PEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPC 259

Query: 118 --LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-----------N 164
             ++    GKQ+H+  +  G + D  L +SL+++Y K GD +SA +V            N
Sbjct: 260 HGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWN 319

Query: 165 MM------------------------KEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
           +M                         EPDD     +++     G +   R++FD     
Sbjct: 320 IMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCMPCP 379

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           S   WN+++SGY  N +  EA+ LF KM+      D +TLA +LS+C+ LGFLE GK+VH
Sbjct: 380 SLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVH 439

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
             + K G  DDV VAS+L                               I VYS CG++E
Sbjct: 440 AASQKFGFYDDVYVASSL-------------------------------INVYSKCGKME 468

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            +KH+F  +P   ++ WNSM+ G S N    +AL  F  M +L     +FS A+V+S+CA
Sbjct: 469 LSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCA 528

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
            +SSL  G+Q  A++   G   D  + +SL++ YCKCG                      
Sbjct: 529 KLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNE 588

Query: 419 -----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                      ++AL L+N+M ++G KP  IT+ A+L+AC H  LV EG + F+AM  +Y
Sbjct: 589 MIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKY 648

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
            + P++ HY+C++D  +RAG  NE   +++ MP + D  +W  +L  C  H +  L ++ 
Sbjct: 649 GVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRIHANLSLAKRA 708

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           AE +  LDP+N+ +Y+ L++++++ G+W+ + ++RD+M    V K PG S  D
Sbjct: 709 AEELYRLDPQNSASYVLLANMYSSLGKWDDAHVVRDLMSHNQVRKDPGYSRND 761



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 157/594 (26%), Positives = 273/594 (45%), Gaps = 85/594 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+Q C T+ +   GK +H    +  + + T  ++N  +++Y +C +   A  +FD +
Sbjct: 9   LANLVQHCITNKAHLSGKVVHARLFRLALFSDTF-LSNHFIELYSKCDHIASACHVFDNI 67

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALE-YG 124
           P +N FSWNA++  + K  + + + +LF  MPQ+N  S N LIS   +   +  AL+ Y 
Sbjct: 68  PHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYD 127

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
             +   ++ + + F +V  +    L   CG   +   V+ +  E + + ++AL+  YA C
Sbjct: 128 SVMLDGVIPSHITFATVFSACGSLLDADCGR-RTHGVVIKVGLESNIYVVNALLCMYAKC 186

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G   DA RVF    + + V + +M+ G    N+  EA  LF  M R G+  D+ +L+S+L
Sbjct: 187 GLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSML 246

Query: 245 SACSS----------LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
             C+           +     GKQ+H  + K+G   D+ + ++LLD Y+K G    A K+
Sbjct: 247 GVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKV 306

Query: 295 FSELKVYDTILLNTMITVY--------------------------------SSC---GRI 319
           F  L  +  +  N MI  Y                                ++C   G +
Sbjct: 307 FVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDV 366

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
              + IF  MP  SL SWN+++ G +QN    EA++LF  M       D+ +LA ++S+C
Sbjct: 367 RTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSC 426

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------------------- 417
           A +  LE G++V A     G   D  +++SL++ Y KC                      
Sbjct: 427 AELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWN 486

Query: 418 -----------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                      G DAL+ F +MR  G  P+  +F  ++S+C     + +GQ++   +   
Sbjct: 487 SMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKD 546

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
             +D +I   S +++++ + G +N A    + MP    V  W+ ++ G   +GD
Sbjct: 547 GFLD-DIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTV-TWNEMIHGYAQNGD 598



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 202/429 (47%), Gaps = 40/429 (9%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK +H+ +    L  D+ L +  + LY KC    SA  V + +   + F  +A+++ Y  
Sbjct: 25  GKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCK 84

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
              +  A R+F +    ++V  N++IS  +    + +AL  +  +  +GV+    T A+V
Sbjct: 85  ARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATV 144

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
            SAC SL   + G++ HG   KVG+  ++ V +ALL  Y+K G+ +DA ++F ++   + 
Sbjct: 145 FSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNE 204

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIV-------------GLSQ 346
           +   TM+   +   +I++A  +FR M  K +    +S +SM+              G+S 
Sbjct: 205 VTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCHGIST 264

Query: 347 N--GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
           N  G  +  L +     KL    D     S++   A I  ++  E+VF     + L+   
Sbjct: 265 NAQGKQMHTLSV-----KLGFERDLHLCNSLLDMYAKIGDMDSAEKVF-----VNLNRHS 314

Query: 405 IISTSLV--DFYCKCGYDALALF-NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
           ++S +++   +  +C  +  A +   M++ G +P  +T+  +L+AC   G V+ G++ FD
Sbjct: 315 VVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFD 374

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE---ADVGMWSSILRGCVAH 518
            M       P +  ++ ++  + +     EAV L  +M F+    D    + IL  C   
Sbjct: 375 CMPC-----PSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAEL 429

Query: 519 GDKGLGRKV 527
           G    G++V
Sbjct: 430 GFLEAGKEV 438


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 198/643 (30%), Positives = 325/643 (50%), Gaps = 70/643 (10%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D    LLQS        +G+ +H   +K G+    + + N LL +Y++ G+ +DA  LFD
Sbjct: 13  DACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFD 72

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---------- 115
           EMP +  FSWN ++    K G+ + + ++F+ +PQ +  SW  +I G+            
Sbjct: 73  EMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHA 132

Query: 116 -----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 152
                                  A   AL+ GK++HS ++  G      + +SL+N+Y K
Sbjct: 133 FLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAK 192

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
           CGD   A  V + M+  D    + +IS +    + + A  +FD+ TD   V WNS+I+GY
Sbjct: 193 CGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGY 252

Query: 213 ISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
                D  AL  F  M ++  L+ D  TL SVLSAC++   L+ GKQ+H H  +  V   
Sbjct: 253 CHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIA 312

Query: 272 VIVASALLDTYSKRGMPSDACKL--FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
             V +AL+  Y+K G    A ++   +     + I   +++  Y   G I+ A+ IF ++
Sbjct: 313 GAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSL 372

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
            ++ +++W +MIVG +QNG   +AL LF  M +   + + ++LA+V+S  ++++SL+ G+
Sbjct: 373 KHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGK 432

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCK--------------CGY---------------- 419
           Q+ A    +   S   +  +L+  Y +              C Y                
Sbjct: 433 QLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQH 492

Query: 420 ----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
               +A+ LF +M    +KP  IT+  +LSAC H GLV++G+ +F+ MK  ++I+P   H
Sbjct: 493 GLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSH 552

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y+CM+DL  RAG L EA N I  MP E DV  W S+L  C  H    L +  AE+++ +D
Sbjct: 553 YACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLID 612

Query: 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           P N+ AY+ L++  +  G+WE ++ +R  M++K V K  G SW
Sbjct: 613 PNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSW 655


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 198/625 (31%), Positives = 296/625 (47%), Gaps = 99/625 (15%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           H    LH   L+         + N LL  Y + G    A  +FD  P  N F++NA++  
Sbjct: 22  HAAGALHCVILRTLPHPPPTHLLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLST 81

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF---------------------------- 113
                  +    LF  M Q++  S+N +I+GF                            
Sbjct: 82  LAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRI 141

Query: 114 -------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
                  A + L     G+Q H  IL  G   ++ +GS LV +Y K G    A +V + M
Sbjct: 142 TMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEM 201

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
              +    + +I+G   C  + +ARR+F+  TD   + W +M++G+  N  +++AL  F 
Sbjct: 202 DGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFR 261

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
           +MR  G+  D  T  S+L+AC +L  LE GKQ+H +  +    D+V V SAL+D YSK  
Sbjct: 262 RMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSK-- 319

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
                                        C  I+ A+  FR M  K++ISW ++IVG  Q
Sbjct: 320 -----------------------------CRSIKPAETAFRRMSCKNIISWTALIVGYGQ 350

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           NG   EA+ +F  M +  +  D F+L SVIS+CAN++SLE G Q      + GL     +
Sbjct: 351 NGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITV 410

Query: 407 STSLVDFYCKCG--YDALALFNEM---------------------RNT----------GV 433
           S +LV  Y KCG   DA  LF+EM                     + T           V
Sbjct: 411 SNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDV 470

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           KP  +TF  +LSAC   G V++G  +F +M+  + I P  +HY+CM+DL++R+G L EA 
Sbjct: 471 KPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAE 530

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             I+QMP   D   W ++L  C   GD  +G+  AE ++E+DP+N  +Y+ L S+ AT G
Sbjct: 531 EFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKG 590

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSW 578
            W + + +R  MR++ V K PGCSW
Sbjct: 591 NWNQVAQLRRGMRDRQVKKEPGCSW 615



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 9/179 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G+++  + ++N L+ +Y +CG+  DA  LFDEM
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMH-YITVSNALVTLYGKCGSIEDAHRLFDEM 434

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              +  SW A++ G+ + G  ++++ LF  M  K    +  ++  ++S  ++A    +E 
Sbjct: 435 LFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGF--VEK 492

Query: 124 G-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
           G    HS    +G+       + +++LY + G    A + +  M   PD      L+S 
Sbjct: 493 GCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSA 551


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 201/649 (30%), Positives = 328/649 (50%), Gaps = 77/649 (11%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT----DAL 61
           D+ ARLLQ C T  +   G+ +H H +K G+L ST  + N LL  Y   G       +A 
Sbjct: 210 DHYARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTY-LCNNLLAYYASVGVSRGCFREAR 268

Query: 62  LLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI--------- 110
            LFD++P  RRN F+WN+++  + K G    +  +F  MP ++  SW ++I         
Sbjct: 269 CLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRF 328

Query: 111 ------------SGFAKADL---------AALE---YGKQIHSHILVNGLDFDSVLGSSL 146
                        GFA +           AA+E    G+++H  ++  GL     + +S+
Sbjct: 329 WDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSV 388

Query: 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
           + +YGKCGD  +A  V   M+       + ++S Y + G+M  A  +F+   + S V WN
Sbjct: 389 LYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWN 448

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACK 265
           ++I+GY  N  D  AL  F +M     +E DA T+ SVLSAC++L  L+ GKQ+H +  +
Sbjct: 449 TIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILR 508

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD--TILLNTMITVYSSCGRIEDAK 323
            G+     + +AL+ TY+K G    A ++  +  V D   I    ++  Y   G  + A+
Sbjct: 509 TGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAR 568

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
            IF  M N+ +I+W +MIVG  QNG   EA++LF +M  +    +  +LA+V+SACA+++
Sbjct: 569 EIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLA 628

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------------------------- 417
            L+ G+Q+  +      +    +S +++  Y +                           
Sbjct: 629 YLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMI 688

Query: 418 --------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                   G  A+ LF EM   GVKP  IT+  +LSAC H G V +G+++++ M+ ++ I
Sbjct: 689 VAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGI 748

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P++ HY+CMVDL ARAG L EA   I++MP   D  +W S+L  C    +  L    A 
Sbjct: 749 VPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAG 808

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +++ +DP N+ AY  L+++++  G W  ++ I  + ++K V K  G SW
Sbjct: 809 KLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSW 857


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/617 (30%), Positives = 308/617 (49%), Gaps = 104/617 (16%)

Query: 3   TRI--DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           TR+  D    LLQ C    S+  G+++H   LK GI  +   + N LL MY +CG+ TDA
Sbjct: 92  TRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY-LENTLLSMYAKCGSLTDA 150

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKA 116
             +FD +  RN  SW AMIE F+      ++ + +  M     + +  ++  L++ F   
Sbjct: 151 RRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNP 210

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           +L  L+ G+++H  I   GL+ +  +G+SLV +Y                          
Sbjct: 211 EL--LQVGQKVHMEIAKAGLELEPRVGTSLVGMY-------------------------- 242

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
                A CG ++ A+ +FD+  + + V W  +I+GY    +   AL L  KM++  V  +
Sbjct: 243 -----AKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPN 297

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             T  S+L  C++   LEHGK+VH +  + G   ++ V                      
Sbjct: 298 KITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWV---------------------- 335

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                    +N +IT+Y  CG +++A+ +F  +P++ +++W +M+ G +Q G   EA+DL
Sbjct: 336 ---------VNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDL 386

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M +  ++ DK +  S +++C++ + L+ G+ +  ++   G   D  + ++LV  Y K
Sbjct: 387 FRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAK 446

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                  +AL  F +M+  G+KP  +TFT++
Sbjct: 447 CGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSV 506

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC H GLV+EG+K F +M   Y I P +EHYSC VDL  RAG L EA N+I  MPF+ 
Sbjct: 507 LSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQP 566

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
              +W ++L  C  H D   G + AE +++LDP++  AY+ LS+I+A +G +E +  +R 
Sbjct: 567 GPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQ 626

Query: 564 IMREKHVGKLPGCSWAD 580
           +M ++ V K PG SW +
Sbjct: 627 VMEKRDVVKEPGQSWIE 643



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 133/328 (40%), Gaps = 66/328 (20%)

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           EAL + + M   G    +     +L  C+ L  LE G++VH    K G+  +  + + LL
Sbjct: 79  EALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 138

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
             Y+K G                                + DA+ +F  + +++++SW +
Sbjct: 139 SMYAKCG-------------------------------SLTDARRVFDGIRDRNIVSWTA 167

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           MI         +EA   +  M     + DK +  S+++A  N   L++G++V   +   G
Sbjct: 168 MIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAG 227

Query: 400 LDSDQIISTSLVDFYCKCG--------YD-------------------------ALALFN 426
           L+ +  + TSLV  Y KCG        +D                         AL L  
Sbjct: 228 LELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLE 287

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +M+   V P  IT+T+IL  C     ++ G+K    +  Q     EI   + ++ ++ + 
Sbjct: 288 KMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYI-IQSGYGREIWVVNALITMYCKC 346

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRG 514
           G L EA  L   +P   DV  W++++ G
Sbjct: 347 GGLKEARKLFGDLPHR-DVVTWTAMVTG 373



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/268 (20%), Positives = 112/268 (41%), Gaps = 68/268 (25%)

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           DT+  +  +++    GR+++A  I  TM  +    ++ +  GL Q               
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQE-------------- 105

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--Y 419
                            CA + SLE G +V A +   G+  ++ +  +L+  Y KCG   
Sbjct: 106 -----------------CARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLT 148

Query: 420 DALALFNEMRN-------------------------------TGVKPTIITFTAILSACD 448
           DA  +F+ +R+                                G KP  +TF ++L+A  
Sbjct: 149 DARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFT 208

Query: 449 HCGLVKEGQK-WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
           +  L++ GQK   +  K    ++P +   + +V ++A+ G +++A  + +++P E +V  
Sbjct: 209 NPELLQVGQKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDISKAQVIFDKLP-EKNVVT 265

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELD 535
           W+ ++ G    G   +  ++ E+M + +
Sbjct: 266 WTLLIAGYAQQGQVDVALELLEKMQQAE 293


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/661 (28%), Positives = 322/661 (48%), Gaps = 127/661 (19%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y++ G+  +A  LFDEMP +N  SWN+++ G+       ++ +LF+ MP++N  
Sbjct: 268 NAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSV 327

Query: 105 SWNMLISGF--------------------AKAD-------------LAALEYGKQIHSHI 131
           SW ++ISG+                    A+ D             L  LE    +    
Sbjct: 328 SWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIA 387

Query: 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA- 190
           +  G + D V+GS+++N Y + G  + A      M E +++  + +I+ +A CG+++DA 
Sbjct: 388 IKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAI 447

Query: 191 ------------------------------RRVFDRTTDTSSVMWNS------------- 207
                                         R +FD   + + V WN+             
Sbjct: 448 QLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKE 507

Query: 208 ------------------MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
                             MI+G++ N E  EAL L  ++ R+G +   S+  S LSAC++
Sbjct: 508 AKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACAN 567

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           +G +E G+ +H  A K G   +  V + L+  Y+K G   D   +F  ++V DT+  N++
Sbjct: 568 IGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSL 627

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           I+  S    ++DA+ +F  MP + ++SW ++I    Q G    ALDLF +M    ++ ++
Sbjct: 628 ISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQ 687

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------- 419
            ++ S++SAC N+ +++LGEQ  A +  +G D+   +  SL+  Y KCGY          
Sbjct: 688 LTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFCVFEEM 747

Query: 420 ----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                 +A+ +F +M   G+ P  ++F  +L AC H GLV EG 
Sbjct: 748 PEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGW 807

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
             F++M  +Y I P + HY+CMVDL  RAG L+EA  LIE MP + D  +W ++L  C  
Sbjct: 808 AHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRI 867

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           H +  LG++VAER+ ++    +  Y+ LS++FA+ G W+K + IR +M+++ + K PG S
Sbjct: 868 HRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGIS 927

Query: 578 W 578
           W
Sbjct: 928 W 928



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 139/506 (27%), Positives = 229/506 (45%), Gaps = 77/506 (15%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           L + +   T+     ++  Y + G    A L+FDE+   N  +WNA+I G+ + G  +++
Sbjct: 449 LYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEA 508

Query: 92  LQLFNVMPQKNDFSWNMLISGFAK---------------------------------ADL 118
             LF  MP KN  SW  +I+GF +                                 A++
Sbjct: 509 KDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANI 568

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             +E G+ IHS  +  G  F+S + + L+++Y KCG+    + V   ++  D    ++LI
Sbjct: 569 GDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLI 628

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           SG +    ++DAR VF++      V W ++IS Y+       AL LF  M   G+  +  
Sbjct: 629 SGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQL 688

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T+ S+LSAC +LG ++ G+Q H    K+G                               
Sbjct: 689 TVTSLLSACGNLGAIKLGEQFHALIFKLG------------------------------- 717

Query: 299 KVYDTILL--NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
             +DT L   N++IT+Y  CG  ED   +F  MP   LI+WN+++VG +QNG   EA+ +
Sbjct: 718 --FDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKI 774

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYC 415
           F  M    +  D+ S   V+ AC++   ++ G   F  +T   G+       T +VD   
Sbjct: 775 FEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLG 834

Query: 416 KCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
           + GY  +A AL   + N  VKP  + + A+L AC     V+ GQ+   A +      P+ 
Sbjct: 835 RAGYLSEAEAL---IENMPVKPDSVIWEALLGACRIHRNVELGQR--VAERLFQMTKPKS 889

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQM 499
             Y  + +LFA  G  ++   + + M
Sbjct: 890 ATYVLLSNLFASQGMWDKVAEIRKLM 915



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 160/654 (24%), Positives = 280/654 (42%), Gaps = 151/654 (23%)

Query: 16  NTHHSIHVGKQLHLHFL---KKGILNSTLPIA-----NRLLQMYMRCGNPTDALLLFDEM 67
           NT H+  +       F+   K G  N   P       N  +Q   R G   +A  +F+EM
Sbjct: 138 NTRHARWMDYLQQFKFVIRHKSGAKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEM 197

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
            +R+  SWN+MI G+ + G  +++  LF+    KN  +W +L++G+AK     +E  +++
Sbjct: 198 IQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKE--GRIEEAREV 255

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
              +     + + V  +++++ Y + GD  +A ++ + M E +    +++++GY +C +M
Sbjct: 256 FESMT----ERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRM 311

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           ++AR +FD+  + +SV W  MISGY+  ++  EA  +F KM R     D S    VLSA 
Sbjct: 312 SEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI 371

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----------MPS------- 289
           + L  LE    +   A K G   DV+V SA+L+ Y++ G           MP        
Sbjct: 372 TGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWT 431

Query: 290 -------------DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
                        DA +L+  +          M+T Y+  GRI+ A+ IF  + N ++++
Sbjct: 432 TMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVA 491

Query: 337 WNSMIVGLSQNGSPIEALDLFCNM----------------------NKLDLRMD------ 368
           WN++I G +QNG   EA DLF  M                        L+L ++      
Sbjct: 492 WNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGS 551

Query: 369 ---KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
                S  S +SACANI  +E+G  + +     G   +  +   L+  Y KCG       
Sbjct: 552 VPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSH 611

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAIL-------- 444
                                      DA  +F +M     K  ++++TAI+        
Sbjct: 612 VFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMP----KRDVVSWTAIISAYVQAGH 667

Query: 445 ---------------------------SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
                                      SAC + G +K G++ F A+ ++   D  +   +
Sbjct: 668 GEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ-FHALIFKLGFDTFLFVGN 726

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            ++ ++ + G   +   + E+MP E D+  W+++L GC  +G      K+ E+M
Sbjct: 727 SLITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGCAQNGLGKEAIKIFEQM 778


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 203/626 (32%), Positives = 323/626 (51%), Gaps = 71/626 (11%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
            GK +H   +K G L+  + + N L+  Y + G   DA  +FDEMP ++ FSWN ++ G+
Sbjct: 31  TGKSIHARIIKAG-LHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGY 89

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------------------------- 115
            K G  E++ ++F  MP+ +  SW  +I G+ +                           
Sbjct: 90  AKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLT 149

Query: 116 ---ADLAALE---YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
              A  AA+E    G+++HS ++ +GL     + +SL+N+Y K GD  +A  V + MK  
Sbjct: 150 NVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLK 209

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
                + +IS +   G ++ A+  F++  +   V WN+MISGY  +  D EAL +F KM 
Sbjct: 210 STSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKML 269

Query: 230 RNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
            +   + D  TLAS LSAC++L  L+ GKQ+H H  +        V +AL+  YSK G  
Sbjct: 270 MDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGV 329

Query: 289 SDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
             A K+  +  +   D I    ++  Y   G I  A+ IF ++  + +++W +MIVG  Q
Sbjct: 330 EIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQ 389

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           NG   +A++LF +M K   + + ++LA+++S  ++++SL+ G Q+ A  T  G  S   +
Sbjct: 390 NGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSV 449

Query: 407 STSLVDFYCKC----------------------------------GYDALALFNEMRNTG 432
           S +L+  Y K                                   G +AL LF  M   G
Sbjct: 450 SNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENG 509

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           +KP  IT+  +LSAC H GLV++G+ +++ M+  + I P   HY+CM+DLF RAG L EA
Sbjct: 510 IKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEA 569

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
              IE MP E DV  W S+L  C  H +  L    AER++ ++PEN+ AY  L+++++  
Sbjct: 570 HAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSAC 629

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSW 578
           G+WE ++ IR  M++K V K  G SW
Sbjct: 630 GQWENAANIRKSMKDKGVKKDQGFSW 655



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 150/537 (27%), Positives = 256/537 (47%), Gaps = 87/537 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC     + +G+++H   +K G L+S + +AN LL MY + G+P  A ++FD M
Sbjct: 148 LTNVLASCAAVECLGIGRKVHSFVVKHG-LSSYISVANSLLNMYAKSGDPVTAKIVFDRM 206

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-------------- 113
             ++  SWN MI   M+ G  + +   F  M +++  SWN +ISG+              
Sbjct: 207 KLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFS 266

Query: 114 --------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                               A A+L  L+ GKQIH+HI+    D    +G++L+++Y K 
Sbjct: 267 KMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKS 326

Query: 154 GDFNSANQVL--NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           G    A +++  +M+   D    +AL+ GY   G +N ARR+FD       V W +MI G
Sbjct: 327 GGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVG 386

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           Y+ N  + +A+ LF  M + G   +  TLA++LS  SSL  L+HG+Q+H  A + G    
Sbjct: 387 YVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASS 446

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP- 330
           V V++AL+  Y+K                                G I DA+ +F  +  
Sbjct: 447 VSVSNALITMYAK-------------------------------SGSINDARWVFNLIHW 475

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
            +  I+W SMI+ L+Q+G   EAL LF  M +  ++ D  +   V+SAC ++  +E G  
Sbjct: 476 KRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRS 535

Query: 391 VFARVTIIGLDSDQIISTS-----LVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAI 443
            +  +     ++ +II T      ++D + + G   +A A    + N  ++P +I + ++
Sbjct: 536 YYNLMQ----NAHKIIPTPSHYACMIDLFGRAGLLQEAHAF---IENMPIEPDVIAWGSL 588

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVDLFARAGCLNEAVNLIEQM 499
           L++C     V+  +    A +    I+PE    YS + ++++  G    A N+ + M
Sbjct: 589 LASCKVHKNVELAEV---AAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSM 642



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 169/401 (42%), Gaps = 108/401 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKK-----GILNSTL----------PIANRLLQM-- 50
           LA  L +C    ++ +GKQ+H H ++      G + + L           IA ++++   
Sbjct: 281 LASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSM 340

Query: 51  ---------------YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF 95
                          Y++ G+   A  +FD +  R+  +W AMI G+++ G  + +++LF
Sbjct: 341 ISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELF 400

Query: 96  NVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
             M    P+ N+++   ++S    + LA+L++G+QIH+    +G      + ++L+ +Y 
Sbjct: 401 RSMIKEGPKPNNYTLATMLS--VSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYA 458

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           K G  N A  V N++    D                              ++ W SMI  
Sbjct: 459 KSGSINDARWVFNLIHWKRD------------------------------TITWTSMIIA 488

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG---HACKVGV 268
              +    EAL LF +M  NG+  D  T   VLSAC+ +G +E G+  +    +A K  +
Sbjct: 489 LAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHK--I 546

Query: 269 IDDVIVASALLDTYSKRGMPSDA----------------CKLFSELKVYDTILL------ 306
           I      + ++D + + G+  +A                  L +  KV+  + L      
Sbjct: 547 IPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAE 606

Query: 307 -------------NTMITVYSSCGRIEDAKHIFRTMPNKSL 334
                        + +  VYS+CG+ E+A +I ++M +K +
Sbjct: 607 RLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGV 647


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 165/500 (33%), Positives = 286/500 (57%), Gaps = 35/500 (7%)

Query: 116 ADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           A+  +L+ GK +H H+ V GL   ++ L + L+N+Y KCGD+ SA +V + M   + +  
Sbjct: 61  ANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSW 120

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + ++SGYA  GK+  AR++FD+  +   V WN+M+  Y  +    +AL  + ++RR G+ 
Sbjct: 121 NGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIG 180

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  + A +L+ C  +  LE  KQ HG     G + +++++S++LD Y+K     DA +L
Sbjct: 181 YNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRL 240

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F E+ + D +   TM++ Y+  G +E A+ +F  MP K+ ++W S+I G +++    +AL
Sbjct: 241 FDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKAL 300

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +LF  M  L++R D+F+ +S + A A+I+SL  G+Q+   +    +  + I+ +SL+D Y
Sbjct: 301 ELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMY 360

Query: 415 CKC----------------------------------GYDALALFNEMRNTGVKPTIITF 440
            KC                                  G +A+ +F++M   G+KP  IT 
Sbjct: 361 SKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITL 420

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +L+AC H GLV+EG + ++++   + + P  EHY+C++DL  RAG  +  +N +E+MP
Sbjct: 421 IVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMP 480

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            + +  +W+++L  C  HG+   GR+VAE++IELDP+++ AY+ LSSI A  G WE    
Sbjct: 481 CKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVEN 540

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +M E+HV K    SW +
Sbjct: 541 VRQLMNERHVRKDRAISWIE 560



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 245/500 (49%), Gaps = 70/500 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LLQ C    S+ +GK +HLH    G+      +AN L+ MY +CG+   A  +FDEM
Sbjct: 53  LAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEM 112

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----------- 116
             RN +SWN M+ G+ KLG  + + +LF+ MP+K+  SWN ++  +AK+           
Sbjct: 113 STRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYR 172

Query: 117 ----------------------DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                  +  LE  KQ H  +LV G   + V+ SS+++ Y KC 
Sbjct: 173 ELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCS 232

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
           +   A ++ + M   D    + ++SGYA  G +  AR +FD   + + V W S+I+GY  
Sbjct: 233 EMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYAR 292

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           ++   +AL LF KM    +  D  T +S L A +S+  L HGKQ+HG+  +  +  + IV
Sbjct: 293 HDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIV 352

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-S 333
            S+L+D YSK                               CG +E  + +F  M +K  
Sbjct: 353 VSSLIDMYSK-------------------------------CGCLEVGRLVFDLMGDKWD 381

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
           ++ WN++I  L+Q+G   EA+ +F +M +L ++ D+ +L  +++AC++   ++ G +++ 
Sbjct: 382 VVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYE 441

Query: 394 RVTII-GLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
            +T   G+  +Q     L+D   + G+    L N++     KP    + A+L  C   G 
Sbjct: 442 SITSCHGVIPNQEHYACLIDLLGRAGHFD-TLMNQLEKMPCKPNDEIWNALLGVCRMHGN 500

Query: 453 VKEGQKWFDAMKWQYHIDPE 472
           ++ G++  + +     +DP+
Sbjct: 501 IEFGREVAEKI---IELDPQ 517



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 177/348 (50%), Gaps = 16/348 (4%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRG 286
           + RNG+   + TLA +L  C++   L+ GK VH H    G+   +  +A+ L++ YSK G
Sbjct: 41  LSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCG 100

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
               A K+F E+   +    N M++ Y+  G+I+ A+ +F  MP K ++SWN+M++  ++
Sbjct: 101 DYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAK 160

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           +G   +AL  +  + +L +  +++S A +++ C  +  LEL +Q   +V + G  S+ +I
Sbjct: 161 SGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVI 220

Query: 407 STSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
           S+S++D Y KC    DA  LF+EM    +   ++ +T ++S     G V+  ++ FD M 
Sbjct: 221 SSSVLDAYAKCSEMGDARRLFDEM----IIRDVLAWTTMVSGYAQWGDVEAARELFDLMP 276

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDK 521
            +  +      ++ ++  +AR    ++A+ L  +M       D   +SS L    +    
Sbjct: 277 EKNPVA-----WTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASL 331

Query: 522 GLGRKVAERMIELD-PENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
             G+++   +I  +   N      L  +++  G  E   L+ D+M +K
Sbjct: 332 NHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDK 379



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           ++ LS  G   +A+     +++  +R+   +LA ++  CAN  SL+LG+ V   + + GL
Sbjct: 22  LLHLSSQGQLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGL 81

Query: 401 D-SDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
              +  ++  L++ Y KCG    A  +F+EM        + ++  +LS     G +K  +
Sbjct: 82  KRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTR----NLYSWNGMLSGYAKLGKIKPAR 137

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           K FD M      + ++  ++ MV  +A++G  N+A+    ++
Sbjct: 138 KLFDKMP-----EKDVVSWNTMVIAYAKSGFCNDALRFYREL 174


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 204/680 (30%), Positives = 338/680 (49%), Gaps = 143/680 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +  +  +++ G  +H   +K+G LNS + + + L+ MY +C     A  +FD +
Sbjct: 352 LGSVLSAIASLEALNYGLLVHAQAIKQG-LNSNVYVGSSLINMYAKCEKMEAAKKVFDAL 410

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             RN   WNAM+ G+ + G+  K ++LF+ M       ++F++  ++S  A A L  LE 
Sbjct: 411 DERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILS--ACACLECLEM 468

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+HS I+ +  +++  + ++LV++Y K                               
Sbjct: 469 GRQLHSFIIKHNFEYNLFVENTLVDMYAK------------------------------- 497

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG + +AR+ F+   +  +V WN++I GY+   ++ EA  +F +M  +G+  D  +LAS+
Sbjct: 498 CGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASI 557

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----------MPS--- 289
           LS C++L  LE G+QVH    K G+   +   S+L+D Y K G           MPS   
Sbjct: 558 LSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSV 617

Query: 290 ----------------DACKLFSELK---------------------------------- 299
                           +A  LF E++                                  
Sbjct: 618 VSMNAIIAGYAQNDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLI 677

Query: 300 -----VYDTILLN-TMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIE 352
                +YD   L  +++ +Y +  R  DA  +F      KS I W ++I G +QNG   E
Sbjct: 678 QKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEE 737

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL L+  M++ + R D+ + ASV+ AC+ ++SL  G  + + +  +GLDSD++  +++VD
Sbjct: 738 ALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVD 797

Query: 413 FYCKCG----------------------------------YDALALFNEMRNTGVKPTII 438
            Y KCG                                   +AL +F+EM++T ++P  +
Sbjct: 798 MYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDV 857

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TF  +L+AC H G V EG++ FD M   Y I P ++H +CM+DL  R G L EA   I++
Sbjct: 858 TFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDK 917

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           + FE +  +W+++L  C  HGD   GR+ AE++IEL+PEN+  Y+ LS+I+A SG W++ 
Sbjct: 918 LNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEV 977

Query: 559 SLIRDIMREKHVGKLPGCSW 578
           + +R  MREK + KLPGCSW
Sbjct: 978 NSVRRAMREKGLRKLPGCSW 997



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 170/628 (27%), Positives = 272/628 (43%), Gaps = 146/628 (23%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L SC     I +GKQ+H   +K G   ++      L+ MY +CG+  DA  +FD + 
Sbjct: 186 AIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSF-CEGSLIDMYSKCGSLVDARKIFDAVV 244

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFN-------------------------------- 96
             +  SW AMI G++++G  E++L++F                                 
Sbjct: 245 DPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACD 304

Query: 97  ---VMPQKNDFSWNMLISGFAK--ADLAALEYGKQI-HSHILVNGLDFDSVLGSSLVNL- 149
               MP  N  +WN++ISG  K   D+ A+++ K +  + +        SVL S++ +L 
Sbjct: 305 LFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVL-SAIASLE 363

Query: 150 ---YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
              YG      +  Q LN     + +  S+LI+ YA C KM  A++VFD   + + V+WN
Sbjct: 364 ALNYGLLVHAQAIKQGLN----SNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWN 419

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           +M+ GY  N   ++ + LF +MR  G   D  T  S+LSAC+ L  LE G+Q+H    K 
Sbjct: 420 AMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKH 479

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
               ++ V + L+D Y+K G                                +E+A+  F
Sbjct: 480 NFEYNLFVENTLVDMYAKCGA-------------------------------LEEARQQF 508

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             + N+  +SWN++IVG  Q     EA ++F  M    +  D+ SLAS++S CAN+ +LE
Sbjct: 509 EFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALE 568

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------------- 418
            GEQV   +   GL +     +SL+D Y KCG                            
Sbjct: 569 QGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYA 628

Query: 419 ----YDALALFNEMRNTGVKPTIITFTAILSACD-----------HCGLVKEG------- 456
                +A+ LF EM+N G+ P+ ITF ++L AC            HC + K G       
Sbjct: 629 QNDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDF 688

Query: 457 ------------QKWFDA--MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM--- 499
                       Q+  DA  +  ++        ++ ++    + GC  EA+ L ++M   
Sbjct: 689 LGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRN 748

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKV 527
               D   ++S+LR C      G GR +
Sbjct: 749 NARPDQATFASVLRACSILASLGDGRMI 776



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 145/597 (24%), Positives = 255/597 (42%), Gaps = 154/597 (25%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           RL Q+  T  +IH  + L   F  KG L S +      + +Y +CGN   A   F+++ +
Sbjct: 92  RLAQASRTSKTIH-AQTLKFGFGSKGRLGSAI------VDLYAKCGNVEFAAKAFNQLEK 144

Query: 70  RNCFSWNAMIEGFMKLGHKEK------SLQLFNVMPQKNDFSWNMLISGFAKADLAALEY 123
           R+  +WN+++  + + G  E+      SLQ   V P  N F++ +++S  A+  L  ++ 
Sbjct: 145 RDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSP--NQFTYAIVLSSCAR--LVDIDL 200

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H  ++  G +F+S                               FC  +LI  Y+ 
Sbjct: 201 GKQVHCGVIKMGFEFNS-------------------------------FCEGSLIDMYSK 229

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG + DAR++FD   D  +V W +MI+GY+      EAL +F  M++ G++ D     +V
Sbjct: 230 CGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTV 289

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVI---DDVIVASALLDTYSKRGMPSDACKLF----- 295
           ++AC  LG L+        AC + V     +V+  + ++  + KRG   +A   F     
Sbjct: 290 ITACVGLGRLD-------DACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWK 342

Query: 296 -----------------SELKVYDTILL-----------------NTMITVYSSCGRIED 321
                            + L+  +  LL                 +++I +Y+ C ++E 
Sbjct: 343 TGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEA 402

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           AK +F  +  ++L+ WN+M+ G +QNG   + + LF  M       D+F+  S++SACA 
Sbjct: 403 AKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACAC 462

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------------- 419
           +  LE+G Q+ + +     + +  +  +LVD Y KCG                       
Sbjct: 463 LECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAI 522

Query: 420 -----------DALALFNEMRNTGVKPTIITFTAILSACD-----------HCGLVKEGQ 457
                      +A  +F  M   G+ P  ++  +ILS C            HC LVK G 
Sbjct: 523 IVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSG- 581

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
                      +   +   S ++D++ + G +  A  +   MP  + V M ++I+ G
Sbjct: 582 -----------LQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSM-NAIIAG 626



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 203/427 (47%), Gaps = 72/427 (16%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           SA++  YA CG +  A + F++      + WNS++S Y       + +  F  ++  GV 
Sbjct: 120 SAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVS 179

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVG--------------------------- 267
            +  T A VLS+C+ L  ++ GKQVH    K+G                           
Sbjct: 180 PNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKI 239

Query: 268 ---VID-DVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRI 319
              V+D D +  +A++  Y + G+P +A K+F +++    V D +   T+IT     GR+
Sbjct: 240 FDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRL 299

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           +DA  +F  MPN ++++WN MI G  + G  IEA+D F NM K  ++  + +L SV+SA 
Sbjct: 300 DDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAI 359

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDAL--------- 422
           A++ +L  G  V A+    GL+S+  + +SL++ Y KC         +DAL         
Sbjct: 360 ASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWN 419

Query: 423 ----------------ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKW 465
                            LF+EMR  G  P   T+T+ILSAC     ++ G++     +K 
Sbjct: 420 AMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKH 479

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
            +  +  +E+   +VD++A+ G L EA    E +    +V  W++I+ G V   D+    
Sbjct: 480 NFEYNLFVEN--TLVDMYAKCGALEEARQQFEFIRNRDNVS-WNAIIVGYVQEEDEDEAF 536

Query: 526 KVAERMI 532
            +  RMI
Sbjct: 537 NMFRRMI 543


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 185/601 (30%), Positives = 312/601 (51%), Gaps = 98/601 (16%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C  +  ++ G+ LH + +K G++NS   + + LL MY + G   +   +F EMP RN 
Sbjct: 124 KACGLNSDVNYGELLHGYAVKTGLVNSVF-VGSALLDMYTKNGKIFEGRRVFHEMPMRNV 182

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDF-SWNMLISGFAKADLAALEYGKQIHSH 130
            SW A+I G ++ G+ +++L  F+ M   + ++ S+   I+  A AD  AL YG++IH+ 
Sbjct: 183 VSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQ 242

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +  G D  S + ++L  +Y KC                               GK+   
Sbjct: 243 AMKKGFDVSSFVANTLATMYNKC-------------------------------GKLEYG 271

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
             +F++ +    V W ++I+  +   ++  A+  F +MR + V  +  T A+V+S C++L
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             +E G+Q+H     +G+   + V                                N+++
Sbjct: 332 ARIEWGEQLHALILHLGLAASLSVE-------------------------------NSIM 360

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
           T+Y+ CG++  +  IF  M  + ++SW+++I G SQ G   EA +L   M     +  +F
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEF 420

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDA- 421
           +LASV+SAC N++ LE G+Q+ A V  IGL+   ++ ++L++ YCKCG        +DA 
Sbjct: 421 ALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAA 480

Query: 422 ------------------------LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                   + LF ++   G++P  +TF  +LSAC H GLV  G 
Sbjct: 481 ENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGF 540

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           ++F+AM  +Y I P  EHY CM+DL  RAG L++A ++IE MPF  D  +WS++LR C  
Sbjct: 541 RYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRV 600

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           HGD   GR+ AER+++L+P  A  +I L++I+A+ G+W +++ IR +M+ K V K PG S
Sbjct: 601 HGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWS 660

Query: 578 W 578
           W
Sbjct: 661 W 661



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 236/514 (45%), Gaps = 93/514 (18%)

Query: 3   TRIDY----LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +R++Y     A  L++C    +++ G+++H   +KKG   S+  +AN L  MY +CG   
Sbjct: 211 SRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSF-VANTLATMYNKCGKLE 269

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFA 114
             L LF++M  R+  SW  +I   +++G +E ++Q F  M +     N++++  +ISG  
Sbjct: 270 YGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGC- 328

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            A+LA +E+G+Q+H+ IL  GL     + +S++ +Y KCG   S++ + + M   D    
Sbjct: 329 -ANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSW 387

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           S +I+GY+  G +                               +EA  L   MR  G  
Sbjct: 388 STIIAGYSQGGHV-------------------------------SEAFELLSWMRMEGPK 416

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
                LASVLSAC ++  LEHGKQ+H +   +G+    +V SAL++ Y K G   +A + 
Sbjct: 417 PTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASR- 475

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                         IF    N  ++SW +MI G +++G   E +
Sbjct: 476 ------------------------------IFDAAENDDIVSWTAMINGYAEHGYSREVI 505

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS----- 409
           DLF  + ++ LR D  +   V+SAC++   ++LG + F       +     IS S     
Sbjct: 506 DLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFN-----AMSKKYQISPSKEHYG 560

Query: 410 -LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
            ++D  C+ G   DA  +   M         + ++ +L AC   G V+ G++  + +   
Sbjct: 561 CMIDLLCRAGRLSDAEHMIEAM---PFHRDDVVWSTLLRACRVHGDVERGRRTAERI--- 614

Query: 467 YHIDPEIE-HYSCMVDLFARAGCLNEAVNLIEQM 499
             ++P     +  + +++A  G   EA ++ + M
Sbjct: 615 LQLEPNCAGTHITLANIYASKGKWREAADIRKLM 648



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 166/364 (45%), Gaps = 67/364 (18%)

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASV 243
           G + +ARR+FD+ +    + W ++ISGY++ N+ +EALLLF  MR  +G+  D   L+  
Sbjct: 63  GHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLA 122

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
             AC     + +G+ +HG+A K G+++ V V SALLD Y+K G                 
Sbjct: 123 HKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG----------------- 165

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                         +I + + +F  MP ++++SW ++I GL + G   EAL  F  M + 
Sbjct: 166 --------------KIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRS 211

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---YD 420
            +  D ++ A  + ACA+  +L  G ++ A+    G D    ++ +L   Y KCG   Y 
Sbjct: 212 RVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYG 271

Query: 421 ------------------------------ALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         A+  F  MR + V P   TF A++S C + 
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
             ++ G++   A+     +   +   + ++ ++A+ G L  +  +  +M    D+  WS+
Sbjct: 332 ARIEWGEQ-LHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMT-RRDIVSWST 389

Query: 511 ILRG 514
           I+ G
Sbjct: 390 IIAG 393



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 22/243 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C     +  GKQLH + L  G L  T  + + L+ MY +CG+  +A  +FD  
Sbjct: 422 LASVLSACGNMAILEHGKQLHAYVLSIG-LEHTAMVLSALINMYCKCGSIEEASRIFDAA 480

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
              +  SW AMI G+ + G+  + + LF  +P    + +  ++  ++S  + A L  L +
Sbjct: 481 ENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGF 540

Query: 124 GKQIHSHILVNGLDFDSVLGSS------LVNLYGKCGDFNSANQVLNMMK-EPDDFCLSA 176
                     N +     +  S      +++L  + G  + A  ++  M    DD   S 
Sbjct: 541 R-------YFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWST 593

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS---GYISNNEDTEALLLFHKMRRNGV 233
           L+      G +   RR  +R          + I+    Y S  +  EA  +   M+  GV
Sbjct: 594 LLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGV 653

Query: 234 LED 236
           +++
Sbjct: 654 IKE 656


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 196/608 (32%), Positives = 315/608 (51%), Gaps = 77/608 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   S+  G+++H      G L+S   +AN L+ MY R G+  DA  +F  +  R
Sbjct: 116 VLGACS---SLAQGREIHNRVFYSG-LDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKADLAALEYGKQI 127
           +  SWNA+I    + G    +L++F  M    + N  ++  +ISGF+  ++  L  G++I
Sbjct: 172 DETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEV--LPEGRKI 229

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H+ I+ NG D D V+ ++L+N+YGK                               CG  
Sbjct: 230 HAEIVANGFDTDLVVATALINMYGK-------------------------------CGSS 258

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           ++AR VFD+      V WN MI  Y+ N +  EAL L+ K+   G     +T  S+L AC
Sbjct: 259 HEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGAC 318

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           SS+  L  G+ VH H  + G+  +V VA+AL++ Y+K G   +A K+F+ +K  D +  +
Sbjct: 319 SSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWS 378

Query: 308 TMITVYSSCGRIEDAKH---IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KL 363
           T+I  Y+S G  +DA+    +F  + ++  ISWN+MI    QNG  + A+ +F  M    
Sbjct: 379 TLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAA 438

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            L+ D  +  +V+ ACA++  L   + + A+++   L+S+ +++ +L++ Y +CG     
Sbjct: 439 GLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEA 498

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF EM   GVKP  +T+T+IL  C H 
Sbjct: 499 ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHG 558

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G +++G ++F  M   + + P  +H++ MVDL  R+G L +A  L+E MPFE D   W +
Sbjct: 559 GSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMT 618

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
            L  C  HG   LG   AER+ ELDP +   YI +S+I+A  G WEK + +R  M E+ +
Sbjct: 619 FLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGL 678

Query: 571 GKLPGCSW 578
            KLPG S+
Sbjct: 679 KKLPGLSF 686



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 181/425 (42%), Gaps = 79/425 (18%)

Query: 153 CGDFNSANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRT--TDTSSVMWN 206
           CGD      +   ++    E D    +ALIS Y  C  + DAR VF+       + V WN
Sbjct: 20  CGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWN 79

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           +MI+ Y  N   TEAL+L+ +M   G+  D  T  SVL ACSSL     G+++H      
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYS 136

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G+     +A+AL+  Y++ G   DA ++F  L+  D    N +I  +S  G    A  IF
Sbjct: 137 GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIF 196

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
           + M                                K D++ +  +  +VIS  +    L 
Sbjct: 197 KEM--------------------------------KCDVKPNSTTYINVISGFSTPEVLP 224

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------------- 418
            G ++ A +   G D+D +++T+L++ Y KCG                            
Sbjct: 225 EGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 419 -----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
                ++AL L+ ++   G K T  TF +IL AC     + +G +   +   +  +D E+
Sbjct: 285 LNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEV 343

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG---DKGLGRKVAER 530
              + +V+++A+ G L EA  +   M    D   WS+++    ++G   D    RKV +R
Sbjct: 344 AVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402

Query: 531 MIELD 535
           +   D
Sbjct: 403 LGSRD 407


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 171/500 (34%), Positives = 278/500 (55%), Gaps = 35/500 (7%)

Query: 116 ADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            D  +L+ GK IH H+ + G    +++L + L+ +Y KCG    A +V + M   + +  
Sbjct: 57  GDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSW 116

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + ++SG+   G +  AR VFD   +   V WN+M+ GY  +    EAL  F ++RR+G+ 
Sbjct: 117 NNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIK 176

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  + A +L+AC     L+  +Q HG     G + +V+++ +++D Y+K G    A + 
Sbjct: 177 FNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRC 236

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F E+ V D  +  T+I+ Y+  G +E A  +FR MP K+ +SW ++I G  + GS   AL
Sbjct: 237 FDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLAL 296

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           DLF  M  + ++ ++F+ +S + A A+I+SL  G+Q+   +    +  + I+++SL+D Y
Sbjct: 297 DLFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMY 356

Query: 415 CKCG------------YD----------------------ALALFNEMRNTGVKPTIITF 440
            K G            YD                      AL + ++M    V P   T 
Sbjct: 357 SKSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTL 416

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             IL+AC H GLV+EG +WF++M  Q+ I P+ EHY+C++DL  RAGC  E ++ IE+MP
Sbjct: 417 VVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMP 476

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
           FE D  +W++IL  C  HG++ LG+K AE +I+LDPE++  YI LSSI+A  G+WE    
Sbjct: 477 FEPDKHIWNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEK 536

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R IM+++ V K    SW +
Sbjct: 537 LRGIMKKRRVNKEKAVSWIE 556



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/502 (28%), Positives = 233/502 (46%), Gaps = 70/502 (13%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D LA LLQ C    S+  GK +H H    G       ++N L+ MYM+CG P DA  +FD
Sbjct: 47  DLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFD 106

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---------- 115
           +M  RN +SWN M+ GF+K G   ++  +F+ MP+++  SWN ++ G+A+          
Sbjct: 107 QMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWF 166

Query: 116 -----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 152
                                       L+  +Q H  +LV G   + VL  S+++ Y K
Sbjct: 167 FKELRRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAK 226

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
           CG   SA +  + M   D    + LISGYA  G M  A ++F    + + V W ++I+GY
Sbjct: 227 CGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGY 286

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
           +       AL LF KM    V  +  T +S L A +S+  L HGKQ+HG+  +  V  + 
Sbjct: 287 VRQGSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNA 346

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
           IV S+L+D YSK                                G +E ++ +FR   +K
Sbjct: 347 IVTSSLIDMYSK-------------------------------SGSLEASERVFRICYDK 375

Query: 333 S-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
              + WN+MI  L+Q+G   +AL +  +M K  +  ++ +L  +++AC++   +E G + 
Sbjct: 376 QDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEEGVRW 435

Query: 392 FARVTII-GLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
           F  +T+  G+  DQ     L+D   + G     L +++     +P    + AIL  C   
Sbjct: 436 FESMTVQHGIVPDQEHYACLIDLLGRAGCFK-ELMSKIEEMPFEPDKHIWNAILGVCRIH 494

Query: 451 GLVKEGQKWFDAMKWQYHIDPE 472
           G  + G+K  + +     +DPE
Sbjct: 495 GNEELGKKAAEEL---IKLDPE 513



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 181/371 (48%), Gaps = 16/371 (4%)

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
            S++S + +  E ++A+     + + G+      LAS+L  C     L+ GK +H H   
Sbjct: 15  RSLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKI 74

Query: 266 VGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
            G    + ++++ L+  Y K G P DACK+F ++ + +    N M++ +   G +  A+ 
Sbjct: 75  TGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARV 134

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
           +F +MP + ++SWN+M++G +Q+G+  EAL  F  + +  ++ ++FS A +++AC     
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQ 194

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTA 442
           L+L +Q   +V + G  S+ ++S S++D Y KCG    A   F+EM        I  +T 
Sbjct: 195 LQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEM----TVKDIHIWTT 250

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ---M 499
           ++S     G ++   K F  M  +  +      ++ ++  + R G  + A++L  +   M
Sbjct: 251 LISGYAKLGDMEAADKLFREMPEKNPVS-----WTALIAGYVRQGSGDLALDLFRKMIAM 305

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKS 558
             + +   +SS L    +      G+++   MI  +   NA     L  +++ SG  E S
Sbjct: 306 RVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEAS 365

Query: 559 SLIRDIMREKH 569
             +  I  +K 
Sbjct: 366 ERVFRICYDKQ 376


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 178/490 (36%), Positives = 259/490 (52%), Gaps = 62/490 (12%)

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           +E  +QIH  +L  GL  D +  S L+                        FC S     
Sbjct: 31  MEELRQIHGQMLKTGLILDEIPASKLLA-----------------------FCASP---- 63

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
             N G +  AR VFDR    ++ MWN+MI GY ++ E  EALLL+H M  + V  +A T 
Sbjct: 64  --NSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
             +L ACSS+  LE  +Q+H H  K+G   ++   ++LL+ YSK G    A  LF ++  
Sbjct: 122 PFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            DT+  N+MI  Y+ CG IE A  IF  MP +++ISW SMI G    G P EAL+LF  M
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
               +++D  +L S + ACA++  L+ G+ + A +    ++ D I+   L+D Y KC   
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 301

Query: 418 ------------------------------GYDALALFNEMRNTGVKPTIITFTAILSAC 447
                                         G +AL  F +M+  GV+P  +TFT IL+AC
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV E +  F++M+  +   P IEHY CMVDL  RAG L EA  LIE MP + +  +
Sbjct: 362 SHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAI 421

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L  C  HG+  LG+++ + +I++DP +   YI L+SI A +GEW +++ +R  M+E
Sbjct: 422 WGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKE 481

Query: 568 KHVGKLPGCS 577
           + V KLPGCS
Sbjct: 482 QGVSKLPGCS 491



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 146/367 (39%), Gaps = 107/367 (29%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           +A+    +L  CS++   E  +Q+HG   K G+I D I AS LL                
Sbjct: 17  NAAQTLHLLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLL---------------- 57

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                              + G +  A+ +F  +   +   WN+MI G S +  P EAL 
Sbjct: 58  -------------AFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALL 104

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS------------- 402
           L+ +M    +  + ++   ++ AC+++S+LE  +Q+ A +  +G  S             
Sbjct: 105 LYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYS 164

Query: 403 ------------------DQIISTSLVDFYCKCGYDALA--LFNEM-------------- 428
                             D +   S++D Y KCG   +A  +FN M              
Sbjct: 165 KSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISG 224

Query: 429 -----------------RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM--KWQYHI 469
                            +  G+K   +   + L AC   G++ +G KW  A   K +  I
Sbjct: 225 CVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG-KWIHAYIKKHEIEI 283

Query: 470 DPEIEHYSC-MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
           DP +    C ++D++A+ G L EA+ +  +M  E  V +W++++ G   HG    GR+  
Sbjct: 284 DPIL---GCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHGR---GREAL 336

Query: 529 ERMIELD 535
           E  +++ 
Sbjct: 337 EWFMKMQ 343


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 202/608 (33%), Positives = 317/608 (52%), Gaps = 79/608 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFDEMP 68
           LL +C +  ++   KQ+H   +K G+ N+   ++ +L++       GN + ALLLF+ + 
Sbjct: 38  LLSTCKSFQNL---KQIHSQIIKTGLHNTQFALS-KLIEFCAISPFGNLSYALLLFESIE 93

Query: 69  RRNCFSWNAMIEG----FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
           + N F WN MI G       +G  +  +++     + N +++  L+   AK  + A + G
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK--VGATQEG 151

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQIH H+L  GL+ D  + +SL+N+Y + G+   A  V +     D    +ALI+GY   
Sbjct: 152 KQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLR 211

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G ++DARR+F+      +V WN+MI+GY  +    EAL  F +M+R  V  + ST+ +VL
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SAC+  G LE G  V         I+D  + S L                          
Sbjct: 272 SACAQSGSLELGNWVRSW------IEDHGLGSNLR------------------------- 300

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
           L+N +I +YS CG ++ A+ +F  +  K +ISWN MI G S   S  EAL LF  M + +
Sbjct: 301 LVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN 360

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQIISTSLVDFYCKCGYD-- 420
           +  +  +  S++ ACA + +L+LG+ + A +    +GL ++  + TSL+D Y KCG    
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGL-TNTSLWTSLIDMYAKCGNIEA 419

Query: 421 -------------------------------ALALFNEMRNTGVKPTIITFTAILSACDH 449
                                          AL LF +MR+ G +P  ITF  +LSAC H
Sbjct: 420 AKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV+ G++ F +M   Y I P+++HY CM+DL  RAG  +EA  L++ M  + D  +W 
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWG 539

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           S+L  C  HG+  LG   A+ + EL+PEN  AY+ LS+I+AT+G W+  + IR  + +K 
Sbjct: 540 SLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKG 599

Query: 570 VGKLPGCS 577
           + K+PGCS
Sbjct: 600 MKKVPGCS 607


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 198/625 (31%), Positives = 295/625 (47%), Gaps = 98/625 (15%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + V   +H   LK  +      + N LL  Y + G    A  +FDEMP  N F+ NA++ 
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA------------------------KA 116
                       +LF  MP+++  S+N LI+GF+                        + 
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRI 147

Query: 117 DLAAL----------EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
            L+A+            G  +H  +L  G    + +GS LV++Y K G    A +V   M
Sbjct: 148 TLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           +       + LI+G   C  + DA+ +F    D  S+ W +M++G   N    EAL +F 
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
           +MR  GV  D  T  S+L+AC +L  LE GKQ+H +  +    D+V V SAL+D YSK  
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSK-- 325

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
                                        C  I  A+ +FR M  +++ISW +MIVG  Q
Sbjct: 326 -----------------------------CRSIRLAEAVFRRMTCRNIISWTAMIVGYGQ 356

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           N    EA+  F  M    ++ D F+L SVIS+CAN++SLE G Q      + GL     +
Sbjct: 357 NACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 407 STSLVDFYCKCG--YDALALFNEMR-------------------------------NTGV 433
           S +LV  Y KCG   DA  LF+EM                                  G+
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGL 476

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           KP  +TF  +LSAC   GLV++G  +FD+M+  + I P  +HY+CM+DL++R+G   EA 
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAE 536

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             I+QMP   D   W+++L  C   G+  +G+  AE ++E DP+N  +Y+ L S+ A  G
Sbjct: 537 EFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKG 596

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSW 578
           +W + + +R  MR++ V K PGCSW
Sbjct: 597 QWTEVAHLRRGMRDRQVKKEPGCSW 621



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G++   + ++N L+ +Y +CG+  DA  LFDEM
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMR-YITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--AL 121
              +  SW A++ G+ + G  ++++ LF  M     + +  ++  ++S  ++A L     
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGC 500

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALIS 179
           +Y   +     +  +D      + +++LY + G F  A + +  M   PD F  + L+S
Sbjct: 501 DYFDSMQKDHGIVPIDDHY---TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 198/625 (31%), Positives = 295/625 (47%), Gaps = 98/625 (15%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + V   +H   LK  +      + N LL  Y + G    A  +FDEMP  N F+ NA++ 
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA------------------------KA 116
                       +LF  MP+++  S+N LI+GF+                        + 
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRI 147

Query: 117 DLAAL----------EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
            L+A+            G  +H  +L  G    + +GS LV++Y K G    A +V   M
Sbjct: 148 TLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           +       + LI+G   C  + DA+ +F    D  S+ W +M++G   N    EAL +F 
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
           +MR  GV  D  T  S+L+AC +L  LE GKQ+H +  +    D+V V SAL+D YSK  
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSK-- 325

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
                                        C  I  A+ +FR M  +++ISW +MIVG  Q
Sbjct: 326 -----------------------------CRSIRLAEAVFRRMTCRNIISWTAMIVGYGQ 356

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           N    EA+  F  M    ++ D F+L SVIS+CAN++SLE G Q      + GL     +
Sbjct: 357 NACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 407 STSLVDFYCKCG--YDALALFNEMR-------------------------------NTGV 433
           S +LV  Y KCG   DA  LF+EM                                  G+
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGL 476

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           KP  +TF  +LSAC   GLV++G  +FD+M+  + I P  +HY+CM+DL++R+G   EA 
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAE 536

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             I+QMP   D   W+++L  C   G+  +G+  AE ++E DP+N  +Y+ L S+ A  G
Sbjct: 537 EFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKG 596

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSW 578
           +W + + +R  MR++ V K PGCSW
Sbjct: 597 QWTEVAHLRRGMRDRQVKKEPGCSW 621



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G++   + ++N L+ +Y +CG+  DA  LFDEM
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMR-YITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--AL 121
              +  SW A++ G+ + G  ++++ LF  M     + +  ++  ++S  ++A L     
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGC 500

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALIS 179
           +Y   +     +  +D      + +++LY + G F  A + +  M   PD F  + L+S
Sbjct: 501 DYFDSMQKDHGIVPIDDHY---TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/570 (31%), Positives = 297/570 (52%), Gaps = 43/570 (7%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFS 105
           M+ + G   DA  +F EMP R+  SW  M+ G  + G   ++++    M         F+
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 106 WNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 165
              ++S  A     A+  G+++HS ++  GL     + +S++N+YGKCGD  +A  V   
Sbjct: 61  LTNVLSSCAVTQAGAV--GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 118

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
           M        +A++S   + G+M+ A  +F+   D S V WN+MI+GY  N  D +AL LF
Sbjct: 119 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178

Query: 226 HKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
            +M   + +  D  T+ SVLSAC++LG +  GKQVH +  +  +  +  V +AL+ TY+K
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 238

Query: 285 RGMPSDACKLFSELKVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
            G   +A ++  +    D   I    ++  Y   G +E A+ +F  M N+ +++W +MIV
Sbjct: 239 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 298

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G  QNG   EA+DLF +M       + ++LA+V+S CA+++ L+ G+Q+  R     L+ 
Sbjct: 299 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQ 358

Query: 403 DQIISTSLVDFYCKC----------------------------------GYDALALFNEM 428
              +S +++  Y +                                   G +A+ LF EM
Sbjct: 359 SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 418

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488
              GV+P  IT+  +LSAC H G V EG++++D +K ++ I PE+ HY+CMVDL ARAG 
Sbjct: 419 LRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGL 478

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
            +EA   I +MP E D   W S+L  C  H +  L    AE+++ +DP N+ AY  ++++
Sbjct: 479 FSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANV 538

Query: 549 FATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           ++  G W  ++ I    +EK V K  G SW
Sbjct: 539 YSACGRWSDAARIWKARKEKAVRKETGFSW 568



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 229/482 (47%), Gaps = 79/482 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    +  VG+++H   +K G L S +P+AN +L MY +CG+   A  +F+ M
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLG-LGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-------------- 113
           P R+  SWNAM+     LG  + +  LF  MP ++  SWN +I+G+              
Sbjct: 120 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 179

Query: 114 --------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                               A A+L  +  GKQ+H++IL   + ++S + ++L++ Y K 
Sbjct: 180 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 239

Query: 154 GDFNSANQVLNMMKEPD--DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           G   +A ++++   E D      +AL+ GY   G M  AR +F    +   V W +MI G
Sbjct: 240 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 299

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           Y  N  + EA+ LF  M   G   ++ TLA+VLS C+SL  L++GKQ+H           
Sbjct: 300 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIH----------- 348

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF-RTMP 330
                               C+    L    + + N +IT+Y+  G    A+ +F +   
Sbjct: 349 --------------------CRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCW 388

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
            K  I+W SMIV L+Q+G   EA+ LF  M +  +  D+ +   V+SAC++   +  G++
Sbjct: 389 RKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKR 448

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCGYDALA-LFNE----MRNTGVKPTIITFTAILS 445
            + ++      ++  I+  +  + C     A A LF+E    +R   V+P  I + ++LS
Sbjct: 449 YYDQI-----KNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLS 503

Query: 446 AC 447
           AC
Sbjct: 504 AC 505


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 195/608 (32%), Positives = 314/608 (51%), Gaps = 77/608 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   S+  G+++H      G L+S   +AN L+ MY R G+  DA  +F  +  R
Sbjct: 116 VLGACS---SLAQGREIHNRVFYSG-LDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKADLAALEYGKQI 127
           +  SWNA+I    + G    +L++F  M    + N  ++  +ISGF+  ++  L  G++I
Sbjct: 172 DETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEV--LPEGRKI 229

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H+ I+ NG D D V+ ++L+N+YGK                               CG  
Sbjct: 230 HAEIVANGFDSDLVVATALINMYGK-------------------------------CGSS 258

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           ++AR VFD+      V WN MI  Y+ N +  EAL L+ K+   G     +T  S+L AC
Sbjct: 259 HEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGAC 318

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           SS+  L  G+ VH H  + G+  +V VA+AL++ Y+K G   +A K+F+ +K  D +  +
Sbjct: 319 SSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWS 378

Query: 308 TMITVYSSCGRIEDAKH---IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KL 363
           T+I  Y+S G  +DA+    +F  + ++  I WN+MI    QNG  + A+ +F  M    
Sbjct: 379 TLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAA 438

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            L+ D  +  +V+ ACA++  L   + + A+++   L+S+ +++ +L++ Y +CG     
Sbjct: 439 GLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEA 498

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF EM   GVKP  +T+T+IL  C H 
Sbjct: 499 ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHG 558

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G +++G ++F  M   + + P  +H++ MVDL  R+G L +A  L+E MPFE D   W +
Sbjct: 559 GSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMT 618

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
            L  C  HG   LG   AER+ ELDP +   YI +S+I+A  G WEK + +R  M E+ +
Sbjct: 619 FLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGL 678

Query: 571 GKLPGCSW 578
            KLPG S+
Sbjct: 679 KKLPGLSF 686



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 181/425 (42%), Gaps = 79/425 (18%)

Query: 153 CGDFNSANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRT--TDTSSVMWN 206
           CGD      +   ++    E D    +ALIS Y  C  + DAR VF+       + V WN
Sbjct: 20  CGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWN 79

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           +MI+ Y  N   TEAL+L+ +M   G+  D  T  SVL ACSSL     G+++H      
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYS 136

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G+     +A+AL+  Y++ G   DA ++F  L+  D    N +I  +S  G    A  IF
Sbjct: 137 GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIF 196

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
           + M                                K D++ +  +  +VIS  +    L 
Sbjct: 197 KEM--------------------------------KCDMKPNSTTYINVISGFSTPEVLP 224

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------------- 418
            G ++ A +   G DSD +++T+L++ Y KCG                            
Sbjct: 225 EGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 419 -----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
                ++AL L+ ++   G K T  TF +IL AC     + +G +   +   +  +D E+
Sbjct: 285 QNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEV 343

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG---DKGLGRKVAER 530
              + +V+++A+ G L EA  +   M    D   WS+++    ++G   D    RKV +R
Sbjct: 344 AVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402

Query: 531 MIELD 535
           +   D
Sbjct: 403 LGSRD 407


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 184/601 (30%), Positives = 310/601 (51%), Gaps = 98/601 (16%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C  +  ++ G+ LH + +K G++NS   + + LL MY + G   +   +F EMP RN 
Sbjct: 124 KACGLNSDVNYGELLHGYAVKTGLVNSVF-VGSALLDMYTKNGKIFEGRRVFHEMPMRNV 182

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDF-SWNMLISGFAKADLAALEYGKQIHSH 130
            SW A+I G ++ G+ +++L  F+ M   + ++ S+   I+  A AD  AL YG++IH+ 
Sbjct: 183 VSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQ 242

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +  G D  S + ++L  +Y KC                               GK+   
Sbjct: 243 AMKKGFDVSSFVANTLATMYNKC-------------------------------GKLEYG 271

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
             +F++ +    V W ++I+  +   ++  A+  F +MR + V  +  T A+V+S C++L
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             +E G+Q+H     +G+   + V                                N+++
Sbjct: 332 ARIEWGEQLHALILHLGLAASLSVE-------------------------------NSIM 360

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
           T+Y+ CG++  +  IF  M  + ++SW+++I G  Q G   EA +L   M     +  +F
Sbjct: 361 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEF 420

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDA- 421
           +LASV+SAC N++ LE G+Q+ A V  IGL+   ++ ++L++ YCKCG        +DA 
Sbjct: 421 ALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAA 480

Query: 422 ------------------------LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                   + LF ++   G++P  +TF  +LSAC H GLV  G 
Sbjct: 481 ENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGF 540

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
            +F+AM  +Y I P  EHY CM+DL  RAG L++A ++IE MPF  D  +WS++LR C  
Sbjct: 541 HYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRV 600

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           HGD   GR+ AER+++L+P  A  +I L++I+A+ G+W +++ IR +M+ K V K PG S
Sbjct: 601 HGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWS 660

Query: 578 W 578
           W
Sbjct: 661 W 661



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 234/514 (45%), Gaps = 93/514 (18%)

Query: 3   TRIDY----LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +R++Y     A  L++C    +++ G+++H   +KKG   S+  +AN L  MY +CG   
Sbjct: 211 SRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSF-VANTLATMYNKCGKLE 269

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFA 114
             L LF++M  R+  SW  +I   +++G +E ++Q F  M +     N++++  +ISG  
Sbjct: 270 YGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGC- 328

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            A+LA +E+G+Q+H+ IL  GL     + +S++ +Y KCG   S++ + + M   D    
Sbjct: 329 -ANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSW 387

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           S +I+GY   G +                               +EA  L   MR  G  
Sbjct: 388 STIIAGYXQGGHV-------------------------------SEAFELLSWMRMEGPK 416

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
                LASVLSAC ++  LEHGKQ+H +   +G+    +V SAL++ Y K G   +A + 
Sbjct: 417 PTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASR- 475

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                         IF    N  ++SW +MI G +++G   E +
Sbjct: 476 ------------------------------IFDAAENDDIVSWTAMINGYAEHGYSREVI 505

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS----- 409
           DLF  + ++ LR D  +   V+SAC++   ++LG   F       +     IS S     
Sbjct: 506 DLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFN-----AMSKKYQISPSKEHYG 560

Query: 410 -LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
            ++D  C+ G   DA  +   M         + ++ +L AC   G V+ G++  + +   
Sbjct: 561 CMIDLLCRAGRLSDAEHMIEAM---PFHRDDVVWSTLLRACRVHGDVERGRRTAERI--- 614

Query: 467 YHIDPEIE-HYSCMVDLFARAGCLNEAVNLIEQM 499
             ++P     +  + +++A  G   EA ++ + M
Sbjct: 615 LQLEPNCAGTHITLANIYASKGKWREAADIRKLM 648



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 167/369 (45%), Gaps = 67/369 (18%)

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASV 243
           G + +ARR+FD+ +    + W ++ISGY++ N+ +EALLLF  MR  +G+  D   L+  
Sbjct: 63  GHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLA 122

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
             AC     + +G+ +HG+A K G+++ V V SALLD Y+K G                 
Sbjct: 123 HKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG----------------- 165

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                         +I + + +F  MP ++++SW ++I GL + G   EAL  F  M + 
Sbjct: 166 --------------KIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRS 211

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---YD 420
            +  D ++ A  + ACA+  +L  G ++ A+    G D    ++ +L   Y KCG   Y 
Sbjct: 212 RVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYG 271

Query: 421 ------------------------------ALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         A+  F  MR + V P   TF A++S C + 
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
             ++ G++   A+     +   +   + ++ ++A+ G L  +  +  +M    D+  WS+
Sbjct: 332 ARIEWGEQ-LHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMT-RRDIVSWST 389

Query: 511 ILRGCVAHG 519
           I+ G    G
Sbjct: 390 IIAGYXQGG 398


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/490 (36%), Positives = 258/490 (52%), Gaps = 62/490 (12%)

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           +E  +QIH  +L  GL  D +  S L+                        FC S     
Sbjct: 31  MEELRQIHGQMLKTGLILDEIPASKLLA-----------------------FCASP---- 63

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
             N G +  AR VFDR    ++ MWN+MI GY ++ E  EALLL+H M  + V  +A T 
Sbjct: 64  --NSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
             +L ACSS+   E  +Q+H H  K+G   ++   ++LL+ YSK G    A  LF ++  
Sbjct: 122 PFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            DT+  N+MI  Y+ CG IE A  IF  MP +++ISW SMI G    G P EAL+LF  M
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
               +++D  +L S + ACA++  L+ G+ + A +    ++ D I+   L+D Y KC   
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 301

Query: 418 ------------------------------GYDALALFNEMRNTGVKPTIITFTAILSAC 447
                                         G +AL  F +M+  GV+P  +TFT IL+AC
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV E +  F++M+  +   P IEHY CMVDL  RAG L EA  LIE MP + +  +
Sbjct: 362 SHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAI 421

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L  C  HG+  LG+++ + +I++DP +   YI L+SI A +GEW +++ +R  M+E
Sbjct: 422 WGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKE 481

Query: 568 KHVGKLPGCS 577
           + V KLPGCS
Sbjct: 482 QGVSKLPGCS 491



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 145/367 (39%), Gaps = 107/367 (29%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           +A+    +L  CS++   E  +Q+HG   K G+I D I AS LL                
Sbjct: 17  NAAQTLHLLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLL---------------- 57

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                              + G +  A+ +F  +   +   WN+MI G S +  P EAL 
Sbjct: 58  -------------AFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALL 104

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS------------- 402
           L+ +M    +  + ++   ++ AC+++S+ E  +Q+ A +  +G  S             
Sbjct: 105 LYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYS 164

Query: 403 ------------------DQIISTSLVDFYCKCGYDALA--LFNEM-------------- 428
                             D +   S++D Y KCG   +A  +FN M              
Sbjct: 165 KSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISG 224

Query: 429 -----------------RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM--KWQYHI 469
                            +  G+K   +   + L AC   G++ +G KW  A   K +  I
Sbjct: 225 CVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG-KWIHAYIKKHEIEI 283

Query: 470 DPEIEHYSC-MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
           DP +    C ++D++A+ G L EA+ +  +M  E  V +W++++ G   HG    GR+  
Sbjct: 284 DPIL---GCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHGR---GREAL 336

Query: 529 ERMIELD 535
           E  +++ 
Sbjct: 337 EWFMKMQ 343


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 183/579 (31%), Positives = 303/579 (52%), Gaps = 48/579 (8%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           G+   +    N ++  Y+       A  +F++MP R+  SWN M+ G++K G+   +  L
Sbjct: 85  GMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARAL 144

Query: 95  FNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
           FN MP+K+  SWN ++SGFA+     +E  ++I   +LV     + +  + L++ Y + G
Sbjct: 145 FNQMPEKDVVSWNAMLSGFAQNGF--VEEARKIFDQMLVK----NEISWNGLLSAYVQNG 198

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
               A ++ +   + +    + L+ GY    +++DAR +FDR      + WN MI+GY  
Sbjct: 199 RIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQ 258

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N   +EA  LF ++     + D     +++S     G L+   ++     +     + + 
Sbjct: 259 NGLLSEARRLFEEL----PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVS 310

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            +A++  Y +      A +LF ++   +T   NTM+T Y+ CG I+ AK +F  MP +  
Sbjct: 311 WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDC 370

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
           ISW +MI G +Q+G   EAL LF  M +    +++ +LA  +S+CA I++LELG+Q+  R
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430

Query: 395 VTIIGLDSDQIISTSLVDFYCKCG---------------------------------YDA 421
           +   G  +  I   +L+  Y KCG                                  +A
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           LALF  M+ T +KP  +T   +LSAC H GLV +G ++F++M   Y I    +HY+CM+D
Sbjct: 491 LALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMID 549

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
           L  RAG L+EA+NL++ MPF  D   W ++L     HGD  LG K AE++ E++P+N+  
Sbjct: 550 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGM 609

Query: 542 YIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           Y+ LS+++A SG W +   +R  MR+K V K+PG SW +
Sbjct: 610 YVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVE 648



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 205/426 (48%), Gaps = 36/426 (8%)

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
           +D D V  +  ++ Y + G   SA  V N M+       +A+ISGY +  K + AR+VF+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           +  D   + WN M+SGY+ N   + A  LF++M      +D  +  ++LS  +  GF+E 
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPE----KDVVSWNAMLSGFAQNGFVEE 171

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
            +++        ++ + I  + LL  Y + G   DA +LF     ++ +  N ++  Y  
Sbjct: 172 ARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
             R++DA+ +F  MP +  ISWN MI G +QNG   EA  LF    +L +R D F+  ++
Sbjct: 228 KKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLF---EELPIR-DVFAWTAM 283

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM--RNT 431
           +S       L+   ++F  +     + +++   +++  Y +      A  LF++M  RNT
Sbjct: 284 VSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNT 339

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
               T++T  A       CG + + +  FD M  +  I      ++ M+  +A++G   E
Sbjct: 340 SSWNTMVTGYA------QCGNIDQAKILFDEMPQRDCIS-----WAAMISGYAQSGQSEE 388

Query: 492 AVNLIEQMPFEADVGMWSSI---LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
           A++L  +M  +  +   S++   L  C       LG+++  R+++   +    YI  +++
Sbjct: 389 ALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQT--GYIAGNAL 446

Query: 549 FATSGE 554
            A  G+
Sbjct: 447 LAMYGK 452



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L SC    ++ +GKQLH   +K G     +   N LL MY +CG+  +A  +F+++
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIA-GNALLAMYGKCGSIEEAFDVFEDI 466

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKADLA--ALE 122
             ++  SWN MI G+ + G  +++L LF  M    + +D +   ++S  +   L    +E
Sbjct: 467 TEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGME 526

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSAL- 177
           Y   ++ +    G+  ++   + +++L G+ G  + A   LN+MK     PD     AL 
Sbjct: 527 YFNSMYQNY---GITANAKHYTCMIDLLGRAGRLDEA---LNLMKSMPFYPDAATWGALL 580

Query: 178 ----ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
               I G    G+   A +VF+   D S  M+  + + Y ++    E   +  KMR  GV
Sbjct: 581 GASRIHGDTELGE-KAAEKVFEMEPDNSG-MYVLLSNLYAASGRWREVREMRSKMRDKGV 638


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 193/609 (31%), Positives = 305/609 (50%), Gaps = 107/609 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++CN   ++  GK++H    + G L++ + +   LL MY +CG+  DAL +F+ +  R
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVG-LDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR 370

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALEYG 124
           N  SW AMI GF + G  E++   FN M      P +  F   M I G A +  +AL+ G
Sbjct: 371 NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTF---MSILG-ACSRPSALKQG 426

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +QIH  I+  G   D  + ++L+++Y KCG                              
Sbjct: 427 RQIHDRIIKAGYITDDRVRTALLSMYAKCGS----------------------------- 457

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             + DAR VF+R +  + V WN+MI+ Y+ + +   A+  F  + + G+  D+ST  S+L
Sbjct: 458 --LMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSIL 515

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           + C S   LE GK V     + G   D+ + +AL                          
Sbjct: 516 NVCKSPDALELGKWVQSLIIRAGFESDLHIRNAL-------------------------- 549

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                ++++ +CG +  A ++F  MP + L+SWN++I G  Q+G    A D F  M +  
Sbjct: 550 -----VSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESG 604

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------- 417
           ++ D+ +   +++ACA+  +L  G ++ A +T   LD D ++ T L+  Y KC       
Sbjct: 605 VKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAH 664

Query: 418 --------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                     G +AL LF +M+  GVKP  ITF   LSAC H G
Sbjct: 665 LVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAG 724

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           L+KEG   F++MK  ++I+P +EHY CMVDLF RAG L+EAV  I +M  + D  +W ++
Sbjct: 725 LIKEGLHHFESMK-DFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGAL 783

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  H D  L  KVA++ +ELDP +   Y+ LS+I+A +G W++ + +R +M ++ V 
Sbjct: 784 LGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVV 843

Query: 572 KLPGCSWAD 580
           K PG SW +
Sbjct: 844 KKPGQSWIE 852



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/547 (26%), Positives = 252/547 (46%), Gaps = 104/547 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C  H ++  G+++H H +K   +   + + N L+ MY +CGN   A  +FDEMP +
Sbjct: 110 LLQLCIKHKNLGDGERIHNH-IKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDK 168

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
           + +SWN ++ G+++    E++ +L   M Q     + +++  +++  A AD   ++ G +
Sbjct: 169 DVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLN--ACADAKNVDKGGE 226

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           + S IL  G D D  +G++L+N++ KCG  + A +V N +   D                
Sbjct: 227 LFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRD---------------- 270

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                           + W SMI+G   + +  +A  LF  M   GV  D     S+L A
Sbjct: 271 ---------------LITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKA 315

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+    LE GK+VH    +VG+  ++ V +ALL  Y+K G   DA ++F+ +K  + +  
Sbjct: 316 CNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSW 375

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
             MI  ++  GR+E+A            + +N MI       S IE              
Sbjct: 376 TAMIAGFAQHGRMEEA-----------FLFFNKMI------ESGIEP------------- 405

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            ++ +  S++ AC+  S+L+ G Q+  R+   G  +D  + T+L+  Y KCG        
Sbjct: 406 -NRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNV 464

Query: 419 ------------------------YD-ALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                   YD A+A F  +   G+KP   TFT+IL+ C     +
Sbjct: 465 FERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDAL 524

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           + G KW  ++  +   + ++   + +V +F   G L  A+NL   MP E D+  W++I+ 
Sbjct: 525 ELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIA 582

Query: 514 GCVAHGD 520
           G V HG+
Sbjct: 583 GFVQHGE 589



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 195/413 (47%), Gaps = 72/413 (17%)

Query: 144 SSLVNLYGKCGDFNSANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
           SSL+ L  K  +     ++ N +K    +PD F  + LIS YA CG  N A+++FD   D
Sbjct: 108 SSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPD 167

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
                WN ++ GY+ +    EA  L  +M ++GV  D  T   +L+AC+    ++ G ++
Sbjct: 168 KDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGEL 227

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
                  G   D+ V +AL++ + K G   DA K+F+ L                     
Sbjct: 228 FSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNL--------------------- 266

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
                     P + LI+W SMI GL+++    +A +LF  M +  ++ DK +  S++ AC
Sbjct: 267 ----------PRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKAC 316

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------- 418
            +  +LE G++V AR+  +GLD++  + T+L+  Y KCG                     
Sbjct: 317 NHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWT 376

Query: 419 ------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA-MKW 465
                        +A   FN+M  +G++P  +TF +IL AC     +K+G++  D  +K 
Sbjct: 377 AMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKA 436

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
            Y  D  +   + ++ ++A+ G L +A N+ E++  + +V  W++++   V H
Sbjct: 437 GYITDDRVR--TALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQH 486



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 147/334 (44%), Gaps = 66/334 (19%)

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
           +EA+L+   +    +     T +S+L  C     L  G+++H H     +  D+ + + L
Sbjct: 86  SEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNML 145

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +  Y+K                               CG    AK IF  MP+K + SWN
Sbjct: 146 ISMYAK-------------------------------CGNTNSAKQIFDEMPDKDVYSWN 174

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
            ++ G  Q+    EA  L   M +  ++ DK++   +++ACA+  +++ G ++F+ +   
Sbjct: 175 LLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNA 234

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNE----------------------------- 427
           G D+D  + T+L++ + KCG   DAL +FN                              
Sbjct: 235 GWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLF 294

Query: 428 --MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
             M   GV+P  + F ++L AC+H   +++G++    MK +  +D EI   + ++ ++ +
Sbjct: 295 QVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMK-EVGLDTEIYVGTALLSMYTK 353

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            G + +A+ +   +    +V  W++++ G   HG
Sbjct: 354 CGSMEDALEVFNLVKGR-NVVSWTAMIAGFAQHG 386


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  322 bits (825), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 192/583 (32%), Positives = 297/583 (50%), Gaps = 52/583 (8%)

Query: 45   NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
            N L+  Y R G   DA  +FDE+P  N FS+NA++    +LG    +  LF+ +P  +  
Sbjct: 799  NTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQC 858

Query: 105  SWNMLISGFAKADLA--ALEYGKQIHS-HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
            S+N +I+  A+      AL +   +H+   ++N   F S L +          D  +  Q
Sbjct: 859  SYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAE-----KDSRTGVQ 913

Query: 162  VLNMM-KEP---DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
            V  ++ K P   D +  SAL+  YA C    +ARRVF+   + + V WNS+I+ Y  N  
Sbjct: 914  VHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGP 973

Query: 218  DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVAS 276
              EAL+LF  M + G + D  TLASV+SAC+ L     G+QVH    K     +D+++++
Sbjct: 974  VGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSN 1033

Query: 277  ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
            AL+D Y+K G    A  +F  +     +   ++IT Y+    +EDA+ +F  M  K++I+
Sbjct: 1034 ALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIA 1093

Query: 337  WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
            WN +I   +QNG   EAL LF  + +  +    ++  +V++AC N++ L+LG+Q    V 
Sbjct: 1094 WNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVL 1153

Query: 397  I------IGLDSDQIISTSLVDFYCKCG-------------------------------- 418
                    G +SD  +  SLVD Y K G                                
Sbjct: 1154 KEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGR 1213

Query: 419  -YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
              DAL LF  M  +   P  +T   +LSAC H GLV+EG+++F +M   + I P  +HY+
Sbjct: 1214 AKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYT 1273

Query: 478  CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
            CM+DL  RAG L E   LI++M  E D  +W+S+L  C  H +  +G   A ++ ELDP 
Sbjct: 1274 CMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPR 1333

Query: 538  NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            N+  Y+ LS+++A  G+W     +R  M+ + V K PGCSW +
Sbjct: 1334 NSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIE 1376



 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 168/587 (28%), Positives = 274/587 (46%), Gaps = 67/587 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L  C     +   +QLH H  K+    S + +   L+ +Y  C    DA   FD++
Sbjct: 154 MASVLSCCAECLDLCGARQLHGHIAKRD-FQSNVILGTALVDVYGNCFLLADARRAFDDI 212

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADLAALEYGK 125
              N  SWN ++  +   G  + ++ +F  M         + +  +  A  D  ALE G+
Sbjct: 213 LEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGR 272

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH+ +L +G +    + SS+V++Y KCG  ++A  + N+    D    ++++SG A+CG
Sbjct: 273 CIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCG 332

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++ DA+RVF+   + + V WN+M++GYI + + T ALLLF +MR+     DA TL SVLS
Sbjct: 333 RIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLS 392

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ +  +  G++VH  A K G     I+ +AL+  YSK G                   
Sbjct: 393 ACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCG------------------- 433

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     C R  +   +F     +   SWNS+I G  ++     AL     M   ++
Sbjct: 434 ----------CLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQS-EV 482

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------- 417
             ++ + +S ++ACANI  L+ G Q+ A +   G + D I+ + L+D YCKC        
Sbjct: 483 TPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIR 542

Query: 418 -------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                    G   L LF+EM+  G+K   +TF   L +C   G 
Sbjct: 543 IFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGH 602

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+ G+ +F  M     I P IEHY CM++L  + GC+ E  + +E MPFE    MW  I 
Sbjct: 603 VRLGRSYFTLM-MDESIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIF 661

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
             C  +G++ LG + A+ + + +P     ++      +  G  E  S
Sbjct: 662 DCCREYGNRKLGERAAKCINDSNPLTPVQFVATVDYESNDGGREAES 708



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 155/570 (27%), Positives = 258/570 (45%), Gaps = 85/570 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNST----LP--IANRLLQMYMRCGNPTDALL 62
           A LL+   +H S+   +++  H       +ST    +P  + NR ++    CG+  DA  
Sbjct: 47  ASLLRLATSHGSLSAARRIATHLAASSSASSTSRSSVPTFLFNRAIESLAACGSVADARE 106

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKA-D 117
           LFD MP R+  SWNA+I    + GH  ++L LF+ M     +  D +   ++S  A+  D
Sbjct: 107 LFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLD 166

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L      +Q+H HI       + +LG++LV++YG                          
Sbjct: 167 LCG---ARQLHGHIAKRDFQSNVILGTALVDVYG-------------------------- 197

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                NC  + DARR FD   + +++ WN ++  Y        A+ +F +M   GV    
Sbjct: 198 -----NCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLG 252

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T++  + AC     LE G+ +H    + G    V V S+++D Y+K G    A  LF+ 
Sbjct: 253 YTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNL 312

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
             + D ++  ++++  +SCGRI DAK +F  M  ++L+SWN+M+ G  ++     AL LF
Sbjct: 313 APMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLF 372

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M +     D  +L SV+SAC  I  +  GE+V A     G  S  I+  +LV  Y KC
Sbjct: 373 QQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKC 432

Query: 418 ----------------------------GYD-------ALALFNEMRNTGVKPTIITFTA 442
                                       GY+       AL    +M++  V P   TF++
Sbjct: 433 GCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSS 491

Query: 443 ILSACDHCGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            L+AC +  L+K+G +    M +  Y ID  +   S ++D++ +    + ++ + E  P 
Sbjct: 492 ALAACANIFLLKQGMQIHAYMIRKGYEIDDILR--SVLIDMYCKCRQFDYSIRIFEARP- 548

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERM 531
             DV +W+S++ GC   G    G  + + M
Sbjct: 549 SRDVILWNSMIFGCAYSGKGEYGLDLFDEM 578



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 186/398 (46%), Gaps = 52/398 (13%)

Query: 139  DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
            ++ L ++LV+ Y + G    A +V + +  P+ F  +AL+S +A  G+  DAR +F    
Sbjct: 794  ETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIP 853

Query: 199  DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
            D     +N++I+    ++   +ALL    M  +  + +A + AS LSAC++      G Q
Sbjct: 854  DPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQ 913

Query: 259  VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
            VH    K     DV + SALLD Y+K   P +A ++F  +   + +  N++IT Y     
Sbjct: 914  VHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCY----- 968

Query: 319  IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
                                       QNG   EAL LF +M K     D+ +LASV+SA
Sbjct: 969  --------------------------EQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSA 1002

Query: 379  CANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKP 435
            CA +++   G QV ARV        D ++S +LVD Y KCG    A  +F+ M +     
Sbjct: 1003 CAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASR---- 1058

Query: 436  TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
            ++++ T++++       V++ Q  F  M     ++  +  ++ ++  +A+ G   EA+ L
Sbjct: 1059 SVVSETSLITGYARSANVEDAQMVFSQM-----VEKNVIAWNVLIAAYAQNGEEEEALRL 1113

Query: 496  IEQMPFEADVGMWSS------ILRGCVAHGDKGLGRKV 527
              ++  E+   +W +      +L  C    D  LG++ 
Sbjct: 1114 FVRLKRES---VWPTHYTYGNVLNACGNVADLQLGQQA 1148



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 70/290 (24%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            LA ++ +C    +   G+Q+H   +K       + ++N L+ MY +CG    A  +FD M
Sbjct: 996  LASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRM 1055

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
              R+  S  ++I G+ +  + E +  +F+ M +KN  +WN+LI+ +A+            
Sbjct: 1056 ASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFV 1115

Query: 116  ---------------------ADLAALEYGKQIHSHILVNGLDF------DSVLGSSLVN 148
                                  ++A L+ G+Q H H+L  G  F      D  +G+SLV+
Sbjct: 1116 RLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVD 1175

Query: 149  LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
            +Y K G  +   +V   M   D+   +A+I G+A  G+  D                   
Sbjct: 1176 MYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKD------------------- 1216

Query: 209  ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
                        AL LF +M  +    D+ T+  VLSAC   G +E G++
Sbjct: 1217 ------------ALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRR 1254


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 192/609 (31%), Positives = 310/609 (50%), Gaps = 106/609 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            ++ L++C     +  GK++H   +K    ++   +   LL MY +CG    +  +F+++
Sbjct: 157 FSKALKACTEVQDLDNGKKIHCQIVKVPSFDNV--VLTGLLDMYAKCGEIKSSYKVFEDI 214

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             RN   W +MI G++K    E+ L LFN M +     N++++  L+    K  L AL  
Sbjct: 215 TLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTK--LRALHQ 272

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK  H  ++ +G++  S L +SL+++Y KC                              
Sbjct: 273 GKWFHGCLIKSGIELSSCLVTSLLDMYVKC------------------------------ 302

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G +++ARRVF+  +    VMW +MI GY  N    EAL LF KM   G+  +  T+ASV
Sbjct: 303 -GDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASV 361

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LS C  +G LE G+ +HG + KVG+                                +DT
Sbjct: 362 LSGCGLVGNLELGRSIHGLSIKVGI--------------------------------WDT 389

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
            + N ++ +Y+ C +  DAK++F     K +++WNS+I G SQNGS  EAL LF  MN  
Sbjct: 390 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTE 449

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCG--- 418
            +  +  ++AS+ SACA++ SL +G  + A    +G    S   + T+L+DFY KCG   
Sbjct: 450 SVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAE 509

Query: 419 -----YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACD 448
                +D                         +L LF EM     KP   TFT++LSAC 
Sbjct: 510 SARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACS 569

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H G+V EG+K+F +M   Y+  P  +HY+CMVD+ ARAG L +A+++IE+MP + DV  +
Sbjct: 570 HTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCF 629

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            + L GC  H    LG  V ++M++L P++A  Y+ +S+++A+ G W ++  +R++M+++
Sbjct: 630 GAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQR 689

Query: 569 HVGKLPGCS 577
            + K+ G S
Sbjct: 690 GLSKIAGHS 698



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 138/562 (24%), Positives = 244/562 (43%), Gaps = 111/562 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    S+   +Q H      G++   + IA +L+ +Y   G   DA L+FD++P  
Sbjct: 62  LLSKCTNIDSL---RQAHGVLTGNGLMGD-ISIATKLVSLYGSFGYTKDARLVFDQIPEP 117

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-----DLAALEYGK 125
           + + W  ++  +       + ++ ++++  K+ F ++ ++  F+KA     ++  L+ GK
Sbjct: 118 DFYLWKVILRCYCLNNESFEVIKFYDLL-MKHGFGYDDIV--FSKALKACTEVQDLDNGK 174

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +IH  I V    FD+V+                               L+ L+  YA CG
Sbjct: 175 KIHCQI-VKVPSFDNVV-------------------------------LTGLLDMYAKCG 202

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++  + +VF+  T  + V W SMI+GY+ N+   E L+LF++MR N VL +  T  +++ 
Sbjct: 203 EIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVM 262

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ L  L  GK  HG   K G+     + ++LLD Y K G  S+A ++F+E    D ++
Sbjct: 263 ACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVM 322

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
              MI  Y                               + NGS  EAL LF  M+ + +
Sbjct: 323 WTAMIVGY-------------------------------THNGSVNEALSLFQKMSGVGI 351

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           + +  ++ASV+S C  + +LELG  +      +G+  D  ++ +LV  Y KC        
Sbjct: 352 KPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAKY 410

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                     ++AL LF+ M    V P  +T  ++ SAC   G 
Sbjct: 411 VFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGS 470

Query: 453 VKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           +  G      ++K  +     +   + ++D +A+ G   E+  LI     E +   WS++
Sbjct: 471 LAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDA-ESARLIFDTIEEKNTITWSAM 529

Query: 512 LRGCVAHGDKGLGRKVAERMIE 533
           + G    GD     ++ E M++
Sbjct: 530 IGGYGKQGDTKGSLELFEEMLK 551


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 200/627 (31%), Positives = 320/627 (51%), Gaps = 73/627 (11%)

Query: 1   MDTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +D +ID    A LL+SC T   +++GKQ+H H LK G       +  +LLQMY R G   
Sbjct: 56  LDKQIDSSTYASLLESCRT---LNLGKQVHAHTLKTGFHGHEF-VETKLLQMYGRFGCLD 111

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--- 115
           DA L+F +MP+RN +SW A++   +  G+ E++L LF  + Q +D      +        
Sbjct: 112 DANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKL-QLDDIGLEFFVFPVVLKLC 170

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
             L  LE G+Q+H  ++                   +C D  SA ++ +     +    +
Sbjct: 171 GGLRVLELGRQLHGVVI------------------KRCADMGSALKIFSGFSVKNVVSYN 212

Query: 176 ALISGYANCGKMNDARRVFDRT--TDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNG 232
            +I GY   G +  A+ +FD+       ++ WNSMISGY  N    EAL +F  +    G
Sbjct: 213 TMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEG 272

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +  D+ TL SVL+AC+ +  L  GK+VH  A   G+  +  V  AL++ YSK      A 
Sbjct: 273 IEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQ 332

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQ 346
             F  +   DT   N +I+ Y+ C ++E+ +++ + M      PN  + +WN +I G  +
Sbjct: 333 LAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPN--VYTWNGIISGHVE 390

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           NG    AL LF  M    LR D +++  ++ ACA ++++  G+QV A     G + D  I
Sbjct: 391 NGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHI 450

Query: 407 STSLVDFYCKCGY---------------------------------DALALFNEMRNTGV 433
             +LVD Y KCG                                  + +ALF  M   G 
Sbjct: 451 GAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGF 510

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           +P  +TF ++LS+C H G V+ G ++FD M + Y++ P ++HY+C+VDL +RAG L+EA 
Sbjct: 511 RPDHVTFLSVLSSCVHAGAVETGHEFFDLMTY-YNVTPSLKHYTCIVDLLSRAGRLDEAY 569

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
            L++++P + D  MW ++L GCV  G+  LG   AE +IEL+P N   Y+ L++++A +G
Sbjct: 570 ELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAG 629

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSWAD 580
            W      R +++++ + K PGCSW +
Sbjct: 630 RWHDLDRTRQMIKDRGMHKSPGCSWIE 656


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 190/596 (31%), Positives = 300/596 (50%), Gaps = 44/596 (7%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q H   LK G  N    I+ +L+  Y       DA L+   +P    +S++++I    K 
Sbjct: 36  QAHARILKSGAQNDGY-ISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKA 94

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIHSHILVNGLDFDSVLG 143
               +S+ +F+ M          ++    K  A+L+A + GKQIH    V+GLD D+ + 
Sbjct: 95  KLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQ 154

Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----D 199
            SL ++Y +CG    A +V + M E D    SAL+ GYA  G + +  R+         +
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            + V WN ++SG+  +    EA+++F KM   G   D  T++SVL +      L  G+Q+
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQI 274

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           HG+  K G++ D  V SA+LD Y K G      KLF E ++ +T + N  IT  S  G +
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334

Query: 320 EDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
           + A  +F     + +    +SW S+I G +QNG  IEAL+LF  M    ++ ++ ++ S+
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
           + AC NI++L  G         + L  D  + ++L+D Y KCG                 
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNL 454

Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                            + +++F  +  T +KP  I+FT++LSAC   GL  EG K+F+ 
Sbjct: 455 VCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNM 514

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           M  +Y I P +EHYSCMV+L  RAG L EA +LI+++PFE D  +W ++L  C    +  
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVD 574

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           L    A+++  L+PEN   Y+ +S+I+A  G W +   IR+ M    + K PGCSW
Sbjct: 575 LAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 148/302 (49%), Gaps = 16/302 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L S     ++++G+Q+H + +K+G+L     I+  +L MY + G+    + LFDE 
Sbjct: 255 VSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVIS-AMLDMYGKSGHVYGIIKLFDEF 313

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK--ADLAAL 121
                   NA I G  + G  +K+L++F +  ++    N  SW  +I+G A+   D+ AL
Sbjct: 314 EMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEAL 373

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC---GDFNSANQVLNMMKEPDDFCL-SAL 177
           E  +++     V G+  + V   S++   G     G   S +     +   DD  + SAL
Sbjct: 374 ELFREMQ----VAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSAL 429

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I  YA CG++  ++ VF+     + V WNS+++GY  + +  E + +F  + R  +  D 
Sbjct: 430 IDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDF 489

Query: 238 STLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
            +  S+LSAC  +G  + G K  +  + + G+   +   S +++   + G   +A  L  
Sbjct: 490 ISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIK 549

Query: 297 EL 298
           E+
Sbjct: 550 EI 551


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 198/625 (31%), Positives = 296/625 (47%), Gaps = 98/625 (15%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + V   +H   LK  +      + N LL  Y + G    A  +FDEMP  N F+ NA++ 
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA------------------------KA 116
                       +LF  MP+++  S+N LI+GF+                        + 
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRI 147

Query: 117 DLAAL----------EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
            L+A+            G  +H  +L  G    + +GS LV++Y K G    A +V   M
Sbjct: 148 TLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           +       + LI+G   C  + DA+ +F    D  S+ W +M++G   N    EAL +F 
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
           +MR  GV  D  T  S+L+AC +L   E GKQ+H +  +    D+V V SAL+D YSK  
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSK-- 325

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
                                        C  I  A+ +FR M  +++ISW +MIVG  Q
Sbjct: 326 -----------------------------CRSIRLAEAVFRRMTCRNIISWTAMIVGYGQ 356

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           N    EA+  F  M    ++ D F+L SVIS+CAN++SLE G Q      + GL     +
Sbjct: 357 NACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 407 STSLVDFYCKCG--YDALALFNEM---------------------RNT----------GV 433
           S +LV  Y KCG   DA  LF+EM                     + T          G+
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGL 476

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           KP  +TF  +LSAC   GLV++G  +FD+M+  + I P  +HY+CM+DL++R+G   EA 
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAE 536

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             I+QMP   D   W+++L  C   G+  +G+  AE ++E DP+N  +Y+ L S+ A  G
Sbjct: 537 EFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKG 596

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSW 578
           +W + + +R  MR++ V K PGCSW
Sbjct: 597 QWTEVAHLRRGMRDRQVKKEPGCSW 621



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G++   + ++N L+ +Y +CG+  DA  LFDEM
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMR-YITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--AL 121
              +  SW A++ G+ + G  ++++ LF  M     + +  ++  ++S  ++A L     
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGC 500

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALIS 179
           +Y   +     +  +D      + +++LY + G F  A + +  M   PD F  + L+S
Sbjct: 501 DYFDSMQKDHDIVPIDDHY---TCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  321 bits (823), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 182/579 (31%), Positives = 302/579 (52%), Gaps = 48/579 (8%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           G+   +    N ++  Y+       A  +F++MP R+  SWN M+ G++K G+   +  L
Sbjct: 85  GMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARAL 144

Query: 95  FNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
           FN MP+K+  SWN ++SGFA+     +E  ++I   +LV     + +  + L++ Y + G
Sbjct: 145 FNQMPEKDVVSWNAMLSGFAQNGF--VEEARKIFDQMLVK----NEISWNGLLSAYVQNG 198

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
               A ++ +   + +    + L+ GY    +++DAR +FDR      + WN MI+GY  
Sbjct: 199 RIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQ 258

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N   +EA  LF ++     + D     +++S     G L+   ++     +     + + 
Sbjct: 259 NGLLSEARRLFEEL----PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVS 310

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            +A++  Y +      A +LF ++   +T   NTM+T Y+ CG I+ AK +F  MP +  
Sbjct: 311 WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDC 370

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
           ISW +MI G +Q+G   EAL LF  M +    +++ +LA  +S+CA I++LELG+Q+  R
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430

Query: 395 VTIIGLDSDQIISTSLVDFYCKCG---------------------------------YDA 421
           +   G  +  I   +L+  Y KCG                                  +A
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           LALF  M+ T +KP  +T   +LSAC H G V +G ++F++M   Y I    +HY+CM+D
Sbjct: 491 LALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMID 549

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
           L  RAG L+EA+NL++ MPF  D   W ++L     HGD  LG K AE++ E++P+N+  
Sbjct: 550 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGM 609

Query: 542 YIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           Y+ LS+++A SG W +   +R  MR+K V K+PG SW +
Sbjct: 610 YVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVE 648



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 205/426 (48%), Gaps = 36/426 (8%)

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
           +D D V  +  ++ Y + G   SA  V N M+       +A+ISGY +  K + AR+VF+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           +  D   + WN M+SGY+ N   + A  LF++M      +D  +  ++LS  +  GF+E 
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPE----KDVVSWNAMLSGFAQNGFVEE 171

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
            +++        ++ + I  + LL  Y + G   DA +LF     ++ +  N ++  Y  
Sbjct: 172 ARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
             R++DA+ +F  MP +  ISWN MI G +QNG   EA  LF    +L +R D F+  ++
Sbjct: 228 KKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLF---EELPIR-DVFAWTAM 283

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM--RNT 431
           +S       L+   ++F  +     + +++   +++  Y +      A  LF++M  RNT
Sbjct: 284 VSGFVQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNT 339

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
               T++T  A       CG + + +  FD M  +  I      ++ M+  +A++G   E
Sbjct: 340 SSWNTMVTGYA------QCGNIDQAKILFDEMPQRDCIS-----WAAMISGYAQSGQSEE 388

Query: 492 AVNLIEQMPFEADVGMWSSI---LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
           A++L  +M  +  +   S++   L  C       LG+++  R+++   +    YI  +++
Sbjct: 389 ALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQT--GYIAGNAL 446

Query: 549 FATSGE 554
            A  G+
Sbjct: 447 LAMYGK 452



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L SC    ++ +GKQLH   +K G     +   N LL MY +CG+  +A  +F+++
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIA-GNALLAMYGKCGSIEEAFDVFEDI 466

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKADLA--ALE 122
             ++  SWN MI G+ + G  +++L LF  M    + +D +   ++S  +        +E
Sbjct: 467 TEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGME 526

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSAL- 177
           Y   ++ +    G+  ++   + +++L G+ G  + A   LN+MK     PD     AL 
Sbjct: 527 YFNSMYQNY---GITANAKHYTCMIDLLGRAGRLDEA---LNLMKSMPFYPDAATWGALL 580

Query: 178 ----ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
               I G    G+   A +VF+   D S  M+  + + Y ++    E   +  KMR  GV
Sbjct: 581 GASRIHGDTELGE-KAAEKVFEMEPDNSG-MYVLLSNLYAASGRWREVREMRSKMRDKGV 638


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 194/599 (32%), Positives = 302/599 (50%), Gaps = 73/599 (12%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT--DALLLFDEMPRRNCFSWNAMIEGF 82
           KQ+H   L+ G+       A+RL+        P+   A  +FD++P  N ++WN +I  +
Sbjct: 52  KQIHAQMLRTGLFFDPFS-ASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAY 110

Query: 83  MKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFD 139
               +  +SL +F  ++ Q  DF          KA  +L  L  GK  H      G+   
Sbjct: 111 ASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFH------GMVIK 164

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
            +LGS                         D F L++LI  YA CG++    RVF     
Sbjct: 165 VLLGS-------------------------DVFILNSLIHFYAKCGELGLGYRVFVNIPR 199

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
              V WNSMI+ ++      EAL LF +M    V  +  T+  VLSAC+     E G+ V
Sbjct: 200 RDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWV 259

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H +  +  + + + +++A+LD Y+K G   DA +LF ++   D +   TM+  Y+  G  
Sbjct: 260 HSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEY 319

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISA 378
           + A+ IF  MPN+ + +WN++I    Q G P EAL+LF  +      + D+ +L S +SA
Sbjct: 320 DAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSA 379

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------- 418
           CA + +++LG  +   +   G+  +  ++TSL+D YCKCG                    
Sbjct: 380 CAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVW 439

Query: 419 -------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         DA+ALF++M+   VKP  +TFT IL AC H GLV+EG+ +F+ M+ 
Sbjct: 440 SAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMEL 499

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
            Y + P ++HY+CMVD+  RAG L EAV LIE+MP      +W ++L  C  H +  L  
Sbjct: 500 VYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAE 559

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS--WADGI 582
           +   ++IEL+P N  AY+ LS+I+A +G+W++ S +R +MR+  + K PGCS    DGI
Sbjct: 560 QACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGI 618


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 193/607 (31%), Positives = 310/607 (51%), Gaps = 46/607 (7%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           +C++   I +  QLH    K G  N+ + I N ++ MY++C     A  +F  + + + F
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKV-IQNSIIDMYIKCDAIYAAEQVFLRIEKPSLF 60

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL- 132
           SWN MI G+ KL    +++  F  MP+++  SWN +IS F+   L     G  +   I  
Sbjct: 61  SWNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQG 120

Query: 133 --VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK--EP--DDFCLSALISGYANCGK 186
              N + + SVL S+  N+Y    DF     +   +   EP  D    + L+  YA CG 
Sbjct: 121 CQPNSMTYASVL-SACANIY----DFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGL 175

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           ++ ++RVF+   + + V W S+ISG        E   +F++MR++ V+ D   LA++L  
Sbjct: 176 IDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGV 235

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C     +  G+Q+HG   K G+   V V +A L  Y+K G    A   F  +  +D I  
Sbjct: 236 CEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISW 295

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
            TMIT +S  G +E A+  F  MP +++ISWN+M+    QN    E L L+  M + ++R
Sbjct: 296 TTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVR 355

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  +  ++I AC+ ++  +LG Q+ ++   +GL SD  +  S +  Y +CG        
Sbjct: 356 PDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNL 415

Query: 419 YDALA-------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLV 453
           +D++                          +F  M   G KP  IT+ AILS C H GLV
Sbjct: 416 FDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLV 475

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           KE +  F++M   + I   +EH+ CMVDLF RAG L  A+++I+QMPF+ +  +W ++L 
Sbjct: 476 KEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGALLS 535

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H D  +     + ++EL+ EN  +YI L++ +++ G  E  S +R +M+EK V K 
Sbjct: 536 ACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRVQKD 595

Query: 574 PGCSWAD 580
           PGCSW +
Sbjct: 596 PGCSWIE 602


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 189/609 (31%), Positives = 310/609 (50%), Gaps = 76/609 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFD 65
           L  LL++C +   +   +Q+H   +KKG LN+   + NR++        G+   A  LFD
Sbjct: 42  LISLLETCESMDQL---QQVHCQAIKKG-LNANPVLQNRVMTFCCTHEYGDFQYARRLFD 97

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAAL 121
           E+P  N F WN MI G+ +L   +  + L+  M ++    + +++  L  GF +    AL
Sbjct: 98  EIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRD--IAL 155

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           EYG+Q+H H+L +GL ++  + ++LV +Y  CG  ++A  V ++  + D    + +IS Y
Sbjct: 156 EYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAY 215

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
              GK  ++RR                               LF  M    VL    TL 
Sbjct: 216 NKVGKFEESRR-------------------------------LFLVMEDKQVLPTTVTLV 244

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            VLSACS L  L  GK+VH +     V  ++++ +A++D Y+  G    A  +F  +   
Sbjct: 245 LVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR 304

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D I   T+++ +++ G I+ A++ F  MP K  +SW +MI G  ++    EAL+LF NM 
Sbjct: 305 DIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQ 364

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---- 417
             +++ D+F++ SV++ACA++ +LELGE +   +    + +D  +  +L+D Y KC    
Sbjct: 365 ATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVD 424

Query: 418 -----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACD 448
                                        G  AL +F+ M    + P  IT+  +LSAC 
Sbjct: 425 KAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACT 484

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV +G+K+F  M  Q+ I+P I HY C+VDL ARAG L EA  +IE MP +A+  +W
Sbjct: 485 HTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVW 544

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L GC  + +  +   V ++++EL+P+N   Y+ L +I+A    W     +R +M +K
Sbjct: 545 GALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDK 604

Query: 569 HVGKLPGCS 577
            + K PGCS
Sbjct: 605 GIKKXPGCS 613


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/606 (31%), Positives = 317/606 (52%), Gaps = 38/606 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C +     +  QLH    K G    T  I N ++ MY++CG+   A  +F ++ R 
Sbjct: 152 VMKACGSLGDSRLAIQLHALVSKLGFGMETC-IQNSVVGMYVKCGDVDLAETVFFDIERP 210

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA---LEYGKQI 127
           + F WN+MI G+ ++    K+LQ+FN MP++++ SWN LIS F++          + +  
Sbjct: 211 SLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMC 270

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           +     N + + SVL +       K G    A ++L M    D    + LI  YA CG +
Sbjct: 271 NQGFSPNFMTYGSVLSACASTSDLKWGAHLHA-RILRMEHSLDLVFGNGLIDMYAKCGCL 329

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           + A+RVF    +   + WNS+I+G +      +AL+LF++MRR+ V+ D   L ++L  C
Sbjct: 330 DLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVC 389

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           S   +   G+ +HG+  K G+     V +A++  Y+K G    A  +F  + + +TI   
Sbjct: 390 SGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWT 449

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            MIT +S  G I  A+  F  MP +++++WNSM+    QNG   E L L+ +M    ++ 
Sbjct: 450 AMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQP 509

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------Y 419
           D  +  + I ACA+++ ++LG QV    T  GL  +  ++ S+V  Y +CG        +
Sbjct: 510 DWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTF 569

Query: 420 DALA-------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
           D++                           F +M  T  KP  I++ ++LS C H GLV 
Sbjct: 570 DSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVA 629

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG+ +FD+M   + I P  EH+SCMVDL  RAG L +A +LIE MPF+ +  +WS++L  
Sbjct: 630 EGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGS 689

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H D  L    A++++ELD E +  Y+ LS++++ SGE +  + +R +M+ K +    
Sbjct: 690 CRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSR 749

Query: 575 GCSWAD 580
           GCSW +
Sbjct: 750 GCSWIE 755



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 160/590 (27%), Positives = 267/590 (45%), Gaps = 80/590 (13%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           Q   TH S H+ ++LH   +  G L+S+L + N LL MY  CG   DA  +F E   RN 
Sbjct: 16  QCSFTHKSPHIARKLHAQLILSG-LDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNI 74

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMP--QKNDFSWNMLISGFAKADLAALEY------- 123
           F+WN MI   +       + +LF+ MP   K+  SW  +ISG+++    +  +       
Sbjct: 75  FTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMI 134

Query: 124 ------GKQ----------------------IHSHILVNGLDF--DSVLGSSLVNLYGKC 153
                 GK                       I  H LV+ L F  ++ + +S+V +Y KC
Sbjct: 135 RDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKC 194

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           GD + A  V   ++ P  FC +++I GY+       A ++F+R  +   V WN++IS + 
Sbjct: 195 GDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFS 254

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
            +    + L +F +M   G   +  T  SVLSAC+S   L+ G  +H    ++    D++
Sbjct: 255 QHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLV 314

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
             + L+D Y+K G    A ++F  L+ +D I  N++IT     G  EDA  +F  M   S
Sbjct: 315 FGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSS 374

Query: 334 LI-------------------SWNSMIVGLSQN---------GSPIEALDLFC-NMNKLD 364
           ++                   S   ++ G +           G+ I  +   C + +K D
Sbjct: 375 VVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKAD 434

Query: 365 LRMDKFSLASVISACANISSLEL-GEQVFARVTIIGLDSDQIIS-TSLVDFYCKCGY--D 420
           L      L + IS  A I++    G+   AR     +    I++  S++  Y + G+  +
Sbjct: 435 LVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEE 494

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG-QKWFDAMKWQYHIDPEIEHYSCM 479
            L L+  MR+ GV+P  ITFT  + AC    +VK G Q    A K+   ++  +   + +
Sbjct: 495 GLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVA--NSI 552

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           V +++R G + EA N  + +  + D+  W+++L    A    GLG KV +
Sbjct: 553 VTMYSRCGLIKEAKNTFDSID-DKDLISWNAML---AAFAQNGLGIKVID 598



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 210/492 (42%), Gaps = 86/492 (17%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            +++H+ ++++GLD    L ++L+++Y  CG  + A QV       + F  + +I    +
Sbjct: 27  ARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVS 86

Query: 184 CGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE 235
             +M+DA ++FD    R  D  SV W +MISGY  N   + +   F  M R+    G   
Sbjct: 87  SSRMSDAEKLFDEMPVRVKD--SVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNY 144

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  +  SV+ AC SLG      Q+H    K+G   +  + ++++  Y K G    A  +F
Sbjct: 145 DPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVF 204

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            +++       N+MI  YS       A  IF  MP +  +SWN++I   SQ+G  ++ L 
Sbjct: 205 FDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLA 264

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           +F  M       +  +  SV+SACA+ S L+ G  + AR+  +    D +    L+D Y 
Sbjct: 265 MFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYA 324

Query: 416 KC---------------------------------GYDALALFNEMRNTGVK------PT 436
           KC                                 G DAL LFN+MR + V       PT
Sbjct: 325 KCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPT 384

Query: 437 IITF-----------------------------TAILSACDHCGLVKEGQKWFDAMKWQY 467
           I+                                AI++    CG   +    F  M  + 
Sbjct: 385 ILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRN 444

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG--DKGLGR 525
            I      ++ M+  F+R+G + +A    + MP E ++  W+S+L   V +G  ++GL  
Sbjct: 445 TIS-----WTAMITAFSRSGDIGKARGYFDMMP-ERNIVTWNSMLSTYVQNGFSEEGLKL 498

Query: 526 KVAERMIELDPE 537
            V+ R   + P+
Sbjct: 499 YVSMRSNGVQPD 510


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 189/609 (31%), Positives = 310/609 (50%), Gaps = 76/609 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFD 65
           L  LL++C +   +   +Q+H   +KKG LN+   + NR++        G+   A  LFD
Sbjct: 21  LISLLETCESMDQL---QQVHCQAIKKG-LNANPVLQNRVMTFCCTHEYGDFQYARRLFD 76

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAAL 121
           E+P  N F WN MI G+ +L   +  + L+  M ++    + +++  L  GF +    AL
Sbjct: 77  EIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRD--IAL 134

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           EYG+Q+H H+L +GL ++  + ++LV +Y  CG  ++A  V ++  + D    + +IS Y
Sbjct: 135 EYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAY 194

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
              GK  ++RR                               LF  M    VL    TL 
Sbjct: 195 NKVGKFEESRR-------------------------------LFLVMEDKQVLPTTVTLV 223

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            VLSACS L  L  GK+VH +     V  ++++ +A++D Y+  G    A  +F  +   
Sbjct: 224 LVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR 283

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D I   T+++ +++ G I+ A++ F  MP K  +SW +MI G  ++    EAL+LF NM 
Sbjct: 284 DIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQ 343

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---- 417
             +++ D+F++ SV++ACA++ +LELGE +   +    + +D  +  +L+D Y KC    
Sbjct: 344 ATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVD 403

Query: 418 -----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACD 448
                                        G  AL +F+ M    + P  IT+  +LSAC 
Sbjct: 404 KAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACT 463

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV +G+K+F  M  Q+ I+P I HY C+VDL ARAG L EA  +IE MP +A+  +W
Sbjct: 464 HTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVW 523

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L GC  + +  +   V ++++EL+P+N   Y+ L +I+A    W     +R +M +K
Sbjct: 524 GALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDK 583

Query: 569 HVGKLPGCS 577
            + K PGCS
Sbjct: 584 GIKKTPGCS 592


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 303/602 (50%), Gaps = 66/602 (10%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           G L   +  +N+ +  +MR G   DA  LF  MPRR+  ++NAM+ G+   G    +  L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 95  FNVMPQKNDFSWNMLISGFA-KADLA-------------ALEYGKQIHSHI---LVN--- 134
           F  +P+ +++S+N L+   A  + LA             ++ Y   I SH    LV+   
Sbjct: 92  FRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR 151

Query: 135 -----GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
                  + D+V  + ++  Y + G    A  + N   E D    +AL+SGY   GKM++
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSE 211

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR +FDR      V WN M+SGY    +  EA  LF        + D  T  +V+S  + 
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA----APVRDVFTWTAVVSGYAQ 267

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
            G LE  ++V     +     + +  +A++  Y +R M  +A +LF+ +   +    NTM
Sbjct: 268 NGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTM 323

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           +T Y+  G +E+AK +F TMP K  +SW +M+   SQ G   E L LF  M +    +++
Sbjct: 324 LTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 383

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            + A V+S CA+I++LE G Q+  R+   G      +  +L+  Y KCG           
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +AL +F+ MR T  KP  IT   +L+AC H GLV++G
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             +F +M   + +  + EHY+CM+DL  RAG L EA +L++ MPFE D  MW ++L    
Sbjct: 504 ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASR 563

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  LGR  AE++ EL+PENA  Y+ LS+I+A+SG+W  +  +R +M E+ V K+PG 
Sbjct: 564 IHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGF 623

Query: 577 SW 578
           SW
Sbjct: 624 SW 625



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G QLH   ++ G       + N LL MY +CGN  DA   F+EM  R
Sbjct: 389 VLSTCADIAALECGMQLHGRLIRAGYGVGCF-VGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--ALEYG 124
           +  SWN MI G+ + G  +++L++F++M     + +D +   +++  + + L    + Y 
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
             +H      G+       + +++L G+ G    A+ ++  M  EPD     AL+
Sbjct: 508 YSMHHDF---GVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 191/618 (30%), Positives = 326/618 (52%), Gaps = 86/618 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL----LLFDE 66
           LL+SC    S   G Q+H   +  G+ +    I+ RL+  +   G+  D L    LLF +
Sbjct: 15  LLESCK---SFKQGLQIHAQTIVNGLHHQIFSIS-RLISFFSLLGS-KDGLDHSRLLFSQ 69

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAAL 121
           +   N F WN MI G+ +  +  +++ L+  M  K     N+F++  L++  A+  L++L
Sbjct: 70  IDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCAR--LSSL 127

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           E G ++HSHI+ +G                                E D F  +ALI  Y
Sbjct: 128 EPGHEVHSHIIKHGF-------------------------------ESDLFVRNALIHLY 156

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           +  G +N AR +FD +     V +N+MI GY   N+   AL LF +M+ +G+L D  T  
Sbjct: 157 SVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFV 216

Query: 242 SVLSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           ++ S CS L     GKQ+H    K    +  ++++ SA++D Y+K G+ + A ++FS + 
Sbjct: 217 ALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMG 276

Query: 300 VYDTILL-NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              +    ++M+  Y+ CG I  A+ +F  M  + +ISW +MI G SQ G   EAL+LF 
Sbjct: 277 TSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFK 336

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL-DSDQIISTSLVDFYCKC 417
            M  L ++ D+ +L +V+SACA + + +LG++++ +    G+ + + I++ +++D Y KC
Sbjct: 337 EMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKC 396

Query: 418 G-----------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           G                                     A+ +F E+ +TG+KP  +TF  
Sbjct: 397 GSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVG 456

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L AC H GL++EG+K F++M   Y I P++EHY CMVDL  R GCL EA +L+++MPFE
Sbjct: 457 VLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFE 516

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
           A+  +W ++L  C  HG+  +G    ++++E++ ++   Y+ LS+I A + +WE++  +R
Sbjct: 517 ANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVR 576

Query: 563 DIMREKHVGKLPGCSWAD 580
            +M +  + K PG S+ +
Sbjct: 577 KVMEDHGIRKPPGWSYIE 594



 Score = 46.2 bits (108), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    +  +GK+L+  +++ G+ N    +   ++ MY +CG+   AL +F  +
Sbjct: 350 LVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409

Query: 68  PR--RNCFSWNAMIEGFMKLGHKEKSLQLF 95
            +  +  F +N+MI G  + G  E ++ +F
Sbjct: 410 GKNMKTGFVFNSMIAGLAQHGLGETAITVF 439


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 206/606 (33%), Positives = 311/606 (51%), Gaps = 74/606 (12%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRL-LQMYMRCGNPTDALLLFDEMP 68
           +LL  C    SI   KQ+H H +K G+ N+   ++  +      R G+ + A+ LF+ + 
Sbjct: 34  KLLSKC---QSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIE 90

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYG 124
             N F WN+MI G         +L  F  M     + N +++  L+   AK  LA+   G
Sbjct: 91  EPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAK--LASAHEG 148

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQIH+H+L  G   D  + +SL+N+Y + G+ N+A  V +     D    +ALI+GYA  
Sbjct: 149 KQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALW 208

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G M+ AR++FD       V WN+MI+GY       EALLLF  MR+  V  + ST+ SVL
Sbjct: 209 GYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVL 268

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SAC+    L+ G  +         I+D             RG       L S LK     
Sbjct: 269 SACAQSNALDLGNSMRSW------IED-------------RG-------LCSNLK----- 297

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
           L+N +I +YS CG ++ A+ +F  M  + +ISWN MI G +   S  EAL LF  M    
Sbjct: 298 LVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASG 357

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           +   + +  S++ +CA++ +++LG+ + A +          +STSL+D Y KCG      
Sbjct: 358 VEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAAR 417

Query: 419 --YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCG 451
             +D                         A  LF++M + G++P  ITF  ILSAC H G
Sbjct: 418 QVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAG 477

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV  GQ++F +M   Y I P+ +HY CM+DL  RAG   EA +L++ M  + D  +W S+
Sbjct: 478 LVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSL 537

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  HG   LG  VAER+ EL+P+N  AY+ LS+I+A +G+W+  + IR  + ++ + 
Sbjct: 538 LGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMK 597

Query: 572 KLPGCS 577
           K+PGC+
Sbjct: 598 KVPGCT 603


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 303/602 (50%), Gaps = 66/602 (10%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           G L   +  +N+ +  +MR G   DA  LF  MPRR+  ++NAM+ G+   G    +  L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 95  FNVMPQKNDFSWNMLISGFA-KADLA-------------ALEYGKQIHSHI---LVN--- 134
           F  +P+ +++S+N L+   A  + LA             ++ Y   I SH    LV+   
Sbjct: 92  FRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR 151

Query: 135 -----GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
                  + D+V  + ++  Y + G    A  + N   E D    +AL+SGY   GKM++
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR +FDR      V WN M+SGY    +  EA  LF        + D  T  +V+S  + 
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA----APVRDVFTWTAVVSGYAQ 267

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
            G LE  ++V     +     + +  +A++  Y +R M  +A +LF+ +   +    NTM
Sbjct: 268 NGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTM 323

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           +T Y+  G +E+AK +F TMP K  +SW +M+   SQ G   E L LF  M +    +++
Sbjct: 324 LTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 383

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            + A V+S CA+I++LE G Q+  R+   G      +  +L+  Y KCG           
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +AL +F+ MR T  KP  IT   +L+AC H GLV++G
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             +F +M   + +  + EHY+CM+DL  RAG L EA +L++ MPFE D  MW ++L    
Sbjct: 504 ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASR 563

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  LGR  AE++ EL+PENA  Y+ LS+I+A+SG+W  +  +R +M E+ V K+PG 
Sbjct: 564 IHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGF 623

Query: 577 SW 578
           SW
Sbjct: 624 SW 625



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G QLH   ++ G       + N LL MY +CGN  DA   F+EM  R
Sbjct: 389 VLSTCADIAALECGMQLHGRLIRAGYGVGCF-VGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--ALEYG 124
           +  SWN MI G+ + G  +++L++F++M     + +D +   +++  + + L    + Y 
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
             +H      G+       + +++L G+ G    A+ ++  M  EPD     AL+
Sbjct: 508 YSMHHDF---GVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 303/602 (50%), Gaps = 66/602 (10%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           G L   +  +N+ +  +MR G   DA  LF  MPRR+  ++NAM+ G+   G    +  L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 95  FNVMPQKNDFSWNMLISGFA-KADLA-------------ALEYGKQIHSHI---LVN--- 134
           F  +P+ +++S+N L+   A  + LA             ++ Y   I SH    LV+   
Sbjct: 92  FRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR 151

Query: 135 -----GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
                  + D+V  + ++  Y + G    A  + N   E D    +AL+SGY   GKM++
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR +FDR      V WN M+SGY    +  EA  LF        + D  T  +V+S  + 
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA----APVRDVFTWTAVVSGYAQ 267

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
            G LE  ++V     +     + +  +A++  Y +R M  +A +LF+ +   +    NTM
Sbjct: 268 NGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTM 323

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           +T Y+  G +E+AK +F TMP K  +SW +M+   SQ G   E L LF  M +    +++
Sbjct: 324 LTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 383

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            + A V+S CA+I++LE G Q+  R+   G      +  +L+  Y KCG           
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +AL +F+ MR T  KP  IT   +L+AC H GLV++G
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             +F +M   + +  + EHY+CM+DL  RAG L EA +L++ MPFE D  MW ++L    
Sbjct: 504 ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASR 563

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  LGR  AE++ EL+PENA  Y+ LS+I+A+SG+W  +  +R +M E+ V K+PG 
Sbjct: 564 IHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGF 623

Query: 577 SW 578
           SW
Sbjct: 624 SW 625



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G QLH   ++ G       + N LL MY +CGN  DA   F+EM  R
Sbjct: 389 VLSTCADIAALECGMQLHGRLIRAGYGVGCF-VGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--ALEYG 124
           +  SWN MI G+ + G  +++L++F++M     + +D +   +++  + + L    + Y 
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
             +H      G+       + +++L G+ G    A+ ++  M  EPD     AL+
Sbjct: 508 YSMHHDF---GVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559


>gi|359475162|ref|XP_003631603.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Vitis vinifera]
          Length = 670

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 193/631 (30%), Positives = 323/631 (51%), Gaps = 74/631 (11%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           SI  G + H H +K GI  ST+  +N+L+ +Y + G   +A  LFDEMP RN F+WNA+I
Sbjct: 3   SIKDGFRFHAHAIKNGI-TSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAII 61

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD---------------------- 117
             ++K  + +++ +LF+  P K+  ++N ++SG+   D                      
Sbjct: 62  WAYIKTQNLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDETRI 121

Query: 118 --------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
                         L+   YGKQ+HS+++    +      SSL+++Y KCG F    QV 
Sbjct: 122 DEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVCQVF 181

Query: 164 NMMKEPDDFC-LSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEA 221
           +      D    +A+++     G++     +F R  + + V+ WN++ISGY+ N  + +A
Sbjct: 182 DGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDA 241

Query: 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281
           L LF  M  N V  +  T+A +LSAC+ L  L+ GK+VHG   K  +  +  ++S L+D 
Sbjct: 242 LKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGLVDV 301

Query: 282 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
           Y K G    A  +++ +   +   + +MI  +SS G + +A+ +F ++  KS I W ++ 
Sbjct: 302 YCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALF 361

Query: 342 VGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
            G  ++       +L      K  +  D   L SV+ ACA  ++L  G+Q+ A V  IG+
Sbjct: 362 TGYVKSQQCEAVFELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLRIGI 421

Query: 401 DSDQIISTSLVDFYCKCGY---------------------------------DALALFNE 427
           + D+ + +++VD Y K G                                   A+  F E
Sbjct: 422 ELDEKLVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEE 481

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M   GV+P  +TF A+LSAC HCGLV+ G+K+F +M   Y+I PEI+HY+CM+DL+ RA 
Sbjct: 482 MLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMT-DYNILPEIDHYACMIDLYGRAN 540

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
            L +AV  ++++P E D  +  + L  C  + +  L R+  E+++ ++ +N   Y+QL++
Sbjct: 541 QLEKAVAFMKRIPIEPDAVILGAFLNACRINRNTKLAREAEEKILRIEGDNGARYVQLAN 600

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           ++A  G+W +   IR  MRE  + K  GCSW
Sbjct: 601 VYAAEGKWVEMGRIRRKMRENEIKKFAGCSW 631



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 182/352 (51%), Gaps = 9/352 (2%)

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           + +++ G + H+H + NG+       + L++LY K G    A+++ + M E + F  +A+
Sbjct: 1   MRSIKDGFRFHAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAI 60

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI-SNNEDTEALLLFHKMR--RNGVL 234
           I  Y     +  AR +FD       V +NSM+SGYI ++  +T AL LF +M+   +   
Sbjct: 61  IWAYIKTQNLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDETR 120

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D  +L  +L+  + L    +GKQ+H +  K          S+L+D YSK G   + C++
Sbjct: 121 IDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVCQV 180

Query: 295 FSELK-VYDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSPIE 352
           F     V D +  N M+      G +E   ++F R +    ++SWN++I G  QNG   +
Sbjct: 181 FDGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEED 240

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL LF +M + ++R ++ ++A ++SACA + SL+LG++V   V    L  +  IS+ LVD
Sbjct: 241 ALKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGLVD 300

Query: 413 FYCKCGYDALA-LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
            YCKCG    A L      TG      + T+++      G + E ++ FD++
Sbjct: 301 VYCKCGNMKYAELVYATIGTG---NAFSITSMIVGHSSQGNMGEARRLFDSL 349



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 141/338 (41%), Gaps = 67/338 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C    S+ +GK++H   LK   L     I++ L+ +Y +CGN   A L++  +
Sbjct: 260 IAGLLSACAGLRSLKLGKEVHGWVLKYE-LGFNPFISSGLVDVYCKCGNMKYAELVYATI 318

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
              N FS  +MI G    G+  ++ +LF+ + +K+   W  L +G+ K            
Sbjct: 319 GTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLS 378

Query: 116 ----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                                 A  AAL  GKQIH+++L  G++ D  L S++V++Y K 
Sbjct: 379 EFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLVSAMVDMYSKS 438

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           G+   A ++   +   D    + + +GYA+ G  N                         
Sbjct: 439 GNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHEN------------------------- 473

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
                 +A+  F +M   GV  DA T  ++LSAC   G +E G++         ++ ++ 
Sbjct: 474 ------QAIQQFEEMLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMTDYNILPEID 527

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMI 310
             + ++D Y +      A      + +  D ++L   +
Sbjct: 528 HYACMIDLYGRANQLEKAVAFMKRIPIEPDAVILGAFL 565



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  +L +C    +++ GKQ+H + L+ GI L+  L  A  ++ MY + GN   A  +F  
Sbjct: 393 LISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLVSA--MVDMYSKSGNIKYAEKIFQR 450

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAAL- 121
           +  R+   +N M  G+   GH+ +++Q F  M ++    +  ++  L+S      L  L 
Sbjct: 451 VTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERGVRPDAVTFVALLSACRHCGLVELG 510

Query: 122 -EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALIS 179
            +Y   +  + ++  +D  +     +++LYG+      A   +  +  EPD   L A ++
Sbjct: 511 EKYFASMTDYNILPEIDHYAC----MIDLYGRANQLEKAVAFMKRIPIEPDAVILGAFLN 566

Query: 180 G---YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                 N     +A     R    +   +  + + Y +  +  E   +  KMR N +
Sbjct: 567 ACRINRNTKLAREAEEKILRIEGDNGARYVQLANVYAAEGKWVEMGRIRRKMRENEI 623


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 166/500 (33%), Positives = 275/500 (55%), Gaps = 35/500 (7%)

Query: 116 ADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            D  +L+ GK IH H+ + G    +++L + L+ +Y KCG    A +V + M   + +  
Sbjct: 57  GDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSW 116

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + ++SGY   G +  AR VFD   +   V WN+M+ GY  +    EAL  + + RR+G+ 
Sbjct: 117 NNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIK 176

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  + A +L+AC     L+  +Q HG     G + +V+++ +++D Y+K G    A + 
Sbjct: 177 FNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRC 236

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F E+ V D  +  T+I+ Y+  G +E A+ +F  MP K+ +SW ++I G  + GS   AL
Sbjct: 237 FDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRAL 296

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           DLF  M  L ++ ++F+ +S + A A+I+SL  G+++   +    +  + I+ +SL+D Y
Sbjct: 297 DLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMY 356

Query: 415 CKCG----------------------------------YDALALFNEMRNTGVKPTIITF 440
            K G                                  + AL + ++M    V+P   T 
Sbjct: 357 SKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTL 416

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             IL+AC H GLV+EG +WF++M  Q+ I P+ EHY+C++DL  RAGC  E +  IE+MP
Sbjct: 417 VVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMP 476

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
           FE D  +W++IL  C  HG++ LG+K A+ +I+LDPE++  YI LSSI+A  G+WE    
Sbjct: 477 FEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEK 536

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +M+++ V K    SW +
Sbjct: 537 LRGVMKKRRVNKEKAVSWIE 556



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 147/501 (29%), Positives = 234/501 (46%), Gaps = 68/501 (13%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D LA LLQ C    S+  GK +H H    G       ++N L+ MYM+CG P DA  +FD
Sbjct: 47  DLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFD 106

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---------- 115
           +M  RN +SWN M+ G++K G   ++  +F+ MP+++  SWN ++ G+A+          
Sbjct: 107 QMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWF 166

Query: 116 -----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 152
                                       L+  +Q H  +LV G   + VL  S+++ Y K
Sbjct: 167 YKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAK 226

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
           CG   SA +  + M   D    + LISGYA  G M  A ++F    + + V W ++I+GY
Sbjct: 227 CGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGY 286

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
           +       AL LF KM   GV  +  T +S L A +S+  L HGK++HG+  +  V  + 
Sbjct: 287 VRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNA 346

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
           IV S+L+D YSK G    + ++F                      RI D KH        
Sbjct: 347 IVISSLIDMYSKSGSLEASERVF----------------------RICDDKH-------- 376

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
             + WN+MI  L+Q+G   +AL +  +M K  ++ ++ +L  +++AC++   +E G + F
Sbjct: 377 DCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWF 436

Query: 393 ARVTII-GLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
             +T+  G+  DQ     L+D   + G     L  ++     +P    + AIL  C   G
Sbjct: 437 ESMTVQHGIVPDQEHYACLIDLLGRAGCFK-ELMRKIEEMPFEPDKHIWNAILGVCRIHG 495

Query: 452 LVKEGQKWFDAMKWQYHIDPE 472
             + G+K  D +     +DPE
Sbjct: 496 NEELGKKAADEL---IKLDPE 513



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 188/400 (47%), Gaps = 31/400 (7%)

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
            S +S + +  E ++A+     + + G+      LAS+L  C     L+ GK +H H   
Sbjct: 15  QSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKI 74

Query: 266 VGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
            G    + ++++ L+  Y K G P DACK+F ++ + +    N M++ Y   G +  A+ 
Sbjct: 75  TGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARV 134

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
           +F +MP + ++SWN+M++G +Q+G+  EAL  +    +  ++ ++FS A +++AC     
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQ 194

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTA 442
           L+L  Q   +V + G  S+ ++S S++D Y KCG    A   F+EM        I  +T 
Sbjct: 195 LQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEM----TVKDIHIWTT 250

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM--- 499
           ++S     G ++  +K F  M  +  +      ++ ++  + R G  N A++L  +M   
Sbjct: 251 LISGYAKLGDMEAAEKLFCEMPEKNPVS-----WTALIAGYVRQGSGNRALDLFRKMIAL 305

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKS 558
             + +   +SS L    +      G+++   MI  +   NA     L  +++ SG  E S
Sbjct: 306 GVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEAS 365

Query: 559 SLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLAN 598
             +  I  +KH               +C F +TM   LA 
Sbjct: 366 ERVFRICDDKH---------------DCVFWNTMISALAQ 390


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 196/613 (31%), Positives = 319/613 (52%), Gaps = 105/613 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C       VGKQ+H   +K G +   + +   L+ MYM+  +  D   +FDEM
Sbjct: 95  LSCVLKVCGCLFDRIVGKQVHCQCIKCGFVED-VSVGTSLVDMYMKTESVEDGERVFDEM 153

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             +N  SW +++ G+ + G  E++L+LF+ M     + N F++  ++ G A AD  A+E 
Sbjct: 154 RVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLA-AD-GAVEK 211

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+H+ ++ +GLD    +G+S+VN+Y K                      S ++S    
Sbjct: 212 GVQVHTMVIKSGLDSTIFVGNSMVNMYSK----------------------SLMVS---- 245

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                DA+ VFD   + ++V WNSMI+G+++N  D EA  LF++MR  GV    +  A+V
Sbjct: 246 -----DAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATV 300

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +  C+++  +   KQ+H    K G   D+ + +AL+  YSK                   
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSK------------------- 341

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                       C  I+DA  +F  M   ++++SW ++I G  QNG    A++LFC M +
Sbjct: 342 ------------CSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRR 389

Query: 363 LD-LRMDKFSLASVISACA-NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK---- 416
            + +  ++F+ +SV++ACA   +S+E G+Q  +     G  +   +S++LV  Y K    
Sbjct: 390 EEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNI 449

Query: 417 -----------------------------CGYDALALFNEMRNTGVKPTIITFTAILSAC 447
                                        CG  +L +F EMR+  ++   ITF  ++SAC
Sbjct: 450 ESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISAC 509

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV EGQ++FD M   YHI P +EHYSCMVDL++RAG L +A++LI +MPF A   +
Sbjct: 510 THAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATI 569

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L  C  H +  LG   AE++I L P+++ AY+ LS+I+AT+G W++ + +R +M  
Sbjct: 570 WRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDM 629

Query: 568 KHVGKLPGCSWAD 580
           K V K  G SW +
Sbjct: 630 KKVKKEAGYSWIE 642



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 217/514 (42%), Gaps = 104/514 (20%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122
           LFDE P++     N ++  F +    +++L LF  + +    +    +S   K      +
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFD 107

Query: 123 --YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              GKQ+H   +  G   D  +G+SLV++Y K                            
Sbjct: 108 RIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTES------------------------- 142

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
                 + D  RVFD     + V W S+++GY  N  + +AL LF +M+  G+  +  T 
Sbjct: 143 ------VEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTF 196

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A+VL   ++ G +E G QVH    K G+   + V +++++ YSK  M SDA         
Sbjct: 197 AAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA--------- 247

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                                 K +F +M N++ +SWNSMI G   NG  +EA +LF  M
Sbjct: 248 ----------------------KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
               +++ +   A+VI  CANI  +   +Q+  +V   G D D  I T+L+  Y KC   
Sbjct: 286 RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEI 345

Query: 418 ------------------------GY-------DALALFNEM-RNTGVKPTIITFTAILS 445
                                   GY        A+ LF +M R  GV+P   TF+++L+
Sbjct: 346 DDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLN 405

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC       E  K F +   +      +   S +V ++A+ G + E+ N + +   + D+
Sbjct: 406 ACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNI-ESANEVFKRQVDRDL 464

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERM----IELD 535
             W+S++ G   HG      K+ E M    +ELD
Sbjct: 465 VSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELD 498



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 35/231 (15%)

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           ++ +F   P + L   N ++   S+N    EAL+LF  + +     D  SL+ V+  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK------------------------- 416
           +    +G+QV  +    G   D  + TSLVD Y K                         
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 417 -CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
             GY        AL LF++M+  G+KP   TF A+L      G V++G +    M  +  
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           +D  I   + MV++++++  +++A  + + M     V  W+S++ G V +G
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVS-WNSMIAGFVTNG 273


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 194/609 (31%), Positives = 310/609 (50%), Gaps = 106/609 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            ++ L++C     +  GK++H   +K    ++   +   LL MY +CG    A  +F+++
Sbjct: 145 FSKALKACTELQDLDNGKKIHCQLVKVPSFDNV--VLTGLLDMYAKCGEIKSAHKVFNDI 202

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLAALEY 123
             RN   W +MI G++K    E+ L LFN M + N    ++++  LI    K  L+AL  
Sbjct: 203 TLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTK--LSALHQ 260

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK  H  ++ +G++  S L +SL+++Y KC                              
Sbjct: 261 GKWFHGCLVKSGIELSSCLVTSLLDMYVKC------------------------------ 290

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G +++ARRVF+  +    VMW +MI GY  N    EAL LF KM+   +  +  T+ASV
Sbjct: 291 -GDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASV 349

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LS C  +  LE G+ VHG + KVG+                                +DT
Sbjct: 350 LSGCGLIENLELGRSVHGLSIKVGI--------------------------------WDT 377

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
            + N ++ +Y+ C +  DAK++F     K +++WNS+I G SQNGS  EAL LF  MN  
Sbjct: 378 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE 437

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCG--- 418
            +  +  ++AS+ SACA++ SL +G  + A    +G    S   + T+L+DFY KCG   
Sbjct: 438 SVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQ 497

Query: 419 -----YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACD 448
                +D                         +L LF EM     KP   TFT+ILSAC 
Sbjct: 498 SARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACG 557

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H G+V EG+K+F +M   Y+  P  +HY+CMVD+ ARAG L +A+++IE+MP + DV  +
Sbjct: 558 HTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCF 617

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            + L GC  H    LG  V ++M++L P++A  Y+ +S+++A+ G W ++  +R++M+++
Sbjct: 618 GAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQR 677

Query: 569 HVGKLPGCS 577
            + K+ G S
Sbjct: 678 GLSKIAGHS 686



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 144/562 (25%), Positives = 245/562 (43%), Gaps = 111/562 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    S+   +Q H      G++   + IA +L+ +Y   G   DA L+FD++P  
Sbjct: 50  LLSKCTNIDSL---RQSHGVLTGNGLMGD-ISIATKLVSLYGFFGYTKDARLVFDQIPEP 105

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-----DLAALEYGK 125
           + + W  M+  +       + ++L++++  K+ F ++ ++  F+KA     +L  L+ GK
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLL-MKHGFRYDDIV--FSKALKACTELQDLDNGK 162

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +IH   LV    FD+V+                               L+ L+  YA CG
Sbjct: 163 KIHCQ-LVKVPSFDNVV-------------------------------LTGLLDMYAKCG 190

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++  A +VF+  T  + V W SMI+GY+ N+   E L+LF++MR N VL +  T  +++ 
Sbjct: 191 EIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIM 250

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ L  L  GK  HG   K G+     + ++LLD Y K G  S+A ++F+E    D ++
Sbjct: 251 ACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVM 310

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
              MI  Y                               + NGS  EAL LF  M  +++
Sbjct: 311 WTAMIVGY-------------------------------THNGSVNEALSLFQKMKGVEI 339

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           + +  ++ASV+S C  I +LELG  V      +G+  D  ++ +LV  Y KC        
Sbjct: 340 KPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAKY 398

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                     ++AL LF+ M +  V P  +T  ++ SAC   G 
Sbjct: 399 VFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGS 458

Query: 453 VKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           +  G      ++K  +     +   + ++D +A+ G    A  LI     E +   WS++
Sbjct: 459 LAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA-RLIFDTIEEKNTITWSAM 517

Query: 512 LRGCVAHGDKGLGRKVAERMIE 533
           + G    GD     ++ E M++
Sbjct: 518 IGGYGKQGDTIGSLELFEEMLK 539


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 199/618 (32%), Positives = 291/618 (47%), Gaps = 110/618 (17%)

Query: 40  TLP------IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQ 93
           TLP      + N LL  Y R G    A  LFD MP  N F+ NA++             +
Sbjct: 38  TLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDR 97

Query: 94  LFNVMPQKNDFSWNMLISGF---------------------------------------- 113
           LF  MPQ++  S+N LI+GF                                        
Sbjct: 98  LFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVM 157

Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
           A + L     G+Q+H  I+  G    +   S LV++Y K G    A +V + M   +   
Sbjct: 158 AASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVM 217

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
            + +I+G   C  + +AR VF+   D  S+ W +M++G   N   +EAL +F +MR  GV
Sbjct: 218 YNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGV 277

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
             D  T  S+L+AC +L   E GKQ+H +  +     ++ V SAL+D YSK         
Sbjct: 278 GIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSK--------- 328

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                                 C  I  A+ +FR M  K++ISW +MIVG  QNG   EA
Sbjct: 329 ----------------------CRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEA 366

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           + +F  M    ++ + F+L SVIS+CAN++SLE G Q      + GL     +S++LV  
Sbjct: 367 VRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTL 426

Query: 414 YCKCG-------------------YDALA--------------LFNEMRNTGVKPTIITF 440
           Y KCG                   Y AL               LF +M   GVKP  +TF
Sbjct: 427 YGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTF 486

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC   GLV++G  +F +M+  + I    +HY+CM+DL++R+G L EA   I QMP
Sbjct: 487 IGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMP 546

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
              D   W+++L  C   GD  +G+  AE +++ DP+N  +Y+ L S+ A+ GEW + +L
Sbjct: 547 RCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVAL 606

Query: 561 IRDIMREKHVGKLPGCSW 578
           +R  MR++ V K PGCSW
Sbjct: 607 LRRGMRDRQVKKEPGCSW 624



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 12/238 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G L   + +++ L+ +Y +CG+  DA  LFDEM
Sbjct: 385 LGSVISSCANLASLEEGAQFHCMALVSG-LRPYITVSSALVTLYGKCGSIEDAHRLFDEM 443

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P  +  S+ A++ G+ + G  ++++ LF  M  K    N  ++  ++S  +++ L  +E 
Sbjct: 444 PFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGL--VEK 501

Query: 124 G-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGY 181
           G    HS    +G+       + +++LY + G    A + +  M   PD    + L+S  
Sbjct: 502 GCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSAC 561

Query: 182 ANCGKMNDARRVFD---RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
              G M   +   +   +T   +   +  + S + S  E +E  LL   MR   V ++
Sbjct: 562 RLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKE 619


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 187/649 (28%), Positives = 324/649 (49%), Gaps = 85/649 (13%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGIL-------NSTLPIANRLLQMYMRCG 55
           T ++ L R   + N+  + H  K      ++K          +S +   N  +  YMR G
Sbjct: 14  TSLNGLKRRYNNANSASNFHSSKSSTQTQIQKSQTKPLPKSGDSDIKEWNVAISSYMRTG 73

Query: 56  NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK 115
             ++AL +F  MPR +  S+NAMI G+++ G  E +  LF+ MP+++  SWN++I G+ +
Sbjct: 74  RCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVR 133

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
                L   +++   +     + D    +++++ Y + G  + A +V + M E +D   +
Sbjct: 134 N--RNLGKARELFERMP----ERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWN 187

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           AL+S Y    K+ +A  +F    + + V WN ++ G++   +  EA   F  M+    + 
Sbjct: 188 ALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMK----VR 243

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  +  ++++  +  G ++  +Q+   +     + DV   +A++  Y +  M  +A +LF
Sbjct: 244 DVVSWNTIITGYAQNGEIDEARQLFDES----PVHDVFTWTAMVSGYIQNRMVEEARELF 299

Query: 296 SEL-------------------------KVYDTI------LLNTMITVYSSCGRIEDAKH 324
             +                         +++D +        NTMIT Y+ CG+I +AK+
Sbjct: 300 DRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKN 359

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
           +F  MP +  +SW +MI G SQ+G   EAL LF  M +   R+++ S +S +S CA++ +
Sbjct: 360 LFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVA 419

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------------- 418
           LELG+Q+  R+   G ++   +  +L+  YCKCG                          
Sbjct: 420 LELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAG 479

Query: 419 -------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                   +AL  F  M+  G+KP   T  A+LSAC H GLV +G+++F  M   Y + P
Sbjct: 480 YSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRP 539

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
             +HY+CMVDL  RAG L EA NL++ MPFE D  +W ++L     HG+  L    A+++
Sbjct: 540 NSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKI 599

Query: 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             ++PEN+  Y+ LS+++A+SG W     +R  MR+K V K+PG SW +
Sbjct: 600 FAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 648



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/425 (21%), Positives = 187/425 (44%), Gaps = 49/425 (11%)

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
           D+   +  + +Y + G  S+A ++F  +  + ++  N MI+ Y   G  E A+ +F  MP
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP 117

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
            + L+SWN MI G  +N +  +A +LF  M + D+     S  +++S  A    ++   +
Sbjct: 118 ERDLVSWNVMIKGYVRNRNLGKARELFERMPERDV----CSWNTILSGYAQNGCVDDARR 173

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACD 448
           VF R+     + + +   +L+  Y +     +A  LF    N      ++++  +L    
Sbjct: 174 VFDRMP----EKNDVSWNALLSAYVQNSKLEEACVLFGSRENW----ALVSWNCLLGGFV 225

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
               + E +++FD+MK +     ++  ++ ++  +A+ G ++EA  L ++ P   DV  W
Sbjct: 226 KKKKIVEARQFFDSMKVR-----DVVSWNTIITGYAQNGEIDEARQLFDESPVH-DVFTW 279

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           ++++ G + +      R++ +RM E    N  ++  + + +      E +  + D+M  +
Sbjct: 280 TAMVSGYIQNRMVEEARELFDRMPE---RNEVSWNAMLAGYVQGERVEMAKELFDVMPCR 336

Query: 569 HVGKLPGCSWADGIAFNCWFLDTMFLQLAN-------FDEIKQHQSADFCDYIHGFDQAR 621
           +V      +W   I        T + Q          FD++ +     +   I G+ Q+ 
Sbjct: 337 NV-----STWNTMI--------TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG 383

Query: 622 LPLSSKRSFVL----GYLLSTLSLKVVYSNLCSSLVVPTRNELAYLLIRMVY--GNILTI 675
               + R FVL    G  L+  S     S     + +    +L   L++  Y  G  +  
Sbjct: 384 HSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGN 443

Query: 676 ALLLL 680
           ALLL+
Sbjct: 444 ALLLM 448



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 172/394 (43%), Gaps = 40/394 (10%)

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           ++ D+    WN  IS Y+     +EAL +F +M R          +SV       G+L +
Sbjct: 53  KSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPR---------WSSVSYNAMISGYLRN 103

Query: 256 GK-QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
           G+ ++           D++  + ++  Y +      A +LF  +   D    NT+++ Y+
Sbjct: 104 GEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYA 163

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
             G ++DA+ +F  MP K+ +SWN+++    QN    EA  LF +     L     S   
Sbjct: 164 QNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL----VSWNC 219

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTG 432
           ++        +    Q F  + +     D +   +++  Y + G   +A  LF+E     
Sbjct: 220 LLGGFVKKKKIVEARQFFDSMKV----RDVVSWNTIITGYAQNGEIDEARQLFDE----- 270

Query: 433 VKPT--IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
             P   + T+TA++S      +V+E ++ FD M  +  +      ++ M+  + +   + 
Sbjct: 271 -SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVS-----WNAMLAGYVQGERVE 324

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
            A  L + MP   +V  W++++ G    G     + + ++M + DP +  A I   + ++
Sbjct: 325 MAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMI---AGYS 380

Query: 551 TSGE-WEKSSLIRDIMREKHVGKLPGCSWADGIA 583
            SG  +E   L   ++ E+  G+L   S++  ++
Sbjct: 381 QSGHSYEALRLF--VLMEREGGRLNRSSFSSALS 412


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 197/651 (30%), Positives = 327/651 (50%), Gaps = 84/651 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLK-KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           + ++C+   S+ +G+QLH   +K +  LN  + ++N L+ MY +CG+  DA  +  +MP 
Sbjct: 166 VFKACSGLGSVELGRQLHGLVIKFRFCLN--IYVSNALIDMYGKCGSLDDAKKVLVKMPE 223

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAK--------- 115
           R+  +WN++I      G   ++L+    M        N  SW+ +I GFA+         
Sbjct: 224 RDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIE 283

Query: 116 ------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
                                   A L  L+ GKQ+H +I  +    + V+ ++LV++Y 
Sbjct: 284 MLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYR 343

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD----RTTDTSSVMWNS 207
           +CGD   A ++       +    + +I GY   G ++ A+ +FD       +   + WNS
Sbjct: 344 RCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNS 403

Query: 208 MISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           +ISGY+ N    EA  +F  M    G+  D+ TL SVL+AC+    L  GK++H  A   
Sbjct: 404 IISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVK 463

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G+  D  V  AL++ YSK    + A   F E+   D    N +I+ Y+   +IE  +++ 
Sbjct: 464 GLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLL 523

Query: 327 RTMP----NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             M     + ++ +WNS++ GL +N      + LF  M    LR D +++  ++ AC+ +
Sbjct: 524 EKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRL 583

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD-------------- 420
           ++LE G+Q  A     G D+D  I  +LVD Y KCG        YD              
Sbjct: 584 ATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAML 643

Query: 421 -----------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                       ++LF  M   G  P  +TF ++LS+C H G V+ G ++FD M + Y++
Sbjct: 644 TACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMGY-YNV 702

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P ++HY+ MVDL +R+G L+EA  LI++MP E D  +W ++L GCV HG+  LG   AE
Sbjct: 703 KPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAE 762

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           R+IEL+P N+  Y+ L+++ A +  W   + +R +M+++ + K PGCSW +
Sbjct: 763 RLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKDRGMHKSPGCSWIE 813



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 160/527 (30%), Positives = 269/527 (51%), Gaps = 32/527 (6%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L SC       +GKQ+H H +K G  ++   I  +LLQMY RCG   DA  LF+ MP
Sbjct: 66  ASVLDSCKCPK---LGKQVHAHTIKTG-FDADGFIDTKLLQMYARCGLLKDADFLFETMP 121

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYG 124
            RN  SW A++  ++  G  E++  LF V+     + + F + ++    A + L ++E G
Sbjct: 122 MRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFK--ACSGLGSVELG 179

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +Q+H  ++      +  + ++L+++YGKCG  + A +VL  M E D    +++I+  A  
Sbjct: 180 RQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAAN 239

Query: 185 GKMNDARRVFDRTTD-----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           G + +A    ++         + V W+++I G+  N  D EA+ +  +M+  G++ +A T
Sbjct: 240 GMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQT 299

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           LA VL AC+ L  L+ GKQ+HG+  +   I + +V +AL+D Y + G    A K+F +  
Sbjct: 300 LAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFS 359

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSPIEALD 355
           V + +  NTMI  Y   G +  AK +F  M      + LISWNS+I G  +N    EA  
Sbjct: 360 VKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFS 419

Query: 356 LFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +F NM  +  +  D F+L SV++ACA+  SL  G+++ A+  + GL SD  +  +LV+ Y
Sbjct: 420 MFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMY 479

Query: 415 CKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ-YHIDP 471
            KC     A   F+E+    ++  + T+ A++S       ++  Q   + MK   YH  P
Sbjct: 480 SKCQDLTAAQVAFDEV----MEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYH--P 533

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM---PFEADVGMWSSILRGC 515
            I  ++ ++        L+  + L  +M       D+     IL  C
Sbjct: 534 NIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPAC 580



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/494 (26%), Positives = 225/494 (45%), Gaps = 79/494 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C     + +GKQLH +  +   +++ + + N L+ +Y RCG+   A  +F + 
Sbjct: 300 LAGVLPACARLQRLDLGKQLHGYITRHDFISNPV-VVNALVDVYRRCGDMGGAAKIFLKF 358

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK-------- 115
             +N  S N MI G+ + G   K+ +LF+ M     ++   SWN +ISG+ +        
Sbjct: 359 SVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAF 418

Query: 116 --------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 149
                                     AD  +L  GK+IH+  +V GL  D+ +G +LV +
Sbjct: 419 SMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEM 478

Query: 150 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSSVMW 205
           Y KC D  +A    + + E D    +ALISGY    ++   + + ++        +   W
Sbjct: 479 YSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTW 538

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
           NS+++G + N +    + LF +M+ + +  D  T+  +L ACS L  LE GKQ H H+ K
Sbjct: 539 NSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIK 598

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
            G   DV + +AL+D Y+K                               CG ++ A+  
Sbjct: 599 CGYDTDVHIGAALVDMYAK-------------------------------CGSLKYAQLA 627

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           +  + N +L+S N+M+   + +G   E + LF  M  L    D  +  SV+S+C ++ S+
Sbjct: 628 YDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSV 687

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAI 443
           E G + F  +    +       TS+VD   + G  ++A  L  +M    V+   + + A+
Sbjct: 688 ETGCEFFDLMGYYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMP---VECDSVLWGAL 744

Query: 444 LSACDHCGLVKEGQ 457
           L  C   G ++ G+
Sbjct: 745 LGGCVTHGNIELGE 758



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 156/368 (42%), Gaps = 74/368 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    S+  GK++H   + KG+ + T  +   L++MY +C + T A + FDE+
Sbjct: 437 LGSVLTACADTISLRQGKEIHAQAIVKGLQSDTF-VGGALVEMYSKCQDLTAAQVAFDEV 495

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK-------- 115
             ++  +WNA+I G+ +    E+   L   M       N ++WN +++G  +        
Sbjct: 496 MEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTM 555

Query: 116 -------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
                                    + LA LE GKQ H+H +  G D D  +G++LV++ 
Sbjct: 556 QLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDM- 614

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
                                         YA CG +  A+  +DR ++ + V  N+M++
Sbjct: 615 ------------------------------YAKCGSLKYAQLAYDRISNPNLVSHNAMLT 644

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
               +    E + LF  M   G + D  T  SVLS+C  +G +E G +         V  
Sbjct: 645 ACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMGYYNVKP 704

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIE----DAKHI 325
            +   ++++D  S+ G   +A +L  ++ V  D++L   ++    + G IE     A+ +
Sbjct: 705 TLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAERL 764

Query: 326 FRTMPNKS 333
               PN S
Sbjct: 765 IELEPNNS 772



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 44/250 (17%)

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------- 419
           ASV+ +C      +LG+QV A     G D+D  I T L+  Y +CG              
Sbjct: 66  ASVLDSC---KCPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPM 122

Query: 420 --------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                               +A  LF  ++  GV+     F  +  AC   G V+ G++ 
Sbjct: 123 RNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQL 182

Query: 460 FD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
               +K+++ ++  +   + ++D++ + G L++A  ++ +MP E D   W+S++  C A+
Sbjct: 183 HGLVIKFRFCLNIYVS--NALIDMYGKCGSLDDAKKVLVKMP-ERDSVTWNSVITACAAN 239

Query: 519 GDKGLGRKVAERMIELD--PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
           G      +  E+M  LD    N  ++  +   FA +G  E++  I  + R +  G +P  
Sbjct: 240 GMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEA--IEMLFRMQVEGLVPNA 297

Query: 577 SWADGIAFNC 586
               G+   C
Sbjct: 298 QTLAGVLPAC 307


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 191/612 (31%), Positives = 312/612 (50%), Gaps = 100/612 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC-GNPTDALLLFDE 66
            A   ++C+T   + VG  +    +K G L S + +   L+ M+++  G+   A  +F++
Sbjct: 171 FAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEK 230

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALE 122
           MP RN  +W  MI   M+ G+  +++ LF  M     + + F+ + +IS  A  +L  L 
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLL- 289

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+Q+HS  + +GL  D  +G  L+N+Y KC                            +
Sbjct: 290 -GQQLHSQAIRHGLTLDRCVGCCLINMYAKC----------------------------S 320

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN-EDTEALLLFHKMRRNGVLEDASTLA 241
             G M  AR++FD+  D +   W +MI+GY+     D EAL LF  M    V+ +  T +
Sbjct: 321 VDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFS 380

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           S L AC++L  L  G+QV  HA K+G                           FS +   
Sbjct: 381 STLKACANLAALRIGEQVFTHAVKLG---------------------------FSSVNC- 412

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
              + N++I++Y+  GRI+DA+  F  +  K+LIS+N++I   ++N +  EAL+LF  + 
Sbjct: 413 ---VANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE 469

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
              +    F+ AS++S  A+I ++  GEQ+ ARV   GL  +Q +  +L+  Y +CG   
Sbjct: 470 DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIE 529

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                           AL LF++M   GV+P ++T+ A+LSAC 
Sbjct: 530 SAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACS 589

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV EG K F +M  ++ + P +EHY+CMVD+  R+G L+EA+  I  MP++AD  +W
Sbjct: 590 HVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVW 649

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            + L  C  HG+  LG+  A+ +IE +P +  AYI LS+++A++ +W++ S IR  M+EK
Sbjct: 650 RTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEK 709

Query: 569 HVGKLPGCSWAD 580
           ++ K  GCSW +
Sbjct: 710 NLIKEAGCSWVE 721



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/524 (24%), Positives = 206/524 (39%), Gaps = 134/524 (25%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           + + G  +H  +  + L  DSV  +SL++LY KCG +  A  +  +M    D        
Sbjct: 81  SFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDL------- 133

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                                  + W++M+S + +NN    ALL F  M  NG   +   
Sbjct: 134 -----------------------ISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYC 170

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSK-RGMPSDACKLFSE 297
            A+   ACS+  F+  G  + G   K G +  DV V   L+D + K RG       L S 
Sbjct: 171 FAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRG------DLVSA 224

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
            KV                         F  MP ++ ++W  MI  L Q G   EA+DLF
Sbjct: 225 FKV-------------------------FEKMPERNAVTWTLMITRLMQFGYAGEAIDLF 259

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M       D+F+L+ VISACAN+  L LG+Q+ ++    GL  D+ +   L++ Y KC
Sbjct: 260 LEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKC 319

Query: 418 -----------------------------------GYD--ALALFNEMRNTGVKPTIITF 440
                                              GYD  AL LF  M  T V P   TF
Sbjct: 320 SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTF 379

Query: 441 TAILSACDHCGLVKEGQKWF-----------------------------DAMK-WQYHID 470
           ++ L AC +   ++ G++ F                             DA K +    +
Sbjct: 380 SSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFE 439

Query: 471 PEIEHYSCMVDLFARAGCLNEAVNL---IEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
             +  Y+ ++D +A+     EA+ L   IE     A    ++S+L G  + G  G G ++
Sbjct: 440 KNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQI 499

Query: 528 AERMIELDPE-NACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
             R+I+   + N      L S+++  G  E +  + + M +++V
Sbjct: 500 HARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNV 543


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 194/614 (31%), Positives = 293/614 (47%), Gaps = 103/614 (16%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ +L  LL +C    +   GK +H   L+ GI  S   +AN L+ MY RCG+  +A  +
Sbjct: 431 RVTFL-HLLSACANSSAYADGKMIHEDILRSGI-KSNGHLANALMNMYRRCGSLMEAQNV 488

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLA 119
           F+    R+  SWN+MI G  + G  E + +LF  M     + ++ ++  ++SG    +  
Sbjct: 489 FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE-- 546

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           ALE GKQIH  I  +GL  D  LG++L+N+Y +                           
Sbjct: 547 ALELGKQIHGRITESGLQLDVNLGNALINMYIR--------------------------- 579

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               CG + DAR VF        + W +MI G     ED +A+ LF +M+  G     ST
Sbjct: 580 ----CGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKST 635

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            +S+L  C+S   L+ GK+V              +A  L   Y                 
Sbjct: 636 FSSILKVCTSSACLDEGKKV--------------IAYILNSGYE---------------- 665

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             DT + N +I+ YS  G + DA+ +F  MP++ ++SWN +I G +QNG    A++    
Sbjct: 666 -LDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQ 724

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M + D+  +KFS  S+++AC++ S+LE G++V A +    L  D  +  +L+  Y KCG 
Sbjct: 725 MQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGS 784

Query: 420 D---------------------------------ALALFNEMRNTGVKPTIITFTAILSA 446
                                             AL  FN M   G+KP   TFT+ILSA
Sbjct: 785 QGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSA 844

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C+H GLV EG + F +M+ +Y + P IEHY C+V L  RA    EA  LI QMPF  D  
Sbjct: 845 CNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAA 904

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C  HG+  L    A   ++L+  N   YI LS+++A +G W+  + IR +M 
Sbjct: 905 VWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVME 964

Query: 567 EKHVGKLPGCSWAD 580
            + + K PG SW +
Sbjct: 965 GRGIRKEPGRSWIE 978



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 144/575 (25%), Positives = 264/575 (45%), Gaps = 109/575 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R  Y+A LLQ+C     +   K++H   ++  +    + ++N L+ MY++C +  DA  +
Sbjct: 27  RATYVA-LLQNCTRKRLLPEAKRIHAQMVEAWV-GPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSW-NMLISGFAKADL 118
           F EMPRR+  SWN++I  + + G K+K+ QLF  M       N  ++ ++L + ++ A+ 
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE- 143

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             LE GK+IHS I+  G   D  + +SL+++YGKCGD                       
Sbjct: 144 --LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD----------------------- 178

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                   +  AR+VF   +    V +N+M+  Y       E L LF +M   G+  D  
Sbjct: 179 --------LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKV 230

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T  ++L A ++   L+ GK++H    + G+  D+ V +AL                    
Sbjct: 231 TYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTAL-------------------- 270

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                      +T+   CG ++ AK  F+   ++ ++ +N++I  L+Q+G  +EA + + 
Sbjct: 271 -----------VTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M    + +++ +  S+++AC+   +LE G+ + + ++  G  SD  I  +L+  Y +CG
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCG 379

Query: 419 ---------------------------------YDALALFNEMRNTGVKPTIITFTAILS 445
                                             +A+ L+ +M++ GVKP  +TF  +LS
Sbjct: 380 DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC +     +G+   + +  +  I       + +++++ R G L EA N+ E      DV
Sbjct: 440 ACANSSAYADGKMIHEDI-LRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DV 497

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMI--ELDPEN 538
             W+S++ G   HG      K+ + M   EL+P+N
Sbjct: 498 ISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 139/573 (24%), Positives = 248/573 (43%), Gaps = 110/573 (19%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ Y+  LL +  T   +  GK++H   +++G LNS + +   L+ M +RCG+   A   
Sbjct: 229 KVTYI-NLLDAFTTPSMLDEGKRIHKLTVEEG-LNSDIRVGTALVTMCVRCGDVDSAKQA 286

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
           F     R+   +NA+I    + GH  ++ + +  M       N  ++  +++  + +   
Sbjct: 287 FKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSK-- 344

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           ALE GK IHSHI  +G   D  +G+                               ALIS
Sbjct: 345 ALEAGKLIHSHISEDGHSSDVQIGN-------------------------------ALIS 373

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            YA CG +  AR +F        + WN++I+GY    +  EA+ L+ +M+  GV     T
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
              +LSAC++      GK +H    + G+  +  +A+AL++ Y + G   +A  +F   +
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             D I  N+MI  ++  G  E A  +F+ M N+                           
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNE--------------------------- 526

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
               +L  D  + ASV+S C N  +LELG+Q+  R+T  GL  D  +  +L++ Y +CG 
Sbjct: 527 ----ELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGS 582

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF +M+N G +P   TF++IL  
Sbjct: 583 LQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKV 642

Query: 447 CDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           C     + EG+K     +   Y +D  +   + ++  ++++G + +A  + ++MP   D+
Sbjct: 643 CTSSACLDEGKKVIAYILNSGYELDTGVG--NALISAYSKSGSMTDAREVFDKMP-SRDI 699

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
             W+ I+ G   +   GLG+   E   ++  ++
Sbjct: 700 VSWNKIIAG---YAQNGLGQTAVEFAYQMQEQD 729



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 185/406 (45%), Gaps = 14/406 (3%)

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           PD F  + LI+ Y  C  + DA +VF        + WNS+IS Y       +A  LF +M
Sbjct: 60  PDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM 119

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
           +  G + +  T  S+L+AC S   LE+GK++H    K G   D  V ++LL  Y K G  
Sbjct: 120 QNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDL 179

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
             A ++F+ +   D +  NTM+ +Y+    +++   +F  M ++ +       + L    
Sbjct: 180 PRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAF 239

Query: 349 SPIEALDLFCNMNKLD----LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
           +    LD    ++KL     L  D     ++++ C     ++  +Q F        D D 
Sbjct: 240 TTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTA----DRDV 295

Query: 405 IISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
           ++  +L+    + G+  +A   +  MR+ GV     T+ +IL+AC     ++ G+     
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH 355

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           +    H   +++  + ++ ++AR G L +A  L   MP + D+  W++I+ G     D+G
Sbjct: 356 ISEDGH-SSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRG 413

Query: 523 LGRKVAERM-IELDPENACAYIQLSSIFATSGEWEKSSLI-RDIMR 566
              ++ ++M  E        ++ L S  A S  +    +I  DI+R
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR 459



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 122/291 (41%), Gaps = 43/291 (14%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           + +T  ++L  C+    L   K++H    +  V  D+ +++ L++ Y K     DA ++F
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            E+   D I  N++I+ Y+  G  + A  +F  M N   I                    
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIP------------------- 126

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
                       +K +  S+++AC + + LE G+++ +++   G   D  +  SL+  Y 
Sbjct: 127 ------------NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYG 174

Query: 416 KCG--YDALALFNEMRNTGVKPT-IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
           KCG    A  +F      G+ P  ++++  +L        VKE    F  M  +  I P+
Sbjct: 175 KCGDLPRARQVF-----AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSE-GISPD 228

Query: 473 IEHYSCMVDLFARAGCLNEAV---NLIEQMPFEADVGMWSSILRGCVAHGD 520
              Y  ++D F     L+E      L  +    +D+ + ++++  CV  GD
Sbjct: 229 KVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGD 279


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 194/630 (30%), Positives = 320/630 (50%), Gaps = 82/630 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + ++C    S+  G+  H   L  G +++   + N L+ MY RC + +DA  +FDEM   
Sbjct: 133 VFKACGEISSVRCGESAHALSLVTGFISNVF-VGNALVAMYSRCRSLSDARKVFDEMSVW 191

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN----MLISGFAK-ADLAALEYGK 125
           +  SWN++IE + KLG  + +L++F+ M   N+F        L++     A L     GK
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRM--TNEFGCRPDNITLVNVLPPCASLGTHSLGK 249

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H   + + +  +  +G+ LV++Y KCG  + AN V + M   D    +A+++GY+  G
Sbjct: 250 QLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIG 309

Query: 186 KMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           +  DA R+F++  +       V W++ ISGY       EAL +  +M  +G+  +  TL 
Sbjct: 310 RFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 369

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           SVLS C+S+G L HGK++H +A K  +               K G   +           
Sbjct: 370 SVLSGCASVGALMHGKEIHCYAIKYPI------------DLRKNGHGDE----------- 406

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCN 359
             +++N +I +Y+ C +++ A+ +F ++  K   +++W  MI G SQ+G   +AL+L   
Sbjct: 407 -NMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSE 465

Query: 360 MNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ-----IISTSLVD 412
           M + D   R + F+++  + ACA++++L +G+Q+ A      L + Q      +S  L+D
Sbjct: 466 MFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA----YALRNQQNAVPLFVSNCLID 521

Query: 413 FYCKCGY---------------------------------DALALFNEMRNTGVKPTIIT 439
            Y KCG                                  +AL +F+EMR  G K   +T
Sbjct: 522 MYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVT 581

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
              +L AC H G++ +G ++F+ MK  + + P  EHY+C+VDL  RAG LN A+ LIE+M
Sbjct: 582 LLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEM 641

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           P E    +W + L  C  HG   LG   AE++ EL   +  +Y  LS+++A +G W+  +
Sbjct: 642 PMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVT 701

Query: 560 LIRDIMREKHVGKLPGCSWADGIAFNCWFL 589
            IR +MR K V K PGCSW +GI     F 
Sbjct: 702 RIRSLMRHKGVKKRPGCSWVEGIKGTTTFF 731



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 50/364 (13%)

Query: 175 SALISGYANCGKMNDARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
           S LIS Y + G ++ A  +  R   +D     WNS+I  Y  N    + L LF  M    
Sbjct: 63  SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLS 122

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
              D  T   V  AC  +  +  G+  H  +   G I +V V +AL+  YS+    SDA 
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDAR 182

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
           K+F E+ V+D +  N++I  Y+  G+                               P  
Sbjct: 183 KVFDEMSVWDVVSWNSIIESYAKLGK-------------------------------PKV 211

Query: 353 ALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           AL++F  M N+   R D  +L +V+  CA++ +  LG+Q+        +  +  +   LV
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLV 271

Query: 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
           D Y KCG   +A  +F+   N  VK  ++++ A+++     G  ++  + F+ M+ +  I
Sbjct: 272 DMYAKCGMMDEANTVFS---NMSVK-DVVSWNAMVAGYSQIGRFEDAVRLFEKMQ-EEKI 326

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQM------PFEADVGMWSSILRGCVAHGDKGL 523
             ++  +S  +  +A+ G   EA+ +  QM      P E  +    S+L GC + G    
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL---ISVLSGCASVGALMH 383

Query: 524 GRKV 527
           G+++
Sbjct: 384 GKEI 387


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 203/608 (33%), Positives = 295/608 (48%), Gaps = 98/608 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L  C +   I+ G QLH   +  G L    P+AN LL MY +CG+  DA  LFD M
Sbjct: 251 FACVLSVCASEIMINFGSQLHGLVVSSG-LEMDSPVANTLLAMYAKCGHLFDARRLFDMM 309

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
           P+ +  +WN MI G+++ G  +++  LF+ M        ++  S F    ++ A L  GK
Sbjct: 310 PKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGK 369

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +IH +I+ NG+  D  L S+L+++Y KC D   A ++ +     D    +A+ISGY   G
Sbjct: 370 EIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNG 429

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
             N+A  +F          W                 LL  +MR N V     TLASVL 
Sbjct: 430 MNNNALEIFR---------W-----------------LLQERMRANSV-----TLASVLP 458

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ L  L  GK++HGH  K G      V SA++D Y+K G    A + F  +   D + 
Sbjct: 459 ACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVC 518

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N+MIT  S  G+ E                               EA+DLF  M     
Sbjct: 519 WNSMITSCSQNGKPE-------------------------------EAIDLFRQMGMAGT 547

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           + D  S+++ +SACAN+ +L  G+++ A +      SD    ++L+D Y KCG       
Sbjct: 548 KYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACR 607

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      D+L LF+ M   G++P  +TF AI+SAC H G 
Sbjct: 608 VFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQ 667

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V EG  +F  M  +  I   +EHY+CMVDLF RAG LNEA  +I  MPF  D G+W ++L
Sbjct: 668 VDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLL 727

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  HG+  L    +  + +LDP+N+  Y+ LS++ A +G+WE    IR +M+E+ V K
Sbjct: 728 GACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQK 787

Query: 573 LPGCSWAD 580
           +PGCSW D
Sbjct: 788 VPGCSWID 795



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 153/627 (24%), Positives = 251/627 (40%), Gaps = 147/627 (23%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D+    L  +LQ+C     +  G+Q H   L  GI  + + +  +LL MY+ CG   DA 
Sbjct: 43  DSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGI-LGTKLLGMYVLCGAFLDAK 101

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAK 115
            +F ++       WN MI GF  +G  + +L  +        +P K  F + +   G   
Sbjct: 102 NIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACG--- 158

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---------------------------- 147
             L ++  G+ +H  I   G + D  +GSSL+                            
Sbjct: 159 -GLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWN 217

Query: 148 ---NLYGKCGDFNSANQVLNMMK------------------------------------- 167
              N Y K GD+++A  V   M+                                     
Sbjct: 218 VMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSS 277

Query: 168 --EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
             E D    + L++ YA CG + DARR+FD    T  V WN MISGY+ N    EA  LF
Sbjct: 278 GLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLF 337

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           H+M    +  D+ T +S L   S    L  GK++H +  + GV  DV + SAL+D Y K 
Sbjct: 338 HEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFK- 396

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                                         C  +E A+ IF       ++   +MI G  
Sbjct: 397 ------------------------------CRDVEMARKIFDQRTPVDIVVCTAMISGYV 426

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
            NG    AL++F  + +  +R +  +LASV+ ACA +++L LG+++   +   G      
Sbjct: 427 LNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCY 486

Query: 406 ISTSLVDFYCKCGY---------------------------------DALALFNEMRNTG 432
           + ++++D Y KCG                                  +A+ LF +M   G
Sbjct: 487 VGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAG 546

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
            K   ++ +A LSAC +   +  G++   A   +     ++   S ++D++++ G L+ A
Sbjct: 547 TKYDCVSISAALSACANLPALHYGKE-IHAFMMRGAFRSDLFAESALIDMYSKCGNLDLA 605

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHG 519
             + + M  + +V  W+SI+     HG
Sbjct: 606 CRVFDTMEEKNEVS-WNSIIAAYGNHG 631


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 199/605 (32%), Positives = 307/605 (50%), Gaps = 74/605 (12%)

Query: 44  ANRLLQMYMRCG--NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK 101
           A+RLL+        N   +  +F  +   N F  N M++G+M+     K++ ++  M + 
Sbjct: 61  ASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLES 120

Query: 102 N----DFSWNMLISGFAKADLAALEY-GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
           N    ++++ +L   F    +   E+ GK I  H+L  G D D  + ++L+N+Y  CG+ 
Sbjct: 121 NVAADNYTYPIL---FQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNL 177

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-------------- 202
           + A +V +     D    +++++GY   G + +A+ V+DR  + +               
Sbjct: 178 SDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKG 237

Query: 203 -----------------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                            V W+++IS Y  N    EAL+LF +M  NG++ D   + SVLS
Sbjct: 238 NVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLS 297

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS L  +  GK VHG   KVG+   V + +AL+  YS       A KLFSE    D I 
Sbjct: 298 ACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQIS 357

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N+MI+ Y  CG IE A+ +F +MP+K  +SW++MI G +Q     E L LF  M     
Sbjct: 358 WNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGT 417

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           + D+  L SVISAC ++++L+ G+ + A +   GL  + I+ T+L++ Y K G       
Sbjct: 418 KPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALE 477

Query: 419 ------------YDALAL--------------FNEMRNTGVKPTIITFTAILSACDHCGL 452
                       ++AL L              F+EM+  GV P  ITF A+L AC H GL
Sbjct: 478 VFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGL 537

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V EG + F++M  ++ I P I+HY CMVDL  RAG L EA  LIE MP   DV  W ++L
Sbjct: 538 VDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALL 597

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  +GD   G ++  +++EL P++    + LS+I+A+ G W     +R +MR+  V K
Sbjct: 598 GACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVK 657

Query: 573 LPGCS 577
            PGCS
Sbjct: 658 TPGCS 662



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 126/281 (44%), Gaps = 65/281 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+    +  GK +H   +K GI  + + + N L+ MY  C     A  LF E    
Sbjct: 295 VLSACSRLLVVITGKLVHGLVVKVGI-ETYVNLQNALIHMYSSCEEVVTAQKLFSESCCL 353

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------------- 117
           +  SWN+MI G++K G  EK+  LF+ MP K++ SW+ +ISG+A+ D             
Sbjct: 354 DQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQ 413

Query: 118 --------------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
                               LAAL+ GK IH++I  NGL  + +LG++L+N+Y K G   
Sbjct: 414 IEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLG--- 470

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
                          C+              DA  VF    +     WN++I G   N  
Sbjct: 471 ---------------CVE-------------DALEVFKGLEEKGVSTWNALILGLAMNGL 502

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
             ++L  F +M+ +GV  +  T  +VL AC  +G ++ G +
Sbjct: 503 VDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHR 543



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 10/236 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C    ++  GK +H +  K G L   + +   L+ MYM+ G   DAL +F  +
Sbjct: 424 LVSVISACTHLAALDQGKWIHAYIRKNG-LKINIILGTTLINMYMKLGCVEDALEVFKGL 482

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             +   +WNA+I G    G  +KSL+ F+ M +     N+ ++  ++       L   E 
Sbjct: 483 EEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVD-EG 541

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYA 182
            +  +S I  + +  +      +V+L G+ G    A +++  M   PD     AL+    
Sbjct: 542 HRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACK 601

Query: 183 NCGKMNDARRVFDRTTDTSSVM--WNSMISG-YISNNEDTEALLLFHKMRRNGVLE 235
             G      R+  +  +       +N ++S  Y S     + L +   MR++GV++
Sbjct: 602 KYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVK 657


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 194/614 (31%), Positives = 296/614 (48%), Gaps = 103/614 (16%)

Query: 4    RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            R+ +L  LL +C    +   GK +H   L+ GI  S   +AN L+ MY RCG+  +A  +
Sbjct: 486  RVTFL-HLLSACTNSSAYSDGKMIHEDILRSGI-KSNGHLANALMNMYRRCGSIMEAQNV 543

Query: 64   FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
            F+    R+  SWN+MI G  + G  E + +LF  M ++    +  ++  ++ G    +  
Sbjct: 544  FEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPE-- 601

Query: 120  ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            ALE G+QIH  I+ +GL  D  LG++L+N+Y +                           
Sbjct: 602  ALELGRQIHMLIIESGLQLDVNLGNALINMYIR--------------------------- 634

Query: 180  GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                CG + DA  VF      + + W +MI G+    ED +A  LF +M+ +G     ST
Sbjct: 635  ----CGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKST 690

Query: 240  LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             +S+L AC S   L+ GK+V  H    G                             EL 
Sbjct: 691  FSSILKACMSSACLDEGKKVIAHILNSGY----------------------------EL- 721

Query: 300  VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
              DT + N +I+ YS  G + DA+ +F  MPN+ ++SWN MI G +QNG    AL     
Sbjct: 722  --DTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQ 779

Query: 360  MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
            M +  + ++KFS  S+++AC++ S+LE G++V A +    +  D  +  +L+  Y KCG 
Sbjct: 780  MQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGS 839

Query: 419  -------YD-------------------------ALALFNEMRNTGVKPTIITFTAILSA 446
                   +D                         AL  FN M   G+KP   TFT+ILSA
Sbjct: 840  LEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSA 899

Query: 447  CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
            C+H GLV EG + F +++ Q+ + P IEHY C+V L  RAG   EA  LI QMPF  D  
Sbjct: 900  CNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAA 959

Query: 507  MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            +W ++L  C  HG+  L    A   ++L+  N   Y+ LS+++A +G W+  + IR +M 
Sbjct: 960  VWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVME 1019

Query: 567  EKHVGKLPGCSWAD 580
             + + K PG SW +
Sbjct: 1020 GRGIRKEPGRSWIE 1033



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 136/544 (25%), Positives = 241/544 (44%), Gaps = 100/544 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q+C    S+   K++H   ++ G+    + ++N L+ MY++C + +DA  +F +MPRR
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGV-GPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRR 146

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           +  SWN++I  + + G K+K+ QLF  M         +       A    A LEYGK+IH
Sbjct: 147 DVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIH 206

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           S I+  G   D  + +SL+N+YGKC D  SA QV + +   D                  
Sbjct: 207 SKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRD------------------ 248

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                         V +N+M+  Y       E + LF +M   G+  D  T  ++L A +
Sbjct: 249 -------------VVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFT 295

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           +   L+ GK++H  A   G+  D+ V +AL                              
Sbjct: 296 TPSMLDEGKRIHKLAVNEGLNSDIRVGTAL------------------------------ 325

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
             T++  CG +  AK       ++ ++ +N++I  L+Q+G   EA + +  M    + M+
Sbjct: 326 -ATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMN 384

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
           + +  SV++AC+   +L  GE + + ++ +G  SD  I  SL+  Y +CG          
Sbjct: 385 RTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFN 444

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +A+ L+ +M++ GVKP  +TF  +LSAC +     +
Sbjct: 445 TMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSD 504

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G+   + +  +  I       + +++++ R G + EA N+ E      D+  W+S++ G 
Sbjct: 505 GKMIHEDI-LRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR-DIISWNSMIAGH 562

Query: 516 VAHG 519
             HG
Sbjct: 563 AQHG 566



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 138/568 (24%), Positives = 242/568 (42%), Gaps = 107/568 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ Y+  LL +  T   +  GK++H   + +G LNS + +   L  M++RCG+   A   
Sbjct: 284 KVTYI-NLLDAFTTPSMLDEGKRIHKLAVNEG-LNSDIRVGTALATMFVRCGDVAGAKQA 341

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
            +    R+   +NA+I    + GH E++ + +  M       N  ++  +++  + +   
Sbjct: 342 LEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSK-- 399

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL  G+ IHSHI   G   D  +G+SL+++Y                             
Sbjct: 400 ALGAGELIHSHISEVGHSSDVQIGNSLISMY----------------------------- 430

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
             A CG +  AR +F+       + WN++I+GY    +  EA+ L+ +M+  GV     T
Sbjct: 431 --ARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVT 488

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
              +LSAC++      GK +H    + G+  +  +A+AL++ Y + G   +A  +F   +
Sbjct: 489 FLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR 548

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             D I  N+MI                                G +Q+GS   A  LF  
Sbjct: 549 ARDIISWNSMI-------------------------------AGHAQHGSYEAAYKLFLE 577

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M K  L  DK + ASV+  C N  +LELG Q+   +   GL  D  +  +L++ Y +CG 
Sbjct: 578 MKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGS 637

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             A  LF +M+N G KP   TF++IL A
Sbjct: 638 LQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKA 697

Query: 447 CDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           C     + EG+K     +   Y +D  + +   ++  ++++G + +A  + ++MP   D+
Sbjct: 698 CMSSACLDEGKKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTDARKVFDKMP-NRDI 754

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIE 533
             W+ ++ G   +G  G   + A +M E
Sbjct: 755 MSWNKMIAGYAQNGLGGTALQFAYQMQE 782



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 192/411 (46%), Gaps = 24/411 (5%)

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           PD F  + LI+ Y  C  ++DA +VF +      + WNS+IS Y       +A  LF +M
Sbjct: 115 PDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM 174

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK-RGM 287
           +  G +    T  S+L+AC S   LE+GK++H    + G   D  V ++LL+ Y K   +
Sbjct: 175 QTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDL 234

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
           PS A ++FS +   D +  NTM+ +Y+    +E+   +F  M ++ +       + L   
Sbjct: 235 PS-ARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDA 293

Query: 348 GSPIEALDLFCNMNKL--------DLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
            +    LD    ++KL        D+R+   +LA++   C +++  +   + FA      
Sbjct: 294 FTTPSMLDEGKRIHKLAVNEGLNSDIRVGT-ALATMFVRCGDVAGAKQALEAFA------ 346

Query: 400 LDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
            D D ++  +L+    + G+  +A   + +MR+ GV     T+ ++L+AC     +  G+
Sbjct: 347 -DRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGE 405

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
                +    H   +++  + ++ ++AR G L  A  L   MP + D+  W++I+ G   
Sbjct: 406 LIHSHISEVGH-SSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAGYAR 463

Query: 518 HGDKGLGRKVAERM-IELDPENACAYIQLSSIFATSGEWEKSSLI-RDIMR 566
             D+G   K+ ++M  E        ++ L S    S  +    +I  DI+R
Sbjct: 464 REDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILR 514


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 186/603 (30%), Positives = 301/603 (49%), Gaps = 100/603 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C  +  +  GK++H   +  G  ++   +   ++ MY +C    +A  +FD MP R
Sbjct: 181 LLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTG-VVNMYAKCRLVEEAYKMFDRMPER 239

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIH 128
           +   WN +I G+ + G  + +L+L   M ++     ++ I     A AD+ +L  G+ IH
Sbjct: 240 DLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIH 299

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            + +  G +       S VN+                         +AL+  Y+ CG + 
Sbjct: 300 GYSMRAGFE-------SFVNVS------------------------TALVDMYSKCGSVG 328

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR +FDR T  + V WNSMI GY+ N +   A+ +F KM    V     T+   L AC+
Sbjct: 329 TARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACA 388

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLN 307
            LG +E G+ VH                                KL  +L++  D  ++N
Sbjct: 389 DLGDVEQGRFVH--------------------------------KLLDQLELGSDVSVMN 416

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           ++I++YS C R++ A  IF  + +K+L+SWN+MI+G +QNG   EA+D FC M   +++ 
Sbjct: 417 SLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKP 476

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------Y 419
           D F++ SVI A A +S L   + +   V    LD +  ++T+LVD Y KCG        +
Sbjct: 477 DSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLF 536

Query: 420 D-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
           D                         AL LF +M+   +KP  +TF  +LSAC H GLV+
Sbjct: 537 DMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVE 596

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG ++F +MK  Y ++P ++HY  MVDL  RA  LNEA + I++MP E  + ++ ++L  
Sbjct: 597 EGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGA 656

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H +  LG K A R+ +LDP++   ++ L++I+AT+  W+K + +R  M +K + K P
Sbjct: 657 CRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTP 716

Query: 575 GCS 577
           G S
Sbjct: 717 GWS 719



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 137/568 (24%), Positives = 245/568 (43%), Gaps = 114/568 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C +   +H   Q     +K G+ +  L    +L+ ++ + G+  +A  +F  + 
Sbjct: 81  AILLELCTSMKELH---QFIPLIIKNGLYSEHL-FQTKLVSLFCKFGSLHEAARVFQPIE 136

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALE 122
            +    ++ M++G+ +    + ++  F       V P   +F++ + + G    D A L 
Sbjct: 137 DKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCG----DNADLR 192

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            GK+IH  ++VNG   +    + +VN+Y KC     A ++ + M E D  C + +ISGYA
Sbjct: 193 KGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYA 252

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             G        F +T                       AL L  +M+  G   D+ T+ S
Sbjct: 253 QNG--------FGKT-----------------------ALELVLRMQEEGKRPDSITIVS 281

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L A + +G L  G+ +HG++ + G    V V++AL+D YSK                  
Sbjct: 282 ILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSK------------------ 323

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG +  A+ IF  M  K+++SWNSMI G  QNG P  A+++F  M  
Sbjct: 324 -------------CGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMD 370

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
             + M   ++   + ACA++  +E G  V   +  + L SD  +  SL+  Y KC     
Sbjct: 371 EQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDI 430

Query: 418 ---------------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                GY       +A+  F +M+   +KP   T  +++ A   
Sbjct: 431 AAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAE 490

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
             ++ +  KW   +  +  +D  +   + +VD++A+ G ++ A  L + M  E  V  W+
Sbjct: 491 LSVLPQA-KWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMD-ERHVTTWN 548

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPE 537
           +++ G   +G  GLG+   E   ++  E
Sbjct: 549 AMIDG---YGTHGLGKAALELFEKMKKE 573


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 205/678 (30%), Positives = 327/678 (48%), Gaps = 143/678 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    SI  G+++       G++   + +  +L+ MY++CG+  +  ++FD++   
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGI-LGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
             F WN MI  +   G+  +S+ LF  M +     N ++++ ++  FA   +A +E G+Q
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAA--VARVEEGRQ 272

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  I   G                    FNS N V+N           +LIS Y    K
Sbjct: 273 VHGLICKLG--------------------FNSYNTVVN-----------SLISFYFVGRK 301

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  A+++FD  TD   + WNSMISGY+ N  D   + +F KM   GV  D +T+ +V  A
Sbjct: 302 VRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVA 361

Query: 247 CSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSK--------------------- 284
           C+++G L  GK +H ++ K   +D +V   + LLD YSK                     
Sbjct: 362 CANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVS 421

Query: 285 ----------RGMPSDACKLFSELK-----------------------------VYDTIL 305
                      G+   A KLF E+K                             V+D I 
Sbjct: 422 WTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIR 481

Query: 306 LNTMIT----------VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            N + T          +Y+ CG ++DA  +F  M  K +ISWN+MI G ++N  P EAL 
Sbjct: 482 ENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALT 541

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  M + + + D  ++A ++ ACA++++L+ G ++       G   D+ ++ ++VD Y 
Sbjct: 542 LFAEMQR-ESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYV 600

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +A+  FN+MR TG++P  ++F +
Sbjct: 601 KCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFIS 660

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           IL AC H GL+ EG K F+ MK +  I+P +EHY+CMVDL AR G L +A   I+ MP +
Sbjct: 661 ILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIK 720

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
            D  +W ++L GC  H D  L  KVAER+ EL+PEN   Y+ L++I+A + +WE+   +R
Sbjct: 721 PDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLR 780

Query: 563 DIMREKHVGKLPGCSWAD 580
             + ++ + K PGCSW +
Sbjct: 781 KKIGQRGLKKNPGCSWIE 798



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 231/503 (45%), Gaps = 71/503 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  +  +  +C    ++ +GK LH + +K   L+  +   N LL MY +CG+   A
Sbjct: 348 VDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSA 407

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADL 118
           + +F+ M  +   SW +MI G+++ G  + +++LF+ M  +        ++    A A  
Sbjct: 408 IRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAIN 467

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L+ GK +H +I  N L+ +S + ++L ++Y KCG    A+ V + MK+ D        
Sbjct: 468 GNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKD-------- 519

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                                   + WN+MI GY  N+   EAL LF +M+R     D +
Sbjct: 520 -----------------------VISWNTMIGGYTKNSLPNEALTLFAEMQRESK-PDGT 555

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T+A +L AC+SL  L+ G+++HG+A + G  +D  V +A++D Y K              
Sbjct: 556 TVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVK-------------- 601

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            CG +  A+ +F  +PNK L+SW  MI G   +G   EA++ F 
Sbjct: 602 -----------------CGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFN 644

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKC 417
            M    +  D+ S  S++ AC++   L+ G ++F  +     ++ +      +VD   + 
Sbjct: 645 QMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLART 704

Query: 418 GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHY 476
           G + +     ++   +KP    + A+L  C     VK  +K  + +   + ++PE   +Y
Sbjct: 705 G-NLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERI---FELEPENTGYY 760

Query: 477 SCMVDLFARAGCLNEAVNLIEQM 499
             + +++A A    E   L +++
Sbjct: 761 VLLANIYAEAEKWEEVQKLRKKI 783



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 145/369 (39%), Gaps = 66/369 (17%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D     S+L  C+    +  G++V       GV+ D I+   L+  Y K G   +   +F
Sbjct: 149 DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF 208

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            +L      L N MI+ YS                                +G+  E+++
Sbjct: 209 DKLSESKIFLWNLMISEYSG-------------------------------SGNYGESIN 237

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF-- 413
           LF  M +L ++ + ++ +S++   A ++ +E G QV   +  +G +S   +  SL+ F  
Sbjct: 238 LFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYF 297

Query: 414 -----------------------------YCKCGYD--ALALFNEMRNTGVKPTIITFTA 442
                                        Y K G D   + +F +M   GV   + T   
Sbjct: 298 VGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVN 357

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +  AC + G +  G+           +D E+   + ++D++++ G LN A+ + E+M  E
Sbjct: 358 VFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-E 416

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELD-PENACAYIQLSSIFATSGEWEKSSLI 561
             V  W+S++ G V  G      K+ + M       +  A   + +  A +G  +   ++
Sbjct: 417 KTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIV 476

Query: 562 RDIMREKHV 570
            D +RE ++
Sbjct: 477 HDYIRENNL 485


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 198/603 (32%), Positives = 312/603 (51%), Gaps = 79/603 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFDEMP 68
           LL +C +  ++   KQ+H   +K G+ N+   ++ +L++       GN + ALLLF+ + 
Sbjct: 38  LLSTCKSFQNL---KQIHSQIIKTGLHNTQFALS-KLIEFCAISPFGNLSYALLLFESIE 93

Query: 69  RRNCFSWNAMIEG----FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
           + N F WN MI G       +G  +  +++     + N +++  L+   AK  + A + G
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK--VGATQEG 151

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQIH H+L  GL+ D  + +SL+N+Y + G+   A  V +     D    +ALI+GY   
Sbjct: 152 KQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLR 211

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G ++DARR+F+      +V WN+MI+GY  +    EAL  F +M+R  V  + ST+ +VL
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SAC+  G LE G  V         I+D  + S L                          
Sbjct: 272 SACAQSGSLELGNWVRSW------IEDHGLGSNLR------------------------- 300

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
           L+N +I +YS CG ++ A+ +F  +  K +ISWN MI G S   S  EAL LF  M + +
Sbjct: 301 LVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN 360

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQIISTSLVDFYCKCGYD-- 420
           +  +  +  S++ ACA + +L+LG+ + A +    +GL ++  + TSL+D Y KCG    
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGL-TNTSLWTSLIDMYAKCGNIEA 419

Query: 421 -------------------------------ALALFNEMRNTGVKPTIITFTAILSACDH 449
                                          AL LF +MR+ G +P  ITF  +LSAC H
Sbjct: 420 AKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV+ G++ F +M   Y I P+++HY CM+DL  RAG  +EA  L++ M  + D  +W 
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWG 539

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           S+L  C  HG+  LG   A+ + EL+PEN  AY+ LS+I+AT+G W+  + IR  + +K 
Sbjct: 540 SLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKG 599

Query: 570 VGK 572
           + K
Sbjct: 600 MKK 602



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 212/430 (49%), Gaps = 52/430 (12%)

Query: 147 VNLYGKCGDFNSANQVLNMMKEP----DDFCLSALIS--GYANCGKMNDARRVFDRTTDT 200
           + L   C  F +  Q+ + + +       F LS LI     +  G ++ A  +F+     
Sbjct: 36  LTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQP 95

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           +  +WN+MI G   ++    A+  + +M   GV  ++ T   +L +C+ +G  + GKQ+H
Sbjct: 96  NQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIH 155

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           GH  K+G+  D  V ++L++ Y++ G    A  +FS+  + D +    +IT Y+  G ++
Sbjct: 156 GHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLD 215

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
           DA+ +F  +P +  +SWN+MI G +Q+G   EAL  F  M + ++  ++ ++ +V+SACA
Sbjct: 216 DARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACA 275

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
              SLELG  V + +   GL S+  +  +L+D Y KCG                      
Sbjct: 276 QSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNV 335

Query: 419 -----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +ALALF +M+ + V+P  +TF +IL AC + G +  G KW  A     
Sbjct: 336 MIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG-KWIHA----- 389

Query: 468 HIDPEI------EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
           +ID +         ++ ++D++A+ G +  A  +   M  ++ +G W++++ G   HG  
Sbjct: 390 YIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKS-LGSWNAMISGLAMHGHA 448

Query: 522 GLGRKVAERM 531
            +  ++  +M
Sbjct: 449 NMALELFRQM 458


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 191/629 (30%), Positives = 317/629 (50%), Gaps = 59/629 (9%)

Query: 9   ARLLQSCNTHHSIHVG---KQLHLHFLKKGILNSTL-------PIA-NRLLQMYMRCGNP 57
           ARLL +   H   H     + LHL+ L   +    +       P+A   L+  Y   G  
Sbjct: 46  ARLLTAALLHDPSHPHLTLRLLHLYTLSPDLATPAVLFRADPGPVAATSLVSAYAVAGRL 105

Query: 58  TDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP------QKNDFSWNML 109
            D+   FD +P  RR+    NAMI  F +      ++ +F  +       + +D+S+  L
Sbjct: 106 RDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSL 165

Query: 110 ISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC---GDFNSANQVLNMM 166
           +S   +    A+ +  Q+H  +   G      + ++L+ LY KC   G    A +VL+ M
Sbjct: 166 LSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEM 225

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
            E D+   + ++ G+   G ++ AR  F+       V+WN+MISGY+ +    EA  LF 
Sbjct: 226 PEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFR 285

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG---VIDDVI-VASALLDTY 282
           +M    +  D  T  S+LSAC++ GF  HGK VHG   ++    V +  + V +AL+  Y
Sbjct: 286 RMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLY 345

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
           SK G  + A K+F  + + D +  NT+++ Y   G +++A  IF+ MP KS +SW  M+ 
Sbjct: 346 SKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVS 405

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G    G   +AL LF  M   D++   ++ A  ++AC  + +L+ G+Q+ A +   G ++
Sbjct: 406 GYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEA 465

Query: 403 DQIISTSLVDFYCKC---------------------------------GYDALALFNEMR 429
                 +L+  Y +C                                 G +AL LF++M 
Sbjct: 466 SNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMV 525

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
             G+ P  I+F  IL+AC+H GLV +G ++F++M+  + I P  +HY+ ++DL  RAG +
Sbjct: 526 AQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRI 585

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549
            EA +LI+ MPFE    +W +IL GC  +GD  LG   A+++ ++ PE+   YI LS+ +
Sbjct: 586 GEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTY 645

Query: 550 ATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           + +G W  ++ +R +MR++ V K PGCSW
Sbjct: 646 SAAGRWVDAARVRKLMRDRGVKKEPGCSW 674


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 196/668 (29%), Positives = 322/668 (48%), Gaps = 99/668 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYM------------------ 52
           LL++      I  G  LH H  K GI +S   I+ +LL MY+                  
Sbjct: 27  LLKNLTNQGLIRDGSALHAHLFKTGI-SSEQYISIKLLIMYLNYRKSAEADQISKDFDGF 85

Query: 53  -------------RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99
                        + GN  +A  LFDEMP+ N  SW A+I GFMK G   +S+  F   P
Sbjct: 86  DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNP 145

Query: 100 QKNDFSWNMLISGFAK---------------------------------ADLAALEYGKQ 126
            +N  SW   ISG+ +                                 A+L     G  
Sbjct: 146 FQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMS 205

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +   I+  G + D  + +SL+ L  + G+ + A +V + M+E D    +A++  Y    +
Sbjct: 206 VLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDE 265

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +ARR+FD     + V W++MI+ Y  +    E+L LF +M + G   + S  +S+LSA
Sbjct: 266 LGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSA 325

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            +S+  L+ G  +HGH  K+G   DV V+S+L+D Y K G   D   LF  +   + +  
Sbjct: 326 LASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSW 385

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N M+  YS  G +E+AK++F  MP ++ +SW+++I G        E  ++F  M  L   
Sbjct: 386 NAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEI 445

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            +K + +S++ ACA+ +SL+ G+ +  ++  +G+  D  + T+L D Y K G        
Sbjct: 446 PNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKV 505

Query: 419 -------------------------YDALALFNEMRNTG-VKPTIITFTAILSACDHCGL 452
                                     ++L LF EM  T  + P  + F A+L AC H GL
Sbjct: 506 FNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGL 565

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V +G  +F++M+  Y + P+  H++C+VD+ +RAG L EA   I  MPF+ +   W+++L
Sbjct: 566 VDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALL 625

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            GC  + ++ L  +VA ++ E+  +N   Y+ LS+I+A++G W     +R +M+ K + K
Sbjct: 626 SGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKK 685

Query: 573 LPGCSWAD 580
             GCSW +
Sbjct: 686 SGGCSWVE 693



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 34/238 (14%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +  +  ++  G  +H H  K G       +++ L+ MY +CG   D   LF
Sbjct: 316 ISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVF-VSSSLIDMYCKCGETKDGRFLF 374

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF----------- 113
           D +  +N  SWNAM+ G+   GH E++  LFN+MP +N+ SW+ +I+G            
Sbjct: 375 DTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFE 434

Query: 114 ----------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
                                 A A  A+L+ GK +H  I+  G+  D+ +G++L ++Y 
Sbjct: 435 VFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYA 494

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
           K GD  S+ +V N M + ++   +A+I G A  G   ++  +F+    TSS+  N ++
Sbjct: 495 KSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVM 552



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 176/425 (41%), Gaps = 80/425 (18%)

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           A T  S+L   ++ G +  G  +H H  K G+  +  ++  LL  Y      ++A ++  
Sbjct: 21  AQTCVSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISK 80

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL------------ 344
           +   +D ++ N MI+     G +++A+ +F  MP  + ISW ++I G             
Sbjct: 81  DFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWY 140

Query: 345 -------------------SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
                               QNG  +EA+ LF  + + +++ +K +  SV+ ACAN+   
Sbjct: 141 FERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDF 200

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAI 443
            LG  V   +   G + D  +S SL+    + G   LA  +F+ M    V    +++TAI
Sbjct: 201 GLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDV----VSWTAI 256

Query: 444 LSACDHCGLVKEGQKWFDAMK------W------------------------QYHIDPEI 473
           L        + E ++ FD M       W                        Q    P I
Sbjct: 257 LDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNI 316

Query: 474 EHYSCMVDLFARAGCLNEAVNL---IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAER 530
             +S ++   A    L   +N+   + ++ FE DV + SS++      G+   GR + + 
Sbjct: 317 SCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDT 376

Query: 531 MIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIA--FNCWF 588
           ++E   +N  ++  +   ++ +G  E++  + +IM  ++       SW+  IA   +C  
Sbjct: 377 ILE---KNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRN-----NVSWSAIIAGHLDCEQ 428

Query: 589 LDTMF 593
            D MF
Sbjct: 429 FDEMF 433


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 192/628 (30%), Positives = 318/628 (50%), Gaps = 78/628 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + ++C    S+  G   H      G +++   + N L+ MY RCG+ +DA  +FDEMP  
Sbjct: 133 VFKACGEISSVRCGDSSHALSRVTGFMSNVF-VGNALVAMYSRCGSLSDARKVFDEMPVW 191

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISGFAK-ADLAALEYGKQI 127
           +  SWN++IE + KLG  + +L++F+ M  +  F  +   L++     A +     GKQ 
Sbjct: 192 DVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQF 251

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H   + + +  +  +G+ LV++Y K G  + AN V + M   D    +A+++GY+  G+ 
Sbjct: 252 HGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRF 311

Query: 188 NDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            DA R+F++  +       V W++ ISGY       EAL +  +M  +G+  +  TL SV
Sbjct: 312 EDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISV 371

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LS C+S+G L HGK++H +A K                      P D   L       + 
Sbjct: 372 LSGCASVGALMHGKEIHCYAIKY---------------------PMD---LRKNGHGDEN 407

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCNMN 361
           +++N +I +Y+ C +++ A+ +F ++  K   +++W  MI G SQ+G   +AL+L   M 
Sbjct: 408 MVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMF 467

Query: 362 KLD--LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ-----IISTSLVDFY 414
           + D   R + F+++  + ACA++++L +G+Q+ A      L + Q      +S  L+D Y
Sbjct: 468 EEDCQTRPNAFTISCALVACASLAALSIGKQIHA----YALRNQQNAVPLFVSNCLIDMY 523

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            KCG                                  +AL +F EMR  G K   +T  
Sbjct: 524 AKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLL 583

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            +L AC H G++ +G ++F+ MK  + + P  EHY+C+VDL  RAG LN A+ LIE+MP 
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           E    +W ++L  C  HG   LG   A+++ EL   N  +Y  LS+++A +G W+  + I
Sbjct: 644 EPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRI 703

Query: 562 RDIMREKHVGKLPGCSWADGIAFNCWFL 589
           R +MR K + K PGCSW +GI     F 
Sbjct: 704 RSLMRHKGIKKRPGCSWVEGIKGTTTFF 731



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 158/364 (43%), Gaps = 50/364 (13%)

Query: 175 SALISGYANCGKMNDARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
           S LIS Y + G ++ A  +  R   +D     WNS+I  Y +N    + L  F  M    
Sbjct: 63  SHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLS 122

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
              D  T   V  AC  +  +  G   H  +   G + +V V +AL+  YS+ G  SDA 
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDAR 182

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
           K+F E+ V+D +  N++I  Y+  G+                               P  
Sbjct: 183 KVFDEMPVWDVVSWNSIIESYAKLGK-------------------------------PKM 211

Query: 353 ALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           AL++F  M N+   R D  +L +V+  CA++ +  LG+Q         +  +  +   LV
Sbjct: 212 ALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLV 271

Query: 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
           D Y K G   +A  +F+ M    VK  ++++ A+++     G  ++  + F+ M+ +  I
Sbjct: 272 DMYAKFGMMDEANTVFSNMP---VK-DVVSWNAMVAGYSQIGRFEDAVRLFEQMQ-EEKI 326

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQM------PFEADVGMWSSILRGCVAHGDKGL 523
             ++  +S  +  +A+ G   EA+ +  QM      P E  +    S+L GC + G    
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL---ISVLSGCASVGALMH 383

Query: 524 GRKV 527
           G+++
Sbjct: 384 GKEI 387



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 48/269 (17%)

Query: 292 CKLFSELKVYDTILLN----------TMITVYSSCGRIEDAKHIFRTMP--NKSLISWNS 339
           CK  S++K+    LL+           +I+ Y S G +  A  + R  P  +  +  WNS
Sbjct: 38  CKTISQVKLIHQKLLSFGILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNS 97

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           +I     NG   + L  FC M+ L    D ++   V  AC  ISS+  G+   A   + G
Sbjct: 98  LIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTG 157

Query: 400 LDSDQIISTSLVDFYCKCG--------YD-------------------------ALALFN 426
             S+  +  +LV  Y +CG        +D                         AL +F+
Sbjct: 158 FMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFS 217

Query: 427 EMRNT-GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
           +M N  G +P  IT   +L  C   G    G++ F        +   +   +C+VD++A+
Sbjct: 218 KMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQ-FHGFAVTSEMIQNMFVGNCLVDMYAK 276

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            G ++EA  +   MP + DV  W++++ G
Sbjct: 277 FGMMDEANTVFSNMPVK-DVVSWNAMVAG 304


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  314 bits (805), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 192/607 (31%), Positives = 294/607 (48%), Gaps = 100/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C++   I +G+QLH H LK     + +   N L+ MY +     DAL +F  M  R
Sbjct: 170 IIKACSSLGDIGLGRQLHAHVLKSE-FGAHIIAQNALISMYTKSNLIIDALDVFSRMATR 228

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF---AKADLAALEYGKQI 127
           +  SW +MI GF +LG++ ++L  F  M  +  +  N  I G    A + L   EYG+Q+
Sbjct: 229 DLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQL 288

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H   +  GL  D   G SL ++Y K                               CG +
Sbjct: 289 HGMSIKFGLGRDVFAGCSLCDMYAK-------------------------------CGLL 317

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           + AR VF +      V WN++I+G+    +  EA+  F +MR  G++ D  T+ S+L AC
Sbjct: 318 SCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCAC 377

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           +S   L  G QVHG+  K+G+  DV V                                N
Sbjct: 378 TSPSELYQGMQVHGYINKMGLDLDVPVC-------------------------------N 406

Query: 308 TMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           T++T+Y+ C  + DA   F  M  N  L+SWN+++    ++    E   L   M     R
Sbjct: 407 TLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHR 466

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            D  +L +V+ A A   S+E+G QV       GL+ D  ++  L+D Y KCG        
Sbjct: 467 PDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKI 526

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL LF  MR   VKP  +TF  +L+AC H GLV
Sbjct: 527 FDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLV 586

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG K +  M+ ++ I P  EH SCMVDL ARAGCLNEA   I QM F+ D+ +W ++L 
Sbjct: 587 EEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLA 646

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  HG+  +G++ AE ++++DP N+ A++ L +I+A+ G WE  + +R +M+++ V K+
Sbjct: 647 ACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKV 706

Query: 574 PGCSWAD 580
           PG SW +
Sbjct: 707 PGQSWIE 713



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 156/590 (26%), Positives = 253/590 (42%), Gaps = 124/590 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A L+ +C+   S+  GK++H H LK    +  L + N +L MY +C +  DA  +FD MP
Sbjct: 67  AYLISACSYLRSLEHGKKIHDHMLKSKS-HPDLTLQNHILNMYGKCKSLKDAQKVFDAMP 125

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALE 122
            RN  SW ++I G+ + G    +L+ +       VMP  + F++  +I   A + L  + 
Sbjct: 126 ERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMP--DQFTFGSIIK--ACSSLGDIG 181

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+Q+H+H+L       S  G+ ++                           +ALIS Y 
Sbjct: 182 LGRQLHAHVL------KSEFGAHII-------------------------AQNALISMYT 210

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLA 241
               + DA  VF R      + W SMI+G+     + EAL  F +M   GV L +     
Sbjct: 211 KSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFG 270

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           SV SACSSL   E+G+Q+HG + K G+  DV    +L D Y+K                 
Sbjct: 271 SVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAK----------------- 313

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                         CG +  A+ +F  +    L++WN++I G +  G   EA+  F  M 
Sbjct: 314 --------------CGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMR 359

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--Y 419
              L  D+ ++ S++ AC + S L  G QV   +  +GLD D  +  +L+  Y KC    
Sbjct: 360 HQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELR 419

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH----------- 468
           DA+  F EMR       ++++ AIL+AC      +E  +    M    H           
Sbjct: 420 DAIFFFEEMR---CNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVL 476

Query: 469 ----------IDPEIEHYSC-------------MVDLFARAGCLNEAVNLIEQMPFEADV 505
                     I  ++  Y+              ++DL+A+ G L  A  + + M    DV
Sbjct: 477 GASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSM-INPDV 535

Query: 506 GMWSSILRGCV--AHGDKGLGRKVAERMIELDPEN--------ACAYIQL 545
             WSS++ G     +G++ L      R +++ P +        AC+++ L
Sbjct: 536 VSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGL 585



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 136/522 (26%), Positives = 226/522 (43%), Gaps = 110/522 (21%)

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-----SWNMLISGFAKADLAALEYGKQIH 128
           S N  I    K     ++++ F  + +K  F     ++  LIS  A + L +LE+GK+IH
Sbjct: 29  SSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLIS--ACSYLRSLEHGKKIH 86

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            H+L +    D  L + ++N+YGKC                                 + 
Sbjct: 87  DHMLKSKSHPDLTLQNHILNMYGKCKS-------------------------------LK 115

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           DA++VFD   + + V W S+I+GY  N +   AL  + +M ++GV+ D  T  S++ ACS
Sbjct: 116 DAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACS 175

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           SLG +  G+Q+H H  K      +I  +AL+  Y+K  +  DA  +FS +   D      
Sbjct: 176 SLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRD------ 229

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM- 367
                                    LISW SMI G SQ G  +EAL  F  M    + + 
Sbjct: 230 -------------------------LISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLP 264

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------- 419
           ++F   SV SAC+++   E G Q+       GL  D     SL D Y KCG         
Sbjct: 265 NEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVF 324

Query: 420 -------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                    +A+A F++MR+ G+ P  IT  ++L AC     + 
Sbjct: 325 YQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELY 384

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           +G +    +  +  +D ++   + ++ ++A+   L +A+   E+M   AD+  W++IL  
Sbjct: 385 QGMQVHGYIN-KMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTA 443

Query: 515 CVAHGDKGLGRKVAERMIEL--DPENACAYIQLSSIFATSGE 554
           C+ H       +   R+++L    ++   YI L+++   S E
Sbjct: 444 CMRHDQA----EEVFRLLKLMCISQHRPDYITLTNVLGASAE 481



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 7/195 (3%)

Query: 4   RIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           R DY  L  +L +     SI +G Q+H + LK G LN    + N L+ +Y +CG+   A 
Sbjct: 466 RPDYITLTNVLGASAETVSIEIGNQVHCYALKTG-LNCDTSVTNGLIDLYAKCGSLKTAH 524

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
            +FD M   +  SW+++I G+ + G+ E++L+LF  M + +    ++   G   A   + 
Sbjct: 525 KIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVG 584

Query: 120 ALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSAL 177
            +E G +++  +    G+       S +V+L  + G  N A   ++ M  +PD      L
Sbjct: 585 LVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTL 644

Query: 178 ISGYANCGKMNDARR 192
           ++     G ++  +R
Sbjct: 645 LAACKTHGNVDVGKR 659


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 198/630 (31%), Positives = 318/630 (50%), Gaps = 64/630 (10%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D+   LL+ CN    I   KQ+H   +  G   S   ++ RL+ +Y R G  +DA  +F 
Sbjct: 39  DFFDHLLRQCN---GIQHSKQVHSATVVTGAYCSAF-VSARLVSIYSRYGLVSDARKVFG 94

Query: 66  EMPRRNCFS----WNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAD 117
             P   C+S    WN++I   +  G+  ++LQL+  M       + F++ +L+   A ++
Sbjct: 95  SAPFE-CYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLR--ASSN 151

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L A    K +H H++  G      +G+ L+ +Y K    + A +V + M+       + +
Sbjct: 152 LGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTM 211

Query: 178 ISGYANCGKMNDARRVFDRT----TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           +SGYA    +N A R+F +      + + V W S++S +       E ++LF KMR  GV
Sbjct: 212 VSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGV 271

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
              A  LA VLS C+ L  L  G+ +HG+  K G  D +   +AL+  Y K G   DA K
Sbjct: 272 GPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEK 331

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM----------PNKSLISWNSMIVG 343
           LF E+KV + +  N +I+ ++  G  + A  +   +          PN  +I+W+++I G
Sbjct: 332 LFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPN--VITWSAIICG 389

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
            +  G   E+L++F  M   +++ +  ++ASV+S CA +++L LG ++   V    +D +
Sbjct: 390 FASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLAALNLGREMHGHVIRARMDDN 449

Query: 404 QIISTSLVDFYCKCG---------------------------------YDALALFNEMRN 430
            ++   L++ Y KCG                                  DALA FN M  
Sbjct: 450 VLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIK 509

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           +G +P  +TF A LSAC H GLV EG   F  M+  + I+PEIEHY+CMVDL  RAG + 
Sbjct: 510 SGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVE 569

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           EA N+I+ MP E +  +WSS+L  C  H D  L  + A ++  L+ +   +++ LS+IFA
Sbjct: 570 EASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAKISNLNSKITGSHMLLSNIFA 629

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            S  WE S+ +R   R K + K+PG SW +
Sbjct: 630 ASCRWEDSARVRISARAKGLKKVPGWSWIE 659


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 193/627 (30%), Positives = 321/627 (51%), Gaps = 81/627 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++ +GK +H H  +   L+  + + N LL MY++CG+  DA  +F E+P +
Sbjct: 111 VLKACGLVRNVELGKMVHYHIFQAK-LDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCK 169

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KADLAALEYGKQIHS 129
           N  SWN +I G+ K G  + +++LF+ MP+ +  SWN +I+G    A   AL +   +H 
Sbjct: 170 NATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRFVSMMHG 229

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGYANCG 185
                GL  D     S++   G   +     ++    +    E   +C+SALI  Y++C 
Sbjct: 230 ----KGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCK 285

Query: 186 KMNDARRVFDRTTDTSSV-----MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
            +++A ++FD+    SSV     +WNSM+SG++ N +  EAL +   M R+GV  D  T 
Sbjct: 286 LLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTF 345

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           + VL  C +   L    QVHG     G   D +V S L+D Y+K+               
Sbjct: 346 SIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQ--------------- 390

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                           G I +A  +F  +P+K +++W+S+I G ++ GS   A  LF +M
Sbjct: 391 ----------------GSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDM 434

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
             L L++D F ++ V+ AC++++S + G+QV +     G +S+ +++T+L+D Y KCG  
Sbjct: 435 IHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDI 494

Query: 419 YDALALF-------------------------------NEMRNTGVKPTIITFTAILSAC 447
            DAL+LF                               ++M  +G KP  IT   +L+AC
Sbjct: 495 EDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTAC 554

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV+E    F++++  + + P  EHY+CMVD+  +AG   EAV LI +MPF+ D  +
Sbjct: 555 RHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKTI 614

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           WSS+L  C  + ++ L   VAE ++   PE+   YI LS+++A  G W+  S +R+ +  
Sbjct: 615 WSSLLGACGTYKNRDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSKVRETV-- 672

Query: 568 KHVGKLPGCSWADGIAFNCWFLDTMFL 594
           K +GK         I F  +F++ + L
Sbjct: 673 KKIGKKRAGKIFYEIPFKFYFMEHLHL 699



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 158/574 (27%), Positives = 261/574 (45%), Gaps = 84/574 (14%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ++++    + C    SI   K LH H +K G  N    I N ++ +Y +C +  DA  +F
Sbjct: 3   LNHIQIAFRYCIRFRSIKNAKSLHSHIIKSGFCNHIF-ILNNMISVYSKCSSIIDARNMF 61

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAKADLA 119
           DEMP RN  SW  M+          ++L L+N M      Q N F ++ ++   A   + 
Sbjct: 62  DEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLK--ACGLVR 119

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            +E GK +H HI    LD D VL ++L+++Y KCG    A +V   +   +    + LI 
Sbjct: 120 NVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLIL 179

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GYA  G ++DA ++FD+  +   V WNS+I+G + +N  + AL     M   G+  D  T
Sbjct: 180 GYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLV-DNASSRALRFVSMMHGKGLKMDEFT 238

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE-L 298
             SVL AC     L  G+++H +  K G        SAL+D YS       +CKL SE  
Sbjct: 239 FPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYS-------SCKLLSEAT 291

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
           K++D    N+ ++                    +SL  WNSM+ G   NG  +EAL +  
Sbjct: 292 KIFDQYFRNSSVS--------------------ESLALWNSMLSGHVVNGDYVEALSMIS 331

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           +M++  +R D ++ + V+  C N  +L L  QV   V   G + D ++ + L+D Y K G
Sbjct: 332 HMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQG 391

Query: 419 Y--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
              +AL LF  + +  V    + ++++++ C   G  K     F  M    H+  +I+H+
Sbjct: 392 SINNALRLFERLPDKDV----VAWSSLITGCARFGSDKLAFSLFMDM---IHLGLQIDHF 444

Query: 477 -------------------------------------SCMVDLFARAGCLNEAVNLIEQM 499
                                                + ++D++A+ G + +A++L   +
Sbjct: 445 VISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCL 504

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
             E D   W+SI+ GC  +G       +  +MIE
Sbjct: 505 S-EIDTMSWTSIIVGCAQNGRAEEAISLLHKMIE 537



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 169/406 (41%), Gaps = 59/406 (14%)

Query: 3   TRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
            R D+   + +L+ C    ++ +  Q+H   +  G       + + L+ +Y + G+  +A
Sbjct: 338 VRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSG-YELDCVVGSILIDIYAKQGSINNA 396

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DL 118
           L LF+ +P ++  +W+++I G  + G  + +  LF  M        + +IS   KA   L
Sbjct: 397 LRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSL 456

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           A+ ++GKQ+HS  L  G + + V+ ++L+++Y KCGD   A  +   + E D    +++I
Sbjct: 457 ASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSII 516

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT----EALLLFHKMRRN--- 231
            G A  G+  +A  +  +  ++ +      I G ++    +    EA  +F+ +  N   
Sbjct: 517 VGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGL 576

Query: 232 -----------------GVLEDASTL-------------ASVLSACSSLGFLEHGKQVHG 261
                            G  E+A  L             +S+L AC +    +    V  
Sbjct: 577 IPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVAE 636

Query: 262 HACKVGVIDDVIVASALLDTYSKRGM---------------PSDACKLFSELKVYDTILL 306
           H       +DV V   L + Y+  GM                  A K+F E+  +    +
Sbjct: 637 HLLATSP-EDVSVYIMLSNVYAALGMWDSVSKVRETVKKIGKKRAGKIFYEIP-FKFYFM 694

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
             +   ++  G       +   +    L+SWN++I GL+ N SP E
Sbjct: 695 EHLHLGHAKQGLNGGVVKVIYPILEPDLVSWNNVIAGLADNASPYE 740


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 190/618 (30%), Positives = 307/618 (49%), Gaps = 105/618 (16%)

Query: 3   TRI--DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           TR+  D    LLQ C    S+  G+++H   LK GI  +   + N LL MY +CG+ TDA
Sbjct: 43  TRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY-LENTLLSMYAKCGSLTDA 101

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKA 116
             +FD +  RN  SW AMIE F+      ++ + +  M     + +  ++  L++ F   
Sbjct: 102 RRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNP 161

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           +L  L+ G+++H  I+  GL+ +  +G+SLV +Y KCGD + A  + + + E +    + 
Sbjct: 162 EL--LQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTL 219

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LI+GYA  G+++                                AL L   M++  V  +
Sbjct: 220 LIAGYAQQGQVD-------------------------------VALELLETMQQAEVAPN 248

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             T AS+L  C++   LEHGK+VH +  + G   ++ V ++L+  Y K G   +A KLFS
Sbjct: 249 KITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFS 308

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           +L   D +    M+T Y+  G  ++A ++FR M                Q G        
Sbjct: 309 DLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRM---------------QQQG-------- 345

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
                   ++ DK +  SV+++C++ + L+ G+++  ++   G + D  + ++LV  Y K
Sbjct: 346 --------IKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAK 397

Query: 417 CG----------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           CG                                   +AL  F++M+  G+KP  +TFT+
Sbjct: 398 CGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTS 457

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H GLV+EG+K F +M   Y I P +EHYSC VDL  RAG L EA N+I  MPF 
Sbjct: 458 VLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFI 517

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W ++L  C  H D   G + AE +++LDP++  AY+ LSSI+A +G +E +  +R
Sbjct: 518 PGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVR 577

Query: 563 DIMREKHVGKLPGCSWAD 580
            +M ++ V K PG SW +
Sbjct: 578 QVMEKRDVVKEPGQSWIE 595



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 182/459 (39%), Gaps = 115/459 (25%)

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           EAL + + M   G    +     +L  C+ L  LE G++VH    K G+  +  + + LL
Sbjct: 30  EALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 89

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
             Y+K G  +D                               A+ +F ++ +++++SW +
Sbjct: 90  SMYAKCGSLTD-------------------------------ARRVFDSIRDRNIVSWTA 118

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           MI         +EA   +  M     + DK +  S+++A  N   L+LG++V   +   G
Sbjct: 119 MIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAG 178

Query: 400 LDSDQIISTSLVDFYCKCG--------YD-------------------------ALALFN 426
           L+ +  + TSLV  Y KCG        +D                         AL L  
Sbjct: 179 LELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLE 238

Query: 427 EMRNTGVKPTIITFTAILSAC------DH-----------------------------CG 451
            M+   V P  ITF +IL  C      +H                             CG
Sbjct: 239 TMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCG 298

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL---IEQMPFEADVGMW 508
            ++E +K F  +    H D  +  ++ MV  +A+ G  +EA+NL   ++Q   + D   +
Sbjct: 299 GLEEARKLFSDLP---HRD--VVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTF 353

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ--LSSIFATSGEWEKSSLIRDIMR 566
           +S+L  C +      G+++ ++++     N   Y+Q  L S++A  G  + +SL+ + M 
Sbjct: 354 TSVLTSCSSPAFLQEGKRIHQQLVHAG-YNLDVYLQSALVSMYAKCGSMDDASLVFNQMS 412

Query: 567 EKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQH 605
           E++V      +W   I   C         L  FD++K+ 
Sbjct: 413 ERNV-----VAWTAIITGCCAQHGRCREALEYFDQMKKQ 446



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 39/240 (16%)

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
           L + G   EAL +   M     R+       ++  CA + SLE G +V A +   G+  +
Sbjct: 22  LCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPN 81

Query: 404 QIISTSLVDFYCKCG--YDALALFNEMRN------------------------------- 430
           + +  +L+  Y KCG   DA  +F+ +R+                               
Sbjct: 82  RYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKL 141

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQK-WFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
            G KP  +TF ++L+A  +  L++ GQK   + ++    ++P +   + +V ++A+ G +
Sbjct: 142 AGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGDI 199

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549
           ++A  + +++P E +V  W+ ++ G    G   +  ++ E M +   E A   I  +SI 
Sbjct: 200 SKARVIFDRLP-EKNVVTWTLLIAGYAQQGQVDVALELLETMQQ--AEVAPNKITFASIL 256


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 201/625 (32%), Positives = 295/625 (47%), Gaps = 79/625 (12%)

Query: 26  QLHLHFLKKGILNSTLP--------IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA 77
           Q+H  F+  G+L              + RLL +         +L L   + R N FS N 
Sbjct: 22  QIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFH-----HSLRLLHVVHRPNAFSCNM 76

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           +++   + G     L L+  M    D  +   I   A A   A+E G+Q+H H + +G  
Sbjct: 77  VLKAAREHGLPHLCLPLYASMSAAPD-CYTHTILAAACATRRAIEEGRQVHCHAVRHGFG 135

Query: 138 FDSVLGSSLVNLYGKCG-------------------------------DFNSANQVLNMM 166
            +  L ++L+++Y  CG                               D + A  V   M
Sbjct: 136 RNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARM 195

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
            E     +S+++S +   G +++AR+VFD         W +MIS +  N +  EAL LF 
Sbjct: 196 PERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFS 255

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            MR  G   D + +  V++AC+ L    +G+  HG A + G+   + V +AL+  YS   
Sbjct: 256 DMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFL 315

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
               A +LF   +  D    N+MI  Y   G ++DAK +F  MP+K  +SW +MI G  Q
Sbjct: 316 NVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQ 375

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           N    EAL +F NM    ++ D+ +L SVISAC N+SSLE G+ +   +         I+
Sbjct: 376 NDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVIL 435

Query: 407 STSLVDFYCKCG--YDALALFNEMRNTGVK------------------------------ 434
            TSL+D Y KCG    AL +F+ M   G                                
Sbjct: 436 GTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSST 495

Query: 435 --PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
             P  ITFT +LSAC H GLV+EGQ +F  M+ +YHI P I HY CMVDL  RAG + EA
Sbjct: 496 ATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEA 555

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
            NLIE MP   DV  W ++L  C  HGD  +G +V  +++ LDP +   +  LS+I+A+ 
Sbjct: 556 ENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASE 615

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCS 577
           G W+    +R  M++ HV K+PG S
Sbjct: 616 GMWQHVKDLRGSMKQWHVPKIPGSS 640


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 201/625 (32%), Positives = 295/625 (47%), Gaps = 79/625 (12%)

Query: 26  QLHLHFLKKGILNSTLP--------IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA 77
           Q+H  F+  G+L              + RLL +         +L L   + R N FS N 
Sbjct: 22  QIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFH-----HSLRLLHVVHRPNAFSCNM 76

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           +++   + G     L L+  M    D  +   I   A A   A+E G+Q+H H + +G  
Sbjct: 77  VLKAAREHGLPHLCLPLYASMSAAPD-CYTHTILAAACATRRAIEEGRQVHCHAVRHGFG 135

Query: 138 FDSVLGSSLVNLYGKCG-------------------------------DFNSANQVLNMM 166
            +  L ++L+++Y  CG                               D + A  V   M
Sbjct: 136 RNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARM 195

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
            E     +S+++S +   G +++AR+VFD         W +MIS +  N +  EAL LF 
Sbjct: 196 PERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFS 255

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            MR  G   D + +  V++AC+ L    +G+  HG A + G+   + V +AL+  YS   
Sbjct: 256 DMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFL 315

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
               A +LF   +  D    N+MI  Y   G ++DAK +F  MP+K  +SW +MI G  Q
Sbjct: 316 NVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQ 375

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           N    EAL +F NM    ++ D+ +L SVISAC N+SSLE G+ +   +         I+
Sbjct: 376 NDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVIL 435

Query: 407 STSLVDFYCKCG--YDALALFNEMRNTGVK------------------------------ 434
            TSL+D Y KCG    AL +F+ M   G                                
Sbjct: 436 GTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSST 495

Query: 435 --PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
             P  ITFT +LSAC H GLV+EGQ +F  M+ +YHI P I HY CMVDL  RAG + EA
Sbjct: 496 ATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEA 555

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
            NLIE MP   DV  W ++L  C  HGD  +G +V  +++ LDP +   +  LS+I+A+ 
Sbjct: 556 ENLIESMPMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASE 615

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCS 577
           G W+    +R  M++ HV K+PG S
Sbjct: 616 GMWQHVKDLRGSMKQWHVPKIPGSS 640


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 182/607 (29%), Positives = 307/607 (50%), Gaps = 78/607 (12%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           +S +   N  +  YMR G   +AL +F  MPR +  S+N MI G+++ G  E + +LF+ 
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 98  MPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
           MP+++  SWN++I G+ +        GK      ++   D  S   +++++ Y + G  +
Sbjct: 121 MPERDLVSWNVMIKGYVRNR----NLGKARELFEIMPERDVCSW--NTMLSGYAQNGCVD 174

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
            A  V + M E +D   +AL+S Y    KM +A  +F    + + V WN ++ G++   +
Sbjct: 175 DARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKK 234

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
             EA   F  M     + D  +  ++++  +  G ++  +Q+   +     + DV   +A
Sbjct: 235 IVEARQFFDSMN----VRDVVSWNTIITGYAQSGKIDEARQLFDES----PVQDVFTWTA 286

Query: 278 LLDTYSKRGMPSDACKLFSEL-------------------------KVYDTI------LL 306
           ++  Y +  M  +A +LF ++                         +++D +        
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW 346

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           NTMIT Y+ CG+I +AK++F  MP +  +SW +MI G SQ+G   EAL LF  M +   R
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
           +++ S +S +S CA++ +LELG+Q+  R+   G ++   +  +L+  YCKCG        
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466

Query: 419 ------------------YD-------ALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                             Y        AL  F  M+  G+KP   T  A+LSAC H GLV
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G+++F  M   Y + P  +HY+CMVDL  RAG L +A NL++ MPFE D  +W ++L 
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLG 586

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
               HG+  L    A+++  ++PEN+  Y+ LS+++A+SG W     +R  MR+K V K+
Sbjct: 587 ASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKV 646

Query: 574 PGCSWAD 580
           PG SW +
Sbjct: 647 PGYSWIE 653



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQLH   +K G       + N LL MY +CG+  +A  LF EM  ++
Sbjct: 416 LSTCADVVALELGKQLHGRLVKGGYETGCF-VGNALLLMYCKCGSIEEANDLFKEMAGKD 474

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ- 126
             SWN MI G+ + G  E +L+ F  M ++    +D +   ++S  +   L  ++ G+Q 
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL--VDKGRQY 532

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPD 170
            ++     G+  +S   + +V+L G+ G    A+ ++ NM  EPD
Sbjct: 533 FYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPD 577


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 195/681 (28%), Positives = 329/681 (48%), Gaps = 117/681 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +  +C     ++ G++ H   LK G  +S + ++N LL MY +CG   DA  +F+ +
Sbjct: 141 FATVFSACGGLKDVNCGRRNHGLVLKVG-FDSNIYVSNALLCMYTKCGLNEDAFRVFEGI 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA------- 116
              N  ++  M+ G  +    ++ L+LF +M +K    +  S + ++   AK        
Sbjct: 200 VEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCD 259

Query: 117 ---DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
               L+    GKQIH+  + +G + D  L +SL+++Y K GD +SA  V   + +     
Sbjct: 260 DSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVS 319

Query: 174 LSALISGYAN----------------CGKMND-------------------ARRVFDRTT 198
            + +ISGY N                CG   D                    R++FD  +
Sbjct: 320 WNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFDCMS 379

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
             S + WN+++SGY  + +  EA+ LF KM+      D +TLA +LS+C+ LG LE GKQ
Sbjct: 380 SPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQ 439

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           VH  + K+G  DDV VAS+L                               I VYS CG+
Sbjct: 440 VHAVSQKLGFYDDVYVASSL-------------------------------INVYSKCGK 468

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +E +KH+F  +    ++ WNSMI G S N    +AL  F  M +      +FS A++ S+
Sbjct: 469 MEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASS 528

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------- 418
           CA +SSL  G+Q+ A++   G   +  + +SLV+ YCKCG                    
Sbjct: 529 CAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTW 588

Query: 419 -------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         +A++L+ +M ++G KP  ITF A+L+AC H  LV EG + F +M  
Sbjct: 589 NEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQ 648

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
           ++ + P+++HY+C++D   R G  NE   +++ MP++ D  +W  +L  C  H +  L +
Sbjct: 649 KFEVVPKLDHYTCIIDCLGRVGRFNEVEVILDTMPYKDDTIVWEVVLSSCRVHANVSLAK 708

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD---GI 582
           + AE +  L+P N+  Y+ L++++++ G W+ + ++RD+M +  + K PG S ++    +
Sbjct: 709 RAAEELHRLNPRNSAPYVLLANMYSSMGRWDDAQVVRDLMSDNQIHKDPGYSRSEFKYDV 768

Query: 583 AFNCWFLDTMFLQLANFDEIK 603
                F   M+    N D+ +
Sbjct: 769 QNKTSFFANMYSCFGNLDDAQ 789



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 162/613 (26%), Positives = 280/613 (45%), Gaps = 101/613 (16%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M+ +   L  LLQSC T+ S+   K +H    +  + + T  + N L+ +Y +C   T A
Sbjct: 1   MEVKSLNLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTF-LCNHLIDLYSKCNQITSA 59

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA 120
             +FD++P +N FS+NA++  F K  + + + +LF  MP++N  S N +I+   K     
Sbjct: 60  HHVFDKIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNG--- 116

Query: 121 LEYGKQ-IHSHILVNGLDFDSVLGS--SLVNLYGKCGDFNSAN-------QVLNMMKEPD 170
             Y +Q + ++ L+  + ++SV  S  +   ++  CG     N        VL +  + +
Sbjct: 117 --YERQALDTYDLM--MVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSN 172

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
            +  +AL+  Y  CG   DA RVF+   + + V + +M+ G    N+  E L LF  M R
Sbjct: 173 IYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLR 232

Query: 231 NGVLEDASTLASVLSACS---SLGFLE---------HGKQVHGHACKVGVIDDVIVASAL 278
            G+  D+ +L+++L  C+   S G  +          GKQ+H  A K G   D+ + ++L
Sbjct: 233 KGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSL 292

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY------------------------- 313
           LD Y+K G    A  +F  L  +  +  N MI+ Y                         
Sbjct: 293 LDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDD 352

Query: 314 -------SSC---GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                  ++C   G ++  + IF  M + SLISWN+++ G +Q+    EA++LF  M   
Sbjct: 353 VTYINMLTACVKSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQ 412

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
               D+ +LA ++S+CA +  LE G+QV A    +G   D  +++SL++ Y KCG     
Sbjct: 413 WQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVS 472

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        DALA F  MR  G  P+  +F  I S+C   
Sbjct: 473 KHVFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKL 532

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
             + +GQ+    +    ++D  +   S +V+++ + G +  A    + MP + ++  W+ 
Sbjct: 533 SSLFQGQQIHAQIIKDGYVD-NVFVGSSLVEMYCKCGDVGAARYYFDMMPGK-NIVTWNE 590

Query: 511 ILRGCVAHGDKGL 523
           ++ G  AH   GL
Sbjct: 591 MIHG-YAHNGYGL 602



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 196/457 (42%), Gaps = 85/457 (18%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +L   K IH+ I    L  D+ L + L++LY KC    SA+ V + +   + F  +A++S
Sbjct: 20  SLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNIFSYNAILS 79

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH-KMRRNGVLEDAS 238
            +     +  A R+F +  + ++V  N++I+  + N  + +AL  +   M    V     
Sbjct: 80  AFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHI 139

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T A+V SAC  L  +  G++ HG   KVG   ++ V++ALL  Y+K G+  DA ++F   
Sbjct: 140 TFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFE-- 197

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             G +E         PN+  +++ +M+ GLSQ     E L+LF 
Sbjct: 198 ------------------GIVE---------PNE--VTFTTMMGGLSQTNQVKEGLELFR 228

Query: 359 NMNKLDLRMDKFSLASVISACAN------------ISSLELGEQVFARVTIIGLDSDQII 406
            M +  + +D  SL++++  CA             +S+   G+Q+       G + D  +
Sbjct: 229 LMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHL 288

Query: 407 STSLVDFYCKCG---------------------------------YDALALFNEMRNTGV 433
             SL+D Y K G                                   AL  F  M+  G 
Sbjct: 289 CNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGY 348

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           +P  +T+  +L+AC   G VK G++ FD M       P +  ++ ++  + ++    EAV
Sbjct: 349 EPDDVTYINMLTACVKSGDVKVGRQIFDCMS-----SPSLISWNAILSGYNQSADHGEAV 403

Query: 494 NLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKV 527
            L  +M F+    D    + IL  C   G    G++V
Sbjct: 404 ELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQV 440


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 180/595 (30%), Positives = 297/595 (49%), Gaps = 80/595 (13%)

Query: 51  YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           +MR G    AL LF+ MPRR+  SWNAMI G +       + QLF  MP ++  SWN++I
Sbjct: 59  HMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMI 118

Query: 111 SGFAKADLAALEYGKQIHSHILVNGL-DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
           SG        + Y     + +L + + + D V  +++++ Y + G    A ++ + M   
Sbjct: 119 SG-------CVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK 171

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           +    + +++ Y   G++ DARR+F+   D   + WN M+ GY+  N   +A  +F +M 
Sbjct: 172 NSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP 231

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
                 D  +  +++S  +  G L   +++   +     + DV   +A++  Y + GM  
Sbjct: 232 E----RDEVSWNTMISGYAQNGELLEAQRLFEES----PVRDVFTWTAMVSGYVQNGMLD 283

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           +A ++F  +   +++  N +I  Y  C R++ A+ +F  MP +++ SWN+MI G +QNG 
Sbjct: 284 EARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGD 343

Query: 350 PI-------------------------------EALDLFCNMNKLDLRMDKFSLASVISA 378
                                            EAL LF  M +   R+++ +  S +S 
Sbjct: 344 IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 403

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------- 418
           CA I++LELG+QV  RV   GL+S   +  +L+  YCKCG                    
Sbjct: 404 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSW 463

Query: 419 -------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         +AL LF  M+ TG+ P  +T   +LSAC H GLV +G ++F +M  
Sbjct: 464 NTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQ 523

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
            Y I    +HY+CM+DL  RAG L++A NL++ MPFE D   W ++L     HG+  LG 
Sbjct: 524 DYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE 583

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           K A+ + E++P+N+  Y+ LS+++A SG W     +R  MR++ V K+PG SW +
Sbjct: 584 KAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 638



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 206/455 (45%), Gaps = 40/455 (8%)

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D D V  +  +  + + G  +SA ++ N M        +A+ISG  +  K   AR++F++
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                 V WN MISG +       A LLF +M       D  +  ++LS  +  G+++  
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPE----RDVVSWNAMLSGYAQNGYVKEA 161

Query: 257 KQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           K++     CK     + I  + +L  Y + G   DA +LF     ++ I  N M+  Y  
Sbjct: 162 KEIFDEMPCK-----NSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVK 216

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
             R+ DA+ IF  MP +  +SWN+MI G +QNG  +EA  LF    +  +R D F+  ++
Sbjct: 217 RNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF---EESPVR-DVFTWTAM 272

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGV 433
           +S       L+   +VF  +     + + +   +++  Y +C     A  LF  M    V
Sbjct: 273 VSGYVQNGMLDEARRVFDGMP----EKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNV 328

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
                ++  +++     G + + + +FD M  +  I      ++ ++  +A++G   EA+
Sbjct: 329 S----SWNTMITGYAQNGDIAQARNFFDRMPQRDSIS-----WAAIIAGYAQSGYGEEAL 379

Query: 494 NLIEQMPFEAD---VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI--QLSSI 548
           +L  +M  + +      ++S L  C       LG++V  R+++   E+ C Y+   L  +
Sbjct: 380 HLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGC-YVGNALLVM 438

Query: 549 FATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIA 583
           +   G  + + ++ + + EK V      SW   IA
Sbjct: 439 YCKCGNIDDAYIVFEGIEEKEV-----VSWNTMIA 468



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 161/367 (43%), Gaps = 54/367 (14%)

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
            TD   V WN  I+ ++ N +   AL LF+ M R   +    +  +++S C S       
Sbjct: 44  ATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSI----SWNAMISGCLSNDKFYLA 99

Query: 257 KQVHGHACKVGVID---------------------------DVIVASALLDTYSKRGMPS 289
           +Q+        ++                            DV+  +A+L  Y++ G   
Sbjct: 100 RQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVK 159

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           +A ++F E+   ++I  N M+  Y   GRIEDA+ +F +  +  LISWN M+ G  +   
Sbjct: 160 EAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNR 219

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
            ++A  +F  M +     D+ S  ++IS  A    L   +++F    +     D    T+
Sbjct: 220 LVDARGIFDRMPE----RDEVSWNTMISGYAQNGELLEAQRLFEESPV----RDVFTWTA 271

Query: 410 LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
           +V  Y + G   +A  +F+ M     +   +++ AI++    C  + + ++ F+AM  Q 
Sbjct: 272 MVSGYVQNGMLDEARRVFDGM----PEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ- 326

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
                +  ++ M+  +A+ G + +A N  ++MP + D   W++I+ G   +   G G + 
Sbjct: 327 ----NVSSWNTMITGYAQNGDIAQARNFFDRMP-QRDSISWAAIIAG---YAQSGYGEEA 378

Query: 528 AERMIEL 534
               +E+
Sbjct: 379 LHLFVEM 385


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 187/592 (31%), Positives = 297/592 (50%), Gaps = 66/592 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           NR +  +MR G   DA  LF  MPRR+  ++N M+ G+   G   ++L  F  +P+ + F
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSF 170

Query: 105 SWNMLISGFAK----ADLAAL----------EYGKQIHSHI---LVN--------GLDFD 139
           S+N L+         AD+ AL           Y   I SH    LV+          + D
Sbjct: 171 SYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKD 230

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
           +V  + ++  Y + G    A ++ +   E D    +AL++GY    ++ +A+++F++   
Sbjct: 231 AVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQ 290

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
              V WN+M+SGY    +  EA  LF        + D  T  +++S  +  G LE  K+V
Sbjct: 291 RDVVSWNTMVSGYARRGDMAEARRLFDV----APIRDVFTWTAIVSGYAQNGMLEEAKRV 346

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
                      + +  +A++  Y +R M  +A +LF  +   +    NTM+T Y+  G +
Sbjct: 347 FDAMPD----KNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGML 402

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           ++A+ IF  MP K  +SW +M+   SQ G   E L LF  M +    +++ + A V+S C
Sbjct: 403 DEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTC 462

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------- 418
           A+I++LE G Q+ +R+   G      +  +L+  Y KCG                     
Sbjct: 463 ADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWN 522

Query: 419 ------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        +AL +F+ MR T  KP  IT   +L+AC H GLV++G  +F +M   
Sbjct: 523 TMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRD 582

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           + +  + EHY+CM+DL  RAG L+EAVNL++ MPFE D  MW ++L     H +  LGR 
Sbjct: 583 FGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRN 642

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            AE++ EL+PENA  Y+ LS+I+A+SG+W     +R IM E+ V K+PG SW
Sbjct: 643 AAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSW 694



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 138/298 (46%), Gaps = 25/298 (8%)

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           A+A   ++ +   P+DAC   +     + I  N  IT +   GR+ DA+ +F  MP +S 
Sbjct: 81  AAARQRSHRRPPAPADAC--ITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRST 138

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
            ++N+M+ G + NG   +AL  F ++     R D FS  +++ A    SSL     +F  
Sbjct: 139 STYNTMLAGYAANGRLPQALSFFRSIP----RPDSFSYNTLLHALGVSSSLADVRALFDE 194

Query: 395 VTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
           + +     D +    ++  +   G  +LA      +   +   +++  +L+A    G ++
Sbjct: 195 MPV----KDSVSYNVMISSHANHGLVSLA--RHYFDLAPEKDAVSWNGMLAAYVRNGRIQ 248

Query: 455 EGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           E ++ FD+  +W      +   ++ ++  + +   + EA  +  +MP + DV  W++++ 
Sbjct: 249 EARELFDSRTEW------DAISWNALMAGYVQRSQIEEAQKMFNKMP-QRDVVSWNTMVS 301

Query: 514 GCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           G    GD    R    R+ ++ P  +   +  + S +A +G  E++  + D M +K+ 
Sbjct: 302 GYARRGDMAEAR----RLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNA 355



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 137/304 (45%), Gaps = 20/304 (6%)

Query: 263 ACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
           AC  G  D +VI  +  +  + + G   DA +LF+ +    T   NTM+  Y++ GR+  
Sbjct: 97  ACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQ 156

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A   FR++P     S+N+++  L  + S  +   LF  M       D  S   +IS+ AN
Sbjct: 157 ALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPV----KDSVSYNVMISSHAN 212

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFT 441
              + L    F     +  + D +    ++  Y + G    A   E+ ++  +   I++ 
Sbjct: 213 HGLVSLARHYFD----LAPEKDAVSWNGMLAAYVRNGRIQEA--RELFDSRTEWDAISWN 266

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           A+++       ++E QK F+ M  +     ++  ++ MV  +AR G + EA  L +  P 
Sbjct: 267 ALMAGYVQRSQIEEAQKMFNKMPQR-----DVVSWNTMVSGYARRGDMAEARRLFDVAPI 321

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
             DV  W++I+ G   +G     ++V + M +   +NA ++  + + +      E++  +
Sbjct: 322 R-DVFTWTAIVSGYAQNGMLEEAKRVFDAMPD---KNAVSWNAMMAAYVQRRMMEEAKEL 377

Query: 562 RDIM 565
            D M
Sbjct: 378 FDAM 381



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 110/241 (45%), Gaps = 30/241 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G QLH   +K G       + N LL MY +CG+  +A   F+EM  R
Sbjct: 458 VLSTCADIAALECGMQLHSRLIKAGYGVGCF-VGNALLAMYFKCGSMEEAHSAFEEMEER 516

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +  SWN MI G+ + G  +++L++F+ M + +    ++ + G     LAA       HS 
Sbjct: 517 DVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGV----LAACS-----HSG 567

Query: 131 ILVNGL--------DFDSVLGSS----LVNLYGKCGDFNSA-NQVLNMMKEPDDFCLSAL 177
           ++  G+        DF           +++L G+ G  + A N + +M  EPD     AL
Sbjct: 568 LVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGAL 627

Query: 178 ISGY-----ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
           +        +  G+ N A ++F+   + +  M+  + + Y S+ +  +   + H M   G
Sbjct: 628 LGASRIHRNSELGR-NAAEKIFELEPENAG-MYVLLSNIYASSGKWRDVDKMRHIMHERG 685

Query: 233 V 233
           V
Sbjct: 686 V 686


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 188/585 (32%), Positives = 296/585 (50%), Gaps = 74/585 (12%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG--FAKA 116
           +F+ +   NCF WN MI  +++      +  L+  M       +++++ +LI      ++
Sbjct: 34  IFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRS 93

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           +  A    KQ+H+H+L  G D D  + ++L+N +  C +   A +V N     D    ++
Sbjct: 94  EWEA----KQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNS 149

Query: 177 LISGYANCGKMNDAR-------------------------------RVFDRTTDTSSVMW 205
           +++GY   G + +A+                               ++FD   +   V W
Sbjct: 150 ILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTW 209

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
           +++I+ +  N    EA+  F  M + GV+ D     S LSAC++L  +  GK +H  + K
Sbjct: 210 SALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLK 269

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
           +G    + + +AL+  YSK G    A KLF E  + D I  N+MI+ Y  C  +++AK I
Sbjct: 270 IGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAI 329

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           F +MP K ++SW+SMI G +QN    E L LF  M     + D+ +L SVISACA +++L
Sbjct: 330 FDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAAL 389

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------YDALAL-- 424
           E G+ V A +   GL  + I+ T+L+D Y KCG                   ++AL L  
Sbjct: 390 EQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGL 449

Query: 425 ------------FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                       F+ M+   V P  ITF  +L AC H GLV EGQ  F +M   + I P 
Sbjct: 450 AMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPN 509

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           ++HY CMVDL  RAG L EA  L+ +MP   DV  W ++L  C  HGD  +GR+V  ++I
Sbjct: 510 VKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLI 569

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           EL P++   ++ LS+I+A+ G+W+    IR +M +  V K+PGCS
Sbjct: 570 ELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCS 614



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 171/362 (47%), Gaps = 45/362 (12%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
            RR+F+   +T+  MWN MI  YI  N    A  L+  M  N +  D  T   ++ ACS 
Sbjct: 31  TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSI 90

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
                  KQVH H  K+G   DV V + L++ +S     +DAC++F+E  V D++  N++
Sbjct: 91  RRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSI 150

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL------------- 356
           +  Y   G +E+AKHI+  MP +S+I+ NSMIV     G  +EA  L             
Sbjct: 151 LAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWS 210

Query: 357 ------------------FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
                             F  M+K+ + +D+    S +SACAN+  + +G+ + +    I
Sbjct: 211 ALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKI 270

Query: 399 GLDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
           G +S   +  +L+  Y KCG   +A  LF+E         +I++ +++S    C LV   
Sbjct: 271 GTESYINLQNALIYMYSKCGDIMVARKLFDE----AYLLDLISWNSMISGYLKCNLVDNA 326

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILR 513
           +  FD+M      + ++  +S M+  +A+    +E + L ++M    F+ D     S++ 
Sbjct: 327 KAIFDSMP-----EKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVIS 381

Query: 514 GC 515
            C
Sbjct: 382 AC 383



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 16/199 (8%)

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            I+  + IF  + N +   WN MI    Q  SP  A  L+ +M    L  D ++   +I 
Sbjct: 27  HIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQ 86

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKP 435
           AC+   S    +QV   V  +G DSD  +  +L++ +  C    DA  +FNE   + V  
Sbjct: 87  ACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNE---SSVLD 143

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE--IEHYSCMVDLFARAGCLNEAV 493
           + +++ +IL+     G V+E        K  YH  PE  I   + M+ LF   G + EA 
Sbjct: 144 S-VSWNSILAGYIEIGNVEEA-------KHIYHQMPERSIIASNSMIVLFGMRGLVVEAC 195

Query: 494 NLIEQMPFEADVGMWSSIL 512
            L ++M  E D+  WS+++
Sbjct: 196 KLFDEM-LEKDMVTWSALI 213


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 182/582 (31%), Positives = 297/582 (51%), Gaps = 47/582 (8%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-- 99
           A  L+  +   G   DA   FD +P  RR+    NAM+  F +      ++ +F+ +   
Sbjct: 97  ATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGS 156

Query: 100 ---QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
              + +D+S+  LIS   +    A  +  Q+H  +L +G      + ++L+ LY KC   
Sbjct: 157 GSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTP 216

Query: 157 NS---ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
            +   A +VL+ M + DD   + ++ GY   G +N AR VF+       V+WN+MISGY+
Sbjct: 217 EASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYV 276

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG---VID 270
            +    +A  LF +M    V  D  T  SVLSAC++ GF  HGK VHG   ++    V +
Sbjct: 277 QSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPE 336

Query: 271 DVI-VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
             + V +AL+  YSK G    A ++F  + + D +  NT+++ Y   G ++ A  +F+ M
Sbjct: 337 AALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVM 396

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           P K+ +SW  M+ G    G   +AL LF  M   D++   ++ A  I+AC  + +L+ G 
Sbjct: 397 PYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGR 456

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKC-------------------------------- 417
           Q+ A +   G ++      +L+  Y KC                                
Sbjct: 457 QLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHG 516

Query: 418 -GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
            G +AL LF++M   G+ P  I+F  IL+AC+H GLV EG  +F++MK  + I P  +HY
Sbjct: 517 HGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHY 576

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
           + ++DL  R+G + EA +LI+ MPFE    +W +IL GC  +GD   G   A+++  + P
Sbjct: 577 ARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIP 636

Query: 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           ++   YI LS+ ++ +G W  ++ +R +MR++ V K PGCSW
Sbjct: 637 QHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSW 678



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 205/472 (43%), Gaps = 74/472 (15%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT---DALLLFDEMPRRNCFSWNAMIEGF 82
           QLH   LK G   + L ++N L+ +YM+C  P    DA  + DEMP ++  +W  M+ G+
Sbjct: 186 QLHCSVLKSGA-AAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 244

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA---------------------- 120
           ++ G    +  +F  +  K D  WN +ISG+ ++ + A                      
Sbjct: 245 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 304

Query: 121 -----------LEYGKQIHSHILVNGLDFDS----VLGSSLVNLYGKCGDFNSANQVLNM 165
                        +GK +H  I+    +F       + ++LV LY K G    A ++ + 
Sbjct: 305 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 364

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
           M   D    + ++SGY + G ++ A  VF      + + W  M+SGY+      +AL LF
Sbjct: 365 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLF 424

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           ++MR   V     T A  ++AC  LG L+HG+Q+H H  + G        +ALL  Y+K 
Sbjct: 425 NQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC 484

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           G  +D                               A+ +F  MPN   +SWN+MI  L 
Sbjct: 485 GAVND-------------------------------ARLVFLVMPNLDSVSWNAMISALG 513

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQ 404
           Q+G   EAL+LF  M    +  D+ S  ++++AC +   ++ G   F  +    G+   +
Sbjct: 514 QHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGE 573

Query: 405 IISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                L+D   + G    A  + ++    +PT   + AILS C   G ++ G
Sbjct: 574 DHYARLIDLLGRSGRIGEAR-DLIKTMPFEPTPSIWEAILSGCRTNGDMEFG 624



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 155/377 (41%), Gaps = 102/377 (27%)

Query: 11  LLQSC-NTHHSIHVGKQLHLHFLK---KGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L +C N    +H GK +H   ++     +  + LP+ N L+ +Y + G    A  +FD 
Sbjct: 306 VLSACANAGFFVH-GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 364

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF------------- 113
           M  ++  SWN ++ G++  G  +K++++F VMP KND SW +++SG+             
Sbjct: 365 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLF 424

Query: 114 --------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                               A  +L AL++G+Q+H+H++  G +  +  G++L+ +Y KC
Sbjct: 425 NQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC 484

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           G  N A  V  +M   D    +A+IS     G                            
Sbjct: 485 GAVNDARLVFLVMPNLDSVSWNAMISALGQHG---------------------------- 516

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDV 272
                 EAL LF +M   G+  D  +  ++L+AC+  G ++ G           G+    
Sbjct: 517 ---HGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGI---- 569

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
              S   D Y++                        +I +    GRI +A+ + +TMP +
Sbjct: 570 ---SPGEDHYAR------------------------LIDLLGRSGRIGEARDLIKTMPFE 602

Query: 333 SLIS-WNSMIVGLSQNG 348
              S W +++ G   NG
Sbjct: 603 PTPSIWEAILSGCRTNG 619



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 12/191 (6%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY  A  + +C    ++  G+QLH H ++ G   S     N LL MY +CG   DA L+F
Sbjct: 436 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASN-SAGNALLTMYAKCGAVNDARLVF 494

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADL 118
             MP  +  SWNAMI    + GH  ++L+LF+ M      P +  F   +     A    
Sbjct: 495 LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVD 554

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSAL 177
               Y + +       G+       + L++L G+ G    A  ++  M  EP      A+
Sbjct: 555 EGFHYFESMKRDF---GISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAI 611

Query: 178 ISGYANCGKMN 188
           +SG    G M 
Sbjct: 612 LSGCRTNGDME 622


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  312 bits (799), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 202/683 (29%), Positives = 331/683 (48%), Gaps = 143/683 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    S+  GK++H   +  GI +    +  +L+ MY+ CG+      +FD++   
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGI-SVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 158

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
             F WN ++  + K+G+  +S+ LF  M +     N +++  ++  FA   L  ++  K+
Sbjct: 159 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAA--LGKVKECKR 216

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H ++L  G                    F S   V+N           +LI+ Y   G 
Sbjct: 217 VHGYVLKLG--------------------FGSNTAVVN-----------SLIAAYFKFGG 245

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  A  +FD  ++   V WNSMI+G + N      L +F +M   GV  D +TL SVL A
Sbjct: 246 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 305

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK---------------------- 284
           C+++G L  G+ +HG   K    ++V+ ++ LLD YSK                      
Sbjct: 306 CANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 365

Query: 285 ---------RGMPSDACKLFSELK-----------------------------VYDTILL 306
                     G+ SDA  LF E++                             V+  ++ 
Sbjct: 366 TSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 425

Query: 307 NTM----------ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           N M          I +Y+ CG +E+A+ +F  +P K ++SWN+MI G SQN  P EAL+L
Sbjct: 426 NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALEL 485

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F +M K   + D  ++A V+ ACA +++L+ G ++   +   G  SD  ++ +LVD Y K
Sbjct: 486 FLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAK 544

Query: 417 CGY---------------------------------DALALFNEMRNTGVKPTIITFTAI 443
           CG                                  +A++ FNEMR  G++P   +F+AI
Sbjct: 545 CGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAI 604

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L+AC H GL+ EG K+F++M+ +  ++P++EHY+C+VDL AR G L++A   IE MP + 
Sbjct: 605 LNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKP 664

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           D  +W  +L GC  H D  L  KVAE + EL+P+N   Y+ L++++A + +WE+   +R 
Sbjct: 665 DTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRK 724

Query: 564 IMREKHVGKLPGCSWAD-GIAFN 585
            M+++   + PGCSW + G  FN
Sbjct: 725 RMQKRGFKQNPGCSWIEVGGKFN 747



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    ++  G+++H H L++G   S L +A  L+ MY +CG    A LLFD +
Sbjct: 500 MACVLPACAGLAALDKGREIHGHILRRGYF-SDLHVACALVDMYAKCGLLVLAQLLFDMI 558

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS 105
           P+++  SW  MI G+   G   +++  FN M      P ++ FS
Sbjct: 559 PKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFS 602



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/359 (20%), Positives = 144/359 (40%), Gaps = 68/359 (18%)

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253
           F  TT + +   N+ I+ +    +   A+ L  K +   +    ++  SVL  C+    L
Sbjct: 53  FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYEL--GLNSYCSVLQLCAEKKSL 110

Query: 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
           E GK+VH           VI+++ +                       D  L   ++ +Y
Sbjct: 111 EDGKRVH----------SVIISNGI---------------------SVDEALGAKLVFMY 139

Query: 314 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
            +CG +   + IF  + N  +  WN ++   ++ G+  E++ LF  M KL +  + ++  
Sbjct: 140 VNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFT 199

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDALA-- 423
            V+   A +  ++  ++V   V  +G  S+  +  SL+  Y K G        +D L+  
Sbjct: 200 CVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEP 259

Query: 424 -----------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                                  +F +M   GV+  + T  ++L AC + G +  G+   
Sbjct: 260 DVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRA-L 318

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
                +     E+   + ++D++++ G LN A  +  +M  +  +  W+SI+   V  G
Sbjct: 319 HGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSIIAAYVREG 376


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 188/606 (31%), Positives = 302/606 (49%), Gaps = 101/606 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++CN   ++  GK++H    + G  ++ + +   +L MY +CG+  DAL         
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVG-WDTEIYVGTAILSMYTKCGSMEDAL--------- 367

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA---KADLAALEYGKQI 127
                                 ++F+++  +N  SW  +I+GFA   + D A L + K I
Sbjct: 368 ----------------------EVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
            S I  N + F S+LG+       K G     + ++      DD   +AL+S YA CG +
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQ-QIQDHIIEAGYGSDDRVRTALLSMYAKCGSL 464

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
            DA RVF++ +  + V WN+MI+ Y+ + +   AL  F  + + G+  ++ST  S+L+ C
Sbjct: 465 KDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVC 524

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
            S   LE GK VH    K G+  D+ V++AL                             
Sbjct: 525 KSSDSLELGKWVHFLIMKAGLESDLHVSNAL----------------------------- 555

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
             ++++ +CG +  AK++F  MP + L+SWN++I G  Q+G    A D F  M +  ++ 
Sbjct: 556 --VSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKP 613

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
           DK +   +++ACA+  +L  G ++ A +T    D D ++ T L+  Y KCG         
Sbjct: 614 DKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                    +AL LF +M+  GVKP  ITF   LSAC H GL++
Sbjct: 674 HKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIE 733

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG   F +MK +++I+P +EHY CMVDLF RAG LNEAV  I +M  E D  +W ++L  
Sbjct: 734 EGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGA 792

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H +  L  K A++ +ELDP +   ++ LS+I+A +G W++ + +R +M ++ V K P
Sbjct: 793 CQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKP 852

Query: 575 GCSWAD 580
           G SW +
Sbjct: 853 GQSWIE 858



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 153/580 (26%), Positives = 261/580 (45%), Gaps = 118/580 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C    ++  G++++ H  K G+    + + N L+ MY +CGN   A  +FD+M  +
Sbjct: 116 LLQLCIKFKNLGDGERIYNHIKKSGV-QPDIFMWNTLINMYAKCGNTISAKQIFDDMREK 174

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYG 124
           + +SWN ++ G+++ G  E++ +L       +V P K  F  +ML    A AD   ++ G
Sbjct: 175 DVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFV-SML---NACADARNVDKG 230

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +++++ IL  G D D  +G++L+N++ KCGD   A +V + +   D    +++I+G A  
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G+                                 +A  LF +M   GV  D     S+L
Sbjct: 291 GRFK-------------------------------QACNLFQRMEEEGVQPDKVAFVSLL 319

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+    LE GK+VH    +VG   ++ V +A+L  Y+K G   DA ++F  +K  + +
Sbjct: 320 RACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVV 379

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
               MI  ++  GRI++A            + +N MI       S IE            
Sbjct: 380 SWTAMIAGFAQHGRIDEA-----------FLFFNKMI------ESGIEP----------- 411

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
              ++ +  S++ AC++ S+L+ G+Q+   +   G  SD  + T+L+  Y KCG      
Sbjct: 412 ---NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468

Query: 419 --------------------------YD-ALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                     YD ALA F  +   G+KP   TFT+IL+ C    
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSD 528

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            ++ G KW   +  +  ++ ++   + +V +F   G L  A NL   MP + D+  W++I
Sbjct: 529 SLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTI 586

Query: 512 LRGCVAHGDKGLGRKVAERMIE--LDPE--------NACA 541
           + G V HG   +     + M E  + P+        NACA
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA 626



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 197/453 (43%), Gaps = 107/453 (23%)

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVL----------------------------------- 163
           D+   ++++N   K G FN A QVL                                   
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 164 NMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
           N +K    +PD F  + LI+ YA CG    A+++FD   +     WN ++ GY+ +    
Sbjct: 134 NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           EA  L  +M ++ V  D  T  S+L+AC+    ++ G++++    K G   D+ V +AL+
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
           + + K G   DA K+F  L   D +   +MIT                            
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTRDLVTWTSMIT---------------------------- 285

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
              GL+++G   +A +LF  M +  ++ DK +  S++ AC +  +LE G++V AR+  +G
Sbjct: 286 ---GLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342

Query: 400 LDSDQIISTSLVDFYCKCGY---------------------------------DALALFN 426
            D++  + T+++  Y KCG                                  +A   FN
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFN 402

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFAR 485
           +M  +G++P  +TF +IL AC     +K GQ+  D  ++  Y  D  +   + ++ ++A+
Sbjct: 403 KMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAK 460

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
            G L +A  + E++  + +V  W++++   V H
Sbjct: 461 CGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQH 492



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 178/414 (42%), Gaps = 71/414 (17%)

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           VF    DT     N++++      +  EA+ +  ++  + +     T +++L  C     
Sbjct: 68  VFADIKDTQKA--NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L  G++++ H  K GV  D+ + + L++ Y+K                            
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMWNTLINMYAK---------------------------- 157

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
              CG    AK IF  M  K + SWN ++ G  Q+G   EA  L   M +  ++ DK + 
Sbjct: 158 ---CGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTF 214

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDALA- 423
            S+++ACA+  +++ G +++  +   G D+D  + T+L++ + KCG        +D L  
Sbjct: 215 VSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPT 274

Query: 424 ------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                                   LF  M   GV+P  + F ++L AC+H   +++G+K 
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
              MK +   D EI   + ++ ++ + G + +A+ + + +    +V  W++++ G   HG
Sbjct: 335 HARMK-EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR-NVVSWTAMIAGFAQHG 392

Query: 520 DKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
                     +MIE  ++P N   ++ +    ++    ++   I+D + E   G
Sbjct: 393 RIDEAFLFFNKMIESGIEP-NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 188/606 (31%), Positives = 302/606 (49%), Gaps = 101/606 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++CN   ++  GK++H    + G  ++ + +   +L MY +CG+  DAL         
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVG-WDTEIYVGTAILSMYTKCGSMEDAL--------- 367

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA---KADLAALEYGKQI 127
                                 ++F+++  +N  SW  +I+GFA   + D A L + K I
Sbjct: 368 ----------------------EVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
            S I  N + F S+LG+       K G     + ++      DD   +AL+S YA CG +
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQ-QIQDHIIEAGYGSDDRVRTALLSMYAKCGSL 464

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
            DA RVF++ +  + V WN+MI+ Y+ + +   AL  F  + + G+  ++ST  S+L+ C
Sbjct: 465 KDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVC 524

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
            S   LE GK VH    K G+  D+ V++AL                             
Sbjct: 525 KSSDSLELGKWVHFLIMKAGLESDLHVSNAL----------------------------- 555

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
             ++++ +CG +  AK++F  MP + L+SWN++I G  Q+G    A D F  M +  ++ 
Sbjct: 556 --VSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKP 613

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
           DK +   +++ACA+  +L  G ++ A +T    D D ++ T L+  Y KCG         
Sbjct: 614 DKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                    +AL LF +M+  GVKP  ITF   LSAC H GL++
Sbjct: 674 HKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIE 733

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG   F +MK +++I+P +EHY CMVDLF RAG LNEAV  I +M  E D  +W ++L  
Sbjct: 734 EGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGA 792

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H +  L  K A++ +ELDP +   ++ LS+I+A +G W++ + +R +M ++ V K P
Sbjct: 793 CQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKP 852

Query: 575 GCSWAD 580
           G SW +
Sbjct: 853 GQSWIE 858



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 146/548 (26%), Positives = 250/548 (45%), Gaps = 108/548 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C    ++  G++++ H  K G+    + + N L+ MY +CGN   A  +FD+M  +
Sbjct: 116 LLQLCIKFKNLGDGERIYNHIKKSGV-QPDIFMRNTLINMYAKCGNTISAKQIFDDMREK 174

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYG 124
           + +SWN ++ G+++ G  E++ +L       +V P K  F  +ML    A AD   ++ G
Sbjct: 175 DVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFV-SML---NACADARNVDKG 230

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +++++ IL  G D D  +G++L+N++ KCGD   A +V + +   D    +++I+G A  
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G+                                 +A  LF +M   GV  D     S+L
Sbjct: 291 GRFK-------------------------------QACNLFQRMEEEGVQPDKVAFVSLL 319

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+    LE GK+VH    +VG   ++ V +A+L  Y+K G   DA ++F  +K  + +
Sbjct: 320 RACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVV 379

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
               MI  ++  GRI++A            + +N MI       S IE            
Sbjct: 380 SWTAMIAGFAQHGRIDEA-----------FLFFNKMI------ESGIEP----------- 411

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
              ++ +  S++ AC++ S+L+ G+Q+   +   G  SD  + T+L+  Y KCG      
Sbjct: 412 ---NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468

Query: 419 --------------------------YD-ALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                     YD ALA F  +   G+KP   TFT+IL+ C    
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSD 528

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            ++ G KW   +  +  ++ ++   + +V +F   G L  A NL   MP + D+  W++I
Sbjct: 529 SLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTI 586

Query: 512 LRGCVAHG 519
           + G V HG
Sbjct: 587 IAGFVQHG 594



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 197/453 (43%), Gaps = 107/453 (23%)

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVL----------------------------------- 163
           D+   ++++N   K G FN A QVL                                   
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 164 NMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
           N +K    +PD F  + LI+ YA CG    A+++FD   +     WN ++ GY+ +    
Sbjct: 134 NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           EA  L  +M ++ V  D  T  S+L+AC+    ++ G++++    K G   D+ V +AL+
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
           + + K G   DA K+F  L   D +   +MIT                            
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTRDLVTWTSMIT---------------------------- 285

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
              GL+++G   +A +LF  M +  ++ DK +  S++ AC +  +LE G++V AR+  +G
Sbjct: 286 ---GLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342

Query: 400 LDSDQIISTSLVDFYCKCGY---------------------------------DALALFN 426
            D++  + T+++  Y KCG                                  +A   FN
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFN 402

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFAR 485
           +M  +G++P  +TF +IL AC     +K GQ+  D  ++  Y  D  +   + ++ ++A+
Sbjct: 403 KMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAK 460

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
            G L +A  + E++  + +V  W++++   V H
Sbjct: 461 CGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQH 492



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 178/414 (42%), Gaps = 71/414 (17%)

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           VF    DT     N++++      +  EA+ +  ++  + +     T +++L  C     
Sbjct: 68  VFADIKDTQKA--NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L  G++++ H  K GV  D+ + + L++ Y+K                            
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMRNTLINMYAK---------------------------- 157

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
              CG    AK IF  M  K + SWN ++ G  Q+G   EA  L   M +  ++ DK + 
Sbjct: 158 ---CGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTF 214

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDALA- 423
            S+++ACA+  +++ G +++  +   G D+D  + T+L++ + KCG        +D L  
Sbjct: 215 VSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPT 274

Query: 424 ------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                                   LF  M   GV+P  + F ++L AC+H   +++G+K 
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
              MK +   D EI   + ++ ++ + G + +A+ + + +    +V  W++++ G   HG
Sbjct: 335 HARMK-EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR-NVVSWTAMIAGFAQHG 392

Query: 520 DKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
                     +MIE  ++P N   ++ +    ++    ++   I+D + E   G
Sbjct: 393 RIDEAFLFFNKMIESGIEP-NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 204/678 (30%), Positives = 315/678 (46%), Gaps = 143/678 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C   +++ + K +H    +    +  L I + L+++Y   G   DA  LFDE+P R
Sbjct: 183 VIKACGGLNNVPLCKMVH-ELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVR 241

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +C  WN M+ G++K G    +L  F  M     + N  S+  L+S    A    +  G Q
Sbjct: 242 DCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLS--VCATRGIVRAGIQ 299

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  ++ +G + D  + ++++ +Y K                               CG 
Sbjct: 300 LHGLVIRSGFESDPTVANTIITMYSK-------------------------------CGN 328

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + DAR++FD    T +V WN +I+GY+ N    EA+ LF  M  +GV  D+ T AS L +
Sbjct: 329 LFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPS 388

Query: 247 CSSLGFLEHGKQVHGHACKVGV-------------------------------IDDVIVA 275
               G L++ K+VH +  + GV                               + DV V 
Sbjct: 389 VLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVC 448

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLN--TMITVYSSC----------------- 316
           +A++  Y   G+  +A  LF  L + + ++ N  TM +V  +C                 
Sbjct: 449 TAMISGYVLNGLNVEALNLFRWL-IQEGMVPNCLTMASVLPACAALASLKLGKELHCDIL 507

Query: 317 ---------------------GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                                GR++ A   FR MP K  + WN MIV  SQNG P  A+D
Sbjct: 508 KKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAID 567

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  M     + D  SL++ +SACAN  +L  G+++   V      SD  ++++L+D Y 
Sbjct: 568 LFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYS 627

Query: 416 KCGYDALA---------------------------------LFNEMRNTGVKPTIITFTA 442
           KCG  ALA                                 LF+EM   G++P  +TF  
Sbjct: 628 KCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLV 687

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           I+SAC H GLV EG  +F  M  +Y I   +EH++CMVDL+ RAG L+EA + I+ MPF 
Sbjct: 688 IMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFT 747

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
            D G W S+L  C  HG+  L +  ++ ++ELDP N+  Y+ LS++ A +GEWE    +R
Sbjct: 748 PDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVR 807

Query: 563 DIMREKHVGKLPGCSWAD 580
            +M+EK V K+PG SW D
Sbjct: 808 SLMKEKGVQKIPGYSWID 825



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 219/504 (43%), Gaps = 75/504 (14%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           +Q+H   L  G +N +L + +R+L MY+ C +  D   LF  +       WN +I GF  
Sbjct: 96  RQIHAKVLVCG-MNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSM 154

Query: 85  LGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
           LG  + +L  F      NV P K  F + +   G     L  +   K +H      G   
Sbjct: 155 LGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACG----GLNNVPLCKMVHELARSMGFHM 210

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D  +GSSL+ LY                                + G ++DA+ +FD   
Sbjct: 211 DLFIGSSLIKLY-------------------------------TDNGYIHDAKYLFDELP 239

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
               ++WN M++GY+ N +   AL  F +MR + V  ++ +   +LS C++ G +  G Q
Sbjct: 240 VRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQ 299

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +HG   + G   D  VA+ ++  YSK G   DA K+F  +   DT+  N +I  Y   G 
Sbjct: 300 LHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGF 359

Query: 319 IEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            ++A  +F+ M    +    I++ S +  + ++GS     ++   + +  +  D +  ++
Sbjct: 360 TDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSA 419

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTG 432
           ++        +E+  + F + T++    D  + T+++  Y   G   +AL LF  +   G
Sbjct: 420 LVDIYFKGGDVEMACKTFQQNTLV----DVAVCTAMISGYVLNGLNVEALNLFRWLIQEG 475

Query: 433 VKPTIITFTAILSACD-----------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           + P  +T  ++L AC            HC ++K+G            ++   +  S +  
Sbjct: 476 MVPNCLTMASVLPACAALASLKLGKELHCDILKKG------------LENVCQVGSSITY 523

Query: 482 LFARAGCLNEAVNLIEQMPFEADV 505
           ++A++G L+ A     +MP +  V
Sbjct: 524 MYAKSGRLDLAYQFFRRMPVKDSV 547



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 148/340 (43%), Gaps = 52/340 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    S+ +GK+LH   LKKG+ N    + + +  MY + G    A   F  M
Sbjct: 483 MASVLPACAALASLKLGKELHCDILKKGLEN-VCQVGSSITYMYAKSGRLDLAYQFFRRM 541

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
           P ++   WN MI  F + G  E ++ LF  M     + +  S +  +S  A A+  AL Y
Sbjct: 542 PVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLS--ACANYPALYY 599

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK++H  ++ N    D+ + S+L+++Y KCG    A  V +MM   ++   +++I+ Y N
Sbjct: 600 GKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGN 659

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G+                                 E L LFH+M   G+  D  T   +
Sbjct: 660 HGR-------------------------------PRECLDLFHEMVEAGIQPDHVTFLVI 688

Query: 244 LSACSSLGFLEHGKQVHGHAC---KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SAC   G ++ G  ++   C   + G+   +   + ++D Y + G   +A      +  
Sbjct: 689 MSACGHAGLVDEG--IYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPF 746

Query: 301 YDTILLNTMITVYSSC---GRIEDA----KHIFRTMPNKS 333
             T    T  ++  +C   G +E A    KH+    PN S
Sbjct: 747 --TPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNS 784


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 195/604 (32%), Positives = 290/604 (48%), Gaps = 87/604 (14%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH   +K G +       N LL +Y +  N   A  +F+E+P+ + FSW  +I GF ++G
Sbjct: 310 LHAKLIKNGCVGIR---GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIG 366

Query: 87  HKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVL 142
                L LF  M  +    N F+ ++++     +++     GK IH  IL NGLD D+VL
Sbjct: 367 LSADVLGLFTKMQDQGVCPNQFTLSIVLKS-CSSNVNDSRIGKGIHGWILRNGLDLDAVL 425

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
            +S+++ Y KC  F  A ++  +M E D    + ++S Y   G M  +  +F +     +
Sbjct: 426 NNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDA 485

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
             WN+MI G + N  +  AL L +KM   G   +  T +  L   SSL  L  GKQ+H  
Sbjct: 486 ASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQ 545

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
             KVGV+DD  V ++L+D Y K                               CG +E A
Sbjct: 546 VLKVGVLDDGFVRNSLIDMYCK-------------------------------CGEMEKA 574

Query: 323 KHIFRTMPNKS---------------LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
             IF+ +P +S                +SW+SM+ G  QNG   +AL  F  M    + +
Sbjct: 575 SVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEV 634

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------- 417
           DKF+L SV+SACA+   LELG QV   +  IG   D  + +S++D Y KC          
Sbjct: 635 DKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIF 694

Query: 418 -----------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                  G +A+ LF  M N G+ P  ++F  +L+AC H GL++
Sbjct: 695 NQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLE 754

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG K+F  M+  Y I P  EH++CMVDL+ RAG LNE    I          +W S L  
Sbjct: 755 EGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSS 814

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H +  +G  V ++++EL+P +A  YI  SSI AT   WE+++ IR +M+++ V K P
Sbjct: 815 CRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNP 874

Query: 575 GCSW 578
             SW
Sbjct: 875 SQSW 878



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 115/253 (45%), Gaps = 53/253 (20%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF--------- 73
           +GKQ+H   LK G+L+    + N L+ MY +CG    A ++F  +P+ +           
Sbjct: 538 LGKQIHTQVLKVGVLDDGF-VRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDD 596

Query: 74  ------SWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
                 SW++M+ G+++ G  E +L+ F+ M     + + F+   ++S  A A    LE 
Sbjct: 597 AVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASA--GVLEL 654

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+H +I   G   D  LGSS++++Y KCG  N A  + N  K+ +    +++ISG A 
Sbjct: 655 GRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCAL 714

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G                               +  EA+ LF  M   G+  +  +   V
Sbjct: 715 HG-------------------------------QGREAVRLFELMINEGITPNEVSFVGV 743

Query: 244 LSACSSLGFLEHG 256
           L+ACS  G LE G
Sbjct: 744 LTACSHAGLLEEG 756


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 180/596 (30%), Positives = 291/596 (48%), Gaps = 101/596 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y + G   DA  +F++MP ++  S+N+M+ G+ + G    +LQ F  M ++N  
Sbjct: 146 NAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVV 205

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SWN++++G+ K+                                     GD +SA Q+  
Sbjct: 206 SWNLMVAGYVKS-------------------------------------GDLSSAWQLFE 228

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
            +  P+      ++ G A  GKM +AR +FDR    + V WN+MI+ Y+ + +  EA+ L
Sbjct: 229 KIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKL 288

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-ACK--------------VGVI 269
           F KM      +D+ +  ++++    +G L+  +QV+    CK               G I
Sbjct: 289 FKKMPH----KDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRI 344

Query: 270 D------------DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           D            DV+  ++++  YS+ G   +A  LF ++ + +++  NTMI+ Y+  G
Sbjct: 345 DEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAG 404

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
           +++ A  IF+ M  K+++SWNS+I G  QN   ++AL     M K   + D+ + A  +S
Sbjct: 405 QMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLS 464

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------ 419
           ACAN+++L++G Q+   +   G  +D  +  +L+  Y KCG                   
Sbjct: 465 ACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLIS 524

Query: 420 ---------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                           A   F +M +  V P  +TF  +LSAC H GL  +G   F  M 
Sbjct: 525 WNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMI 584

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             + I+P  EHYSC+VDL  R G L EA N +  M  +A+ G+W S+L  C  H +  LG
Sbjct: 585 EDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELG 644

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           R  AER+ EL+P NA  YI LS++ A +G WE+   +R +MR K  GK PGCSW +
Sbjct: 645 RFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIE 700



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 123/548 (22%), Positives = 233/548 (42%), Gaps = 81/548 (14%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           NR +    + G   +A+ +F  M  +N  ++N+MI    K      + QLF+ M  +N  
Sbjct: 21  NRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLV 80

Query: 105 SWNMLISGFAKADLAA------------------------LEYGKQIHSHILVNGL--DF 138
           SWN +I+G+   ++                             GK   +  L+  +    
Sbjct: 81  SWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLELVPDKL 140

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D+   ++++  Y K G FN A +V   M   D    +++++GY   GKM+ A + F+  T
Sbjct: 141 DTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMT 200

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           + + V WN M++GY+ + + + A  LF K+       +A +  ++L   +  G +   ++
Sbjct: 201 ERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPN----PNAVSWVTMLCGLAKYGKMAEARE 256

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +           +V+  +A++ TY +     +A KLF ++   D++   T+I  Y   G+
Sbjct: 257 LFDRMPS----KNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGK 312

Query: 319 IEDAKHIFRTMPNKSL-------------------------------ISWNSMIVGLSQN 347
           +++A+ ++  MP K +                               + WNSMI G S++
Sbjct: 313 LDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRS 372

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
           G   EAL+LF  M       +  S  ++IS  A    ++   ++F       +    I+S
Sbjct: 373 GRMDEALNLFRQMPI----KNSVSWNTMISGYAQAGQMDRATEIFQ-----AMREKNIVS 423

Query: 408 -TSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AM 463
             SL+  + +     DAL     M   G KP   TF   LSAC +   ++ G +  +  +
Sbjct: 424 WNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYIL 483

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
           K  Y  D  + +   ++ ++A+ G +  A  +   +    D+  W+S++ G   +G    
Sbjct: 484 KSGYMNDLFVGN--ALIAMYAKCGRVQSAEQVFRDIEC-VDLISWNSLISGYALNGYANK 540

Query: 524 GRKVAERM 531
             K  E+M
Sbjct: 541 AFKAFEQM 548



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 210/467 (44%), Gaps = 66/467 (14%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS 129
           ++ F+ N  I    KLG  E+++++F  M  KN  ++N +IS  AK   A +   +Q+  
Sbjct: 15  KHAFNHNRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKN--ARIRDARQLFD 72

Query: 130 HI-LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            + L N + +++++   L N          A+++ ++M E D+F  + +I+ Y   GK+ 
Sbjct: 73  QMSLRNLVSWNTMIAGYLHN-----NMVEEASELFDVMPERDNFSWALMITCYTRKGKLE 127

Query: 189 DARRVFDRTTDT-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
            AR + +   D   +  WN+MI+GY    +  +A  +F +M    ++   S LA      
Sbjct: 128 KARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLA------ 181

Query: 248 SSLGFLEHGK-QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
              G+ ++GK  +     +     +V+  + ++  Y K G  S A +LF ++   + +  
Sbjct: 182 ---GYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSW 238

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
            TM+   +  G++ +A+ +F  MP+K+++SWN+MI    Q+    EA+ LF  M      
Sbjct: 239 VTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMP----H 294

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFN 426
            D  S  ++I+    +  L+   QV+ ++                   CK          
Sbjct: 295 KDSVSWTTIINGYIRVGKLDEARQVYNQMP------------------CK---------- 326

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
                     I   TA++S     G + E  + F  +        ++  ++ M+  ++R+
Sbjct: 327 ---------DITAQTALMSGLIQNGRIDEADQMFSRIGAH-----DVVCWNSMIAGYSRS 372

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           G ++EA+NL  QMP +  V  W++++ G    G      ++ + M E
Sbjct: 373 GRMDEALNLFRQMPIKNSVS-WNTMISGYAQAGQMDRATEIFQAMRE 418



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ VG QLH + LK G +N  L + N L+ MY +CG    A  +F ++   +
Sbjct: 463 LSACANLAALQVGNQLHEYILKSGYMND-LFVGNALIAMYAKCGRVQSAEQVFRDIECVD 521

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM 98
             SWN++I G+   G+  K+ + F  M
Sbjct: 522 LISWNSLISGYALNGYANKAFKAFEQM 548


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 179/601 (29%), Positives = 302/601 (50%), Gaps = 80/601 (13%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N+ +  +MR G+   AL +F+ MPRR+  S+NAMI G+++      +  LF+ MP+++ F
Sbjct: 50  NKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLF 109

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGL-DFDSVLGSSLVNLYGKCGDFNSANQVL 163
           SWN++++G+ +             +H L + +   D V  +++++ Y + G  + A +V 
Sbjct: 110 SWNVMLTGYVRNRRLG-------EAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVF 162

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
           N M   +    + L++ Y + G++ +ARR+F+  ++   + WN ++ GY+  N   +A  
Sbjct: 163 NKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQ 222

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           LF +M     + D  +  +++S  + +G L   K++   +     I DV   +A++  Y 
Sbjct: 223 LFDRM----PVRDVISWNTMISGYAQVGDLSQAKRLFNES----PIRDVFTWTAMVSGYV 274

Query: 284 KRGMPSDACKLFSELKV-----YDTIL--------------------------LNTMITV 312
           + GM  +A K F E+ V     Y+ +L                           NTMIT 
Sbjct: 275 QNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITG 334

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           Y   G I  A+ +F  MP +  +SW ++I G +QNG   EAL++F  M +     ++ + 
Sbjct: 335 YGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTF 394

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
           +  +S CA+I++LELG+QV  +V   G ++   +  +L+  Y KCG              
Sbjct: 395 SCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEE 454

Query: 419 -------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                                AL LF  M+  GVKP  IT   +LSAC H GL+  G ++
Sbjct: 455 KDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEY 514

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           F +M   Y++ P  +HY+CM+DL  RAG L EA NL+  MPF+     W ++L     HG
Sbjct: 515 FYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHG 574

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579
           +  LG K AE + +++P+N+  Y+ LS+++A SG W     +R  MRE  V K+ G SW 
Sbjct: 575 NTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWV 634

Query: 580 D 580
           +
Sbjct: 635 E 635



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 215/474 (45%), Gaps = 53/474 (11%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H G+      L +   N  L   N L+  Y++     DA  LFD MP R+  SWN MI 
Sbjct: 181 VHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMIS 240

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
           G+ ++G   ++ +LFN  P ++ F+W  ++SG+ +  +   E  K      + N + +++
Sbjct: 241 GYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVD-EARKYFDEMPVKNEISYNA 299

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
           +L       Y +      A ++   M   +    + +I+GY   G +  AR++FD     
Sbjct: 300 MLAG-----YVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQR 354

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             V W ++ISGY  N    EAL +F +M+R+G   + ST +  LS C+ +  LE GKQVH
Sbjct: 355 DCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVH 414

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G   K G      V +ALL  Y K G   +A  +F  ++  D +  NTMI          
Sbjct: 415 GQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIA--------- 465

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
                                 G +++G   +AL LF +M K  ++ D+ ++  V+SAC+
Sbjct: 466 ----------------------GYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACS 503

Query: 381 NISSLELGEQVFARVTIIGLDSDQIIS------TSLVDFYCKCGYDALALFNEMRNTGVK 434
           +   ++ G + F       +D D  +       T ++D   + G    A  N MRN    
Sbjct: 504 HSGLIDRGTEYF-----YSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAE-NLMRNMPFD 557

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH-YSCMVDLFARAG 487
           P   ++ A+L A    G  + G+K   A +  + ++P+    Y  + +L+A +G
Sbjct: 558 PGAASWGALLGASRIHGNTELGEK---AAEMVFKMEPQNSGMYVLLSNLYAASG 608



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 188/436 (43%), Gaps = 60/436 (13%)

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D D V  +  ++ + + G  +SA +V N M        +A+ISGY    K + AR +FD+
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             +     WN M++GY+ N    EA  LF  M +    +D  +  ++LS  +  GF++  
Sbjct: 103 MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPK----KDVVSWNAMLSGYAQNGFVDEA 158

Query: 257 KQVHGHACKVGVID---------------------------DVIVASALLDTYSKRGMPS 289
           ++V         I                            ++I  + L+  Y KR M  
Sbjct: 159 REVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLG 218

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA +LF  + V D I  NTMI+ Y+  G +  AK +F   P + + +W +M+ G  QNG 
Sbjct: 219 DARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGM 278

Query: 350 PIEALDLFCNM---NKLD--------LRMDKFSLASVI---SACANISSL--------EL 387
             EA   F  M   N++         ++  K  +A  +     C NISS         + 
Sbjct: 279 VDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQN 338

Query: 388 GEQVFARVTIIGLDSDQIIS-TSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAIL 444
           G    AR     +     +S  +++  Y + G+  +AL +F EM+  G      TF+  L
Sbjct: 339 GGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCAL 398

Query: 445 SACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           S C     ++ G++     +K  +     +   + ++ ++ + G  +EA ++ E +  E 
Sbjct: 399 STCADIAALELGKQVHGQVVKAGFETGCFVG--NALLGMYFKCGSTDEANDVFEGIE-EK 455

Query: 504 DVGMWSSILRGCVAHG 519
           DV  W++++ G   HG
Sbjct: 456 DVVSWNTMIAGYARHG 471



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 176/395 (44%), Gaps = 64/395 (16%)

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           K+PD    +  IS +   G  + A RVF+     SSV +N+MISGY+ N + + A  LF 
Sbjct: 42  KDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFD 101

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
           KM                                          D+   + +L  Y +  
Sbjct: 102 KMPER---------------------------------------DLFSWNVMLTGYVRNR 122

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
              +A KLF  +   D +  N M++ Y+  G +++A+ +F  MP+++ ISWN ++     
Sbjct: 123 RLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVH 182

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           NG   EA  LF + +  +L     S   ++      + L    Q+F R+ +     D I 
Sbjct: 183 NGRLKEARRLFESQSNWEL----ISWNCLMGGYVKRNMLGDARQLFDRMPV----RDVIS 234

Query: 407 STSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
             +++  Y + G    A  LFNE   + ++  + T+TA++S     G+V E +K+FD M 
Sbjct: 235 WNTMISGYAQVGDLSQAKRLFNE---SPIR-DVFTWTAMVSGYVQNGMVDEARKYFDEMP 290

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
            +  I      Y+ M+  + +   +  A  L E MP   ++  W++++ G   +G  G G
Sbjct: 291 VKNEIS-----YNAMLAGYVQYKKMVIAGELFEAMPCR-NISSWNTMITG---YGQNG-G 340

Query: 525 RKVAERMIELDPENAC-AYIQLSSIFATSGEWEKS 558
              A ++ ++ P+  C ++  + S +A +G +E++
Sbjct: 341 IAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEA 375



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 110/228 (48%), Gaps = 24/228 (10%)

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           + K  D +  N  I+ +   G  + A  +F +MP +S +S+N+MI G  +N     A DL
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDL 99

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M + DL    FS   +++       L    ++F  +       D +   +++  Y +
Sbjct: 100 FDKMPERDL----FSWNVMLTGYVRNRRLGEAHKLFDLMP----KKDVVSWNAMLSGYAQ 151

Query: 417 CGY--DALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
            G+  +A  +FN+M  RN+      I++  +L+A  H G +KE ++ F++       + E
Sbjct: 152 NGFVDEAREVFNKMPHRNS------ISWNGLLAAYVHNGRLKEARRLFESQS-----NWE 200

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
           +  ++C++  + +   L +A  L ++MP   DV  W++++ G    GD
Sbjct: 201 LISWNCLMGGYVKRNMLGDARQLFDRMPVR-DVISWNTMISGYAQVGD 247



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   +K G       + N LL MY +CG+  +A  +F+ +  ++
Sbjct: 398 LSTCADIAALELGKQVHGQVVKAGFETGCF-VGNALLGMYFKCGSTDEANDVFEGIEEKD 456

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
             SWN MI G+ + G   ++L LF  M +
Sbjct: 457 VVSWNTMIAGYARHGFGRQALVLFESMKK 485


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 184/613 (30%), Positives = 305/613 (49%), Gaps = 100/613 (16%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           + RID   L+  L++C    +   G  LH   +K G++NS   + + LL MYM+ G    
Sbjct: 111 ELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVF-VGSALLDMYMKIGEIGR 169

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDF-SWNMLISGFAKAD 117
           +  +FDEMP RN  +W A+I G ++ G+ E  L  F+ M + K ++ S+   I+  A AD
Sbjct: 170 SCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASAD 229

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
             AL +G+ IH+  L  G D +S + +SL  +Y K                         
Sbjct: 230 SGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNK------------------------- 264

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                 CGK++     F +      V W ++++ YI   ++   L  F +MR + V+ + 
Sbjct: 265 ------CGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNE 318

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T ++V+S C++   L+ G+Q+H H   VG ++ + VA                      
Sbjct: 319 YTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVA---------------------- 356

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                    N+++T+YS CG +     +F +M  + +I+W+++I   SQ G   EA +  
Sbjct: 357 ---------NSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYL 407

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M     + ++F+LASV+S C +++ LE G+Q+ A V  +GL+   ++ ++L+  Y KC
Sbjct: 408 SRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKC 467

Query: 418 G---------------------------------YDALALFNEMRNTGVKPTIITFTAIL 444
           G                                  +A+ LF  ++  G++P  +TF  +L
Sbjct: 468 GSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVL 527

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           +AC H G+V  G  +F++M   YHI P  EHY CM+DL  RAG L++A  LI  MP + D
Sbjct: 528 TACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWD 587

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
             +WS++LR C  HGD   G++ A  +++LDP  A  +I L++IFA  G+W++++ IR +
Sbjct: 588 DVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRML 647

Query: 565 MREKHVGKLPGCS 577
           M+ K V K PG S
Sbjct: 648 MKSKGVVKEPGWS 660



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 163/386 (42%), Gaps = 72/386 (18%)

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLS 245
           + DAR +FD+      V W ++ISGY+++++ +EAL LF KMR    L  D   L+  L 
Sbjct: 65  LKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLK 124

Query: 246 ACS-SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            C   L +L +G  +HG + K G+++ V V SALLD Y K G    +CK+F E       
Sbjct: 125 TCGLGLNYL-YGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDE------- 176

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                                   MP ++ ++W ++I GL + G     L  F  M +  
Sbjct: 177 ------------------------MPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSK 212

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---YD- 420
           +  D ++ A  + A A+  +L  G  +  +    G D +  ++ SL   Y KCG   Y  
Sbjct: 213 VEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGL 272

Query: 421 -----------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                         L  F  MR + V P   TF+A++S C +  
Sbjct: 273 HTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFA 332

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            +K G++    +     ++  +   + ++ L+++ G L     +   M F  D+  WS+I
Sbjct: 333 RLKWGEQLHAHVLCVGFVNA-LSVANSIMTLYSKCGELASVSKVFCSMKFR-DIITWSTI 390

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPE 537
           +    A+   G G +  E +  +  E
Sbjct: 391 I---AAYSQVGYGEEAFEYLSRMRSE 413


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 184/613 (30%), Positives = 305/613 (49%), Gaps = 100/613 (16%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           + RID   L+  L++C    +   G  LH   +K G++NS   + + LL MYM+ G    
Sbjct: 111 ELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVF-VGSALLDMYMKIGEIGR 169

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDF-SWNMLISGFAKAD 117
           +  +FDEMP RN  +W A+I G ++ G+ E  L  F+ M + K ++ S+   I+  A AD
Sbjct: 170 SCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASAD 229

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
             AL +G+ IH+  L  G D +S + +SL  +Y K                         
Sbjct: 230 SGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNK------------------------- 264

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                 CGK++     F +      V W ++++ YI   ++   L  F +MR + V+ + 
Sbjct: 265 ------CGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNE 318

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T ++V+S C++   L+ G+Q+H H   VG ++ + VA                      
Sbjct: 319 YTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVA---------------------- 356

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                    N+++T+YS CG +     +F +M  + +I+W+++I   SQ G   EA +  
Sbjct: 357 ---------NSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYL 407

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M     + ++F+LASV+S C +++ LE G+Q+ A V  +GL+   ++ ++L+  Y KC
Sbjct: 408 SRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKC 467

Query: 418 G---------------------------------YDALALFNEMRNTGVKPTIITFTAIL 444
           G                                  +A+ LF  ++  G++P  +TF  +L
Sbjct: 468 GSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVL 527

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           +AC H G+V  G  +F++M   YHI P  EHY CM+DL  RAG L++A  LI  MP + D
Sbjct: 528 TACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWD 587

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
             +WS++LR C  HGD   G++ A  +++LDP  A  +I L++IFA  G+W++++ IR +
Sbjct: 588 DVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRML 647

Query: 565 MREKHVGKLPGCS 577
           M+ K V K PG S
Sbjct: 648 MKSKGVVKEPGWS 660



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 163/386 (42%), Gaps = 72/386 (18%)

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLS 245
           + DAR +FD+      V W ++ISGY+++++ +EAL LF KMR    L  D   L+  L 
Sbjct: 65  LKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLK 124

Query: 246 ACS-SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            C   L +L +G  +HG + K G+++ V V SALLD Y K G    +CK+F E       
Sbjct: 125 TCGLGLNYL-YGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDE------- 176

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                                   MP ++ ++W ++I GL + G     L  F  M +  
Sbjct: 177 ------------------------MPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSK 212

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---YD- 420
           +  D ++ A  + A A+  +L  G  +  +    G D +  ++ SL   Y KCG   Y  
Sbjct: 213 VEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGL 272

Query: 421 -----------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                         L  F  MR + V P   TF+A++S C +  
Sbjct: 273 HTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFA 332

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            +K G++    +     ++  +   + ++ L+++ G L     +   M F  D+  WS+I
Sbjct: 333 RLKWGEQLHAHVLCVGFVNA-LSVANSIMTLYSKCGELASVSKVFCSMKFR-DIITWSTI 390

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPE 537
           +    A+   G G +  E +  +  E
Sbjct: 391 I---AAYSQVGYGEEAFEYLSRMRSE 413


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 191/607 (31%), Positives = 298/607 (49%), Gaps = 102/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+ C     +   KQ+H   +K   +     + N LL +Y+ CG   +A  +FD + ++
Sbjct: 34  VLKRCLKQKDLMAAKQVHDCIIKSR-MEQNAHVMNNLLHVYIECGRLQEARCVFDALVKK 92

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWNAMI G+++  H E +++LF  M     Q N  ++ +++   A A L+AL++GK+
Sbjct: 93  SGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILK--ACASLSALKWGKE 150

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H+ I   GL+ D  +G++L+ +YGK                               CG 
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGK-------------------------------CGS 179

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +N+ARR+FD   +   + W  MI  Y  +    EA  L  +M + G   +A T  S+L+A
Sbjct: 180 INEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNA 239

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+S G L+  K+VH HA   G+  DV V +AL+  Y+K                      
Sbjct: 240 CASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAK---------------------- 277

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                     G I+DA+ +F  M  + ++SWN MI   +++G   EA DLF  M     +
Sbjct: 278 ---------SGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCK 328

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D     S+++ACA+  +LE  +++       GL+ D  + T+LV  Y K G        
Sbjct: 329 PDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVV 388

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     DAL +F  M   GVKP  +TF A+LSAC H GLV
Sbjct: 389 FDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLV 448

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            EG+  + AM   Y I+P++ H +CMVDL  RAG L EA   I+ M  + D   W ++L 
Sbjct: 449 DEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLG 508

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  +G+  LG  VA+  ++LDP+NA  Y+ LS+I+A +G+W+  S +R +MRE+ + K 
Sbjct: 509 SCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKE 568

Query: 574 PGCSWAD 580
           PG SW +
Sbjct: 569 PGRSWIE 575



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 188/425 (44%), Gaps = 70/425 (16%)

Query: 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGYANCGKM 187
           L  GL  DS +   ++    K  D  +A QV    +    E +   ++ L+  Y  CG++
Sbjct: 20  LQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRL 79

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
            +AR VFD     S   WN+MI+GY+ +    +A+ LF +M   GV  +A T   +L AC
Sbjct: 80  QEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKAC 139

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           +SL  L+ GK+VH      G+  DV V +ALL  Y K G  ++A ++F  L  +D I   
Sbjct: 140 ASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDII--- 196

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                                       SW  MI   +Q+G+  EA  L   M +   + 
Sbjct: 197 ----------------------------SWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKP 228

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------- 417
           +  +  S+++ACA+  +L+  ++V       GL+ D  + T+LV  Y K           
Sbjct: 229 NAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVF 288

Query: 418 -----------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                  G++A  LF +M+  G KP  I F +IL+AC   G + 
Sbjct: 289 DRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGAL- 347

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           E  K          ++ ++   + +V +++++G +++A  + ++M    +V  W++++ G
Sbjct: 348 EWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISG 406

Query: 515 CVAHG 519
              HG
Sbjct: 407 LAQHG 411



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/432 (22%), Positives = 163/432 (37%), Gaps = 114/432 (26%)

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
           + N  +EA+++     + G++ D+     VL  C     L   KQVH    K  +  +  
Sbjct: 5   TANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAH 64

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
           V + LL  Y + G   +A  +F  L        N MI  Y      EDA  +FR M ++ 
Sbjct: 65  VMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHE- 123

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
                    G+  N                       +   ++ ACA++S+L+ G++V A
Sbjct: 124 ---------GVQPNAG---------------------TYMIILKACASLSALKWGKEVHA 153

Query: 394 RVTIIGLDSDQIISTSLVDFYCKC---------------------------------GYD 420
            +   GL+SD  + T+L+  Y KC                                 G +
Sbjct: 154 CIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKE 213

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVK-------------------------- 454
           A  L  +M   G KP  IT+ +IL+AC   G +K                          
Sbjct: 214 AYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQ 273

Query: 455 ---------EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA-- 503
                    + +  FD MK +     ++  ++ M+  FA  G  +EA +L  QM  E   
Sbjct: 274 MYAKSGSIDDARVVFDRMKVR-----DVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCK 328

Query: 504 -DVGMWSSILRGCVAHGD----KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
            D  M+ SIL  C + G     K + R   +  +E+D     A + +   ++ SG  + +
Sbjct: 329 PDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHM---YSKSGSIDDA 385

Query: 559 SLIRDIMREKHV 570
            ++ D M+ ++V
Sbjct: 386 RVVFDRMKVRNV 397


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 182/582 (31%), Positives = 296/582 (50%), Gaps = 47/582 (8%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-- 99
           A  L+      G   DA   FD +P  RR+    NAM+  F +      ++ +F+ +   
Sbjct: 95  ATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGS 154

Query: 100 ---QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
              + +D+S+  LIS   +    A  +  Q+H  +L +G      + ++L+ LY KC   
Sbjct: 155 GSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTP 214

Query: 157 NS---ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
            +   A +VL+ M + DD   + ++ GY   G +N AR VF+       V+WN+MISGY+
Sbjct: 215 EASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYV 274

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG---VID 270
            +    +A  LF +M    V  D  T  SVLSAC++ GF  HGK VHG   ++    V +
Sbjct: 275 QSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPE 334

Query: 271 DVI-VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
             + V +AL+  YSK G    A ++F  + + D +  NT+++ Y   G ++ A  +F+ M
Sbjct: 335 AALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVM 394

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           P K+ +SW  M+ G    G   +AL LF  M   D++   ++ A  I+AC  + +L+ G 
Sbjct: 395 PYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGR 454

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKC-------------------------------- 417
           Q+ A +   G ++      +L+  Y KC                                
Sbjct: 455 QLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHG 514

Query: 418 -GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
            G +AL LF++M   G+ P  I+F  IL+AC+H GLV EG  +F++MK  + I P  +HY
Sbjct: 515 HGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHY 574

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
           + ++DL  R+G + EA +LI+ MPFE    +W +IL GC  +GD   G   A+++  + P
Sbjct: 575 ARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIP 634

Query: 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           ++   YI LS+ ++ +G W  ++ +R +MR++ V K PGCSW
Sbjct: 635 QHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSW 676



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 205/472 (43%), Gaps = 74/472 (15%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT---DALLLFDEMPRRNCFSWNAMIEGF 82
           QLH   LK G   + L ++N L+ +YM+C  P    DA  + DEMP ++  +W  M+ G+
Sbjct: 184 QLHCSVLKSGAA-AVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 242

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA---------------------- 120
           ++ G    +  +F  +  K D  WN +ISG+ ++ + A                      
Sbjct: 243 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 302

Query: 121 -----------LEYGKQIHSHILVNGLDFDS----VLGSSLVNLYGKCGDFNSANQVLNM 165
                        +GK +H  I+    +F       + ++LV LY K G    A ++ + 
Sbjct: 303 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 362

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
           M   D    + ++SGY + G ++ A  VF      + + W  M+SGY+      +AL LF
Sbjct: 363 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLF 422

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           ++MR   V     T A  ++AC  LG L+HG+Q+H H  + G        +ALL  Y+K 
Sbjct: 423 NQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC 482

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           G  +D                               A+ +F  MPN   +SWN+MI  L 
Sbjct: 483 GAVND-------------------------------ARLVFLVMPNLDSVSWNAMISALG 511

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQ 404
           Q+G   EAL+LF  M    +  D+ S  ++++AC +   ++ G   F  +    G+   +
Sbjct: 512 QHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGE 571

Query: 405 IISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                L+D   + G    A  + ++    +PT   + AILS C   G ++ G
Sbjct: 572 DHYARLIDLLGRSGRIGEAR-DLIKTMPFEPTPSIWEAILSGCRTNGDMEFG 622



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 159/377 (42%), Gaps = 102/377 (27%)

Query: 11  LLQSC-NTHHSIHVGKQLHLHFLK---KGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L +C N    +H GK +H   ++     +  + LP+ N L+ +Y + G    A  +FD 
Sbjct: 304 VLSACANAGFFVH-GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 362

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF------------- 113
           M  ++  SWN ++ G++  G  +K++++F VMP KND SW +++SG+             
Sbjct: 363 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLF 422

Query: 114 --------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                               A  +L AL++G+Q+H+H++  G +  +  G++L+ +Y KC
Sbjct: 423 NQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC 482

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           G  N                               DAR VF    +  SV WN+MIS   
Sbjct: 483 GAVN-------------------------------DARLVFLVMPNLDSVSWNAMISALG 511

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDV 272
            +    EAL LF +M   G+  D  +  ++L+AC+  G ++ G           G+    
Sbjct: 512 QHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGI---- 567

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
              S   D Y++                        +I +    GRI +A+ + +TMP +
Sbjct: 568 ---SPGEDHYAR------------------------LIDLLGRSGRIGEARDLIKTMPFE 600

Query: 333 SLIS-WNSMIVGLSQNG 348
              S W +++ G   NG
Sbjct: 601 PTPSIWEAILSGCRTNG 617



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 12/191 (6%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY  A  + +C    ++  G+QLH H ++ G   S     N LL MY +CG   DA L+F
Sbjct: 434 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASN-SAGNALLTMYAKCGAVNDARLVF 492

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADL 118
             MP  +  SWNAMI    + GH  ++L+LF+ M      P +  F   +     A    
Sbjct: 493 LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVD 552

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSAL 177
               Y + +       G+       + L++L G+ G    A  ++  M  EP      A+
Sbjct: 553 EGFHYFESMKRDF---GISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAI 609

Query: 178 ISGYANCGKMN 188
           +SG    G M 
Sbjct: 610 LSGCRTNGDME 620


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/607 (29%), Positives = 301/607 (49%), Gaps = 102/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C++   ++ G+++H+  ++ G+ N T  + N L+ MY +CG+  DA  +FD M  R
Sbjct: 135 ILSACSSPAVLNWGREIHVRVMEAGLANDTT-VGNALISMYAKCGSVRDARRVFDAMASR 193

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  SW  +   + + G+ E+SL+ ++ M Q+    +  ++  ++S  A   LAALE GKQ
Sbjct: 194 DEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLS--ACGSLAALEKGKQ 251

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH+HI+ +    D  + ++L  +Y KC                               G 
Sbjct: 252 IHAHIVESEYHSDVRVSTALTKMYMKC-------------------------------GA 280

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
             DAR VF+  +    + WN+MI G++ + +  EA   FH+M   GV  D +T  +VLSA
Sbjct: 281 FKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSA 340

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+  G L  GK++H  A K G++ DV   +AL                            
Sbjct: 341 CARPGGLARGKEIHARAAKDGLVSDVRFGNAL---------------------------- 372

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
              I +YS  G ++DA+ +F  MP + ++SW +++   +     +E+   F  M +  ++
Sbjct: 373 ---INMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVK 429

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            +K +   V+ AC+N  +L+ G+++ A V   GL +D  ++ +L+  Y KCG        
Sbjct: 430 ANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRV 489

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL  +  M++ G++P   TF  +LSAC  C LV
Sbjct: 490 FEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLV 549

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG++ F  M   Y I P  +HY+CMVD+ ARAG L EA ++I  +P +    MW ++L 
Sbjct: 550 EEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLA 609

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  +G + AE  ++L+P+NA  Y+ LS+I+A +G W   + +R  M+E+ V K 
Sbjct: 610 ACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKE 669

Query: 574 PGCSWAD 580
           PG SW +
Sbjct: 670 PGRSWIE 676



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 202/448 (45%), Gaps = 101/448 (22%)

Query: 99  PQKNDFSWNMLISGFAKA-DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
           PQ + + +  L+    KA DLA    GKQ+H HIL                   +CG   
Sbjct: 24  PQVDSYDYVKLLQSCVKAKDLAV---GKQVHEHIL-------------------RCG--- 58

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
                     +P+ +  + L+  YA+CG +N+AR++FD+ ++ S V WN MISGY     
Sbjct: 59  ---------VKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGL 109

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
             EA  LF  M++  +  D  T  S+LSACSS   L  G+++H    + G+ +D  V +A
Sbjct: 110 AQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNA 169

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           L+  Y+K G   DA ++F                                 M ++  +SW
Sbjct: 170 LISMYAKCGSVRDARRVFD-------------------------------AMASRDEVSW 198

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
            ++    +++G   E+L  +  M +  +R  + +  +V+SAC ++++LE G+Q+ A +  
Sbjct: 199 TTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVE 258

Query: 398 IGLDSDQIISTSLVDFYCKCGY---------------------------------DALAL 424
               SD  +ST+L   Y KCG                                  +A   
Sbjct: 259 SEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGT 318

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F+ M   GV P   T+T +LSAC   G +  G++   A   +  +  ++   + ++++++
Sbjct: 319 FHRMLEEGVAPDRATYTTVLSACARPGGLARGKE-IHARAAKDGLVSDVRFGNALINMYS 377

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           +AG + +A  + ++MP + DV  W+++L
Sbjct: 378 KAGSMKDARQVFDRMP-KRDVVSWTTLL 404



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 153/362 (42%), Gaps = 70/362 (19%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           + R G   D+     +L +C     L  GKQVH H  + GV  +V + + LL  Y+  G 
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
            ++A +LF +      +  N MI+ Y+                            GL+Q 
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAH--------------------------RGLAQ- 111

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
               EA +LF  M +  L  DKF+  S++SAC++ + L  G ++  RV   GL +D  + 
Sbjct: 112 ----EAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVG 167

Query: 408 TSLVDFYCKCG--------YDALA-------------------------LFNEMRNTGVK 434
            +L+  Y KCG        +DA+A                          ++ M    V+
Sbjct: 168 NALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVR 227

Query: 435 PTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           P+ IT+  +LSAC     +++G++     ++ +YH D  +   + +  ++ + G   +A 
Sbjct: 228 PSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVS--TALTKMYMKCGAFKDAR 285

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFAT 551
            + E + +  DV  W++++RG V  G          RM+E  + P+ A     LS+    
Sbjct: 286 EVFECLSYR-DVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARP 344

Query: 552 SG 553
            G
Sbjct: 345 GG 346



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 58/95 (61%), Gaps = 2/95 (2%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           +I Y+  +L++C+   ++  GK++H   +K G+L + L + N L+ MY +CG+  DA+ +
Sbjct: 432 KITYMC-VLKACSNPVALKWGKEIHAEVVKAGLL-ADLAVTNALMSMYFKCGSVEDAIRV 489

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           F+ M  R+  +WN +I G  + G   ++LQ + VM
Sbjct: 490 FEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVM 524



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           D+   +++   ++D +    ++ +C     L +G+QV   +   G+  +  I+ +L+  Y
Sbjct: 14  DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73

Query: 415 CKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
             CG   +A  LF++  N     +++++  ++S   H GL +E    F  M+ Q  ++P+
Sbjct: 74  AHCGSVNEARQLFDKFSNK----SVVSWNVMISGYAHRGLAQEAFNLFTLMQ-QERLEPD 128


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 200/678 (29%), Positives = 314/678 (46%), Gaps = 138/678 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++++C     +  G QLH   ++ G  +  + +   L+  Y + GN  +A L+FD++
Sbjct: 132 LASVIRACTQLGVVEKGAQLHGFVVRSG-FDQDVYVGTSLIDFYSKNGNIEEARLVFDQL 190

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             +   +W  +I G+ K G    SL+LF  M + N      ++S    A   L  LE GK
Sbjct: 191 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 250

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+++L  G + D     S+VN+                           LI  Y  C 
Sbjct: 251 QIHAYVLRRGTEMDV----SVVNV---------------------------LIDFYTKCN 279

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++   R++FD+    + + W +MISGY+ N+ D EA+ LF +M R G   D     SVL+
Sbjct: 280 RVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT 339

Query: 246 ACSSLGFLEHGKQVHGHACKV----------GVID---------------------DVIV 274
           +C S   LE G+QVH +  K           G+ID                     +VI 
Sbjct: 340 SCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVIS 399

Query: 275 ASALLDTYSKRGMPSDACKLFSELKV---------------------------------- 300
            +A+++ YS +   S+A +LF E++V                                  
Sbjct: 400 YNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLII 459

Query: 301 -----YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                 D    + +I VYS C  ++DA+H+F  M  K ++ WN+M  G +Q+    EAL 
Sbjct: 460 KFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALK 519

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           L+  +     + ++F+ A++I+A +N++SL  G+Q   ++  +GLD    ++ +LVD Y 
Sbjct: 520 LYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYA 579

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +AL +F EM   G++P  +TF A
Sbjct: 580 KCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVA 639

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H G V++G   F++M   + I P  EHY+C+V L  R+G L EA   IE+MP E
Sbjct: 640 VLSACSHAGRVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIE 698

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W S+L  C   G+  LG+  AE  I  DP+++ +YI LS+IFA+ G W     +R
Sbjct: 699 PAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVR 758

Query: 563 DIMREKHVGKLPGCSWAD 580
           D M    V K PG SW +
Sbjct: 759 DRMDSSEVVKEPGRSWIE 776



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 146/549 (26%), Positives = 253/549 (46%), Gaps = 105/549 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LLQ   + + I   K +H   +  G+ + T  +AN L+ +  +     +A ++FD+M
Sbjct: 30  FANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTF-LANILINVCSKSDRVDNARVVFDKM 88

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALE 122
           P +N  +W++M+  + + G+ E++L +F  + +K     N+F    +I   A   L  +E
Sbjct: 89  PHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIR--ACTQLGVVE 146

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G Q+H  ++ +G D D  +G+SL++ Y K G+                           
Sbjct: 147 KGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGN--------------------------- 179

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
               + +AR VFD+ ++ ++V W ++I+GY        +L LF +MR   V+ D   ++S
Sbjct: 180 ----IEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSS 235

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VLSACS L FLE GKQ+H +  + G   DV V + L+D Y+K        KLF ++ V  
Sbjct: 236 VLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV-- 293

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                                        K++ISW +MI G  QN    EA+ LF  MN+
Sbjct: 294 -----------------------------KNIISWTTMISGYMQNSFDWEAMKLFGEMNR 324

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
           L  + D F+  SV+++C +  +LE G QV A      L+SD+ +   L+D Y K      
Sbjct: 325 LGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLID 384

Query: 418 ---------------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                GY       +AL LF+EMR     P+++TF ++L     
Sbjct: 385 AKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSAS 444

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
                E  K    +  ++ +  ++   S ++D++++   + +A ++ E+M  E D+ +W+
Sbjct: 445 L-FALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWN 502

Query: 510 SILRGCVAH 518
           ++  G   H
Sbjct: 503 AMFFGYTQH 511


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 187/607 (30%), Positives = 312/607 (51%), Gaps = 47/607 (7%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMY---MRCGNPTDALLLFDEMPRRNCFSWN 76
           S+   +Q H   L+  + + T  +   LL  Y   +    P  +L L   +P    FS++
Sbjct: 15  SLSQARQAHALILRLNLFSDT-QLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFS 73

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIHSHILVN 134
           ++I  F +  H    L  F+ +          L+    K  A L AL+ G+Q+H+    +
Sbjct: 74  SLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAAS 133

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           G   DS++ SSL ++Y KC     A ++ + M + D    SA+I+GY+  G + +A+ +F
Sbjct: 134 GFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELF 193

Query: 195 DRT----TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                   + + V WN M++G+ +N    EA+ +F  M   G   D ST++ VL A   L
Sbjct: 194 GEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCL 253

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             +  G QVHG+  K G+  D  V SA+LD Y K G   +  ++F E++  +   LN  +
Sbjct: 254 EDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFL 313

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           T  S  G ++ A  +F    ++ +    ++W S+I   SQNG  +EAL+LF +M    + 
Sbjct: 314 TGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVE 373

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--- 423
            +  ++ S+I AC NIS+L  G+++       G+  D  + ++L+D Y KCG   LA   
Sbjct: 374 PNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRC 433

Query: 424 ------------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                         +F+ M  +G KP ++TFT +LSAC   GL 
Sbjct: 434 FDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLT 493

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG + +++M  ++ I+P++EHY+C+V L +R G L EA ++I++MPFE D  +W ++L 
Sbjct: 494 EEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLS 553

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  LG   AE++  L+P N   YI LS+I+A+ G W++ + IR++M+ K + K 
Sbjct: 554 SCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKN 613

Query: 574 PGCSWAD 580
           PG SW +
Sbjct: 614 PGYSWIE 620



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/484 (27%), Positives = 230/484 (47%), Gaps = 79/484 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   ++SC +  ++  G+QLH      G L  ++ +A+ L  MY++C    DA  LFD M
Sbjct: 107 LPSAIKSCASLRALDPGQQLHAFAAASGFLTDSI-VASSLTHMYLKCDRILDARKLFDRM 165

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGF---------- 113
           P R+   W+AMI G+ +LG  E++ +LF  M     + N  SWN +++GF          
Sbjct: 166 PDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAV 225

Query: 114 -----------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
                                  A   L  +  G Q+H +++  GL  D  + S+++++Y
Sbjct: 226 GMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMY 285

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT----SSVMWN 206
           GKCG     ++V + ++E +   L+A ++G +  G ++ A  VF++  D     + V W 
Sbjct: 286 GKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWT 345

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           S+I+    N +D EAL LF  M+  GV  +A T+ S++ AC ++  L HGK++H  + + 
Sbjct: 346 SIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRR 405

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G+ DDV V SAL+D Y+K                               CGRI+ A+  F
Sbjct: 406 GIFDDVYVGSALIDMYAK-------------------------------CGRIQLARRCF 434

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             M   +L+SWN+++ G + +G   E +++F  M +   + D  +   V+SACA     E
Sbjct: 435 DKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTE 494

Query: 387 LGEQVFARVTII-GLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAI 443
            G + +  ++   G++        LV    + G   +A ++  EM     +P    + A+
Sbjct: 495 EGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMP---FEPDACVWGAL 551

Query: 444 LSAC 447
           LS+C
Sbjct: 552 LSSC 555


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/557 (32%), Positives = 288/557 (51%), Gaps = 68/557 (12%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAK 115
           A+ +F+ +   N   WN M+ G         +L+++  M       N +S+  L+   AK
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           +   A E G+QIH+ +L  G   D  + +SL+++Y + G    A +V +     D    +
Sbjct: 77  SK--AFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCT 134

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           ALI+GYA+ G    AR+VFD  T+   V WN+MI+GY+ N    EAL LF +M R  V  
Sbjct: 135 ALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRP 194

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  TL SV+SAC+  G +E G+QVH               S + D     G  S      
Sbjct: 195 DEGTLVSVVSACAQSGSIELGRQVH---------------SWVDDDDDDHGFSSS----- 234

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
             LK+     +N +I +YS CG +E A  +F  +  K ++SWN++I G +      EAL 
Sbjct: 235 --LKI-----VNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALL 287

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDF 413
           LF  M +     +  +L SV+ ACA++ ++++G    V+    + G+ ++  + TSL+D 
Sbjct: 288 LFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDM 347

Query: 414 YCKCG-------------YDALA--------------------LFNEMRNTGVKPTIITF 440
           Y KCG             Y +L+                    LF+ MR   V+P  ITF
Sbjct: 348 YAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITF 407

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H GL+  G++ F +M   Y++ P++EHY CM+DL   +G   EA  +I  MP
Sbjct: 408 VGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMP 467

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E D  +W S+L+ C  HG+  L    A+++I+++PEN+ +Y+ LS+I+AT+G WE  + 
Sbjct: 468 MEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVAR 527

Query: 561 IRDIMREKHVGKLPGCS 577
           +R ++  K + K+PGCS
Sbjct: 528 VRGVLNGKGMKKVPGCS 544


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 200/678 (29%), Positives = 314/678 (46%), Gaps = 138/678 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++++C     +  G QLH   ++ G  +  + +   L+  Y + GB   A L+FD++
Sbjct: 40  LASVIRACTQLGVVEKGAQLHGFVVRSG-FDQDVYVGTSLIDFYSKNGBIEVARLVFDQL 98

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             +   +W  +I G+ K G    SL+LF  M + N      ++S    A   L  LE GK
Sbjct: 99  LEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 158

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+++L  G + D     S+VN+                           LI  Y  C 
Sbjct: 159 QIHAYVLRRGTEMDV----SVVNV---------------------------LIDFYTKCN 187

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++   R++FD+    + + W +MISGY+ N+ D EA+ LF +M R G   D     SVL+
Sbjct: 188 RVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT 247

Query: 246 ACSSLGFLEHGKQVHGHACKV----------GVID---------------------DVIV 274
           +C SL  LE G+QVH +  K           G+ID                     +VI 
Sbjct: 248 SCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVIS 307

Query: 275 ASALLDTYSKRGMPSDACKLFSELKV---------------------------------- 300
            +A+++ YS +   S+A +LF E++V                                  
Sbjct: 308 YNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLII 367

Query: 301 -----YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                 D    + +I VYS C  ++DA+H+F  M  K ++ WN+M  G +Q+    EAL 
Sbjct: 368 KXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALK 427

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           L+  +     + ++F+ A++I+A +N++SL  G+Q   ++  +GLD    ++ +LVD Y 
Sbjct: 428 LYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYA 487

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +AL +F EM   G++P  +TF A
Sbjct: 488 KCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVA 547

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H G V++G   F++M   + I P  EHY+C+V L  R+G L EA   IE+MP E
Sbjct: 548 VLSACSHAGXVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIE 606

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W S+L  C   G+  LG+  AE  I  DP+++ +YI LS+IFA+ G W     +R
Sbjct: 607 PAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVR 666

Query: 563 DIMREKHVGKLPGCSWAD 580
           D M    V K PG SW +
Sbjct: 667 DRMDSSEVVKEPGRSWIE 684



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 208/471 (44%), Gaps = 104/471 (22%)

Query: 86  GHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
           G+ E++L +F  + +K     N+F    +I   A   L  +E G Q+H  ++ +G D D 
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIR--ACTQLGVVEKGAQLHGFVVRSGFDQDV 72

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            +G+SL++ Y K GB   A  V + + E      + +I+GY  CG+              
Sbjct: 73  YVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGR-------------- 118

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
                 S +S           L LF +MR   V+ D   ++SVLSACS L FLE GKQ+H
Sbjct: 119 ------SXVS-----------LELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIH 161

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
            +  + G   DV V + L+D Y+K        KLF ++ V                    
Sbjct: 162 AYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV-------------------- 201

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
                      K++ISW +MI G  QN    EA+ LF  MN+L  + D F+  SV+++C 
Sbjct: 202 -----------KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG 250

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------------- 417
           ++ +LE G QV A      L+S++ +   L+D Y K                        
Sbjct: 251 SLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNA 310

Query: 418 ---GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
              GY       +AL LF+EMR     P+++TF ++L          E  K    +  + 
Sbjct: 311 MIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASL-FALELSKQIHGLIIKX 369

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
            +  ++   S ++D++++   + +A ++ E+M  E D+ +W+++  G   H
Sbjct: 370 GVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQH 419


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 199/610 (32%), Positives = 289/610 (47%), Gaps = 101/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++Q+      +  GKQLH   +  G    T  + N L+ MY +CG    AL LFD M
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTF-LTNHLVNMYSKCGELDHALKLFDTM 66

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
           P+RN  SW AMI G  +     ++++ F  M         F+++  I   A A L ++E 
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIR--ACASLGSIEM 124

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H   L  G+  +  +GS+L ++Y KC                              
Sbjct: 125 GKQMHCLALKFGIGSELFVGSNLEDMYSKC------------------------------ 154

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G M DA +VF+       V W +MI GY    E  EALL F KM    V  D   L S 
Sbjct: 155 -GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCST 213

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L AC +L   + G+ VH    K+G   D+ V +AL D YSK G    A  +F        
Sbjct: 214 LGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG------- 266

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                   + S C               ++++S+  +I G  +     + L +F  + + 
Sbjct: 267 --------IDSEC---------------RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 303

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            +  ++F+ +S+I ACAN ++LE G Q+ A+V  I  D D  +S+ LVD Y KCG     
Sbjct: 304 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQA 363

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        DA+ +F  M + GVKP  ITF ++L+ C H 
Sbjct: 364 IQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 423

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG  +F +M   Y + P  EHYSC++DL  RAG L EA   I +MPFE +   W S
Sbjct: 424 GLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCS 483

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
            L  C  HGDK +G+  AE++++L+P+N+ A + LS+I+A   +WE    +R  MR+ +V
Sbjct: 484 FLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNV 543

Query: 571 GKLPGCSWAD 580
            KLPG SW D
Sbjct: 544 KKLPGYSWVD 553



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 45/251 (17%)

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +L D + LA V+   +    L  GKQ+H      G      + + L++ YSK        
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSK-------- 52

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
                                  CG ++ A  +F TMP ++L+SW +MI GLSQN    E
Sbjct: 53  -----------------------CGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSE 89

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           A+  FC M        +F+ +S I ACA++ S+E+G+Q+       G+ S+  + ++L D
Sbjct: 90  AIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLED 149

Query: 413 FYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
            Y KCG  +DA  +F EM         +++TA++      G  +E    F  M     ID
Sbjct: 150 MYSKCGAMFDACKVFEEMPCKDE----VSWTAMIDGYSKIGEFEEALLAFKKM-----ID 200

Query: 471 PEI---EHYSC 478
            E+   +H  C
Sbjct: 201 EEVTIDQHVLC 211


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 189/628 (30%), Positives = 309/628 (49%), Gaps = 124/628 (19%)

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK-ADLAALEYGKQIHSHILV 133
           +N  I  F +LG+  ++++L N  P K D       S     ADL +++ G++IHS I  
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSP-KPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQS 129

Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG-------- 185
           N ++ D VLGS LV +Y  CGD     ++ + +     F  + L++GYA  G        
Sbjct: 130 NDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSL 189

Query: 186 ----------KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
                     ++  AR++FD   D   + WNSMISGY+SN    + L LF +M   G+  
Sbjct: 190 FKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINT 249

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT-------------- 281
           D +T+ SV++ CS+ G L  G+ +HG+A K     ++ + + LLD               
Sbjct: 250 DLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVF 309

Query: 282 -----------------YSKRGMPSDACKLFSELKVY----------------------- 301
                            Y++ G+   + +LF E++                         
Sbjct: 310 ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLE 369

Query: 302 ----------------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                           D  + N ++ +Y+ CG + DA  +F  M  K ++SWN+MI G S
Sbjct: 370 NGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYS 429

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           +N  P EAL+LF  M + + + +  ++A ++ ACA++++LE G+++   +   G   D+ 
Sbjct: 430 KNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRH 488

Query: 406 ISTSLVDFYCKCGY---------------------------------DALALFNEMRNTG 432
           ++ +LVD Y KCG                                  +A+A FNEMRN+G
Sbjct: 489 VANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSG 548

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           ++P  ++F +IL AC H GL+ EG  +F+ M+    I+P+ EHY+C+VDL ARAG L++A
Sbjct: 549 IEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKA 608

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
              I+ MP E D  +W ++L GC  + D  L  KVAE + EL+PEN   Y+ L++I+A +
Sbjct: 609 YKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEA 668

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +WE+   +R+ +  + + K PGCSW +
Sbjct: 669 EKWEEVKKLRERIGRRGLRKNPGCSWIE 696


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 196/680 (28%), Positives = 335/680 (49%), Gaps = 98/680 (14%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +G+Q+H   LK G + + + + N L+ MY +CG+  +A  + + M +++C SWN++I 
Sbjct: 150 LELGRQVHGMVLKHGFV-TNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIIT 208

Query: 81  GFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK--ADLAALE------------ 122
             +  G   ++L L   M     + N  +W+ +I GF+    D+ ++E            
Sbjct: 209 ACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAP 268

Query: 123 -------------------YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
                               GK++H +I+ + L  +  + ++LV +Y +CGD  SA ++ 
Sbjct: 269 DARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIF 328

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDT 219
           +          + +I GY   G +  A+ +F        +   + WN MISG++ N    
Sbjct: 329 SKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFD 388

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           +AL+LF  +   G+  D+ TL S+L+  + +  +  GK++H  A   G+  +  V  AL+
Sbjct: 389 DALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALV 448

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLI 335
           + Y K      A   F E+   DT   N +I+ Y+ C +I   + +   M +     ++ 
Sbjct: 449 EMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVY 508

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           +WNS++ GL +N     A+ LF  M    LR D +++  +++AC+ ++++  G+QV A  
Sbjct: 509 TWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYS 568

Query: 396 TIIGLDSDQIISTSLVDFYCKC---------------------------------GYDAL 422
              G DSD  I  +LVD Y KC                                 G + +
Sbjct: 569 IRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGI 628

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            +F  M ++ V+P  +TF ++LS+C H G +K G + F  M+  Y+I P ++HY+CMVDL
Sbjct: 629 VIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECFYLME-TYNITPTLKHYTCMVDL 687

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542
            +RAG L+EA  LI+ MP EAD   WS++L GC  H +  LG   AE++IEL+P N   Y
Sbjct: 688 LSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNTGNY 747

Query: 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW---ADGIAFNCWFLDT-------- 591
           + L++++A++G W   +  R++M +K + K PGCSW    DG+     FL +        
Sbjct: 748 VLLANLYASAGRWHDLAKTRELMNDKGMQKSPGCSWIEDRDGVHI---FLASDKSHQRVE 804

Query: 592 ----MFLQLANFDEIKQHQS 607
               M   L  F  IK+H+S
Sbjct: 805 EIYFMLDNLTKFIRIKEHKS 824



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 155/539 (28%), Positives = 262/539 (48%), Gaps = 59/539 (10%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           + +LQS N   S+ +GKQLH H +K G  N    +  +LLQMY    +  DA  +FD+M 
Sbjct: 38  STILQSSN---SLTLGKQLHSHSIKTGFYNHNF-VQTKLLQMYSINSSFEDAWHMFDKMT 93

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMPQKNDFSWNMLISGFAKADLAALEY 123
            +N  SW A++   + +G   K   LF     + + +K DF    ++       L  LE 
Sbjct: 94  LKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNIC-CGLGDLEL 152

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+H  +L +G   +  +G++L+++YGKCG  + A +VL  M + D    +++I+    
Sbjct: 153 GRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVA 212

Query: 184 CGKMNDARRVFDR----TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            G + +A  + +       + + V W+++I G+ SN  D E++ LF +M   GV  DA T
Sbjct: 213 NGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDART 272

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           LASVL ACS + +L  GK++HG+  +  +  +  VA+AL+  Y + G    A K+FS+  
Sbjct: 273 LASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFA 332

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALD 355
                  NTMI  Y   G +  AK +F  M  + +    ISWN MI G   N    +AL 
Sbjct: 333 RKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALM 392

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF ++    +  D F+L S+++  A+++ +  G+++ +   + GL S+  +  +LV+ YC
Sbjct: 393 LFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYC 452

Query: 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
           KC  D +A                                 Q  FD +      + +   
Sbjct: 453 KCN-DIIA--------------------------------AQMAFDEIS-----ERDTST 474

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           ++ ++  +AR   + +   L+E+M    FE +V  W+SIL G V +    L  ++   M
Sbjct: 475 WNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEM 533



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 141/550 (25%), Positives = 253/550 (46%), Gaps = 83/550 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+    + VGK+LH + ++  + ++   +AN L+ MY RCG+   A  +F + 
Sbjct: 273 LASVLPACSRMKWLFVGKELHGYIVRHELFSNGF-VANALVGMYRRCGDMKSAFKIFSKF 331

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAK-------- 115
            R+   S+N MI G+++ G+  K+ +LF  M Q    ++  SWN +ISG           
Sbjct: 332 ARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDAL 391

Query: 116 -------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
                                    AD+  +  GK+IHS  +V GL  +S +G +LV +Y
Sbjct: 392 MLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMY 451

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSSVMWN 206
            KC D  +A    + + E D    +ALISGYA C ++   R + +R      + +   WN
Sbjct: 452 CKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWN 511

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           S+++G + N +   A+ LF++M+ + +  D  T+  +L+ACS L  +  GKQVH ++ + 
Sbjct: 512 SILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRA 571

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G   D  + + L+D                               +Y+ CG I+    ++
Sbjct: 572 GYDSDAHIGATLVD-------------------------------MYAKCGSIKHCYQVY 600

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             + N +L+  N+M+   + +G   E + +F  M    +R D  +  SV+S+C +  S++
Sbjct: 601 NKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIK 660

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSA 446
           +G + F  +    +       T +VD   + G    A +  ++N  ++   +T++A+L  
Sbjct: 661 IGYECFYLMETYNITPTLKHYTCMVDLLSRAGKLDEA-YQLIKNMPMEADSVTWSALLGG 719

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           C     V  G+    A +    ++P    +Y  + +L+A AG  ++     E M    D 
Sbjct: 720 CFIHKEVALGEI---AAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELM---NDK 773

Query: 506 GMWSSILRGC 515
           GM  S   GC
Sbjct: 774 GMQKS--PGC 781


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 190/612 (31%), Positives = 309/612 (50%), Gaps = 100/612 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC-GNPTDALLLFDE 66
            A   ++C+T   + VG  +    +K G L S + +   L+ M+++  G+   A  +F++
Sbjct: 171 FAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEK 230

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALE 122
           MP RN  +W  MI   M+ G+  +++ LF  M     + + F+ + +IS  A  +L  L 
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLL- 289

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+Q+HS  + +GL  D  +G  L+N+Y KC                            +
Sbjct: 290 -GQQLHSQAIRHGLTLDRCVGCCLINMYAKC----------------------------S 320

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN-EDTEALLLFHKMRRNGVLEDASTLA 241
             G M  AR++FD+  D +   W +MI+GY+     D EAL LF  M    V+ +  T +
Sbjct: 321 VDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFS 380

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           S L AC++L  L  G+QV  HA K+G                           FS +   
Sbjct: 381 STLKACANLAALRIGEQVFTHAVKLG---------------------------FSSVNC- 412

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
              + N++I++Y+  GRI+DA+  F  +  K+LIS+N++I   ++N +  EAL+LF  + 
Sbjct: 413 ---VANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE 469

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
              +    F+ AS++S  A+I ++  GEQ+ ARV   GL  +Q +  +L+  Y +CG   
Sbjct: 470 DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIE 529

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                           AL LF++M   GV+P  +T+ A+LSAC 
Sbjct: 530 SAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACS 589

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV EG K F +M  ++ + P +EHY+C+VD+  R+G L+EA+  I  MP++AD  +W
Sbjct: 590 HVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVW 649

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            + L  C  HG+  LG+  A+ +IE +P +  AYI LS+++A+  +W++ S IR  M+EK
Sbjct: 650 RTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEK 709

Query: 569 HVGKLPGCSWAD 580
            + K  GCSW +
Sbjct: 710 XLIKEAGCSWVE 721



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 143/587 (24%), Positives = 251/587 (42%), Gaps = 93/587 (15%)

Query: 9   ARLLQSCNT-HHSIHVGKQLHLH----FLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            RL ++ +T  H +H G    L     FLKK I   +  I   + +   +     D++ L
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-SWNMLISGFAKADL---A 119
                       N++I  + K G  EK+  +F +M    D  SW+ ++S FA  ++   A
Sbjct: 105 ------------NSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRA 152

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-ALI 178
            L +   I +    N   F +   +     +   GD +    V+       D C+   LI
Sbjct: 153 LLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGD-SIFGFVIKTGYLQSDVCVGCGLI 211

Query: 179 SGYANC-GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
             +    G +  A +VF++  + ++V W  MI+  +      EA+ LF  M  +G   D 
Sbjct: 212 DMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDR 271

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            TL+ V+SAC+++  L  G+Q+H  A + G+  D  V   L++ Y+K  +    C   + 
Sbjct: 272 FTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMC---AA 328

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS-PIEALDL 356
            K++D IL                         + ++ SW +MI G  Q G    EALDL
Sbjct: 329 RKIFDQIL-------------------------DHNVFSWTAMITGYVQKGGYDEEALDL 363

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    +  + F+ +S + ACAN+++L +GEQVF     +G  S   ++ SL+  Y +
Sbjct: 364 FRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYAR 423

Query: 417 CGY---------------------------------DALALFNEMRNTGVKPTIITFTAI 443
            G                                  +AL LFNE+ + G+  +  TF ++
Sbjct: 424 SGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASL 483

Query: 444 LSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           LS     G + +G++     +K    ++  +   + ++ +++R G +  A  + E M  +
Sbjct: 484 LSGAASIGTIGKGEQIHARVIKSGLKLNQSV--CNALISMYSRCGNIESAFQVFEDME-D 540

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSS 547
            +V  W+SI+ G   HG      ++  +M+E  + P N   YI + S
Sbjct: 541 RNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP-NEVTYIAVLS 586


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 200/677 (29%), Positives = 323/677 (47%), Gaps = 144/677 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C T  S+   +++H   +  G L+  L    +L+ +Y   G+   A L+FD +   
Sbjct: 45  LLGICKTVSSL---RKIHALLVVHG-LSEDLLCETKLVSLYGSFGHVECARLMFDRIRNP 100

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKA--DLAALEYGKQ 126
           + +SW  MI  +       + +Q +N   +K  N++  N++ S   KA  +L   + G++
Sbjct: 101 DLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYD-NVVFSIVLKACSELRETDEGRK 159

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  I+  G                                 PD F L+ L+  YA C +
Sbjct: 160 LHCQIVKVG--------------------------------SPDSFVLTGLVDMYAKCRE 187

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + D+RRVFD   D + V W SMI GY+ N+   E L+LF++MR   V  +  TL S+++A
Sbjct: 188 VEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTA 247

Query: 247 CSSLGFLEHGKQVHGHACKVG--------------------------VID-----DVIVA 275
           C+ LG L  GK VHG+  K G                          V D     D++  
Sbjct: 248 CTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSW 307

Query: 276 SALLDTYSKRGMPSDACKLFSE-------------------------------------- 297
           +A++  Y++RG P +A KLF++                                      
Sbjct: 308 TAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIK 367

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           L   D    N ++ +Y+ C  I DA+++F T+ +K +I+WNS+I G +QNG   EAL+LF
Sbjct: 368 LGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELF 427

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCK 416
             M    +  D  +L SV+SACA++ +  +G  +       GL S  + + T+L++FY K
Sbjct: 428 DQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAK 487

Query: 417 CG--------YD-------------------------ALALFNEMRNTGVKPTIITFTAI 443
           CG        +D                         +L LF +M    ++P  + FT I
Sbjct: 488 CGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTI 547

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC H G++ EG ++F+ M   Y+  P ++HY+CMVDL ARAG L EA++ IE++P + 
Sbjct: 548 LSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQP 607

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           DV +  + L GC  H    LG     RM+EL P+ AC Y+ +S+++A+ G W +++ + +
Sbjct: 608 DVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVME 667

Query: 564 IMREKHVGKLPGCSWAD 580
           +M+++ + KLPG S  D
Sbjct: 668 LMKQRGLAKLPGWSLVD 684



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 216/498 (43%), Gaps = 75/498 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  L+ +C    ++H GK +H + +K G  LNS L     LL +Y +CG+  DA  +FDE
Sbjct: 241 LGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFL--VTPLLDLYFKCGDIRDAFSVFDE 298

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYG 124
           +   +  SW AMI G+ + G+  ++L+LF     K+     +  S    A A   +L  G
Sbjct: 299 LSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMG 358

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           + +H   +  G + D+   ++LV++Y KC     A  V   + + D    +++ISGY   
Sbjct: 359 RSVHCLGIKLGSE-DATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQ- 416

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                                         N    EAL LF +MR + V  DA TL SVL
Sbjct: 417 ------------------------------NGYAYEALELFDQMRSDSVYPDAITLVSVL 446

Query: 245 SACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           SAC+S+G    G  +HG+A K G++   V V +ALL+ Y+K G    A  +F E      
Sbjct: 447 SACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDE------ 500

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                                    M  K+ I+W++MI G    G    +L+LF +M K 
Sbjct: 501 -------------------------MGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKE 535

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGYDAL 422
            L  ++    +++SAC++   L  G + F  +  +            +VD   + G    
Sbjct: 536 KLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEE 595

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVD 481
           AL + +    ++P +    A L  C        G+    A++    + P+   +Y  M +
Sbjct: 596 AL-DFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEV---AVRRMLELHPDKACYYVLMSN 651

Query: 482 LFARAGCLNEAVNLIEQM 499
           L+A  G  ++A  ++E M
Sbjct: 652 LYASEGRWSQANQVMELM 669



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 180/418 (43%), Gaps = 73/418 (17%)

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFD 195
           S+  +   +L G C   +S  ++  ++       D  C + L+S Y + G +  AR +FD
Sbjct: 36  SISSNPCFSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFD 95

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLE 254
           R  +     W  MI  Y  N+  +E +  ++   R  + E D    + VL ACS L   +
Sbjct: 96  RIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETD 155

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G+++H    KVG  D  ++ + L+D Y+K                              
Sbjct: 156 EGRKLHCQIVKVGSPDSFVL-TGLVDMYAK------------------------------ 184

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            C  +ED++ +F  + +++++ W SMIVG  QN    E L LF  M +  +  ++++L S
Sbjct: 185 -CREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGS 243

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------- 418
           +++AC  + +L  G+ V   V   G D +  + T L+D Y KCG                
Sbjct: 244 LVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTID 303

Query: 419 -----------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                             +AL LF + R   + P  +T +++LSAC   G +  G+    
Sbjct: 304 LVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHC 363

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
                   D   E+   +VD++A+   + +A  + E + F+ DV  W+SI+ G   +G
Sbjct: 364 LGIKLGSEDATFEN--ALVDMYAKCHMIGDARYVFETV-FDKDVIAWNSIISGYTQNG 418


>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
 gi|223947871|gb|ACN28019.1| unknown [Zea mays]
 gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
          Length = 651

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 199/645 (30%), Positives = 317/645 (49%), Gaps = 86/645 (13%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILN-----------STLPIANRLLQMYMRCGNP 57
           A+L + C+  H +    Q+H  FL  G+L            +T   A RLL   +     
Sbjct: 9   AQLSRCCSARHLL----QIHAQFLASGLLADAYAASRLLLFTTSATAARLLPHPLH---- 60

Query: 58  TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD 117
             +L LF  +   N F+ N +++  ++ G       L+  MP   D   + L++  A A 
Sbjct: 61  -HSLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASMPAAPDTYTHPLLAA-ACAA 118

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
              +  G Q+HSH + +G   +  L ++L+++Y  CG   SA +V +     D    + +
Sbjct: 119 RGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTI 178

Query: 178 ISGY-------------------------------ANCGKMNDARRVFDRTTDTSSVMWN 206
           ++ Y                               A  G + +AR VFD      +  W 
Sbjct: 179 LATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWT 238

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           +M+S +  N+   EAL +F  MR  G   D + + SV++AC+  G +++G+  HG   + 
Sbjct: 239 AMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRA 298

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G+   V V + L+  YS       A +LF   +  D    N+MI+ Y   GR+EDAK +F
Sbjct: 299 GLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALF 358

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             MP+K  +SW++MI G   N    EAL++F +M   +++ D  +L SVISAC+N+S+LE
Sbjct: 359 DVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALE 418

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD------------------ 420
            G+ V   +     +   ++ TSL+D Y KCG        +D                  
Sbjct: 419 QGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLA 478

Query: 421 -------ALALFNEMRNTGVK-PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                  +L +F+EM  TG   P  ITFT +LSAC H GLV+EG+++F  M+ +Y I P 
Sbjct: 479 MNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPN 538

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           I HY CMVDL  RAG + EA ++I+ MP   DV  W ++L  C  HGD  +G +V ++++
Sbjct: 539 IRHYGCMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGERVGKKLV 598

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +LDP++      LS+I+A+ G W+    +R  M+++HV K+ GCS
Sbjct: 599 KLDPDHDGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCS 643



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 125/285 (43%), Gaps = 66/285 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C     I  G+  H   ++ G L S + + N L+ MY  C +   A  LFD  
Sbjct: 272 MVSVVAACAKSGVIQNGEVCHGLVVRAG-LGSRVNVQNVLIHMYSSCQDVVAARRLFDNG 330

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
              + FSWN+MI G++K G  E +  LF+VMP K++ SW+ +I+G               
Sbjct: 331 ESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFD 390

Query: 113 ------------------FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                              A ++L+ALE GK +H +I     +   VLG+SL+++Y KCG
Sbjct: 391 SMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCG 450

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
              +A +V +M++E    C                               WN++I G   
Sbjct: 451 CMEAALEVFDMLEEKGTPC-------------------------------WNAVIVGLAM 479

Query: 215 NNEDTEALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQ 258
           N   T +L +F +M   G  + +  T   VLSAC   G +E G+Q
Sbjct: 480 NGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQ 524


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  308 bits (788), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 198/611 (32%), Positives = 288/611 (47%), Gaps = 103/611 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++Q+      +  GKQLH   +  G    T  + N L+ MY +CG    AL LFD M
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTF-LTNHLVNMYSKCGELDHALKLFDTM 66

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
           P+RN  SW AMI G  +     ++++ F  M         F+++  I   A A L ++E 
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIR--ACASLGSIEM 124

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H   L  G+  +  +GS+L ++Y KC                              
Sbjct: 125 GKQMHCLALKFGIGSELFVGSNLEDMYSKC------------------------------ 154

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G M DA +VF+       V W +MI GY    E  EALL F KM    V  D   L S 
Sbjct: 155 -GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCST 213

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L AC +L   + G+ VH    K+G   D+ V +AL D YSK                   
Sbjct: 214 LGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSK------------------- 254

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        G +E A ++F      ++++S+  +I G  +     + L +F  + +
Sbjct: 255 ------------AGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR 302

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
             +  ++F+ +S+I ACAN ++LE G Q+ A+V  I  D D  +S+ LVD Y KCG    
Sbjct: 303 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEH 362

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         DA+  F  M + GVKP  ITF ++L+ C H
Sbjct: 363 AIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSH 422

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV+EG  +F +M   Y + P  EHYSC++DL  RAG L EA   I +MPFE +   W 
Sbjct: 423 AGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWC 482

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           S L  C  HGDK +G+  AE++++L+P+N+ A + LS+I+A   +WE    +R  MR+ +
Sbjct: 483 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 542

Query: 570 VGKLPGCSWAD 580
           V KLPG SW D
Sbjct: 543 VKKLPGYSWVD 553



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 45/251 (17%)

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +L D + LA V+   +    L  GKQ+H      G      + + L++ YSK        
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSK-------- 52

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
                                  CG ++ A  +F TMP ++L+SW +MI GLSQN    E
Sbjct: 53  -----------------------CGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSE 89

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           A+  FC M        +F+ +S I ACA++ S+E+G+Q+       G+ S+  + ++L D
Sbjct: 90  AIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLED 149

Query: 413 FYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
            Y KCG  +DA  +F EM         +++TA++      G  +E    F  M     ID
Sbjct: 150 MYSKCGAMFDACKVFEEMPCKDE----VSWTAMIDGYSKIGEFEEALLAFKKM-----ID 200

Query: 471 PEI---EHYSC 478
            E+   +H  C
Sbjct: 201 EEVTIDQHVLC 211


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  308 bits (788), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 189/606 (31%), Positives = 298/606 (49%), Gaps = 100/606 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C     + VGK++H   +K G  +  L     L  MY +C    +A  +FD MP R
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSG-FSLDLFAMTGLENMYAKCRQVHEARKVFDRMPER 199

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYGKQIH 128
           +  SWN ++ G+ + G    +L++ N+M ++N   S+  ++S   A + L  +  GK+IH
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIH 259

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            + +  G D       SLVN+                         +AL+  YA CG + 
Sbjct: 260 GYAMRAGFD-------SLVNI------------------------ATALVDMYAKCGSLK 288

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR +FD   + + V WNSMI  Y+ N    EA+++F KM   GV     ++   L AC+
Sbjct: 289 TARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI-LLN 307
            LG LE G+ +H                                KL  EL++   + ++N
Sbjct: 349 DLGDLERGRFIH--------------------------------KLSVELELDRNVSVVN 376

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           ++I++Y  C  ++ A  +F  + +++++SWN+MI+G +QNG PIEAL+ F  M    ++ 
Sbjct: 377 SLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKP 436

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------Y 419
           D F+  SVI+A A +S     + +   V    LD +  ++T+LVD Y KCG        +
Sbjct: 437 DTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIF 496

Query: 420 D-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
           D                         AL LF EM+   ++P  +TF +++SAC H GLV+
Sbjct: 497 DMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVE 556

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            G K F  MK  Y I+P ++HY  MVDL  RAG LNEA + I QMP +  V ++ ++L  
Sbjct: 557 AGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGA 616

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H +     KVAER+ EL+PE+   ++ L++I+  +  WEK   +R  M  + + K P
Sbjct: 617 CQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTP 676

Query: 575 GCSWAD 580
           GCS  +
Sbjct: 677 GCSMVE 682



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 162/378 (42%), Gaps = 66/378 (17%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + L+S +   G +++A RVF+      +V++ +M+ G+   ++  +AL  F +MR + V 
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVE 132

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
                   +L  C     L  GK++HG   K G   D+   + L + Y+K     +A K+
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKV 192

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F  +   D                               L+SWN+++ G SQNG    AL
Sbjct: 193 FDRMPERD-------------------------------LVSWNTIVAGYSQNGMARMAL 221

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           ++   M + +L+    ++ SV+ A + +  + +G+++       G DS   I+T+LVD Y
Sbjct: 222 EMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMY 281

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            KCG                                  +A+ +F +M + GVKPT ++  
Sbjct: 282 AKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVM 341

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
             L AC   G ++ G ++   +  +  +D  +   + ++ ++ +   ++ A ++  ++  
Sbjct: 342 GALHACADLGDLERG-RFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400

Query: 502 EADVGMWSSILRGCVAHG 519
              V  W++++ G   +G
Sbjct: 401 RTIVS-WNAMILGFAQNG 417


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 203/610 (33%), Positives = 305/610 (50%), Gaps = 75/610 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C     +  GK LH  ++K  I  ST   +N  + +Y +CG    A   F ++   
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTY-FSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N FS+NA+I  + K      + QLF+ +P+ +  S+N LIS +A     A   G  + S 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALG--LFSG 130

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP--DDFCL--SALISGYANCGK 186
           +   GLD D    S+++     C D     Q+ ++      D +    +AL++ Y   G 
Sbjct: 131 MREMGLDMDXFTLSAVIT--ACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 187 MNDARRVFDRTTDT-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++DA+RVF         V WNSMI  Y  + E ++AL LF +M R G+  D  TLASVL+
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A + L  L  G Q HG   K G   +  V S L+D YSK G                   
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG------------------- 289

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE-ALDLFCNMNKLD 364
                      G + D + +F  +    L+ WN+M+ G SQN   +E AL+ F  M  + 
Sbjct: 290 -----------GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIG 338

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG----- 418
            R +  S   VISAC+N+SS   G+Q+ +      + S++I +  +L+  Y KCG     
Sbjct: 339 YRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDA 398

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        ++L LF  M    + PT ITF ++LSAC H 
Sbjct: 399 RRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHT 458

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G V+EG  +F+ MK +++I+PE EHYSCM+DL  RAG L+EA NLI +MPF      W+S
Sbjct: 459 GRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWAS 518

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  HG+  L  K A ++++L+P NA  Y+ LS+++A++G WE+ + +R  MR++ V
Sbjct: 519 LLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGV 578

Query: 571 GKLPGCSWAD 580
            K PGCSW +
Sbjct: 579 KKKPGCSWIE 588


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 203/610 (33%), Positives = 305/610 (50%), Gaps = 75/610 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C     +  GK LH  ++K  I  ST   +N  + +Y +CG    A   F ++   
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTY-FSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N FS+NA+I  + K      + QLF+ +P+ +  S+N LIS +A     A   G  + S 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALG--LFSG 130

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP--DDFCL--SALISGYANCGK 186
           +   GLD D    S+++     C D     Q+ ++      D +    +AL++ Y   G 
Sbjct: 131 MREMGLDMDGFTLSAVIT--ACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 187 MNDARRVFDRTTDT-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++DA+RVF         V WNSMI  Y  + E ++AL LF +M R G+  D  TLASVL+
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A + L  L  G Q HG   K G   +  V S L+D YSK G                   
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG------------------- 289

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE-ALDLFCNMNKLD 364
                      G + D + +F  +    L+ WN+M+ G SQN   +E AL+ F  M  + 
Sbjct: 290 -----------GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIG 338

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG----- 418
            R +  S   VISAC+N+SS   G+Q+ +      + S++I +  +L+  Y KCG     
Sbjct: 339 YRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDA 398

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        ++L LF  M    + PT ITF ++LSAC H 
Sbjct: 399 RRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHT 458

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G V+EG  +F+ MK +++I+PE EHYSCM+DL  RAG L+EA NLI +MPF      W+S
Sbjct: 459 GRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWAS 518

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  HG+  L  K A ++++L+P NA  Y+ LS+++A++G WE+ + +R  MR++ V
Sbjct: 519 LLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGV 578

Query: 571 GKLPGCSWAD 580
            K PGCSW +
Sbjct: 579 KKKPGCSWIE 588


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 180/608 (29%), Positives = 309/608 (50%), Gaps = 46/608 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +++LL+ C    S+     +H H L  G + S+    N+LL++Y + G  + A  LFDE 
Sbjct: 6   ISKLLKQC---RSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDET 62

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
           P  N F W A+I GF +    E +   F  M ++N    N  I+   KA   L  ++ G 
Sbjct: 63  PEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGD 122

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            ++   +  G +FD V+ + ++ L+ +CG+  SA Q+ + M+E D    +++I+GY N G
Sbjct: 123 LVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNG 182

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           +++ AR++FDR  + + + W SMI GY+   +  EA +LF +M      +D ++   ++S
Sbjct: 183 RVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPE----KDLASWKVMVS 238

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A  S+G L   + +     ++  I DV   + ++    K G    A + F  ++  +   
Sbjct: 239 AYMSVGNLVAARNLF----ELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVAS 294

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
              +I  Y   G ++ A+ +F  MP K+L++W++MI G ++ G P  +L L+    +  +
Sbjct: 295 WVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGI 354

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           + D+     +ISAC+ +   +  E V        L  +  + TSL+D Y KCG       
Sbjct: 355 KPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQ 414

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      DA++LF+EM+   +KP  + F  +L+AC+H GL
Sbjct: 415 VFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGL 474

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V EG++ F  M  +Y I P  +HY+CMVD+  RAGCL EA +LI  MP   +  +W ++L
Sbjct: 475 VGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALL 534

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H +  L    A  + +++P N+  Y+ L +I+A +G+W+  S +R ++RE  V K
Sbjct: 535 SACRVHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRK 594

Query: 573 LPGCSWAD 580
             G SW +
Sbjct: 595 NRGSSWIE 602


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 202/678 (29%), Positives = 331/678 (48%), Gaps = 139/678 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C       VGKQ+H   +K G +   + +   L+ MYM+  +  D   +FDEM
Sbjct: 95  LSCVLKVCGCLFDRIVGKQVHCQCIKCGFVED-VSVGTSLVDMYMKTESVEDGERVFDEM 153

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             +N  SW +++ G+ + G  E++L+LF+ M     + N F++  ++ G A AD  A+E 
Sbjct: 154 RVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLA-AD-GAVEK 211

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+H+ ++ +GLD    +G+S+VN+Y K                      S ++S    
Sbjct: 212 GVQVHTMVIKSGLDSTIFVGNSMVNMYSK----------------------SLMVS---- 245

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                DA+ VFD   + ++V WNSMI+G+++N  D EA  LF++MR  GV    +  A+V
Sbjct: 246 -----DAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATV 300

Query: 244 LSACSSLGFLEHGKQVHGHACKVGV-------------------IDD------------- 271
           +  C+++  +   KQ+H    K G                    IDD             
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELK---------VYDTILL-NTMITV--------- 312
           V+  +A++  Y + G    A  LF +++          Y TIL  N  ++          
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVK 420

Query: 313 ----------------YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                           YS  G   +A  IF  +  K +++W++M+ G +Q G    A+ +
Sbjct: 421 TNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKI 480

Query: 357 FCNMNKLDLRMDKFSLASVISACA-NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           F  + K  +  ++F+ +SV++ACA   +S+E G+Q  +     G  +   +S++LV  Y 
Sbjct: 481 FLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYA 540

Query: 416 K---------------------------------CGYDALALFNEMRNTGVKPTIITFTA 442
           K                                 CG  +L +F EMR+  ++   ITF  
Sbjct: 541 KRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIG 600

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           ++SAC H GLV EGQ++FD M   YHI P +EHYSCMVDL++RAG L +A++LI +MPF 
Sbjct: 601 VISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFP 660

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
           A   +W ++L  C  H +  LG   AE++I L P+++ AY+ LS+I+AT+G W++ + +R
Sbjct: 661 AGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVR 720

Query: 563 DIMREKHVGKLPGCSWAD 580
            +M  K V K  G SW +
Sbjct: 721 KLMDMKKVKKEAGYSWIE 738



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 207/494 (41%), Gaps = 104/494 (21%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122
           LFDE P++     N ++  F +    +++L LF  + +    +    +S   K      +
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFD 107

Query: 123 --YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              GKQ+H   +  G   D  +G+SLV++Y K                            
Sbjct: 108 RIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTES------------------------- 142

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
                 + D  RVFD     + V W S+++GY  N  + +AL LF +M+  G+  +  T 
Sbjct: 143 ------VEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTF 196

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A+VL   ++ G +E G QVH    K G+   + V +++++ YSK  M SDA         
Sbjct: 197 AAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA--------- 247

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                                 K +F +M N++ +SWNSMI G   NG  +EA +LF  M
Sbjct: 248 ----------------------KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
               +++ +   A+VI  CANI  +   +Q+  +V   G D D  I T+L+  Y KC   
Sbjct: 286 RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEI 345

Query: 418 ------------------------GY-------DALALFNEMRNTGVKPTIITFTAILSA 446
                                   GY        A+ LF +MR  GV+P   T++ IL+A
Sbjct: 346 DDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA 405

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
                 V   Q     +K  Y   P +   + + D +++ G  NEA  + E +  E D+ 
Sbjct: 406 ---NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAKIFELID-EKDIV 459

Query: 507 MWSSILRGCVAHGD 520
            WS++L G    GD
Sbjct: 460 AWSAMLSGYAQMGD 473



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 35/231 (15%)

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           ++ +F   P + L   N ++   S+N    EAL+LF  + +     D  SL+ V+  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK------------------------- 416
           +    +G+QV  +    G   D  + TSLVD Y K                         
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 417 -CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
             GY        AL LF++M+  G+KP   TF A+L      G V++G +    M  +  
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           +D  I   + MV++++++  +++A  + + M     V  W+S++ G V +G
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVS-WNSMIAGFVTNG 273


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 200/683 (29%), Positives = 329/683 (48%), Gaps = 143/683 (20%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            +LQ C    S+  GK++H   +  GI +    +  +L+ MY+ CG+      +FD++   
Sbjct: 375  VLQLCAEKKSLEDGKRVHSVIISNGI-SIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433

Query: 71   NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
              F WN ++  + K+G+  +S+ LF  M +     N +++  ++  FA   L  ++  K+
Sbjct: 434  KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAA--LGKVKECKR 491

Query: 127  IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
            +H ++L  G                    F S   V+N           +LI+ Y   G 
Sbjct: 492  VHGYVLKLG--------------------FGSNTAVVN-----------SLIAAYFKFGG 520

Query: 187  MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            +  A  +FD  ++   V WNSMI+G + N      L +F +M   GV  D +TL SVL A
Sbjct: 521  VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 580

Query: 247  CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK---------------------- 284
             +++G L  G+ +HG   K    ++V+ ++ LLD YSK                      
Sbjct: 581  WANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 640

Query: 285  ---------RGMPSDACKLFSELK-----------------------------VYDTILL 306
                      G+ SDA  LF E++                             V+  ++ 
Sbjct: 641  TSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 700

Query: 307  NTM----------ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            N M          I +Y+ CG +E+A+ +F  +P K ++SWN+MI G SQN  P EAL+L
Sbjct: 701  NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALEL 760

Query: 357  FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
            F +M K   + D  ++A V+ ACA +++L+ G ++   +   G  SD  ++ +LVD Y K
Sbjct: 761  FLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAK 819

Query: 417  CGY---------------------------------DALALFNEMRNTGVKPTIITFTAI 443
            CG                                  +A++ FNEMR  G++P   +F+ I
Sbjct: 820  CGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVI 879

Query: 444  LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
            L+AC H GL+ EG K+F++M+ +  ++P++EHY+C+VDL AR G L++A   IE MP + 
Sbjct: 880  LNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKP 939

Query: 504  DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
            D  +W  +L GC  H D  L  KVAE + EL+P+N   Y+ L++++A + +WE+   +R 
Sbjct: 940  DTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRK 999

Query: 564  IMREKHVGKLPGCSWAD-GIAFN 585
             M+++   + PGCSW + G  FN
Sbjct: 1000 RMQKRGFKQNPGCSWIEVGGKFN 1022



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 92/178 (51%), Gaps = 7/178 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    ++  G+++H H L++G   S L +A  L+ MY +CG    A LLFD +
Sbjct: 775 MACVLPACAGLAALDKGREIHGHILRRGYF-SDLHVACALVDMYAKCGLLVLAQLLFDMI 833

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P+++  SW  MI G+   G   +++  FN M     + ++ S++++++  + + L   E 
Sbjct: 834 PKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLN-EG 892

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
            K  +S     G++      + +V+L  + G+ + A + +  M  +PD      L+SG
Sbjct: 893 WKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 39/272 (14%)

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253
           F  TT + +   N+ I+ +    +   A+ L  K +   +    ++  SVL  C+    L
Sbjct: 328 FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYEL--GLNSYCSVLQLCAEKKSL 385

Query: 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
           E GK+VH           VI+++ +                       D  L   ++ +Y
Sbjct: 386 EDGKRVH----------SVIISNGI---------------------SIDEALGAKLVFMY 414

Query: 314 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
            +CG +   + IF  + N  +  WN ++   ++ G+  E++ LF  M KL +  + ++  
Sbjct: 415 VNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFT 474

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNT 431
            V+   A +  ++  ++V   V  +G  S+  +  SL+  Y K G    A  LF+E+   
Sbjct: 475 CVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-- 532

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
             +P ++++ ++++ C   G    G + F  M
Sbjct: 533 --EPDVVSWNSMINGCVVNGFSGNGLEIFIQM 562


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 184/608 (30%), Positives = 301/608 (49%), Gaps = 103/608 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C   +   +GK +H   +K G++   + + + L+ MY +C     A+ LF+EMP +
Sbjct: 112 VLKACGGLYKYVLGKMIHTCLVKTGLMMDIV-VGSSLVGMYAKCNAFEKAIWLFNEMPEK 170

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +   WN +I  + + G+ +++L+ F +M     + N  +    IS  A+  L  L  G +
Sbjct: 171 DVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCAR--LLDLNRGME 228

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  ++ +G   DS + S+LV++                               Y  CG 
Sbjct: 229 IHEELINSGFLLDSFISSALVDM-------------------------------YGKCGH 257

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  A  VF++    + V WNSMISGY    +    + LF +M   GV    +TL+S++  
Sbjct: 258 LEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMV 317

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS    L  GK VHG+  +  +  DV + S+L+D Y K                      
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFK---------------------- 355

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG++E A++IF+ +P   ++SWN MI G    G   EAL LF  M K  + 
Sbjct: 356 ---------CGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVE 406

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  +  SV++AC+ +++LE GE++   +    LD+++++  +L+D Y KCG        
Sbjct: 407 PDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSV 466

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                    Y AL LF EM  + +KP  +TF AILSAC H GLV
Sbjct: 467 FKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLV 526

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMWSSIL 512
            EG  +F+ M   Y I P +EHYSC++DL  RAG L+EA  +++Q P    DV + S++ 
Sbjct: 527 DEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLF 586

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H +  LG ++A  +I+ DP+++  YI LS+++A++ +W++  ++R  M+E  + K
Sbjct: 587 SACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKK 646

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 647 NPGCSWIE 654



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 149/570 (26%), Positives = 246/570 (43%), Gaps = 104/570 (18%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MDTR   L  LL++C    S+  GK +H   +  G+ N      N L+ +Y+ C     A
Sbjct: 1   MDTR--KLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKN-LINLYLSCHLYDHA 57

Query: 61  LLLFDEMPRRNCFS-WNAMIEGFMKLGHKEKSLQLFNVM---PQKNDFSWNMLISGFAKA 116
             +FD M      S WN ++ G+ K     ++L+LF  +   P     S+       A  
Sbjct: 58  KCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACG 117

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            L     GK IH+ ++  GL  D V+GSSLV +Y KC  F  A  + N M E D  C + 
Sbjct: 118 GLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNT 177

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           +IS Y   G                                  EAL  F  MRR G   +
Sbjct: 178 VISCYYQSGNFK-------------------------------EALEYFGLMRRFGFEPN 206

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           + T+ + +S+C+ L  L  G ++H      G + D  ++SAL+D Y K G          
Sbjct: 207 SVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCG---------- 256

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                                 +E A  +F  MP K++++WNSMI G    G  I  + L
Sbjct: 257 ---------------------HLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQL 295

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    ++    +L+S+I  C+  + L  G+ V        + SD  I++SL+D Y K
Sbjct: 296 FKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFK 355

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                 ++AL LF+EMR + V+P  ITFT++
Sbjct: 356 CGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSV 415

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L+AC     +++G++  + +  +  +D        ++D++A+ G ++EA ++ + +P + 
Sbjct: 416 LTACSQLAALEKGEEIHNLI-IEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KR 473

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           D+  W+S++    +HG   +  ++   M++
Sbjct: 474 DLVSWTSMITAYGSHGQAYVALELFAEMLQ 503


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 181/607 (29%), Positives = 301/607 (49%), Gaps = 102/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ    +  +  G+++H   +  G   S L     ++ +Y +C    DA  +F+ MP+R
Sbjct: 148 LLQLSGENLDLRRGREIHGMVITNG-FQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQR 206

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKADLAALEYGKQI 127
           +  SWN ++ G+ + G   +++Q+   M    QK D S  ++    A ADL AL  G+ I
Sbjct: 207 DLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPD-SITLVSVLPAVADLKALRIGRSI 265

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H +    G ++       +VN+                         +A++  Y  CG +
Sbjct: 266 HGYAFRAGFEY-------MVNV------------------------ATAMLDTYFKCGSV 294

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
             AR VF   +  + V WN+MI GY  N E  EA   F KM   GV     ++   L AC
Sbjct: 295 RSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHAC 354

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILL 306
           ++LG LE G+ VH                                +L  E K+ +D  ++
Sbjct: 355 ANLGDLERGRYVH--------------------------------RLLDEKKIGFDVSVM 382

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N++I++YS C R++ A  +F  + +K++++WN+MI+G +QNG   EAL+LFC M   D++
Sbjct: 383 NSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIK 442

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D F+L SVI+A A++S     + +        +D +  + T+L+D + KCG        
Sbjct: 443 PDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKL 502

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL LFNEM+N  VKP  ITF ++++AC H GLV
Sbjct: 503 FDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLV 562

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG  +F++MK  Y ++P ++HY  MVDL  RAG L++A   I+ MP +  + +  ++L 
Sbjct: 563 EEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLG 622

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  LG K A+ + +LDP++   ++ L++++A++  W+K + +R  M +K + K 
Sbjct: 623 ACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKT 682

Query: 574 PGCSWAD 580
           PGCS  +
Sbjct: 683 PGCSLVE 689



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 141/604 (23%), Positives = 256/604 (42%), Gaps = 118/604 (19%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C +   +H   Q+    +K G  N  L    +L+ ++ +  + T+A  +F+ + 
Sbjct: 48  AILLELCTSLKELH---QILPLIIKNGFYNEHL-FQTKLISLFCKFNSITEAARVFEPVE 103

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAALE 122
            +    ++ M++G+ K      +++ +       VMP   DF++ + +SG    +   L 
Sbjct: 104 HKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSG----ENLDLR 159

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G++IH  ++ NG   +    +++VNLY KC     A ++   M + D      L+S   
Sbjct: 160 RGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRD------LVS--- 210

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
                                 WN++++GY  N     A+ +  +M+  G   D+ TL S
Sbjct: 211 ----------------------WNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVS 248

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL A + L  L  G+ +HG+A + G    V VA+A+LDTY K                  
Sbjct: 249 VLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFK------------------ 290

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG +  A+ +F+ M +++++SWN+MI G +QNG   EA   F  M  
Sbjct: 291 -------------CGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLD 337

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
             +     S+   + ACAN+  LE G  V   +    +  D  +  SL+  Y KC     
Sbjct: 338 EGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDI 397

Query: 418 ---------------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                GY       +AL LF EM++  +KP   T  ++++A   
Sbjct: 398 AASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALAD 457

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
             + ++  KW   +  +  +D  +   + ++D  A+ G +  A  L + M  E  V  W+
Sbjct: 458 LSVTRQA-KWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQ-ERHVITWN 515

Query: 510 SILRGCVAHGDKGLGRKVAERMIELD----PENACAYIQLSSIFATSGEWEKSSLIRDIM 565
           +++ G   +G  G GR+  +   E+       N   ++ + +  + SG  E+     + M
Sbjct: 516 AMIDG---YGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESM 572

Query: 566 REKH 569
           +E +
Sbjct: 573 KENY 576


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  306 bits (784), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 191/603 (31%), Positives = 297/603 (49%), Gaps = 100/603 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C  +  +  GK++H   +  G  +  L     ++ MY +C    DA  +FD MP R
Sbjct: 36  LLKLCGDNSDLKRGKEIHGSVITSG-FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPER 94

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIH 128
           +   WN MI G+ + G  + +L L   M ++     ++ I     A AD   L  G  +H
Sbjct: 95  DLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVH 154

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            ++L  G +       SLVN+                         +AL+  Y+ CG ++
Sbjct: 155 GYVLRAGFE-------SLVNVS------------------------TALVDMYSKCGSVS 183

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR +FD     + V WNSMI GY+ + +   A+L+F KM   GV     T+   L AC+
Sbjct: 184 IARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACA 243

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLN 307
            LG LE GK VH                                KL  +LK+  D  ++N
Sbjct: 244 DLGDLERGKFVH--------------------------------KLVDQLKLDSDVSVMN 271

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           ++I++YS C R++ A  IF+ + NK+L+SWN+MI+G +QNG   EAL+ FC M   +++ 
Sbjct: 272 SLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKP 331

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------Y 419
           D F++ SVI A A +S     + +   V    LD +  + T+LVD Y KCG        +
Sbjct: 332 DSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLF 391

Query: 420 D-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
           D                         ++ LF EM+   +KP  ITF   LSAC H GLV+
Sbjct: 392 DMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVE 451

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG  +F++MK  Y I+P ++HY  MVDL  RAG LN+A + I++MP +  + ++ ++L  
Sbjct: 452 EGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGA 511

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H +  LG K A  + +L+P++   ++ L++I+AT+  W K + +R IM +  + K P
Sbjct: 512 CKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTP 571

Query: 575 GCS 577
           GCS
Sbjct: 572 GCS 574



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 143/345 (41%), Gaps = 66/345 (19%)

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           M+ GY  ++    AL  F +M+ + V         +L  C     L+ GK++HG     G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
              ++   + +++ Y+K    +DA  +F  +   D +  NTMI+                
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMIS---------------- 104

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
                          G +QNG    AL L   M++   R D  ++ S++ A A+   L +
Sbjct: 105 ---------------GYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRI 149

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD------------------- 420
           G  V   V   G +S   +ST+LVD Y KCG        +D                   
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQ 209

Query: 421 ------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                 A+ +F +M + GV+PT +T    L AC   G ++ G K+   +  Q  +D ++ 
Sbjct: 210 SGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG-KFVHKLVDQLKLDSDVS 268

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             + ++ ++++   ++ A ++ + +  +  V  W++++ G   +G
Sbjct: 269 VMNSLISMYSKCKRVDIAADIFKNLRNKTLVS-WNAMILGYAQNG 312


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  306 bits (784), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 182/632 (28%), Positives = 308/632 (48%), Gaps = 110/632 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSW----------------------------- 75
           N ++  Y+      +A  LFD+MP R+ +SW                             
Sbjct: 81  NSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNP 140

Query: 76  ---NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
              NAM+ G+ K    +++ +LF+ MP K+  SWN +++G+ +     +  G Q    + 
Sbjct: 141 VCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRN--GEMRLGLQFFEEMA 198

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
               + D V  + +V+ + + GD NS+ +    +  P+      ++ G+A  GK+ +ARR
Sbjct: 199 ----ERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARR 254

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           +FD+    + V WN+MI+ Y+ N    EA+ LF +M      +++ +  +V++    +G 
Sbjct: 255 LFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPE----KNSISWTTVINGYVRMGK 310

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L+  +Q+           +V   +A++  Y +     DA ++F+++ + D +  NTMI  
Sbjct: 311 LDEARQLLNQMP----YRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAG 366

Query: 313 YSSCGRIEDAKH-------------------------------IFRTMPNKSLISWNSMI 341
           YS CGR+++A H                               IF  M  K+++SWNS+I
Sbjct: 367 YSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLI 426

Query: 342 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 401
            GL+QNGS ++AL  F  M     + D+ + A  +S+CA++++L++G+Q+   V   G  
Sbjct: 427 SGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYA 486

Query: 402 SDQIISTSLVDFYCKCG---------------------------------YDALALFNEM 428
           +D  +S +L+  Y KCG                                  +AL LF++M
Sbjct: 487 TDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKM 546

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488
              GV P  +TF  ILSAC H GL+ +G K F  M   Y+I+P  EHY+CMVDL  RAG 
Sbjct: 547 EVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGR 606

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
           L EA  L+  M   A+ G+W ++L  C  HG+  L +  AE+++E +P     Y+ LS++
Sbjct: 607 LEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNM 666

Query: 549 FATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            A +G W++ + +R +M+EK   K PG SW +
Sbjct: 667 QAEAGRWDEVARVRRLMKEKGAEKQPGWSWIE 698



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 210/451 (46%), Gaps = 37/451 (8%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
           F  N  I    K G  ++++++F  M  KN  + N +IS FAK        G+   +  L
Sbjct: 16  FRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKN-------GRISDARQL 68

Query: 133 VNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
            +G+   +++  +S++  Y        A Q+ + M   D +  + +I+ Y   G++  AR
Sbjct: 69  FDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKAR 128

Query: 192 RVFD-RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
            +F+      + V  N+M++GY  N +  EA  LF  M      +D  +  S+L+  +  
Sbjct: 129 NLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAM----PAKDLVSWNSMLTGYTRN 184

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
           G +  G Q      +     DV+  + ++D + + G  + + + F ++   +T+   TM+
Sbjct: 185 GEMRLGLQFFEEMAE----RDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTML 240

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
             ++  G+I +A+ +F  MP +++++WN+MI    QN    EA+ LF  M +     +  
Sbjct: 241 CGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPE----KNSI 296

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM 428
           S  +VI+    +  L+   Q+  ++    + +     T+++  Y +     DA  +FN++
Sbjct: 297 SWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQ----TAMISGYVQNKRMDDARQIFNQI 352

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488
               V    + +  +++    CG + E    F  M     +  +I  ++ MV  +A+ G 
Sbjct: 353 SIRDV----VCWNTMIAGYSQCGRMDEALHLFKQM-----VKKDIVSWNTMVASYAQVGQ 403

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           ++ A+ + E+M  E ++  W+S++ G   +G
Sbjct: 404 MDAAIKIFEEMK-EKNIVSWNSLISGLTQNG 433



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 164/355 (46%), Gaps = 33/355 (9%)

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I+     G++++A +VF   T  ++V  NSMIS +  N   ++A  LF  M +  ++   
Sbjct: 22  ITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWN 81

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           S +A+ L        +E  +Q+           D+   + ++  Y++ G  + A  LF+ 
Sbjct: 82  SMIAAYLHNDR----VEEARQLFDKM----PTRDLYSWTLMITCYTRNGELAKARNLFNL 133

Query: 298 LKV-YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           L   ++ +  N M+  Y+   + ++A+ +F  MP K L+SWNSM+ G ++NG     L  
Sbjct: 134 LPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQF 193

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M + D+     S   ++     +  L    + F ++     + + +   +++  + +
Sbjct: 194 FEEMAERDV----VSWNLMVDGFVEVGDLNSSWEFFEKIP----NPNTVSWVTMLCGFAR 245

Query: 417 CGY--DALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
            G   +A  LF++M  RN      ++ + A+++A      V E    F  M  +  I   
Sbjct: 246 FGKIAEARRLFDQMPIRN------VVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSIS-- 297

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
              ++ +++ + R G L+EA  L+ QMP+  +V   ++++ G V +      R++
Sbjct: 298 ---WTTVINGYVRMGKLDEARQLLNQMPYR-NVAAQTAMISGYVQNKRMDDARQI 348



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 129/289 (44%), Gaps = 34/289 (11%)

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S+  S+G  EHG  V  H  K+  +              K G   +A K+F  +   +T+
Sbjct: 3   SSLKSVG--EHGSYVFRHNLKITQL-------------GKSGQIDEAIKVFQHMTHKNTV 47

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N+MI+ ++  GRI DA+ +F  MP ++++SWNSMI     N    EA  LF  M   D
Sbjct: 48  THNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRD 107

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DAL 422
           L    +S   +I+       L     +F    ++    + +   ++V  Y K     +A 
Sbjct: 108 L----YSWTLMITCYTRNGELAKARNLF---NLLPYKWNPVCCNAMVAGYAKNRQFDEAR 160

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LF+ M        ++++ ++L+     G ++ G ++F+ M      + ++  ++ MVD 
Sbjct: 161 RLFDAM----PAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA-----ERDVVSWNLMVDG 211

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           F   G LN +    E++P    V  W ++L G    G     R++ ++M
Sbjct: 212 FVEVGDLNSSWEFFEKIPNPNTVS-WVTMLCGFARFGKIAEARRLFDQM 259



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L SC    ++ VGKQLH   +K G   + L ++N L+ MY +CG+ + A LLF ++   +
Sbjct: 461 LSSCAHLAALQVGKQLHQLVMKSGYA-TDLFVSNALITMYAKCGSISSAELLFKDIDHFD 519

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM 98
             SWN++I  +   G+  ++L+LF+ M
Sbjct: 520 VVSWNSLIAAYALNGNGREALKLFHKM 546


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  306 bits (784), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 186/593 (31%), Positives = 300/593 (50%), Gaps = 77/593 (12%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           H   +K G+ N+   ++ +LL++ +      G P  A+ +F+     N   WN M+ G  
Sbjct: 2   HAQMVKTGLHNTNYALS-KLLELCVVSPHFDGLPY-AVSVFETXQEPNLLIWNTMLRGLA 59

Query: 84  KLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
                   L+++  M       N +++  L+   AK+     E G+QIH+ ++  G + D
Sbjct: 60  SSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSK--TFEEGRQIHAQVMKLGCELD 117

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
               +SL+++Y + G    A +V +   + D    +ALI+GYA+ G +  AR+VFD  T+
Sbjct: 118 RYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITE 177

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
              V WN+MI+GY+ N    EAL LF +M R  V  D  TL SVLSAC+  G +E G+++
Sbjct: 178 RDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREI 237

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H                 L+D +   G         S LK+     +N  I +YS CG +
Sbjct: 238 H----------------TLVDDHHGFG---------SSLKI-----VNAFIGLYSKCGDV 267

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           E A  +F  +  K ++SWN++I G +      EAL LF  M +     +  ++ SV+ AC
Sbjct: 268 EIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPAC 327

Query: 380 ANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCG------------------- 418
           A++ ++++G    V+    + G+ +   + TSL+D Y KCG                   
Sbjct: 328 AHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSS 387

Query: 419 --------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                           A  LF+ MR  G++P  IT   +LSAC H GL+  G+  F ++ 
Sbjct: 388 WNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVT 447

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             Y+I P++EHY CM+DL   AG   EA  +I  MP E D  +W S+L+ C  HG+  L 
Sbjct: 448 QDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELA 507

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
              A++++E++PEN+ +Y+ LS+I+AT+G WE  + IR+++  K + K+PGCS
Sbjct: 508 ESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCS 560


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  306 bits (784), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 180/609 (29%), Positives = 313/609 (51%), Gaps = 45/609 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           ++SC       V  QL L  L K        +A  ++ M++RCG    A   F ++ R  
Sbjct: 169 MKSCGALGWHEVALQL-LGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPT 227

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA--ALEYGKQIHS 129
            F  N+M+ G+ K    + +L+LF  MP+++  SWNM++S  +++  A  AL     +H+
Sbjct: 228 VFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHN 287

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALISGYANCG 185
                G+  DS   +S +    K        Q    V+  +   D +  SA++  YA CG
Sbjct: 288 ----RGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCG 343

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
              +ARRVF    D ++V W  +I G++     +E+L LF++MR   +  D   LA+++S
Sbjct: 344 CFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIIS 403

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            CS+   +   +Q+H  + K G    V+++++L+  Y+K G   +A  +FS ++  D + 
Sbjct: 404 GCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVS 463

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLD 364
              M+T YS  G I  A+  F  M  +++I+WN+M+    Q+G+  + L ++  M  + D
Sbjct: 464 WTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKD 523

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           +  D  +  ++   CA++ + +LG+Q+      +GL  D  +  +++  Y KCG      
Sbjct: 524 VIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEAR 583

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                        A+ +F++M   G KP  I++ A+LS+C H G
Sbjct: 584 KIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSG 643

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV+EG+ +FD +K  +++ P +EH+SCMVDL ARAG L EA NLI++MP +    +W ++
Sbjct: 644 LVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGAL 703

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  HG+  L    A+ + +LD  ++  Y+ L+ I+A +G+   S+ +R +MR+K + 
Sbjct: 704 LSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIK 763

Query: 572 KLPGCSWAD 580
           K PG SW +
Sbjct: 764 KNPGYSWME 772



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/513 (25%), Positives = 240/513 (46%), Gaps = 49/513 (9%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
            L+  I    +   N ++  Y + G+ +DA  LF  MPRR+  SWN ++ G+ + G    
Sbjct: 85  LLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLD 144

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKADLAAL---EYGKQIHSHILVNGLDFDSVLGSSLV 147
           +++ F  M +  D   N    G A     AL   E   Q+   +   G   D  + + +V
Sbjct: 145 AMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIV 204

Query: 148 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
           +++ +CG  + A++  + ++ P  FC +++++GYA    ++ A  +F+   +   V WN 
Sbjct: 205 DMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNM 264

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           M+S    +    EAL +   M   GV  D++T  S L+AC+ L  L  GKQ+H    +  
Sbjct: 265 MVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSL 324

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
              D  VASA+++ Y+K       C  F E                        A+ +F 
Sbjct: 325 PCIDPYVASAMVELYAK-------CGCFKE------------------------ARRVFS 353

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
           ++ +++ +SW  +I G  Q G   E+L+LF  M    + +D+F+LA++IS C+N   + L
Sbjct: 354 SLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCL 413

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILS 445
             Q+ +     G     +IS SL+  Y KCG   +A ++F+ M     +  I+++T +L+
Sbjct: 414 ARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSME----ERDIVSWTGMLT 469

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           A    G + + +++FD M  +  I      ++ M+  + + G   + + +   M  E DV
Sbjct: 470 AYSQVGNIGKAREFFDGMSTRNVIT-----WNAMLGAYIQHGAEEDGLKMYSAMLTEKDV 524

Query: 506 ----GMWSSILRGCVAHGDKGLGRKVAERMIEL 534
                 + ++ RGC   G   LG ++    +++
Sbjct: 525 IPDWVTYVTLFRGCADMGANKLGDQITGHTVKV 557



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 216/475 (45%), Gaps = 48/475 (10%)

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM-MKEPDDFCLSALISGYANCGK 186
           H  ++  GL     L ++L++ Y  CG    A  +L   + EP+    + +++GYA  G 
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLS 245
           ++DA  +F R        WN+++SGY  +    +A+  F  MRR+G  L +A T    + 
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           +C +LG+ E   Q+ G   K G   D  VA+ ++D + + G    A K FS+++      
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFC 230

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N+M+  Y+    ++ A  +F +MP + ++SWN M+  LSQ+G   EAL +  +M+   +
Sbjct: 231 RNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGV 290

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425
           R+D  +  S ++ACA +SSL  G+Q+ A+V       D  +++++V+ Y K         
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAK--------- 341

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
                                   CG  KE ++ F +++     D     ++ ++  F +
Sbjct: 342 ------------------------CGCFKEARRVFSSLR-----DRNTVSWTVLIGGFLQ 372

Query: 486 AGCLNEAVNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542
            GC +E++ L  QM  E    D    ++I+ GC    D  L R++    ++     A   
Sbjct: 373 YGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVI 432

Query: 543 I-QLSSIFATSGEWEKSSLIRDIMREKHV----GKLPGCSWADGIAFNCWFLDTM 592
              L S++A  G  + +  I   M E+ +    G L   S    I     F D M
Sbjct: 433 SNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGM 487



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 66/284 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++  C+    + + +QLH   LK G   + + I+N L+ MY +CGN  +A  +F  M
Sbjct: 398 LATIISGCSNRMDMCLARQLHSLSLKSGHTRAVV-ISNSLISMYAKCGNLQNAESIFSSM 456

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
             R+  SW  M+  + ++G+  K+ + F+ M  +N  +WN ++  + +            
Sbjct: 457 EERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYS 516

Query: 116 ----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                                 AD+ A + G QI  H +  GL  D+ + ++++ +Y KC
Sbjct: 517 AMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKC 576

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           G  + A ++ + +   D    +A+I+GY+  G    A  +FD                  
Sbjct: 577 GRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFD------------------ 618

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                         M + G   D  +  +VLS+CS  G ++ GK
Sbjct: 619 -------------DMLKKGAKPDYISYVAVLSSCSHSGLVQEGK 649


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 196/639 (30%), Positives = 319/639 (49%), Gaps = 105/639 (16%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R + +  LLQ+C     I VG++LH          +   +  R++ MY  CG+P+D+ ++
Sbjct: 104 RSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMV 163

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKND-FSWNMLISGFAKADL 118
           FD++ R+N F WNA++  + +    E ++ +F+    V   K D F+   +I   A A L
Sbjct: 164 FDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIK--ACAGL 221

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G+ IH   +   +D  S                             D F  +ALI
Sbjct: 222 LDLGLGQIIHG--MATKMDLVS-----------------------------DVFVGNALI 250

Query: 179 SGYANCGKMNDA-RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           + Y  CG + +A +RVFD     +   WN+++ GY  N++  +AL L+ +M  +G+  D 
Sbjct: 251 AMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDW 310

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T+ S+L ACS +  L +G+++HG A + G+  D  +  +LL                  
Sbjct: 311 FTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLL------------------ 352

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                        ++Y  CG+   A+ +F  M ++SL+SWN MI G SQNG P EA++LF
Sbjct: 353 -------------SLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLF 399

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M    ++  + ++  V  AC+ +S+L LG+++        L  D  +S+S++D Y K 
Sbjct: 400 RQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKG 459

Query: 418 G---------------------------------YDALALFNEMRNTGVKPTIITFTAIL 444
           G                                  +AL LF +M   G+KP   TFT IL
Sbjct: 460 GCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGIL 519

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
            AC H GLV++G ++F+ M   ++I+P++EHY+C+VD+  RAG +++A+ LIE+MP + D
Sbjct: 520 MACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPD 579

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
             +WSS+L  C  HG+ GLG KVA +++EL+PE    Y+ +S++FA SG+W+    +R  
Sbjct: 580 SRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGR 639

Query: 565 MREKHVGKLPGCSWAD--GIAFNCWFLDTMFLQLANFDE 601
           M++  + K  GCSW +  G   N    D M  +L    E
Sbjct: 640 MKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRE 678


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 179/563 (31%), Positives = 278/563 (49%), Gaps = 80/563 (14%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
           +R  N   A LLFD+MP R+  SWNAM+ G+ + G+ +++ ++F+ MP KN  SWN +++
Sbjct: 41  VRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLA 100

Query: 112 GFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
            + +                                      G    A ++     + + 
Sbjct: 101 AYVQN-------------------------------------GRIEDARRLFESKADWEL 123

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
              + ++ GY    ++ DAR +FDR  +   V WN+MISGY  N E  EA  LF +    
Sbjct: 124 ISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE---- 179

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
             + D  T  +++S     G L+  ++V  G   K  V  + I+A      Y +      
Sbjct: 180 SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAG-----YVQCKRMDQ 234

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
           A +LF  +   +    NTMIT Y+  G I  A++ F  MP +  ISW ++I G +Q+G  
Sbjct: 235 ARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 294

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
            EAL LF  M +   R+++ +  S +S CA I++LELG+QV  RV   GL+S   +  +L
Sbjct: 295 EEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNAL 354

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           +  YCKCG                                  +AL LF  M+ TG+ P  
Sbjct: 355 LVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDD 414

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           +T   +LSAC H GLV +G ++F +M   Y I    +HY+CM+DL  RAG L++A NL++
Sbjct: 415 VTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMK 474

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
            MPFE D   W ++L     HG+  LG K A+ + E++P+N+  Y+ LS+++A SG W  
Sbjct: 475 NMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGD 534

Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
              +R  MR++ V K+PG SW +
Sbjct: 535 VGRMRLRMRDRGVKKVPGYSWVE 557



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 204/447 (45%), Gaps = 78/447 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y + G   +A  LF+E P R+ F+W AM+ G+++ G  +++ ++F+ MP+KN  
Sbjct: 158 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 217

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SWN +I+G                                     Y +C   + A ++  
Sbjct: 218 SWNAIIAG-------------------------------------YVQCKRMDQARELFE 240

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
            M   +    + +I+GYA  G +  AR  FDR     S+ W ++I+GY  +    EAL L
Sbjct: 241 AMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHL 300

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
           F +M+R+G   + ST  S LS C+ +  LE GKQVHG   K G+     V +ALL  Y K
Sbjct: 301 FVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK 360

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
            G   DA  +F  ++  + +  NTMI  Y        A+H F                  
Sbjct: 361 CGNIDDAYIVFEGIEEKEVVSWNTMIAGY--------ARHGFGK---------------- 396

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSD 403
                  EAL LF +M K  +  D  ++  V+SAC++   ++ G + F  +T   G+ ++
Sbjct: 397 -------EALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITAN 449

Query: 404 QIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
               T ++D   + G   DA  L   M+N   +P   T+ A+L A    G  + G+K   
Sbjct: 450 SKHYTCMIDLLGRAGRLDDAQNL---MKNMPFEPDAATWGALLGASRIHGNTELGEK--- 503

Query: 462 AMKWQYHIDPEIEH-YSCMVDLFARAG 487
           A K  + ++P+    Y  + +L+A +G
Sbjct: 504 AAKMIFEMEPDNSGMYVLLSNLYAASG 530



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 11/201 (5%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   +K G L S   + N LL MY +CGN  DA ++F+ +  + 
Sbjct: 320 LSTCAEIAALELGKQVHGRVVKAG-LESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKE 378

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQ-IH 128
             SWN MI G+ + G  +++L LF  M +      ++ + G   A      ++ G +  +
Sbjct: 379 VVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFY 438

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSAL-----ISGYA 182
           S     G+  +S   + +++L G+ G  + A  ++ NM  EPD     AL     I G  
Sbjct: 439 SMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNT 498

Query: 183 NCGKMNDARRVFDRTTDTSSV 203
             G+   A+ +F+   D S +
Sbjct: 499 ELGE-KAAKMIFEMEPDNSGM 518


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 179/610 (29%), Positives = 299/610 (49%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C ++ ++  G+QLH + +K GI +S + +   LL +Y+ C +   A  +F   
Sbjct: 317 VASLLSACASNGALCKGEQLHSYVIKAGI-SSDMIVEGALLDLYVNCSDIKTAHEMFLTA 375

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              N   WN M+  F KL +  +S ++F  M  K    N F++  ++       + AL+ 
Sbjct: 376 QTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILR--TCTSVGALDL 433

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH+ ++  G  F+  + S L+++Y K                               
Sbjct: 434 GEQIHTQVIKTGFQFNVYVCSVLIDMYAKH------------------------------ 463

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            GK++ A  +    T+   V W ++ISGY  +N   EAL  F +M   G+  D    +S 
Sbjct: 464 -GKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSA 522

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +SAC+ +  L  G+Q+H  +   G  +D+ + +AL                         
Sbjct: 523 ISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNAL------------------------- 557

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                 +++Y+ CGRI++A   F  +  K  ISWN +I G +Q+G   +AL +F  MN+ 
Sbjct: 558 ------VSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRA 611

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            L    F+  S +SA ANI++++ G+Q+ A +   G DSD  +S +L+ FY KCG     
Sbjct: 612 KLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDA 671

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +A+ LF +M+  G  P  +TF  +LSAC H 
Sbjct: 672 RREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHV 731

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV +G  +F++M  ++ + P+  HY+C+VDL +RAG L+ A   IE+MP E D  +W +
Sbjct: 732 GLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRT 791

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +G   A+ ++EL+PE++  Y+ LS+++A SG+W+     R +MR + V
Sbjct: 792 LLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGV 851

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 852 KKEPGRSWIE 861



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 141/557 (25%), Positives = 243/557 (43%), Gaps = 119/557 (21%)

Query: 8   LARLLQSCNTHH-SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            A +L++C+ H   I   +Q+H   +  G+L S + I+N L+ +Y + G    A  +FD 
Sbjct: 114 FASVLRACSGHRIGIRYAEQIHARIICHGLLCSPI-ISNPLIGLYAKNGLIISARKVFDN 172

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS----WNMLISGFAKADLAALE 122
           +  ++  SW AMI GF + G++E+++ LF  M     F     ++ ++SG  K  L   +
Sbjct: 173 LCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKL--FD 230

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+Q+H+ +   G   ++ + ++LV LY +  +F SA                       
Sbjct: 231 VGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSA----------------------- 267

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
                    +VF +      V +NS+ISG         AL LF KM+R+ +  D  T+AS
Sbjct: 268 --------EKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVAS 319

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +LSAC+S G L  G+Q+H +  K G+  D+IV  ALLD                      
Sbjct: 320 LLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLD---------------------- 357

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                    +Y +C  I+ A  +F T   ++++ WN M+V   +  +  E+  +F  M  
Sbjct: 358 ---------LYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQI 408

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
             L  ++F+  S++  C ++ +L+LGEQ+  +V   G   +  + + L+D Y K G    
Sbjct: 409 KGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDT 468

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +AL  F EM N G++   I F++ +SAC  
Sbjct: 469 AHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAG 528

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYS-------CMVDLFARAGCLNEAVNLIEQMPFE 502
              + +G+        Q H    +  YS        +V L+AR G + EA    E++  +
Sbjct: 529 IQALNQGR--------QIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAK 580

Query: 503 ADVGMWSSILRGCVAHG 519
             +  W+ ++ G    G
Sbjct: 581 DSIS-WNGLISGFAQSG 596



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 142/549 (25%), Positives = 246/549 (44%), Gaps = 111/549 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    S+   K+LH   LK G  N ++ + N+L+ +Y   G+    + +F++MP R
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESV-LCNKLVDVYFALGDLDGVVKVFEDMPNR 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEYGKQI 127
           +  SW+ +I GFM+     + L LF+ M ++N     +  +   +A       + Y +QI
Sbjct: 75  SVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQI 134

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H+ I+ +GL    ++ + L+ LY K G   SA +V       D+ C              
Sbjct: 135 HARIICHGLLCSPIISNPLIGLYAKNGLIISARKVF------DNLC-------------- 174

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
                    T D+ S  W +MISG+  N  + EA+ LF +M   G+       +SVLS C
Sbjct: 175 ---------TKDSVS--WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGC 223

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + +   + G+Q+H    K G   +  V +AL+  YS+      A K+FS+++  D     
Sbjct: 224 TKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDE---- 279

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                                      +S+NS+I GL+Q G    AL+LF  M +  L+ 
Sbjct: 280 ---------------------------VSFNSLISGLAQQGFSDGALELFTKMKRDYLKP 312

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
           D  ++AS++SACA+  +L  GEQ+ + V   G+ SD I+  +L+D Y  C          
Sbjct: 313 DCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMF 372

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                    ++  +F +M+  G+ P   T+ +IL  C   G + 
Sbjct: 373 LTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALD 432

Query: 455 EGQKWFDAM---KWQYHIDPEIEHYSC--MVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            G++    +    +Q+++      Y C  ++D++A+ G L+ A ++I +   E DV  W+
Sbjct: 433 LGEQIHTQVIKTGFQFNV------YVCSVLIDMYAKHGKLDTA-HVILRTLTEDDVVSWT 485

Query: 510 SILRGCVAH 518
           +++ G   H
Sbjct: 486 ALISGYAQH 494



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 121/561 (21%), Positives = 231/561 (41%), Gaps = 94/561 (16%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K++H  IL  G   +SVL + LV++Y   GD                             
Sbjct: 30  KKLHGKILKLGFGNESVLCNKLVDVYFALGD----------------------------- 60

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             ++   +VF+   + S   W+ +ISG++        L LF  M    V     + ASVL
Sbjct: 61  --LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVL 118

Query: 245 SACSS--LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
            ACS   +G + + +Q+H      G++   I+++ L+  Y+K G+   A K+F  L   D
Sbjct: 119 RACSGHRIG-IRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKD 177

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
           ++    MI+ +S  G  E+A H+F  M    +     +   +    + I+  D+   ++ 
Sbjct: 178 SVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHA 237

Query: 363 LDLR----MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           L  +    ++ +   ++++  + + +    E+VF+++       D++   SL+    + G
Sbjct: 238 LVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQ----SKDEVSFNSLISGLAQQG 293

Query: 419 YD--ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEH 475
           +   AL LF +M+   +KP  +T  ++LSAC   G + +G++     +K     D  +E 
Sbjct: 294 FSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEG 353

Query: 476 -----------------------------YSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
                                        ++ M+  F +   L+E+  +  QM  +  + 
Sbjct: 354 ALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIP 413

Query: 507 ---MWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKSSLIR 562
               + SILR C + G   LG ++  ++I+   + N      L  ++A  G+ + + +I 
Sbjct: 414 NQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVIL 473

Query: 563 DIMREKHVGKLPGCSWA---DGIAFNCWFLDTM--FLQLAN----FDEIKQHQSADFCDY 613
             + E  V      SW     G A +  F + +  F ++ N     D I    +   C  
Sbjct: 474 RTLTEDDV-----VSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAG 528

Query: 614 IHGFDQARLPLSSKRSFVLGY 634
           I   +Q R   +  +S+V GY
Sbjct: 529 IQALNQGRQIHA--QSYVSGY 547


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 183/604 (30%), Positives = 299/604 (49%), Gaps = 98/604 (16%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C    +I  G+ LH   +K G++NS   +++ L+ MYM+ G       +F +M +RN
Sbjct: 164 LKACGLGVNICFGELLHGFSVKSGLINSVF-VSSALIDMYMKVGKIEQGCRVFKKMTKRN 222

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM--PQKNDFSWNMLISGFAKADLAALEYGKQIHS 129
             SW A+I G +  G+  ++L  F+ M   +    S    I+  A AD + L +GK IH+
Sbjct: 223 VVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHT 282

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
             +  G D  S + ++L  +Y KCG  +   ++   MK PD    + LI+ Y   G    
Sbjct: 283 QTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKG---- 338

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
                                      E+  A+  F +MR++ V  +  T A+V+SAC++
Sbjct: 339 ---------------------------EEEHAVEAFKRMRKSNVSPNKYTFAAVISACAN 371

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L   + G+Q+HGH  ++G++D + VA++++  YSK G+   A  +F  +   D I  +T+
Sbjct: 372 LAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTI 431

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           I VY                               SQ G   EA D    M +   + ++
Sbjct: 432 IAVY-------------------------------SQGGYAKEAFDYLSWMRREGPKPNE 460

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
           F+L+SV+S C +++ LE G+QV A V  IG+D + ++ ++L+  Y KCG           
Sbjct: 461 FALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNG 520

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +A+ LF ++ + G+KP  +TF  +L+AC H G+V  G
Sbjct: 521 MKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLG 580

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             +F  M  +Y I P  EHY C++DL  RAG L+EA ++I  MP   D  +WS++LR C 
Sbjct: 581 FYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCR 640

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            HGD   GR  AE+++ LDP +A  +I L++I+A  G W++++ IR +M+ K V K  G 
Sbjct: 641 VHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGW 700

Query: 577 SWAD 580
           SW +
Sbjct: 701 SWVN 704



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 191/463 (41%), Gaps = 88/463 (19%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
           LF   PQ+    W  L   +A +   AL     +HS   V   + DS L  S      +C
Sbjct: 14  LFKPSPQR---FW--LHRSYASSPALALHPPSSLHSMTAVFSRNLDSPLTYSSPGTATEC 68

Query: 154 GDF----------NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
            +            +A  V NM++      L++ +      G++  +R +FD+ T    +
Sbjct: 69  RELIQQAKQEQLAQNAYSVHNMLE------LNSELKQLVKQGQLCKSRYMFDKMTHRDEI 122

Query: 204 MWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
            W ++I+GY++ ++  EAL+LF  M  + G+  D   ++  L AC     +  G+ +HG 
Sbjct: 123 SWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGF 182

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           + K G+I+ V V+SAL+D Y K G                               +IE  
Sbjct: 183 SVKSGLINSVFVSSALIDMYMKVG-------------------------------KIEQG 211

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             +F+ M  ++++SW ++I GL   G  +EAL  F  M    +  D  + A  + A A+ 
Sbjct: 212 CRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADS 271

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------------- 419
           S L  G+ +  +    G D    +  +L   Y KCG                        
Sbjct: 272 SLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLI 331

Query: 420 ----------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                      A+  F  MR + V P   TF A++SAC +  + K G++    +     +
Sbjct: 332 TTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLV 391

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           D  +   + +V L++++G L  A +L+       D+  WS+I+
Sbjct: 392 DA-LSVANSIVTLYSKSGLLKSA-SLVFHGITRKDIISWSTII 432



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 168/373 (45%), Gaps = 84/373 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++ +C        G+Q+H H L+ G++++ L +AN ++ +Y + G    A L+F  +
Sbjct: 362 FAAVISACANLAIAKWGEQIHGHVLRLGLVDA-LSVANSIVTLYSKSGLLKSASLVFHGI 420

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
            R++  SW+ +I  + + G+ +++    + M    P+ N+F+ + ++S      +A LE 
Sbjct: 421 TRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLS--VCGSMALLEQ 478

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H+H+L  G+D ++++ S+L+++Y KCG    A+++ N MK  +    +A+I+GYA 
Sbjct: 479 GKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAE 538

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G                                  EA+ LF K+   G+  D  T   V
Sbjct: 539 HGY-------------------------------SQEAINLFEKISSVGLKPDYVTFIGV 567

Query: 244 LSACSSLGFLEHG----------KQVHGHACKVGVIDDVIVASALLDTYSK--RGMPSDA 291
           L+ACS  G ++ G           Q+       G I D++  +  L       R MP   
Sbjct: 568 LTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMP--- 624

Query: 292 CKLFSELKVYDTILLN-----------------------------TMITVYSSCGRIEDA 322
           C  +++  V+ T+L +                              +  +Y++ GR ++A
Sbjct: 625 C--YTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEA 682

Query: 323 KHIFRTMPNKSLI 335
            HI + M +K +I
Sbjct: 683 AHIRKLMKSKGVI 695


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 190/605 (31%), Positives = 302/605 (49%), Gaps = 98/605 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C T  +   G QLH   +  G       +AN L+ MY +CGN   A  LF+ MP+ 
Sbjct: 219 ILSICATRGNFCAGTQLHGLVIGSG-FEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQT 277

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGKQIH 128
           +  +WN +I G+++ G  +++  LFN M        ++  + F  + L   +L + K++H
Sbjct: 278 DTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVH 337

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           S+I+ + + FD  L S+L+++Y K GD                               + 
Sbjct: 338 SYIVRHRVPFDVYLKSALIDVYFKGGD-------------------------------VE 366

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR++F +       +  +MISGY+ +  + +A+  F  + + G++ ++ T+ASVL AC+
Sbjct: 367 MARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACA 426

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           ++  L+ GK++H H  K  + + V V SA+ D Y+K                        
Sbjct: 427 AVAALKPGKELHCHILKKRLENIVNVGSAITDMYAK------------------------ 462

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  CGR++ A   FR M ++  + WNSMI   SQNG P  A+DLF  M     + D
Sbjct: 463 -------CGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFD 515

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA----- 423
             SL+S +SA AN+ +L  G+++   V      SD  ++++L+D Y KCG  ALA     
Sbjct: 516 SVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFN 575

Query: 424 ----------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                       L++EM   G+ P  +TF  I+SAC H GLV E
Sbjct: 576 LMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDE 635

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G  +F  M  +Y I   +EHY+CMVDL+ RAG ++EA + I+ MPF  D G+W ++L  C
Sbjct: 636 GIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGAC 695

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             HG+  L +  +  ++ELDP+N+  Y+ LS++ A +GEW     +R +M+EK V K+PG
Sbjct: 696 RLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPG 755

Query: 576 CSWAD 580
            SW D
Sbjct: 756 YSWID 760



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 125/525 (23%), Positives = 232/525 (44%), Gaps = 56/525 (10%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D+    L  L ++C+    +   +Q+H   +  G+ +   P ++R+L +Y+ CG   DA
Sbjct: 7   LDSLTTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAP-SSRVLGLYVLCGRFRDA 65

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA 120
             LF E+  R    WN MI G   LG                   W          D A 
Sbjct: 66  GNLFFELELRYALPWNWMIRGLYMLG-------------------W---------FDFAL 97

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA-------NQVLNMMKEPDDFC 173
           L Y K + S++  +   F  V+ +        CG  N+        +   ++    D F 
Sbjct: 98  LFYFKMLGSNVSPDKYTFPYVIKA--------CGGLNNVPLCMVVHDTARSLGFHVDLFA 149

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
            SALI  YA+ G + DARRVFD      +++WN M+ GY+ + +   A+  F +MR +  
Sbjct: 150 GSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYS 209

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           + ++ T   +LS C++ G    G Q+HG     G   D  VA+ L+  YSK G    A K
Sbjct: 210 MVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARK 269

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGS 349
           LF+ +   DT+  N +I  Y   G  ++A  +F  M +  +    +++ S +  + ++GS
Sbjct: 270 LFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGS 329

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
                ++   + +  +  D +  +++I        +E+  ++F +  ++    D  + T+
Sbjct: 330 LRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILV----DVAVCTA 385

Query: 410 LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
           ++  Y   G   DA+  F  +   G+    +T  ++L AC     +K G++       + 
Sbjct: 386 MISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKE-LHCHILKK 444

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
            ++  +   S + D++A+ G L+ A     +M  + D   W+S++
Sbjct: 445 RLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS-DRDSVCWNSMI 488



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 46/337 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    ++  GK+LH H LKK + N  + + + +  MY +CG    A   F  M
Sbjct: 418 MASVLPACAAVAALKPGKELHCHILKKRLEN-IVNVGSAITDMYAKCGRLDLAYEFFRRM 476

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKADLAALEYG 124
             R+   WN+MI  F + G  E ++ LF  M     K D S ++  +  A A+L AL YG
Sbjct: 477 SDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFD-SVSLSSALSAAANLPALYYG 535

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K++H +++ N    D+ + S+L+++Y KCG+   A  V N+M   ++             
Sbjct: 536 KEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNE------------- 582

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                             V WNS+I+ Y ++    E L L+H+M R G+  D  T   ++
Sbjct: 583 ------------------VSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVII 624

Query: 245 SACSSLGFLEHGKQVHGHAC---KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-V 300
           SAC   G ++ G  +H   C   + G+   +   + ++D Y + G   +A      +   
Sbjct: 625 SACGHAGLVDEG--IHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFT 682

Query: 301 YDTILLNTMITVYSSCGRIEDAK----HIFRTMPNKS 333
            D  +  T++      G +E AK    H+    P  S
Sbjct: 683 PDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNS 719


>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
 gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
          Length = 650

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 198/628 (31%), Positives = 308/628 (49%), Gaps = 83/628 (13%)

Query: 26  QLHLHFLKKGILN-----------STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           ++H  FL  G+L            +T   A RLL   +       +L LF  +   N F+
Sbjct: 22  EIHAQFLASGLLADAYAASRLLLFTTSATAARLLPQPLH-----HSLQLFRLVRSPNAFT 76

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVN 134
            N +I   ++ G       L+  MP   D   + L++    A   A E G+Q+HSH + +
Sbjct: 77  CNTLIRAALRQGLPHLCFPLYASMPAAPDTYTHPLLAAACAARGDARE-GRQVHSHAVKH 135

Query: 135 GLDFDSVLGSSLVNLYGKCG-------------------------------DFNSANQVL 163
           G   +  L ++L+++Y  CG                               D   A  V 
Sbjct: 136 GFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVGVF 195

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
             M E     +S++++ +A  G + +AR VFD      +  W +MIS +  N+   EAL 
Sbjct: 196 ARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALA 255

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           +F  MR  G   D + + SV++AC+    +++G+  HG   + G+   V V +AL+  YS
Sbjct: 256 VFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYS 315

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
                  A +LF   +  D    N+MI+ Y   GR+EDAK +F  MP+K  +SW++MI G
Sbjct: 316 SCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAG 375

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
             QN    EAL +F NM   +++ D+ +L SVISAC N+ +LE G+ V   +     +  
Sbjct: 376 CVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNIT 435

Query: 404 QIISTSLVDFYCKCG--------YD-------------------------ALALFNEMRN 430
            ++ TSL+D Y KCG        +D                         +L +F+EM  
Sbjct: 436 IVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMET 495

Query: 431 TGVK-PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
           +G+  P+ ITFT +LSAC H GLV+EG+++F  M+ +Y I P I HY CMVDL  RAG +
Sbjct: 496 SGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRAGYV 555

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549
            EA +LI+ MP   DV  W ++L  C  H D  +G +V +++++LDP +      LS+I+
Sbjct: 556 REAEDLIQSMPMSPDVPAWGALLGACWKHSDSEVGERVGKKLVKLDPHHDGFQTMLSNIY 615

Query: 550 ATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           A+ G W+    +R  M++ HV K+ GCS
Sbjct: 616 ASEGMWQCVKDLRGSMKQ-HVAKVAGCS 642



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 124/285 (43%), Gaps = 66/285 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C     I  G+  H   ++ G L S + + N L+ MY  C +   A  LFD  
Sbjct: 272 MVSVVAACAKSEVIQNGEVCHGLVVRAG-LGSRVNVQNALIHMYSSCLDVVAARRLFDSS 330

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
              + FSWN+MI G++K G  E +  LFNVMP K++ SW+ +I+G  +            
Sbjct: 331 ESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFD 390

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                 +L ALE GK +H +I     +   VLG+SL+++Y KCG
Sbjct: 391 NMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCG 450

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
              +A +V +M++E    C                               WN++I G   
Sbjct: 451 CMEAALEVFDMVEEKGTPC-------------------------------WNAVIVGLAM 479

Query: 215 NNEDTEALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQ 258
           N   T +L +F +M  +G+ +    T   VLSAC   G +E G+Q
Sbjct: 480 NGLVTRSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQ 524


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 185/564 (32%), Positives = 276/564 (48%), Gaps = 99/564 (17%)

Query: 54  CGNPT--DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
           C  PT   A  +FD+MP+R+ F WN +I G+   G  E++L L++ M     F  N    
Sbjct: 73  CLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFP 132

Query: 112 GFAK--ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
              +  A L+AL  GK++H +I+ +G D D  + SSLV +Y      + + + L M    
Sbjct: 133 FVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMY------SQSGETLGM---- 182

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
                                  VF      + V W ++I+GY+ N    E L +F +M 
Sbjct: 183 ---------------------ELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMV 221

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
            +G   +A TL SVL AC+ L FL  GK +HG+  K+GV  DV                 
Sbjct: 222 GSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVS---------------- 265

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
                          L N +I +Y  CG +E A+ +F  M  ++L+SWN+MI    QN +
Sbjct: 266 ---------------LTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNA 310

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
              A+ LF  M    +  D  ++ SVISACA++ +L  G  +   V   GL+ +  I+ +
Sbjct: 311 GANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNA 370

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           L+D Y KCG                                  DAL LF+ M++ GVKP 
Sbjct: 371 LIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPN 430

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
             TF A+ +AC H GLV+EG+K F++M   Y I P +EH +CMVDL  RAG L EA   I
Sbjct: 431 SFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFI 490

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
           ++MP E DV +W ++L  C  H +  L   VAE++  LDP+    Y+ +S+I+A +G WE
Sbjct: 491 DKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWE 550

Query: 557 KSSLIRDIMREKHVGKLPGCSWAD 580
            ++ +R +M E+ + K+PG S  +
Sbjct: 551 DAARLRKLMEERELKKIPGHSLVE 574



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 169/365 (46%), Gaps = 70/365 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C     +++GK +H + +K G+ +  + + N L+ +Y +CGN   A  LFD M
Sbjct: 232 LVSVLPACAGLEFLNLGKLIHGYGIKLGV-DPDVSLTNALIALYGKCGNVETARSLFDGM 290

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDFSWNMLISGF-AKADLAALEYGK 125
             +N  SWNAMI  + +      +++LF  M  +K DF +  ++S   A A L AL  G+
Sbjct: 291 VVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGR 350

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H  +   GL+ +  + ++L+++Y KCG+                              
Sbjct: 351 WMHELVKRKGLEINVSITNALIDMYAKCGN------------------------------ 380

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++ AR VF+R    S V W SMI    S+    +AL LF +M+  GV  ++ T A+V +
Sbjct: 381 -IDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFT 439

Query: 246 ACSSLGFLEHGKQ-----VHGHACKVGV------IDDVIVASALLDTYS-KRGMPSD--- 290
           AC   G +E G++     +  ++   GV      +D +  A +L++ Y     MP +   
Sbjct: 440 ACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDV 499

Query: 291 --------ACKLFSELKVYDTI-----LLNT--------MITVYSSCGRIEDAKHIFRTM 329
                   +C++ S L++ + +     LL+         M  +Y+  GR EDA  + + M
Sbjct: 500 SVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLM 559

Query: 330 PNKSL 334
             + L
Sbjct: 560 EEREL 564



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 37/244 (15%)

Query: 304 ILLNTMITVYSSC--GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           +LL+T + + + C    ++ A+ +F  MP + +  WN++I G +  G   EAL L+ NM+
Sbjct: 61  LLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMH 120

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
              L  D ++   V+ +CA +S+L  G++V   +   G DSD  + +SLV  Y + G   
Sbjct: 121 GAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETL 180

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          + L +F EM  +G +P  +T  ++L AC 
Sbjct: 181 GMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACA 240

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
               +  G K       +  +DP++   + ++ L+ + G +  A +L + M  +  V  W
Sbjct: 241 GLEFLNLG-KLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVS-W 298

Query: 509 SSIL 512
           ++++
Sbjct: 299 NAMI 302


>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 194/643 (30%), Positives = 311/643 (48%), Gaps = 122/643 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C T  S+   +++H   +  G L+  L    +L+ +Y   G+   A L+FD +   
Sbjct: 92  LLGICKTVSSL---RKIHALLVVHG-LSEDLLCETKLVSLYGSFGHVECARLMFDRIRNP 147

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKA--DLAALEYGKQ 126
           + +SW  MI  +       + +Q +N   +K  N++  N++ S   KA  +L   + G++
Sbjct: 148 DLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYD-NVVFSIVLKACSELRETDEGRK 206

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  I+  G                                 PD F L+ L+  YA C +
Sbjct: 207 LHCQIVKVG--------------------------------SPDSFVLTGLVDMYAKCRE 234

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + D+RRVFD   D + V W SMI GY+ N+   E L+LF++MR   V  +  TL S+++A
Sbjct: 235 VEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTA 294

Query: 247 CSSLGFLEHGKQVHGHACKVG--------------------------VID-----DVIVA 275
           C+ LG L  GK VHG+  K G                          V D     D++  
Sbjct: 295 CTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSW 354

Query: 276 SALLDTYSKRGMPSDACKLFSE-------------------------------------- 297
           +A++  Y++RG P +A KLF++                                      
Sbjct: 355 TAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIK 414

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           L   D    N ++ +Y+ C  I DA+++F T+ +K +I+WNS+I G +QNG   EAL+LF
Sbjct: 415 LGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELF 474

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M    +  D  +L SV+SACA++ +  +G  +       GL S +  S SL       
Sbjct: 475 DQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGRDCSRSL------- 527

Query: 418 GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
                 LF +M    ++P  + FT ILSAC H G++ EG ++F+ M   Y+  P ++HY+
Sbjct: 528 -----ELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYA 582

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
           CMVDL ARAG L EA++ IE++P + DV +  + L GC  H    LG     RM+EL P+
Sbjct: 583 CMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPD 642

Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            AC Y+ +S+++A+ G W +++ + ++M+++ + KLPG S  D
Sbjct: 643 KACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVD 685



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 180/418 (43%), Gaps = 73/418 (17%)

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFD 195
           S+  +   +L G C   +S  ++  ++       D  C + L+S Y + G +  AR +FD
Sbjct: 83  SISSNPCFSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFD 142

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLE 254
           R  +     W  MI  Y  N+  +E +  ++   R  + E D    + VL ACS L   +
Sbjct: 143 RIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETD 202

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G+++H    KVG  D  ++ + L+D Y+K                              
Sbjct: 203 EGRKLHCQIVKVGSPDSFVL-TGLVDMYAK------------------------------ 231

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            C  +ED++ +F  + +++++ W SMIVG  QN    E L LF  M +  +  ++++L S
Sbjct: 232 -CREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGS 290

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------- 418
           +++AC  + +L  G+ V   V   G D +  + T L+D Y KCG                
Sbjct: 291 LVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTID 350

Query: 419 -----------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                             +AL LF + R   + P  +T +++LSAC   G +  G+    
Sbjct: 351 LVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHC 410

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
                   D   E+   +VD++A+   + +A  + E + F+ DV  W+SI+ G   +G
Sbjct: 411 LGIKLGSEDATFEN--ALVDMYAKCHMIGDARYVFETV-FDKDVIAWNSIISGYTQNG 465



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 177/399 (44%), Gaps = 61/399 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  L+ +C    ++H GK +H + +K G  LNS L     LL +Y +CG+  DA  +FDE
Sbjct: 288 LGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFL--VTPLLDLYFKCGDIRDAFSVFDE 345

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYG 124
           +   +  SW AMI G+ + G+  ++L+LF     K+     +  S    A A   +L  G
Sbjct: 346 LSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMG 405

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           + +H   +  G + D+   ++LV++Y KC     A  V   + + D    +++ISGY   
Sbjct: 406 RSVHCLGIKLGSE-DATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQ- 463

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                                         N    EAL LF +MR + V  DA TL SVL
Sbjct: 464 ------------------------------NGYAYEALELFDQMRSDSVYPDAITLVSVL 493

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL---DTYSKRGMPSDACKLFSELKVY 301
           SAC+S+G    G  +HG+A K G++     + +L    D   ++  P++           
Sbjct: 494 SACASVGAYRVGSSLHGYAIKAGLLSGRDCSRSLELFGDMLKEKLEPNE----------- 542

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNGSPIEALDL 356
             ++  T+++  S  G + +    F TM        S+  +  M+  L++ G   EALD 
Sbjct: 543 --VIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDF 600

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
              + K+ ++ D   L + +  C   S  +LGE    R+
Sbjct: 601 ---IEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRM 636


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 201/654 (30%), Positives = 320/654 (48%), Gaps = 116/654 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C    ++  G++ H   +K G L+    + N LL MY +CG+  DA+ LFD M
Sbjct: 145 LASVLSACGAVAALDDGRRCHGLAVKVG-LDGNQFVENGLLGMYTKCGSVADAVRLFDWM 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA-----DL 118
              N  S+ AM+ G  + G  + +L+LF  M +     +  + + ++   A+A     ++
Sbjct: 204 SSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNV 263

Query: 119 A-ALEYGKQIHSHILVNGLDFDSVLGSSLVNLY--------------------------- 150
           A A+   + IH+ ++  G D D  +G+SL+++Y                           
Sbjct: 264 ARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNIL 323

Query: 151 ----GKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMND---ARRVFDRTTD 199
               G+ G +  A +VL++M+E    P++   S ++   A+C K  D   AR +FD+ + 
Sbjct: 324 VTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNML---ASCIKARDVPSARAMFDKISK 380

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            S   WN+++SGY       + + LF +M+   V  D +TLA +LS CS LG LE GKQV
Sbjct: 381 PSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQV 440

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H  + K+ + +D+ VAS L+D YSK                               CG++
Sbjct: 441 HSASVKLLLHNDMFVASGLIDMYSK-------------------------------CGQV 469

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
             A+ IF  M  + ++ WNSMI GL+ +    EA D F  M +  +   + S AS+I++C
Sbjct: 470 GIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSC 529

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------- 418
           A +SS+  G Q+ A+V   G D +  + +SL+D Y KCG                     
Sbjct: 530 ARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWN 589

Query: 419 ------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                         A+ LF  M  T  KP  +TF A+L+ C H GLV E   +F++M+  
Sbjct: 590 EMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAYFNSMESN 649

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           Y I P +EHY+C++D   RAG   E V +I++MP++ D  +W  +L  CV H +  LG  
Sbjct: 650 YGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAACVVHHNAELGEF 709

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            A+ +  LDP+N   Y+ LS+I+AT G    +S +R +M  + V K  G SW +
Sbjct: 710 AAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVN 763



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 129/567 (22%), Positives = 249/567 (43%), Gaps = 91/567 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           NRL+++Y   G P  AL  F  +PR N +S+NA I    + G    +  L   MP +N  
Sbjct: 49  NRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAV 108

Query: 105 SWNMLISGFAKADLA--ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ- 161
           SWN +I+  A++D    ALE    ++  +L  GL   +   +S+++  G     +   + 
Sbjct: 109 SWNTVIAAVARSDSPGEALE----MYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRC 164

Query: 162 ---VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
               + +  + + F  + L+  Y  CG + DA R+FD  +  + V + +M+ G   +   
Sbjct: 165 HGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAV 224

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH--------GKQVHGHACKVGVID 270
            +AL LF +M R+ +  D   ++SVL AC+     ++         + +H    + G   
Sbjct: 225 DDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDS 284

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY----------------- 313
           D  V ++L+D Y+K     +A K+F  +     +  N ++T Y                 
Sbjct: 285 DQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQ 344

Query: 314 ---------------SSCGRIED---AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                          +SC +  D   A+ +F  +   S+ +WN+++ G  Q     + ++
Sbjct: 345 ESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIE 404

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  M   +++ D+ +LA ++S C+ +  LELG+QV +    + L +D  +++ L+D Y 
Sbjct: 405 LFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYS 464

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +A   F +MR  G+ PT  ++ +
Sbjct: 465 KCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYAS 524

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           ++++C     + +G++   A   +   D  +   S ++D++A+ G +++A      M  +
Sbjct: 525 MINSCARLSSIPQGRQ-IHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVK 583

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAE 529
            ++  W+ ++ G   +   G G K  E
Sbjct: 584 -NIVAWNEMIHG---YAQNGFGEKAVE 606



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 218/485 (44%), Gaps = 81/485 (16%)

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           +L  GL  D+ L + LV LY   G    A +    +  P+ +  +A IS     G +  A
Sbjct: 36  VLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAA 95

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           R +  R  D ++V WN++I+    ++   EAL ++  M + G+     TLASVLSAC ++
Sbjct: 96  RDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAV 155

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ G++ HG A KVG+  +  V + LL  Y+K G  +DA +LF               
Sbjct: 156 AALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFD-------------- 201

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                          + + PN+  +S+ +M+ GL+Q+G+  +AL LF  M++  +R+D  
Sbjct: 202 ---------------WMSSPNE--VSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPV 244

Query: 371 SLASVISACA-------NIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCK------ 416
           +++SV+ ACA       N++ ++ L + + A V   G DSDQ +  SL+D Y K      
Sbjct: 245 AVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDE 304

Query: 417 ---------------------------CGYDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                      C   AL + + M+ +G +P  +T++ +L++C  
Sbjct: 305 AMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIK 364

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVG 506
              V   +  FD +       P +  ++ ++  + +     + + L  +M     + D  
Sbjct: 365 ARDVPSARAMFDKIS-----KPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRT 419

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ-LSSIFATSGEWEKSSLIRDIM 565
             + IL  C   G   LG++V    ++L   N       L  +++  G+   + +I ++M
Sbjct: 420 TLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMM 479

Query: 566 REKHV 570
            E+ V
Sbjct: 480 TERDV 484


>gi|356562121|ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 921

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 193/583 (33%), Positives = 313/583 (53%), Gaps = 29/583 (4%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +++C    S  +  QLH H +K   L +   I N L+ MY++CG  T A  +F  +   +
Sbjct: 149 MKACGCLASTRLALQLHAHVIKLH-LGAQTCIQNSLVDMYIKCGAITLAETIFLNIESPS 207

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS-- 129
            F WN+MI G+ +L    ++L +F  MP+++  SWN LIS F+       +YG  I    
Sbjct: 208 LFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFS-------QYGHGIRCLS 260

Query: 130 --------HILVNGLDFDSVLGS--SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
                       N + + SVL +  S+ +L  K G    A ++L M    D F  S LI 
Sbjct: 261 TFVEMCNLGFKPNFMTYGSVLSACASISDL--KWGAHLHA-RILRMEHSLDAFLGSGLID 317

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            YA CG +  ARRVF+   + + V W   ISG        +AL LF++MR+  V+ D  T
Sbjct: 318 MYAKCGCLALARRVFNSLGEQNQVSWTCFISGVAQFGLGDDALALFNQMRQASVVLDEFT 377

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           LA++L  CS   +   G+ +HG+A K G+   V V +A++  Y++ G    A   F  + 
Sbjct: 378 LATILGVCSGQNYAASGELLHGYAIKSGMDSSVPVGNAIITMYARCGDTEKASLAFRSMP 437

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + DTI    MIT +S  G I+ A+  F  MP +++I+WNSM+    Q+G   E + L+  
Sbjct: 438 LRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVL 497

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M    ++ D  + A+ I ACA++++++LG QV + VT  GL SD  ++ S+V  Y +CG 
Sbjct: 498 MRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQ 557

Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
             +A  +F+ +    VK  +I++ A+++A    GL  +  + ++AM         I + +
Sbjct: 558 IKEARKVFDSIH---VK-NLISWNAMMAAFAQNGLGNKAIETYEAMLRTECKPDHISYVA 613

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
            + DL  RAG LN+A NLI+ MPF+ +  +W ++L  C  H D  L    A++++EL+ E
Sbjct: 614 VLSDLLGRAGLLNQAKNLIDGMPFKPNATVWGALLGACRIHHDSILAETAAKKLMELNVE 673

Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++  Y+ L++I+A SGE E  + +R +M+ K + K PGCSW +
Sbjct: 674 DSGGYVLLANIYAESGELENVADMRKLMKVKGIRKSPGCSWIE 716



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 207/486 (42%), Gaps = 44/486 (9%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            +++H+ ++++GLD    L ++L+++Y  CG  + A +V       + F  + ++  + +
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHVYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82

Query: 184 CGKMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE----DA 237
            G+M +A  +FD        SV W +MISGY  N     ++  F  M R+   +    D 
Sbjct: 83  SGRMREAENLFDEMPLIVRDSVSWTTMISGYCQNGLPGHSIKTFMSMLRDSNHDIQNCDP 142

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            +    + AC  L       Q+H H  K+ +     + ++L+D Y K G  + A  +F  
Sbjct: 143 FSYTCTMKACGCLASTRLALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETIFLN 202

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           ++       N+MI  YS      +A H+F  MP +  +SWN++I   SQ G  I  L  F
Sbjct: 203 IESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTF 262

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M  L  + +  +  SV+SACA+IS L+ G  + AR+  +    D  + + L+D Y KC
Sbjct: 263 VEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKC 322

Query: 418 GY---------------------------------DALALFNEMRNTGVKPTIITFTAIL 444
           G                                  DALALFN+MR   V     T   IL
Sbjct: 323 GCLALARRVFNSLGEQNQVSWTCFISGVAQFGLGDDALALFNQMRQASVVLDEFTLATIL 382

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
             C        G+        +  +D  +   + ++ ++AR G   +A      MP   D
Sbjct: 383 GVCSGQNYAASGE-LLHGYAIKSGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLR-D 440

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
              W++++     +GD    R+  + M E    N   +  + S +   G  E+   +  +
Sbjct: 441 TISWTAMITAFSQNGDIDRARQCFDMMPE---RNVITWNSMLSTYIQHGFSEEGMKLYVL 497

Query: 565 MREKHV 570
           MR K V
Sbjct: 498 MRSKAV 503


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 175/578 (30%), Positives = 306/578 (52%), Gaps = 44/578 (7%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +A  L+ M++RCG    A  LF  +     F  N+M+ G++K    + +L+LF+ MP+++
Sbjct: 175 VAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERD 234

Query: 103 DFSWNMLISGFAKADLA--ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
             SWNM++S  +++     AL+    + S     G+  DS   +S +    +        
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQS----KGVRLDSTTYTSSLTACARLSSLRWGK 290

Query: 161 Q----VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
           Q    V+  +   D +  SAL+  YA CG   +A+ VF+   D ++V W  +I+G++ + 
Sbjct: 291 QLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHG 350

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
             TE++ LF++MR   +  D   LA+++S C S   L  G+Q+H    K G I  V+V++
Sbjct: 351 CFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSN 410

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           +L+  Y+K      A  +F  +   D +   +MIT +S  G I  A+  F  M  K++I+
Sbjct: 411 SLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVIT 470

Query: 337 WNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           WN+M+    Q+G+  + L ++  M ++ D+R D  +  ++   CA++ + +LG+Q+  R 
Sbjct: 471 WNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRT 530

Query: 396 TIIGLDSDQIISTSLVDFYCKCGY---------------------------------DAL 422
             +GL  D  ++ +++  Y KCG                                   A+
Sbjct: 531 VKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAI 590

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            +F+++   G KP  I++ A+LS C H GLV+EG+ +FD MK  ++I P +EH+SCMVDL
Sbjct: 591 EIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDL 650

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542
             RAG L EA +LI++MP +    +W ++L  C  HG+  L    A+ + ELD  ++ +Y
Sbjct: 651 LGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSY 710

Query: 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           + ++ I+A +G+ + S+ IR +MR+K + K PG SW +
Sbjct: 711 MLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWME 748



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 151/585 (25%), Positives = 270/585 (46%), Gaps = 86/585 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL-LLFDE 66
            A  L+SC    ++   + LH   +  G L S + + N LL  Y+ CG   DA  LL  +
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVG-LASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYG 124
           +   N  + N M+ G++KLG    +++LF  MP ++  SWN L+SG+ ++   LA+LE  
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 125 KQIHSH--------------------------------ILVNGLDFDSVLGSSLVNLYGK 152
             +H                                  +   G   DS + ++LV+++ +
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVR 185

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
           CG  + A+++   +KEP  FC ++++ GY     ++ A  +FD   +   V WN M+S  
Sbjct: 186 CGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
             +    EAL +   M+  GV  D++T  S L+AC+ L  L  GKQ+H    +     D 
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDP 305

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            VASAL++ Y+K                               CG  ++AK +F ++ ++
Sbjct: 306 YVASALVELYAK-------------------------------CGCFKEAKGVFNSLHDR 334

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
           + ++W  +I G  Q+G   E+++LF  M    + +D+F+LA++IS C +   L LG Q+ 
Sbjct: 335 NNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 394

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
           +     G     ++S SL+  Y KC     A ++F  M     +  I+++T++++A    
Sbjct: 395 SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMN----EKDIVSWTSMITAHSQV 450

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG---- 506
           G + + +++FD M  +  I      ++ M+  + + G   + + +   M  E DV     
Sbjct: 451 GNIAKAREFFDGMSTKNVIT-----WNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWV 505

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIE----LDPENACAYIQLSS 547
            + ++ +GC   G   LG ++  R ++    LD   A A I + S
Sbjct: 506 TYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYS 550



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 156/397 (39%), Gaps = 102/397 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC------------- 54
           LA L+  C +   + +G+QLH   LK G + + + ++N L+ MY +C             
Sbjct: 374 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVV-VSNSLISMYAKCDNLQSAESIFRFM 432

Query: 55  ------------------GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
                             GN   A   FD M  +N  +WNAM+  +++ G +E  L+++N
Sbjct: 433 NEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYN 492

Query: 97  VMPQKNDF--SWNMLISGFAK-ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
           VM  + D    W   ++ F   ADL A + G QI    +  GL  D+ + ++++ +Y KC
Sbjct: 493 VMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKC 552

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           G    A +V + +   D    +A+I+GY+  G    A  +FD                  
Sbjct: 553 GRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFD------------------ 594

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-------KQVH------ 260
                         + + G   D  +  +VLS CS  G ++ G       K+VH      
Sbjct: 595 -------------DILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGL 641

Query: 261 ----------GHACKVGVIDDVIVASALLDTYSKRGMPSDACKL-----FSELKVYDTIL 305
                     G A  +    D+I    +  T    G    ACK+      +EL       
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 701

Query: 306 LNT--------MITVYSSCGRIEDAKHIFRTMPNKSL 334
           L++        M  +Y+  G+ +D+  I + M +K +
Sbjct: 702 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGI 738


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 174/585 (29%), Positives = 297/585 (50%), Gaps = 82/585 (14%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           F +  + + T+   N ++  Y     P +ALLLF++MP+RN  SWN +I G +K G   +
Sbjct: 45  FDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSE 104

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAK-ADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVN 148
           + ++F+ MP +N  SW  ++ G+ +  D+A  E   ++  H+   N + +  +LG  L  
Sbjct: 105 ARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAE---RLFWHMPHKNVVSWTVMLGGLLQE 161

Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
                G  + A ++ +MM E D   ++ +I GY   G++++AR +FD     + V W +M
Sbjct: 162 -----GRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAM 216

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           +SGY                 RNG ++ A  L  V+   + + +                
Sbjct: 217 VSGYA----------------RNGKVDVARKLFEVMPERNEVSW---------------- 244

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
                  +A+L  Y+  G   +A  LF  + V   ++ N MI  +   G ++ A+ +F+ 
Sbjct: 245 -------TAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKG 297

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           M  +   +W++MI    + G  +EAL LF  M +  L ++  SL SV+S C +++SL+ G
Sbjct: 298 MKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHG 357

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------------ 418
           +QV A++     D D  +++ L+  Y KCG                              
Sbjct: 358 KQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQH 417

Query: 419 ---YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
               +AL +F++M ++GV P  +TF  +LSAC + G VKEG + F+ MK +Y ++P IEH
Sbjct: 418 GLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEH 477

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y+C+VDL  RA  +NEA+ L+E+MP E D  +W ++L  C  H    L     E++ +L+
Sbjct: 478 YACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLE 537

Query: 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           P+NA  Y+ LS+++A  G W    ++R+ ++ + V KLPGCSW +
Sbjct: 538 PKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIE 582



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 176/405 (43%), Gaps = 72/405 (17%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVM--WNSMISGYISNNEDTEALLLFHKMR--- 229
           S  I+ YA  G+++ AR+VFD T      +  WN+M++ Y    +  EALLLF KM    
Sbjct: 26  SYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRN 85

Query: 230 ------------RNGVLEDASTL------ASVLSACSSL-GFLEHGKQVH---------- 260
                       +NG+L +A  +       +V+S  S + G++ +G              
Sbjct: 86  TVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPH 145

Query: 261 ----------GHACKVGVID------------DVIVASALLDTYSKRGMPSDACKLFSEL 298
                     G   + G +D            DV+  + ++  Y + G   +A  LF E+
Sbjct: 146 KNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEM 205

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              + +    M++ Y+  G+++ A+ +F  MP ++ +SW +M++G + +G   EA  LF 
Sbjct: 206 PKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLF- 264

Query: 359 NMNKLDLRMDKFSLASVISACANISSLEL-GEQVFARVTIIGL-DSDQIISTSLVDFYCK 416
                    D   +  V+     I    L GE   AR    G+ + D    ++++  Y +
Sbjct: 265 ---------DAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYER 315

Query: 417 CGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
            GY  +AL LF  M+  G+     +  ++LS C     +  G++   A   +   D ++ 
Sbjct: 316 KGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQ-VHAQLVRSEFDQDLY 374

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             S ++ ++ + G L  A  +  + P + DV MW+S++ G   HG
Sbjct: 375 VASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMITGYSQHG 418



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 125/281 (44%), Gaps = 36/281 (12%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           H G+      L   +    + + N ++  +   G    A  +F  M  R+  +W+AMI+ 
Sbjct: 253 HSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKV 312

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNM--LISGFAK-ADLAALEYGKQIHSHILVNGLDF 138
           + + G++ ++L LF  M Q+   + N   LIS  +    LA+L++GKQ+H+ ++ +  D 
Sbjct: 313 YERKGYELEALGLFRRM-QREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQ 371

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D  + S L+ +Y KCG+   A QV N     D    +++I+GY+  G             
Sbjct: 372 DLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGL------------ 419

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
                                EAL +FH M  +GV  D  T   VLSACS  G ++ G +
Sbjct: 420 -------------------GEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLE 460

Query: 259 V-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           +     CK  V   +   + L+D   +    ++A KL  ++
Sbjct: 461 LFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKM 501



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 35/192 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C +  S+  GKQ+H   ++    +  L +A+ L+ MY++CGN   A  +F+  
Sbjct: 341 LISVLSVCVSLASLDHGKQVHAQLVRSE-FDQDLYVASVLITMYVKCGNLVRAKQVFNRF 399

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------LAAL 121
           P ++   WN+MI G+ + G  E++L +F+          +M  SG    D      L+A 
Sbjct: 400 PLKDVVMWNSMITGYSQHGLGEEALNVFH----------DMCSSGVPPDDVTFIGVLSAC 449

Query: 122 EYGKQIHSHILVNGLDFDSVLG------------SSLVNLYGKCGDFNSANQVLNMMK-E 168
            Y  ++       GL+    +             + LV+L G+    N A +++  M  E
Sbjct: 450 SYSGKVK-----EGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPME 504

Query: 169 PDDFCLSALISG 180
           PD     AL+  
Sbjct: 505 PDAIVWGALLGA 516


>gi|296085749|emb|CBI29560.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 203/583 (34%), Positives = 304/583 (52%), Gaps = 49/583 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C     +  GK LH  ++K  I  ST   +N  + +Y +CG    A   F ++   
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTY-FSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N FS+NA+I  + K      + QLF+ +P+ +  S+N LIS +A     A   G  + S 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALG--LFSG 130

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP--DDFCL--SALISGYANCGK 186
           +   GLD D    S+++     C D     Q+ ++      D +    +AL++ Y   G 
Sbjct: 131 MREMGLDMDGFTLSAVIT--ACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 187 MNDARRVFDRTTDT-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++DA+RVF         V WNSMI  Y  + E ++AL LF +M R G+  D  TLASVL+
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK-RGMPSDACKLFSELKVYDTI 304
           A + L  L  G Q HG   K G   +  V S L+D YSK  G  SD  K+F E+   D +
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE-ALDLFCNMNKL 363
           L NTM++                               G SQN   +E AL+ F  M  +
Sbjct: 309 LWNTMVS-------------------------------GYSQNEEFLEDALECFRQMQGI 337

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFA----RVTIIGLDSDQIISTSLVDFYCKCG- 418
             R +  S   VISAC+N+SS   G+Q+ +    R+     + + +   S++  Y + G 
Sbjct: 338 GYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKRLFDRMAEHNTVSLNSMIAGYAQHGI 397

Query: 419 -YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
             ++L LF  M    + PT ITF ++LSAC H G V+EG  +F+ MK +++I+PE EHYS
Sbjct: 398 EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYS 457

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
           CM+DL  RAG L+EA NLI +MPF      W+S+L  C  HG+  L  K A ++++L+P 
Sbjct: 458 CMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPS 517

Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           NA  Y+ LS+++A++G WE+ + +R  MR++ V K PGCSW +
Sbjct: 518 NAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIE 560



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 205/489 (41%), Gaps = 91/489 (18%)

Query: 102 NDFSW------NMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155
           N  SW      ++L +  A+ DL+    GK +HS  + + +   +   +  + LY KCG 
Sbjct: 2   NQISWTLQRFRHLLKTCIAERDLST---GKSLHSLYIKSFIPPSTYFSNHFILLYSKCGR 58

Query: 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 215
              A +    + +P+ F  +A+I+ YA   +   A ++FD+  +   V +N++IS Y   
Sbjct: 59  LAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADC 118

Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSA-CSSLGFLEHGKQVHGHACKVGVIDDVIV 274
            E   AL LF  MR  G+  D  TL++V++A C  +G +    Q+H  A   G    V V
Sbjct: 119 GETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLI---GQLHSVAVSSGFDSYVSV 175

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            +ALL  Y K G   DA ++F  +                  G I D             
Sbjct: 176 NNALLTYYGKNGDLDDAKRVFYGM------------------GGIRDE------------ 205

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
           +SWNSMIV   Q+    +AL LF  M +  L +D F+LASV++A   +  L  G Q   +
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 395 VTIIGLDSDQIISTSLVDFYCKCG-----------------------------------Y 419
           +   G   +  + + L+D Y KCG                                    
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC- 478
           DAL  F +M+  G +P   +F  ++SAC +     +G K   ++  +   D   EH +  
Sbjct: 326 DALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG-KQIHSLALKRLFDRMAEHNTVS 384

Query: 479 ---MVDLFARAGCLNEAVNLIEQMPFEADVGMWS----SILRGCVAHGDKGLGRKVAERM 531
              M+  +A+ G   E+++L + M  E  +   S    S+L  C   G    G      M
Sbjct: 385 LNSMIAGYAQHGIEMESLHLFQWM-LERQIAPTSITFISVLSACAHTGRVEEGWNYFNMM 443

Query: 532 IE---LDPE 537
            E   ++PE
Sbjct: 444 KEKFNIEPE 452


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 191/610 (31%), Positives = 308/610 (50%), Gaps = 81/610 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN----PTDALLLFDE 66
           LL +C T  S+ +   +H   +K G+ N+   ++ RLL+  +   N    P  A+ +F+ 
Sbjct: 8   LLHNCKTLQSLRI---IHAQMIKTGLHNTNYALS-RLLEFCILSPNFDGLPY-AISVFET 62

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALE 122
           +   N   WN M  G         +++L+  M       N +++  L+   AK  L   +
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAK--LKVSK 120

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+QIH H+L  G + D  + +SL+++Y K G +  A++V +     D    +ALI+GYA
Sbjct: 121 EGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYA 180

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           + G +  A+++FD       V WN++ISGY     + EAL LF +M +  V  D ST+ +
Sbjct: 181 SRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVT 240

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           V+SAC+  G ++ G+QVH        IDD                      L S LK+  
Sbjct: 241 VVSACAQSGSIQLGRQVHS------WIDD--------------------HGLGSNLKI-- 272

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
              +N +I +YS CG +E A  +F+ + NK +ISWN+MI G +      EAL LF  M +
Sbjct: 273 ---VNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLR 329

Query: 363 LDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                +  ++ S++ ACA + +++ G    V+    I G+ +   + TSL+D Y KCG  
Sbjct: 330 SGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDI 389

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                            A  +F+ MR  G++P  ITF  +LSAC
Sbjct: 390 EAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 449

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H G++  G++ F +M   Y I P++EHY CM+DL    G   EA  +I  M  E D  +
Sbjct: 450 SHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVI 509

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W S+L+ C  HG+  LG   A+++I+++PEN  +Y+ LS+I+AT+G W + + IR ++ +
Sbjct: 510 WCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLND 569

Query: 568 KHVGKLPGCS 577
           K + K+PGCS
Sbjct: 570 KGMKKVPGCS 579


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 186/684 (27%), Positives = 320/684 (46%), Gaps = 143/684 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             ++ ++C+   +  VGK ++ + L  G   ++  +   +L M+++CG    A   F+E+
Sbjct: 193 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC-VKGSILDMFIKCGRMDIARRFFEEI 251

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQ------LFNVMP---------------------- 99
             ++ F WN M+ G+   G  +K+L+      L  V P                      
Sbjct: 252 EFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEAS 311

Query: 100 ------------QKNDFSWNMLISG-------------FAK------------------- 115
                       + N  SW  LI+G             F K                   
Sbjct: 312 KYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSA 371

Query: 116 -ADLAALEYGKQIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
             +L+ L +G++IH + I V  LD D ++G+SLV+ Y KC     A +   M+K+ D   
Sbjct: 372 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 431

Query: 174 LSALISGYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
            +A+++GYA  G   +A  +      +  +   + WN +++G+    +   AL  F +M 
Sbjct: 432 WNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMH 491

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
             G+  + +T++  L+AC  +  L+ GK++HG+  +  +     V SAL           
Sbjct: 492 SMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL----------- 540

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
                               I++YS C  +E A  +F  +  + ++ WNS+I   +Q+G 
Sbjct: 541 --------------------ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
            + ALDL   MN  ++ ++  ++ S + AC+ +++L  G+++   +   GLD+   I  S
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 640

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           L+D Y +CG                                  DA+ LF + R  G+KP 
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPN 700

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            ITFT +LSAC H GL++EG K+F  MK +Y +DP +E Y+CMVDL +RAG  NE +  I
Sbjct: 701 HITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
           E+MPFE +  +W S+L  C  H +  L    A  + EL+P+++  Y+ +++I++ +G WE
Sbjct: 761 EKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 820

Query: 557 KSSLIRDIMREKHVGKLPGCSWAD 580
            ++ IR +M+E+ V K PGCSW +
Sbjct: 821 DAAKIRCLMKERGVTKPPGCSWIE 844



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 147/602 (24%), Positives = 283/602 (47%), Gaps = 91/602 (15%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  I+  A +LQ C   +++ +G Q+H   +  G+ +    + +RLL++Y + G   DA 
Sbjct: 86  DECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGV-DVCEFLGSRLLEVYCQTGCVEDAR 144

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
            +FD+M  RN FSW A++E +  LG  E++++LF +M  +     + +     KA  +L 
Sbjct: 145 RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 204

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-------------------------- 153
               GK ++ ++L  G + +S +  S+++++ KC                          
Sbjct: 205 NYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVS 264

Query: 154 -----GDFNSANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVF-----DRTTD 199
                G+F  A + ++ MK    +PD    +A+ISGYA  G+  +A + F      +   
Sbjct: 265 GYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFK 324

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            + V W ++I+G   N  D EAL +F KM   GV  ++ T+AS +SAC++L  L HG+++
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 384

Query: 260 HGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           HG+  KV  +D D++V ++L+D Y+K      A + F  +K  D +  N M+  Y+  G 
Sbjct: 385 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGS 444

Query: 319 IEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            E+A  +   M        +I+WN ++ G +Q G    AL+ F  M+ + +  +  +++ 
Sbjct: 445 HEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISG 504

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------- 417
            ++AC  + +L+LG+++   V    ++    + ++L+  Y  C                 
Sbjct: 505 ALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRD 564

Query: 418 ----------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                             +AL L  EM  + V+   +T  + L AC     +++G++   
Sbjct: 565 VVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH- 623

Query: 462 AMKWQYHIDPEIEH----YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
               Q+ I   ++      + ++D++ R G + ++  + + MP + D+  W+ ++     
Sbjct: 624 ----QFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGM 678

Query: 518 HG 519
           HG
Sbjct: 679 HG 680



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 74/365 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD     ++  L +C    ++ +GK++H + L+  I  ST  + + L+ MY  C +   A
Sbjct: 495 MDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELST-GVGSALISMYSGCDSLEVA 553

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADL 118
             +F E+  R+   WN++I    + G    +L L   M   N + +   ++S   A + L
Sbjct: 554 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           AAL  GK+IH  I+  GLD  + + +SL+++YG+CG    + ++ ++M + D      L+
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD------LV 667

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           S                         WN MIS Y  +    +A+ LF + R  G+  +  
Sbjct: 668 S-------------------------WNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHI 702

Query: 239 TLASVLSACSSLGFLEHG--------------KQVHGHACKVGVIDDVIVASALLDTYSK 284
           T  ++LSACS  G +E G                V  +AC V ++      +  L+   K
Sbjct: 703 TFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEK 762

Query: 285 RGMPSD-----------ACKL-------------FSELKVYDTILLNTMITVYSSCGRIE 320
             MP +           AC++               EL+   +     M  +YS+ GR E
Sbjct: 763 --MPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 820

Query: 321 DAKHI 325
           DA  I
Sbjct: 821 DAAKI 825



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 123/325 (37%), Gaps = 80/325 (24%)

Query: 228 MRRNGVLEDASTL----------------ASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           + RNGVL +A+ L                AS+L  C  L  L  G QVH      GV   
Sbjct: 64  VHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVC 123

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
             + S LL+ Y + G                                +EDA+ +F  M  
Sbjct: 124 EFLGSRLLEVYCQTGC-------------------------------VEDARRMFDKMSE 152

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           +++ SW +++      G   E + LF  M    +R D F    V  AC+ + +  +G+ V
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCGY-------------------------------- 419
           +  +  IG + +  +  S++D + KCG                                 
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 272

Query: 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
             AL   ++M+ +GVKP  +T+ AI+S     G  +E  K+F  M       P +  ++ 
Sbjct: 273 KKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA 332

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEA 503
           ++    + G   EA+++  +M  E 
Sbjct: 333 LIAGSEQNGYDFEALSVFRKMVLEG 357


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 190/620 (30%), Positives = 307/620 (49%), Gaps = 88/620 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFD 65
            RL+Q C  H    VGKQLH       +L+S +P   + ++L+  Y + G+  DA  +F 
Sbjct: 7   GRLIQHCTDHLFFRVGKQLHARL----VLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFG 62

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-----------SWNMLISGFA 114
           ++PR+N FSWNA+   +         L+LF+ +   N             S   L S F+
Sbjct: 63  KIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFS 122

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            + LA     K++HS IL  GL++D                                F +
Sbjct: 123 NSGLA-----KEVHSFILRRGLEYDI-------------------------------FVV 146

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GV 233
           +ALI+ Y+ C ++  AR +FDR  +  +V WN+M++GY       E   LF  M  +  V
Sbjct: 147 NALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEV 206

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
             +A T  SVL AC+    L  G +VH    +  +  DV + +A++  Y+K G+   A +
Sbjct: 207 KPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARE 266

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF E+   D I   +MI+ Y   G +  A  +FR      L +WN++I GL QN     A
Sbjct: 267 LFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGA 326

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           +D+F  M     R +  +LAS++   ++ S+L+ G+++         D +  ++T+++D 
Sbjct: 327 VDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDS 386

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           Y KCGY                                  AL+LF EM   G++P  +TF
Sbjct: 387 YAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTF 446

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           T++L+AC H G + E  K F+ +  +Y I P +EHY+CMV + +RAG L++AV  I +MP
Sbjct: 447 TSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMP 506

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E    +W ++L G    GD  LG+ V +R+ E++PEN   Y+ ++++++ SG W+ +  
Sbjct: 507 LEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADT 566

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           IRD+M+E  + K+PG SW +
Sbjct: 567 IRDLMKEVRLKKIPGNSWIE 586



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 144/344 (41%), Gaps = 46/344 (13%)

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           S    ++  C+   F   GKQ+H       V+ D  + S L+  YSK G           
Sbjct: 4   SAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSG----------- 52

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                                I DA ++F  +P K++ SWN++ +  + +    + L LF
Sbjct: 53  --------------------SIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLF 92

Query: 358 ---CNMNKLDLRMDKFSLASVISACANI-SSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
               N N  D++ D+F++   + A A++ S+  L ++V + +   GL+ D  +  +L+ F
Sbjct: 93  SSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITF 152

Query: 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
           Y +C  D L L   M +   +   +++ A+L+     G  +E ++ F  M     + P  
Sbjct: 153 YSRC--DELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNA 210

Query: 474 EHYSCMVDLFARAGCLN---EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAER 530
                ++   A++  L    E    + +   + DV +W++++      G     R++ E 
Sbjct: 211 LTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEE 270

Query: 531 MIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           M E D    C+ I   S +   G   ++    D+ RE+   +LP
Sbjct: 271 MPEKDGITYCSMI---SGYMVHGFVNQA---MDLFREQERPRLP 308


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 181/582 (31%), Positives = 291/582 (50%), Gaps = 107/582 (18%)

Query: 45  NRLLQMYMRCG----NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           N LL M +RC     +      LF ++ + N F WN MI G +     + +++ + +M  
Sbjct: 46  NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRS 105

Query: 101 K----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
           +    N+F++  ++   A+  L  L+ G +IH+ ++  G D D  + +SLV LY K    
Sbjct: 106 EGFLPNNFTFPFVLKACAR--LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAK---- 159

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
                                      CG + DA +VFD   D + V W ++ISGYI   
Sbjct: 160 ---------------------------CGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVG 192

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
           +  EA+ +F ++    +  D+ T+  VLSAC+ LG L  G+ +H    ++G++ +V V +
Sbjct: 193 KFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGT 252

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           +L+D Y+K                               CG +E A+ +F  MP K ++S
Sbjct: 253 SLVDMYAK-------------------------------CGNMEKARSVFDGMPEKDIVS 281

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           W +MI G + NG P EA+DLF  M + +++ D +++  V+SACA + +LELGE V   V 
Sbjct: 282 WGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVD 341

Query: 397 IIGLDSDQIISTSLVDFYCKCG-------------------YDAL--------------A 423
                 + ++ T+L+D Y KCG                   ++A+               
Sbjct: 342 RNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFG 401

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
           LF ++   G+KP   TF  +L  C H GLV EG+++F++M   + + P IEHY CMVDL 
Sbjct: 402 LFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLL 461

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543
            RAG L+EA  LI  MP EA+  +W ++L  C  H D  L     +++IEL+P N+  Y+
Sbjct: 462 GRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYV 521

Query: 544 QLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW--ADGIA 583
            LS+I++ + +W++++ +R  M EK + K PGCSW   DGI 
Sbjct: 522 LLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIV 563



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 197/446 (44%), Gaps = 79/446 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     + +G ++H   +K G  +  + +   L+ +Y +CG   DA  +FD++P +
Sbjct: 118 VLKACARLLDLQLGVKIHTLVVKGG-FDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDK 176

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLAALEYGKQ 126
           N  SW A+I G++ +G   +++ +F  + + N     F+   ++S  A   L  L  G+ 
Sbjct: 177 NVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLS--ACTQLGDLNSGEW 234

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  I+  G+  +  +G+SLV++Y KCG+   A  V + M E D     A+I GYA    
Sbjct: 235 IHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYA---- 290

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                                       N    EA+ LF +M+R  V  D  T+  VLSA
Sbjct: 291 ---------------------------LNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSA 323

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ LG LE G+ V G   +   + + ++ +AL+D Y+K G  S A ++F  +K  D ++ 
Sbjct: 324 CARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVV- 382

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                                         WN++I GL+ NG    +  LF  + KL ++
Sbjct: 383 ------------------------------WNAIISGLAMNGYVKISFGLFGQVEKLGIK 412

Query: 367 MDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425
            D  +   ++  C +   ++ G + F +      L         +VD   + G     L 
Sbjct: 413 PDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAG-----LL 467

Query: 426 NE----MRNTGVKPTIITFTAILSAC 447
           +E    +RN  ++   I + A+L AC
Sbjct: 468 DEAHQLIRNMPMEANAIVWGALLGAC 493



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 173/385 (44%), Gaps = 70/385 (18%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D++ L+ ++    +    N  R +F +    +  +WN+MI G +SN+   +A+  +  MR
Sbjct: 45  DNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMR 104

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
             G L +  T   VL AC+ L  L+ G ++H    K G   DV V ++L+  Y+K G   
Sbjct: 105 SEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLE 164

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA K+F ++   + +    +I+ Y   G+       FR                      
Sbjct: 165 DAHKVFDDIPDKNVVSWTAIISGYIGVGK-------FR---------------------- 195

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
             EA+D+F  + +++L  D F++  V+SAC  +  L  GE +   +  +G+  +  + TS
Sbjct: 196 --EAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTS 253

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           LVD Y KCG                                  +A+ LF +M+   VKP 
Sbjct: 254 LVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPD 313

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAM--KWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
             T   +LSAC   G ++ G+ W   +  + ++  +P +   + ++DL+A+ G ++ A  
Sbjct: 314 CYTVVGVLSACARLGALELGE-WVSGLVDRNEFLYNPVLG--TALIDLYAKCGSMSRAWE 370

Query: 495 LIEQMPFEADVGMWSSILRGCVAHG 519
           + + M  E D  +W++I+ G   +G
Sbjct: 371 VFKGMK-EKDRVVWNAIISGLAMNG 394



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 137/298 (45%), Gaps = 46/298 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           + R+L +C     ++ G+ +H   ++ G++ +   +   L+ MY +CGN   A  +FD M
Sbjct: 216 IVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVF-VGTSLVDMYAKCGNMEKARSVFDGM 274

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGK 125
           P ++  SW AMI+G+   G  ++++ LF  M ++N       + G   A A L ALE G+
Sbjct: 275 PEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGE 334

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +   +  N   ++ VLG++L++LY KCG  + A +V   MKE D               
Sbjct: 335 WVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKD--------------- 379

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                            V+WN++ISG   N     +  LF ++ + G+  D +T   +L 
Sbjct: 380 ----------------RVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLC 423

Query: 246 ACSSLGFLEHGKQVHGHACKV----------GVIDDVIVASALLDTYSK--RGMPSDA 291
            C+  G ++ G++      +           G + D++  + LLD   +  R MP +A
Sbjct: 424 GCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEA 481



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 115/272 (42%), Gaps = 38/272 (13%)

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
           +D  LLN ++            + +F  +   ++  WN+MI GL  N    +A++ +  M
Sbjct: 44  HDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLM 103

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
                  + F+   V+ ACA +  L+LG ++   V   G D D  + TSLV  Y KCGY 
Sbjct: 104 RSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYL 163

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A+ +F  +    + P   T   +LSAC
Sbjct: 164 EDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSAC 223

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              G +  G+ W      +  +   +   + +VD++A+ G + +A ++ + MP E D+  
Sbjct: 224 TQLGDLNSGE-WIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP-EKDIVS 281

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           W ++++G   +   GL ++  +  +++  EN 
Sbjct: 282 WGAMIQG---YALNGLPKEAIDLFLQMQRENV 310


>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/567 (30%), Positives = 289/567 (50%), Gaps = 41/567 (7%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNM 108
           + G  T A  LFDEMP ++  +WNAM+  + +LG  +++L LF+ M   N     F++  
Sbjct: 17  KLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTA 76

Query: 109 LISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 168
            +S  A A L  L  G +IH+ ++V+G      +G+SL+++YGKC    SA +V   M  
Sbjct: 77  TLS--ACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSI 134

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
            ++    +L+  Y + G  + AR VFD       + WN MISGY    +    L LF KM
Sbjct: 135 MNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKM 194

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
           R + +  D  T +++++A   L    +G  +HG   K G +  V V++++L  YSK G  
Sbjct: 195 REDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCK 254

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
            D  K+F  + +   +  N MI  +   G   +A  +F+  P K+++SW SMI G ++NG
Sbjct: 255 DDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNG 314

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              +AL  F  M +  ++ D F+  +V+ AC+++++L  G+ +   +   G  +   +  
Sbjct: 315 HGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGN 374

Query: 409 SLVDFYCKCG---------------------------------YDALALFNEMRNTGVKP 435
            LV+ Y KCG                                   AL L+ EM  +G+KP
Sbjct: 375 GLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKP 434

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
             +TF  +L  C H GL+++GQ  F++M   Y +  E EH  CMVDL  R G L +A  L
Sbjct: 435 DKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQAREL 494

Query: 496 IEQMPF--EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
           +++      A+  +  ++L  C AH +  +G  + E +   +P+   +Y+ LS+++  SG
Sbjct: 495 VDEYSRTGRAETSLPEALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSG 554

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +W+++ ++R  M +  V K+PGCSW +
Sbjct: 555 QWKEAEMVRKTMTDHGVKKMPGCSWIE 581



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 134/518 (25%), Positives = 228/518 (44%), Gaps = 73/518 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     +  G ++H   +  G   S+LP+ N L+ MY +C + T A  +F+EM   N
Sbjct: 78  LSACAGLGELRRGMKIHAQVVVSGC-QSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMN 136

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--------------- 116
             SW +++  +   G  + +  +F+ MP+K + +WN++ISG+ +                
Sbjct: 137 EVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMRE 196

Query: 117 ------------------DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
                             +L    YG  +H  I+ +G      + +S+++ Y K G  + 
Sbjct: 197 DSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDD 256

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
             +V   +        +A+I  +   G  ++A  VF    + + V W SMI+GY  N   
Sbjct: 257 VMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHG 316

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            +AL  F KM  N +  D  T  +VL ACSSL  L HGK +HG     G    V V + L
Sbjct: 317 EQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGL 376

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           ++ Y+K                               CG I+ +   F+ +  K L+SWN
Sbjct: 377 VNMYAK-------------------------------CGDIQGSNTAFKEILGKDLVSWN 405

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTI 397
           +M+ GL  +G   +AL+L+  M    ++ DK +   ++  C++   +E G+ +F + V++
Sbjct: 406 AMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSV 465

Query: 398 IGLDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
            GL  +      +VD   + GY A A  L +E   TG   T +   A+L AC     V+ 
Sbjct: 466 YGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLP-EALLGACFAHSEVRM 524

Query: 456 GQKWFDAMKWQYHIDPEIE-HYSCMVDLFARAGCLNEA 492
           G    + +K     +P+ E  Y  + +L+  +G   EA
Sbjct: 525 GANLGEYLKV---FEPQKEMSYVLLSNLYCVSGQWKEA 559



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 171/366 (46%), Gaps = 14/366 (3%)

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
           F  ++ I   A  G++  ARR+FD      +V WN+M++ Y       +AL LFH MR  
Sbjct: 6   FQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIA 65

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
               D  T  + LSAC+ LG L  G ++H      G    + V ++L+D Y K    + A
Sbjct: 66  NSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSA 125

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
            ++F E+ + + +   +++  Y+S G  + A+ +F  MP K  I+WN MI G  Q G   
Sbjct: 126 RRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVE 185

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
             L LF  M +  L+ D+++ +++++A   +     G  +   +   G      +S S++
Sbjct: 186 LCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSIL 245

Query: 412 DFYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
            FY K  C  D + +F  +   G+  T +++ A++ A    G   E       + +Q   
Sbjct: 246 SFYSKLGCKDDVMKVFESI---GI-LTQVSWNAMIDAHMKIGDTHEA-----FLVFQLAP 296

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRK 526
           +  +  ++ M+  +AR G   +A++   +M     + D   + ++L  C +    G G+ 
Sbjct: 297 EKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKM 356

Query: 527 VAERMI 532
           +   +I
Sbjct: 357 IHGSII 362


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 194/618 (31%), Positives = 304/618 (49%), Gaps = 107/618 (17%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H + LK G   S   + N L+  Y +CG    A +LFDE+  R+  SWN+MI G   
Sbjct: 178 KRVHGYVLKLG-FGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTM 236

Query: 85  LGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYGKQIHSHILVNGLDFDSVL 142
            G     L+ F  M     D     L++   A A++  L  G+ +H++ +  G     + 
Sbjct: 237 NGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMF 296

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
            ++L+++Y KC                               G +N A  VF +  +T+ 
Sbjct: 297 NNTLLDMYSKC-------------------------------GNLNGANEVFVKMGETTI 325

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V W S+I+ ++      EA+ LF +M+  G+  D   + SV+ AC+    L+ G++VH H
Sbjct: 326 VSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNH 385

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
             K  +  ++ V++AL++ Y+K                               CG +E+A
Sbjct: 386 IKKNNMGSNLPVSNALMNMYAK-------------------------------CGSMEEA 414

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             IF  +P K+++SWN+MI G SQN  P EAL LF +M K  L+ D  ++A V+ ACA +
Sbjct: 415 NLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQK-QLKPDDVTMACVLPACAGL 473

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------------- 419
           ++LE G ++   +   G  SD  ++ +LVD Y KCG                        
Sbjct: 474 AALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMI 533

Query: 420 ----------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                     +A++ F +MR  G++P   +FT+IL AC H GL+KEG K FD+MK + +I
Sbjct: 534 AGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNI 593

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           +P++EHY+CMVDL  R+G L+ A   IE MP + D  +W ++L GC  H D  L  KVAE
Sbjct: 594 EPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAE 653

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP---GCSWADGIA-FN 585
            + EL+PEN   Y+ L++++A + +WE+   ++ I R    G L    GCSW +    FN
Sbjct: 654 HIFELEPENTRYYVLLANVYAEAEKWEE---VKKIQRRISKGGLKNDQGCSWIEVQGKFN 710

Query: 586 CWFL-DTMFLQLANFDEI 602
            +F  DT   Q    D +
Sbjct: 711 IFFAGDTSHPQAKMIDSL 728



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 147/573 (25%), Positives = 254/573 (44%), Gaps = 117/573 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    S+  GK++H      G+    + +  +L+ MY+ CG+      +FD +   
Sbjct: 63  VLQLCAELKSLEDGKRVHSIISSNGMAIDEV-LGAKLVFMYVNCGDLVKGRRIFDGILND 121

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
             F WN ++  + K+G+  +S+ LF  M +     + +++  ++ GFA +  A +   K+
Sbjct: 122 KIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAAS--AKVRECKR 179

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H ++L  G                    F S N V+N           +LI+ Y  CG+
Sbjct: 180 VHGYVLKLG--------------------FGSYNAVVN-----------SLIAAYFKCGE 208

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  AR +FD  +D   V WNSMISG   N      L  F +M   GV  D++TL +VL A
Sbjct: 209 VESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVA 268

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+++G L  G+ +H +  K G    V+  + LLD YSK                      
Sbjct: 269 CANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSK---------------------- 306

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG +  A  +F  M   +++SW S+I    + G   EA+ LF  M    LR
Sbjct: 307 ---------CGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLR 357

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            D +++ SV+ ACA  +SL+ G +V   +    + S+  +S +L++ Y KCG        
Sbjct: 358 PDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLI 417

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL LF +M+   +KP  +T   +L AC     +
Sbjct: 418 FSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAAL 476

Query: 454 KEGQKWFD-AMKWQYHIDPEIEHYSC-MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           ++G++     ++  Y  D    H +C +VD++ + G L  A  L + +P + D+ +W+ +
Sbjct: 477 EKGREIHGHILRKGYFSDL---HVACALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVM 532

Query: 512 LRGCVAHGDKGLGRKVAE-----RMIELDPENA 539
           + G   +G  G G++        R+  ++PE +
Sbjct: 533 IAG---YGMHGFGKEAISTFEKMRVAGIEPEES 562



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 40/284 (14%)

Query: 183 NCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           +CG           TT +  +V  N+ I  +    +   A+ L  + +R+ +  + +T  
Sbjct: 4   SCGSSVGVSATLSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSEL--ELNTYC 61

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           SVL  C+ L  LE GK+VH                      S  GM              
Sbjct: 62  SVLQLCAELKSLEDGKRVH-------------------SIISSNGMA------------I 90

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D +L   ++ +Y +CG +   + IF  + N  +  WN ++   ++ G+  E++ LF  M 
Sbjct: 91  DEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQ 150

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--Y 419
           +L +R D ++   V+   A  + +   ++V   V  +G  S   +  SL+  Y KCG   
Sbjct: 151 ELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVE 210

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
            A  LF+E+ +  V    +++ +++S C   G  + G ++F  M
Sbjct: 211 SARILFDELSDRDV----VSWNSMISGCTMNGFSRNGLEFFIQM 250



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    ++  G+++H H L+KG   S L +A  L+ MY++CG    A  LFD +
Sbjct: 463 MACVLPACAGLAALEKGREIHGHILRKGYF-SDLHVACALVDMYVKCGLLVLAQQLFDMI 521

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS 105
           P+++   W  MI G+   G  ++++  F  M      P+++ F+
Sbjct: 522 PKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFT 565


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 182/603 (30%), Positives = 293/603 (48%), Gaps = 100/603 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C  +  +  GK++H   +      +   +   ++ MY +C    DA  +FD MP R
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTG-VVNMYAKCRQIDDAYKMFDRMPER 211

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKADLAALEYGKQI 127
           +  SWN +I GF + G  +K+L+L   M    Q+ D S  ++    A AD+  L  GK I
Sbjct: 212 DLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPD-SITLVTVLPAAADVGLLMVGKSI 270

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H + +  G        + LVN+                         +AL   Y+ CG +
Sbjct: 271 HGYAIRAGF-------AKLVNIS------------------------TALADMYSKCGSV 299

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
             AR +FD     + V WNSM+ GY+ N E  +A+ +F KM   G+     T+   L AC
Sbjct: 300 ETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHAC 359

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + LG LE GK VH    ++ +  D+ V                               +N
Sbjct: 360 ADLGDLERGKFVHKFVDQLNLGSDISV-------------------------------MN 388

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           ++I++YS C R++ A  IF  +  ++ +SWN+MI+G +QNG   EAL+ F  M  L ++ 
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------Y 419
           D F++ SVI A A +S     + +   +    LD +  ++T+LVD Y KCG        +
Sbjct: 449 DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLF 508

Query: 420 D-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
           D                         AL LF++M+   V+P  IT+ +++SAC H GLV 
Sbjct: 509 DMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVD 568

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG + F +MK  Y ++P ++HY  MVDL  RAG + EA + IE MP    + ++ ++L  
Sbjct: 569 EGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGA 628

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H +  +G K A+++ EL+P+    ++ L++I+A++ +W K + +R  M +K + K P
Sbjct: 629 CKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTP 688

Query: 575 GCS 577
           GCS
Sbjct: 689 GCS 691



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 158/378 (41%), Gaps = 66/378 (17%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + L+S ++  G +N+A RVF+   D    ++++M+ GY  N+    AL    +MR + V 
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
                   +L  C     L+ GK++HG         +V   + +++ Y+K     DA K+
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F  +                               P + L+SWN++I G SQNG   +AL
Sbjct: 205 FDRM-------------------------------PERDLVSWNTIIAGFSQNGFAKKAL 233

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +L   M     R D  +L +V+ A A++  L +G+ +       G      IST+L D Y
Sbjct: 234 ELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMY 293

Query: 415 CKCG--------YD-------------------------ALALFNEMRNTGVKPTIITFT 441
            KCG        +D                         A+A+F +M   G+ PT +T  
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
             L AC   G ++ G K+      Q ++  +I   + ++ ++++   ++ A ++   +  
Sbjct: 354 EALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412

Query: 502 EADVGMWSSILRGCVAHG 519
              V  W++++ G   +G
Sbjct: 413 RTHVS-WNAMILGYAQNG 429



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 68/366 (18%), Positives = 140/366 (38%), Gaps = 72/366 (19%)

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A +L  C+S+  L    Q+     K G+ ++ +  + L+  +SK G              
Sbjct: 53  AVLLELCTSMKELH---QIIPLVIKNGLYNEHLFQTKLVSLFSKYG-------------- 95

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                             I +A  +F  + +K    +++M+ G ++N S   AL   C M
Sbjct: 96  -----------------SINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM 138

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
              D++   ++   ++  C + + L+ G+++  ++      ++    T +V+ Y KC   
Sbjct: 139 RYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQI 198

Query: 418 ------------------------------GYDALALFNEMRNTGVKPTIITFTAILSAC 447
                                            AL L   M++ G +P  IT   +L A 
Sbjct: 199 DDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAA 258

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              GL+  G K       +      +   + + D++++ G +  A  + + M  +  V  
Sbjct: 259 ADVGLLMVG-KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD-QKTVVS 316

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
           W+S++ G V +G+      V E+M+E  +DP        L +  A  G+ E+   +   +
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHAC-ADLGDLERGKFVHKFV 375

Query: 566 REKHVG 571
            + ++G
Sbjct: 376 DQLNLG 381


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 198/677 (29%), Positives = 327/677 (48%), Gaps = 135/677 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +++SC    ++ +G+ +H      G+ N    + + L++MY   G   +A   FD +
Sbjct: 144 LPYVVKSCAALGAMSLGRLVHRTARAIGLANDVY-VGSALVKMYADAGLLGNARDAFDGI 202

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
           P R+C  WN M++G +K G  + +++LF           NM  SG  + + A L      
Sbjct: 203 PERDCVLWNVMMDGCIKAGDVDGAVRLFR----------NMRASG-CEPNFATLA----- 246

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
              + V   D D + G+ L +L  KCG             EP+    + L++ YA C  +
Sbjct: 247 -CFLSVCATDADLLSGAQLHSLAVKCG------------LEPEVAVANTLLAMYAKCQCL 293

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           +DA R+F+       V WN MISG + N    EA  LF+ M+R+G   D+ TL S+L A 
Sbjct: 294 DDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPAL 353

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----------------------- 284
           + L  L+ GK+VHG+  +  V  DV + SAL+D Y K                       
Sbjct: 354 TDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGS 413

Query: 285 --------RGMPSDACKLFSEL-----------------------------KVYDTILLN 307
                    GM  +A ++F  L                             +++  +L N
Sbjct: 414 TMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRN 473

Query: 308 T----------MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                      ++ +Y+ CGR++ + +IF  M  K  ++WNSMI   SQNG P EALDLF
Sbjct: 474 AYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLF 533

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCK 416
             M    ++ +  ++++ +SACA++ ++  G+++   VTI G + +D    ++L+D Y K
Sbjct: 534 RQMCMEGIKYNNITISAALSACASLPAIYYGKEIHG-VTIKGPIKADIFAESALIDMYAK 592

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                  ++++L + M+  G KP  +TF A+
Sbjct: 593 CGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLAL 652

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           +SAC H GLV+EG + F  M  +Y I P +EH++CMVDL++R+G L++A+  I  MPF+ 
Sbjct: 653 ISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKP 712

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           D G+W ++L  C  H +  L    ++ + +LDP N+  Y+ +S+I A +G W+  S +R 
Sbjct: 713 DAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRR 772

Query: 564 IMREKHVGKLPGCSWAD 580
           +M++  + K+PG SW D
Sbjct: 773 LMKDNKILKIPGYSWVD 789



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 138/552 (25%), Positives = 232/552 (42%), Gaps = 112/552 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGIL--NSTLPIANRLLQMYMRCGNPTDALLL 63
           D L  +L+ C +   + +G Q+H   +  G L  ++ L +  RLL MY+      DA+ +
Sbjct: 33  DRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAV 92

Query: 64  FDEMPRRNCFS---WNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFA 114
           F  +PR    S   WN +I GF   G    ++  +  M      P  +  +   ++   A
Sbjct: 93  FSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCA 152

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
              L A+  G+ +H      GL  D  +GS+LV +                         
Sbjct: 153 A--LGAMSLGRLVHRTARAIGLANDVYVGSALVKM------------------------- 185

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
                 YA+ G + +AR  FD   +   V+WN M+ G I   +   A+ LF  MR +G  
Sbjct: 186 ------YADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCE 239

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            + +TLA  LS C++   L  G Q+H  A K G+  +V VA+ LL  Y+K          
Sbjct: 240 PNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAK---------- 289

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                C  ++DA  +F  MP   L++WN MI G  QNG  +EA 
Sbjct: 290 ---------------------CQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAF 328

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LF +M +   R D  +L S++ A  +++ L+ G++V   +    ++ D  + ++LVD Y
Sbjct: 329 GLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIY 388

Query: 415 CKC--------------------------GY-------DALALFNEMRNTGVKPTIITFT 441
            KC                          GY       +AL +F  +    +KP  +T  
Sbjct: 389 FKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIA 448

Query: 442 AILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           ++L  C     +  GQ+     ++  Y     +E  S ++D++A+ G L+ +  +  +M 
Sbjct: 449 SVLPGCASMAALPLGQQIHGYVLRNAYERKCYVE--SALMDMYAKCGRLDLSHYIFLKMS 506

Query: 501 FEADVGMWSSIL 512
            + D   W+S++
Sbjct: 507 -QKDEVTWNSMI 517



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 144/354 (40%), Gaps = 69/354 (19%)

Query: 177 LISGYANCGKMNDARRVFD---RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           L+  Y    +  DA  VF    R    SS+ WN +I G+ +  +   A+L + KM  +  
Sbjct: 76  LLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPA 135

Query: 234 LE--DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
               DA TL  V+ +C++LG +  G+ VH  A  +G+ +DV V SAL+  Y+  G+  +A
Sbjct: 136 APSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNA 195

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
              F  +   D +L N M+      G ++ A  +FR                        
Sbjct: 196 RDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFR------------------------ 231

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
                  NM       +  +LA  +S CA  + L  G Q+ +     GL+ +  ++ +L+
Sbjct: 232 -------NMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLL 284

Query: 412 DFY--CKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
             Y  C+C  DA  LF  M     +  ++T+  ++S C   GL  E    F  M+     
Sbjct: 285 AMYAKCQCLDDAWRLFELMP----QDDLVTWNGMISGCVQNGLFVEAFGLFYDMQ----- 335

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG-------MWSSILRGCV 516
                          R+G   +++ L+  +P   D+        +   I+R CV
Sbjct: 336 ---------------RSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCV 374



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 129/325 (39%), Gaps = 70/325 (21%)

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           +  A  L +VL  C S   L  G Q+H  A   G + D                      
Sbjct: 29  VSSADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSD---------------------- 66

Query: 294 LFSELKVYDTILLNT-MITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGS 349
                  ++ + L+T ++ +Y    R  DA  +F  +P     S + WN +I G +  G 
Sbjct: 67  -------HNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQ 119

Query: 350 PIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
              A+  +  M  +      D  +L  V+ +CA + ++ LG  V      IGL +D  + 
Sbjct: 120 HHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVG 179

Query: 408 TSLVDFYCKCG--------YD-------------------------ALALFNEMRNTGVK 434
           ++LV  Y   G        +D                         A+ LF  MR +G +
Sbjct: 180 SALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCE 239

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P   T    LS C     +  G +   ++  +  ++PE+   + ++ ++A+  CL++A  
Sbjct: 240 PNFATLACFLSVCATDADLLSGAQ-LHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWR 298

Query: 495 LIEQMPFEADVGMWSSILRGCVAHG 519
           L E MP + D+  W+ ++ GCV +G
Sbjct: 299 LFELMP-QDDLVTWNGMISGCVQNG 322


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 185/598 (30%), Positives = 301/598 (50%), Gaps = 83/598 (13%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTD---ALLLFDEMPRRNCFSWNAMI 79
           KQLH H L+ G+     P A +L   +  C   +P+    A  +FD++PR N ++WN +I
Sbjct: 47  KQLHAHMLRTGLFFDP-PSATKL---FTACALSSPSSLDYACKVFDQIPRPNLYTWNTLI 102

Query: 80  EGFMKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALEYGKQIHSHILVN 134
             F       + L +F  M  +     N +++  +I   A  ++++L  G+ IH  ++  
Sbjct: 103 RAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIK--AATEVSSLLAGQAIHGMVMKA 160

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
               D  + +SL++ Y   GD                               ++ A  VF
Sbjct: 161 SFGSDLFISNSLIHFYSSLGD-------------------------------LDSAYLVF 189

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
            +  +   V WNSMISG++      EAL LF +M+      +  T+  VLSAC+    LE
Sbjct: 190 SKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLE 249

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G+    +  + G+  ++I+++A+LD Y K G   DA +LF +++  D +   TMI  Y+
Sbjct: 250 FGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYA 309

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF--CNMNKLDLRMDKFSL 372
             G  + A+ +F  MP + + +WN++I    QNG P EAL +F    +NK + + ++ +L
Sbjct: 310 KVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNK-NTKPNEVTL 368

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------- 419
           AS ++ACA + +++LG  +   +   G+  +  I+TSL+D Y KCG+             
Sbjct: 369 ASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVER 428

Query: 420 --------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                                A+ LF++M+ T VKP  +TFT +L AC H GLV EG+ +
Sbjct: 429 RDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLF 488

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           F+ M+  Y + P  +HY+CMVD+  RAGCL EAV LIE+MP      +W ++L  C  +G
Sbjct: 489 FNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYG 548

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +  L      R++E D  N  AY+ LS+I+A +G+W+  S +R  M+   + K PGCS
Sbjct: 549 NVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCS 606



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 72/370 (19%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           + ST+  ++  C++    +H KQ+H H  + G+  D                P  A KLF
Sbjct: 29  NPSTVPILIDKCANK---KHLKQLHAHMLRTGLFFD----------------PPSATKLF 69

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
           +   +             SS   ++ A  +F  +P  +L +WN++I   + +  PI+ L 
Sbjct: 70  TACAL-------------SSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLL 116

Query: 356 LFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +F  M     R  + ++   VI A   +SSL  G+ +   V      SD  IS SL+ FY
Sbjct: 117 VFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFY 176

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
              G                                  +AL LF  M+    +P  +T  
Sbjct: 177 SSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMV 236

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            +LSAC    +  E  +W      +  ID  +   + M+D++ + G L +A  L ++M  
Sbjct: 237 GVLSACAK-RIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKME- 294

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS-SL 560
           E D+  W++++ G    GD    R+V + M     E+  A+  L S +  +G+ +++ ++
Sbjct: 295 EKDIVSWTTMIDGYAKVGDYDAARRVFDVMPR---EDITAWNALISSYQQNGKPKEALAI 351

Query: 561 IRDIMREKHV 570
            R++   K+ 
Sbjct: 352 FRELQLNKNT 361



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L +C    ++ +G  +H++  K+GI      I   L+ MY +CG+   AL +F  +
Sbjct: 368 LASTLAACAQLGAMDLGGWIHVYIKKQGI-KLNFHITTSLIDMYSKCGHLEKALEVFYSV 426

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
            RR+ F W+AMI G    GH   ++ LF+ M +
Sbjct: 427 ERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQE 459


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 186/684 (27%), Positives = 319/684 (46%), Gaps = 143/684 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             ++ ++C+   +  VGK ++ + L  G   ++  +   +L M+++CG    A   F+E+
Sbjct: 193 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC-VKGSILDMFIKCGRMDIARRFFEEI 251

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQ------LFNVMP---------------------- 99
             ++ F WN M+ G+   G  +K+L+      L  V P                      
Sbjct: 252 EFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEAS 311

Query: 100 ------------QKNDFSWNMLISG-------------FAK------------------- 115
                       + N  SW  LI+G             F K                   
Sbjct: 312 KYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSA 371

Query: 116 -ADLAALEYGKQIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
             +L+ L +G++IH + I V  LD D ++G+SLV+ Y KC     A +   M+K+ D   
Sbjct: 372 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 431

Query: 174 LSALISGYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
            +A+++GYA  G   +A  +      +  +   + WN +++G+    +   AL  F +M 
Sbjct: 432 WNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMH 491

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
             G+  + +T++  L+AC  +  L+ GK++HG+  +  +     V SAL           
Sbjct: 492 SMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL----------- 540

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
                               I++YS C  +E A  +F  +  + ++ WNS+I   +Q+G 
Sbjct: 541 --------------------ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
            + ALDL   MN  ++ ++  ++ S + AC+ +++L  G+++   +   GLD+   I  S
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 640

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           L+D Y +CG                                  DA+ LF   R  G+KP 
Sbjct: 641 LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPN 700

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            ITFT +LSAC H GL++EG K+F  MK +Y +DP +E Y+CMVDL +RAG  NE +  I
Sbjct: 701 HITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
           E+MPFE +  +W S+L  C  H +  L    A  + EL+P+++  Y+ +++I++ +G WE
Sbjct: 761 EKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 820

Query: 557 KSSLIRDIMREKHVGKLPGCSWAD 580
            ++ IR +M+E+ V K PGCSW +
Sbjct: 821 DAAKIRCLMKERGVTKPPGCSWIE 844



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 147/602 (24%), Positives = 283/602 (47%), Gaps = 91/602 (15%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  I+  A +LQ C   +++ +G Q+H   +  G+ +    + +RLL++Y + G   DA 
Sbjct: 86  DECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGV-DVCEFLGSRLLEVYCQTGCVEDAR 144

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
            +FD+M  RN FSW A++E +  LG  E++++LF +M  +     + +     KA  +L 
Sbjct: 145 RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 204

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-------------------------- 153
               GK ++ ++L  G + +S +  S+++++ KC                          
Sbjct: 205 NYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVS 264

Query: 154 -----GDFNSANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVF-----DRTTD 199
                G+F  A + ++ MK    +PD    +A+ISGYA  G+  +A + F      +   
Sbjct: 265 GYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFK 324

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            + V W ++I+G   N  D EAL +F KM   GV  ++ T+AS +SAC++L  L HG+++
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 384

Query: 260 HGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           HG+  KV  +D D++V ++L+D Y+K      A + F  +K  D +  N M+  Y+  G 
Sbjct: 385 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGS 444

Query: 319 IEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            E+A  +   M        +I+WN ++ G +Q G    AL+ F  M+ + +  +  +++ 
Sbjct: 445 HEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISG 504

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------- 417
            ++AC  + +L+LG+++   V    ++    + ++L+  Y  C                 
Sbjct: 505 ALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRD 564

Query: 418 ----------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                             +AL L  EM  + V+   +T  + L AC     +++G++   
Sbjct: 565 VVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIH- 623

Query: 462 AMKWQYHIDPEIEH----YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
               Q+ I   ++      + ++D++ R G + ++  + + MP + D+  W+ ++     
Sbjct: 624 ----QFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGM 678

Query: 518 HG 519
           HG
Sbjct: 679 HG 680



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 154/365 (42%), Gaps = 74/365 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD     ++  L +C    ++ +GK++H + L+  I  ST  + + L+ MY  C +   A
Sbjct: 495 MDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELST-GVGSALISMYSGCDSLEVA 553

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADL 118
             +F E+  R+   WN++I    + G    +L L   M   N + +   ++S   A + L
Sbjct: 554 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           AAL  GK+IH  I+  GLD  + + +SL+++YG+CG    + ++ ++M + D      L+
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD------LV 667

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           S                         WN MIS Y  +    +A+ LF   R  G+  +  
Sbjct: 668 S-------------------------WNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHI 702

Query: 239 TLASVLSACSSLGFLEHG--------------KQVHGHACKVGVIDDVIVASALLDTYSK 284
           T  ++LSACS  G +E G                V  +AC V ++      +  L+   K
Sbjct: 703 TFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEK 762

Query: 285 RGMPSD-----------ACKL-------------FSELKVYDTILLNTMITVYSSCGRIE 320
             MP +           AC++               EL+   +     M  +YS+ GR E
Sbjct: 763 --MPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 820

Query: 321 DAKHI 325
           DA  I
Sbjct: 821 DAAKI 825



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 123/325 (37%), Gaps = 80/325 (24%)

Query: 228 MRRNGVLEDASTL----------------ASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           + RNGVL +A+ L                AS+L  C  L  L  G QVH      GV   
Sbjct: 64  VHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVC 123

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
             + S LL+ Y + G                                +EDA+ +F  M  
Sbjct: 124 EFLGSRLLEVYCQTGC-------------------------------VEDARRMFDKMSE 152

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           +++ SW +++      G   E + LF  M    +R D F    V  AC+ + +  +G+ V
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCGY-------------------------------- 419
           +  +  IG + +  +  S++D + KCG                                 
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 272

Query: 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
             AL   ++M+ +GVKP  +T+ AI+S     G  +E  K+F  M       P +  ++ 
Sbjct: 273 KKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA 332

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEA 503
           ++    + G   EA+++  +M  E 
Sbjct: 333 LIAGSEQNGYDFEALSVFRKMVLEG 357


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 184/614 (29%), Positives = 313/614 (50%), Gaps = 104/614 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR-CGNPTDALLLFDE 66
            A ++++C+  +   VG+ ++   +K G L + + +   L+ M+++  G+   A  +FD+
Sbjct: 131 FAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 190

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAA 120
           MP RN  +W  MI  F +LG    ++ LF        +P +  F+++ ++S  A  +L  
Sbjct: 191 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR--FTYSSVLS--ACTELGL 246

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L  GKQ+HS ++  GL  D  +G SLV++Y KC                           
Sbjct: 247 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC--------------------------- 279

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE-DTEALLLFHKMRRNGVLEDAST 239
            A  G ++D+R+VF++  + + + W ++I+ Y+ + E D EA+ LF KM    +  +  +
Sbjct: 280 -AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFS 338

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            +SVL AC +L     G+QV+ +A K+G+     V ++L+  Y++ G             
Sbjct: 339 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG------------- 385

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                             R+EDA+  F  +  K+L+S+N+++ G ++N    EA  LF  
Sbjct: 386 ------------------RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 427

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           +    + +  F+ AS++S  A+I ++  GEQ+  R+   G  S+Q I  +L+  Y +CG 
Sbjct: 428 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 487

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             AL +F++M  TG KP  IT+ A+LSA
Sbjct: 488 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 547

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H G++ EGQK F++M  ++ I P +EHY+CMVDL  R+G L EA+  I  MP  AD  
Sbjct: 548 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 607

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C  HG+  LGR  AE ++E +P++  AYI LS++ A++G+W+    IR  M+
Sbjct: 608 VWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMK 667

Query: 567 EKHVGKLPGCSWAD 580
           E+++ K  GCSW +
Sbjct: 668 ERNLIKEAGCSWIE 681



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 145/581 (24%), Positives = 266/581 (45%), Gaps = 110/581 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMP- 68
           LL+SC    +  +GK +H   ++ G+ L+S   + N L+ +Y +CG+   A L+F+ M  
Sbjct: 32  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSV--VLNTLISLYSKCGDTETARLIFEGMGN 89

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYG 124
           +R+  SW+AM+  F     + +++  F  M +     N++ +  +I   + A+ A +  G
Sbjct: 90  KRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWV--G 147

Query: 125 KQIHSHILVNG-LDFDSVLGSSLVNLYGK-CGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           + I+  ++  G L+ D  +G  L++++ K  GD  SA +V + M E +    + +I+ +A
Sbjct: 148 EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFA 207

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             G   D                               A+ LF  M  +G + D  T +S
Sbjct: 208 QLGCARD-------------------------------AIDLFLDMELSGYVPDRFTYSS 236

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VLSAC+ LG L  GKQ+H    ++G+  DV V  +L+D Y+K       C          
Sbjct: 237 VLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAK-------C---------- 279

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS-PIEALDLFCNMN 361
                      ++ G ++D++ +F  MP  +++SW ++I    Q+G    EA++LFC M 
Sbjct: 280 -----------AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI 328

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
              +R + FS +SV+ AC N+S    GEQV++    +G+ S   +  SL+  Y + G   
Sbjct: 329 SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRME 388

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +A  LFNE+ +TG+  +  TF ++LS   
Sbjct: 389 DARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAA 448

Query: 449 HCGLVKEGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
             G + +G++     +K  Y  +  I   + ++ +++R G +  A  +  +M  + +V  
Sbjct: 449 SIGAMGKGEQIHGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQVFNEME-DRNVIS 505

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSS 547
           W+S++ G   HG      ++  +M+E   + N   Y+ + S
Sbjct: 506 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 546


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 184/614 (29%), Positives = 313/614 (50%), Gaps = 104/614 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR-CGNPTDALLLFDE 66
            A ++++C+  +   VG+ ++   +K G L + + +   L+ M+++  G+   A  +FD+
Sbjct: 149 FAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 208

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAA 120
           MP RN  +W  MI  F +LG    ++ LF        +P +  F+++ ++S  A  +L  
Sbjct: 209 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR--FTYSSVLS--ACTELGL 264

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L  GKQ+HS ++  GL  D  +G SLV++Y KC                           
Sbjct: 265 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC--------------------------- 297

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE-DTEALLLFHKMRRNGVLEDAST 239
            A  G ++D+R+VF++  + + + W ++I+ Y+ + E D EA+ LF KM    +  +  +
Sbjct: 298 -AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFS 356

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            +SVL AC +L     G+QV+ +A K+G+     V ++L+  Y++ G             
Sbjct: 357 FSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG------------- 403

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                             R+EDA+  F  +  K+L+S+N+++ G ++N    EA  LF  
Sbjct: 404 ------------------RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 445

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           +    + +  F+ AS++S  A+I ++  GEQ+  R+   G  S+Q I  +L+  Y +CG 
Sbjct: 446 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 505

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             AL +F++M  TG KP  IT+ A+LSA
Sbjct: 506 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 565

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H G++ EGQK F++M  ++ I P +EHY+CMVDL  R+G L EA+  I  MP  AD  
Sbjct: 566 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 625

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C  HG+  LGR  AE ++E +P++  AYI LS++ A++G+W+    IR  M+
Sbjct: 626 VWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMK 685

Query: 567 EKHVGKLPGCSWAD 580
           E+++ K  GCSW +
Sbjct: 686 ERNLIKEAGCSWIE 699



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 145/581 (24%), Positives = 266/581 (45%), Gaps = 110/581 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMP- 68
           LL+SC    +  +GK +H   ++ G+ L+S   + N L+ +Y +CG+   A L+F+ M  
Sbjct: 50  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSV--VLNTLISLYSKCGDTETARLIFEGMGN 107

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYG 124
           +R+  SW+AM+  F     + +++  F  M +     N++ +  +I   + A+ A +  G
Sbjct: 108 KRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWV--G 165

Query: 125 KQIHSHILVNG-LDFDSVLGSSLVNLYGK-CGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           + I+  ++  G L+ D  +G  L++++ K  GD  SA +V + M E +    + +I+ +A
Sbjct: 166 EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFA 225

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             G   D                               A+ LF  M  +G + D  T +S
Sbjct: 226 QLGCARD-------------------------------AIDLFLDMELSGYVPDRFTYSS 254

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VLSAC+ LG L  GKQ+H    ++G+  DV V  +L+D Y+K       C          
Sbjct: 255 VLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAK-------C---------- 297

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS-PIEALDLFCNMN 361
                      ++ G ++D++ +F  MP  +++SW ++I    Q+G    EA++LFC M 
Sbjct: 298 -----------AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI 346

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
              +R + FS +SV+ AC N+S    GEQV++    +G+ S   +  SL+  Y + G   
Sbjct: 347 SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRME 406

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +A  LFNE+ +TG+  +  TF ++LS   
Sbjct: 407 DARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAA 466

Query: 449 HCGLVKEGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
             G + +G++     +K  Y  +  I   + ++ +++R G +  A  +  +M  + +V  
Sbjct: 467 SIGAMGKGEQIHGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQVFNEME-DRNVIS 523

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSS 547
           W+S++ G   HG      ++  +M+E   + N   Y+ + S
Sbjct: 524 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 564


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 183/607 (30%), Positives = 307/607 (50%), Gaps = 78/607 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGIL-NSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           L+++C +   +   KQ+H   +  G++ N  +P            G+   A ++FD MP 
Sbjct: 25  LIKTCKSMAQL---KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPG 81

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEY 123
            N F WN MI+G+ ++G    ++ ++       VMP  +++++  L+  F +    A++ 
Sbjct: 82  PNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMP--DEYTYPFLLKRFTRD--TAVKC 137

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+++H HI+   L F S                             + F  +ALI  Y+ 
Sbjct: 138 GRELHDHIV--KLGFSS-----------------------------NVFVQNALIHLYSL 166

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G+++ AR VFDR++    V WN MISGY  + +  E++ LF +M R  VL  + TL SV
Sbjct: 167 SGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSV 226

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSACS L  L  GK+VH +   + +    ++ +AL+D Y+  G    A  +F  +K  D 
Sbjct: 227 LSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDV 286

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           I    ++T +++ G++  A++ F  MP +  +SW +MI G  Q     E L LF  M   
Sbjct: 287 ISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAA 346

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
           +++ D+F++ S+++ACA++ +LELGE + A +    +  D  +  +L+D Y  CG     
Sbjct: 347 NIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKA 406

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL +F++M    + P  +T   +L AC H 
Sbjct: 407 IRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHS 466

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G+V +G+K+F  M  Q+ I+P + HY CMVDL  RAG L EA  +I+ MP + +  +W S
Sbjct: 467 GMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGS 526

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H D+ +    A++++EL+PEN   Y+ L +I+A    WEK   +R +M ++ +
Sbjct: 527 LLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGI 586

Query: 571 GKLPGCS 577
            K PGCS
Sbjct: 587 KKTPGCS 593



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 143/329 (43%), Gaps = 70/329 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-- 65
           L  +L +C+    ++VGK++H  ++K   +     + N L+ MY  CG+   AL +FD  
Sbjct: 223 LVSVLSACSKLKDLNVGKRVH-RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNM 281

Query: 66  -----------------------------EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
                                        +MP R+  SW AMI+G++++   ++ L LF 
Sbjct: 282 KSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFR 341

Query: 97  VMPQKN----DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 152
            M   N    +F+   +++  A A L ALE G+ I ++I  N +  DS +G++L+++Y  
Sbjct: 342 EMQAANIKPDEFTMVSILT--ACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFN 399

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
           CG+   A ++ N M   D    +A+I G A                          I+GY
Sbjct: 400 CGNVEKAIRIFNAMPHRDKISWTAVIFGLA--------------------------INGY 433

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-ACKVGVIDD 271
                  EAL +F +M +  +  D  T   VL AC+  G ++ GK+       + G+  +
Sbjct: 434 -----GEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPN 488

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKV 300
           V     ++D   + G   +A ++   + V
Sbjct: 489 VAHYGCMVDLLGRAGHLKEAHEVIKNMPV 517



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 5/177 (2%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    ++ +G+ +  +  K  I   +  + N L+ MY  CGN   A+ +F+ M
Sbjct: 355 MVSILTACAHLGALELGEWIKAYIDKNEIKIDSF-VGNALIDMYFNCGNVEKAIRIFNAM 413

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGK 125
           P R+  SW A+I G    G+ E++L +F+ M + +     +   G   A      ++ GK
Sbjct: 414 PHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGK 473

Query: 126 QIHSHILV-NGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISG 180
           +  + +   +G++ +      +V+L G+ G    A++V+ NM  +P+     +L+  
Sbjct: 474 KFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGA 530


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 189/646 (29%), Positives = 321/646 (49%), Gaps = 115/646 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEM 67
           A LLQ+C    + + G Q+H H +K G+      + N LL +Y + G    +   +FD +
Sbjct: 122 ASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF-VGNSLLTLYFKLGTDFPETRKVFDGL 180

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             ++  SW +MI G++++G    SL+LF  M     + N F+ + +I   A ++L  L+ 
Sbjct: 181 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIK--ACSELGDLKL 238

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+  H  +L  G D + V+ S+L++++G+                              N
Sbjct: 239 GRIFHGVVLGRGFDSNYVIASALIDMHGR------------------------------N 268

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLAS 242
           C  ++DAR++FD   +  ++ W S+IS    N+   EAL  F+ M+R+ G+  D  T  +
Sbjct: 269 CA-LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGT 327

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL+AC +LG L+ GK+VH      G   +V+V S+L+D Y K                  
Sbjct: 328 VLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGK------------------ 369

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG + +++ IF  MP K+ +SW++++ G  QNG     + +F  M K
Sbjct: 370 -------------CGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK 416

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
           +DL    +   +++  CA ++++  G++V  +    G   D I+ ++LVD Y KCG    
Sbjct: 417 VDL----YCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEY 472

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +AL +FN+M   G+KP  I+F  IL AC H
Sbjct: 473 AQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSH 532

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV EG+++F +M   Y I   IEHYSCMVDL  RAG L EA  LIE   F  D  +W+
Sbjct: 533 RGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWA 592

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           ++L  C    +  +  ++A+R++EL+P+   +Y+ L++++   G W  +  IR +M+++ 
Sbjct: 593 ALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRG 652

Query: 570 VGKLPGCSWAD-----GIAFNCWFLDTMFLQLANFDEIKQHQSADF 610
           V K+PG SW +     G +F+  F +++    +NF ++++ Q A +
Sbjct: 653 VNKMPGKSWIETKNNLGSSFD--FENSLVPGESNFLDVEELQMARY 696


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 184/608 (30%), Positives = 298/608 (49%), Gaps = 98/608 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L  C     +  G QLH   +K G L   + +AN LL MY +C    DA  LF+ +
Sbjct: 245 LACFLSVCAAEADLLSGVQLHSLAVKCG-LEQEVAVANTLLSMYAKCRCLDDAWRLFELL 303

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
           PR +  +WN MI G ++ G  +++L LF  M +      ++ +     A  DL  L+ GK
Sbjct: 304 PRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGK 363

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           ++H +I+ N +  D+                               F +SAL+  Y  C 
Sbjct: 364 EVHGYIIRNCVHMDA-------------------------------FLVSALVDIYFKCR 392

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            +  AR ++D       V+ +++ISGY+ N    +AL +F  +    +  +A T+ASVL 
Sbjct: 393 DVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLP 452

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+S+  L  G+++HG+  +        V SAL+D Y+K                     
Sbjct: 453 ACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAK--------------------- 491

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     CGR++ + +IF  M  K  ++WNSMI   SQNG P EALDLF  M    +
Sbjct: 492 ----------CGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGI 541

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALAL- 424
           + +  +++S +SACA++ ++  G+++   +    + +D    ++L+D Y KCG   LAL 
Sbjct: 542 KYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALR 601

Query: 425 --------------------------------FNEMRNTGVKPTIITFTAILSACDHCGL 452
                                            + M+  G KP  +TF A++SAC H GL
Sbjct: 602 VFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGL 661

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+EG + F  M  +Y I P +EH++CMVDL++R+G L++A+  I  MPF+ D G+W ++L
Sbjct: 662 VEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALL 721

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H +  L    ++ + +LDP N+  Y+ +S+I A +G W+  S +R +M++  + K
Sbjct: 722 HACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILK 781

Query: 573 LPGCSWAD 580
           +PG SW D
Sbjct: 782 IPGYSWVD 789



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 151/545 (27%), Positives = 244/545 (44%), Gaps = 96/545 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +++SC    ++ +G+ +H      G L S + + + L++MY   G   DA   FD M
Sbjct: 144 LPYVVKSCAALGAVSLGRLVHRTARATG-LASDVYVGSALIKMYSDAGLLRDARDAFDGM 202

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
           P R+C  WN M++G++K G    +++LF           NM +SG  + + A L      
Sbjct: 203 PWRDCVLWNVMMDGYIKAGDVGGAVRLFR----------NMRVSG-CEPNFATLA----- 246

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
              + V   + D + G  L +L  KCG             E +    + L+S YA C  +
Sbjct: 247 -CFLSVCAAEADLLSGVQLHSLAVKCG------------LEQEVAVANTLLSMYAKCRCL 293

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           +DA R+F+       V WN MISG + N    EAL LF  M R+G   D+ TL S+L A 
Sbjct: 294 DDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPAL 353

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + L  L+ GK+VHG+  +  V  D  + SAL+D Y K      A  L+   +  D ++ +
Sbjct: 354 TDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGS 413

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           T+I+ Y   G  E A  +FR +              L Q   P                 
Sbjct: 414 TVISGYVLNGMSEKALQMFRYL--------------LEQCIKP----------------- 442

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
           +  ++ASV+ ACA+IS+L LG+++   V     +    + ++L+D Y KCG         
Sbjct: 443 NAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIF 502

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                    +AL LF +M   G+K   +T ++ LSAC     + 
Sbjct: 503 SKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIY 562

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            G++    +  +  I  +I   S ++D++A+ G +  A+ + E MP + +V  W+SI+  
Sbjct: 563 YGKE-IHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVS-WNSIISA 620

Query: 515 CVAHG 519
             AHG
Sbjct: 621 YGAHG 625



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 143/560 (25%), Positives = 235/560 (41%), Gaps = 112/560 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGIL--NSTLPIANRLLQMYMRCGNPTDALLL 63
           D L  LL+ C +   + +G Q+H   +  G L  ++ L +  RLL MY+      DA+ +
Sbjct: 33  DRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAV 92

Query: 64  FDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFA 114
           F  +PR    +   WN +I GF   GH   ++  +  M      P  +  +   ++   A
Sbjct: 93  FSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCA 152

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
              L A+  G+ +H      GL  D  +GS+L+ +                         
Sbjct: 153 A--LGAVSLGRLVHRTARATGLASDVYVGSALIKM------------------------- 185

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
                 Y++ G + DAR  FD       V+WN M+ GYI   +   A+ LF  MR +G  
Sbjct: 186 ------YSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCE 239

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            + +TLA  LS C++   L  G Q+H  A K G+  +V VA+ LL  Y+K     DA +L
Sbjct: 240 PNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRL 299

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F  L                               P   L++WN MI G  QNG   EAL
Sbjct: 300 FELL-------------------------------PRDDLVTWNGMISGCVQNGLLDEAL 328

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LFC+M +   R D  +L S++ A  +++ L+ G++V   +    +  D  + ++LVD Y
Sbjct: 329 GLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIY 388

Query: 415 CKC--------------------------GY-------DALALFNEMRNTGVKPTIITFT 441
            KC                          GY        AL +F  +    +KP  +T  
Sbjct: 389 FKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVA 448

Query: 442 AILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           ++L AC     +  GQ+     ++  Y     +E  S ++D++A+ G L+ +  +  +M 
Sbjct: 449 SVLPACASISALPLGQEIHGYVLRNAYEGKCYVE--SALMDMYAKCGRLDLSHYIFSKMS 506

Query: 501 FEADVGMWSSILRGCVAHGD 520
            + +V  W+S++     +G+
Sbjct: 507 LKDEV-TWNSMISSFSQNGE 525


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 183/608 (30%), Positives = 297/608 (48%), Gaps = 103/608 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + ++C   H   +GK +H   +K G++   + + + L+ MY +C     A+ LF+EMP +
Sbjct: 112 VFKACGGLHRYVLGKMIHTCLIKTGLMMDIV-VGSSLVGMYGKCNAFEKAIWLFNEMPEK 170

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +   WN +I  + + G+ + +L+ F +M     + N  +    IS  A+  L  L  G +
Sbjct: 171 DVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCAR--LLDLNRGME 228

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  ++ +G   DS + S+LV++                               Y  CG 
Sbjct: 229 IHEELINSGFLLDSFISSALVDM-------------------------------YGKCGH 257

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  A  +F++    + V WNSMISGY    +    + LF +M   GV    +TL+S++  
Sbjct: 258 LEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMV 317

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS    L  GK VHG+  +  +  DV V S+L+D Y K                      
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFK---------------------- 355

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG++E A+ IF+ +P   ++SWN MI G    G   EAL LF  M K  + 
Sbjct: 356 ---------CGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVE 406

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  +  SV++AC+ +++LE G+++   +    LD+++++  +L+D Y KCG        
Sbjct: 407 SDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSV 466

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                    Y AL LF EM  + VKP  + F AILSAC H GLV
Sbjct: 467 FKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLV 526

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMWSSIL 512
            EG  +F+ M   Y I P +EHYSC++DL  RAG L+EA  +++Q P    DV + S++ 
Sbjct: 527 DEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLF 586

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H +  LG ++A  +I+ DP+++  YI LS+++A++ +W++  ++R  M+E  + K
Sbjct: 587 SACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKK 646

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 647 NPGCSWIE 654



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 146/556 (26%), Positives = 238/556 (42%), Gaps = 104/556 (18%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MDTR   L  LL++C    S+  GK +H   +  G+ N    +   L+  Y+ C     A
Sbjct: 1   MDTR--KLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIF-LCKTLINQYLSCHLYDHA 57

Query: 61  LLLFDEMPRRNCFS-WNAMIEGFMKLGHKEKSLQLFNVM---PQKNDFSWNMLISGFAKA 116
             +FD M      S WN ++ G+ K     ++L+LF  +   P     S+       A  
Sbjct: 58  KCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACG 117

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            L     GK IH+ ++  GL  D V+GSSLV +YGKC  F  A  + N M E D  C + 
Sbjct: 118 GLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNT 177

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           +IS Y   G   D                               AL  F  MRR G   +
Sbjct: 178 VISCYYQSGNFKD-------------------------------ALEYFGLMRRFGFEPN 206

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           + T+ + +S+C+ L  L  G ++H      G + D  ++SAL+D Y K G          
Sbjct: 207 SVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCG---------- 256

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                                 +E A  IF  MP K++++WNSMI G    G  I  + L
Sbjct: 257 ---------------------HLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQL 295

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    ++    +L+S+I  C+  + L  G+ V        +  D  +++SL+D Y K
Sbjct: 296 FKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFK 355

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                 ++AL LF+EMR + V+   ITFT++
Sbjct: 356 CGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSV 415

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L+AC     +++G++  + +  +  +D        ++D++A+ G ++EA ++ + +P + 
Sbjct: 416 LTACSQLAALEKGKEIHNLI-IEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KR 473

Query: 504 DVGMWSSILRGCVAHG 519
           D+  W+S++    +HG
Sbjct: 474 DLVSWTSMITAYGSHG 489


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  302 bits (774), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 186/605 (30%), Positives = 296/605 (48%), Gaps = 98/605 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C     + VGK++H   +K G  +  L     L  MY +C    +A  +FD MP R
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSG-FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER 199

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYGKQIH 128
           +  SWN ++ G+ + G    +L++   M ++N   S+  ++S   A + L  +  GK+IH
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIH 259

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            + + +G D       SLVN+                         +AL+  YA CG + 
Sbjct: 260 GYAMRSGFD-------SLVNIS------------------------TALVDMYAKCGSLE 288

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR++FD   + + V WNSMI  Y+ N    EA+L+F KM   GV     ++   L AC+
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            LG LE G+ +H  + ++G+  +V V                               +N+
Sbjct: 349 DLGDLERGRFIHKLSVELGLDRNVSV-------------------------------VNS 377

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +I++Y  C  ++ A  +F  + +++L+SWN+MI+G +QNG PI+AL+ F  M    ++ D
Sbjct: 378 LISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPD 437

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD 420
            F+  SVI+A A +S     + +   V    LD +  ++T+LVD Y KCG        +D
Sbjct: 438 TFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFD 497

Query: 421 -------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                    AL LF EM+   +KP  +TF +++SAC H GLV+ 
Sbjct: 498 MMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEA 557

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G K F  MK  Y I+  ++HY  MVDL  RAG LNEA + I QMP +  V ++ ++L  C
Sbjct: 558 GLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             H +     K AER+ EL+P++   ++ L++I+  +  WEK   +R  M  + + K PG
Sbjct: 618 QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677

Query: 576 CSWAD 580
           CS  +
Sbjct: 678 CSMVE 682



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 147/604 (24%), Positives = 259/604 (42%), Gaps = 118/604 (19%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C++   +   +Q+     K G+         +L+ ++ R G+  +A  +F+ + 
Sbjct: 41  ALLLERCSSLKEL---RQILPLVFKNGLYQEHF-FQTKLVSLFCRYGSVDEAARVFEPID 96

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALE 122
            +    ++ M++GF K+   +K+LQ F      +V P   +F++ + + G    D A L 
Sbjct: 97  SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCG----DEAELR 152

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            GK+IH  ++ +G   D    + L N+Y KC   N A +V + M E D      L+S   
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD------LVS--- 203

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
                                 WN++++GY  N     AL +   M    +     T+ S
Sbjct: 204 ----------------------WNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVS 241

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL A S+L  +  GK++HG+A + G    V +++AL+D Y+K                  
Sbjct: 242 VLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK------------------ 283

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG +E A+ +F  M  ++++SWNSMI    QN +P EA+ +F  M  
Sbjct: 284 -------------CGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD 330

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
             ++    S+   + ACA++  LE G  +      +GLD +  +  SL+  YCKC     
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390

Query: 418 ---------------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                G+       DAL  F++MR+  VKP   T+ ++++A   
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
             +     KW   +  +  +D  +   + +VD++A+ G +  A  LI  M  E  V  W+
Sbjct: 451 LSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWN 508

Query: 510 SILRGCVAHGDKGLGRKVAERMIELD----PENACAYIQLSSIFATSGEWEKSSLIRDIM 565
           +++ G   +G  G G+   E   E+       N   ++ + S  + SG  E       +M
Sbjct: 509 AMIDG---YGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMM 565

Query: 566 REKH 569
           +E +
Sbjct: 566 KENY 569


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 192/623 (30%), Positives = 311/623 (49%), Gaps = 111/623 (17%)

Query: 10  RLLQ--SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           RL+Q  SC  H      K +H   L+ G+   T  + N++L+     GN   +  + D+ 
Sbjct: 15  RLIQGFSCLKHL-----KHIHAALLRLGLDEDTY-LLNKVLRFSFNFGNTNYSFRILDQT 68

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              N F +N MI G +     ++S+++++ M ++    + F++  ++   A+  +   E 
Sbjct: 69  KEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACAR--VLDSEL 126

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G ++HS ++  G + D+ +  SL+NLY K                               
Sbjct: 127 GVKMHSLVVKAGCEADAFVKISLINLYTK------------------------------- 155

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG +++A +VFD   D +   W + ISGY+   +  EA+ +F ++   G+  D+ +L  V
Sbjct: 156 CGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEV 215

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSAC   G L  G+ +  +  + G++ +V VA+AL+D Y K                   
Sbjct: 216 LSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGK------------------- 256

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       CG +E A+ +F  M  K+++SW+SMI G + NG P EALDLF  M   
Sbjct: 257 ------------CGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNE 304

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            L+ D +++  V+ +CA + +LELG+     +       + ++ T+L+D Y KCG     
Sbjct: 305 GLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRA 364

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        DAL LF +M  +G+KP   TF  +L AC H 
Sbjct: 365 WEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHA 424

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG+++F++M+  + + PEIEHY CMVDL  RAGCL+EA  LI+ MP EA+  +W +
Sbjct: 425 GLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGA 484

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L GC  H D  L   V +++I L+P ++  Y+ LS+I+A S +WE+++ IR IM E+ V
Sbjct: 485 LLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGV 544

Query: 571 GKLPGCSW--ADGIAFNCWFLDT 591
            K+PG SW   DG+       DT
Sbjct: 545 KKIPGYSWIEVDGVVHQFLVGDT 567


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  302 bits (773), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 184/611 (30%), Positives = 296/611 (48%), Gaps = 106/611 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   +++C     +  G+Q+H H LK     S L + N L+ MY + G   D  +LF+ +
Sbjct: 138 LGSAVRACTELGDVGTGRQVHAHALKSE-RGSDLIVQNALVTMYSKNGLVDDGFMLFERI 196

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGF-AKADLAAL 121
             ++  SW ++I GF + G + ++LQ+F  M        N+F +    S F A   + + 
Sbjct: 197 KDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFG---SAFRACGAVGSW 253

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           EYG+QIH   +   LD D  +G SL ++Y +C + +S                       
Sbjct: 254 EYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDS----------------------- 290

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
                   AR  F R      V WNS+++ Y      +EAL+LF +MR +G+  D  T+ 
Sbjct: 291 --------ARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVR 342

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            +L AC     L HG+ +H +  K+G+  DV V                           
Sbjct: 343 GLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVC-------------------------- 376

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                N+++++Y+ C  +  A  +F  + ++ +++WNS++   +Q+  P E L LF  +N
Sbjct: 377 -----NSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLN 431

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
           K +  +D+ SL +V+SA A +   E+ +QV A     GL  D+++S +L+D Y KCG   
Sbjct: 432 KSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLD 491

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A  LF+ MR+ G++P  +TF  +L+AC
Sbjct: 492 DAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTAC 551

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              G V EG  ++  M+ +Y I P  EH SC+VDL ARAG L EA N I+QMPFE D+ M
Sbjct: 552 SRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIM 611

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L     H D  +G++ AE ++ +DP ++ AY+ L +I+A SG W + + ++  MR 
Sbjct: 612 WKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRT 671

Query: 568 KHVGKLPGCSW 578
             V K PG SW
Sbjct: 672 SGVKKSPGKSW 682



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 170/396 (42%), Gaps = 69/396 (17%)

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V W S+I+ ++ N    +AL LF  M R+G   D   L S + AC+ LG +  G+QVH H
Sbjct: 101 VSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAH 160

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           A K     D+IV +AL+  YSK G+  D   LF  +K  D I                  
Sbjct: 161 ALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLI------------------ 202

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACAN 381
                        SW S+I G +Q G  +EAL +F  M  +     ++F   S   AC  
Sbjct: 203 -------------SWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGA 249

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------- 418
           + S E GEQ+        LD D  +  SL D Y +C                        
Sbjct: 250 VGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSI 309

Query: 419 ----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
                      +AL LF+EMR++G++P  IT   +L AC     +  G +   +   +  
Sbjct: 310 VNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHG-RLIHSYLVKLG 368

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
           +D ++   + ++ ++AR   L+ A+++  ++  + DV  W+SIL  C  H       K+ 
Sbjct: 369 LDGDVSVCNSLLSMYARCSDLSSAMDVFHEIK-DQDVVTWNSILTACAQHNHPEEVLKLF 427

Query: 529 ERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
             + + +P  +   I L+++ + S E     +++ +
Sbjct: 428 SLLNKSEP--SLDRISLNNVLSASAELGYFEMVKQV 461



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 122/313 (38%), Gaps = 77/313 (24%)

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A+++SACS L  L  G++VH H          +VAS+           S   +L      
Sbjct: 48  AALVSACSRLRSLPQGRRVHRH----------LVASS---------SSSPDAQLAG---- 84

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            +T+L N +IT+Y                  ++ +SW S+I    QNG   +AL LF +M
Sbjct: 85  -NTVLGNHLITMY-----------------GRNPVSWASVIAAHVQNGRAGDALGLFSSM 126

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            +     D+F+L S + AC  +  +  G QV A        SD I+  +LV  Y K G  
Sbjct: 127 LRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLV 186

Query: 419 -------------------------------YDALALFNEMRNTGV-KPTIITFTAILSA 446
                                           +AL +F EM   G   P    F +   A
Sbjct: 187 DDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRA 246

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C   G  + G++    +  +Y +D ++     + D++AR   L+ A     ++    D+ 
Sbjct: 247 CGAVGSWEYGEQ-IHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIE-APDLV 304

Query: 507 MWSSILRGCVAHG 519
            W+SI+      G
Sbjct: 305 SWNSIVNAYSVEG 317


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  302 bits (773), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 184/611 (30%), Positives = 296/611 (48%), Gaps = 106/611 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   +++C     +  G+Q+H H LK     S L + N L+ MY + G   D  +LF+ +
Sbjct: 155 LGSAVRACTELGDVGTGRQVHAHALKSE-RGSDLIVQNALVTMYSKNGLVDDGFMLFERI 213

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGF-AKADLAAL 121
             ++  SW ++I GF + G + ++LQ+F  M        N+F +    S F A   + + 
Sbjct: 214 KDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFG---SAFRACGAVGSW 270

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           EYG+QIH   +   LD D  +G SL ++Y +C + +S                       
Sbjct: 271 EYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDS----------------------- 307

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
                   AR  F R      V WNS+++ Y      +EAL+LF +MR +G+  D  T+ 
Sbjct: 308 --------ARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVR 359

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            +L AC     L HG+ +H +  K+G+  DV V                           
Sbjct: 360 GLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVC-------------------------- 393

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                N+++++Y+ C  +  A  +F  + ++ +++WNS++   +Q+  P E L LF  +N
Sbjct: 394 -----NSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLN 448

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
           K +  +D+ SL +V+SA A +   E+ +QV A     GL  D+++S +L+D Y KCG   
Sbjct: 449 KSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLD 508

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A  LF+ MR+ G++P  +TF  +L+AC
Sbjct: 509 DAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTAC 568

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              G V EG  ++  M+ +Y I P  EH SC+VDL ARAG L EA N I+QMPFE D+ M
Sbjct: 569 SRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIM 628

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L     H D  +G++ AE ++ +DP ++ AY+ L +I+A SG W + + ++  MR 
Sbjct: 629 WKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRT 688

Query: 568 KHVGKLPGCSW 578
             V K PG SW
Sbjct: 689 SGVKKSPGKSW 699



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 205/488 (42%), Gaps = 107/488 (21%)

Query: 118 LAALEYGKQIHSHILVNG-------LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 170
           L +L  G+++H H++ +        L  ++VLG+ L+ +YG+C               PD
Sbjct: 57  LRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCA-------------APD 103

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
                              AR+VFD     + V W S+I+ ++ N    +AL LF  M R
Sbjct: 104 S------------------ARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLR 145

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
           +G   D   L S + AC+ LG +  G+QVH HA K     D+IV +AL+  YSK G+  D
Sbjct: 146 SGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDD 205

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
              LF  +K  D I                               SW S+I G +Q G  
Sbjct: 206 GFMLFERIKDKDLI-------------------------------SWGSIIAGFAQQGFE 234

Query: 351 IEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           +EAL +F  M  +     ++F   S   AC  + S E GEQ+        LD D  +  S
Sbjct: 235 MEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCS 294

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           L D Y +C                                   +AL LF+EMR++G++P 
Sbjct: 295 LSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPD 354

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            IT   +L AC     +  G +   +   +  +D ++   + ++ ++AR   L+ A+++ 
Sbjct: 355 GITVRGLLCACVGRDALYHG-RLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVF 413

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
            ++  + DV  W+SIL  C  H       K+   + + +P  +   I L+++ + S E  
Sbjct: 414 HEIK-DQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEP--SLDRISLNNVLSASAELG 470

Query: 557 KSSLIRDI 564
              +++ +
Sbjct: 471 YFEMVKQV 478



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 130/313 (41%), Gaps = 60/313 (19%)

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A+++SACS L  L  G++VH H          +VAS+           S   +L      
Sbjct: 48  AALVSACSRLRSLPQGRRVHRH----------LVASS---------SSSPDAQLAG---- 84

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            +T+L N +IT+Y  C   + A+ +F  MP ++ +SW S+I    QNG   +AL LF +M
Sbjct: 85  -NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSM 143

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            +     D+F+L S + AC  +  +  G QV A        SD I+  +LV  Y K G  
Sbjct: 144 LRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLV 203

Query: 419 -------------------------------YDALALFNEMRNTGV-KPTIITFTAILSA 446
                                           +AL +F EM   G   P    F +   A
Sbjct: 204 DDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRA 263

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C   G  + G++    +  +Y +D ++     + D++AR   L+ A     ++    D+ 
Sbjct: 264 CGAVGSWEYGEQ-IHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIE-APDLV 321

Query: 507 MWSSILRGCVAHG 519
            W+SI+      G
Sbjct: 322 SWNSIVNAYSVEG 334


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  302 bits (773), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 303/615 (49%), Gaps = 105/615 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L+ C     +   + +H + +K G L   + ++  L+ +Y +CG   DA LLFD M
Sbjct: 186 LAPVLKLCLNSGCLWAAEGVHGYAIKIG-LEWDVFVSGALVNIYSKCGRMRDARLLFDWM 244

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             R+   WN M++G+++LG ++++ QLF+   +     ++FS  ++++G   A    LE 
Sbjct: 245 RERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLEL 304

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H   + +GLD D  + +SLVN+Y K G    A +V N MK  D      LIS    
Sbjct: 305 GKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD------LIS---- 354

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                                WNSMIS    ++ + E++ LF  +   G+  D  TLAS+
Sbjct: 355 ---------------------WNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASI 393

Query: 244 L-----SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
                  AC  L  L+ GKQ+H HA K G   D+ V S +LD Y K              
Sbjct: 394 TLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIK-------------- 439

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            CG + +A  +F  +     ++W SMI G   NG+  +AL ++ 
Sbjct: 440 -----------------CGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 482

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M +  +  D+++ A++I A + +++LE G Q+ A V  +   SD  + TSLVD Y KCG
Sbjct: 483 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCG 542

Query: 419 ---------------------------------YDALALFNEMRNTGVKPTIITFTAILS 445
                                             +A+ LF  M++ G++P  ++F  ILS
Sbjct: 543 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 602

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GL  E  ++  +M   Y I+PEIEHYSC+VD   RAG + EA  +IE MPF+A  
Sbjct: 603 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 662

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +  ++L  C   GD   G++VA R+  L+P ++ AY+ LS+I+A +  W+  +  R +M
Sbjct: 663 SINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMM 722

Query: 566 REKHVGKLPGCSWAD 580
           + K+V K PG SW D
Sbjct: 723 KRKNVKKDPGFSWID 737



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 143/558 (25%), Positives = 251/558 (44%), Gaps = 114/558 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++  + H++ +GK  H   +  G       ++N LL MY +CG+ + A  +FD  P R
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHF-LSNNLLTMYSKCGSLSSARQVFDTTPER 141

Query: 71  NCFSWNAMIEGFMKL-----GHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEY 123
           +  +WNA++  +        G+ ++ L LF ++      +  M ++   K  L    L  
Sbjct: 142 DLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 201

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            + +H + +  GL++D  +  +LVN+Y KCG    A  + + M+E D             
Sbjct: 202 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERD------------- 248

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                              V+WN M+ GY+    + EA  LF +  R+G+  D  ++  +
Sbjct: 249 ------------------VVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLI 290

Query: 244 LSACSSLGF--LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           L+ C   G   LE GKQVHG A K G+  DV VA++L++ YSK G    A ++F+++K  
Sbjct: 291 LNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHL 350

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D                               LISWNSMI   +Q+    E+++LF ++ 
Sbjct: 351 D-------------------------------LISWNSMISSCAQSSLEEESVNLFIDLL 379

Query: 362 KLDLRMDKFSLASVI-----SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
              L+ D F+LAS+       AC  +  L+ G+Q+ A     G DSD  +++ ++D Y K
Sbjct: 380 HEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIK 439

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                   AL +++ MR + V P   TF  +
Sbjct: 440 CGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATL 499

Query: 444 LSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           + A      +++G++   + +K     DP +   + +VD++A+ G + +A  L ++M   
Sbjct: 500 IKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR 557

Query: 503 ADVGMWSSILRGCVAHGD 520
            ++ +W+++L G   HG+
Sbjct: 558 -NIALWNAMLVGLAQHGN 574



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 192/428 (44%), Gaps = 82/428 (19%)

Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
           L GKC    +  +++      D F  + L++ Y+ CG ++ AR+VFD T +   V WN++
Sbjct: 94  LLGKC----THARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAI 149

Query: 209 ISGYISNNEDT-----EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
           +  Y ++ +       E L LF  +R +       TLA VL  C + G L   + VHG+A
Sbjct: 150 LGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYA 209

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
            K+G+  DV V+ AL++ YSK G   DA  LF  ++  D +L                  
Sbjct: 210 IKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVL------------------ 251

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC--AN 381
                        WN M+ G  Q G   EA  LF   ++  LR D+FS+  +++ C  A 
Sbjct: 252 -------------WNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAG 298

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK--CGYDALALFNEMR---------- 429
              LELG+QV       GLDSD  ++ SLV+ Y K  C Y A  +FN+M+          
Sbjct: 299 TDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSM 358

Query: 430 ---------------------NTGVKPTIITFTAIL--SACDHCG---LVKEGQKWFDAM 463
                                + G+KP   T  +I   +A   CG   L+ +G++   A 
Sbjct: 359 ISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQ-IHAH 417

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
             +   D ++   S ++D++ + G +  A  +   +    DV  W+S++ GCV +G++  
Sbjct: 418 AIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA-WTSMISGCVDNGNEDQ 476

Query: 524 GRKVAERM 531
             ++  RM
Sbjct: 477 ALRIYHRM 484


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  302 bits (773), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 306/605 (50%), Gaps = 46/605 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C T  S+   K +H   L +  + S+  + N+LL++Y R G    A  +FDE+ + 
Sbjct: 8   IIHNCKTLKSL---KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQP 64

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           N + W ++I G+++    +++  LF  M ++     N  IS   KA   L   + G+ ++
Sbjct: 65  NAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVY 124

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
             +L  G  FD ++ +S+++L+ +C   ++A Q  + M E D    + +ISGY N  +++
Sbjct: 125 GFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVD 184

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR+ FDR  + + V W SMI GY+   +  EA +LF  M     ++D ++   ++S   
Sbjct: 185 IARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMP----VKDLASWNVMVSGYM 240

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            +G   + + + G       I D    + ++  + K G    A   F  +   + I    
Sbjct: 241 DIGDCVNARIIFGKM----PIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGI 296

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           M+  Y   G    A+ +F  MP K+L++W++MI G ++NG P++AL+LF    + D++ D
Sbjct: 297 MLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPD 356

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
           +  +  +ISAC+ +  ++  E +        L SD  + TSL+D Y KCG          
Sbjct: 357 ETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFE 416

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   DA+ LF++M+   +KP  +TF  +L+AC+H GLV E
Sbjct: 417 MAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDE 476

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G+K+F  M  ++ I P  +HY+C+VDL  R GCL EA NLI  MP      +W ++L  C
Sbjct: 477 GRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAAC 536

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             H +  L    A  + +++P+N+  YI LS+I+A +G W   + +R  +RE  V K  G
Sbjct: 537 RVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRG 596

Query: 576 CSWAD 580
            SW +
Sbjct: 597 SSWIE 601


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 193/618 (31%), Positives = 309/618 (50%), Gaps = 119/618 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPR 69
           ++++C+    + VG+      +K G   S + +   L+ M+++  N   +A  +FD+M  
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF------------AKAD 117
            N  +W  MI   M++G   ++++ F           +M++SGF            A A+
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFF----------LDMVLSGFESDKFTLSSVFSACAE 281

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L  L  GKQ+HS  + +GL  D  +  SLV++Y KC    SA+                 
Sbjct: 282 LENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKC----SAD----------------- 318

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN-NEDTEALLLFHKMRRNGVLE- 235
                  G ++D R+VFDR  D S + W ++I+GY+ N N  TEA+ LF +M   G +E 
Sbjct: 319 -------GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEP 371

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           +  T +S   AC +L     GKQV G A K G+  +  VA                    
Sbjct: 372 NHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA-------------------- 411

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                      N++I+++    R+EDA+  F ++  K+L+S+N+ + G  +N +  +A  
Sbjct: 412 -----------NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           L   + + +L +  F+ AS++S  AN+ S+  GEQ+ ++V  +GL  +Q +  +L+  Y 
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYS 520

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                    L  FN+M   GVKP  +T+ A
Sbjct: 521 KCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVA 580

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           ILSAC H GLV EG + F++M   + I P++EHY+CMVDL  RAG L +A   I  MPF+
Sbjct: 581 ILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQ 640

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
           ADV +W + L  C  H +  LG+  A +++ELDP    AYIQLS+I+A +G+WE+S+ +R
Sbjct: 641 ADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMR 700

Query: 563 DIMREKHVGKLPGCSWAD 580
             M+E+++ K  GCSW +
Sbjct: 701 RKMKERNLVKEGGCSWIE 718



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 121/511 (23%), Positives = 222/511 (43%), Gaps = 98/511 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---GNPTDALLLF 64
           L+ +  +C    ++ +GKQLH   ++ G+++    +   L+ MY +C   G+  D   +F
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRKVF 328

Query: 65  DEMPRRNCFSWNAMIEGFMK-LGHKEKSLQLFNVM-----PQKNDFSWNMLISGF-AKAD 117
           D M   +  SW A+I G+MK      +++ LF+ M      + N F+++   S F A  +
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFS---SAFKACGN 385

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L+    GKQ+       GL  +S +                AN V++M  + D       
Sbjct: 386 LSDPRVGKQVLGQAFKRGLASNSSV----------------ANSVISMFVKSD------- 422

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                   +M DA+R F+  ++ + V +N+ + G   N    +A  L  ++    +   A
Sbjct: 423 --------RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSA 474

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T AS+LS  +++G +  G+Q+H    K+G+  +  V +AL+  YSK             
Sbjct: 475 FTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSK------------- 521

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                             CG I+ A  +F  M N+++ISW SMI G +++G  I  L+ F
Sbjct: 522 ------------------CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETF 563

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS------LV 411
             M +  ++ ++ +  +++SAC+++  +  G + F       +  D  I         +V
Sbjct: 564 NQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFN-----SMYEDHKIKPKMEHYACMV 618

Query: 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
           D  C+ G   DA    N M     +  ++ +   L AC      + G+    A +    +
Sbjct: 619 DLLCRAGLLTDAFEFINTM---PFQADVLVWRTFLGACRVHSNTELGKL---AARKILEL 672

Query: 470 DP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           DP E   Y  + +++A AG   E+  +  +M
Sbjct: 673 DPNEPAAYIQLSNIYACAGKWEESTEMRRKM 703



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 155/347 (44%), Gaps = 50/347 (14%)

Query: 139 DSVLGSSLVNLYGKCGDFNSAN----QVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           DSV  SSL+    +  DF        +++    EPD    ++LIS Y+  G    A  VF
Sbjct: 61  DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120

Query: 195 D---RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
           +   R      V W++M++ Y +N  + +A+ +F +    G++ +     +V+ ACS+  
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSD 180

Query: 252 FLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
           F+  G+   G   K G  + DV V  +L+D + K                          
Sbjct: 181 FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVK-------------------------- 214

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                    E+A  +F  M   ++++W  MI    Q G P EA+  F +M       DKF
Sbjct: 215 ----GENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKF 270

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA-----LALF 425
           +L+SV SACA + +L LG+Q+ +     GL  D  +  SLVD Y KC  D        +F
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVF 328

Query: 426 NEMRNTGVKPTIITFTAILSA-CDHCGLVKEGQKWFDAMKWQYHIDP 471
           + M +     +++++TA+++    +C L  E    F  M  Q H++P
Sbjct: 329 DRMEDH----SVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEP 371



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 44/248 (17%)

Query: 351 IEALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           + ALDL   M +  +R MD  + +S++ +C       LG+ V AR+    ++ D ++  S
Sbjct: 46  VSALDL---MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNS 102

Query: 410 LVDFYCKCG------------------------------------YDALALFNEMRNTGV 433
           L+  Y K G                                     DA+ +F E    G+
Sbjct: 103 LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL 162

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA-GCLNEA 492
            P    +TA++ AC +   V  G+     +    H + ++     ++D+F +       A
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENA 222

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
             + ++M  E +V  W+ ++  C+  G      +    M+    E+      LSS+F+  
Sbjct: 223 YKVFDKMS-ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFES--DKFTLSSVFSAC 279

Query: 553 GEWEKSSL 560
            E E  SL
Sbjct: 280 AELENLSL 287



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 7/103 (6%)

Query: 486 AGCLNEAVNLIEQMPFEA----DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NAC 540
           AG L  AV+ ++ M  +     D   +SS+L+ C+   D  LG+ V  R+IE D E ++ 
Sbjct: 39  AGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV 98

Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIA 583
            Y  L S+++ SG+  K+  + + MR    GK    SW+  +A
Sbjct: 99  LYNSLISLYSKSGDSAKAEDVFETMR--RFGKRDVVSWSAMMA 139


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  301 bits (772), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 184/613 (30%), Positives = 304/613 (49%), Gaps = 88/613 (14%)

Query: 10  RLLQS----CNTHHSIHVGKQLHLHFLKKGILNSTLP---IA--NRLLQMYMRCGNPTDA 60
           R++Q+     NT      G+   +H  +K   N+ LP   IA  N ++  Y     P DA
Sbjct: 12  RMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDA 71

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA 120
           LLLFD+MP+RN  S+N MI G++K G    + ++F+VMP++N  SW  ++ G+ +  +  
Sbjct: 72  LLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVE 131

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
            E  K        N + +  ++G  L     K    + A ++ +M+ E D   ++ +I G
Sbjct: 132 -EAEKLFWEMPRRNVVSWTVMIGGLL-----KESRIDDAKKLFDMIPEKDVVVVTNMIGG 185

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y   G++++AR +FD     +   W +M+SGY                 +NG ++ A  L
Sbjct: 186 YCQVGRLDEARELFDEMKVRNVFTWTTMVSGYA----------------KNGRVDVARKL 229

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
             V+   + + +                       +A+L  Y++ G   +A +LF  + V
Sbjct: 230 FEVMPERNEVSW-----------------------TAMLMGYTQSGRMKEAFELFEAMPV 266

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
              +  N MI  +   G +  A+ +F  M  +   +WN+MI    + G  +EAL LF  M
Sbjct: 267 KWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARM 326

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            +  + ++  S+ SV+S CA+++SL+ G QV AR+     D D  +++ L+  Y KCG  
Sbjct: 327 QREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDL 386

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +AL +F++M ++GV+P  +TF  +LSAC
Sbjct: 387 VRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSAC 446

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            + G VKEG + F+AMK  Y ++P IEHY+CMVDL  RAG ++EA+ L+E+MP E D  +
Sbjct: 447 SYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIV 506

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L  C  H    L     E++ +L+P+NA  Y+ LS ++AT G W    ++R  +  
Sbjct: 507 WGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKI-N 565

Query: 568 KHVGKLPGCSWAD 580
           + V K PGCSW +
Sbjct: 566 RRVIKFPGCSWIE 578


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  301 bits (772), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 192/653 (29%), Positives = 306/653 (46%), Gaps = 128/653 (19%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L    R G   +A  LFD MP RN  SWNAMI      G    +  LF+ MP +++F
Sbjct: 53  NAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVRDEF 112

Query: 105 SW--------------------------------NMLISGFAK----------------- 115
           SW                                N +ISG+AK                 
Sbjct: 113 SWTVMVSCYARGGDLELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAP 172

Query: 116 ------ADLAAL-EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 168
                 + LA L + G+ + +    + +  D    + ++  + + GD N+A+     ++ 
Sbjct: 173 DLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIES 232

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           P+      L++GY   G++ DAR +FDR  + + V WN M+ GY+  +   EA  LF +M
Sbjct: 233 PNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEM 292

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
                ++++ +  +++S  +  G L+  K +          + V   +AL+  Y +R M 
Sbjct: 293 ----PIKNSISWTTIISGLARAGKLQEAKDLLDKMS----FNCVAAKTALMHGYLQRNMA 344

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
            DA ++F  ++V+DT+  NTMI+ Y  CG +E+A  +F+ MPNK ++SWN+MI G +Q+G
Sbjct: 345 DDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDG 404

Query: 349 SPIEALDLFCNMNKLDL-------------------------------RMDKFSLASVIS 377
              +A+ +F  MN+ +                                R D  + AS + 
Sbjct: 405 QMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLR 464

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------ 419
           ACAN++ L +G Q+   +   G  +D     +L+  Y KCG                   
Sbjct: 465 ACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVS 524

Query: 420 ---------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                          +A+A+F EM   GV+P  +TF  ILSAC H GL+ EG  +F +M 
Sbjct: 525 WNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSMT 584

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
            +Y + P  EHY+CMVDL  RAG LNEA  L++ M  + + G+W ++L  C  H +  L 
Sbjct: 585 KEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHMHKNHELA 644

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +  AER+ EL+P  A  Y+ LS+I A +G+W++S   R  ++EK V K PG +
Sbjct: 645 QLAAERLSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEKGVNKPPGLA 697



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 127/539 (23%), Positives = 235/539 (43%), Gaps = 86/539 (15%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N+ L    R G    A  LFD MP RN  ++NAM+    + G  +++  LF+ MP +N 
Sbjct: 21  SNKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNT 80

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQV 162
            SWN +I+  +       ++G+   +  L + +   D    + +V+ Y + GD   A  V
Sbjct: 81  VSWNAMIAALS-------DHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDV 133

Query: 163 LNMMKEPDD---FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
           L+ M  P D    C +A+ISGYA  G+ +DA ++         V WNS ++G   + E  
Sbjct: 134 LDRM--PGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMV 191

Query: 220 EALLLFHKM--------------RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
            A+  F +M               R G L  AS+  + + + + + ++     ++G+ C+
Sbjct: 192 RAVQFFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWV---TLLNGY-CR 247

Query: 266 VGVIDD------------VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
            G I D            V+  + +LD Y       +ACKLF E+ + ++I   T+I+  
Sbjct: 248 AGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGL 307

Query: 314 SSCGRIE-------------------------------DAKHIFRTMPNKSLISWNSMIV 342
           +  G+++                               DA+ IF  M     + WN+MI 
Sbjct: 308 ARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMIS 367

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G  Q G   EA+ LF  M   D+     S  ++I+  A    +     +F R+       
Sbjct: 368 GYVQCGILEEAMLLFQRMPNKDM----VSWNTMIAGYAQDGQMHKAIGIFRRMN----RR 419

Query: 403 DQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
           + +   S++  + +     DAL  F  MR    +    T+ + L AC +  ++  G++  
Sbjct: 420 NTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLH 479

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           + +    HI+      + ++  +A+ G + EA  + ++M ++ D+  W++++ G  ++G
Sbjct: 480 NLLVRSGHINDSFAG-NALISTYAKCGRILEAKQIFDEMVYK-DIVSWNALIDGYASNG 536



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 20/257 (7%)

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L   ++ G  + A +LF  + + +T+  N M++  +  GRI++A+ +F  MP ++ +SWN
Sbjct: 25  LTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWN 84

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           +MI  LS +G   +A  LF   +++ +R D+FS   ++S  A    LEL   V  R+   
Sbjct: 85  AMIAALSDHGRVADARSLF---DRMPVR-DEFSWTVMVSCYARGGDLELARDVLDRMPG- 139

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
             D       +++  Y K G   DA+ L  EM      P ++++ + L+     G +   
Sbjct: 140 --DKCTACYNAMISGYAKNGRFDDAMKLLREM----PAPDLVSWNSALAGLTQSGEMVRA 193

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            ++FD M        ++  ++ M+  F R G LN A +   ++    +V  W ++L G  
Sbjct: 194 VQFFDEMV------KDMTSWNLMLAGFVRTGDLNAASSFFAKIE-SPNVISWVTLLNGYC 246

Query: 517 AHGDKGLGRKVAERMIE 533
             G     R + +RM E
Sbjct: 247 RAGRIADARDLFDRMPE 263



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A  L++C     +HVG+QLH   ++ G +N +    N L+  Y +CG   +A  +FDEM 
Sbjct: 460 ASCLRACANLAVLHVGRQLHNLLVRSGHINDSFA-GNALISTYAKCGRILEAKQIFDEMV 518

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADL--AALE 122
            ++  SWNA+I+G+   G   +++ +F  M     + ++ ++  ++S  + A L    L 
Sbjct: 519 YKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLF 578

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
           +   +    L+  +   +   + +V+L G+ G  N A +++  M+ +P+     AL+
Sbjct: 579 FFYSMTKEYLLKPV---AEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALL 632


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  301 bits (772), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 178/551 (32%), Positives = 280/551 (50%), Gaps = 67/551 (12%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAA 120
           LFD +PR       A + G  KL   ++ +++ + + ++     +  I    K  A  AA
Sbjct: 130 LFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQSAA 189

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              G Q H H LV G+  D  + ++LV+ Y K GD +SA      M   D   ++ LI+G
Sbjct: 190 SCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITG 249

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+  G + +ARR+FD     +S  WNSMI+ Y    E  EAL LF +M R G   +A T+
Sbjct: 250 YSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITI 309

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            +V S C+  G L+ G++      +   + +VIV +AL++ Y K                
Sbjct: 310 TTVFSICAKTGDLDTGRRARAW-IREEDLQNVIVHTALMEMYVK---------------- 352

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          C  I++A+H F  MP + +++W++MI G SQNG P E+L+LF  M
Sbjct: 353 ---------------CRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERM 397

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
              + + ++ +L  V+SACA + S ELGEQ+   +    L     + ++L+D Y KCG+ 
Sbjct: 398 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHV 457

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           DA+AL+ +M   G++P  +TF A+L+AC
Sbjct: 458 ARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTAC 517

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV +G  +F+ MK + H+ P++EH +C+VDL  ++G L EA   I  M  E +  +
Sbjct: 518 THAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVI 577

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           WS++L  C AH D  L +  A +++ L+P N+  Y+ LS+I+A +G W     IRD+MR 
Sbjct: 578 WSTLLSACRAHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRS 637

Query: 568 KHVGKLPGCSW 578
           K++ KL   SW
Sbjct: 638 KNLQKLSAYSW 648



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 209/443 (47%), Gaps = 43/443 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+SC    +   G Q H H L +G+L     +   L+  Y + G+   AL+ F EMP +
Sbjct: 180 VLKSCAQSAASCQGSQTHCHALVRGMLGDVF-VQTALVDFYAKNGDMDSALMAFKEMPVK 238

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +    N +I G+ K G  E++ +LF+ MP++   SWN +I+ +A            +   
Sbjct: 239 DPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHG--GEFREALTLFDQ 296

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKM 187
           +L  G   +++  +++ ++  K GD ++  +    ++E D       +AL+  Y  C  +
Sbjct: 297 MLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAI 356

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           ++AR  FDR      V W++MI+GY  N    E+L LF +M+      +  TL  VLSAC
Sbjct: 357 DEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSAC 416

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + LG  E G+Q+  +     +     + SAL+D Y+K                       
Sbjct: 417 AQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTK----------------------- 453

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                   CG +  A+ +F  M  K +++WNSMI GL+ NG   +A+ L+  M    ++ 
Sbjct: 454 --------CGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQP 505

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCG--YDALAL 424
           ++ +  ++++AC +   ++ G   F  +      S Q+   + +VD  CK G  ++A   
Sbjct: 506 NEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKF 565

Query: 425 FNEMRNTGVKPTIITFTAILSAC 447
             +M    V+P  + ++ +LSAC
Sbjct: 566 ICDME---VEPNAVIWSTLLSAC 585



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 176/382 (46%), Gaps = 45/382 (11%)

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           L AL+S   N      AR +FD     ++ +  + +SG    +   E + +   + R G 
Sbjct: 114 LHALLS---NASTYRAARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGG 170

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
              +  +  VL +C+       G Q H HA   G++ DV V +AL+D Y+K G    A  
Sbjct: 171 AIPSGCIPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALM 230

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
            F E+ V D I +N +IT YS  G +E+A+ +F +MP ++  SWNSMI   +  G   EA
Sbjct: 231 AFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREA 290

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSLVD 412
           L LF  M +     +  ++ +V S CA    L+ G +  AR  I   D  + I+ T+L++
Sbjct: 291 LTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRR--ARAWIREEDLQNVIVHTALME 348

Query: 413 FYCKC--------------------------GY-------DALALFNEMRNTGVKPTIIT 439
            Y KC                          GY       ++L LF  M+ T  KP  +T
Sbjct: 349 MYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVT 408

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY--SCMVDLFARAGCLNEAVNLIE 497
              +LSAC   G  + G++  + ++ Q      +  Y  S ++D++ + G +  A ++  
Sbjct: 409 LVGVLSACAQLGSDELGEQIGNYIESQTL---PLTSYLGSALIDMYTKCGHVARARSVFN 465

Query: 498 QMPFEADVGMWSSILRGCVAHG 519
           +M  +  V  W+S++RG   +G
Sbjct: 466 RMEQKV-VVTWNSMIRGLALNG 486


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 177/553 (32%), Positives = 275/553 (49%), Gaps = 67/553 (12%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAA 120
           LFD +PR        +I    +L   ++ L  F+ + ++        +    K  A LAA
Sbjct: 41  LFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAA 100

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              GKQ+H H +V GL  D  + ++LV+ Y K GD + A +V + M   D   ++ LI+G
Sbjct: 101 SRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITG 160

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+  G +  ARR+FD     +S  WNSMI+ Y    E  EAL LF +M   G   +A T+
Sbjct: 161 YSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITI 220

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A++ S C+  G LE GK                                 A  L +E  +
Sbjct: 221 ATMFSICAKTGDLETGKW--------------------------------ARSLIAEQDL 248

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + I+   ++ +Y  C  I++A+  F  M  + +++W++MI G +QNG P E+L+LF  M
Sbjct: 249 QNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM 308

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
                + ++ +L  V+SACA + S ELG Q+ + V    L     + ++L+D Y KCG+ 
Sbjct: 309 KATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHV 368

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           DA+ L+ EM    V+P  ITF A+L+AC
Sbjct: 369 GRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTAC 428

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV +G  +F  MK  +H+ P++EH +C+VDL  ++G L EA   I  M  E +  +
Sbjct: 429 THAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVI 488

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           WS++L  C AH D  L +  A +++ L+P+N+  Y+ LS+I+A +G W     IRD+MR 
Sbjct: 489 WSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRS 548

Query: 568 KHVGKLPGCSWAD 580
           K+V KL   SW +
Sbjct: 549 KNVQKLSAYSWIE 561



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 214/443 (48%), Gaps = 43/443 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC    +   GKQ+H H + +G+L     +   L+  Y + G+   A+ +FDEMP +
Sbjct: 91  VVKSCAILAASRQGKQVHCHAIVRGLLGDIF-VQTALVDFYAKNGDMDCAVKVFDEMPVK 149

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +    N +I G+ K G   K+ +LF+ M ++   SWN +I+ +A       +   ++   
Sbjct: 150 DPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHG--GEYQEALRLFRR 207

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKM 187
           +L  G   +++  +++ ++  K GD  +     +++ E D       +AL+  Y  C  +
Sbjct: 208 MLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAI 267

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           ++ARR FDR      V W++MI+GY  N    E+L LF +M+      +  TL  VLSAC
Sbjct: 268 DEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSAC 327

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + LG  E G Q+  H     +     + SAL+D Y+K                       
Sbjct: 328 AQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTK----------------------- 364

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                   CG +  A+ +F  M +K +I+WNSM+ GL+ NG   +A+ L+  M + D++ 
Sbjct: 365 --------CGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQP 416

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCG--YDALAL 424
           ++ +  ++++AC +   ++ G   F  +  I   S Q+   + +VD  CK G   +A   
Sbjct: 417 NEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKF 476

Query: 425 FNEMRNTGVKPTIITFTAILSAC 447
             +M    V+P  + ++ +LSAC
Sbjct: 477 ICDME---VEPNAVIWSTLLSAC 496



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 169/366 (46%), Gaps = 42/366 (11%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR +FD     +  +  ++IS         E L  F  + R G       +  V+ +C+ 
Sbjct: 38  ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L     GKQVH HA   G++ D+ V +AL+D Y+K G    A K+F E+ V D I +N +
Sbjct: 98  LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT YS  G +  A+ +F  M  ++  SWNSMI   +  G   EAL LF  M     R + 
Sbjct: 158 ITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNA 217

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSLVDFYCKC----------- 417
            ++A++ S CA    LE G+  +AR  I   D  + I+ T+L++ Y KC           
Sbjct: 218 ITIATMFSICAKTGDLETGK--WARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFD 275

Query: 418 ---------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                          GY       ++L LF  M+ T  KP  +T   +LSAC   G  + 
Sbjct: 276 RMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDEL 335

Query: 456 GQKWFDAMKWQYHIDPEIEHY--SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           G +    ++ Q   +  +  Y  S ++D++ + G +  A ++  +M  +  V  W+S++R
Sbjct: 336 GGQIGSHVESQ---NLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKV-VITWNSMMR 391

Query: 514 GCVAHG 519
           G   +G
Sbjct: 392 GLALNG 397


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 188/614 (30%), Positives = 296/614 (48%), Gaps = 98/614 (15%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D     LA  L  C     +  G QLH   +K G L   + +AN L+ MY +C    +A 
Sbjct: 245 DPNFATLACFLSVCAAEADLLSGVQLHTLAVKYG-LEPEVAVANTLVSMYAKCQCLEEAW 303

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
            LF  MPR +  +WN MI G ++ G  + +L+LF  M +      ++ ++    A  +L 
Sbjct: 304 RLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELN 363

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
             + GK+IH +I+ N                  C                D F +SAL+ 
Sbjct: 364 GFKQGKEIHGYIVRN------------------CAHV-------------DVFLVSALVD 392

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            Y  C  +  A+ VFD T     V+ ++MISGY+ N     A+ +F  +   G+  +A  
Sbjct: 393 IYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVM 452

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           +AS L AC+S+  +  G+++HG+  K        V SAL+D YSK               
Sbjct: 453 VASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSK--------------- 497

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CGR++ + ++F  M  K  ++WNSMI   +QNG P EALDLF  
Sbjct: 498 ----------------CGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQ 541

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M    ++ +  +++S++SACA + ++  G+++   +    + +D    ++L+D Y KCG 
Sbjct: 542 MIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGN 601

Query: 419 -------------------------YDALALFNE-------MRNTGVKPTIITFTAILSA 446
                                    Y A  L  E       M+  G K   +TF A++SA
Sbjct: 602 LELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISA 661

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H G V+EG + F  M  +YHI+P++EH SCMVDL++RAG L++A+  I  MPF+ D G
Sbjct: 662 CAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAG 721

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C  H +  L    ++ + +LDP N   Y+ +S+I A +G W+  S +R +M+
Sbjct: 722 IWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMK 781

Query: 567 EKHVGKLPGCSWAD 580
           +K V K+PG SW D
Sbjct: 782 DKKVQKIPGYSWVD 795



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 141/572 (24%), Positives = 244/572 (42%), Gaps = 114/572 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP----IANRLLQMYMRCGNPTDALLL 63
           L  LL+ C     + +G ++H   +  G+L++  P    +  RL+ MY+      DA+ +
Sbjct: 39  LLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAV 98

Query: 64  FDEMPRRNC---FSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFA 114
           F  +PR        WN +I GF   GH   ++  +  M      P+ +  +   ++   A
Sbjct: 99  FSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCA 158

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
              L AL  G+ +H      GLD D  +GS+L+ +Y                        
Sbjct: 159 A--LGALHLGRLVHRTTRALGLDRDMYVGSALIKMY------------------------ 192

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
                  A+ G ++ AR VFD   +   V+WN M+ GY+   +   A+ LF  MR +G  
Sbjct: 193 -------ADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCD 245

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            + +TLA  LS C++   L  G Q+H  A K G+  +V VA                   
Sbjct: 246 PNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVA------------------- 286

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                       NT++++Y+ C  +E+A  +F  MP   L++WN MI G  QNG   +AL
Sbjct: 287 ------------NTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDAL 334

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LFC+M K  L+ D  +LAS++ A   ++  + G+++   +       D  + ++LVD Y
Sbjct: 335 RLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIY 394

Query: 415 CKC--------------------------GY-------DALALFNEMRNTGVKPTIITFT 441
            KC                          GY        A+ +F  +   G+KP  +   
Sbjct: 395 FKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVA 454

Query: 442 AILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           + L AC     ++ GQ+     +K  Y     +E  S ++D++++ G L+ +  +  +M 
Sbjct: 455 STLPACASMAAMRIGQELHGYVLKNAYEGRCYVE--SALMDMYSKCGRLDLSHYMFSKMS 512

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
            + +V  W+S++     +G+      +  +MI
Sbjct: 513 AKDEV-TWNSMISSFAQNGEPEEALDLFRQMI 543


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  301 bits (771), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 203/678 (29%), Positives = 315/678 (46%), Gaps = 138/678 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++++C    ++    QLH  F+ KG     + +   L+  Y + G   +A L+FD +
Sbjct: 157 LASVVRACTQLGNLSQALQLH-GFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGL 215

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             +   +W A+I G+ KLG  E SL+LFN M + + +    +IS    A   L  LE GK
Sbjct: 216 KVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGK 275

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH ++L  G D D     S+VN                            +I  Y  C 
Sbjct: 276 QIHGYVLRRGFDMDV----SVVN---------------------------GIIDFYLKCH 304

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           K+   R++F+R  D   V W +MI+G + N+   +A+ LF +M R G   DA    SVL+
Sbjct: 305 KVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLN 364

Query: 246 ACSSLGFLEHGKQVHGHACKV----------GVID---------------------DVIV 274
           +C SL  L+ G+QVH +A KV          G+ID                     +V+ 
Sbjct: 365 SCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVS 424

Query: 275 ASALLDTYSKRGMPSDACKLFSELKV---------------------------------- 300
            +A+++ YS++    +A  LF E+++                                  
Sbjct: 425 YNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLII 484

Query: 301 -----YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                 D+   + +I VYS C  + DA+ +F  + ++ ++ WN+M  G SQ     E+L 
Sbjct: 485 KFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLK 544

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           L+ ++    L+ ++F+ A+VI+A +NI+SL  G+Q   +V  +GLD D  ++ SLVD Y 
Sbjct: 545 LYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYA 604

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                   AL +F  M   GVKP  +TF  
Sbjct: 605 KCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVG 664

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H GL+  G   F++M  ++ I+P I+HY+CMV L  RAG + EA   +++MP +
Sbjct: 665 LLSACSHAGLLDLGFHHFESMS-KFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIK 723

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W S+L  C   G   LG   AE  I  DP ++ +YI LS+IFA+ G W    ++R
Sbjct: 724 PAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPADSGSYILLSNIFASKGMWASVRMVR 783

Query: 563 DIMREKHVGKLPGCSWAD 580
           + M    V K PG SW +
Sbjct: 784 EKMDMSRVVKEPGWSWIE 801



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 144/556 (25%), Positives = 246/556 (44%), Gaps = 125/556 (22%)

Query: 8   LARLLQ--SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           L +LLQ  S N   S H  K++H H +  G     + + N LL  Y +    +DA  LFD
Sbjct: 53  LGKLLQLPSPNILTS-HYYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFD 111

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKA--DLAALE 122
            MP RN  +W++M+  + + G+  ++L LF   M   ++     +++   +A   L  L 
Sbjct: 112 TMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLS 171

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
              Q+H  ++  G   D  +G+SL++ Y K G  + A  + + +K       +A+I+GYA
Sbjct: 172 QALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYA 231

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             G+              S V                 +L LF++MR   V  D   ++S
Sbjct: 232 KLGR--------------SEV-----------------SLKLFNQMREGDVYPDRYVISS 260

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VLSACS L FLE GKQ+HG+  + G   DV V + ++D Y K                  
Sbjct: 261 VLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLK------------------ 302

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        C +++  + +F  + +K ++SW +MI G  QN    +A+DLF  M +
Sbjct: 303 -------------CHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVR 349

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
              + D F   SV+++C ++ +L+ G QV A    + +D+D  +   L+D Y KC     
Sbjct: 350 KGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTN 409

Query: 418 ---------------------GY-------DALALFNEMRNTGVKPTIITFTAILSACD- 448
                                GY       +AL LF EMR +   PT++TF ++L     
Sbjct: 410 ARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSS 469

Query: 449 ----------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
                     HC ++K G    D+              S ++D++++  C+ +A  + E+
Sbjct: 470 LFLLELSSQIHCLIIKFGVS-LDSFAG-----------SALIDVYSKCSCVGDARLVFEE 517

Query: 499 MPFEADVGMWSSILRG 514
           + ++ D+ +W+++  G
Sbjct: 518 I-YDRDIVVWNAMFSG 532



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 120/257 (46%), Gaps = 39/257 (15%)

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN- 359
           +D  L+NT++  YS      DA+ +F TMP+++L++W+SM+   +Q+G  +EAL LFC  
Sbjct: 85  HDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRF 144

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M     + +++ LASV+ AC  + +L    Q+   V   G   D  + TSL+DFY K GY
Sbjct: 145 MRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGY 204

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                             +L LFN+MR   V P     +++LSA
Sbjct: 205 VDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSA 264

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C     + EG K       +   D ++   + ++D + +   +     L  ++  + DV 
Sbjct: 265 CSMLEFL-EGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRL-VDKDVV 322

Query: 507 MWSSILRGCVA---HGD 520
            W++++ GC+    HGD
Sbjct: 323 SWTTMIAGCMQNSFHGD 339


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  301 bits (771), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 177/553 (32%), Positives = 275/553 (49%), Gaps = 67/553 (12%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAA 120
           LFD +PR        +I    +L   ++ L  F+ + ++        +    K  A LAA
Sbjct: 41  LFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAA 100

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              GKQ+H H +V GL  D  + ++LV+ Y K GD + A +V + M   D   ++ LI+G
Sbjct: 101 SRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITG 160

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+  G +  ARR+FD     +S  WNSMI+ Y    E  EAL LF +M   G   +A T+
Sbjct: 161 YSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITI 220

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A++ S C+  G LE GK                                 A  L +E  +
Sbjct: 221 ATMFSICAKTGDLETGKW--------------------------------ARSLIAEQDL 248

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + I+   ++ +Y  C  I++A+  F  M  + +++W++MI G +QNG P E+L+LF  M
Sbjct: 249 QNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM 308

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
                + ++ +L  V+SACA + S ELG Q+ + V    L     + ++L+D Y KCG+ 
Sbjct: 309 KATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHV 368

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           DA+ L+ EM    V+P  ITF A+L+AC
Sbjct: 369 GRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTAC 428

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV +G  +F  MK  +H+ P++EH +C+VDL  ++G L EA   I  M  E +  +
Sbjct: 429 THAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVI 488

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           WS++L  C AH D  L +  A +++ L+P+N+  Y+ LS+I+A +G W     IRD+MR 
Sbjct: 489 WSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRS 548

Query: 568 KHVGKLPGCSWAD 580
           K+V KL   SW +
Sbjct: 549 KNVQKLSAYSWIE 561



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 214/443 (48%), Gaps = 43/443 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC    +   GKQ+H H + +G+L     +   L+  Y + G+   A+ +FDEMP +
Sbjct: 91  VVKSCAILAASRQGKQVHCHAIVRGLLGDIF-VQTALVDFYAKNGDMDCAVKVFDEMPVK 149

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +    N +I G+ K G   K+ +LF+ M ++   SWN +I+ +A       +   ++   
Sbjct: 150 DPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHG--GEYQEALRLFRR 207

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKM 187
           +L  G   +++  +++ ++  K GD  +     +++ E D       +AL+  Y  C  +
Sbjct: 208 MLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAI 267

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           ++ARR FDR      V W++MI+GY  N    E+L LF +M+      +  TL  VLSAC
Sbjct: 268 DEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSAC 327

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + LG  E G Q+  H     +     + SAL+D Y+K                       
Sbjct: 328 AQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTK----------------------- 364

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                   CG +  A+ +F  M +K +I+WNSM+ GL+ NG   +A+ L+  M + D++ 
Sbjct: 365 --------CGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQP 416

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCG--YDALAL 424
           ++ +  ++++AC +   ++ G   F  +  I   S Q+   + +VD  CK G   +A   
Sbjct: 417 NEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKF 476

Query: 425 FNEMRNTGVKPTIITFTAILSAC 447
             +M    V+P  + ++ +LSAC
Sbjct: 477 ICDME---VEPNAVIWSTLLSAC 496



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 169/366 (46%), Gaps = 42/366 (11%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR +FD     +  +  ++IS         E L  F  + R G       +  V+ +C+ 
Sbjct: 38  ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L     GKQVH HA   G++ D+ V +AL+D Y+K G    A K+F E+ V D I +N +
Sbjct: 98  LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT YS  G +  A+ +F  M  ++  SWNSMI   +  G   EAL LF  M     R + 
Sbjct: 158 ITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNA 217

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSLVDFYCKC----------- 417
            ++A++ S CA    LE G+  +AR  I   D  + I+ T+L++ Y KC           
Sbjct: 218 ITIATMFSICAKTGDLETGK--WARSLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFD 275

Query: 418 ---------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                          GY       ++L LF  M+ T  KP  +T   +LSAC   G  + 
Sbjct: 276 RMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDEL 335

Query: 456 GQKWFDAMKWQYHIDPEIEHY--SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           G +    ++ Q   +  +  Y  S ++D++ + G +  A ++  +M  +  V  W+S++R
Sbjct: 336 GGQIGSHVESQ---NLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKV-VITWNSMMR 391

Query: 514 GCVAHG 519
           G   +G
Sbjct: 392 GLALNG 397


>gi|356541109|ref|XP_003539025.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Glycine max]
          Length = 681

 Score =  301 bits (770), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 188/625 (30%), Positives = 312/625 (49%), Gaps = 76/625 (12%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           H+  +K G+++S     N+L+ +Y   G   +A  LFDEMP  N FSWNA+I  ++K  +
Sbjct: 6   HVQAIKSGLVSSIFT-CNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHN 64

Query: 88  KEKSLQLFNVMPQKNDFSWNMLISGFAKAD------------------------------ 117
             ++  LF+    ++  S+N L+S +  +D                              
Sbjct: 65  LTQARALFDSASHRDLVSYNSLLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITLTNM 124

Query: 118 ------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
                 L  L YGKQ+HS+++    D      SSL+++Y KCG F  A  +     E  D
Sbjct: 125 LNLAAKLRVLCYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSCDEMVD 184

Query: 172 FC-LSALISGYANCGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMR 229
               +A+++     GKM+ A  VF +  +   +V WN++I+GY  N    ++L  F +M 
Sbjct: 185 LVSKNAMVAACCREGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTFFVEMI 244

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
            NG+  +  TLASVL+ACS+L   + GK VH    K G   +  ++S ++D YSK G   
Sbjct: 245 ENGIDFNEHTLASVLNACSALKCSKLGKSVHAWVLKKGYSSNQFISSGVVDFYSKCGNIR 304

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
            A  +++++ +     + ++I  YSS G + +A+ +F ++  ++ + W ++  G  ++  
Sbjct: 305 YAELVYAKIGIKSPFAVASLIAAYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQ 364

Query: 350 PIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
                 LF     K  L  D   + S++ ACA  + L LG+Q+ A +  +    D+ + +
Sbjct: 365 CEAVFKLFREFRTKEALVPDAMIIVSILGACAIQADLSLGKQIHAYILRMRFKVDKKLLS 424

Query: 409 SLVDFYCKCG---------------------YD--------------ALALFNEMRNTGV 433
           SLVD Y KCG                     Y+              A+ LF EM N  V
Sbjct: 425 SLVDMYSKCGNVAYAEKLFRLVTDSDRDAILYNVIIAGYAHHGFENKAIELFQEMLNKSV 484

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           KP  +TF A+LSAC H GLV+ G+++F +M+  Y++ PEI HY+CMVD++ RA  L +AV
Sbjct: 485 KPDAVTFVALLSACRHRGLVELGEQFFMSME-HYNVLPEIYHYACMVDMYGRANQLEKAV 543

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             + ++P + D  +W + L  C    D  L ++  E +++++ +N   Y+QL++ +A  G
Sbjct: 544 EFMRKIPIKIDATIWGAFLNACQMSSDAALVKQAEEELLKVEADNGSRYVQLANAYAAKG 603

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSW 578
           +W++   IR  MR     KL GCSW
Sbjct: 604 KWDEMGRIRKKMRGHEAKKLAGCSW 628



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 142/327 (43%), Gaps = 64/327 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+      +GK +H   LKKG  +S   I++ ++  Y +CGN   A L++ ++
Sbjct: 255 LASVLNACSALKCSKLGKSVHAWVLKKG-YSSNQFISSGVVDFYSKCGNIRYAELVYAKI 313

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
             ++ F+  ++I  +   G+  ++ +LF+ + ++N   W  L SG+ K            
Sbjct: 314 GIKSPFAVASLIAAYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQCEAVFKLFR 373

Query: 116 ----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                                 A  A L  GKQIH++IL      D  L SSLV++Y KC
Sbjct: 374 EFRTKEALVPDAMIIVSILGACAIQADLSLGKQIHAYILRMRFKVDKKLLSSLVDMYSKC 433

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           G+   A ++  ++ + D                               ++++N +I+GY 
Sbjct: 434 GNVAYAEKLFRLVTDSD-----------------------------RDAILYNVIIAGYA 464

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
            +  + +A+ LF +M    V  DA T  ++LSAC   G +E G+Q         V+ ++ 
Sbjct: 465 HHGFENKAIELFQEMLNKSVKPDAVTFVALLSACRHRGLVELGEQFFMSMEHYNVLPEIY 524

Query: 274 VASALLDTYSKRGMPSDACKLFSELKV 300
             + ++D Y +      A +   ++ +
Sbjct: 525 HYACMVDMYGRANQLEKAVEFMRKIPI 551


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  301 bits (770), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 194/609 (31%), Positives = 305/609 (50%), Gaps = 71/609 (11%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           + L++C  H  +  GK LH  ++K  +  ST  ++N  L +Y +C   + A  +FD    
Sbjct: 13  QFLKTCIAHRDLRTGKSLHALYIKSFVPTSTY-LSNHFLLLYSKCRRLSAARRVFDHTHD 71

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS 129
            N FS+N +I  + K  + E + QLF+ MPQ +  S+N LI+ +A+       +  Q+  
Sbjct: 72  CNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAF--QLFL 129

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL--SALISGYANCGKM 187
            +    LD D    S ++   G           L+++   D +    +ALI+ Y+  G +
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189

Query: 188 NDARRVFD-RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            +ARR+F   + D   V WNSM+  Y+ + E ++AL L+ +M   G++ D  TLASVL+A
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTA 249

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            +++  L  G Q H    K G   +  V S L+D YSK G     C L            
Sbjct: 250 FTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCG----GCML------------ 293

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS-QNGSPIEALDLFCNMNKLDL 365
                         D + +F  + N  L+ WN+MI G S       EAL+ F  +  +  
Sbjct: 294 --------------DCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGH 339

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG------ 418
           R D  SL  VISAC+N+SS   G QV      + + S++I ++ +L+  Y KCG      
Sbjct: 340 RPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAK 399

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                      + +L LF  M   G  PT ITF ++L+AC H G
Sbjct: 400 TLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTG 459

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V++G+ +F+ MK ++ I+PE  H+SCM+DL  RAG L+EA  LIE +PF+     WS++
Sbjct: 460 RVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSAL 519

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  HG+  L  K A R+++LDP NA  Y+ L++I++ +G  + ++ +R +MR++ V 
Sbjct: 520 LGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVK 579

Query: 572 KLPGCSWAD 580
           K PGCSW +
Sbjct: 580 KKPGCSWIE 588


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  301 bits (770), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 188/623 (30%), Positives = 309/623 (49%), Gaps = 71/623 (11%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+QLH   LK G+ ++T  I N L+ MY + G+  DA LLFD  P  N  S N M+ G+ 
Sbjct: 288 GRQLHSLVLKLGLHSNTF-IQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYA 346

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGKQIHSH-ILVNGLDFDS 140
           K G  + + +LF++MP K   S+  +I G  + +    ALE  K + S  ++ N L   +
Sbjct: 347 KAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVN 406

Query: 141 VL------------------------------GSSLVNLYGKCGDFNSANQVLNMMKEPD 170
           V+                               ++L+  Y  C     A ++ + M E +
Sbjct: 407 VIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVN 466

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
               + +++GYA  G ++ AR +F+R  D   + W +MI GYI  N   EAL+++  M R
Sbjct: 467 LVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLR 526

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
           +G+  +   + +++SAC  L  +  G Q+HG   K G      + + ++  Y+  GM   
Sbjct: 527 SGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDL 586

Query: 291 ACKLFSELKVYDTI-LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           AC  F E+   D +   N +++ +     ++ A+ IF  MP + + SW++MI G +Q   
Sbjct: 587 ACLQF-EVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQ 645

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
              AL+LF  M    ++ ++ ++ SV SA A + +L+ G      +    +  +  +  +
Sbjct: 646 SRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAA 705

Query: 410 LVDFYCKCGY--DALALFNEMRNT---------------------------------GVK 434
           L+D Y KCG    AL  FN++R+                                   +K
Sbjct: 706 LIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIK 765

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P  ITF  +LSAC H GLV+ G++ F  MK  Y+++P+I+HY CMVDL  RAG L EA  
Sbjct: 766 PNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEE 825

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
           +I  MP +AD+ +W ++L  C  HGD  +G + AE +  L P +    + LS+I+A +G 
Sbjct: 826 MIRSMPMKADIVIWGTLLAACRTHGDVNIGERAAESLAGLAPSHGGGKVLLSNIYADAGR 885

Query: 555 WEKSSLIRDIMREKHVGKLPGCS 577
           WE  SL+R  ++ + + ++PGCS
Sbjct: 886 WEDVSLVRRAIQNQRMERMPGCS 908



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 200/390 (51%), Gaps = 13/390 (3%)

Query: 116 ADLAALEY------GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
           A ++AL+Y      G+Q+HS +L  GL  ++ + +SL+N+Y K G    A  + +     
Sbjct: 274 ALVSALKYCSSSSQGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTL 333

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           +    + ++ GYA  G++++AR++FD   D   V + +MI G + N    EAL +F  MR
Sbjct: 334 NPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMR 393

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
            +GV+ +  TL +V+ ACS  G + + + +H  A K+ V   V+V++ L+  Y       
Sbjct: 394 SDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVG 453

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           +A +LF  +   + +  N M+  Y+  G ++ A+ +F  +P+K +ISW +MI G      
Sbjct: 454 EARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNR 513

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
             EAL ++  M +  L +++  + +++SAC  ++++  G Q+   V   G D    I T+
Sbjct: 514 LHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTT 573

Query: 410 LVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
           ++ FY  CG   LA        G K  + ++ A++S      +V + +K FD M      
Sbjct: 574 IIHFYAACGMMDLACLQ--FEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMP----- 626

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           + ++  +S M+  +A+      A+ L  +M
Sbjct: 627 ERDVFSWSTMISGYAQTDQSRIALELFHKM 656



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%)

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           P   + +FCN  +L     +  LA ++SA    SS   G Q+ + V  +GL S+  I  S
Sbjct: 252 PQHFIGIFCNA-RLHQNHYECELA-LVSALKYCSSSSQGRQLHSLVLKLGLHSNTFIQNS 309

Query: 410 LVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDH--CGLVKEGQKWFDAMKW 465
           L++ Y K G   DA  LF+        PT+   +  +  C +   G +   +K FD M  
Sbjct: 310 LINMYAKRGSIKDAQLLFDAC------PTLNPISCNIMVCGYAKAGQLDNARKLFDIMP- 362

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
               D     Y+ M+    +  C  EA+ + + M
Sbjct: 363 ----DKGCVSYTTMIMGLVQNECFREALEVFKDM 392


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 181/603 (30%), Positives = 291/603 (48%), Gaps = 100/603 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C  +  +  GK++H   +      +   +   ++ MY +C    DA  +FD MP R
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTG-VVNMYAKCRQIDDAYKMFDRMPER 211

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKADLAALEYGKQI 127
           +  SWN +I GF + G  +K+L+L   M    Q+ D S  ++    A AD+  L  GK I
Sbjct: 212 DLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPD-SITLVTVLPAAADVGLLMVGKSI 270

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H + +  G        + LVN+                         +AL   Y+ CG +
Sbjct: 271 HGYAIRAGF-------AKLVNIS------------------------TALADMYSKCGSV 299

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
             AR +FD     + V WNSM+ GY+ N E  +A+ +F KM   G+     T+   L AC
Sbjct: 300 ETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHAC 359

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + LG LE GK VH    ++ +  D+ V                               +N
Sbjct: 360 ADLGDLERGKFVHKFVDQLNLGSDISV-------------------------------MN 388

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           ++I++YS C R++ A  IF  +  ++ +SWN+MI+G +QNG   EAL+ F  M  L ++ 
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------Y 419
           D F++ SVI A A +S     + +   +    LD +  ++T+LVD Y KCG        +
Sbjct: 449 DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLF 508

Query: 420 D-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
           D                         AL LF++M+   V+P  IT+ +++SAC H GLV 
Sbjct: 509 DMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVD 568

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG + F +MK  Y ++P ++HY  MVDL  RAG + EA + IE MP    + ++ +    
Sbjct: 569 EGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGA 628

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H +  +G K A+++ EL+P+    ++ L++I+A++ +W K + +R  M +K + K P
Sbjct: 629 CKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTP 688

Query: 575 GCS 577
           GCS
Sbjct: 689 GCS 691



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 158/378 (41%), Gaps = 66/378 (17%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + L+S ++  G +N+A RVF+   D    ++++M+ GY  N+    AL    +MR + V 
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
                   +L  C     L+ GK++HG         +V   + +++ Y+K     DA K+
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F  +                               P + L+SWN++I G SQNG   +AL
Sbjct: 205 FDRM-------------------------------PERDLVSWNTIIAGFSQNGFAKKAL 233

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +L   M     R D  +L +V+ A A++  L +G+ +       G      IST+L D Y
Sbjct: 234 ELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMY 293

Query: 415 CKCG--------YD-------------------------ALALFNEMRNTGVKPTIITFT 441
            KCG        +D                         A+A+F +M   G+ PT +T  
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
             L AC   G ++ G K+      Q ++  +I   + ++ ++++   ++ A ++   +  
Sbjct: 354 EALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412

Query: 502 EADVGMWSSILRGCVAHG 519
              V  W++++ G   +G
Sbjct: 413 RTHVS-WNAMILGYAQNG 429



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/366 (18%), Positives = 140/366 (38%), Gaps = 72/366 (19%)

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A +L  C+S+  L    Q+     K G+ ++ +  + L+  +SK G              
Sbjct: 53  AVLLELCTSMKELH---QIIPLVIKNGLYNEHLFQTKLVSLFSKYG-------------- 95

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                             I +A  +F  + +K    +++M+ G ++N S   AL   C M
Sbjct: 96  -----------------SINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM 138

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
              D++   ++   ++  C + + L+ G+++  ++      ++    T +V+ Y KC   
Sbjct: 139 RYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQI 198

Query: 418 ------------------------------GYDALALFNEMRNTGVKPTIITFTAILSAC 447
                                            AL L   M++ G +P  IT   +L A 
Sbjct: 199 DDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAA 258

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              GL+  G K       +      +   + + D++++ G +  A  + + M  +  V  
Sbjct: 259 ADVGLLMVG-KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD-QKTVVS 316

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
           W+S++ G V +G+      V E+M+E  +DP        L +  A  G+ E+   +   +
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHAC-ADLGDLERGKFVHKFV 375

Query: 566 REKHVG 571
            + ++G
Sbjct: 376 DQLNLG 381


>gi|225459473|ref|XP_002284396.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Vitis vinifera]
          Length = 690

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 196/621 (31%), Positives = 308/621 (49%), Gaps = 99/621 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  GK +H    +  +   T+ + N LL MY++CG+ + A  +FD++   
Sbjct: 111 VLKACGLVGDLESGKLIHGRVFRANLGFDTV-LMNTLLDMYVKCGSLSSARKVFDDILCP 169

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KADLAALEYGKQIHS 129
           +  SWN MI G+ K G  E+++ LF  MP+ +  SWN +I+GF  K  L AL +   +H 
Sbjct: 170 SSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSIIAGFGCKESLGALRFVCMMHR 229

Query: 130 HIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD-----------FCLSAL 177
             L ++G  F   L +        CG F    Q+L M+K+              F  SAL
Sbjct: 230 KGLKLDGFTFSCALKT--------CGCF----QLLVMVKQIHCYVNKSGFGSCCFTASAL 277

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSV------MWNSMISGYISNNEDTEALLLFHKMRRN 231
           +  Y+NC ++++A ++FD  +  S+       +WNSM+SGY+ N +++ A+ L  ++   
Sbjct: 278 VDSYSNCNELDEAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIHSL 337

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           G   D+ T  S L  C +L     G QV G A   G   D +V S L+D Y+  G     
Sbjct: 338 GAHVDSFTFGSALKVCINLQNFRLGLQVQGLAVTSGYELDYVVGSILIDLYANDG----- 392

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
                                     +I+DA  +F  +P K ++ W+S+I   ++ G   
Sbjct: 393 --------------------------KIKDALRLFYRLPEKDIVVWSSLISWCTKMGLNS 426

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
               LF +M  LD+ +D+F ++SV+ AC+++  L  G+QV +     G +S++I  TSL+
Sbjct: 427 LVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLI 486

Query: 412 DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
           D Y KCG                                  +A+  F EM   G+KP  I
Sbjct: 487 DLYAKCGEIEDGLALFYCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIELGLKPNEI 546

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TF  +LSAC H GLV+E    F  MK +Y ++P IEHY C+V+L ++AGC  EA  LI +
Sbjct: 547 TFLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHYYCIVELLSQAGCFKEAEELIAE 606

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MPFE D  +W+S+L  C  H    L   +AER++   PE+    + LS+++AT   W+ S
Sbjct: 607 MPFEPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSILVTLSNVYATLEMWDDS 666

Query: 559 SLIRDIMREKHVG-KLPGCSW 578
             +R+++  K VG K  G SW
Sbjct: 667 RKMREVI--KKVGMKEAGKSW 685



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 156/605 (25%), Positives = 258/605 (42%), Gaps = 78/605 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +++ C    +   G+ LH H +K G+ N     AN LL MY+      DA  LFDE 
Sbjct: 6   IVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVF-FANNLLAMYVDISLLKDARRLFDET 64

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKAD--LAALEYG 124
             RN  +W  MI  +   G  + +L+ +  ++  K++     L S   KA   +  LE G
Sbjct: 65  LERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESG 124

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K IH  +    L FD+VL ++L+++Y KCG  +SA +V + +  P     + +ISGY   
Sbjct: 125 KLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKE 184

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G M +A  +F +  +  +V WNS+I+G+    E   AL     M R G+  D  T +  L
Sbjct: 185 GLMEEAVNLFYQMPEPDTVSWNSIIAGF-GCKESLGALRFVCMMHRKGLKLDGFTFSCAL 243

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
             C     L   KQ+H +  K G       ASAL+D+YS      +A K+F E       
Sbjct: 244 KTCGCFQLLVMVKQIHCYVNKSGFGSCCFTASALVDSYSNCNELDEAIKMFDE------- 296

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                   YS C     +  I   +P      WNSM+ G   N     A++L   ++ L 
Sbjct: 297 --------YSCC-----SASILDCLP-----LWNSMLSGYVVNEQNSAAINLVSQIHSLG 338

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDAL 422
             +D F+  S +  C N+ +  LG QV       G + D ++ + L+D Y   G   DAL
Sbjct: 339 AHVDSFTFGSALKVCINLQNFRLGLQVQGLAVTSGYELDYVVGSILIDLYANDGKIKDAL 398

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY------ 476
            LF  +     +  I+ +++++S C   GL       F   +   ++D E++ +      
Sbjct: 399 RLFYRLP----EKDIVVWSSLISWCTKMGL---NSLVFSLFRDMVNLDIEVDQFIISSVL 451

Query: 477 -------------------------------SCMVDLFARAGCLNEAVNLIEQMPFEADV 505
                                          + ++DL+A+ G + + + L      E D 
Sbjct: 452 KACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAKCGEIEDGLALFYCTS-ERDT 510

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELD-PENACAYIQLSSIFATSGEWEKSSLIRDI 564
             ++ I+ GC  +G         + MIEL    N   ++ + S    +G  E++  I   
Sbjct: 511 VCYTGIIMGCGQNGRAMEAVGFFQEMIELGLKPNEITFLGVLSACRHAGLVEEAWTIFKY 570

Query: 565 MREKH 569
           M+ ++
Sbjct: 571 MKTEY 575



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 110/279 (39%), Gaps = 69/279 (24%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D   + SV+  C       HG+ +H H  K+GV +DV  A+ LL  Y    +  DA +LF
Sbjct: 2   DLHRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLF 61

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            E    +     TMI+ YSS GR + A   +  M               S++ +P     
Sbjct: 62  DETLERNVATWTTMISAYSSSGRPDTALKFYVQMLE-------------SKSETP----- 103

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
                       + F  ++V+ AC  +  LE G+ +  RV    L  D ++  +L+D Y 
Sbjct: 104 ------------NGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDMYV 151

Query: 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
           KCG                                  +   +K FD +     + P    
Sbjct: 152 KCGS---------------------------------LSSARKVFDDI-----LCPSSTS 173

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           ++ M+  + + G + EAVNL  QMP E D   W+SI+ G
Sbjct: 174 WNTMISGYGKEGLMEEAVNLFYQMP-EPDTVSWNSIIAG 211



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 1   MDTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +D  +D   ++ +L++C++   +  GKQ+H   +K G  +  + + + L+ +Y +CG   
Sbjct: 438 LDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTS-LIDLYAKCGEIE 496

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           D L LF     R+   +  +I G  + G   +++  F  M +
Sbjct: 497 DGLALFYCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIE 538


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 182/611 (29%), Positives = 303/611 (49%), Gaps = 108/611 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEM 67
           A LLQ+C    + + G Q+H H +K G+      + N LL +Y + G    +   +FD +
Sbjct: 63  ASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF-VGNSLLTLYFKLGTDFPETRKVFDGL 121

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             ++  SW +MI G++++G    SL+LF  M     + N F+ + +I   A ++L  L+ 
Sbjct: 122 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIK--ACSELGDLKL 179

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+  H  +L  G D + V+ S+L++++G+                              N
Sbjct: 180 GRIFHGVVLGRGFDSNYVIASALIDMHGR------------------------------N 209

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLAS 242
           C  ++DAR++FD   +  ++ W S+IS    N+   EAL  F+ M+R+ G+  D  T  +
Sbjct: 210 CA-LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGT 268

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL+AC +LG L+ GK+VH      G   +V+V S+L+D Y K                  
Sbjct: 269 VLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGK------------------ 310

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG + +++ IF  MP K+ +SW++++ G  QNG     + +F  M K
Sbjct: 311 -------------CGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK 357

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
           +DL    +   +++  CA ++++  G++V  +    G   D I+ ++LVD Y KCG    
Sbjct: 358 VDL----YCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEY 413

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +AL +FN+M   G+KP  I+F  IL AC H
Sbjct: 414 AQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSH 473

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV EG+++F +M   Y I   IEHYSCMVDL  RAG L EA  LIE   F  D  +W+
Sbjct: 474 RGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWA 533

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           ++L  C    +  +  ++A+R++EL+P+   +Y+ L++++   G W  +  IR +M+++ 
Sbjct: 534 ALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRG 593

Query: 570 VGKLPGCSWAD 580
           V K+PG SW +
Sbjct: 594 VNKMPGKSWIE 604


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 185/592 (31%), Positives = 288/592 (48%), Gaps = 80/592 (13%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAA 120
           LFD +PR      +  +    +       LQ F+ M +K  +  +  +    K  A  A+
Sbjct: 75  LFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTAS 134

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              G+Q+H H LV GL  D  + ++LV+ Y K GD  SA  V + M   D   ++ LI+G
Sbjct: 135 SCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITG 194

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+  G ++ ARR+FD     +S  WNSMI+ Y    E  EAL LF +M   G   +A T+
Sbjct: 195 YSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITI 254

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SV S C+  G L+ GK+V                                  L  E  +
Sbjct: 255 TSVFSICAKSGDLDTGKRVR--------------------------------DLIGEDDL 282

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + I+   ++ +Y  C  I+DA+  F  M  + +++W++MI G +QNG P+E+L+LF  M
Sbjct: 283 QNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERM 342

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
              D R ++ +L  VISACA + S EL EQ+        L     + ++L+D Y +CG+ 
Sbjct: 343 KATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHV 402

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           DA++L+ +M   GV+P  ITF A+L+AC
Sbjct: 403 GRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAAC 462

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV +G  +F+ MK ++ + P++EH +C+VDL  ++G L EA   I  M  E +  +
Sbjct: 463 THAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVI 522

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W+++L  C AH D  L +  + +++ ++P+N+  Y+ LS+I+A +G W  +  IRD+MR 
Sbjct: 523 WTTLLSSCRAHADVELAKLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRS 582

Query: 568 KHVGKLPGCSWA--DGIAFNCWFLDTMFLQLANFDEIKQHQSADFCDYIHGF 617
           K+V KL   SW   DG        DT              +SA+  D IHG 
Sbjct: 583 KNVQKLSAYSWIKLDGEVHKFLVQDTY-----------HPRSAEIYDVIHGL 623



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 211/443 (47%), Gaps = 43/443 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + +SC    S   G+Q+H H L +G+L     +   L+  Y + G+   A+ +FDEMP +
Sbjct: 125 VFKSCALTASSCQGRQVHCHALVRGLLGDVF-VLTALVDFYAKNGDMESAVSVFDEMPVK 183

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +    N +I G+ K G  +K+ +LF+ M ++   SWN +I+ +A            +   
Sbjct: 184 DPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHG--GEFREALTLFDR 241

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKM 187
           +L  G   +++  +S+ ++  K GD ++  +V +++ E D       +AL+  Y  C  +
Sbjct: 242 MLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAI 301

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           +DARR FDR +    V W++MI+GY  N    E+L LF +M+      +  TL  V+SAC
Sbjct: 302 DDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISAC 361

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + LG  E  +Q+  +A    +     + SAL+D Y++ G    A  +FS ++    I  N
Sbjct: 362 AQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWN 421

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           +MI                                GL+ NG   +A+ L+  M +  ++ 
Sbjct: 422 SMIR-------------------------------GLAMNGFAEDAISLYEKMAENGVQP 450

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCG--YDALAL 424
           ++ +  ++++AC +   ++ G   F  +    L S Q+   + +VD  CK G  ++A   
Sbjct: 451 NEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKF 510

Query: 425 FNEMRNTGVKPTIITFTAILSAC 447
             +M    V+P  + +T +LS+C
Sbjct: 511 ICDME---VEPNAVIWTTLLSSC 530



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 191/422 (45%), Gaps = 51/422 (12%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR +FD     +  + ++ +S     +   + L  F  M R G    +  +  V  +C+ 
Sbjct: 72  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 131

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
                 G+QVH HA   G++ DV V +AL+D Y+K G    A  +F E+ V D I +N +
Sbjct: 132 TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCL 191

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT YS  G ++ A+ +F  M  ++  SWNSMI   +  G   EAL LF  M     R + 
Sbjct: 192 ITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNA 251

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQ--IISTSLVDFYCKC---------- 417
            ++ SV S CA    L+ G++V     +IG D  Q  I+ T+L++ Y KC          
Sbjct: 252 ITITSVFSICAKSGDLDTGKRVR---DLIGEDDLQNVIVHTALMEMYVKCRAIDDARREF 308

Query: 418 ----------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCG--- 451
                           GY       ++L LF  M+ T  +P  +T   ++SAC   G   
Sbjct: 309 DRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDE 368

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHY-SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           LV++   + +  +      P   +  S ++D++ R G +  A ++  +M  +  V  W+S
Sbjct: 369 LVEQIGNYAENQRL-----PLTSYLGSALIDMYTRCGHVGRARSVFSRME-QKGVITWNS 422

Query: 511 ILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           ++RG   +G       + E+M E  + P N   ++ L +    +G  ++     + M+ +
Sbjct: 423 MIRGLAMNGFAEDAISLYEKMAENGVQP-NEITFVALLAACTHAGLVDQGMAFFEEMKRE 481

Query: 569 HV 570
           H+
Sbjct: 482 HL 483



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 20/262 (7%)

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
            ++S       A+++F  +P  +    ++ +  LS+  S  + L  F +M++    +   
Sbjct: 61  AIFSDATTSRAARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSG 120

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEM 428
            +  V  +CA  +S   G QV     + GL  D  + T+LVDFY K G    A+++F+EM
Sbjct: 121 CVPLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEM 180

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488
               VK   I    +++     G V + ++ FD M+ +         ++ M+  +A  G 
Sbjct: 181 ---PVKDP-IPINCLITGYSKAGDVDKARRLFDGMERRTSAS-----WNSMIACYAHGGE 231

Query: 489 LNEAVNLIEQMPFEA---DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545
             EA+ L ++M  E    +    +S+   C   GD   G++V + + E D +N   +  L
Sbjct: 232 FREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTAL 291

Query: 546 SSIFATSGEWEKSSLIRDIMRE 567
             ++       K   I D  RE
Sbjct: 292 MEMYV------KCRAIDDARRE 307


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 195/625 (31%), Positives = 313/625 (50%), Gaps = 77/625 (12%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L SC    S  +GKQLH H +K G  N+   +  +LLQMY R  +  +A  +FD MP
Sbjct: 55  ASILDSCG---SPILGKQLHAHSIKSG-FNAHEFVTTKLLQMYARNCSFENACHVFDTMP 110

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQ-----LFNVMPQKNDFSWNMLISGFAKADLAALEY 123
            RN  SW A++  ++++G  E++       L+  +  + DF    ++       L A+E 
Sbjct: 111 LRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKIC-CGLCAVEL 169

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+H   L +                   GD  SA ++ +          +A+I+GY  
Sbjct: 170 GRQMHGMALKHD------------------GDMKSAFEMFSRFSRKSAASYNAMIAGYWE 211

Query: 184 CGKMNDARRVFDRT----TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            G +  A+ +FDR          + WNSMISGY+  +   EA  LF  + + G+  D+ T
Sbjct: 212 NGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFT 271

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L SVL+ C+ +  +  GK+ H  A   G+  + IV  AL++ YSK      A   F  + 
Sbjct: 272 LGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVS 331

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEA 353
             D    N +I+ Y+ C + E  + + + M      PN  + +WN +I G  +N     A
Sbjct: 332 ERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPN--VYTWNGIIAGYVENKQYDSA 389

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           + LF  M   +LR D +++  +++AC+ +++++ G+QV A     G DSD  I  +LVD 
Sbjct: 390 MQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDM 449

Query: 414 YCKC---------------------------------GYDALALFNEMRNTGVKPTIITF 440
           Y KC                                 G + +ALF  M  + V+P  +TF
Sbjct: 450 YAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTF 509

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
            A+LS+C H G ++ G +   A+   Y++ P ++HY+CMVDL +RAG L EA  LI+ +P
Sbjct: 510 LAVLSSCVHAGSLEIGHECL-ALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLP 568

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            EAD   W+++L GC  H +  LG   AE++IEL+P N   Y+ L++++A++G+W   + 
Sbjct: 569 TEADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQ 628

Query: 561 IRDIMREKHVGKLPGCSW---ADGI 582
            R +M++  + K PGCSW    DGI
Sbjct: 629 TRQLMKDMGMQKRPGCSWIEDRDGI 653



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 160/374 (42%), Gaps = 101/374 (27%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C    SI  GK+ H   + +G+ ++++ +   L++MY +C +   A + FD +
Sbjct: 272 LGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSI-VGGALVEMYSKCQDIVAAQMAFDGV 330

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK-------- 115
             R+  +WNA+I G+ +    EK  +L   M     + N ++WN +I+G+ +        
Sbjct: 331 SERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAM 390

Query: 116 -------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
                                    + LA ++ GKQ+H++ +  G D D  +G++LV++ 
Sbjct: 391 QLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDM- 449

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
                                         YA CG +    RV++  ++ + V  N+M++
Sbjct: 450 ------------------------------YAKCGDVKHCYRVYNMISNPNLVSHNAMLT 479

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
            Y  +    E + LF +M  + V  D  T  +VLS+C   G LE      GH C      
Sbjct: 480 AYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLE-----IGHECL----- 529

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
                 AL+  Y+   MPS        LK Y       M+ + S  G++ +A  + + +P
Sbjct: 530 ------ALMVAYNV--MPS--------LKHY-----TCMVDLLSRAGQLYEAYELIKNLP 568

Query: 331 NKS-LISWNSMIVG 343
            ++  ++WN+++ G
Sbjct: 569 TEADAVTWNALLGG 582


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 174/607 (28%), Positives = 303/607 (49%), Gaps = 102/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C++  +++ G+++H+  ++ G+ N+   + N L+ MY +CG+  DA  +FD M  R
Sbjct: 151 ILSACSSPAALNWGREVHVRVMEAGLANNAT-VGNALISMYAKCGSVRDARRVFDAMASR 209

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  SW  +   + + G+ ++SL+ ++ M Q+    +  ++  ++S  A   LAALE GKQ
Sbjct: 210 DEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLS--ACGSLAALEKGKQ 267

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH+ I+ +    D  + ++L  +Y KC                               G 
Sbjct: 268 IHAQIVESEHHSDVRVSTALTKMYIKC-------------------------------GA 296

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + DAR VF+   +   + WN+MI G + + +  EA  +FH+M +  V  D  T  ++LSA
Sbjct: 297 VKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSA 356

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+  G L  GK++H  A K G++ DV   +AL++ YSK G   DA ++F  +   D +  
Sbjct: 357 CARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSW 416

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
             ++  Y+ CG++                               +E+   F  M +  + 
Sbjct: 417 TALVGGYADCGQV-------------------------------VESFSTFKKMLQQGVE 445

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------- 417
            +K +   V+ AC+N  +L+ G+++ A V   G+ +D  ++ +L+  Y KC         
Sbjct: 446 ANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRV 505

Query: 418 ------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                   G +AL  F  M++  ++P   TF  ++SAC    LV
Sbjct: 506 SEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLV 565

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG++ F +M+  Y I P  +HY+CMVD+ ARAG L EA ++I  MPF+    MW ++L 
Sbjct: 566 EEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLA 625

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C AHG+  +G + AE+ ++L+P+NA  Y+ LS I+A +G W   + +R +M+E+ V K 
Sbjct: 626 ACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKE 685

Query: 574 PGCSWAD 580
           PG SW +
Sbjct: 686 PGRSWIE 692



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 204/449 (45%), Gaps = 101/449 (22%)

Query: 100 QKNDFSWNMLISGFAKA-DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
           Q + + +  L+    KA DLA    GKQ+H HIL  G+                      
Sbjct: 41  QVDSYDYVKLLQSCVKAKDLAV---GKQVHEHILRFGM---------------------- 75

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
                    +P+ + ++ L+  Y +CG +N+ARR+FD+ ++ S V WN MISGY      
Sbjct: 76  ---------KPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLG 126

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            EA  LF  M++ G+  D  T  S+LSACSS   L  G++VH    + G+ ++  V +AL
Sbjct: 127 QEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNAL 186

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +  Y+K G   DA ++F                                 M ++  +SW 
Sbjct: 187 ISMYAKCGSVRDARRVFD-------------------------------AMASRDEVSWT 215

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           ++    +++G   E+L  +  M +  +R  + +  +V+SAC ++++LE G+Q+ A++   
Sbjct: 216 TLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVES 275

Query: 399 GLDSDQIISTSLVDFYCKCGY---------------------------------DALALF 425
              SD  +ST+L   Y KCG                                  +A  +F
Sbjct: 276 EHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMF 335

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
           + M    V P  +T+ AILSAC   G +  G++   A   +  +  ++   + +++++++
Sbjct: 336 HRMLKECVAPDRVTYLAILSACARPGGLACGKE-IHARAVKDGLVSDVRFGNALINMYSK 394

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           AG + +A  + ++MP + DV  W++++ G
Sbjct: 395 AGSMKDARQVFDRMP-KRDVVSWTALVGG 422



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 160/365 (43%), Gaps = 69/365 (18%)

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           +   + + G   D+     +L +C     L  GKQVH H  + G+  +V +         
Sbjct: 31  VLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYI--------- 81

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
                                 +NT++ +Y  CG + +A+ +F    NKS++SWN MI G
Sbjct: 82  ----------------------INTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISG 119

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
            +  G   EA +LF  M +  L  DKF+  S++SAC++ ++L  G +V  RV   GL ++
Sbjct: 120 YAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANN 179

Query: 404 QIISTSLVDFYCKCG--------YDALA-------------------------LFNEMRN 430
             +  +L+  Y KCG        +DA+A                          ++ M  
Sbjct: 180 ATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ 239

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
            GV+P+ IT+  +LSAC     +++G++     ++ ++H D  +   + +  ++ + G +
Sbjct: 240 EGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVS--TALTKMYIKCGAV 297

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI-ELDPENACAYIQLSSI 548
            +A  + E +P   DV  W++++ G V  G       +  RM+ E    +   Y+ + S 
Sbjct: 298 KDAREVFECLP-NRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSA 356

Query: 549 FATSG 553
            A  G
Sbjct: 357 CARPG 361



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 121/259 (46%), Gaps = 39/259 (15%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ YLA +L +C     +  GK++H   +K G++ S +   N L+ MY + G+  DA  +
Sbjct: 347 RVTYLA-ILSACARPGGLACGKEIHARAVKDGLV-SDVRFGNALINMYSKAGSMKDARQV 404

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
           FD MP+R+  SW A++ G+   G   +S   F  M Q+    N  ++  ++   A ++  
Sbjct: 405 FDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLK--ACSNPV 462

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL++GK+IH+ ++  G+  D  + ++L+++Y KCG    A +V   M   D    + LI 
Sbjct: 463 ALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIG 522

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           G A                                N    EAL  F  M+   +  +A+T
Sbjct: 523 GLAQ-------------------------------NGRGLEALQKFEVMKSEEMRPNATT 551

Query: 240 LASVLSACSSLGFLEHGKQ 258
             +V+SAC     +E G++
Sbjct: 552 FVNVMSACRVRNLVEEGRR 570



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 40/217 (18%)

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           D+   +++   ++D +    ++ +C     L +G+QV   +   G+  +  I  +L+  Y
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 415 CKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
             CG   +A  LF++  N     +++++  ++S   H GL   GQ+ F            
Sbjct: 90  VHCGSVNEARRLFDKFSNK----SVVSWNVMISGYAHRGL---GQEAF------------ 130

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
                   +LF           L++Q   E D   + SIL  C +      GR+V  R++
Sbjct: 131 --------NLF----------TLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVM 172

Query: 533 ELD-PENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           E     NA     L S++A  G    +  + D M  +
Sbjct: 173 EAGLANNATVGNALISMYAKCGSVRDARRVFDAMASR 209


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 184/611 (30%), Positives = 299/611 (48%), Gaps = 106/611 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   +++C     +  G+Q+H H LK     S L + N L+ MY + G   D  +LF+ +
Sbjct: 155 LGSAVRACTELGDVGTGRQVHAHALKSE-RGSDLIVQNALVTMYSKNGLVDDGFMLFERI 213

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGF-AKADLAAL 121
             ++  SW ++I GF + G + ++LQ+F  M        N+F +    S F A   + + 
Sbjct: 214 KDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFG---SAFRACGAVGSW 270

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           EYG+QIH   +   LD D  +G SL ++Y +  + +SA      ++ PD      L+S  
Sbjct: 271 EYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPD------LVS-- 322

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
                                  WNS+++ Y      +EAL+LF +MR +G+  D  T+ 
Sbjct: 323 -----------------------WNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVR 359

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            +L AC     L HG+ +H +  K+G+  DV V                           
Sbjct: 360 GLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVC-------------------------- 393

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                N+++++Y+ C  +  A  +F  + ++ +++WNS++   +Q+  P E L LF  +N
Sbjct: 394 -----NSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLN 448

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
           K +  +D+ SL +V+SA A +   E+ +QV A     GL  D+++S +L+D Y KCG   
Sbjct: 449 KSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLD 508

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +AL LF+ MR+ G++P  +TF  +L+AC
Sbjct: 509 DAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTAC 568

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              G V EG  ++  M+ +Y I P  EH SC+VDL ARAG L EA N I+QMPFE D+ M
Sbjct: 569 SRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIM 628

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L     H D  +G++ AE ++ +DP ++ AY+ L +I+A SG W + + ++  MR 
Sbjct: 629 WKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRT 688

Query: 568 KHVGKLPGCSW 578
             V K PG SW
Sbjct: 689 SGVKKSPGKSW 699



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 123/488 (25%), Positives = 203/488 (41%), Gaps = 107/488 (21%)

Query: 118 LAALEYGKQIHSHILVNG-------LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 170
           L +L  G+++H H++ +        L  ++VLG+ L+ +YG+C               PD
Sbjct: 57  LRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCA-------------APD 103

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
                              AR+VFD     + V W S+I+ ++ N    +AL LF  M R
Sbjct: 104 S------------------ARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLR 145

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
           +G   D   L S + AC+ LG +  G+QVH HA K     D+IV +AL+  YSK G+  D
Sbjct: 146 SGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDD 205

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
              LF  +K  D I          S G I                     I G +Q G  
Sbjct: 206 GFMLFERIKDKDLI----------SWGSI---------------------IAGFAQQGFE 234

Query: 351 IEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           +EAL +F  M  +     ++F   S   AC  + S E GEQ+        LD D  +  S
Sbjct: 235 MEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCS 294

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           L D Y +                                    +AL LF+EMR++G++P 
Sbjct: 295 LSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPD 354

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            IT   +L AC     +  G +   +   +  +D ++   + ++ ++AR   L+ A+++ 
Sbjct: 355 GITVRGLLCACVGRDALYHG-RLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVF 413

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
            ++  + DV  W+SIL  C  H       K+   + + +P  +   I L+++ + S E  
Sbjct: 414 HEIK-DQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEP--SLDRISLNNVLSASAELG 470

Query: 557 KSSLIRDI 564
              +++ +
Sbjct: 471 YFEMVKQV 478



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 30/238 (12%)

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A+++SACS L  L  G++VH H          +VAS+           S   +L      
Sbjct: 48  AALVSACSRLRSLPQGRRVHRH----------LVASS---------SSSPDAQLAG---- 84

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            +T+L N +IT+Y  C   + A+ +F  MP ++ +SW S+I    QNG   +AL LF +M
Sbjct: 85  -NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSM 143

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
            +     D+F+L S + AC  +  +  G QV A        SD I+  +LV  Y K G  
Sbjct: 144 LRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLV 203

Query: 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
            D   LF  +++      +I++ +I++     G   E  + F  M  +    P   H+
Sbjct: 204 DDGFMLFERIKDK----DLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHF 257


>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 767

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 184/561 (32%), Positives = 297/561 (52%), Gaps = 13/561 (2%)

Query: 27  LHLH-FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           L LH F +K        +   +L MY++CG    A  +F   P  + F WN+MI G+ K 
Sbjct: 147 LQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKY 206

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLIS-----GFAKADLAA-LEYGKQIHSHILVNGLDFD 139
           G  +K+L+LF  MP+++  SWN +IS     GF    L   LE   Q       N + + 
Sbjct: 207 GSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQ---GFRPNSMTYA 263

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
           SVL S+  ++Y      +   +++ M    D +    LI  YA CG++  AR+VFD  T+
Sbjct: 264 SVL-SACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTE 322

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            ++V W S+I G        EAL+LF++MR   V  D  TLA+VL  C S   +  G+Q+
Sbjct: 323 HNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQL 382

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H H    G+   V VA+AL+  Y+K G    A   F  + + D I    MIT +S  G +
Sbjct: 383 HAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDV 442

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           E A+  F  MP +++ISWNSM+    Q G   E L ++  M +  ++ D  + ++ ISAC
Sbjct: 443 EKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISAC 502

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIIT 439
           A+++ L LG Q+ A+   +G  S+  ++ S+V  Y +CG    A   +M ++ V   +++
Sbjct: 503 ADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEA--QKMFSSIVMKNLVS 560

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           + A+++     G  ++  + F+ M    ++  +I + S + DL  RAG L +A NLI QM
Sbjct: 561 WNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSDLLGRAGQLEQAKNLINQM 620

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           PF+ +  +W ++L  C  HG+  L     + ++ELD E   +Y  L++I++ SG+ +  +
Sbjct: 621 PFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVT 680

Query: 560 LIRDIMREKHVGKLPGCSWAD 580
            +R +MR+K V K PGCSW +
Sbjct: 681 NVRKLMRDKGVRKNPGCSWIE 701



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 148/535 (27%), Positives = 246/535 (45%), Gaps = 81/535 (15%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           ++ C +  SI + ++LH   +  G L S++ + N LL MY  CG  +DA  +F  +   N
Sbjct: 1   MKECASLRSIPIARKLHAQLIFMG-LKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPN 59

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF------------------ 113
            +SWN MI GF   G   ++ +LF  MP+++  SWN ++SG+                  
Sbjct: 60  VYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSMVR 119

Query: 114 ----------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
                           A   L  L+   Q+H          D+ + +S++++Y KCG  +
Sbjct: 120 DCCCVPDPFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMD 179

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
            A +V      P  FC +++I GY+  G +  A  +F +  +  +V WN+MIS    +  
Sbjct: 180 FAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGF 239

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
             E L  F +M   G   ++ T ASVLSAC+S+  LE G  +H    ++    DV     
Sbjct: 240 GAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCG 299

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           L+D Y+K                               CGR+E A+ +F  +   + +SW
Sbjct: 300 LIDMYAK-------------------------------CGRLESARQVFDGLTEHNAVSW 328

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
            S+I G++Q G   EAL LF  M ++ +  D+F+LA+V+  C +   + +GEQ+ A    
Sbjct: 329 TSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTIT 388

Query: 398 IGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPT--IITFTAILSACDHCGLV 453
            GLDS   ++ +LV  Y KCG  + A   F  M      P   II++TA+++A    G V
Sbjct: 389 RGLDSSVPVANALVTMYAKCGDVWKANHAFELM------PIRDIISWTAMITAFSQAGDV 442

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           ++ +++FD M      +  +  ++ M+  + + G   E + +  QM  E     W
Sbjct: 443 EKAREYFDKMP-----ERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDW 492



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 222/476 (46%), Gaps = 39/476 (8%)

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           A L ++   +++H+ ++  GL     L + L+N+Y  CG  + A +V   +  P+ +  +
Sbjct: 5   ASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWN 64

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-L 234
            +ISG+A+ G+M +A ++F++  +  SV WNSM+SGY  N E    + +F  M R+   +
Sbjct: 65  TMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSMVRDCCCV 124

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D  + + V+ A  SLG+L+   Q+HG A K     D  V +++LD Y K G    A K+
Sbjct: 125 PDPFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKV 184

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F           N+MI  YS  G ++ A  +F  MP +  +SWN+MI  LSQ+G   E L
Sbjct: 185 FCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETL 244

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           + F  M     R +  + ASV+SAC +I  LE G  + AR+  +    D      L+D Y
Sbjct: 245 NTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMY 304

Query: 415 CKCGY---------------------------------DALALFNEMRNTGVKPTIITFT 441
            KCG                                  +AL LFN+MR   V     T  
Sbjct: 305 AKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLA 364

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            +L  C     +  G++   A      +D  +   + +V ++A+ G + +A +  E MP 
Sbjct: 365 TVLGVCLSQKDISIGEQ-LHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPI 423

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
             D+  W++++      GD    R+  ++M E    N  ++  + + +   G WE+
Sbjct: 424 R-DIISWTAMITAFSQAGDVEKAREYFDKMPE---RNVISWNSMLATYMQRGYWEE 475



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 166/335 (49%), Gaps = 14/335 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C +   I +G+QLH H + +G L+S++P+AN L+ MY +CG+   A   F+ M
Sbjct: 363 LATVLGVCLSQKDISIGEQLHAHTITRG-LDSSVPVANALVTMYAKCGDVWKANHAFELM 421

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
           P R+  SW AMI  F + G  EK+ + F+ MP++N  SWN +++ + +      E G ++
Sbjct: 422 PIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQR--GYWEEGLKV 479

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYAN 183
           +  +L  G+  D +  S+ ++           NQ+L   ++     +    +++++ Y+ 
Sbjct: 480 YIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSR 539

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG++ +A+++F      + V WN+M++GY  N +  + + +F KM   G + D  +  SV
Sbjct: 540 CGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSV 599

Query: 244 LS-ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELK 299
           LS      G LE  K +     ++    +  +  ALL      G   +   A K   EL 
Sbjct: 600 LSDLLGRAGQLEQAKNLIN---QMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELD 656

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
                    +  +YS  G+I+   ++ + M +K +
Sbjct: 657 AEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGV 691



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 154/329 (46%), Gaps = 12/329 (3%)

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +  C+SL  +   +++H     +G+   + + + LL+ YS  G+ SDA ++F  +   + 
Sbjct: 1   MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 60

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK- 362
              NTMI+ ++  G++ +A+ +F  MP +  +SWNSM+ G   NG     + +F +M + 
Sbjct: 61  YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSMVRD 120

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDAL 422
                D FS + V+ A  ++  L+L  Q+           D  + TS++D Y KCG  A+
Sbjct: 121 CCCVPDPFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCG--AM 178

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
               ++      P++  + +++      G VK+  + F  M      + +   ++ M+ +
Sbjct: 179 DFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMP-----ERDTVSWNTMISI 233

Query: 483 FARAGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP-EN 538
            ++ G   E +N   +M    F  +   ++S+L  C +  D   G  +  R++ ++P  +
Sbjct: 234 LSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLD 293

Query: 539 ACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
             A   L  ++A  G  E +  + D + E
Sbjct: 294 VYAGCGLIDMYAKCGRLESARQVFDGLTE 322


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 193/612 (31%), Positives = 312/612 (50%), Gaps = 85/612 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFDEMP 68
           LL +C T  ++   KQ+H   +K G+ N+   ++ +L++       G+ + AL LF  + 
Sbjct: 34  LLSNCKTLQTL---KQIHSQIIKTGLHNTHFALS-KLIEFCAVSPHGDLSYALSLFKTIR 89

Query: 69  RRNCFSWNAMIEG-------FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL 121
             N   WN MI G       F+ L   E  + + +   + N++++  +     K  +   
Sbjct: 90  NPNHVIWNHMIRGLSSSESPFLAL---EYYVHMISSGTEPNEYTFPSIFKSCTK--IRGA 144

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             GKQ+H+H+L  GL+ ++ + +SL+N+Y + G+  +A  V +     D    +ALI+GY
Sbjct: 145 HEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGY 204

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           A+ G +++AR +FD       V WN+MISGY  +    EA+  F +MRR  V  + ST+ 
Sbjct: 205 ASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTML 264

Query: 242 SVLSACSSLGF-LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           SVLSAC+  G  L+ G  V         I+D             RG+ S+          
Sbjct: 265 SVLSACAQSGSSLQLGNWVRS------WIED-------------RGLGSN---------- 295

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
               L+N +I +Y  CG +E+A ++F  + +K+++SWN MI G +      EAL LF  M
Sbjct: 296 --IRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRM 353

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQIISTSLVDFYCKCG 418
            + ++  +  +  S++ ACAN+ +L+LG+ V A V   +  + +   + TSL+D Y KCG
Sbjct: 354 MQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCG 413

Query: 419 --------YD-------------------------ALALFNEMRNTGVKPTIITFTAILS 445
                   +D                         AL LF+ M + G  P  ITF  +L+
Sbjct: 414 DLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLT 473

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GL+  G+++F +M   Y + P++ HY CM+DLF RAG  +EA  L++ M  + D 
Sbjct: 474 ACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDG 533

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +W S+L  C  H    L   VA+ + EL+PEN  AY+ LS+I+A +G WE  + IR  +
Sbjct: 534 AIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRL 593

Query: 566 REKHVGKLPGCS 577
            +  + K+PGCS
Sbjct: 594 NDNRMKKVPGCS 605


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 183/609 (30%), Positives = 308/609 (50%), Gaps = 82/609 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMY---MRCGNPTDALLLFDEM 67
           LL+ C + + +   KQ+H H +K G+  S+ P+  + +  +      G    A  +FD +
Sbjct: 13  LLEKCKSMYQL---KQIHSHTIKMGL--SSDPLFQKRVIAFCCAHESGKMIYARQVFDAI 67

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAAL 121
           P+   F WN MI+G+ ++ H +  + ++      N+ P +  F++  L+ GF +    AL
Sbjct: 68  PQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDR--FTFPFLLKGFTRN--MAL 123

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           +YGK + +H + +G  FDS L                             F   A I  +
Sbjct: 124 QYGKVLLNHAVKHG--FDSNL-----------------------------FVQKAFIHMF 152

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           + C  ++ AR+VFD       V WN M+SGY    +  ++ +LF +M + GV  ++ TL 
Sbjct: 153 SLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLV 212

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            +LSACS L  LE GK ++ +     V  ++I+ + L+D ++  G   +A  +F  +K  
Sbjct: 213 LMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNR 272

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D I   +++T +++ G+I+ A+  F  +P +  +SW +MI G  +    IEAL LF  M 
Sbjct: 273 DVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQ 332

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
             +++ D+F++ S+++ACA++ +LELGE V   +    + +D  +  +L+D Y KCG   
Sbjct: 333 MSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVG 392

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +ALA+F+ M    + P  IT+  +L AC 
Sbjct: 393 KAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACT 452

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H G+V++GQ +F +M  Q+ I P + HY CMVDL  RAG L EA  +I  MP + +  +W
Sbjct: 453 HAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVW 512

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            S+L  C  H +  L    A++++EL+PEN   Y+ L +I+A    WE    +R +M E+
Sbjct: 513 GSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMER 572

Query: 569 HVGKLPGCS 577
            + K PGCS
Sbjct: 573 GIKKTPGCS 581


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 203/684 (29%), Positives = 327/684 (47%), Gaps = 143/684 (20%)

Query: 5    IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
            ++  + +LQ C  H  +  GK +H      GI    + +  +L+ MY+ CG   +   +F
Sbjct: 451  LNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGV-LGAKLVFMYVSCGALREGRRIF 509

Query: 65   DEMPRRN-CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLA 119
            D +   N  F WN M+  + K+G   +S+ LF  M +     N ++++ ++  FA   L 
Sbjct: 510  DHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFAT--LG 567

Query: 120  ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
             +   K+IH  +   G                    F S N V+N           +LI+
Sbjct: 568  RVGECKRIHGCVYKLG--------------------FGSYNTVVN-----------SLIA 596

Query: 180  GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
             Y   G+++ A ++FD   D   V WNSMISG + N     AL  F +M    V  D +T
Sbjct: 597  TYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLAT 656

Query: 240  LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK--------------- 284
            L + ++AC+++G L  G+ +HG   K     +V+  + LLD YSK               
Sbjct: 657  LVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMG 716

Query: 285  ----------------RGMPSDACKLFSELK----------------------------- 299
                             G+  DA +LF E++                             
Sbjct: 717  QKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRD 776

Query: 300  VYDTILLNTM----------ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
            V++ I  N M          + +Y+ CG +E+A  +F  +P K ++SWN+MI G S+N  
Sbjct: 777  VHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSL 836

Query: 350  PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
            P EAL LF  M K + R D  ++A ++ AC ++++LE+G  +   +   G  S+  ++ +
Sbjct: 837  PNEALKLFAEMQK-ESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANA 895

Query: 410  LVDFYCKCGY---------------------------------DALALFNEMRNTGVKPT 436
            L+D Y KCG                                  +A+A F +MR  G+KP 
Sbjct: 896  LIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPD 955

Query: 437  IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
             ITFT+IL AC H GL+ EG  +F++M  + +++P++EHY+CMVDL AR G L++A NLI
Sbjct: 956  EITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLI 1015

Query: 497  EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
            E MP + D  +W ++L GC  H D  L  KVAE + EL+P+NA  Y+ L++I+A + +WE
Sbjct: 1016 ETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWE 1075

Query: 557  KSSLIRDIMREKHVGKLPGCSWAD 580
            +   +R+ + ++ + K PGCSW +
Sbjct: 1076 EVKKLRERIGKRGLKKSPGCSWIE 1099



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/318 (19%), Positives = 122/318 (38%), Gaps = 67/318 (21%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D +  +S+L  C+    L+ GK VH                      S  G+P +     
Sbjct: 450 DLNAYSSILQLCAEHKCLQEGKMVH-------------------SVISSNGIPIEG---- 486

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                   +L   ++ +Y SCG + + + IF   + +  +  WN M+   ++ G   E++
Sbjct: 487 --------VLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESI 538

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LF  M KL +  + ++ + ++   A +  +   +++   V  +G  S   +  SL+  Y
Sbjct: 539 YLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATY 598

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            K G                                 + AL  F +M    V   + T  
Sbjct: 599 FKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLV 658

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
             ++AC + G +  G+        +     E+   + ++D++++ G LN+A+   E+M  
Sbjct: 659 NSVAACANVGSLSLGRA-LHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMG- 716

Query: 502 EADVGMWSSILRGCVAHG 519
           +  V  W+S++   V  G
Sbjct: 717 QKTVVSWTSLIAAYVREG 734


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 179/610 (29%), Positives = 305/610 (50%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C++  ++ VGKQ H + +K G ++S + +   LL +Y++C +   A   F   
Sbjct: 375 VASLLSACSSVGALLVGKQFHSYAIKAG-MSSDIILEGALLDLYVKCSDIKTAHEFFLST 433

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
              N   WN M+  +  L +  +S ++F  M     + N F++  ++     + L A++ 
Sbjct: 434 ETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILR--TCSSLRAVDL 491

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH+ +L  G  F+  + S L+++Y                               A 
Sbjct: 492 GEQIHTQVLKTGFQFNVYVSSVLIDMY-------------------------------AK 520

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            GK++ A ++F R  +   V W +MI+GY  + +  EAL LF +M+  G+  D    AS 
Sbjct: 521 LGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASA 580

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +SAC+ +  L  G+Q+H  AC  G  DD+ V +AL                         
Sbjct: 581 ISACAGIQALNQGQQIHAQACVSGYSDDLSVGNAL------------------------- 615

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                 +++Y+ CG++ DA   F  + +K  ISWNS+I G +Q+G   EAL LF  M+K 
Sbjct: 616 ------VSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKA 669

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
              ++ F+    +SA AN+++++LG+Q+ A +   G DS+  +S  L+  Y KCG     
Sbjct: 670 GQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDA 729

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                       + AL+LF +M+  GV P  +TF  +LSAC H 
Sbjct: 730 ERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHV 789

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV EG K+F +M+  + + P+ EHY+C+VDL  R+G L+ A   +E+MP + D  +  +
Sbjct: 790 GLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRT 849

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C+ H +  +G   A  ++EL+P+++  Y+ LS+++A +G+W      R +M+++ V
Sbjct: 850 LLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGV 909

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 910 KKEPGRSWIE 919



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 160/605 (26%), Positives = 261/605 (43%), Gaps = 106/605 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C       VG+QLH   LK+G    T  + N L+ +Y R GN   A  +F+ M
Sbjct: 274 FSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETY-VCNALVTLYSRLGNFIPAEQVFNAM 332

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
            +R+  S+N++I G  + G+ +K+L+LF  M     + +  +   L+S  A + + AL  
Sbjct: 333 LQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLS--ACSSVGALLV 390

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ HS+ +  G+  D +L  +L++LY KC D  +A++                      
Sbjct: 391 GKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHE---------------------- 428

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                     F  T   + V+WN M+  Y   +   E+  +F +M+  G+  +  T  S+
Sbjct: 429 ---------FFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSI 479

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L  CSSL  ++ G+Q+H    K G   +V V+S L+D Y+K G    A K+F  LK  D 
Sbjct: 480 LRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV 539

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           +    MI  Y                               +Q+    EAL+LF  M   
Sbjct: 540 VSWTAMIAGY-------------------------------AQHEKFAEALNLFKEMQDQ 568

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            +  D    AS ISACA I +L  G+Q+ A+  + G   D  +  +LV  Y +CG     
Sbjct: 569 GIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDA 628

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL+LF++M   G +    TF   +SA  + 
Sbjct: 629 YFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANV 688

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
             VK G K   AM  +   D E E  + ++ L+A+ G +++A     +MP + ++  W++
Sbjct: 689 ANVKLG-KQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEIS-WNA 746

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           +L G   HG       + E M +L    N   ++ + S  +  G  ++       MRE H
Sbjct: 747 MLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVH 806

Query: 570 VGKLP 574
            G +P
Sbjct: 807 -GLVP 810



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 137/546 (25%), Positives = 245/546 (44%), Gaps = 105/546 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C +      G +LH   LK G     + +  RL+ +Y+  G+   A+ +FDEMP R
Sbjct: 74  LLDGCLSSGWFSDGWKLHGKILKMGFCAEVV-LCERLMDLYIAFGDLDGAVTVFDEMPVR 132

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
               WN ++  F+      + L LF  M Q+    ++ ++  ++ G    D+      ++
Sbjct: 133 PLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDV-PFHCVEK 191

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH+  + +G +    + + L++LY K G  NSA +V + +++ D                
Sbjct: 192 IHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRD---------------- 235

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                          SV W +M+SG   +  + EA+LLF +M  +GV       +SVLSA
Sbjct: 236 ---------------SVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSA 280

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ + F + G+Q+HG   K G           L+TY                      + 
Sbjct: 281 CTKVEFYKVGEQLHGLVLKQGFS---------LETY----------------------VC 309

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N ++T+YS  G    A+ +F  M  +  +S+NS+I GLSQ G   +AL+LF  M    L+
Sbjct: 310 NALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLK 369

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  ++AS++SAC+++ +L +G+Q  +     G+ SD I+  +L+D Y KC         
Sbjct: 370 PDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEF 429

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     ++  +F +M+  G++P   T+ +IL  C     V
Sbjct: 430 FLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAV 489

Query: 454 KEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
             G++     +K  +  +  +   S ++D++A+ G L+ A+ +  ++  E DV  W++++
Sbjct: 490 DLGEQIHTQVLKTGFQFNVYVS--SVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMI 546

Query: 513 RGCVAH 518
            G   H
Sbjct: 547 AGYAQH 552



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/541 (25%), Positives = 232/541 (42%), Gaps = 114/541 (21%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            H  +++H   +  G  NS L + N L+ +Y + G    A  +FD + +R+  SW AM+ 
Sbjct: 186 FHCVEKIHARTITHGYENS-LFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLS 244

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDF 138
           G  + G +E+++ LF  M     +    + S    A   +   + G+Q+H  +L  G   
Sbjct: 245 GLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSL 304

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           ++ + ++LV LY + G+F  A QV N M + D+   ++LISG +  G  +          
Sbjct: 305 ETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSD---------- 354

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
                                +AL LF KM  + +  D  T+AS+LSACSS+G L  GKQ
Sbjct: 355 ---------------------KALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ 393

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
            H +A K G+  D+I+  ALLD Y K                               C  
Sbjct: 394 FHSYAIKAGMSSDIILEGALLDLYVK-------------------------------CSD 422

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           I+ A   F +   ++++ WN M+V      +  E+  +F  M    +  ++F+  S++  
Sbjct: 423 IKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRT 482

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------- 419
           C+++ +++LGEQ+  +V   G   +  +S+ L+D Y K G                    
Sbjct: 483 CSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSW 542

Query: 420 --------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         +AL LF EM++ G+    I F + +SAC     + +GQ        
Sbjct: 543 TAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQ-------- 594

Query: 466 QYHIDPEIEHYS-------CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
           Q H    +  YS        +V L+AR G + +A    +++ F  D   W+S++ G    
Sbjct: 595 QIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKI-FSKDNISWNSLISGFAQS 653

Query: 519 G 519
           G
Sbjct: 654 G 654



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 137/357 (38%), Gaps = 74/357 (20%)

Query: 206 NSMISGYISNNE-DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           N+ +S   SN+E +   +   H M   GV  ++ T   +L  C S G+   G ++HG   
Sbjct: 36  NTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKIL 95

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
           K+G   +V++   L+D                               +Y + G ++ A  
Sbjct: 96  KMGFCAEVVLCERLMD-------------------------------LYIAFGDLDGAVT 124

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS- 383
           +F  MP + L  WN ++            L LF  M +  ++ D+ + A V+  C     
Sbjct: 125 VFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDV 184

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------ 419
                E++ AR    G ++   +   L+D Y K G+                        
Sbjct: 185 PFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLS 244

Query: 420 ---------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
                    +A+ LF +M  +GV PT   F+++LSAC      K G++    +  Q    
Sbjct: 245 GLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQ---G 301

Query: 471 PEIEHYSC--MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG--DKGL 523
             +E Y C  +V L++R G    A  +   M  + D   ++S++ G    G  DK L
Sbjct: 302 FSLETYVCNALVTLYSRLGNFIPAEQVFNAM-LQRDEVSYNSLISGLSQQGYSDKAL 357


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 176/600 (29%), Positives = 298/600 (49%), Gaps = 80/600 (13%)

Query: 46  RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS 105
           + +  +MR G+   AL +FD MP RN  S+NAMI G+++      +  LF+ MP K+ FS
Sbjct: 38  KAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFS 97

Query: 106 WNMLISGFAKADLAALEYGKQIHSHILVNGL-DFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           WN++++G+A+         +   + +L + + + D V  +++++ Y + G  + A  V +
Sbjct: 98  WNLMLTGYARNR-------RLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFD 150

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
            M   +    + L++ Y   G++ +ARR+F+  +D   +  N ++ GY+  N   +A  L
Sbjct: 151 RMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQL 210

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
           F ++     + D  +  +++S  +  G L   +++   +     + DV   +A++  Y +
Sbjct: 211 FDQI----PVRDLISWNTMISGYAQDGDLSQARRLFEES----PVRDVFTWTAMVYAYVQ 262

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE------------------------ 320
            GM  +A ++F E+     +  N MI  Y+   R++                        
Sbjct: 263 DGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGY 322

Query: 321 -------DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
                   A+++F  MP +  +SW ++I G +QNG   EA+++   M +    +++ +  
Sbjct: 323 CQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFC 382

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-----YD-------- 420
             +SACA+I++LELG+QV  +V   G +   ++  +LV  YCKCG     YD        
Sbjct: 383 CALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHK 442

Query: 421 --------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                               AL +F  M   GVKP  IT   +LSAC H GL   G ++F
Sbjct: 443 DIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYF 502

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
            +M   Y I P  +HY+CM+DL  RAGCL EA NLI  MPFE D   W ++L     HG+
Sbjct: 503 HSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGN 562

Query: 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             LG + AE + +++P N+  Y+ LS+++A SG W   S +R  MR+  V K PG SW +
Sbjct: 563 MELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVE 622



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/453 (22%), Positives = 190/453 (41%), Gaps = 68/453 (15%)

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D  +V  +  ++ + + G  + A  V + M   +    +A+ISGY    K + AR +FD+
Sbjct: 30  DPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDK 89

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMR---------------RNGVLEDAS--- 238
                   WN M++GY  N    +A +LF  M                R+G +++A    
Sbjct: 90  MPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVF 149

Query: 239 ---------TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
                    +   +L+A    G LE  +++           ++I  + L+  Y KR M  
Sbjct: 150 DRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDW----ELISCNCLMGGYVKRNMLG 205

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA +LF ++ V D I  NTMI+ Y+  G +  A+ +F   P + + +W +M+    Q+G 
Sbjct: 206 DARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGM 265

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS------- 402
             EA  +F  M +      + S   +I+  A    +++G ++F  +    + S       
Sbjct: 266 LDEARRVFDEMPQ----KREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISG 321

Query: 403 --------------------DQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITF 440
                               D +   +++  Y + G   +A+ +  EM+  G      TF
Sbjct: 322 YCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTF 381

Query: 441 TAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
              LSAC     ++ G++     ++  Y     +   + +V ++ + GC++EA ++ + +
Sbjct: 382 CCALSACADIAALELGKQVHGQVVRTGYEKGCLVG--NALVGMYCKCGCIDEAYDVFQGV 439

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
             + D+  W+++L G   HG       V E MI
Sbjct: 440 QHK-DIVSWNTMLAGYARHGFGRQALTVFESMI 471



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 172/394 (43%), Gaps = 62/394 (15%)

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           ++P     +  IS +   G  + A  VFD     +SV +N+MISGY+ N + + A  LF 
Sbjct: 29  EDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFD 88

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
           KM                                          D+   + +L  Y++  
Sbjct: 89  KMPHK---------------------------------------DLFSWNLMLTGYARNR 109

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
              DA  LF  +   D +  N M++ Y   G +++A+ +F  MP+K+ ISWN ++    +
Sbjct: 110 RLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVR 169

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           +G   EA  LF + +  +L     S   ++      + L    Q+F ++ +     D I 
Sbjct: 170 SGRLEEARRLFESKSDWEL----ISCNCLMGGYVKRNMLGDARQLFDQIPV----RDLIS 221

Query: 407 STSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
             +++  Y + G    A  LF E   + V+  + T+TA++ A    G++ E ++ FD M 
Sbjct: 222 WNTMISGYAQDGDLSQARRLFEE---SPVR-DVFTWTAMVYAYVQDGMLDEARRVFDEMP 277

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
            +  +      Y+ M+  +A+   ++    L E+MPF  ++G W+ ++ G   +GD    
Sbjct: 278 QKREMS-----YNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQNGDLAQA 331

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           R + + M + D  +  A I   + +A +G +E++
Sbjct: 332 RNLFDMMPQRDSVSWAAII---AGYAQNGLYEEA 362



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   ++ G     L + N L+ MY +CG   +A  +F  +  ++
Sbjct: 385 LSACADIAALELGKQVHGQVVRTGYEKGCL-VGNALVGMYCKCGCIDEAYDVFQGVQHKD 443

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--ALEYGK 125
             SWN M+ G+ + G   ++L +F  M     + ++ +   ++S  +   L     EY  
Sbjct: 444 IVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEY-- 501

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA-NQVLNMMKEPDDFCLSALISGYANC 184
             HS     G+  +S   + +++L G+ G    A N + NM  EPD     AL+      
Sbjct: 502 -FHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIH 560

Query: 185 GKM 187
           G M
Sbjct: 561 GNM 563


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 296/596 (49%), Gaps = 104/596 (17%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           VG+Q+H   +K G     +   + LL MY +C    DA ++F  +PRRN  SWNA+I GF
Sbjct: 120 VGQQVHSLIVKMG-YEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGF 178

Query: 83  MKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
           +  G  + +  L   M ++    +D +++ L++   +     L    Q+H  I+ +G+ F
Sbjct: 179 VLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTM--QLHCKIIKHGVQF 236

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D                    N V N           A I+ Y+ CG + DA RVFD   
Sbjct: 237 D--------------------NTVCN-----------ATITSYSQCGSLEDAERVFDGAV 265

Query: 199 DTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
            +   V WNSM++ +++++    A  LF  M++ G   D  T  +++SACS     ++GK
Sbjct: 266 GSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHK---DNGK 322

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
            +HG   K G+   V + +A++  Y                             + SS  
Sbjct: 323 SLHGLVIKRGLEQLVPICNAVIAMY-----------------------------LESSSN 353

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            +EDA ++F +M +K  +SWNS++ G SQ G    AL LF +M    + +D ++ ++V+ 
Sbjct: 354 SMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLR 413

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------ 419
           +C+++++L+LG+Q+       G +S+  +++SL+  Y KCG                   
Sbjct: 414 SCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSIT 473

Query: 420 ---------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                           AL LF +MR+  VK   ITF A L+AC H GLV++G+    +M 
Sbjct: 474 WNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMA 533

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             Y I P +EHY+C VDLF RAG L+EA  LIE MPF+ D  +W ++L  C A GD  L 
Sbjct: 534 SDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELA 593

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +VA  ++EL+PE  C Y+ LS+++     W++ + +  +MRE+ V K+PG SW +
Sbjct: 594 AQVASHLLELEPEEHCTYVILSNMYGHLKRWDEKACMARLMRERKVKKVPGWSWIE 649



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 126/555 (22%), Positives = 229/555 (41%), Gaps = 125/555 (22%)

Query: 45  NRLLQMYMRC--GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG------HKEKSLQLFN 96
           N +L  Y RC  G  T A  LFDEM  R+  +WN MI G++  G         KS++ F 
Sbjct: 38  NNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFG 97

Query: 97  VMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
           +MP  + +++  ++ G A A    L+ G+Q+HS I+  G +     GS+L+++Y KC   
Sbjct: 98  LMP--DAYTFGSILKGVACA--CRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKC--- 150

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
                                        ++ DA  VF      +SV WN++I+G++   
Sbjct: 151 ----------------------------ERVRDAFMVFKCIPRRNSVSWNALIAGFVLEG 182

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
           +   A  L   M   GV  D  T + +L+      F +   Q+H    K GV  D  V +
Sbjct: 183 DHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCN 242

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR-TMPNKSLI 335
           A + +YS+                               CG +EDA+ +F   + ++ L+
Sbjct: 243 ATITSYSQ-------------------------------CGSLEDAERVFDGAVGSRDLV 271

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           +WNSM+     +     A  LF +M +     D ++  ++ISAC++  +   G+ +   V
Sbjct: 272 TWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHKDN---GKSLHGLV 328

Query: 396 TIIGLDS---------------------------------DQIISTSLVDFYCKCGY--D 420
              GL+                                  D++   S++  + + G+  +
Sbjct: 329 IKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSEN 388

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           AL LF  MR   V      F+A+L +C     ++ GQ+    +  +   +      S ++
Sbjct: 389 ALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQ-IHVLTVKSGFESNDFVASSLI 447

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK----GLGRKVAERMIELD- 535
            ++++ G + +A    E+   ++ +  W+SI+     HG      GL  ++ ++ +++D 
Sbjct: 448 FMYSKCGMIEDARKSFEKTAKDSSI-TWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDH 506

Query: 536 -----PENACAYIQL 545
                   AC++I L
Sbjct: 507 ITFVAALTACSHIGL 521



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/440 (23%), Positives = 187/440 (42%), Gaps = 79/440 (17%)

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC--GKMNDARRVFDR 196
           +SV+ SS   LY     F +  Q + + +  D +  + ++S Y  C  G +  A  +FD 
Sbjct: 5   NSVIDSSKHALYNI---FITHCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDE 61

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
            +   +V WN+MISGY+++     A  L+  M+  G++ DA T  S+L   +    L+ G
Sbjct: 62  MSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVG 121

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           +QVH    K+G  + V   SALLD Y+K                               C
Sbjct: 122 QQVHSLIVKMGYEEHVYAGSALLDMYAK-------------------------------C 150

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
            R+ DA  +F+ +P ++ +SWN++I G    G    A  L   M +  +R+D  + + ++
Sbjct: 151 ERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLL 210

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD-------- 420
           +        +L  Q+  ++   G+  D  +  + +  Y +CG        +D        
Sbjct: 211 TLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDL 270

Query: 421 ------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                             A  LF +M+  G +P I T+T I+SAC H    K+  K    
Sbjct: 271 VTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSH----KDNGKSLHG 326

Query: 463 MKWQYHIDPEIEHYSCMVDLF--ARAGCLNEAVNLIEQMPFEADVGMWSSILRGC--VAH 518
           +  +  ++  +   + ++ ++  + +  + +A+N+   M  +  V  W+SIL G     H
Sbjct: 327 LVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVS-WNSILTGFSQTGH 385

Query: 519 GDKGLGRKVAERMIELDPEN 538
            +  L   V  R   +D ++
Sbjct: 386 SENALKLFVHMRFAVVDIDH 405



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 91/198 (45%), Gaps = 13/198 (6%)

Query: 5   IDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           ID+ A   +L+SC+   ++ +G+Q+H+  +K G  ++   +A+ L+ MY +CG   DA  
Sbjct: 403 IDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDF-VASSLIFMYSKCGMIEDARK 461

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122
            F++  + +  +WN+++  + + G  + +L LF  M  K      M    F  A  A   
Sbjct: 462 SFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKK---VKMDHITFVAALTACSH 518

Query: 123 YGKQIHSHILVNGLDFDSVLGSSL------VNLYGKCGDFNSANQVLNMMK-EPDDFCLS 175
            G       L+  +  D  +   +      V+L+G+ G  + A  ++  M  +PD     
Sbjct: 519 IGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAMVWK 578

Query: 176 ALISGYANCGKMNDARRV 193
            L+     CG +  A +V
Sbjct: 579 TLLGACRACGDIELAAQV 596


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 187/593 (31%), Positives = 290/593 (48%), Gaps = 103/593 (17%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K +H H  + G + S L I N L+ MY +CG+  DA L+FD M  R+  SWNAM+ G  +
Sbjct: 443 KVVHKHAEEAGFI-SDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQ 501

Query: 85  LGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
            G   ++  +F  M Q+    +  ++  L++     D  ALE+  ++H H +  GL  D 
Sbjct: 502 NGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTD--ALEWVNEVHKHAVETGLISDF 559

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            +GS+ +++Y +C                               G ++DAR +FD+ +  
Sbjct: 560 RVGSAFIHMYIRC-------------------------------GSIDDARLLFDKLSVR 588

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
               WN+MI G        EAL LF +M+R G + DA+T  ++LSA      LE  K+VH
Sbjct: 589 HVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVH 648

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
            HA   G++D + V +AL+ TYSK                               CG ++
Sbjct: 649 SHATDAGLVD-LRVGNALVHTYSK-------------------------------CGNVK 676

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            AK +F  M  +++ +W  MI GL+Q+G   +A   F  M +  +  D  +  S++SACA
Sbjct: 677 YAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACA 736

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
           +  +LE  ++V       GL SD  +  +LV  Y KCG                      
Sbjct: 737 STGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTV 796

Query: 419 -----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +AL  F +M++ G KP   ++ A+L+AC H GLV EG++ F +M   Y
Sbjct: 797 MIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDY 856

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
            I+P +EHY+CMVDL  RAG L EA   I  MP E D   W ++L  CV +G+  +    
Sbjct: 857 GIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFA 916

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           A+  ++L P++A  Y+ LS+I+A +G+WE+  L+R +M+ K + K PG SW +
Sbjct: 917 AKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIE 969



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 233/500 (46%), Gaps = 79/500 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C     I + KQ+H+  +K G +   L +AN+LL++Y+RCG    A  +FD++ ++
Sbjct: 124 ILQRCLKQEDILLAKQVHVCIIKSG-MEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKK 182

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           N + W  MI G+ + GH E ++++++ M Q+    N+ ++  ++   A      L++GK+
Sbjct: 183 NIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILK--ACCCPVNLKWGKK 240

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH+HI+ +G   D  + ++LVN+Y K                               CG 
Sbjct: 241 IHAHIIQSGFQSDVRVETALVNMYVK-------------------------------CGS 269

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + DA+ +FD+  + + + W  MI G        EA  LF +M+R G + ++ T  S+L+A
Sbjct: 270 IEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNA 329

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            +S G LE  K+VH HA   G+  D+ V +AL+  Y+K                      
Sbjct: 330 NASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK---------------------- 367

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                     G I+DA+ +F  M  + + SW  MI GL+Q+G   EA  LF  M +    
Sbjct: 368 ---------SGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCL 418

Query: 367 MDKFSLASVI--SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DAL 422
            +  +  S++  SA A+ S+LE  + V       G  SD  I  +L+  Y KCG   DA 
Sbjct: 419 PNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDAR 478

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            +F+ M +  V    I++ A++      G   E    F  M+ Q  + P+   Y  +++ 
Sbjct: 479 LVFDGMCDRDV----ISWNAMMGGLAQNGCGHEAFTVFLQMQ-QEGLVPDSTTYLSLLNT 533

Query: 483 FARAGCLNEAVNLIEQMPFE 502
                 L E VN + +   E
Sbjct: 534 HGSTDAL-EWVNEVHKHAVE 552



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 181/435 (41%), Gaps = 92/435 (21%)

Query: 134 NGLDFDSVLGSSLVNLYGKC---GDFNSANQV----LNMMKEPDDFCLSALISGYANCGK 186
            G+  DS    S VN+  +C    D   A QV    +    E + +  + L+  Y  CG+
Sbjct: 112 QGIAIDSF---SYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGR 168

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  AR+VFD+    +  +W +MI GY       +A+ ++ KMR+     +  T  S+L A
Sbjct: 169 LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKA 228

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C     L+ GK++H H  + G   DV V +AL++ Y K                      
Sbjct: 229 CCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVK---------------------- 266

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG IEDA+ IF  M  +++ISW  MI GL+  G   EA  LF  M +    
Sbjct: 267 ---------CGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI 317

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------- 417
            + ++  S+++A A+  +LE  ++V +     GL  D  +  +LV  Y K          
Sbjct: 318 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 377

Query: 418 ------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                   G +A +LF +M+  G  P + T+ +IL+A       
Sbjct: 378 FDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIAST- 436

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDL---------FARAGCLNEAVNLIEQMPFEAD 504
                   A++W   +    E    + DL         +A+ G +++A  + + M  + D
Sbjct: 437 -------SALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM-CDRD 488

Query: 505 VGMWSSILRGCVAHG 519
           V  W++++ G   +G
Sbjct: 489 VISWNAMMGGLAQNG 503



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 113/236 (47%), Gaps = 14/236 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  ++   K++H H +  G++ S L + N L+ MY +CG+  DA  +FD+M  R
Sbjct: 731 ILSACASTGALEWVKEVHNHAVSAGLV-SDLRVGNALVHMYAKCGSIDDARSVFDDMVER 789

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           + FSW  MI G  + G   ++L  F  M     + N +S+  +++  + A L   E  +Q
Sbjct: 790 DVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVD-EGRRQ 848

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALISGYANCG 185
             S     G++      + +V+L G+ G    A   +LNM  EPDD    AL+      G
Sbjct: 849 FLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYG 908

Query: 186 KMNDA-----RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
            +  A      R+  +    S+ +  S I  Y +  +  + LL+   M+R G+ ++
Sbjct: 909 NLEMAEFAAKERLKLKPKSASTYVLLSNI--YAATGKWEQKLLVRSMMQRKGIRKE 962



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 123/277 (44%), Gaps = 42/277 (15%)

Query: 217 EDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
           +D  A+L   K+R + G+  D+ +  ++L  C     +   KQVH    K G+  ++ VA
Sbjct: 100 KDAVAML---KIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVA 156

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
           + LL  Y + G    A ++F +L   +  +  TMI  Y+  G  EDA  ++  M  +   
Sbjct: 157 NKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQEC-- 214

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
                       G P                 ++ +  S++ AC    +L+ G+++ A +
Sbjct: 215 ------------GQP-----------------NEITYLSILKACCCPVNLKWGKKIHAHI 245

Query: 396 TIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
              G  SD  + T+LV+ Y KCG   DA  +F++M    V+  +I++T ++    H G  
Sbjct: 246 IQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKM----VERNVISWTVMIGGLAHYGRG 301

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           +E    F  M+ +  I P    Y  +++  A AG L 
Sbjct: 302 QEAFHLFLQMQREGFI-PNSYTYVSILNANASAGALE 337


>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
          Length = 674

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 182/595 (30%), Positives = 288/595 (48%), Gaps = 69/595 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y   G+   A L+FD+MPRRN  SWNA++  +++      +  LF  MP KN  S+
Sbjct: 75  LLTAYADGGDLASARLVFDDMPRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSY 134

Query: 107 NMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
             +ISG AKA +  L   + ++  +     D   V  ++L+  Y + G+   A +V   M
Sbjct: 135 GAIISGLAKAGM--LREAELVYEEMPQQWRD--PVGSNALMAGYLRVGELAMALRVFEGM 190

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
              D    SA++ G    G +++ARRVFD   + S V W SMI GY+     ++ LLLF 
Sbjct: 191 TVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFL 250

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            MRR GV  +A+TL+ VL AC+       G Q+H     +G   D+ +  +++  YS+ G
Sbjct: 251 NMRREGVQVNATTLSVVLDACAGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFG 310

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
             +DA + F+ ++  D +  N++IT Y     +E+A  +F+ MP K  +SW SM+VG + 
Sbjct: 311 WMADAQRAFNCMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFAN 370

Query: 347 -------------------------------NGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                                          NG  + A+  FC M++   + +  + + +
Sbjct: 371 RGWMRESVELFEQMPVKDVVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTITFSCL 430

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
           +SA A+++ L  G Q  A    +G   D  + TSL+  Y KCG                 
Sbjct: 431 LSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLISMYAKCGRLAEAHHVFSSISNPSL 490

Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                            DAL LF +M+N G KP  +TF  IL+ C   G V++G  +F++
Sbjct: 491 IAINSMITAFVQHGFAEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFES 550

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           M+  Y ++P  EHY+CMVDL  RAG L EA+ +I  MP       W+++L     H +  
Sbjct: 551 MRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLA 610

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
             +  A++++E DP +A AY  LS +F+++G  E   + + +       K PG S
Sbjct: 611 FAKIAAQKLLEKDPYDATAYTVLSKMFSSAGM-EYEEMQKVVQLSNMASKRPGYS 664



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 123/528 (23%), Positives = 217/528 (41%), Gaps = 113/528 (21%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N L+  Y+R G    AL +F+ M  R+  SW+AM++G  K G   ++ ++F+ MP+++ 
Sbjct: 167 SNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERSV 226

Query: 104 FSWNMLISGFAK---------------------------------ADLAALEYGKQIHSH 130
            SW  +I G+ K                                 A  +    G QIH+ 
Sbjct: 227 VSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDACAGASLAREGIQIHNL 286

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY--------- 181
           I+  G + D  LG S++ +Y + G    A +  N M++ D    ++LI+GY         
Sbjct: 287 IISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKDIVSWNSLITGYVQHDMVEEA 346

Query: 182 ----------------------ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
                                 AN G M ++  +F++      V W ++IS +I+N +  
Sbjct: 347 HVLFKLMPQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDVVAWTAIISSFITNGDYL 406

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
            A+  F +M + G   +  T + +LSA +SL  L  G+Q H ++  +G + D  V ++L+
Sbjct: 407 SAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLI 466

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
             Y+K G  ++A  +FS +     I +N+MIT +   G  ED                  
Sbjct: 467 SMYAKCGRLAEAHHVFSSISNPSLIAINSMITAFVQHGFAED------------------ 508

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TII 398
                        AL LF  M     + +  +   +++ CA    ++ G   F  +  + 
Sbjct: 509 -------------ALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVY 555

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACD-HCGLV-- 453
           G++ +    T +VD   + G   +AL + N M           + A+LSA   H  L   
Sbjct: 556 GVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSD---AWAALLSASSLHSNLAFA 612

Query: 454 -KEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499
               QK  +        DP +   Y+ +  +F+ AG   E +  + Q+
Sbjct: 613 KIAAQKLLEK-------DPYDATAYTVLSKMFSSAGMEYEEMQKVVQL 653



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 181/383 (47%), Gaps = 41/383 (10%)

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           + P+   L+AL++ Y   G++ DA+ +FD+      + W ++++ Y    +   A L+F 
Sbjct: 34  RGPNRAHLNALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFD 93

Query: 227 KM-RRNG--------------------------VLEDASTLASVLSACSSLGFLEHGKQV 259
            M RRN                             ++A +  +++S  +  G L   + V
Sbjct: 94  DMPRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGMLREAELV 153

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           +    +     D + ++AL+  Y + G  + A ++F  + V D I  + M+      G +
Sbjct: 154 YEEMPQ--QWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSV 211

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
            +A+ +F  MP +S++SW SMI G  + G   + L LF NM +  ++++  +L+ V+ AC
Sbjct: 212 SEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDAC 271

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTI 437
           A  S    G Q+   +  +G + D  +  S++  Y + G+  DA   FN M+    +  I
Sbjct: 272 AGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQ----QKDI 327

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           +++ ++++      +V+E    F  M  +  +      ++ MV  FA  G + E+V L E
Sbjct: 328 VSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVS-----WTSMVVGFANRGWMRESVELFE 382

Query: 498 QMPFEADVGMWSSILRGCVAHGD 520
           QMP + DV  W++I+   + +GD
Sbjct: 383 QMPVK-DVVAWTAIISSFITNGD 404



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 149/330 (45%), Gaps = 37/330 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C        G Q+H   +  G     + + + ++ MY R G   DA   F+ M
Sbjct: 264 LSVVLDACAGASLAREGIQIHNLIISMG-FELDIFLGDSVIIMYSRFGWMADAQRAFNCM 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
            +++  SWN++I G+++    E++  LF +MPQK+  SW  ++ GFA       ++E  +
Sbjct: 323 QQKDIVSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRESVELFE 382

Query: 126 Q-----------IHSHILVNGLDF-----------------DSVLGSSLVNLYGKCGDFN 157
           Q           I S  + NG D+                 +++  S L++        N
Sbjct: 383 QMPVKDVVAWTAIISSFITNG-DYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLN 441

Query: 158 SANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
              Q     +NM    D    ++LIS YA CG++ +A  VF   ++ S +  NSMI+ ++
Sbjct: 442 QGRQAHAYSINMGWVFDSAVHTSLISMYAKCGRLAEAHHVFSSISNPSLIAINSMITAFV 501

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDV 272
            +    +AL LF KM+  G   +  T   +L+ C+  GF++ G         V GV  + 
Sbjct: 502 QHGFAEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNP 561

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYD 302
              + ++D   + G+ ++A ++ + +   D
Sbjct: 562 EHYTCMVDLLGRAGLLAEALEMINSMPQND 591


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 182/609 (29%), Positives = 303/609 (49%), Gaps = 107/609 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    S ++GKQ+H   +K   ++ +L +AN  L MY + G   DA  LF  +P +
Sbjct: 432 ILGACTYLSSFYLGKQVHCVTIKN-CMDISLFVANATLDMYSKYGAIGDAKALFSLIPYK 490

Query: 71  NCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  SWNA+  G  +   +E      K ++L  + P  +D S++  I+  A +++ A E G
Sbjct: 491 DSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITP--DDVSFSTAIN--ACSNIRATETG 546

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQIH   +  G+  +  +GSSL++LY K GD  S+                         
Sbjct: 547 KQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESS------------------------- 581

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                 R++F +   +S V  N++I+G++ NN + EA+ LF ++ ++G+   + T +S+L
Sbjct: 582 ------RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSIL 635

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S CS       GKQVH +  K GV+ D                              DT+
Sbjct: 636 SGCSGSLNSAIGKQVHCYTLKSGVLYD------------------------------DTL 665

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           L  ++  +Y     +EDA  +   MP+ K+L  W ++I G +QNG    +L  F  M   
Sbjct: 666 LGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHC 725

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
           ++R D+ + ASV+ AC+++++   G+++   +T  G  S +  +++L+D Y KCG     
Sbjct: 726 NVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISS 785

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +AL LF +M    +KP  +TF  +L AC H
Sbjct: 786 FEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTH 845

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GL+ EG+ +F +M+  Y + P ++HY+C +DL  R G L EA   I+Q+PF  D  +W+
Sbjct: 846 SGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWA 905

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           + L  C  H D+  G+  A +++EL+P+ +  Y+ LSS+ A +G W ++ + R+ MREK 
Sbjct: 906 TYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKG 965

Query: 570 VGKLPGCSW 578
           V K PGCSW
Sbjct: 966 VAKFPGCSW 974



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 153/624 (24%), Positives = 256/624 (41%), Gaps = 186/624 (29%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+    +  G+Q+H   +K G  +S    A  L+ MY +CG+  +A  +FD +
Sbjct: 161 LAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAA-LVDMYAKCGDVPNARRVFDGI 219

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------------------------------- 96
              +   W++MI  + ++G  +++L LF+                               
Sbjct: 220 ACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHAT 279

Query: 97  ----VMPQKNDFSWNMLISGFAK---------------------------------ADLA 119
                MP  +  +WN +ISG A+                                 A++ 
Sbjct: 280 ALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMK 339

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A   G+Q+H+  +++GLD +  +GSSL+NLY K                           
Sbjct: 340 AFVEGQQMHAAAVMHGLDANVFVGSSLINLYAK--------------------------- 372

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               CG  +DA+ VFD + + + VMWN+M++G++ N    EA+ +F  M R  +  D  T
Sbjct: 373 ----CGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFT 428

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             S+L AC+ L     GKQVH    K  +   + VA+A LD YSK G   DA        
Sbjct: 429 FVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA-------- 480

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                                  K +F  +P K  ISWN++ VGL+QN    EA+ +   
Sbjct: 481 -----------------------KALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKR 517

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M    +  D  S ++ I+AC+NI + E G+Q+       G+ S+  + +SL+D Y K G 
Sbjct: 518 MRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGD 577

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+ LF ++   G+KP+ +TF++ILS 
Sbjct: 578 VESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSG 637

Query: 447 CD-----------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
           C            HC  +K G  + D +               +  ++ ++  L +A  L
Sbjct: 638 CSGSLNSAIGKQVHCYTLKSGVLYDDTLLG-----------VSLAGIYLKSKMLEDANKL 686

Query: 496 IEQMPFEADVGMWSSILRGCVAHG 519
           + +MP   ++  W++I+ G   +G
Sbjct: 687 LTEMPDHKNLFEWTAIISGYAQNG 710



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 183/458 (39%), Gaps = 100/458 (21%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           + +H  IL  G      LG SLV LY K G    A   L    E      S+L+S +A  
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G   D    F     T+                              G   D   LA VL
Sbjct: 136 GSPGDVLGAFRYIRCTA------------------------------GGRPDQFGLAVVL 165

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SACS +G L +G+QVH    K G    V   +AL+D Y+K G   +A ++F  +   DTI
Sbjct: 166 SACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTI 225

Query: 305 LLNTMITVY-----------------------------------SSCGRIEDAKHIFRTM 329
             ++MI  Y                                   +S GR++ A  + + M
Sbjct: 226 CWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKM 285

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           P  S ++WN++I G +Q+G     L L+ +M    L   + + AS++SA AN+ +   G+
Sbjct: 286 PTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQ 345

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------------- 418
           Q+ A   + GLD++  + +SL++ Y KCG                               
Sbjct: 346 QMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNE 405

Query: 419 --YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
              +A+ +F  M    ++    TF +IL AC +      G K    +  +  +D  +   
Sbjct: 406 LPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG-KQVHCVTIKNCMDISLFVA 464

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           +  +D++++ G + +A  L   +P++  +  W+++  G
Sbjct: 465 NATLDMYSKYGAIGDAKALFSLIPYKDSIS-WNALTVG 501



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 18/225 (8%)

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF----CNM 360
           L ++++ +Y   GR+  A         ++  + +S++   +++GSP + L  F    C  
Sbjct: 93  LGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTA 152

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                R D+F LA V+SAC+ +  L  G QV   V   G  S      +LVD Y KCG  
Sbjct: 153 GG---RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDV 209

Query: 419 YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
            +A  +F+ +      P  I ++++++     G  +E    F  M  +    P+      
Sbjct: 210 PNARRVFDGI----ACPDTICWSSMIACYHRVGCYQEALALFSRMD-KMGSAPDQVTLVT 264

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
           ++   A +G L+ A  L+++MP  + V  W++++ G   H   GL
Sbjct: 265 IISTLASSGRLDHATALLKKMPTPSTVA-WNAVISG---HAQSGL 305



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C+   +   GK++H    K G   S     + L+ MY +CG+   +   F E+
Sbjct: 734 FASVLKACSDVTAFADGKEIHGLITKSG-FGSYETATSALIDMYSKCGDVISSFEAFKEL 792

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
             +++   WN+MI GF K G+ +++L LF  M +
Sbjct: 793 KNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEE 826


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 178/612 (29%), Positives = 298/612 (48%), Gaps = 106/612 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +  + + GKQLH + +K G ++S L I   LL +Y++C +   A   F   
Sbjct: 317 VASLLSACASVGAGYKGKQLHSYVIKMG-MSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKS------LQLFNVMPQKNDFSWNMLISGFAKADLAAL 121
              N   WN M+  + +LG+  +S      +Q+  +MP  N +++  ++       L AL
Sbjct: 376 ETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMP--NQYTYPSILR--TCTSLGAL 431

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           + G+QIH+ ++ +G  F+  + S L+++Y K                             
Sbjct: 432 DLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKH---------------------------- 463

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
              G+++ AR +  R  +   V W +MI+GY  ++   EAL LF +M   G+  D    +
Sbjct: 464 ---GELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFS 520

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           S +SAC+ +  L  G+Q+H  +   G  +D+ + +AL                       
Sbjct: 521 SAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNAL----------------------- 557

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                   +++Y+ CGR +DA   F  +  K  ISWN++I G +Q+G   EAL +F  MN
Sbjct: 558 --------VSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMN 609

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
           +  +  + F+  S +SA AN ++++ G+Q+ A +   G DS+   S  L+  Y KCG   
Sbjct: 610 QAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIE 669

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +A++LF EM+  G+ P  +TF  +LSAC 
Sbjct: 670 DAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACS 729

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV EG  +F +M  ++ + P+ EHY C+VDL  RA  L  A   IE+MP E D  +W
Sbjct: 730 HVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIW 789

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L  C  H +  +G   A  ++EL+PE++  Y+ LS+++A SG+W+     R +M+++
Sbjct: 790 RTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDR 849

Query: 569 HVGKLPGCSWAD 580
            V K PG SW +
Sbjct: 850 GVKKEPGRSWIE 861



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 141/559 (25%), Positives = 244/559 (43%), Gaps = 123/559 (22%)

Query: 8   LARLLQSCNTHHS-IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            A +L++C+   +   V +Q+H   +  G  +S L + N L+ +Y + G+   A L+F+ 
Sbjct: 114 FASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPL-VCNPLIDLYSKNGHVDLAKLVFER 172

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAA 120
           +  ++  SW AMI G  + G +++++ LF       V+P    FS   ++S   K +L  
Sbjct: 173 LFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFS--SVLSACTKIELFK 230

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L  G+Q+H  I+  GL  ++                               F  +AL++ 
Sbjct: 231 L--GEQLHGFIVKWGLSSET-------------------------------FVCNALVTL 257

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+  G +  A ++F +      + +NS+ISG         AL LF KM+ + +  D  T+
Sbjct: 258 YSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTV 317

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           AS+LSAC+S+G    GKQ+H +  K+G+  D+I+  +LLD Y K                
Sbjct: 318 ASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVK---------------- 361

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          C  IE A   F T   ++++ WN M+V   Q G+  E+  +F  M
Sbjct: 362 ---------------CFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQM 406

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK---- 416
               L  ++++  S++  C ++ +L+LGEQ+  +V   G   +  + + L+D Y K    
Sbjct: 407 QIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGEL 466

Query: 417 ----------------------CGY-------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                  GY       +AL LF EM N G++   I F++ +SAC
Sbjct: 467 DTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISAC 526

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYS-------CMVDLFARAGCLNEAVNLIEQMP 500
                + +GQ        Q H    I  YS        +V L+AR G   +A    E++ 
Sbjct: 527 AGIQALNQGQ--------QIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKID 578

Query: 501 FEADVGMWSSILRGCVAHG 519
            + ++  W++++ G    G
Sbjct: 579 AKDNIS-WNALISGFAQSG 596



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 140/552 (25%), Positives = 241/552 (43%), Gaps = 117/552 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L + C    S+   K+LH    K G     + + +RL+ +Y+  G   +A+ LFD++P  
Sbjct: 16  LFEGCFNSGSLLDAKKLHARIFKSGFDGEDV-LGSRLIDIYLAHGEVDNAIKLFDDIPSS 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYG 124
           N   WN +I G +      + L LF      NV P ++ F+  +      KA     E  
Sbjct: 75  NVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTE-- 132

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
            QIH+ I+ +G     ++ + L++LY K G  + A  V   +   D     A+ISG +  
Sbjct: 133 -QIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G+                               + EA+LLF +M ++ V+      +SVL
Sbjct: 192 GR-------------------------------EDEAILLFCQMHKSAVIPTPYVFSSVL 220

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SAC+ +   + G+Q+HG   K G+  +  V +AL+  YS+ G    A ++FS++   D I
Sbjct: 221 SACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRI 280

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                                          S+NS+I GL+Q G    AL LF  M    
Sbjct: 281 -------------------------------SYNSLISGLAQRGFSDRALQLFEKMQLDC 309

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------- 417
           ++ D  ++AS++SACA++ +   G+Q+ + V  +G+ SD II  SL+D Y KC       
Sbjct: 310 MKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAH 369

Query: 418 -------------------GYDALA-------LFNEMRNTGVKPTIITFTAILSACDHCG 451
                               Y  L        +F +M+  G+ P   T+ +IL  C   G
Sbjct: 370 EYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429

Query: 452 LVKEGQKWFDAM---KWQYHIDPEIEHYSC--MVDLFARAGCLNEAVNLIEQMPFEADVG 506
            +  G++    +    +Q+++      Y C  ++D++A+ G L+ A  +++++  E DV 
Sbjct: 430 ALDLGEQIHTQVIKSGFQFNV------YVCSVLIDMYAKHGELDTARGILQRLR-EEDVV 482

Query: 507 MWSSILRGCVAH 518
            W++++ G   H
Sbjct: 483 SWTAMIAGYTQH 494



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 135/528 (25%), Positives = 215/528 (40%), Gaps = 135/528 (25%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            K++H+ I  +G D + VLGS L+++Y                                 
Sbjct: 29  AKKLHARIFKSGFDGEDVLGSRLIDIY-------------------------------LA 57

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G++++A ++FD    ++   WN +ISG ++    ++ L LF  M    V  D ST ASV
Sbjct: 58  HGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASV 117

Query: 244 LSACS-SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           L ACS      +  +Q+H      G     +V + L+D YSK                  
Sbjct: 118 LRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKN----------------- 160

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                         G ++ AK +F  +  K  +SW +MI GLSQNG   EA+ LFC M+K
Sbjct: 161 --------------GHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHK 206

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
             +    +  +SV+SAC  I   +LGEQ+   +   GL S+  +  +LV  Y + G    
Sbjct: 207 SAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIA 266

Query: 419 ---------------YD--------------ALALFNEMRNTGVKPTIITFTAILSACDH 449
                          Y+              AL LF +M+   +KP  +T  ++LSAC  
Sbjct: 267 AEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACAS 326

Query: 450 CG--------------------LVKEGQ------KWFD-AMKWQYHIDPEIEH---YSCM 479
            G                    L+ EG       K FD     +Y +  E E+   ++ M
Sbjct: 327 VGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVM 386

Query: 480 VDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
           +  + + G L+E+  +  QM  E    +   + SILR C + G   LG ++  ++I+   
Sbjct: 387 LVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGF 446

Query: 537 E-NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIA 583
           + N      L  ++A  GE + +  I   +RE+ V      SW   IA
Sbjct: 447 QFNVYVCSVLIDMYAKHGELDTARGILQRLREEDV-----VSWTAMIA 489



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 134/339 (39%), Gaps = 69/339 (20%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M   G+  +  T   +   C + G L   K++H    K G   + ++ S L+D Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             +A KLF ++                               P+ ++  WN +I GL   
Sbjct: 61  VDNAIKLFDDI-------------------------------PSSNVSFWNKVISGLLAK 89

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACA-NISSLELGEQVFARVTIIGLDSDQII 406
               + L LF  M   ++  D+ + ASV+ AC+   +  ++ EQ+ A++   G  S  ++
Sbjct: 90  KLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLV 149

Query: 407 STSLVDFYCKCGY---------------------------------DALALFNEMRNTGV 433
              L+D Y K G+                                 +A+ LF +M  + V
Sbjct: 150 CNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAV 209

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
            PT   F+++LSAC    L K G++     +KW   +  E    + +V L++R G L  A
Sbjct: 210 IPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWG--LSSETFVCNALVTLYSRWGNLIAA 267

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
             +  +M    D   ++S++ G    G      ++ E+M
Sbjct: 268 EQIFSKM-HRRDRISYNSLISGLAQRGFSDRALQLFEKM 305


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 197/662 (29%), Positives = 308/662 (46%), Gaps = 139/662 (20%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+QLH   +K G L+  + +   L+  YM+  N  D   +FDEM  RN  +W  +I G+ 
Sbjct: 112 GRQLHCQCIKFGFLDD-VSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYA 170

Query: 84  KLGHKEKSLQLF----NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
           +    ++ L LF    N   Q N F++   +   A+  +     G Q+H+ ++ NGLD  
Sbjct: 171 RNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGG--RGLQVHTVVVKNGLDKT 228

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
             + +SL+NLY KC                               G +  AR +FD+T  
Sbjct: 229 IPVSNSLINLYLKC-------------------------------GNVRKARILFDKTEV 257

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            S V WNSMISGY +N  D EAL +F+ MR N V    S+ ASV+  C++L  L   +Q+
Sbjct: 258 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317

Query: 260 HGHACKVGVIDDVIVASALLDTYSK-----------------------RGMPS------- 289
           H    K G + D  + +AL+  YSK                         M S       
Sbjct: 318 HCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDG 377

Query: 290 --DACKLFSELK---------VYDTILL--------------------------NTMITV 312
             +A  LFSE+K          Y  IL                             ++  
Sbjct: 378 KEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDA 437

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           Y   G++E+A  +F  + +K +++W++M+ G +Q G    A+ +F  + K  ++ ++F+ 
Sbjct: 438 YVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTF 497

Query: 373 ASVISACANI-SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------- 418
           +S+++ CA   +S+  G+Q         LDS   +S++L+  Y K G             
Sbjct: 498 SSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR 557

Query: 419 --------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                 AL +F EM+   VK   +TF  + +AC H GLV+EG+K
Sbjct: 558 EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEK 617

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
           +FD M     I P  EH SCMVDL++RAG L +A+ +IE MP  A   +W +IL  C  H
Sbjct: 618 YFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVH 677

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
               LGR  AE++I + PE++ AY+ LS+++A SG+W++ + +R +M E++V K PG SW
Sbjct: 678 KKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSW 737

Query: 579 AD 580
            +
Sbjct: 738 IE 739



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 128/519 (24%), Positives = 220/519 (42%), Gaps = 110/519 (21%)

Query: 44  ANRLLQMYMRC-GNPTDALL-----LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-N 96
           AN + Q+ + C G  + + L     LFD+ P R+  S+ +++ GF + G  +++ +LF N
Sbjct: 24  ANGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLN 83

Query: 97  VMPQKNDFSWNMLISGF-AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155
           +     +   ++  S     A L    +G+Q+H   +  G   D  +G+SLV+ Y K  +
Sbjct: 84  IHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSN 143

Query: 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 215
           F                                D R+VFD   + + V W ++ISGY  N
Sbjct: 144 FK-------------------------------DGRKVFDEMKERNVVTWTTLISGYARN 172

Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
           + + E L LF +M+  G   ++ T A+ L   +  G    G QVH    K G+   + V+
Sbjct: 173 SMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVS 232

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
           ++L++ Y K G    A  LF + +V   +  N+MI+ Y++                    
Sbjct: 233 NSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA-------------------- 272

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
                      NG  +EAL +F +M    +R+ + S ASVI  CAN+  L   EQ+   V
Sbjct: 273 -----------NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSV 321

Query: 396 TIIGLDSDQIISTSLVDFYCKC---------------------------GY-------DA 421
              G   DQ I T+L+  Y KC                           G+       +A
Sbjct: 322 VKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEA 381

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           + LF+EM+  GV+P   T++ IL+A     ++   +     +K  Y     +   + ++D
Sbjct: 382 VDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVVKTNYERSSTVG--TALLD 436

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
            + + G + EA  +   +  + D+  WS++L G    G+
Sbjct: 437 AYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAGYAQTGE 474


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 164/499 (32%), Positives = 269/499 (53%), Gaps = 39/499 (7%)

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L+ GK +HSH +   L F + L + L++ Y KC    SA++V +++   +    + +IS 
Sbjct: 30  LKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISA 89

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--NGVLEDAS 238
           Y+  G  N+A  + D+    + V +NS+ISG   +    E+L +F  M +  + VL D  
Sbjct: 90  YSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEF 149

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL S++ +C+SLG  E  +QVHG A  +G+  ++I+ +AL+D Y K G P  +  +FS +
Sbjct: 150 TLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRM 209

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              D +   +M+  Y+   R+EDA  +F  M  K+ +SW ++I G +QNG   EAL LF 
Sbjct: 210 PERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFE 269

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFA---RVTIIGLDSDQIISTSLVDFYC 415
            M +  +    F+ ASV+SACA+++ +  G+++     R T I    +  I  +L+D YC
Sbjct: 270 QMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYC 329

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG                                  ++LA+F  M    ++P  +TF  
Sbjct: 330 KCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLG 389

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H GLV EG +  D+M+  Y + P  +HY+ M+DL  R   L EA+ LI++ P  
Sbjct: 390 LLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKG 449

Query: 503 AD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           +D VGMW ++L  C  HG+  L R+ AE + +L+P NA  Y+ + +I+A +  W+++  +
Sbjct: 450 SDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQV 509

Query: 562 RDIMREKHVGKLPGCSWAD 580
           R +M E+ + K   CSW +
Sbjct: 510 RRLMMERGLRKEAACSWIE 528



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 213/427 (49%), Gaps = 64/427 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D    + + L+  C T   + +GK LH HF+K  ++ +T  +ANRL+  Y +C +   A
Sbjct: 10  LDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTF-LANRLIDFYSKCDSIQSA 68

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK----- 115
             +F  +P +N  SWN +I  + + G   ++  L + MP+ N  S+N LISG        
Sbjct: 69  HKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRK 128

Query: 116 ------------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSS 145
                                         A L A E  +Q+H   ++ GL+ + ++G++
Sbjct: 129 ESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNA 188

Query: 146 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 205
           L++ YGKCG+ + +  + + M E D    +++++ YA   ++ DA  +F +  + ++V W
Sbjct: 189 LIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSW 248

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
            ++I+G+  N    EAL LF +MR  G+   A T ASVLSAC+ L  +  GK++HGH   
Sbjct: 249 TALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGH--- 305

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
                  I+ S  +D +         C +F         +LN +I +Y  CG++  A  +
Sbjct: 306 -------IIRSTCIDYF---------CNIF---------ILNALIDMYCKCGQMRSATTL 340

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           F+ M  K ++SWNS+I G +QNG   E+L +F  M + D+R +  +   ++SAC +   +
Sbjct: 341 FKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLV 400

Query: 386 ELGEQVF 392
             G ++ 
Sbjct: 401 SEGLRIL 407



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 25/256 (9%)

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG 432
           +S+IS C     L+LG+ + +      L     ++  L+DFY KC  D++   +++ +  
Sbjct: 18  SSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKC--DSIQSAHKVFHVL 75

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
                 ++  I+SA    GL  E     D M       P +  Y+ ++      G   E+
Sbjct: 76  PVKNTHSWNIIISAYSRSGLFNEAHNLLDQMP-----KPNLVSYNSLISGLGHHGFRKES 130

Query: 493 VNLIEQMPFEA-----DVGMWSSILRGCVAHGDKGLGRKV--AERMIELDPENACAYIQL 545
           +N+ + M  +      D     S++  C + G   L R+V  A  +I L+  N      L
Sbjct: 131 LNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLN-SNIIIGNAL 189

Query: 546 SSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLAN--FDEIK 603
              +   GE + S  I   M E+ V      SW   +A    +     L+ A+  F +++
Sbjct: 190 IDAYGKCGEPDISFSIFSRMPERDV-----VSWTSMVAA---YAQASRLEDAHWLFSQMQ 241

Query: 604 QHQSADFCDYIHGFDQ 619
           +  +  +   I GF Q
Sbjct: 242 EKNTVSWTALIAGFAQ 257


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 184/592 (31%), Positives = 287/592 (48%), Gaps = 80/592 (13%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAA 120
           LFD +PR      +  +    +       LQ F+ M +K  +  +  +    K  A  A+
Sbjct: 26  LFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTAS 85

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              G+Q+H H LV GL  D  + ++LV+ Y K GD  SA    + M   D   ++ LI+G
Sbjct: 86  SCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCLITG 145

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+  G ++ ARR+FD     +S  WNSMI+ Y    E  EAL LF +M   G   +A T+
Sbjct: 146 YSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITI 205

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SV S C+  G L+ GK+V                                  L  E  +
Sbjct: 206 TSVFSICAKSGDLDTGKRVR--------------------------------DLIGEDDL 233

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + I+   ++ +Y  C  I+DA+  F  M  + +++W++MI G +QNG P+E+L+LF  M
Sbjct: 234 QNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERM 293

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
              D R ++ +L  VISACA + S EL EQ+        L     + ++L+D Y +CG+ 
Sbjct: 294 KATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHV 353

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           DA++L+ +M   GV+P  ITF A+L+AC
Sbjct: 354 GRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAAC 413

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV +G  +F+ MK ++ + P++EH +C+VDL  ++G L EA   I  M  E +  +
Sbjct: 414 THAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVI 473

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W+++L  C AH D  L +  + +++ ++P+N+  Y+ LS+I+A +G W  +  IRD+MR 
Sbjct: 474 WTTLLSSCRAHADVELAKLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRS 533

Query: 568 KHVGKLPGCSWA--DGIAFNCWFLDTMFLQLANFDEIKQHQSADFCDYIHGF 617
           K+V KL   SW   DG        DT              +SA+  D IHG 
Sbjct: 534 KNVQKLSAYSWIKLDGEVHKFLVQDTY-----------HPRSAEIYDVIHGL 574



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 210/443 (47%), Gaps = 43/443 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + +SC    S   G+Q+H H L +G+L     +   L+  Y + G+   A+  FDEMP +
Sbjct: 76  VFKSCALTASSCQGRQVHCHALVRGLLGDVF-VLTALVDFYAKNGDMESAVSAFDEMPVK 134

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +    N +I G+ K G  +K+ +LF+ M ++   SWN +I+ +A            +   
Sbjct: 135 DPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHG--GEFREALALFDR 192

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKM 187
           +L  G   +++  +S+ ++  K GD ++  +V +++ E D       +AL+  Y  C  +
Sbjct: 193 MLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAI 252

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           +DARR FDR +    V W++MI+GY  N    E+L LF +M+      +  TL  V+SAC
Sbjct: 253 DDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISAC 312

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + LG  E  +Q+  +A    +     + SAL+D Y++ G    A  +FS ++    I  N
Sbjct: 313 AQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWN 372

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           +MI                                GL+ NG   +A+ L+  M +  ++ 
Sbjct: 373 SMIR-------------------------------GLAMNGFAEDAISLYEKMAENGVQP 401

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCG--YDALAL 424
           ++ +  ++++AC +   ++ G   F  +    L S Q+   + +VD  CK G  ++A   
Sbjct: 402 NEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKF 461

Query: 425 FNEMRNTGVKPTIITFTAILSAC 447
             +M    V+P  + +T +LS+C
Sbjct: 462 ICDME---VEPNAVIWTTLLSSC 481



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 190/422 (45%), Gaps = 51/422 (12%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR +FD     +  + ++ +S     +   + L  F  M R G    +  +  V  +C+ 
Sbjct: 23  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 82

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
                 G+QVH HA   G++ DV V +AL+D Y+K G    A   F E+ V D I +N +
Sbjct: 83  TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCL 142

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT YS  G ++ A+ +F  M  ++  SWNSMI   +  G   EAL LF  M     R + 
Sbjct: 143 ITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNA 202

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQ--IISTSLVDFYCKC---------- 417
            ++ SV S CA    L+ G++V     +IG D  Q  I+ T+L++ Y KC          
Sbjct: 203 ITITSVFSICAKSGDLDTGKRVR---DLIGEDDLQNVIVHTALMEMYVKCRAIDDARREF 259

Query: 418 ----------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCG--- 451
                           GY       ++L LF  M+ T  +P  +T   ++SAC   G   
Sbjct: 260 DRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDE 319

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHY-SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           LV++   + +  +      P   +  S ++D++ R G +  A ++  +M  +  V  W+S
Sbjct: 320 LVEQIGNYAENQRL-----PLTSYLGSALIDMYTRCGHVGRARSVFSRME-QKGVITWNS 373

Query: 511 ILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           ++RG   +G       + E+M E  + P N   ++ L +    +G  ++     + M+ +
Sbjct: 374 MIRGLAMNGFAEDAISLYEKMAENGVQP-NEITFVALLAACTHAGLVDQGMAFFEEMKRE 432

Query: 569 HV 570
           H+
Sbjct: 433 HL 434


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 189/609 (31%), Positives = 298/609 (48%), Gaps = 100/609 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L    T   +  G QLH   +K G L S + +AN L+ MY +C    D   LF  M
Sbjct: 250 LACFLSVSATESDLFFGVQLHTLAVKYG-LESEVAVANTLVSMYAKCKCLDDGWKLFGLM 308

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISGF-AKADLAALEYG 124
           PR +  +WN MI G ++ G  +++L LF  M QK+    +   L+S   A  DL     G
Sbjct: 309 PRDDLVTWNGMISGCVQNGFVDQALLLFCDM-QKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K++H +I+ N +  D                                F +SAL+  Y  C
Sbjct: 368 KELHGYIVRNCVHMDV-------------------------------FLVSALVDIYFKC 396

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             +  A+ V+D +     V+ ++MISGY+ N    EA+ +F  +   G+  +A  +ASVL
Sbjct: 397 RAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVL 456

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+S+  ++ G+++H +A K        V SAL+D Y+K                    
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAK-------------------- 496

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      CGR++ + +IF  +  K  ++WNSMI   +QNG P EAL+LF  M    
Sbjct: 497 -----------CGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEG 545

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           ++    +++SV+SACA++ ++  G+++   V    + +D    ++L+D Y KCG      
Sbjct: 546 VKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAH 605

Query: 419 --------------------YDALALFNE-------MRNTGVKPTIITFTAILSACDHCG 451
                               Y A  L  E       M+  G K   +TF A++SAC H G
Sbjct: 606 RVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAG 665

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V+EG + F  M  +Y I P +EH++CMVDL++RAG L++A+ LI  MPF+ D G+W ++
Sbjct: 666 QVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGAL 725

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  H +  L    ++ + +LDP N+  Y+ +S+I A +G W+  S +R +M++  V 
Sbjct: 726 LHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQ 785

Query: 572 KLPGCSWAD 580
           K+PG SW D
Sbjct: 786 KIPGYSWVD 794



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 135/556 (24%), Positives = 236/556 (42%), Gaps = 110/556 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C +   + +G Q+H   +  G+  +   +  RL+ MY+      DA+ +F  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 68  PRRNC---FSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADL 118
           PR        WN +I G    G    +L  +  M      P  +  ++  ++   A   L
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAA--L 159

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            A+  G+ +H      GLD D  +GS+L+ +                             
Sbjct: 160 GAIALGRLVHRTARTLGLDGDMFVGSALIKM----------------------------- 190

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
             YAN G + DAR+VFD   +   V+WN M+ GY+     + A+ LF  MR +G   + +
Sbjct: 191 --YANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFA 248

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TLA  LS  ++   L  G Q+H  A K G+  +V VA+ L+  Y+K              
Sbjct: 249 TLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAK-------------- 294

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            C  ++D   +F  MP   L++WN MI G  QNG   +AL LFC
Sbjct: 295 -----------------CKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFC 337

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC- 417
           +M K  +R D  +L S++ A  +++    G+++   +    +  D  + ++LVD Y KC 
Sbjct: 338 DMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCR 397

Query: 418 -------------------------GY-------DALALFNEMRNTGVKPTIITFTAILS 445
                                    GY       +A+ +F  +   G++P  +   ++L 
Sbjct: 398 AVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLP 457

Query: 446 ACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           AC     +K GQ+    A+K  Y     +E  S ++D++A+ G L+ +  +  ++  + +
Sbjct: 458 ACASMAAMKLGQELHSYALKNAYEGRCYVE--SALMDMYAKCGRLDLSHYIFSKISAKDE 515

Query: 505 VGMWSSILRGCVAHGD 520
           V  W+S++     +G+
Sbjct: 516 V-TWNSMISSFAQNGE 530


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 174/578 (30%), Positives = 302/578 (52%), Gaps = 44/578 (7%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +A  L+ M++RCG    A  LF  +     F  N+M+ G++K    + +L+LF+ MP+++
Sbjct: 175 VAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERD 234

Query: 103 DFSWNMLISGFAKADLA--ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
             SWNM++S  +++     AL+    + S     G+  DS   +S +    +        
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQS----KGVRLDSTTYTSSLTACARLSSLRWGK 290

Query: 161 Q----VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
           Q    V+  +   D +  SAL+  YA  G   +A+ VF+   D ++V W  +ISG++   
Sbjct: 291 QLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYG 350

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
             TE++ LF++MR   +  D   LA+++S C S   L  G+Q+H    K G I  V+V++
Sbjct: 351 CFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSN 410

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           +L+  Y+K      A  +F  +   D +   +MIT YS  G +  A+  F  M  K++I+
Sbjct: 411 SLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVIT 470

Query: 337 WNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           WN+M+    Q+G+  + L ++  M ++  +R D  +  ++   CA++ + +LG+Q+  R 
Sbjct: 471 WNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRT 530

Query: 396 TIIGLDSDQIISTSLVDFYCKCGY---------------------------------DAL 422
             +GL  D  ++ +++  Y KCG                                   A+
Sbjct: 531 VKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAI 590

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            +F+++   G KP  I++ A+LS C H GLV+EG+ +FD MK  ++I P +EH+SCMVDL
Sbjct: 591 EIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDL 650

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542
             RAG L EA +LI+ MP +    +W ++L  C  HG+  L    A+ + ELD  ++ +Y
Sbjct: 651 LGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSY 710

Query: 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           + ++ I+A +G+ + S+ IR +MR+K + K PG SW +
Sbjct: 711 MLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWME 748



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 147/569 (25%), Positives = 265/569 (46%), Gaps = 84/569 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA--LLLFD 65
            A  L+SC    ++   + LH   +  G L S + + N LL  Y+ CG  +DA  LLL D
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVG-LASAVFLQNTLLHAYLSCGALSDARRLLLMD 65

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEY 123
            +   N  + N M+ G+ KLG    +++LF  MP ++  SWN L+SG+  ++  L +LE 
Sbjct: 66  -IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLET 124

Query: 124 GKQIHSH------------------------------ILVNGLDF--DSVLGSSLVNLYG 151
              +H                                 +V   D   DS + ++LV+++ 
Sbjct: 125 FLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFV 184

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           +CG  + A+++   +KEP  FC +++++GY     ++ A  +FD   +   V WN M+S 
Sbjct: 185 RCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSA 244

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
              +    EAL +   M+  GV  D++T  S L+AC+ L  L  GKQ+H    +     D
Sbjct: 245 LSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHID 304

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
             VASAL++ Y+K G     C                           ++AK +F ++ +
Sbjct: 305 PYVASALVELYAKSG-----C--------------------------FKEAKGVFNSLHD 333

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           ++ ++W  +I G  Q G   E+++LF  M    + +D+F+LA++IS C +   L LG Q+
Sbjct: 334 RNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQL 393

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDH 449
            +     G     ++S SL+  Y KC     A A+F  M     +  I+++T++++A   
Sbjct: 394 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN----EKDIVSWTSMITAYSQ 449

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE----ADV 505
            G V + +++FD M      +  +  ++ M+  + + G   + + + + M  E     D 
Sbjct: 450 VGNVAKAREFFDGMS-----EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDW 504

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIEL 534
             + ++ +GC   G   LG ++  R +++
Sbjct: 505 VTYVTLFKGCADLGANKLGDQIIGRTVKV 533



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 186/410 (45%), Gaps = 47/410 (11%)

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF-SE 297
             A  L +C + G L   + +HG    VG+   V + + LL  Y   G  SDA +L   +
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 65

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           +   + I  N M+  Y+  GR+ DA  +F  MP + + SWN+++ G  Q+   + +L+ F
Sbjct: 66  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 125

Query: 358 CNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
            +M++  D   + F+LA  + +C  +    L  Q+ A V       D  ++ +LVD + +
Sbjct: 126 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 185

Query: 417 CGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
           CG   LA  LF  ++    +PT+    ++L+       V    + FD+M      + ++ 
Sbjct: 186 CGAVDLASRLFVRIK----EPTMFCRNSMLAGYVKTYGVDHALELFDSMP-----ERDVV 236

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHGDKGLGRKVAERM 531
            ++ MV   +++G + EA++++  M  +    D   ++S L  C        G+++  ++
Sbjct: 237 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQV 296

Query: 532 IE----LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCW 587
           I     +DP  A A ++L   +A SG ++++  + + + +++       +W         
Sbjct: 297 IRNLPHIDPYVASALVEL---YAKSGCFKEAKGVFNSLHDRN-----NVAWT-------- 340

Query: 588 FLDTMFLQLANFDEIKQHQSADFCDYIHGFDQARLPLSSKRSFVLGYLLS 637
            L + FLQ   F E            +  F+Q R  L +   F L  L+S
Sbjct: 341 VLISGFLQYGCFTE-----------SVELFNQMRAELMTLDQFALATLIS 379


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 176/604 (29%), Positives = 305/604 (50%), Gaps = 98/604 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     I  GK++H H ++ G   S + + N L+ MY++CG+ ++A +LFD+MP+R
Sbjct: 204 VLKTCAGVSDIARGKEIHAHVIRFG-FESDVDVGNALITMYVKCGDISNARMLFDKMPKR 262

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           +  SWNAMI G+ + G   + L+LF++M + +     + ++  A A   L     G+ +H
Sbjct: 263 DRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVH 322

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            +++ +    D  + +SL+ +Y                               ++ G++ 
Sbjct: 323 GYVVKSEFGGDISMNNSLIQMY-------------------------------SSLGRLE 351

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           +A  VF R      V W +MI+  +S+    +A+  +  M   G+L D  TL SVLSAC+
Sbjct: 352 EAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACA 411

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            +G L+ G ++H  A K G++  VIV+++L+D                            
Sbjct: 412 CIGHLDLGIRLHEIAIKTGLVSHVIVSNSLID---------------------------- 443

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
              +YS C  +++A  +FR +  K+++SW S+I+GL  N    EAL  F  M K  ++ +
Sbjct: 444 ---MYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPN 499

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD-------- 420
             +L SV+SACA I +L  G+++ A     G+  D  +  +++D Y +CG          
Sbjct: 500 SVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFN 559

Query: 421 ------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                   A+ LF++M    + P  ITF ++L AC   G+V EG
Sbjct: 560 SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEG 619

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            ++F+ MK +Y++ P ++HY+C+VD+  RAG L++A + I+ MP   D  +W ++L  C 
Sbjct: 620 LEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACR 679

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  LG   A+R+ E D ++   YI L +++A  G W+K S +R +MRE+ +   PGC
Sbjct: 680 IHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGC 739

Query: 577 SWAD 580
           SW +
Sbjct: 740 SWVE 743



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 146/566 (25%), Positives = 252/566 (44%), Gaps = 108/566 (19%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---- 98
           + N LL M++R GN  DA  +F +M  R+ FSWN ++ G+ K G  +++L L++ M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 99  PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
            + N +++  ++     A ++ +  GK+IH+H++  G + D  +G++L+ +Y K      
Sbjct: 194 IRPNVYTFPSVLK--TCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVK------ 245

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
                                    CG +++AR +FD+      + WN+MISGY  N   
Sbjct: 246 -------------------------CGDISNARMLFDKMPKRDRISWNAMISGYFENGGG 280

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            E L LF  MR   V  D  T+ +V SAC  L     G+ VHG+  K     D+ + ++L
Sbjct: 281 LEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +  YS  G   +A  +FS                                M +K ++SW 
Sbjct: 341 IQMYSSLGRLEEAETVFSR-------------------------------MESKDVVSWT 369

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           +MI  L  +  P +A++ +  M    +  D+ +L SV+SACA I  L+LG ++       
Sbjct: 370 AMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT 429

Query: 399 GLDSDQIISTSLVDFYCKC---------------------------------GYDALALF 425
           GL S  I+S SL+D Y KC                                  ++AL  F
Sbjct: 430 GLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFF 489

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFA 484
            +M+ + +KP  +T  ++LSAC   G +  G++    A++     D  + +   ++D++ 
Sbjct: 490 RQMKES-MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYV 546

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD-PENACAYI 543
           R G    A+N       + DV  W+ +L G    G   L  ++ ++M+EL+   +   +I
Sbjct: 547 RCGRKVPALNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFI 604

Query: 544 QLSSIFATSGEWEKSSLIRDIMREKH 569
            L    + SG   +     +IM+ K+
Sbjct: 605 SLLCACSKSGMVTEGLEYFNIMKNKY 630



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 121/517 (23%), Positives = 221/517 (42%), Gaps = 84/517 (16%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  +  +  +C    +  +G+ +H  ++ K      + + N L+QMY   G   +A
Sbjct: 295 VDPDLITMTTVASACELLDNERLGRGVH-GYVVKSEFGGDISMNNSLIQMYSSLGRLEEA 353

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADL 118
             +F  M  ++  SW AMI   +      K+++ + +M  +      + +     A A +
Sbjct: 354 ETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACI 413

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L+ G ++H   +  GL    ++ +SL+++Y KC                         
Sbjct: 414 GHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKC------------------------- 448

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                C  +++A  VF   +  + V W S+I G   NN   EALL F +M+ + +  ++ 
Sbjct: 449 ----KC--VDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSV 501

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL SVLSAC+ +G L  GK++H HA + GV  D  + +A+LD Y +              
Sbjct: 502 TLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVR-------------- 547

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            CGR   A + F +   K + +WN ++ G +Q G    A++LF 
Sbjct: 548 -----------------CGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFD 589

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKC 417
            M +L++  D+ +  S++ AC+    +  G + F  +     L  +      +VD   + 
Sbjct: 590 KMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRA 649

Query: 418 GY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID-PEIE 474
           G   DA     +M    ++P    + A+L+AC     V+ G+    A K  +  D   + 
Sbjct: 650 GQLDDAYDFIQDM---PIRPDAAIWGALLNACRIHRNVELGEI---AAKRVFEKDNKSVG 703

Query: 475 HYSCMVDLFARAGCLN-----EAVNLIEQMPFEADVG 506
           +Y  + +L+  AGC N     +  +L+ +    AD G
Sbjct: 704 YYILLCNLY--AGCGNWDKVSKVRSLMRERGLSADPG 738


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 175/608 (28%), Positives = 302/608 (49%), Gaps = 103/608 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  G+++H H LK G++     + + L+ MY +C    DA+ LFDE P+R
Sbjct: 112 VLKACGGLGRVIYGRRIHNHLLKTGLIWDVF-VGSSLMNMYAKCDQFVDAIKLFDEFPQR 170

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
           +   WNA+I  + K G  E +L+ F+ M +     N  ++ +++S   +  L  LE GK+
Sbjct: 171 DVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTR--LLNLERGKE 228

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  ++   +  D+                               F LSAL+  Y  CG 
Sbjct: 229 VHRELIERRILLDA-------------------------------FVLSALVDMYGKCGC 257

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  A+ VF++    +++ WN+MI+GY    +    + L  +M   G      TL S++ A
Sbjct: 258 LEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYA 317

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            S    L HGK +HG+  +  +  D+ +  +L+D Y K                      
Sbjct: 318 SSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFK---------------------- 355

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG +  A+ IFRT+    ++SWN MI G    G+ I+AL ++ NM +  ++
Sbjct: 356 ---------CGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVK 406

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  + +S +SAC+ +++L+ G ++   +    L++++I+  +L+D Y KCG        
Sbjct: 407 PDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKL 466

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL LF+EM+   V+   +TF A+LSAC H GLV
Sbjct: 467 FHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLV 526

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ-MPFEADVGMWSSIL 512
            EG  +F+ M  QY I P IEHYSC++DL  RAG L+EA  ++++     +D+G+ S++ 
Sbjct: 527 DEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLF 586

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C+ H +  LG ++ + +IE+DP++   YI LS+++A+  +W++   +R  M+E  + K
Sbjct: 587 SACLLHNNFVLGIQIGKMLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKK 646

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 647 SPGCSWIE 654



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 139/573 (24%), Positives = 245/573 (42%), Gaps = 110/573 (19%)

Query: 5   IDYLARL--LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           +DY+  L  L++C +   +  GK +H      G   S + ++  L+  Y  C +   A L
Sbjct: 1   MDYVTLLSALRTCTSSKLLKQGKLIHQRIFSCG-FQSNIVLSKSLIGFYFSCHDYASAEL 59

Query: 63  LF--DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMPQKNDFSWNMLISGFAK 115
           +F  ++ P  +   WNA++  +       ++LQLF     N   + + +++ +++   A 
Sbjct: 60  VFQTNDCPL-DVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLK--AC 116

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
             L  + YG++IH+H+L  GL +D  +GSSL+N+Y KC  F  A ++ +   + D  C +
Sbjct: 117 GGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWN 176

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           A+IS Y   GK   A + FD                               KM+  G   
Sbjct: 177 AVISCYFKDGKAEMALKTFD-------------------------------KMKELGFEP 205

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           ++ T   V+S+C+ L  LE GK+VH    +  ++ D  V SAL+D Y K G    A ++F
Sbjct: 206 NSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVF 265

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            ++   + I  N MIT                               G S  G     ++
Sbjct: 266 EKIPRKNAITWNAMIT-------------------------------GYSLKGDSRSCIE 294

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           L   MN    +    +L S+I A +    L  G+ +   +    +D D  I  SL+DFY 
Sbjct: 295 LLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYF 354

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCGY                                  AL +++ M+   VKP  +TF++
Sbjct: 355 KCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSS 414

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
            LSAC     + +G++    +   + ++        ++D++A+ G ++EA  L  Q+P +
Sbjct: 415 TLSACSQLAALDKGRELHYCI-INHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLP-K 472

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
            D+  W+S++    +HG      ++ + M +L+
Sbjct: 473 RDLVSWTSMIFAYGSHGQASEALRLFDEMQKLN 505



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 49/223 (21%)

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
           MD  +L S +  C +   L+ G+ +  R+   G  S+ ++S SL+ FY  C         
Sbjct: 1   MDYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELV 60

Query: 419 --------------------------YDALALFNEMR-NTGVKPTIITFTAILSACDHCG 451
                                      +AL LF+++  N+ V+P   T+  +L AC   G
Sbjct: 61  FQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 452 LVKEGQKWFD-----AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
            V  G++  +      + W   +       S +++++A+     +A+ L ++ P + DVG
Sbjct: 121 RVIYGRRIHNHLLKTGLIWDVFVG------SSLMNMYAKCDQFVDAIKLFDEFP-QRDVG 173

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIEL--DPENACAYIQLSS 547
            W++++      G   +  K  ++M EL  +P +    + +SS
Sbjct: 174 CWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSS 216


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 176/604 (29%), Positives = 305/604 (50%), Gaps = 98/604 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     I  GK++H H ++ G   S + + N L+ MY++CG+ ++A +LFD+MP+R
Sbjct: 204 VLKTCAGVSDIARGKEIHAHVIRFG-FESDVDVGNALITMYVKCGDISNARMLFDKMPKR 262

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           +  SWNAMI G+ + G   + L+LF++M + +     + ++  A A   L     G+ +H
Sbjct: 263 DRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVH 322

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            +++ +    D  + +SL+ +Y                               ++ G++ 
Sbjct: 323 GYVVKSEFGGDISMNNSLIQMY-------------------------------SSLGRLE 351

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           +A  VF R      V W +MI+  +S+    +A+  +  M   G+L D  TL SVLSAC+
Sbjct: 352 EAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACA 411

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            +G L+ G ++H  A K G++  VIV+++L+D                            
Sbjct: 412 CIGHLDLGIRLHEIAIKTGLVSHVIVSNSLID---------------------------- 443

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
              +YS C  +++A  +FR +  K+++SW S+I+GL  N    EAL  F  M K  ++ +
Sbjct: 444 ---MYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPN 499

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD-------- 420
             +L SV+SACA I +L  G+++ A     G+  D  +  +++D Y +CG          
Sbjct: 500 SVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFN 559

Query: 421 ------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                   A+ LF++M    + P  ITF ++L AC   G+V EG
Sbjct: 560 SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEG 619

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            ++F+ MK +Y++ P ++HY+C+VD+  RAG L++A + I+ MP   D  +W ++L  C 
Sbjct: 620 LEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACR 679

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  LG   A+R+ E D ++   YI L +++A  G W+K S +R +MRE+ +   PGC
Sbjct: 680 IHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGC 739

Query: 577 SWAD 580
           SW +
Sbjct: 740 SWVE 743



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 146/566 (25%), Positives = 252/566 (44%), Gaps = 108/566 (19%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---- 98
           + N LL M++R GN  DA  +F +M  R+ FSWN ++ G+ K G  +++L L++ M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 99  PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
            + N +++  ++     A ++ +  GK+IH+H++  G + D  +G++L+ +Y K      
Sbjct: 194 IRPNVYTFPSVLK--TCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVK------ 245

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
                                    CG +++AR +FD+      + WN+MISGY  N   
Sbjct: 246 -------------------------CGDISNARMLFDKMPKRDRISWNAMISGYFENGGG 280

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            E L LF  MR   V  D  T+ +V SAC  L     G+ VHG+  K     D+ + ++L
Sbjct: 281 LEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +  YS  G   +A  +FS                                M +K ++SW 
Sbjct: 341 IQMYSSLGRLEEAETVFSR-------------------------------MESKDVVSWT 369

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           +MI  L  +  P +A++ +  M    +  D+ +L SV+SACA I  L+LG ++       
Sbjct: 370 AMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT 429

Query: 399 GLDSDQIISTSLVDFYCKC---------------------------------GYDALALF 425
           GL S  I+S SL+D Y KC                                  ++AL  F
Sbjct: 430 GLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFF 489

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFA 484
            +M+ + +KP  +T  ++LSAC   G +  G++    A++     D  + +   ++D++ 
Sbjct: 490 RQMKES-MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYV 546

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD-PENACAYI 543
           R G    A+N       + DV  W+ +L G    G   L  ++ ++M+EL+   +   +I
Sbjct: 547 RCGRKVPALNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFI 604

Query: 544 QLSSIFATSGEWEKSSLIRDIMREKH 569
            L    + SG   +     +IM+ K+
Sbjct: 605 SLLCACSKSGMVTEGLEYFNIMKNKY 630



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 121/517 (23%), Positives = 221/517 (42%), Gaps = 84/517 (16%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  +  +  +C    +  +G+ +H  ++ K      + + N L+QMY   G   +A
Sbjct: 295 VDPDLITMTTVASACELLDNERLGRGVH-GYVVKSEFGGDISMNNSLIQMYSSLGRLEEA 353

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADL 118
             +F  M  ++  SW AMI   +      K+++ + +M  +      + +     A A +
Sbjct: 354 ETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACI 413

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L+ G ++H   +  GL    ++ +SL+++Y KC                         
Sbjct: 414 GHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKC------------------------- 448

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                C  +++A  VF   +  + V W S+I G   NN   EALL F +M+ + +  ++ 
Sbjct: 449 ----KC--VDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSV 501

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL SVLSAC+ +G L  GK++H HA + GV  D  + +A+LD Y +              
Sbjct: 502 TLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVR-------------- 547

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            CGR   A + F +   K + +WN ++ G +Q G    A++LF 
Sbjct: 548 -----------------CGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFD 589

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKC 417
            M +L++  D+ +  S++ AC+    +  G + F  +     L  +      +VD   + 
Sbjct: 590 KMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRA 649

Query: 418 GY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID-PEIE 474
           G   DA     +M    ++P    + A+L+AC     V+ G+    A K  +  D   + 
Sbjct: 650 GQLDDAYDFIQDM---PIRPDAAIWGALLNACRIHRNVELGEI---AAKRVFEKDNKSVG 703

Query: 475 HYSCMVDLFARAGCLN-----EAVNLIEQMPFEADVG 506
           +Y  + +L+  AGC N     +  +L+ +    AD G
Sbjct: 704 YYILLCNLY--AGCGNWDKVSKVRSLMRERGLSADPG 738


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 182/609 (29%), Positives = 302/609 (49%), Gaps = 107/609 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    S ++GKQ+H   +K   ++ +L +AN  L MY + G   DA  LF  +P +
Sbjct: 432 ILGACTYLSSFYLGKQVHCVTIKN-CMDISLFVANATLDMYSKYGAIGDAKALFSLIPYK 490

Query: 71  NCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  SWNA+  G  +   +E      K ++L  + P  +D S++  I+  A +++ A E G
Sbjct: 491 DSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITP--DDVSFSTAIN--ACSNIRATETG 546

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQIH   +  G+  +  +GSSL++LY K GD  S+                         
Sbjct: 547 KQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESS------------------------- 581

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                 R++F +   +S V  N++I+G++ NN + EA+ LF ++ ++G+   + T +S+L
Sbjct: 582 ------RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSIL 635

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S CS       GKQVH +  K GV+ D                              DT+
Sbjct: 636 SGCSGSLNSAIGKQVHCYTLKSGVLYD------------------------------DTL 665

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           L  ++  +Y     +EDA  +   MP+ K+L  W ++I G +QNG    +L  F  M   
Sbjct: 666 LGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHC 725

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
           ++R D+ + ASV+ AC+++++   G+++   +T  G  S +  +++L+D Y KCG     
Sbjct: 726 NVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISS 785

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +AL LF +M    +KP  +TF  +L AC H
Sbjct: 786 FEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTH 845

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GL+ EG+ +F  M+  Y + P ++HY+C +DL  R G L EA   I+Q+PF  D  +W+
Sbjct: 846 SGLISEGRHFFGPMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWA 905

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           + L  C  H D+  G+  A +++EL+P+ +  Y+ LSS+ A +G W ++ + R+ MREK 
Sbjct: 906 TYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKG 965

Query: 570 VGKLPGCSW 578
           V K PGCSW
Sbjct: 966 VAKFPGCSW 974



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 153/624 (24%), Positives = 256/624 (41%), Gaps = 186/624 (29%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+    +  G+Q+H   +K G  +S    A  L+ MY +CG+  +A  +FD +
Sbjct: 161 LAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAA-LVDMYAKCGDVPNARRVFDGI 219

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------------------------------- 96
              +   W++MI  + ++G  +++L LF+                               
Sbjct: 220 ACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHAT 279

Query: 97  ----VMPQKNDFSWNMLISGFAK---------------------------------ADLA 119
                MP  +  +WN +ISG A+                                 A++ 
Sbjct: 280 ALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMK 339

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A   G+Q+H+  +++GLD +  +GSSL+NLY K                           
Sbjct: 340 AFVEGQQMHAAAVMHGLDANVFVGSSLINLYAK--------------------------- 372

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               CG  +DA+ VFD + + + VMWN+M++G++ N    EA+ +F  M R  +  D  T
Sbjct: 373 ----CGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFT 428

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             S+L AC+ L     GKQVH    K  +   + VA+A LD YSK G   DA        
Sbjct: 429 FVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA-------- 480

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                                  K +F  +P K  ISWN++ VGL+QN    EA+ +   
Sbjct: 481 -----------------------KALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKR 517

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M    +  D  S ++ I+AC+NI + E G+Q+       G+ S+  + +SL+D Y K G 
Sbjct: 518 MRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGD 577

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+ LF ++   G+KP+ +TF++ILS 
Sbjct: 578 VESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSG 637

Query: 447 CD-----------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
           C            HC  +K G  + D +               +  ++ ++  L +A  L
Sbjct: 638 CSGSLNSAIGKQVHCYTLKSGVLYDDTLLG-----------VSLAGIYLKSKMLEDANKL 686

Query: 496 IEQMPFEADVGMWSSILRGCVAHG 519
           + +MP   ++  W++I+ G   +G
Sbjct: 687 LTEMPDHKNLFEWTAIISGYAQNG 710



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 183/458 (39%), Gaps = 100/458 (21%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           + +H  IL  G      LG SLV LY K G    A   L    E      S+L+S +A  
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G   D    F     T+                              G   D   LA VL
Sbjct: 136 GSPGDVLGAFRYIRCTA------------------------------GGRPDQFGLAVVL 165

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SACS +G L +G+QVH    K G    V   +AL+D Y+K G   +A ++F  +   DTI
Sbjct: 166 SACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTI 225

Query: 305 LLNTMITVY-----------------------------------SSCGRIEDAKHIFRTM 329
             ++MI  Y                                   +S GR++ A  + + M
Sbjct: 226 CWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKM 285

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           P  S ++WN++I G +Q+G     L L+ +M    L   + + AS++SA AN+ +   G+
Sbjct: 286 PTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQ 345

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------------- 418
           Q+ A   + GLD++  + +SL++ Y KCG                               
Sbjct: 346 QMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNE 405

Query: 419 --YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
              +A+ +F  M    ++    TF +IL AC +      G K    +  +  +D  +   
Sbjct: 406 LPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG-KQVHCVTIKNCMDISLFVA 464

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           +  +D++++ G + +A  L   +P++  +  W+++  G
Sbjct: 465 NATLDMYSKYGAIGDAKALFSLIPYKDSIS-WNALTVG 501



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 18/225 (8%)

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF----CNM 360
           L ++++ +Y   GR+  A         ++  + +S++   +++GSP + L  F    C  
Sbjct: 93  LGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTA 152

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                R D+F LA V+SAC+ +  L  G QV   V   G  S      +LVD Y KCG  
Sbjct: 153 GG---RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDV 209

Query: 419 YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
            +A  +F+ +      P  I ++++++     G  +E    F  M  +    P+      
Sbjct: 210 PNARRVFDGI----ACPDTICWSSMIACYHRVGCYQEALALFSRMD-KMGSAPDQVTLVT 264

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
           ++   A +G L+ A  L+++MP  + V  W++++ G   H   GL
Sbjct: 265 IISTLASSGRLDHATALLKKMPTPSTVA-WNAVISG---HAQSGL 305



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C+   +   GK++H    K G   S     + L+ MY +CG+   +   F E+
Sbjct: 734 FASVLKACSDVTAFADGKEIHGLITKSG-FGSYETATSALIDMYSKCGDVISSFEAFKEL 792

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
             +++   WN+MI GF K G+ +++L LF  M +
Sbjct: 793 KNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEE 826


>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 836

 Score =  298 bits (764), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 312/583 (53%), Gaps = 29/583 (4%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +++C    S     QLH H +K   L +   I N L+ MY++CG  T A  +F  +   +
Sbjct: 149 MKACGCLASTRFALQLHAHVIKLH-LGAQTCIQNSLVDMYIKCGAITLAETVFLNIESPS 207

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS-- 129
            F WN+MI G+ +L    ++L +F  MP+++  SWN LIS F+       +YG  I    
Sbjct: 208 LFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFS-------QYGHGIRCLS 260

Query: 130 --------HILVNGLDFDSVLGS--SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
                       N + + SVL +  S+ +L  K G    A ++L M    D F  S LI 
Sbjct: 261 TFVEMCNLGFKPNFMTYGSVLSACASISDL--KWGAHLHA-RILRMEHSLDAFLGSGLID 317

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            YA CG +  ARRVF+   + + V W  +ISG        +AL LF++MR+  V+ D  T
Sbjct: 318 MYAKCGCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFT 377

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           LA++L  CS   +   G+ +HG+A K G+   V V +A++  Y++ G    A   F  + 
Sbjct: 378 LATILGVCSGQNYAATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMP 437

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + DTI    MIT +S  G I+ A+  F  MP +++I+WNSM+    Q+G   E + L+  
Sbjct: 438 LRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVL 497

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M    ++ D  + A+ I ACA++++++LG QV + VT  GL SD  ++ S+V  Y +CG 
Sbjct: 498 MRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQ 557

Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
             +A  +F+ +    VK  +I++ A+++A    GL  +  + ++ M         I + +
Sbjct: 558 IKEARKVFDSIH---VK-NLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHISYVA 613

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
            + DL  RAG L++A NLI+ MPF+ +  +W ++L  C  H D  L    A++++EL+ E
Sbjct: 614 VLSDLLGRAGLLDQAKNLIDGMPFKPNATVWGALLGACRIHHDSILAETAAKKLMELNVE 673

Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++  Y+ L++I+A SGE E  + +R +M+ K + K PGCSW +
Sbjct: 674 DSGGYVLLANIYAESGELENVADMRKLMKVKGIRKSPGCSWIE 716



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 207/486 (42%), Gaps = 44/486 (9%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            +++H+ ++++GLD    L ++L+++Y  CG  + A +V       + F  + ++  + +
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82

Query: 184 CGKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE----DA 237
            G+M +A  +FD        SV W +MISGY  N     ++  F  M R+   +    D 
Sbjct: 83  SGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDP 142

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            +    + AC  L       Q+H H  K+ +     + ++L+D Y K G  + A  +F  
Sbjct: 143 FSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFLN 202

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           ++       N+MI  YS      +A H+F  MP +  +SWN++I   SQ G  I  L  F
Sbjct: 203 IESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTF 262

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M  L  + +  +  SV+SACA+IS L+ G  + AR+  +    D  + + L+D Y KC
Sbjct: 263 VEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKC 322

Query: 418 GY---------------------------------DALALFNEMRNTGVKPTIITFTAIL 444
           G                                  DALALFN+MR   V     T   IL
Sbjct: 323 GCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATIL 382

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
             C        G+        +  +D  +   + ++ ++AR G   +A      MP   D
Sbjct: 383 GVCSGQNYAATGE-LLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLR-D 440

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
              W++++     +GD    R+  + M E    N   +  + S +   G  E+   +  +
Sbjct: 441 TISWTAMITAFSQNGDIDRARQCFDMMPE---RNVITWNSMLSTYIQHGFSEEGMKLYVL 497

Query: 565 MREKHV 570
           MR K V
Sbjct: 498 MRSKAV 503


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  298 bits (764), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 189/609 (31%), Positives = 298/609 (48%), Gaps = 100/609 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L    T   +  G QLH   +K G L S + +AN L+ MY +C    D   LF  M
Sbjct: 250 LACFLSVSATESDLFFGVQLHTLAVKYG-LESEVAVANTLVSMYAKCKCLDDGWKLFGLM 308

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISGF-AKADLAALEYG 124
           PR +  +WN MI G ++ G  +++L LF  M QK+    +   L+S   A  DL     G
Sbjct: 309 PRDDLVTWNGMISGCVQNGFVDQALLLFCDM-QKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K++H +I+ N +  D                                F +SAL+  Y  C
Sbjct: 368 KELHGYIVRNCVHMDV-------------------------------FLVSALVDIYFKC 396

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             +  A+ V+D +     V+ ++MISGY+ N    EA+ +F  +   G+  +A  +ASVL
Sbjct: 397 RAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVL 456

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+S+  ++ G+++H +A K        V SAL+D Y+K                    
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAK-------------------- 496

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      CGR++ + +IF  +  K  ++WNSMI   +QNG P EAL+LF  M    
Sbjct: 497 -----------CGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEG 545

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           ++    +++SV+SACA++ ++  G+++   V    + +D    ++L+D Y KCG      
Sbjct: 546 VKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAH 605

Query: 419 --------------------YDALALFNE-------MRNTGVKPTIITFTAILSACDHCG 451
                               Y A  L  E       M+  G K   +TF A++SAC H G
Sbjct: 606 RVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAG 665

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V+EG + F  M  +Y I P +EH++CMVDL++RAG L++A+ LI  MPF+ D G+W ++
Sbjct: 666 QVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGAL 725

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  H +  L    ++ + +LDP N+  Y+ +S+I A +G W+  S +R +M++  V 
Sbjct: 726 LHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQ 785

Query: 572 KLPGCSWAD 580
           K+PG SW D
Sbjct: 786 KIPGYSWVD 794



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 135/556 (24%), Positives = 236/556 (42%), Gaps = 110/556 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C +   + +G Q+H   +  G+  +   +  RL+ MY+      DA+ +F  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 68  PRRNC---FSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADL 118
           PR        WN +I G    G    +L  +  M      P  +  ++  ++   A   L
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAA--L 159

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            A+  G+ +H      GLD D  +GS+L+ +                             
Sbjct: 160 GAIALGRLVHRTARTLGLDGDMFVGSALIKM----------------------------- 190

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
             YAN G + DAR+VFD   +   V+WN M+ GY+     + A+ LF  MR +G   + +
Sbjct: 191 --YANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFA 248

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TLA  LS  ++   L  G Q+H  A K G+  +V VA+ L+  Y+K              
Sbjct: 249 TLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAK-------------- 294

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            C  ++D   +F  MP   L++WN MI G  QNG   +AL LFC
Sbjct: 295 -----------------CKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFC 337

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC- 417
           +M K  +R D  +L S++ A  +++    G+++   +    +  D  + ++LVD Y KC 
Sbjct: 338 DMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCR 397

Query: 418 -------------------------GY-------DALALFNEMRNTGVKPTIITFTAILS 445
                                    GY       +A+ +F  +   G++P  +   ++L 
Sbjct: 398 AVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLP 457

Query: 446 ACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           AC     +K GQ+    A+K  Y     +E  S ++D++A+ G L+ +  +  ++  + +
Sbjct: 458 ACASMAAMKLGQELHSYALKNAYEGRCYVE--SALMDMYAKCGRLDLSHYIFSKISAKDE 515

Query: 505 VGMWSSILRGCVAHGD 520
           V  W+S++     +G+
Sbjct: 516 V-TWNSMISSFAQNGE 530


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 185/610 (30%), Positives = 300/610 (49%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ +C        GK +H + +K G        AN L+ MY + G+  DA+ +F+++
Sbjct: 261 LSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS-ANALVDMYAKVGDLADAISVFEKI 319

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
            + +  SWNA+I G +   H E++L+L   M +     N F+ +  +   A A +   E 
Sbjct: 320 KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALK--ACAGMGLKEL 377

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+HS ++   ++ D  +   LV++Y KC     A    N++ E D    +A+ISGY  
Sbjct: 378 GRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY-- 435

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                             S  W           ED EAL LF +M + G+  + +TL+++
Sbjct: 436 ------------------SQYW-----------EDMEALSLFVEMHKEGIGFNQTTLSTI 466

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L + + L  +   +QVHG + K G   D+ V ++L+D+Y K     DA ++F E  + D 
Sbjct: 467 LKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDL 526

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           +   +MIT Y+  G+ E                               EAL LF  M  +
Sbjct: 527 VSFTSMITAYAQYGQGE-------------------------------EALKLFLEMQDM 555

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
           +L+ D+F  +S+++ACAN+S+ E G+Q+   +   G   D     SLV+ Y KC      
Sbjct: 556 ELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDA 615

Query: 418 ---------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      G  AL LFN+M   GV P  IT  ++L AC+H 
Sbjct: 616 GRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHA 675

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV E + +F++M+  +   P  EHY+CM+DL  RAG +NEAV L+ +MPFEA+  +W +
Sbjct: 676 GLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGA 735

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L     H D  LGR+ AE +  L+PE +  ++ L++I+A++G+WE  + +R +MR+  V
Sbjct: 736 LLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKV 795

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 796 KKEPGMSWIE 805



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/550 (25%), Positives = 251/550 (45%), Gaps = 106/550 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L++C+    + +GKQ+H   +  G       +AN L+ MY +C    D+  LFDE+
Sbjct: 160 FSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVF-VANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P RN  SWNA+   ++++    +++ LF  M     + N+FS + +++  A   L     
Sbjct: 219 PERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVN--ACTGLRDSSR 276

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK IH +++  G D+D                                F  +AL+  YA 
Sbjct: 277 GKIIHGYLIKLGYDWDP-------------------------------FSANALVDMYAK 305

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G + DA  VF++      V WN++I+G + +    +AL L  +M+R+G+  +  TL+S 
Sbjct: 306 VGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSA 365

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L AC+ +G  E G+Q+H    K+ +  D+ V+  L+D YSK  +  DA   F+ L     
Sbjct: 366 LKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL----- 420

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                                     P K LI+WN++I G SQ    +EAL LF  M+K 
Sbjct: 421 --------------------------PEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKE 454

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
            +  ++ +L++++ + A +  + +  QV       G  SD  +  SL+D Y KC      
Sbjct: 455 GIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDA 514

Query: 418 ---------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      G +AL LF EM++  +KP     +++L+AC + 
Sbjct: 515 ERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANL 574

Query: 451 GLVKEGQKW-FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
              ++G++     +K+ + +D  I   + +V+++A+ G +++A     ++  E  +  WS
Sbjct: 575 SAFEQGKQLHVHILKYGFVLD--IFAGNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWS 631

Query: 510 SILRGCVAHG 519
           +++ G   HG
Sbjct: 632 AMIGGLAQHG 641



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 149/587 (25%), Positives = 265/587 (45%), Gaps = 117/587 (19%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + Y ++LL  C T  S+  G Q+H H  K G L+    I N L+ +Y +C N   A  
Sbjct: 55  TSVSY-SKLLSQCCTTKSLRPGLQIHAHITKSG-LSDDPSIRNHLINLYSKCRNFGYARK 112

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADL 118
           L DE    +  SW+A+I G+ + G    +L  F+ M     + N+F+++ ++   A + +
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLK--ACSIV 170

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  GKQ+H  ++V+G + D  + ++LV +Y KC +F                      
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF---------------------- 208

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                     D++R+FD   + + V WN++ S Y+  +   EA+ LF++M  +G+  +  
Sbjct: 209 ---------LDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEF 259

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           +L+S+++AC+ L     GK +HG+  K+G   D   A+AL+D Y+K G  +DA  +F ++
Sbjct: 260 SLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKI 319

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
           K  D                               ++SWN++I G   +    +AL+L  
Sbjct: 320 KQPD-------------------------------IVSWNAVIAGCVLHEHHEQALELLG 348

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC- 417
            M +  +  + F+L+S + ACA +   ELG Q+ + +  + ++SD  +S  LVD Y KC 
Sbjct: 349 QMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCD 408

Query: 418 -------------------------GY-------DALALFNEMRNTGVKPTIITFTAILS 445
                                    GY       +AL+LF EM   G+     T + IL 
Sbjct: 409 LLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILK 468

Query: 446 ACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           +     +V   ++    ++K  +H D  I   + ++D + +   + +A  + E+     D
Sbjct: 469 STAGLQVVHVCRQVHGLSVKSGFHSD--IYVVNSLIDSYGKCSHVEDAERIFEECTI-GD 525

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERM--IELDPE--------NACA 541
           +  ++S++     +G      K+   M  +EL P+        NACA
Sbjct: 526 LVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACA 572



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 88/347 (25%)

Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
           ++D +   + + + +      + + + +LS C +   L  G Q+H H  K G+ DD    
Sbjct: 35  SQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDD---- 90

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
                       PS               + N +I +YS C     A+ +        L+
Sbjct: 91  ------------PS---------------IRNHLINLYSKCRNFGYARKLVDESSEPDLV 123

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           SW+++I G +QNG    AL  F  M+ L ++ ++F+ +SV+ AC+ +  L +G+QV   V
Sbjct: 124 SWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVV 183

Query: 396 TIIGLDSDQIISTSLVDFYCKCGY---------------------------------DAL 422
            + G + D  ++ +LV  Y KC                                   +A+
Sbjct: 184 VVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAV 243

Query: 423 ALFNEMRNTGVKPTIITFTAILSACD-----------HCGLVKEGQKWFDAMKWQYHIDP 471
            LF EM  +G+KP   + +++++AC            H  L+K G  W          DP
Sbjct: 244 GLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW----------DP 293

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
                + +VD++A+ G L +A+++ E++  + D+  W++++ GCV H
Sbjct: 294 --FSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLH 337


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 182/609 (29%), Positives = 303/609 (49%), Gaps = 107/609 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    S ++GKQ+H   +K   ++ +L +AN  L MY + G   DA  LF  +P +
Sbjct: 442 ILGACTYLSSFYLGKQVHCVTIKN-CMDISLFVANATLDMYSKYGAIGDAKALFSLIPYK 500

Query: 71  NCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  SWNA+  G  +   +E      K ++L  + P  +D S++  I+  A +++ A E G
Sbjct: 501 DSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITP--DDVSFSTAIN--ACSNIRATETG 556

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQIH   +  G+  +  +GSSL++LY K GD  S+                         
Sbjct: 557 KQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESS------------------------- 591

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                 R++F +   +S V  N++I+G++ NN + EA+ LF ++ ++G+   + T +S+L
Sbjct: 592 ------RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSIL 645

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S CS       GKQVH +  K GV+ D                              DT+
Sbjct: 646 SGCSGSLNSAIGKQVHCYTLKSGVLYD------------------------------DTL 675

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           L  ++  +Y     +EDA  +   MP+ K+L  W ++I G +QNG    +L  F  M   
Sbjct: 676 LGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHC 735

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
           ++R D+ + ASV+ AC+++++   G+++   +T  G  S +  +++L+D Y KCG     
Sbjct: 736 NVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISS 795

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +AL LF +M    +KP  +TF  +L AC H
Sbjct: 796 FEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTH 855

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GL+ EG+ +F +M+  Y + P ++HY+C +DL  R G L EA   I+Q+PF  D  +W+
Sbjct: 856 SGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWA 915

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           + L  C  H D+  G+  A +++EL+P+ +  Y+ LSS+ A +G W ++ + R+ MREK 
Sbjct: 916 TYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKG 975

Query: 570 VGKLPGCSW 578
           V K PGCSW
Sbjct: 976 VAKFPGCSW 984



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 153/624 (24%), Positives = 256/624 (41%), Gaps = 186/624 (29%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+    +  G+Q+H   +K G  +S    A  L+ MY +CG+  +A  +FD +
Sbjct: 171 LAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAA-LVDMYAKCGDVPNARRVFDGI 229

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------------------------------- 96
              +   W++MI  + ++G  +++L LF+                               
Sbjct: 230 ACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHAT 289

Query: 97  ----VMPQKNDFSWNMLISGFAK---------------------------------ADLA 119
                MP  +  +WN +ISG A+                                 A++ 
Sbjct: 290 ALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMK 349

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A   G+Q+H+  +++GLD +  +GSSL+NLY K                           
Sbjct: 350 AFVEGQQMHAAAVMHGLDANVFVGSSLINLYAK--------------------------- 382

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               CG  +DA+ VFD + + + VMWN+M++G++ N    EA+ +F  M R  +  D  T
Sbjct: 383 ----CGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFT 438

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             S+L AC+ L     GKQVH    K  +   + VA+A LD YSK G   DA        
Sbjct: 439 FVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA-------- 490

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                                  K +F  +P K  ISWN++ VGL+QN    EA+ +   
Sbjct: 491 -----------------------KALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKR 527

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M    +  D  S ++ I+AC+NI + E G+Q+       G+ S+  + +SL+D Y K G 
Sbjct: 528 MRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGD 587

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+ LF ++   G+KP+ +TF++ILS 
Sbjct: 588 VESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSG 647

Query: 447 CD-----------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
           C            HC  +K G  + D +               +  ++ ++  L +A  L
Sbjct: 648 CSGSLNSAIGKQVHCYTLKSGVLYDDTLLG-----------VSLAGIYLKSKMLEDANKL 696

Query: 496 IEQMPFEADVGMWSSILRGCVAHG 519
           + +MP   ++  W++I+ G   +G
Sbjct: 697 LTEMPDHKNLFEWTAIISGYAQNG 720



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 183/458 (39%), Gaps = 100/458 (21%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           + +H  IL  G      LG SLV LY K G    A   L    E      S+L+S +A  
Sbjct: 86  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 145

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G   D    F     T+                              G   D   LA VL
Sbjct: 146 GSPGDVLGAFRYIRCTA------------------------------GGRPDQFGLAVVL 175

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SACS +G L +G+QVH    K G    V   +AL+D Y+K G   +A ++F  +   DTI
Sbjct: 176 SACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTI 235

Query: 305 LLNTMITVY-----------------------------------SSCGRIEDAKHIFRTM 329
             ++MI  Y                                   +S GR++ A  + + M
Sbjct: 236 CWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKM 295

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           P  S ++WN++I G +Q+G     L L+ +M    L   + + AS++SA AN+ +   G+
Sbjct: 296 PTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQ 355

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------------- 418
           Q+ A   + GLD++  + +SL++ Y KCG                               
Sbjct: 356 QMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNE 415

Query: 419 --YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
              +A+ +F  M    ++    TF +IL AC +      G K    +  +  +D  +   
Sbjct: 416 LPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG-KQVHCVTIKNCMDISLFVA 474

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           +  +D++++ G + +A  L   +P++  +  W+++  G
Sbjct: 475 NATLDMYSKYGAIGDAKALFSLIPYKDSIS-WNALTVG 511



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 18/225 (8%)

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF----CNM 360
           L ++++ +Y   GR+  A         ++  + +S++   +++GSP + L  F    C  
Sbjct: 103 LGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTA 162

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                R D+F LA V+SAC+ +  L  G QV   V   G  S      +LVD Y KCG  
Sbjct: 163 GG---RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDV 219

Query: 419 YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
            +A  +F+ +      P  I ++++++     G  +E    F  M  +    P+      
Sbjct: 220 PNARRVFDGI----ACPDTICWSSMIACYHRVGCYQEALALFSRMD-KMGSAPDQVTLVT 274

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
           ++   A +G L+ A  L+++MP  + V  W++++ G   H   GL
Sbjct: 275 IISTLASSGRLDHATALLKKMPTPSTVA-WNAVISG---HAQSGL 315



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C+   +   GK++H    K G   S     + L+ MY +CG+   +   F E+
Sbjct: 744 FASVLKACSDVTAFADGKEIHGLITKSG-FGSYETATSALIDMYSKCGDVISSFEAFKEL 802

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
             +++   WN+MI GF K G+ +++L LF  M +
Sbjct: 803 KNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEE 836


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 198/673 (29%), Positives = 305/673 (45%), Gaps = 135/673 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C     +  G+ +    +K G       +   ++ +Y +C +   A+  F  M
Sbjct: 251 FSSILTACAALEELEFGRGVQGWVIKCGAGEDVF-VGTAIIDLYAKCRDMDQAVKEFLRM 309

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
           P RN  SW  +I GF++      +   F  M +  +   N  I+    A  +   ++   
Sbjct: 310 PIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAV 369

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK------------------ 167
           Q+HS I   G   DS + S+L+N+Y K G  + + +V   M+                  
Sbjct: 370 QLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQS 429

Query: 168 ------------------EPDDFCLSALIS------------------------------ 179
                              PD FC S+++S                              
Sbjct: 430 GSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSSL 489

Query: 180 --GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
              Y+ CG + ++  VF++  D  +V W SMI+G+  ++   +A+ LF +M    +  D 
Sbjct: 490 FTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQ 549

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            TL + L+ACS+L  LE GK+VHG+A +  V  +V+V  AL++ YSK             
Sbjct: 550 MTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSK------------- 596

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                             CG I  A+ +F  +P K   S +S++ G +QNG   +AL LF
Sbjct: 597 ------------------CGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLF 638

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             +   DL +D F+++SVI A A ++SL++G Q+ A VT +GL+++  + +SLV  Y KC
Sbjct: 639 HEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKC 698

Query: 418 G---------------------------------YDALALFNEMRNTGVKPTIITFTAIL 444
           G                                  +AL +++ MR  G KP  +TF  +L
Sbjct: 699 GSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVL 758

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           SAC H G+V+EG    ++M  +Y I+P   HY+CMVDL  R+G L EA   I  MP E D
Sbjct: 759 SACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPD 818

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
             +W  +L  C  HGD  LGR  A+R+IEL+P  A AY+ LS+I A  G WE    IR +
Sbjct: 819 ALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSL 878

Query: 565 MREKHVGKLPGCS 577
           M    V K PG S
Sbjct: 879 MEGTGVKKEPGWS 891



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 138/562 (24%), Positives = 235/562 (41%), Gaps = 125/562 (22%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K LH HFLK  IL S   + N L+  Y +  +   AL LFD+ P  N  SWN +I G  +
Sbjct: 65  KILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQ 124

Query: 85  LGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
               E S + F  M       N F++  ++S  A   L +  YG+ ++S  L NG   + 
Sbjct: 125 NFSFEDSWRNFCKMRFSGFDPNQFTYGSVLS--ACTALGSPLYGELVYSLALKNGFFSNG 182

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            + + +++L+ K   F                                DA RVF      
Sbjct: 183 YVRAGMIDLFAKLCSFE-------------------------------DALRVFQDVLCE 211

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           + V WN++ISG + N E+  AL LF +M     + ++ T +S+L+AC++L  LE G+ V 
Sbjct: 212 NVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQ 271

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G   K G  +DV V +A++D Y+K                               C  ++
Sbjct: 272 GWVIKCGAGEDVFVGTAIIDLYAK-------------------------------CRDMD 300

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            A   F  MP ++++SW ++I G  Q    I A   F  M K+  +++ +++ SV++AC 
Sbjct: 301 QAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACT 360

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------- 419
               ++   Q+ + +   G   D  +S++L++ Y K G                      
Sbjct: 361 EPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWA 420

Query: 420 -------------DALALFNEMRNTGVKPTIITFTAILSACD--------HCGLVKEGQK 458
                         A+ LF  M   G++P     +++LS  D        HC ++K G  
Sbjct: 421 VMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIG-- 478

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
                     +  +I   S +  ++++ G L E+  + EQMP + +V  W+S++ G   H
Sbjct: 479 ----------LFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVS-WASMITGFSEH 527

Query: 519 GDKGLGRKVAERMI--ELDPEN 538
                  ++   M+  E+ P+ 
Sbjct: 528 DHAEQAVQLFREMLLEEIRPDQ 549



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 133/547 (24%), Positives = 238/547 (43%), Gaps = 108/547 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    S   G+ ++   LK G  ++    A  ++ ++ +  +  DAL +F ++   
Sbjct: 153 VLSACTALGSPLYGELVYSLALKNGFFSNGYVRAG-MIDLFAKLCSFEDALRVFQDVLCE 211

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           N   WNA+I G +K      +L LF  M  +    N F+++ +++  A A L  LE+G+ 
Sbjct: 212 NVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILT--ACAALEELEFGRG 269

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +   ++  G   D  +G+++++LY KC D                               
Sbjct: 270 VQGWVIKCGAGEDVFVGTAIIDLYAKCRD------------------------------- 298

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           M+ A + F R    + V W ++ISG++  ++   A   F +MR+ G   +  T+ SVL+A
Sbjct: 299 MDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTA 358

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+    ++   Q+H    K G   D  V+SAL++ YSK G+                   
Sbjct: 359 CTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGV------------------- 399

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                       ++ ++ +FR M + K+L  W  MI   +Q+GS   A++LF  M +  L
Sbjct: 400 ------------VDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGL 447

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           R DKF  +SV+S    I SL LG  +   +  IGL +D  + +SL   Y KCG       
Sbjct: 448 RPDKFCSSSVLSI---IDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYT 504

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       A+ LF EM    ++P  +T TA L+AC     
Sbjct: 505 VFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHS 564

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           +++G++       +  +  E+     +V+++++ G +  A  + + +P + D    SS++
Sbjct: 565 LEKGKE-VHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLP-QKDQFSCSSLV 622

Query: 513 RGCVAHG 519
            G   +G
Sbjct: 623 SGYAQNG 629


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 186/607 (30%), Positives = 290/607 (47%), Gaps = 100/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC+      + +QLH H LK     + L   N L+ MY +     DA+ +F  +  +
Sbjct: 205 IVKSCSGLDDFKLARQLHAHVLKSE-FGADLIAQNALISMYTKFSQMADAINVFSRIIIK 263

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL---EYGKQI 127
           +  SW +MI GF +LG++ ++L  F  M  ++ +  N  + G A +  + L   + G+QI
Sbjct: 264 DLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQI 323

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H   +  GL  D   G SL ++Y KC                               G +
Sbjct: 324 HGLCIKFGLGSDLFAGCSLCDMYAKC-------------------------------GFL 352

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
             AR VF        V WN++I+G+ S +   E+   F +MR  G++ +  T+ S+L AC
Sbjct: 353 ESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCAC 412

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           S    L HG QVH +  K+G   D+ V                                N
Sbjct: 413 SEPVMLNHGIQVHSYIVKMGFNLDIPVC-------------------------------N 441

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           +++++YS C  + DA  +F  + NK+ ++SWN+++    Q     E L L   M    ++
Sbjct: 442 SLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIK 501

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  +L +V+ +   I+S E+G Q+   +   GL+ D  +S +L++ Y KCG        
Sbjct: 502 PDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKM 561

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +A  LF  MR  GVKP  ITF  IL+AC H G+V
Sbjct: 562 FDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMV 621

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG K +  M+  Y I P  EH SCMVDL ARAGCL+ A + I QMPF  DV +W ++L 
Sbjct: 622 EEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLA 681

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  HG+  +G++ AE ++++DP N+ A + L +I A+SG W+  + +R  MR   VGK+
Sbjct: 682 ACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKV 741

Query: 574 PGCSWAD 580
           PG SW +
Sbjct: 742 PGQSWIE 748



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 211/478 (44%), Gaps = 105/478 (21%)

Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
           A + L +LE+G++IH H+L      D +L + ++++YGK                     
Sbjct: 107 ACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGK--------------------- 145

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                     CG + +AR +FD     + V W SMISGY    E+  A+ L+ +M R+G 
Sbjct: 146 ----------CGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGH 195

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           + D  T  S++ +CS L   +  +Q+H H  K     D+I  +AL+  Y+K    +DA  
Sbjct: 196 IPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAIN 255

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +FS + + D                               LISW SMI G SQ G  +EA
Sbjct: 256 VFSRIIIKD-------------------------------LISWGSMIAGFSQLGYELEA 284

Query: 354 LDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           L  F  M ++   + ++F   S  SAC+ +   + G Q+       GL SD     SL D
Sbjct: 285 LCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCD 344

Query: 413 FYCKCGY---------------------------------DALALFNEMRNTGVKPTIIT 439
            Y KCG+                                 ++ + F++MR+TG+ P  +T
Sbjct: 345 MYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVT 404

Query: 440 FTAILSACDHCGLVKEG-QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
             ++L AC    ++  G Q     +K  +++D  I   + ++ ++++   LN+A+ + E 
Sbjct: 405 VLSLLCACSEPVMLNHGIQVHSYIVKMGFNLD--IPVCNSLLSMYSKCSNLNDALQVFED 462

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI--ELDPENACAYIQLSSIFATSGE 554
           +  +AD+  W+++L  C+     G   ++ + M    + P+    ++ L+++  +SG+
Sbjct: 463 IGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPD----HVTLTNVLVSSGQ 516



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 133/560 (23%), Positives = 234/560 (41%), Gaps = 109/560 (19%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
             L+ +C++  S+  G+++H H L        + + N +L MY +CG+  +A  +FD MP
Sbjct: 102 THLINACSSLRSLEHGRKIHRHMLTCN-YQPDMILQNHILSMYGKCGSLKEARNMFDSMP 160

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGKQ 126
            +N  SW +MI G+ + G ++ ++ L+  M +      +       K  + L   +  +Q
Sbjct: 161 LKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQ 220

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H+H+L       S  G+ L+                           +ALIS Y    +
Sbjct: 221 LHAHVL------KSEFGADLI-------------------------AQNALISMYTKFSQ 249

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLS 245
           M DA  VF R      + W SMI+G+     + EAL  F +M    V + +     S  S
Sbjct: 250 MADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFS 309

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS L   + G+Q+HG   K G+  D+    +L D Y+K                     
Sbjct: 310 ACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAK--------------------- 348

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     CG +E A+ +F  +    L++WN++I G +   +  E+   F  M    L
Sbjct: 349 ----------CGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGL 398

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALA 423
             +  ++ S++ AC+    L  G QV + +  +G + D  +  SL+  Y KC    DAL 
Sbjct: 399 VPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQ 458

Query: 424 LFNEMRNTGVKPTIITFTAILSAC-----------------------DHCG----LVKEG 456
           +F ++ N   K  I+++  +L+AC                       DH      LV  G
Sbjct: 459 VFEDIGN---KADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSG 515

Query: 457 QKWFDAMKWQYH-------IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
           Q     +  Q H       ++ +I   + +++++ + G L  A  + + +    D+  WS
Sbjct: 516 QIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIG-NPDIISWS 574

Query: 510 SILRGCVAHGDKGLGRKVAE 529
           S++   V +   G G++  E
Sbjct: 575 SLI---VGYAQAGCGKEAFE 591



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L S     S  VG Q+H   +K G LN  + ++N L+ MY +CG+   A  +FD +
Sbjct: 507 LTNVLVSSGQIASYEVGSQIHCFIMKSG-LNLDISVSNALINMYTKCGSLECARKMFDSI 565

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
              +  SW+++I G+ + G  +++ +LF  M
Sbjct: 566 GNPDIISWSSLIVGYAQAGCGKEAFELFRTM 596


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 210/741 (28%), Positives = 336/741 (45%), Gaps = 168/741 (22%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T+    + + Q C+   ++  GKQ H   +       T+ + N L+QMY++C +   A  
Sbjct: 40  TKKKTFSHIFQECSDRKALCPGKQAHARMILTE-FKPTVFVTNCLIQMYIKCSDLEFAFK 98

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122
           +FD MP+R+  SWNAM+ G+   G    + +LF+ MP+++  SWN LISG+    L   +
Sbjct: 99  VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGY----LHNGD 154

Query: 123 YGKQIHSHILVN--GLDFD----SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           + K I   + +   G  FD    +V+  S  +L    G        + M  + D    SA
Sbjct: 155 HRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSA 214

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+  YA C K++ + + F    + + V W+++I+G + N++    L LF +M++ GV   
Sbjct: 215 LLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVS 274

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
            ST ASV  +C+ L  L  G Q+HGHA K     DV++ +A LD Y K    SDA KLF+
Sbjct: 275 QSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFN 334

Query: 297 E-----LKVYDTILL--------------------------------------------- 306
                 L+ Y+ I++                                             
Sbjct: 335 SLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQ 394

Query: 307 ------NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN- 359
                 N ++ +Y  CG + +A  +F  M ++  +SWN++I    QNG+  + L LF + 
Sbjct: 395 SNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHN 454

Query: 360 --------------------------MNKLDLRMDKFSLASVISACANISSLEL------ 387
                                     M K +   D+ +  +V+S  A IS   L      
Sbjct: 455 RIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEE 514

Query: 388 -----------------------------------GEQVFARVTIIGLDSDQIISTSLVD 412
                                              G+Q+ A++    L SD  IS++LVD
Sbjct: 515 AQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVD 574

Query: 413 FYCKC---------------------------------GYDALALFNEMRNTGVKPTIIT 439
            Y KC                                 G +AL +F  M+   VKP   T
Sbjct: 575 MYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHAT 634

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           F A+L AC H GLV++G  +F +M   Y +DP++EHYSC+VD+  R+G +++A+ LIE M
Sbjct: 635 FLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGM 694

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           PFEAD  +W ++L  C  HG+  +  K A  +++L+PE++ AY+ LS+I+A +G W + +
Sbjct: 695 PFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVT 754

Query: 560 LIRDIMREKHVGKLPGCSWAD 580
            +R +MR   + K PGCSW +
Sbjct: 755 KLRKMMRFNGLKKEPGCSWIE 775


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 174/578 (30%), Positives = 302/578 (52%), Gaps = 44/578 (7%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +A  L+ M++RCG    A  LF  +     F  N+M+ G++K    + +L+LF+ MP+++
Sbjct: 195 VAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERD 254

Query: 103 DFSWNMLISGFAKADLA--ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
             SWNM++S  +++     AL+    + S     G+  DS   +S +    +        
Sbjct: 255 VVSWNMMVSALSQSGRVREALDMVVDMQS----KGVRLDSTTYTSSLTACARLSSLRWGK 310

Query: 161 Q----VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
           Q    V+  +   D +  SAL+  YA  G   +A+ VF+   D ++V W  +ISG++   
Sbjct: 311 QLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYG 370

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
             TE++ LF++MR   +  D   LA+++S C S   L  G+Q+H    K G I  V+V++
Sbjct: 371 CFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSN 430

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           +L+  Y+K      A  +F  +   D +   +MIT YS  G +  A+  F  M  K++I+
Sbjct: 431 SLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVIT 490

Query: 337 WNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           WN+M+    Q+G+  + L ++  M ++  +R D  +  ++   CA++ + +LG+Q+  R 
Sbjct: 491 WNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRT 550

Query: 396 TIIGLDSDQIISTSLVDFYCKCGY---------------------------------DAL 422
             +GL  D  ++ +++  Y KCG                                   A+
Sbjct: 551 VKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAI 610

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            +F+++   G KP  I++ A+LS C H GLV+EG+ +FD MK  ++I P +EH+SCMVDL
Sbjct: 611 EIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDL 670

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542
             RAG L EA +LI+ MP +    +W ++L  C  HG+  L    A+ + ELD  ++ +Y
Sbjct: 671 LGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSY 730

Query: 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           + ++ I+A +G+ + S+ IR +MR+K + K PG SW +
Sbjct: 731 MLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWME 768



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 152/586 (25%), Positives = 271/586 (46%), Gaps = 88/586 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA--LLLFD 65
            A  L+SC    ++   + LH   +  G L S + + N LL  Y+ CG  +DA  LLL D
Sbjct: 27  FADALRSCGARGALAGARALHGRLVAVG-LASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEY 123
            +   N  + N M+ G+ KLG    +++LF  MP ++  SWN L+SG+  ++  L +LE 
Sbjct: 86  -IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLET 144

Query: 124 GKQIHSH------------------------------ILVNGLDF--DSVLGSSLVNLYG 151
              +H                                 +V   D   DS + ++LV+++ 
Sbjct: 145 FLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFV 204

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           +CG  + A+++   +KEP  FC +++++GY     ++ A  +FD   +   V WN M+S 
Sbjct: 205 RCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSA 264

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
              +    EAL +   M+  GV  D++T  S L+AC+ L  L  GKQ+H    +     D
Sbjct: 265 LSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHID 324

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
             VASAL++ Y+K G     C                           ++AK +F ++ +
Sbjct: 325 PYVASALVELYAKSG-----C--------------------------FKEAKGVFNSLHD 353

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           ++ ++W  +I G  Q G   E+++LF  M    + +D+F+LA++IS C +   L LG Q+
Sbjct: 354 RNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQL 413

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDH 449
            +     G     ++S SL+  Y KC     A A+F  M     +  I+++T++++A   
Sbjct: 414 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN----EKDIVSWTSMITAYSQ 469

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE----ADV 505
            G V + +++FD M      +  +  ++ M+  + + G   + + + + M  E     D 
Sbjct: 470 VGNVAKAREFFDGMS-----EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDW 524

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIE----LDPENACAYIQLSS 547
             + ++ +GC   G   LG ++  R ++    +D   A A I + S
Sbjct: 525 VTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYS 570



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 186/410 (45%), Gaps = 47/410 (11%)

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF-SE 297
             A  L +C + G L   + +HG    VG+   V + + LL  Y   G  SDA +L   +
Sbjct: 26  AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           +   + I  N M+  Y+  GR+ DA  +F  MP + + SWN+++ G  Q+   + +L+ F
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 358 CNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
            +M++  D   + F+LA  + +C  +    L  Q+ A V       D  ++ +LVD + +
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 205

Query: 417 CGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
           CG   LA  LF  ++    +PT+    ++L+       V    + FD+M      + ++ 
Sbjct: 206 CGAVDLASRLFVRIK----EPTMFCRNSMLAGYVKTYGVDHALELFDSMP-----ERDVV 256

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHGDKGLGRKVAERM 531
            ++ MV   +++G + EA++++  M  +    D   ++S L  C        G+++  ++
Sbjct: 257 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQV 316

Query: 532 IE----LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCW 587
           I     +DP  A A ++L   +A SG ++++  + + + +++       +W         
Sbjct: 317 IRNLPHIDPYVASALVEL---YAKSGCFKEAKGVFNSLHDRN-----NVAWT-------- 360

Query: 588 FLDTMFLQLANFDEIKQHQSADFCDYIHGFDQARLPLSSKRSFVLGYLLS 637
            L + FLQ   F E            +  F+Q R  L +   F L  L+S
Sbjct: 361 VLISGFLQYGCFTE-----------SVELFNQMRAELMTLDQFALATLIS 399


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 179/599 (29%), Positives = 315/599 (52%), Gaps = 68/599 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  +++ G+   A  LF  MP ++  S+  M++  MK G    +++L+   P  +   +
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFF 214

Query: 107 NMLISGFAKADL---AALEYGKQIHSHILVNGL-------------DFDSVLG------- 143
             +ISGF + +L   A   + K +   +  N +             +FD  +G       
Sbjct: 215 TAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274

Query: 144 -----------SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
                      +SL+ LY + GD  +A +V + M+  D    +AL+  YA+ G ++ ARR
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARR 334

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           V D     + V W ++I+ +    +  EAL L+ +M  +G   + S  +SVLSAC++L  
Sbjct: 335 VLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQD 394

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L  G ++H +A K+G   ++ V+S+L+D Y K    + A ++F+ L   +T+  N++I+ 
Sbjct: 395 LRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISG 454

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           YS  G++ +A+ +F  MP ++ +SWN+MI G ++N    +AL+ F  M        + +L
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITL 514

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
           +SV+ ACAN+ SLE+G  V A +  +G++ +  + T+L D Y K G              
Sbjct: 515 SSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPE 574

Query: 419 -------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                               ++++LF +M   G+ P   TF AIL AC HCGLV++   +
Sbjct: 575 KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHY 634

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           F+ M+  + I P+ +HY+CMVD+ ARAGCL EA  L+ ++  E D   WSS+L  C  + 
Sbjct: 635 FETMQ-AHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYR 693

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +K +G + A+++ EL+ +N   Y+ LS+++A+ G+W+ ++  R +M+   + K  GCSW
Sbjct: 694 NKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSW 752



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 202/420 (48%), Gaps = 64/420 (15%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           +K  +   ++ + N L+ +Y+R G+   A  +FD+M  R+  SW A+++ +  LG  + +
Sbjct: 273 VKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGA 332

Query: 92  LQLFNVMPQKNDFSWNMLISGFAK---------------------------------ADL 118
            ++ + MP +N+ SW  LI+   +                                 A L
Sbjct: 333 RRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATL 392

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G +IH++ L  G   +  + SSL+++Y KC     A +V N + E +  C ++LI
Sbjct: 393 QDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLI 452

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           SGY+  GKM +A  +F++    +SV WN+MISGY  N    +AL  F+ M  +G +    
Sbjct: 453 SGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEI 512

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL+SVL AC++L  LE G+ VH    K+G+ D++ + +AL D Y+K              
Sbjct: 513 TLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKS------------- 559

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             G ++ ++ +F  MP K+ I+W +M+ GL++NG   E++ LF 
Sbjct: 560 ------------------GDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFE 601

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           +M +  +  ++ +  +++ AC++   +E     F  +   G+       T +VD   + G
Sbjct: 602 DMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAG 661



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 166/398 (41%), Gaps = 100/398 (25%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C T   +  G ++H + LK G  ++ L +++ L+ MY +C   T A  +F
Sbjct: 379 ISCFSSVLSACATLQDLRGGTRIHANALKMGS-STNLFVSSSLIDMYCKCKQCTYAQRVF 437

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------- 115
           + +P +N   WN++I G+   G   ++  LFN MP +N  SWN +ISG+A+         
Sbjct: 438 NSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALN 497

Query: 116 ------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
                                   A+L +LE G+ +H+ I+  G++ +  +G++L ++Y 
Sbjct: 498 YFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYA 557

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           K GD +S+ +V   M E ++                               + W +M+ G
Sbjct: 558 KSGDLDSSRRVFYQMPEKNN-------------------------------ITWTAMVQG 586

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG------KQVHG---- 261
              N    E++ LF  M  NG+  +  T  ++L ACS  G +E         Q HG    
Sbjct: 587 LAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPK 646

Query: 262 ---HACKVGVID-------------------DVIVASALL---DTYSKRGMPSDACKLFS 296
              + C V V+                    D    S+LL    TY  + +   A K   
Sbjct: 647 SKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLH 706

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           EL+  +T     +  +Y+SCG+ +DA      M   SL
Sbjct: 707 ELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASL 744



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 136/331 (41%), Gaps = 49/331 (14%)

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           ++T  ++ S   S G L     +H HA + G+  D  VAS LL  Y+      D  + F 
Sbjct: 80  SATSTTMPSYAPSSGCLPLVLSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFR 139

Query: 297 ELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +    D   +   + M++ +   G I  A+ +F  MP KS++S+ +M+  L + GS  +A
Sbjct: 140 DCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDA 199

Query: 354 LDLF--CNMNKL-------------DLRMDKF----------------SLASVISACANI 382
           ++L+  C ++ +             +L  D F                +L  VI AC   
Sbjct: 200 VELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGA 259

Query: 383 SSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIIT 439
              +L   V        L    I +  SL+  Y + G  A A  +F++M    V    ++
Sbjct: 260 GEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDV----VS 315

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           +TA+L      G +   ++  DAM  +  +      +  ++    + G   EA+ L  QM
Sbjct: 316 WTALLDVYADLGDLDGARRVLDAMPARNEVS-----WGTLIARHEQKGDTAEALKLYSQM 370

Query: 500 PFEA---DVGMWSSILRGCVAHGDKGLGRKV 527
             +    ++  +SS+L  C    D   G ++
Sbjct: 371 LADGCRPNISCFSSVLSACATLQDLRGGTRI 401


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 208/714 (29%), Positives = 327/714 (45%), Gaps = 140/714 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C     +  G+ +H     +G+    L  A  L  MY +C  P DA  +FD M   
Sbjct: 231 LLKLCAARADLATGRAVHAQLAARGLSPEALA-ATALANMYAKCRRPGDARRVFDRM--- 286

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
                                       P ++  +WN L++G+A+  LA    G  +   
Sbjct: 287 ----------------------------PARDRVAWNALVAGYARNGLAEAAVGMVVRMQ 318

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-----------SALIS 179
              +G   D+V   +LV++   C D     Q L   +E   F +           +A++ 
Sbjct: 319 -EEDGERPDAV---TLVSVLPACAD----AQALGACREVHAFAVRGGFDEQVNVSTAILD 370

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDAS 238
            Y  CG ++ AR+VFD   D +SV WN+MI GY  N + TEAL LF +M   GV + D S
Sbjct: 371 VYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVS 430

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
            LA+ L AC  LGFL+ G++VH    ++G+  +V V                        
Sbjct: 431 VLAA-LHACGELGFLDEGRRVHELLVRIGLESNVNV------------------------ 465

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                  +N +IT+Y  C R + A  +F  +  K+ +SWN+MI+G +QNGS  +A+ LF 
Sbjct: 466 -------MNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFS 518

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M   +++ D F+L S+I A A+IS       +      + LD D  + T+L+D Y KCG
Sbjct: 519 RMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG 578

Query: 419 YDALA---------------------------------LFNEMRNTGVKPTIITFTAILS 445
             ++A                                 LF EM+++G  P   TF ++LS
Sbjct: 579 RVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLS 638

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV EGQ++F +MK  Y ++P +EHY  MVDL  RAG L+EA + I++MP E  +
Sbjct: 639 ACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGI 698

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            ++ ++L  C  H +  L  + A+R+ EL+PE    ++ L++I+A +  W+  + +R  M
Sbjct: 699 SVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAM 758

Query: 566 REKHVGKLPGCSWADGIAFNCWFLDTMFLQLANF--DEIKQHQSADFCDYIHGFDQARLP 623
            +K + K PG           W +  +  ++  F        Q+ D          ARL 
Sbjct: 759 EKKGLQKTPG-----------WSIVQLKNEIHTFYSGSTNHQQAKDI--------YARLA 799

Query: 624 LSSKRSFVLGYLLSTLSLKVVYSNLCSSLVVPTRNEL--AYLLIRMVYGNILTI 675
              +    +GY+  T S+  V  ++ + L+     +L  AY LIR   G  + I
Sbjct: 800 KLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQI 853



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 144/325 (44%), Gaps = 77/325 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    ++   +++H  F  +G  +  + ++  +L +Y +CG    A  +FD M
Sbjct: 330 LVSVLPACADAQALGACREVHA-FAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGM 388

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             RN  SWNAMI+G+ + G   ++L LF  M  +     D S  +L +  A  +L  L+ 
Sbjct: 389 QDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVS--VLAALHACGELGFLDE 446

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK---------------- 167
           G+++H  ++  GL+ +  + ++L+ +Y KC   + A QV + +                 
Sbjct: 447 GRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQ 506

Query: 168 -------------------EPDDFCLSALIS---------------GY------------ 181
                              +PD F L ++I                GY            
Sbjct: 507 NGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYV 566

Query: 182 --------ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                   A CG+++ AR +F+   D   + WN+MI GY S+     A+ LF +M+ +G 
Sbjct: 567 LTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGK 626

Query: 234 LEDASTLASVLSACSSLGFLEHGKQ 258
           + + +T  SVLSACS  G ++ G++
Sbjct: 627 VPNETTFLSVLSACSHAGLVDEGQE 651



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 136/327 (41%), Gaps = 67/327 (20%)

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T  S+L  C++   L  G+ VH      G+  + + A+AL + Y+K   P DA ++F  +
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              D                                ++WN+++ G ++NG    A+ +  
Sbjct: 287 PARDR-------------------------------VAWNALVAGYARNGLAEAAVGMVV 315

Query: 359 NMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
            M + D  R D  +L SV+ ACA+  +L    +V A     G D    +ST+++D YCKC
Sbjct: 316 RMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKC 375

Query: 418 G---------------------------------YDALALFNEMRNTGVKPTIITFTAIL 444
           G                                  +ALALF  M   GV  T ++  A L
Sbjct: 376 GAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAAL 435

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
            AC   G + EG++  + +  +  ++  +   + ++ ++ +    + A  + +++ ++  
Sbjct: 436 HACGELGFLDEGRRVHELL-VRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTR 494

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERM 531
           V  W++++ GC  +G      ++  RM
Sbjct: 495 VS-WNAMILGCTQNGSSEDAVRLFSRM 520


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 186/607 (30%), Positives = 291/607 (47%), Gaps = 100/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC+      + +QLH H LK     + L   N L+ MY +     DA+ +F  +  +
Sbjct: 205 IVKSCSGLDDFKLARQLHAHVLKSE-FGADLIAQNALISMYTKFSQMADAINVFSRIIIK 263

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL---EYGKQI 127
           +  SW +MI GF +LG++ ++L  F  M  ++ +  N  + G A +  + L   + G+QI
Sbjct: 264 DLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQI 323

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H   +  GL  D   G SL ++Y KC                               G +
Sbjct: 324 HGLCIKFGLGSDLFAGCSLCDMYAKC-------------------------------GFL 352

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
             AR VF        V WN++I+G+ S +   E+   F +MR  G++ +  T+ S+L AC
Sbjct: 353 ESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCAC 412

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           S    L HG QVH +  K+G   D+ V                                N
Sbjct: 413 SEPVMLNHGIQVHSYIVKMGFNLDIPVC-------------------------------N 441

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           +++++YS C  + DA  +F  + NK+ ++SWN+++    Q     E L L   M    ++
Sbjct: 442 SLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIK 501

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  +L +V+ +   I+S E+G Q+   +   GL+ D  +S +L++ Y KCG        
Sbjct: 502 PDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKM 561

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +A  LF  MR  GVKP  ITF  IL+AC H G+V
Sbjct: 562 FDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMV 621

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG K +  M+  Y I P  EH SCMVDL ARAGCL+ A + I+QMPF  DV +W ++L 
Sbjct: 622 EEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLA 681

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  HG+  +G++ AE ++++DP N+ A + L +I A+SG W+  + +R  MR   VGK+
Sbjct: 682 ACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKV 741

Query: 574 PGCSWAD 580
           PG SW +
Sbjct: 742 PGQSWIE 748



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 211/478 (44%), Gaps = 105/478 (21%)

Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
           A + L +LE+G++IH H+L      D +L + ++++YGK                     
Sbjct: 107 ACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGK--------------------- 145

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                     CG + +AR +FD     + V W SMISGY    E+  A+ L+ +M R+G 
Sbjct: 146 ----------CGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGH 195

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           + D  T  S++ +CS L   +  +Q+H H  K     D+I  +AL+  Y+K    +DA  
Sbjct: 196 IPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAIN 255

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +FS + + D                               LISW SMI G SQ G  +EA
Sbjct: 256 VFSRIIIKD-------------------------------LISWGSMIAGFSQLGYELEA 284

Query: 354 LDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           L  F  M ++   + ++F   S  SAC+ +   + G Q+       GL SD     SL D
Sbjct: 285 LCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCD 344

Query: 413 FYCKCGY---------------------------------DALALFNEMRNTGVKPTIIT 439
            Y KCG+                                 ++ + F++MR+TG+ P  +T
Sbjct: 345 MYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVT 404

Query: 440 FTAILSACDHCGLVKEG-QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
             ++L AC    ++  G Q     +K  +++D  I   + ++ ++++   LN+A+ + E 
Sbjct: 405 VLSLLCACSEPVMLNHGIQVHSYIVKMGFNLD--IPVCNSLLSMYSKCSNLNDALQVFED 462

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI--ELDPENACAYIQLSSIFATSGE 554
           +  +AD+  W+++L  C+     G   ++ + M    + P+    ++ L+++  +SG+
Sbjct: 463 IGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPD----HVTLTNVLVSSGQ 516



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 133/560 (23%), Positives = 234/560 (41%), Gaps = 109/560 (19%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
             L+ +C++  S+  G+++H H L        + + N +L MY +CG+  +A  +FD MP
Sbjct: 102 THLINACSSLRSLEHGRKIHRHMLTCN-YQPDMILQNHILSMYGKCGSLKEARNMFDSMP 160

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGKQ 126
            +N  SW +MI G+ + G ++ ++ L+  M +      +       K  + L   +  +Q
Sbjct: 161 LKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQ 220

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H+H+L       S  G+ L+                           +ALIS Y    +
Sbjct: 221 LHAHVL------KSEFGADLI-------------------------AQNALISMYTKFSQ 249

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLS 245
           M DA  VF R      + W SMI+G+     + EAL  F +M    V + +     S  S
Sbjct: 250 MADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFS 309

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS L   + G+Q+HG   K G+  D+    +L D Y+K                     
Sbjct: 310 ACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAK--------------------- 348

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     CG +E A+ +F  +    L++WN++I G +   +  E+   F  M    L
Sbjct: 349 ----------CGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGL 398

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALA 423
             +  ++ S++ AC+    L  G QV + +  +G + D  +  SL+  Y KC    DAL 
Sbjct: 399 VPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQ 458

Query: 424 LFNEMRNTGVKPTIITFTAILSAC-----------------------DHCG----LVKEG 456
           +F ++ N   K  I+++  +L+AC                       DH      LV  G
Sbjct: 459 VFEDIGN---KADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSG 515

Query: 457 QKWFDAMKWQYH-------IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
           Q     +  Q H       ++ +I   + +++++ + G L  A  + + +    D+  WS
Sbjct: 516 QIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIG-NPDIISWS 574

Query: 510 SILRGCVAHGDKGLGRKVAE 529
           S++   V +   G G++  E
Sbjct: 575 SLI---VGYAQAGCGKEAFE 591



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L S     S  VG Q+H   +K G LN  + ++N L+ MY +CG+   A  +FD +
Sbjct: 507 LTNVLVSSGQIASYEVGSQIHCFIMKSG-LNLDISVSNALINMYTKCGSLECARKMFDSI 565

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
              +  SW+++I G+ + G  +++ +LF  M
Sbjct: 566 GNPDIISWSSLIVGYAQAGCGKEAFELFRTM 596


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 184/607 (30%), Positives = 308/607 (50%), Gaps = 104/607 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q C    SI    ++  H LK+G  +S   + N+L+  Y++CG+   A  +FDE+P R
Sbjct: 83  LIQQCIGIKSITDITKIQSHALKRGFHHS---LGNKLIDAYLKCGSVVYARKVFDEVPHR 139

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM-PQ---KNDFSWNMLISGFAKADLAALEYGKQ 126
           +  +WN+MI  +++ G  ++++ ++  M P     ++F+++ +   F+  DL  +  G++
Sbjct: 140 HIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFS--DLGLVHEGQR 197

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
            H   +V G+   +V                              F  SAL+  YA  GK
Sbjct: 198 AHGQSVVLGVGVSNV------------------------------FVGSALVDMYAKFGK 227

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           M DAR V D+      V++ ++I GY  + ED E+L +F  M + G+  +  TL+SVL  
Sbjct: 228 MRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVC 287

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C +L  L  G+ +HG   K G+   V   ++LL                           
Sbjct: 288 CGNLEDLTSGRLIHGLIVKAGLESAVASQTSLL--------------------------- 320

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
               T+Y  CG ++D+  +F+   N + ++W S+IVGL QNG    AL  F  M +  + 
Sbjct: 321 ----TMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSIT 376

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            + F+L+SV+ AC++++ LE G+Q+ A V   GLD D+ +  +L+DFY KCG        
Sbjct: 377 PNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSV 436

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                    ++AL LF+ M++TG++P  +T+  +LSAC++ GL+
Sbjct: 437 FNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLL 496

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG   F + +   +I+   +HY+CMVDL  RAG L EA  LI Q+   +DV +W ++L 
Sbjct: 497 EEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLS 555

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  HGD  + ++V  R+I+L PE+   ++ LS+++A++G W K   ++  MRE  + K 
Sbjct: 556 ACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKN 615

Query: 574 PGCSWAD 580
           P  SW D
Sbjct: 616 PAMSWVD 622



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 8/197 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C++   +  GKQ+H   +K G L+    +   L+  Y +CG+   A  +F+ +
Sbjct: 382 LSSVLRACSSLAMLEQGKQIHAIVMKFG-LDIDKYVGAALIDFYGKCGSTEIARSVFNGL 440

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
              +  S N+MI  + + G   ++LQLF+ M     + N+ +W  ++S    A L  LE 
Sbjct: 441 LEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGL--LEE 498

Query: 124 GKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           G  I S    +G ++      + +V+L G+ G    A  ++N +   D      L+S   
Sbjct: 499 GCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACR 558

Query: 183 NCGKMNDARRVFDRTTD 199
             G +  A+RV +R  D
Sbjct: 559 IHGDVEMAKRVMNRVID 575


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 187/593 (31%), Positives = 286/593 (48%), Gaps = 103/593 (17%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H H  K G + S L + N L+ MY +CG+  DA L+FD M  R+  SWNAMI G  +
Sbjct: 254 KEVHKHAGKAGFI-SDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQ 312

Query: 85  LGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
            G   ++  +F  M Q+    +  ++  L++        A E+ K++H H +  GL  D 
Sbjct: 313 NGCGHEAFTIFLKMQQEGFVPDSTTYLSLLN--THVSTGAWEWVKEVHKHAVEVGLVSDL 370

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            +GS+ V++Y                                 CG ++DA+ +FD+    
Sbjct: 371 RVGSAFVHMY-------------------------------IRCGSIDDAQLIFDKLAVR 399

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           +   WN+MI G        EAL LF +MRR G   DA+T  ++LSA      LE  K+VH
Sbjct: 400 NVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVH 459

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
            +A   G++D                           L+V      N ++ +Y+ CG   
Sbjct: 460 SYAIDAGLVD---------------------------LRVG-----NALVHMYAKCGNTM 487

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            AK +F  M  +++ +W  MI GL+Q+G   EA  LF  M +  +  D  +  S++SACA
Sbjct: 488 YAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACA 547

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
           +  +LE  ++V +     GL SD  +  +LV  Y KCG                      
Sbjct: 548 STGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTV 607

Query: 419 -----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       DAL LF +M+  G KP   +F A+LSAC H GLV EG++ F ++   Y
Sbjct: 608 MIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDY 667

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
            I+P +EHY+CMVDL  RAG L EA + I  MP E     W ++L  CV +G+  +    
Sbjct: 668 GIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFA 727

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           A+  ++L P++A  Y+ LS+I+A +G WE+  L+R +M+ + + K PG SW +
Sbjct: 728 AKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIE 780



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 168/602 (27%), Positives = 272/602 (45%), Gaps = 123/602 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            I YL+ +L++C +  S+  GK++H H ++ G   S + +   L+ MY++CG+  DA L+
Sbjct: 30  EITYLS-ILKACCSPVSLKWGKKIHAHIIQSG-FQSDVRVETALVNMYVKCGSIDDAQLI 87

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
           FD+M  RN  SW  MI G    G  +++   F  M ++    N +++  +++  A A   
Sbjct: 88  FDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILN--ANASAG 145

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           ALE+ K++HSH +  GL  D  +G++LV++Y K G  + A  V + M E D F  + +I 
Sbjct: 146 ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIG 205

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           G A  G+                                 EA  LF +M R G L + +T
Sbjct: 206 GLAQHGR-------------------------------GQEAFSLFLQMERGGCLPNLTT 234

Query: 240 LASVL--SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
             S+L  SA +S G LE  K+VH HA K G I D+ V +AL+  Y+K             
Sbjct: 235 YLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAK------------- 281

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                             CG I+DA+ +F  M ++ +ISWN+MI GL+QNG   EA  +F
Sbjct: 282 ------------------CGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIF 323

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC-- 415
             M +     D  +  S+++   +  + E  ++V      +GL SD  + ++ V  Y   
Sbjct: 324 LKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRC 383

Query: 416 -------------------------------KCGYDALALFNEMRNTGVKPTIITFTAIL 444
                                          KCG +AL+LF +MR  G  P   TF  IL
Sbjct: 384 GSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNIL 443

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDP---EIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           SA     + +E  +W   +   Y ID    ++   + +V ++A+ G    A  + + M  
Sbjct: 444 SA----NVGEEALEWVKEVH-SYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDM-V 497

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE----NACAYIQLSSIFATSG--EW 555
           E +V  W+ ++ G   H   G G +     +++  E    +A  Y+ + S  A++G  EW
Sbjct: 498 ERNVTTWTVMISGLAQH---GCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEW 554

Query: 556 EK 557
            K
Sbjct: 555 VK 556



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 165/391 (42%), Gaps = 81/391 (20%)

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           MI GY       +A+ ++ +MRR G   +  T  S+L AC S   L+ GK++H H  + G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
              DV V +AL++ Y K                               CG I+DA+ IF 
Sbjct: 61  FQSDVRVETALVNMYVK-------------------------------CGSIDDAQLIFD 89

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
            M  +++ISW  MI GL+  G   EA   F  M +     + ++  S+++A A+  +LE 
Sbjct: 90  KMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEW 149

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKC------------------------------ 417
            ++V +     GL  D  +  +LV  Y K                               
Sbjct: 150 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQ 209

Query: 418 ---GYDALALFNEMRNTGVKPTIITFTAIL--SACDHCGL---VKEGQKWFDAMKWQYHI 469
              G +A +LF +M   G  P + T+ +IL  SA    G    VKE  K   A K  +  
Sbjct: 210 HGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHK--HAGKAGFIS 267

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           D  +   + ++ ++A+ G +++A  + + M  + DV  W++++ G       G G +   
Sbjct: 268 DLRVG--NALIHMYAKCGSIDDARLVFDGM-CDRDVISWNAMIGGLA---QNGCGHEAFT 321

Query: 530 RMIELDPE----NACAYIQLSSIFATSGEWE 556
             +++  E    ++  Y+ L +   ++G WE
Sbjct: 322 IFLKMQQEGFVPDSTTYLSLLNTHVSTGAWE 352



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 14/236 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  ++   K++H H +  G++ S L + N L+ MY +CG+  DA  +FD+M  R
Sbjct: 542 ILSACASTGALEWVKEVHSHAVNAGLV-SDLRVGNALVHMYAKCGSVDDARRVFDDMLER 600

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           + +SW  MI G  + G    +L LF  M     + N +S+  ++S  + A L   E  +Q
Sbjct: 601 DVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVD-EGRRQ 659

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALISGYANCG 185
             S     G++      + +V+L G+ G    A   +LNM  EP D    AL+      G
Sbjct: 660 FLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYG 719

Query: 186 KMNDA-----RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
            +  A      R+  +    S+ +  S I     N E  + LL+   M+R G+ ++
Sbjct: 720 NLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWE--QKLLVRSMMQRRGIRKE 773


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 193/609 (31%), Positives = 304/609 (49%), Gaps = 71/609 (11%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           + L++C  H  +  GK LH  ++K  +  ST  ++N  L +Y +C   + A  +FD    
Sbjct: 13  QFLKTCIAHRDLRTGKSLHALYIKSFVPTSTY-LSNHFLLLYSKCRRLSAARRVFDHTHD 71

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS 129
            N FS+N +I  + K  + E + QLF+ MPQ +  S+N LI+ +A+       +  Q+  
Sbjct: 72  CNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAF--QLFL 129

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL--SALISGYANCGKM 187
            +    LD D    S ++   G           L+++   D +    +ALI+ Y+  G +
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189

Query: 188 NDARRVFD-RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            +ARR+F   + D   V WNSM+  Y+ + E ++AL L+ +M   G++ D  TLASVL+A
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTA 249

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            +++  L  G Q H    K G   +  V S L+D YSK G     C L            
Sbjct: 250 FTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCG----GCML------------ 293

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS-QNGSPIEALDLFCNMNKLDL 365
                         D + +F  + N  L+ WN+MI G S       EAL+ F  +  +  
Sbjct: 294 --------------DCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGH 339

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG------ 418
           R D  SL  VISAC+N+SS   G QV      + + S++I ++ +L+  Y KCG      
Sbjct: 340 RPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAK 399

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                      + +L LF  M      PT ITF ++L+AC H G
Sbjct: 400 TLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTG 459

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V++G+ +F+ MK ++ I+PE  H+SCM+DL  RAG L+EA  LIE +PF+     WS++
Sbjct: 460 RVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSAL 519

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  HG+  L  K A R+++LDP NA  Y+ L++I++ +G  + ++ +R +MR++ V 
Sbjct: 520 LGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVK 579

Query: 572 KLPGCSWAD 580
           K PGCSW +
Sbjct: 580 KKPGCSWIE 588


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 176/570 (30%), Positives = 296/570 (51%), Gaps = 49/570 (8%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N  +  Y R G    A  +FDEMP +   SWN+M+ G+ +     ++  LF+ MP++N  
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SWN LISG+ K  + + E  K   +    N + +     +++V  Y + G  + A  +  
Sbjct: 80  SWNGLISGYVKNRMVS-EARKAFDTMPERNVVSW-----TAMVRGYVQEGLVSEAETLFW 133

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
            M E +    + ++ G     ++++AR +FD       V   +MISGY       EA  L
Sbjct: 134 QMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEAREL 193

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVIVASALLDTYS 283
           F +M R  V+   + ++         G++++G+  V     +V    + +  +A+L  Y+
Sbjct: 194 FDEMPRRNVISWTTMIS---------GYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYT 244

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           + G   +A +LF  + V   +  N MI  +   G +  A+ +F  +  K   +W++MI  
Sbjct: 245 QGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKV 304

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
             + G  +EAL+LF  M +  ++ +  SL SV+S CA+++SL+ G QV A +     DSD
Sbjct: 305 YERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSD 364

Query: 404 QIISTSLVDFYCKCG---------------------------------YDALALFNEMRN 430
             +++ L+  Y KCG                                  +AL +F+EM +
Sbjct: 365 VFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCS 424

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           +G+    +TF  +LSAC + G VKEG + F++MK +Y ++P+ EHY+CMVDL  RAG +N
Sbjct: 425 SGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVN 484

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           +A++LI++MP EAD  +W ++L  C  H +  L    A+++++L+P+NA  YI LS+I+A
Sbjct: 485 DAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYA 544

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           + G W   + +R  MR K V K PGCSW +
Sbjct: 545 SKGRWGDVAELRRNMRVKKVSKSPGCSWIE 574



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 125/272 (45%), Gaps = 27/272 (9%)

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            I  N+ I  Y+  G+IE A+ +F  MP+K ++SWNSM+ G  QN  P EA  LF     
Sbjct: 16  AIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLF----- 70

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIIS-TSLVDFYCKCGY- 419
                DK    + +S    IS       V  AR     +    ++S T++V  Y + G  
Sbjct: 71  -----DKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLV 125

Query: 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
            +A  LF +M    V    +++T +L        + E +  FD M  +     ++   + 
Sbjct: 126 SEAETLFWQMPEKNV----VSWTVMLGGLIQVRRIDEARGLFDIMPVK-----DVVARTN 176

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
           M+  + + G L EA  L ++MP   +V  W++++ G V +G   + RK+ E M E   +N
Sbjct: 177 MISGYCQEGRLAEARELFDEMP-RRNVISWTTMISGYVQNGQVDVARKLFEVMPE---KN 232

Query: 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
             ++  +   +   G  E++S + D M  K V
Sbjct: 233 EVSWTAMLMGYTQGGRIEEASELFDAMPVKAV 264



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 131/302 (43%), Gaps = 43/302 (14%)

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
           I  ++ +  Y++ G    A ++F E+     +  N+M+  Y    R  +A+++F  MP +
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER 76

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
           + +SWN +I G  +N    EA   F  M + ++     S  +++        +   E +F
Sbjct: 77  NTVSWNGLISGYVKNRMVSEARKAFDTMPERNV----VSWTAMVRGYVQEGLVSEAETLF 132

Query: 393 AR----------------VTIIGLDS-----------DQIISTSLVDFYCKCGY--DALA 423
            +                + +  +D            D +  T+++  YC+ G   +A  
Sbjct: 133 WQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARE 192

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
           LF+EM     +  +I++T ++S     G V   +K F+ M  +  +      ++ M+  +
Sbjct: 193 LFDEM----PRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVS-----WTAMLMGY 243

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543
            + G + EA  L + MP +A V   + IL G   +G+    R+V +++ E D     A I
Sbjct: 244 TQGGRIEEASELFDAMPVKAVVACNAMIL-GFGQNGEVAKARQVFDQIREKDDGTWSAMI 302

Query: 544 QL 545
           ++
Sbjct: 303 KV 304



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C +  S+  G+Q+H   +K    +S + +A+ L+ MY++CG+   A  +FD  
Sbjct: 333 LISVLSVCASLASLDHGRQVHAELVKSQ-FDSDVFVASVLITMYVKCGDLVKARQIFDRF 391

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
             ++   WN++I G+ + G  E++LQ+F+ M
Sbjct: 392 SPKDIVMWNSIITGYAQHGLVEEALQVFHEM 422


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 179/557 (32%), Positives = 287/557 (51%), Gaps = 72/557 (12%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAK 115
           A+ +F  +   N  SWN MI G         +L L+  M       N +++  L    AK
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           +   A + GKQIH+ IL  GL  D  + +SL+++Y + G    A++V +     D    +
Sbjct: 91  S--KAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYT 148

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           A+I+GYA+ G M+ A+++FD       V WN+MISGY       EAL LF++M +  V  
Sbjct: 149 AMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKP 208

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D ST+A+VLS C+  G +E G+Q+H                + +D +             
Sbjct: 209 DESTMATVLSTCTHSGNVELGRQIH----------------SWIDNHG----------FG 242

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
           S LK     L+N +I +YS CG +E A  +F  +  K +ISWN++I G +      EAL 
Sbjct: 243 SNLK-----LVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALL 297

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDF 413
           +F  M KL    +  ++ S++ ACA++ ++++G    V+    + G+ ++  + TSL+D 
Sbjct: 298 VFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDM 357

Query: 414 YCKCG--------YD-------------------------ALALFNEMRNTGVKPTIITF 440
           Y KCG        +D                         A  L + M+  G++P  ITF
Sbjct: 358 YAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITF 417

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H GL   G+K F +M   Y I+P++EHY CM+DL  R+G   EA  LI  M 
Sbjct: 418 VGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMT 477

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E D  +W S+L+ C  H +  LG  +A+++++++P+N  +Y+ LS+I+ATS  W+  + 
Sbjct: 478 MEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVAR 537

Query: 561 IRDIMREKHVGKLPGCS 577
           +R ++ +K + K+PGCS
Sbjct: 538 VRTLLNDKGLKKVPGCS 554


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 191/611 (31%), Positives = 300/611 (49%), Gaps = 106/611 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A + +SC    ++ VG QLH H LK     S + +    L MY +CG+  DA  +F+ +P
Sbjct: 281 ASVFRSCAGLSALKVGTQLHAHALKCD-FGSDITVGTATLDMYAKCGSLADAQRIFNSLP 339

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFA--KADLAALE 122
           + +   +NA+I G ++     ++LQ F ++ +     N+ S +   S  A  K DL    
Sbjct: 340 KHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLD--- 396

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+Q+HS      L   S L S++            AN +L+M               Y 
Sbjct: 397 -GRQLHS------LSVKSTLRSNIC----------VANSILDM---------------YG 424

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            C  +++A  +FD      +V WN++I+ +  N  + E L LF  M R  +  D  T  S
Sbjct: 425 KCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGS 484

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL ACSS   L  G ++H    K G+  D  V  AL+D Y K                  
Sbjct: 485 VLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCK------------------ 526

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG IE+AK I   +  ++++SWN++I G +      +A   F  M K
Sbjct: 527 -------------CGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLK 573

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
           + ++ D F+ A V+ ACAN++S+ LG+Q+  ++  + L SD  I+++LVD Y KCG    
Sbjct: 574 MSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQD 633

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +AL  F  M+   V+P   TF +IL AC H
Sbjct: 634 SALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAH 693

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            G + +G  +F+AM  +Y ++P+IEHYSCM+D+  R+G ++EA+ LI++MPFEAD  +W 
Sbjct: 694 MGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWR 753

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           ++L  C  HG+  +  K    +++L+PE++ A I LS+I+A +G W K S +R +MR   
Sbjct: 754 TLLSICKIHGNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNK 813

Query: 570 VGKLPGCSWAD 580
           + K PGCSW +
Sbjct: 814 LKKEPGCSWIE 824



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 239/503 (47%), Gaps = 48/503 (9%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           + T+I   + ++Q C+ ++S+  GKQ H   +  G +     I+N L++MY+RC +   A
Sbjct: 39  LPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVY-ISNCLMKMYLRCSHLNYA 97

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF------A 114
             +F++M +R+  S+N MI G+   G    + + F   P+++  SWN ++SGF       
Sbjct: 98  YKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECR 157

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           K+    L+ G+     +  +   F  VL +  V   G  G       ++ M    D    
Sbjct: 158 KSIDVFLDMGRS--EEVGFDQTTFAVVLKACSVLEDGGLG-IQVHGLIVRMGFYKDVVTG 214

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           SAL+  YA C +++D+ ++F      + V W+++I+G + N+E    L LF +M++ G+ 
Sbjct: 215 SALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIG 274

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
              S  ASV  +C+ L  L+ G Q+H HA K     D+ V +A LD Y+K G        
Sbjct: 275 VSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCG-------- 326

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                   + DA+ IF ++P  SL  +N++IVG  +N    EAL
Sbjct: 327 -----------------------SLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEAL 363

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
             F  + K  L  ++ SL+   SACA+I     G Q+ +      L S+  ++ S++D Y
Sbjct: 364 QFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMY 423

Query: 415 CKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
            KC    +A  +F+EM     +   +++ A+++A +  G  +E    F +M  +  ++P+
Sbjct: 424 GKCEALSEACCMFDEME----RRDAVSWNAVIAAHEQNGNEEETLNLFASM-LRLRMEPD 478

Query: 473 IEHYSCMVDLFARAGCLNEAVNL 495
              Y  ++   +    LN  + +
Sbjct: 479 QFTYGSVLKACSSQQALNSGMEI 501



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 142/570 (24%), Positives = 254/570 (44%), Gaps = 104/570 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C+      +G Q+H   ++ G     +   + LL MY +C    D+L +F E+
Sbjct: 179 FAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVT-GSALLDMYAKCKRLDDSLKIFSEI 237

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-ADLAALEYGK 125
           P +N   W+A+I G ++       L+LF  M +     S ++  S F   A L+AL+ G 
Sbjct: 238 PVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGT 297

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H+H L      D  +G++ +++Y KC                               G
Sbjct: 298 QLHAHALKCDFGSDITVGTATLDMYAKC-------------------------------G 326

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            + DA+R+F+     S   +N++I G + N +  EAL  F  + ++G+  +  +L+   S
Sbjct: 327 SLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFS 386

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+S+     G+Q+H  + K  +  ++ VA+++LD Y K    S+AC +F E++  D + 
Sbjct: 387 ACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVS 446

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N +I  +                                QNG+  E L+LF +M +L +
Sbjct: 447 WNAVIAAH-------------------------------EQNGNEEETLNLFASMLRLRM 475

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             D+F+  SV+ AC++  +L  G ++  R+   GL  D  +  +L+D YCKCG       
Sbjct: 476 EPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKK 535

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      DA + F EM    VKP   T+  +L AC +   
Sbjct: 536 IHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLAS 595

Query: 453 VKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           V  G++     +K + H D  I   S +VD++++ G + ++  + E+ P   D   W+++
Sbjct: 596 VGLGKQIHGQIIKLELHSDVYIT--STLVDMYSKCGNMQDSALVFEKAP-NKDFVTWNAM 652

Query: 512 LRGCVAH--GDKGLGRKVAERMIELDPENA 539
           + G   H  G++ LG     ++  + P +A
Sbjct: 653 ICGYAQHGLGEEALGYFERMQLENVRPNHA 682


>gi|357139571|ref|XP_003571354.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 190/639 (29%), Positives = 306/639 (47%), Gaps = 73/639 (11%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L  LL S      +   +QL     ++ +++ T      LL  Y   G+P  A L+FD+
Sbjct: 44  HLNALLTSYGRRGMLRDAQQLFDRMPRRDVISWTA-----LLTAYADNGDPASARLVFDD 98

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           MPRRN  SWNA++  +++ G    +  LF+ MP +N  S+  +ISG A+A +  L   + 
Sbjct: 99  MPRRNAASWNALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLARAGM--LREAEA 156

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           + + +     D   V  ++L+  Y + G+ + A +V   M   D    +A++ G    G 
Sbjct: 157 VFAEMPWRWRD--PVGSNALIAAYVRAGELSLALRVFEGMAVRDVISWTAVVDGLCKNGS 214

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +AR+VF+   + + V W SMI GY+      + LLLF  MRR GV  + +TL+  L A
Sbjct: 215 VLEARKVFEAMPERNVVSWTSMILGYVKLGRRRDGLLLFQNMRREGVQVNTTTLSVALDA 274

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+    +  G Q+HG    +G   DV +  +L+  YS+ G   DA ++F+ +   D +  
Sbjct: 275 CAESSLVREGIQIHGLIIAMGFEMDVFLGDSLITLYSRFGWMVDARRVFAYMTWKDVVSW 334

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL---------- 356
           N++IT Y     +E+A  +F+ MP K  +SW SM+VG +  G   EA++L          
Sbjct: 335 NSLITGYVQHNMVEEAHVLFKLMPEKDAVSWTSMVVGFANRGWITEAIELFEQMPGKDEV 394

Query: 357 ---------------------FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
                                FC M +   + +  + + ++SA A+++ L  G Q  A  
Sbjct: 395 AWTAVISSLVTNGDYLSAVRWFCRMAQEGCKPNTIAFSCLLSALASLTMLNQGMQAHAYA 454

Query: 396 TIIGLDSDQIISTSLVDFYCKCGY---------------------------------DAL 422
             +G   D  I TSLV  Y KCG                                  DA 
Sbjct: 455 INMGWIFDSSIHTSLVSMYAKCGRLAEAYHVFSSISNPSLIATNSMITAFVQHDLVEDAF 514

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LF +M+N G KP  +TF  IL+ C   GLV++G  +F +MK  Y I+P  +HY+CMVDL
Sbjct: 515 KLFTKMQNDGHKPNHVTFLGILTGCARAGLVQQGYNYFGSMKSVYGIEPNPDHYTCMVDL 574

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542
             RAG L EA+ +I  MP   +   W+++L     H      +  A++++E+DP +A AY
Sbjct: 575 LGRAGLLAEALEMINSMPQNDNSDAWAALLSASSLHSSLTFAKIAAQKLLEMDPYDATAY 634

Query: 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADG 581
             LS++F+++G      +++ +       K PG S   G
Sbjct: 635 TVLSNMFSSAGMKNDEEMLKVVQLSNMASKSPGYSLITG 673



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 183/382 (47%), Gaps = 39/382 (10%)

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           + P++  L+AL++ Y   G + DA+++FDR      + W ++++ Y  N +   A L+F 
Sbjct: 38  RGPNNAHLNALLTSYGRRGMLRDAQQLFDRMPRRDVISWTALLTAYADNGDPASARLVFD 97

Query: 227 KM-RRNGVLEDA-----------STLASVLSACSSLGFLEHGKQVHGHACKVGVI----- 269
            M RRN    +A           +   ++ S   +   + +G  + G A + G++     
Sbjct: 98  DMPRRNAASWNALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLA-RAGMLREAEA 156

Query: 270 ---------DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
                     D + ++AL+  Y + G  S A ++F  + V D I    ++      G + 
Sbjct: 157 VFAEMPWRWRDPVGSNALIAAYVRAGELSLALRVFEGMAVRDVISWTAVVDGLCKNGSVL 216

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
           +A+ +F  MP ++++SW SMI+G  + G   + L LF NM +  ++++  +L+  + ACA
Sbjct: 217 EARKVFEAMPERNVVSWTSMILGYVKLGRRRDGLLLFQNMRREGVQVNTTTLSVALDACA 276

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTII 438
             S +  G Q+   +  +G + D  +  SL+  Y + G+  DA  +F  M        ++
Sbjct: 277 ESSLVREGIQIHGLIIAMGFEMDVFLGDSLITLYSRFGWMVDARRVFAYM----TWKDVV 332

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           ++ ++++      +V+E    F  M      + +   ++ MV  FA  G + EA+ L EQ
Sbjct: 333 SWNSLITGYVQHNMVEEAHVLFKLMP-----EKDAVSWTSMVVGFANRGWITEAIELFEQ 387

Query: 499 MPFEADVGMWSSILRGCVAHGD 520
           MP + +V  W++++   V +GD
Sbjct: 388 MPGKDEVA-WTAVISSLVTNGD 408


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 178/557 (31%), Positives = 284/557 (50%), Gaps = 72/557 (12%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAK 115
           A+ +F+ +   N   WN M  G         +L+L+  M       N +S+  L+   AK
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           +   AL  G+QIH H+L  G D D  + +SL+++Y + G    A++V +          +
Sbjct: 78  SK--ALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYT 135

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           ALI+GYA+ G +N+AR++FD  +    V WN+MISGY+      EAL L+  M +  V  
Sbjct: 136 ALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKP 195

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D ST+ +V+SAC+  G +E G+Q+H        I+D              G  S+     
Sbjct: 196 DESTMVTVVSACAQSGSIELGRQLHS------WIED-------------HGFGSN----- 231

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                    ++N +I +YS CG +E A  +F+ +  K +ISWN++I G +      EAL 
Sbjct: 232 -------IKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALL 284

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDF 413
           LF  M +     +  ++ SV+ ACA++ ++++G    V+    + G+ +   + TSL+D 
Sbjct: 285 LFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDM 344

Query: 414 YCKCG--------YD-------------------------ALALFNEMRNTGVKPTIITF 440
           Y KCG        +D                         A  LF++MR  G+ P  ITF
Sbjct: 345 YAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITF 404

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H G++  G+  F +M   Y I P++EHY CM+DL    G   EA  +I  MP
Sbjct: 405 VGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMP 464

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E D  +W S+L+ C  H +  LG   A+ +I+++PEN  +Y+ LS+I+AT+G W++ + 
Sbjct: 465 MEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAK 524

Query: 561 IRDIMREKHVGKLPGCS 577
           IR ++ +K + K PGCS
Sbjct: 525 IRTLLNDKGIKKAPGCS 541



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 131/500 (26%), Positives = 234/500 (46%), Gaps = 60/500 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    ++  G+Q+H H LK G  +  + +   L+ MY + G   DA  +FD    R
Sbjct: 71  LLKSCAKSKALIEGQQIHGHVLKLG-YDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHR 129

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +  S+ A+I G+   G+   + +LF+ +  K+  SWN +ISG+ +      +   +++  
Sbjct: 130 HVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVET--CNFKEALELYKD 187

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGK 186
           ++   +  D     ++V+   + G      Q+ + +++     +   ++ LI  Y+ CG+
Sbjct: 188 MMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGE 247

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  A  +F        + WN++I G+   N   EALLLF +M R+G   +  T+ SVL A
Sbjct: 248 VETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 307

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ LG ++ G+ +H +  K   +  V  AS+                           LL
Sbjct: 308 CAHLGAIDIGRWIHVYINK--RLKGVTNASS---------------------------LL 338

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
            ++I +Y+ CG IE AK +F +M  +SL SWN+MI G + +G    A DLF  M K  + 
Sbjct: 339 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 398

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC------KCGYD 420
            D  +   ++SAC++   L+LG  +F       +  D  I+  L  + C       CG  
Sbjct: 399 PDDITFVGLLSACSHSGMLDLGRHIFR-----SMSQDYKITPKLEHYGCMIDLLGHCG-- 451

Query: 421 ALALFNE----MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-H 475
              LF E    +R   ++P  + + ++L AC     V+ G+ +   +     I+PE    
Sbjct: 452 ---LFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNL---IKIEPENPGS 505

Query: 476 YSCMVDLFARAGCLNEAVNL 495
           Y  + +++A AG  ++   +
Sbjct: 506 YVLLSNIYATAGRWDQVAKI 525


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 196/662 (29%), Positives = 309/662 (46%), Gaps = 139/662 (20%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+QLH   +K G L+  + +   L+  YM+  N  D   +FDEM  RN  +W  +I G+ 
Sbjct: 116 GRQLHCQCIKFGFLDD-VSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYA 174

Query: 84  KLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
           +    E+ L LF  M     Q N F++   +   A+  +     G Q+H+ ++ NGLD  
Sbjct: 175 RNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGG--RGLQVHTVVVKNGLDKT 232

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
             + +SL+NLY KC                               G +  AR +FD+T  
Sbjct: 233 IPVSNSLINLYLKC-------------------------------GNVRKARILFDKTEV 261

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            S V WNSMISGY +N  D EAL +F+ MR N V    S+ AS++  C++L  L   +Q+
Sbjct: 262 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQL 321

Query: 260 HGHACKVGVIDDVIVASALLDTYSK-----------------------RGMPS------- 289
           H    K G + D  + +AL+  YSK                         M S       
Sbjct: 322 HCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDG 381

Query: 290 --DACKLFSELK---------VYDTILL--------------------------NTMITV 312
             +A  LFSE+K          Y  IL                             ++  
Sbjct: 382 KEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDA 441

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           Y   G++++A  +F  + NK +++W++M+ G +Q G    A+ +F  + K  ++ ++F+ 
Sbjct: 442 YVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTF 501

Query: 373 ASVISACA-NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------ 419
           +S+++ CA   +S+  G+Q         LDS   +S++L+  Y K G+            
Sbjct: 502 SSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQR 561

Query: 420 ---------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                 AL +F EM+   VK   +TF  + +AC H GLV+EG+K
Sbjct: 562 EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEK 621

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
           +FD M     I P  EH SCMVDL++RAG L +A+ +I+ MP  A   +W +IL  C  H
Sbjct: 622 YFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVH 681

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
               LGR  AE++I + PE++ AY+ LS+++A SG+W++ + +R +M E++V K PG SW
Sbjct: 682 KKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSW 741

Query: 579 AD 580
            +
Sbjct: 742 IE 743



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/501 (24%), Positives = 210/501 (41%), Gaps = 104/501 (20%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGF-AKADLAA 120
           LFD+ P R+  S+ +++ GF + G  +++ +LF N+     +   ++  S     A L  
Sbjct: 53  LFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCD 112

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
             +G+Q+H   +  G   D  +G+SLV+ Y K  +F                        
Sbjct: 113 ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFK----------------------- 149

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
                   D R VFD   + + V W ++ISGY  N+ + E L LF +M+  G   ++ T 
Sbjct: 150 --------DGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTF 201

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A+ L   +  G    G QVH    K G+   + V+++L++ Y K G    A  LF + +V
Sbjct: 202 AAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV 261

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
              +  N+MI+ Y++                               NG  +EAL +F +M
Sbjct: 262 KSVVTWNSMISGYAA-------------------------------NGLDLEALGMFYSM 290

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
               +R+ + S AS+I  CAN+  L   EQ+   V   G   DQ I T+L+  Y KC   
Sbjct: 291 RLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAM 350

Query: 418 ----------GY---------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                     G+                     +A+ LF+EM+  GV+P   T++ IL+A
Sbjct: 351 LDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA 410

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
                ++   +     +K  Y     +   + ++D + + G ++EA  +   +    D+ 
Sbjct: 411 LP---VISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVDEAAKVFSGID-NKDIV 464

Query: 507 MWSSILRGCVAHGDKGLGRKV 527
            WS++L G    G+     K+
Sbjct: 465 AWSAMLAGYAQAGETEAAIKI 485



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 163/407 (40%), Gaps = 92/407 (22%)

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           AN++ N+      +C      G A+  ++  A  +FD++ D     + S++ G+  +   
Sbjct: 24  ANELGNLKPNFRIYCF-----GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRT 78

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            EA  LF  ++  G+  D S  +SVL   ++L     G+Q+H    K G +DDV V ++L
Sbjct: 79  QEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSL 138

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +DTY K     D   +F E+K                                +++++W 
Sbjct: 139 VDTYMKGSNFKDGRNVFDEMK-------------------------------ERNVVTWT 167

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           ++I G ++N    E L LF  M     + + F+ A+ +   A       G QV   V   
Sbjct: 168 TLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 227

Query: 399 GLDSDQIISTSLVDFYCKCG---------------------------------YDALALF 425
           GLD    +S SL++ Y KCG                                  +AL +F
Sbjct: 228 GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 287

Query: 426 NEMRNTGVKPTIITFTAILSACD-----------HCGLVKEGQKWFDAMKWQYHIDPEIE 474
             MR   V+ +  +F +I+  C            HC +VK G          +  D  I 
Sbjct: 288 YSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYG----------FVFDQNIR 337

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
             + ++  +++   + +A+ L ++  F  +V  W++++ G + +  K
Sbjct: 338 --TALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGK 382


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 188/615 (30%), Positives = 305/615 (49%), Gaps = 78/615 (12%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFD 65
            RL+Q C  H    VGKQLH       +L+S +P   + ++L+  Y + G+  DA  +F 
Sbjct: 7   GRLIQHCTDHLFFRVGKQLHARL----VLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFG 62

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAAL-- 121
           ++PR+N FSWNA++  +         L+LF+ +   N  D   +      A   LA+L  
Sbjct: 63  KIPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFS 122

Query: 122 --EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
                K++HS IL  GL++D                                F ++ALI+
Sbjct: 123 NSGLAKEVHSFILRRGLEYDI-------------------------------FVVNALIT 151

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDAS 238
            Y+ C ++  AR +FDR  +   V WN+M++GY       +   LF  M  +  V  +A 
Sbjct: 152 FYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNAL 211

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T  SVL AC+    L  G +VH    +  +  DV + +A++  Y+K G    A +LF E+
Sbjct: 212 TAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEM 271

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              D I   +MI+ Y   G +  A  +FR      L +WN++I GL QN     A+D+F 
Sbjct: 272 LEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFR 331

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M     R +  +LAS++   ++ S+L+ G+++         D +  ++T+++D Y KCG
Sbjct: 332 AMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCG 391

Query: 419 Y---------------------------------DALALFNEMRNTGVKPTIITFTAILS 445
           Y                                  AL+LF EM   G++P  +TFT++L+
Sbjct: 392 YLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLA 451

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H G + E  K F+ +  +Y I P +EHY+CMV + +RAG L++AV  I +MP E   
Sbjct: 452 ACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTA 511

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +W ++L G    GD  LG+ V +R+ E++PEN   Y+ ++++++ SG W+ +  IRD+M
Sbjct: 512 KVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLM 571

Query: 566 REKHVGKLPGCSWAD 580
           +E  + K+PG SW +
Sbjct: 572 KEVRLKKIPGNSWIE 586



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 147/344 (42%), Gaps = 46/344 (13%)

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           S    ++  C+   F   GKQ+H       V+ D  + S L+  YSK G           
Sbjct: 4   SAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSG----------- 52

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                                I DA ++F  +P K++ SWN++++  + +    + L LF
Sbjct: 53  --------------------SIRDAYNVFGKIPRKNIFSWNALLISYTLHNMHTDLLKLF 92

Query: 358 ---CNMNKLDLRMDKFSLASVISACANI-SSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
               N N  D++ D+F++   + A A++ S+  L ++V + +   GL+ D  +  +L+ F
Sbjct: 93  SSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITF 152

Query: 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
           Y +C  D L L   M +   +  I+++ A+L+     G  ++ ++ F  M     + P  
Sbjct: 153 YSRC--DELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNA 210

Query: 474 EHYSCMVDLFARAGCL---NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAER 530
                ++   A++  L    E    + +   + DV +W++++      G     R++ E 
Sbjct: 211 LTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEE 270

Query: 531 MIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           M+E D   A  Y  + S +   G   ++    D+ RE+   +LP
Sbjct: 271 MLEKD---AITYCSMISGYMVHGFVNQA---MDLFREQERPRLP 308


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 198/708 (27%), Positives = 333/708 (47%), Gaps = 136/708 (19%)

Query: 1   MDTRIDYLARLLQSCNTHHS----IHVGKQLHLHFLKK---GILNSTLPIANRLLQMYMR 53
           M   I   + L QS N  +     I++GKQ  +   K+    +++      N ++ ++ +
Sbjct: 1   MKLNIGTRSTLEQSKNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAK 60

Query: 54  CGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW------- 106
            G  +DA  LFD+M +RN  SWN MI G++     E++ +LF++M ++++FSW       
Sbjct: 61  NGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCY 120

Query: 107 -------------------------NMLISGFAKADLAALEYGKQIHSHILVNGL-DFDS 140
                                    N +I+G+AK      +  +++   + V  L  ++S
Sbjct: 121 TRKGMLEKARELFELVPDKLDTACWNAMIAGYAKK--GRFDDAEKVFEKMPVKDLVSYNS 178

Query: 141 VLGSSLVNLYGKCG----------------------------DFNSANQVLNMMKEPDDF 172
           +L     N  GK G                            D  SA ++   + +P+  
Sbjct: 179 MLAGYTQN--GKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAV 236

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
               ++ G+A  GK+ +AR++FDR    + V WN+MI+ Y+ + +  EA+ LF    +  
Sbjct: 237 SWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLF----KET 292

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGH------ACKV---------GVID------- 270
             +D  +  ++++    +G L+  ++V+        A K          G ID       
Sbjct: 293 PYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFS 352

Query: 271 -----DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
                D I  ++++  Y + G  S+A  LF ++ V + +  NTMI+ Y+  G ++ A  I
Sbjct: 353 QLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEI 412

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           F  M  +++ISWNS+I G  QNG  ++AL     M +   + D+ + A  +S+CAN+++L
Sbjct: 413 FEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAAL 472

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------------- 418
           ++G+Q+   +   G  +D  +S +L+  Y KCG                           
Sbjct: 473 QVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGY 532

Query: 419 ------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                  +A   F +M + G  P  +TF  +LSAC H GL  +G   F  M   + I+P 
Sbjct: 533 ALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPL 592

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
            EHYSC+VDL  R G L EA N++  M  +A+ G+W S+L  C  H +  LG+  A R++
Sbjct: 593 AEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLL 652

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           EL+P NA  YI LS++ A +G WE    +R +MRE+  GKLPGCSW +
Sbjct: 653 ELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWIE 700


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 180/592 (30%), Positives = 298/592 (50%), Gaps = 104/592 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+Q+H + +K G L+S + + N L+ +Y +CG   D+  +FDE+  RN  SWNA+I    
Sbjct: 128 GRQIHCYVVKTG-LDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLA 186

Query: 84  KLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
            L   + +L++F +M     + N  +++ ++      +L   ++GK+IH   L  GL   
Sbjct: 187 YLERNQDALEMFRLMIDGGVKPNSVTFSSMLP--VLVELKLFDFGKEIHGFSLRFGL--- 241

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
                                       E D F  +ALI  YA  G+   A  VF++  +
Sbjct: 242 ----------------------------ESDIFVANALIDMYAKSGRSLQASNVFNQIGE 273

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            + V WN+M++ +  N  +  A+ L  +M+ +G + ++ T  +VL AC+ +GFL  GK++
Sbjct: 274 KNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEI 333

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H  A + G   D+ V++AL D Y+K                               CG +
Sbjct: 334 HARAIRTGSSVDLFVSNALTDMYAK-------------------------------CGCL 362

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
             A+ +F+ +  +  +S+N +I+G SQ  +  E+L LF  M    +++D  S   VISAC
Sbjct: 363 NLARRVFK-ISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISAC 421

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA---------------- 423
           AN+++L+ G++V        L +   I+ +L+DFY KCG   LA                
Sbjct: 422 ANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWN 481

Query: 424 -----------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                            LF  M+  GV+   +++ A+LSAC H GLV+EG+K+F+ M+ Q
Sbjct: 482 SMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQ 541

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
            +I P   HY+CMVDL  RAG + EAV LIE +P E D  +W ++L  C  HG   L   
Sbjct: 542 -NIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHW 600

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            AE + +L P+++  Y  LS+++A +G+W++++ +R +M+ +   K PGCSW
Sbjct: 601 AAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSW 652



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 155/610 (25%), Positives = 274/610 (44%), Gaps = 107/610 (17%)

Query: 1   MDTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           M  R+D      +L++C    S+  G+++H    K G  +S + + N LL  Y  CG   
Sbjct: 1   MGVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLG-FDSDVFVGNTLLLFYGNCGGLK 59

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL 118
           D   +FDEM  R+  SWN++I  F   G   +++ LF  M  ++ F  NM+         
Sbjct: 60  DVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVC 119

Query: 119 AALE---YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           A LE    G+QIH +++  GLD    +G++LV++YGKCG                     
Sbjct: 120 AGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCG--------------------- 158

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS--GYISNNEDTEALLLFHKMRRNGV 233
                      + D+RRVFD  ++ + V WN++I+   Y+  N+D  AL +F  M   GV
Sbjct: 159 ----------YVKDSRRVFDEISERNGVSWNAIITSLAYLERNQD--ALEMFRLMIDGGV 206

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
             ++ T +S+L     L   + GK++HG + + G+  D+ VA+AL+D Y+K G       
Sbjct: 207 KPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSG------- 259

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                                   R   A ++F  +  K+++SWN+M+   +QN   + A
Sbjct: 260 ------------------------RSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAA 295

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           +DL   M       +  +  +V+ ACA I  L  G+++ AR    G   D  +S +L D 
Sbjct: 296 VDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDM 355

Query: 414 YCKCG--------------------------------YDALALFNEMRNTGVKPTIITFT 441
           Y KCG                                 ++L LF EM   G+K  ++++ 
Sbjct: 356 YAKCGCLNLARRVFKISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYM 415

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            ++SAC +   +K+G++    +  + H+   +   + ++D + + G ++ A  +  Q+P 
Sbjct: 416 GVISACANLAALKQGKE-VHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIP- 473

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKSSL 560
             D   W+S++ G    G+  +   + E M E   E ++ +YI + S  +  G  E+   
Sbjct: 474 SRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKK 533

Query: 561 IRDIMREKHV 570
             + M+ +++
Sbjct: 534 YFEHMQVQNI 543



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 8/173 (4%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    ++  GK++H   ++K  L++ L IAN LL  Y++CG    A  +F ++P R
Sbjct: 417 VISACANLAALKQGKEVHGLAVRKH-LHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSR 475

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWN+MI G+  LG    ++ LF  M +     +  S+  ++S  +   L  +E GK+
Sbjct: 476 DTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGL--VEEGKK 533

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
              H+ V  +    +  + +V+L G+ G    A +++  +  EPD     AL+
Sbjct: 534 YFEHMQVQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALL 586


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 175/518 (33%), Positives = 266/518 (51%), Gaps = 64/518 (12%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            KQ+H+H+L  G D D  + ++L+N +  C +   A +V N     D    +++++GY  
Sbjct: 232 AKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIE 291

Query: 184 CGKMNDAR-------------------------------RVFDRTTDTSSVMWNSMISGY 212
            G + +A+                               ++FD   +   V W+++I+ +
Sbjct: 292 IGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACF 351

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
             N    EA+  F  M + GV+ D     S LSAC++L  +  GK +H  + K+G    +
Sbjct: 352 QQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYI 411

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            + +AL+  YSK G    A KLF E  + D I  N+MI+ Y  C  +++AK IF +MP K
Sbjct: 412 NLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEK 471

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
            ++SW+SMI G +QN    E L LF  M     + D+ +L SVISACA +++LE G+ V 
Sbjct: 472 DVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVH 531

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG-------------------YDALAL--------- 424
           A +   GL  + I+ T+L+D Y KCG                   ++AL L         
Sbjct: 532 AYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVE 591

Query: 425 -----FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
                F+ M+   V P  ITF  +L AC H GLV EGQ  F +M   + I P ++HY CM
Sbjct: 592 SSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCM 651

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VDL  RAG L EA  L+ +MP   DV  W ++L  C  HGD  +GR+V  ++IEL P++ 
Sbjct: 652 VDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHD 711

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
             ++ LS+I+A+ G+W+    IR +M +  V K+PGCS
Sbjct: 712 GFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCS 749



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 45/341 (13%)

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
            YI  N    A  L+  M  N +  D  T   ++ ACS        KQVH H  K+G   
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS 246

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
           DV V + L++ +S     +DAC++F+E  V D++  N+++  Y   G +E+AKHI+  MP
Sbjct: 247 DVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP 306

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDL-------------------------------FCN 359
            +S+I+ NSMIV     G  +EA  L                               F  
Sbjct: 307 ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVG 366

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M+K+ + +D+    S +SACAN+  + +G+ + +    IG +S   +  +L+  Y KCG 
Sbjct: 367 MHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGD 426

Query: 420 DALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
             +A  LF+E         +I++ +++S    C LV   +  FD+M      + ++  +S
Sbjct: 427 IMVARKLFDE----AYLLDLISWNSMISGYLKCNLVDNAKAIFDSMP-----EKDVVSWS 477

Query: 478 CMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGC 515
            M+  +A+    +E + L ++M    F+ D     S++  C
Sbjct: 478 SMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISAC 518


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 196/661 (29%), Positives = 316/661 (47%), Gaps = 140/661 (21%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           H   +K G   +++  AN ++  Y +CG    A  +F E  +R+  SWN MI GF+ LG+
Sbjct: 22  HCLAIKSGT-TASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGN 80

Query: 88  KEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLG 143
            E +L+    M +     + +S+  ++ G A   +  +E G+Q+HS ++  G + +   G
Sbjct: 81  FETALEFLKSMKRYGFAVDGYSFGSILKGVAC--VGYVEVGQQVHSMMVKMGYEGNVFAG 138

Query: 144 SSLVNL-------------------------------YGKCGDFNSANQVLNMMK----E 168
           S+L+++                               Y + GD  +A  +L+ M+    E
Sbjct: 139 SALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVE 198

Query: 169 PDDFCLS-----------------------------------ALISGYANCGKMNDARRV 193
            DD   +                                   A+I+ Y+ CG + DA RV
Sbjct: 199 IDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERV 258

Query: 194 FDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           FD   +T   V WNSM++ Y+ NN++ EA  LF +M+  G   D  T  SV+SA      
Sbjct: 259 FDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSH 318

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
              GK +HG   K G+   V ++++L+  Y K                            
Sbjct: 319 QGQGKSLHGLVIKRGLEFLVPISNSLIAMYLK---------------------------- 350

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
            S    +++A +IF ++ NK  +SWNS++ G SQ+G   +AL  F NM    + +D ++ 
Sbjct: 351 -SHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAF 409

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDA--- 421
           ++V+ +C+++++L+LG+QV   V   G + +  +++SL+  Y KCG        +DA   
Sbjct: 410 SAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPK 469

Query: 422 ----------------------LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                                 L LF  M++  VK   ITF A+L+AC H GLV+EG  +
Sbjct: 470 DSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSF 529

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             +M+  Y I P +EHY+CM+DL  RAG L+EA  LIE MPFE D  +W ++L  C   G
Sbjct: 530 LKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCG 589

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579
           D  L  +VA  ++EL+PE  C Y+ LSS+F     W + + I+ +M+E+ V K+PG SW 
Sbjct: 590 DIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWI 649

Query: 580 D 580
           +
Sbjct: 650 E 650



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 99/200 (49%), Gaps = 17/200 (8%)

Query: 5   IDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           ID+ A   +L+SC+   ++ +G+Q+H+  LK G   +   +A+ L+ MY +CG   DA  
Sbjct: 404 IDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGF-VASSLIFMYSKCGVIEDARK 462

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADL 118
            FD  P+ +  +WN++I G+ + G  + +L LF +M  +    +  ++  +++  A + +
Sbjct: 463 SFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLT--ACSHI 520

Query: 119 AALEYG----KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFC 173
             +E G    K + S     G+       + +++L G+ G  + A  ++  M  EPD   
Sbjct: 521 GLVEEGWSFLKSMESDY---GIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMV 577

Query: 174 LSALISGYANCGKMNDARRV 193
              L+     CG +  A +V
Sbjct: 578 WKTLLGACRTCGDIELASQV 597


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 182/628 (28%), Positives = 310/628 (49%), Gaps = 114/628 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    S+  GK++H   +K   +     +  +L+ +Y  CG+  +   +FD M ++
Sbjct: 105 VLQLCAGSKSLTDGKKVH-SIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKK 163

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--------------------NDFSWNMLI 110
           N + WN M+  + K+G  ++S+ LF +M +K                    +  SWN +I
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMI 223

Query: 111 SGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM----- 165
           SG+    L   E G +I+  ++  G+D D     S++      G  +    V ++     
Sbjct: 224 SGYVSNGLT--ERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKST 281

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
            +   +F  + L+  Y+ CG ++ A RVF++  + + V W SMI+GY  +     A+ L 
Sbjct: 282 FERRINFS-NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLL 340

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M + GV  D     S+L AC+  G L++GK VH +     +  ++ V +AL+D Y+K 
Sbjct: 341 QQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTK- 399

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                                         CG ++ A  +F TM  K +ISWN+MI    
Sbjct: 400 ------------------------------CGSMDGANSVFSTMVVKDIISWNTMIG--- 426

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
                             +L+ D  ++A ++ ACA++S+LE G+++   +   G  SD+ 
Sbjct: 427 ------------------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRH 468

Query: 406 ISTSLVDFYCKCGY---------------------------------DALALFNEMRNTG 432
           ++ +LVD Y KCG                                  +A+A FNEMR+ G
Sbjct: 469 VANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAG 528

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           ++P  ++F +IL AC H GL+++G ++F  MK  ++I+P++EHY+CMVDL +R G L++A
Sbjct: 529 IEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKA 588

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
              IE +P   D  +W ++L GC  + D  L  KVAER+ EL+PEN   Y+ L++I+A +
Sbjct: 589 YEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEA 648

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +WE+   +R+ + +K + K PGCSW +
Sbjct: 649 EKWEEVKRMREKIGKKGLRKNPGCSWIE 676



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 220/484 (45%), Gaps = 69/484 (14%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK-ADLAALEYGKQIH 128
           R    +NA I  F +LG+ E +++L   M QK++       S     A   +L  GK++H
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELV-CMCQKSELETKTYSSVLQLCAGSKSLTDGKKVH 122

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           S I  N +  D VLG  LV+LY  CGD     +V + M++ + +  + ++S YA  G   
Sbjct: 123 SIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFK 182

Query: 189 D--------------------ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           +                    A  +FD+  D   + WNSMISGY+SN      L ++ +M
Sbjct: 183 ESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQM 242

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
              G+  D +T+ SVL  C++ G L  GK VH  A K      +  ++ LLD YSK    
Sbjct: 243 MYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSK---- 298

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                                      CG ++ A  +F  M  ++++SW SMI G +++G
Sbjct: 299 ---------------------------CGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG 331

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
               A+ L   M K  +++D  +  S++ ACA   SL+ G+ V   +    ++S+  +  
Sbjct: 332 RSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCN 391

Query: 409 SLVDFYCKCGY--DALALFNEMR-------NTGV---KPTIITFTAILSACDHCGLVKEG 456
           +L+D Y KCG    A ++F+ M        NT +   KP   T   IL AC     ++ G
Sbjct: 392 ALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERG 451

Query: 457 QKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           ++     ++  Y  D  + +   +VDL+ + G L  A  L + +P   D+  W+ ++ G 
Sbjct: 452 KEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIP-SKDLVSWTVMISGY 508

Query: 516 VAHG 519
             HG
Sbjct: 509 GMHG 512



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 54/308 (17%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  +  +L  C    ++ +GK +H     K      +  +N LL MY +CG+   A
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVH-SLAIKSTFERRINFSNTLLDMYSKCGDLDGA 305

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG---FAKAD 117
           L +F++M  RN  SW +MI G+ + G  + +++L   M +K     +++ +     A A 
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQM-EKEGVKLDVVATTSILHACAR 364

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK---------- 167
             +L+ GK +H +I  N ++ +  + ++L+++Y KCG  + AN V + M           
Sbjct: 365 SGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTM 424

Query: 168 ----EPDDFCLS-----------------------------------ALISGYANCGKMN 188
               +PD   ++                                   AL+  Y  CG + 
Sbjct: 425 IGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 484

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR +FD       V W  MISGY  +    EA+  F++MR  G+  D  +  S+L ACS
Sbjct: 485 LARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 544

Query: 249 SLGFLEHG 256
             G LE G
Sbjct: 545 HSGLLEQG 552


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 189/688 (27%), Positives = 322/688 (46%), Gaps = 145/688 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++ C   +++ +GK +    L+ G  +  + +A+ L+++Y   G   DA   FD+M  +
Sbjct: 16  VIKCCTGLNNVRLGKVIQDMILEMG-FDLDMFVASSLIKLYADNGCIEDARRFFDKMIDK 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALEYG 124
           +C  WN MI G+++ G  + +++LF  M      P    F+  + IS       A +EYG
Sbjct: 75  DCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSIS----CSEAMVEYG 130

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +Q+H  ++ +GLDF  ++G++LV +Y K                                
Sbjct: 131 RQLHGLVVRSGLDFVPLVGNTLVTVYSKGR------------------------------ 160

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
            ++ DAR++FD       V+WN MI GY+ N    +A +LF++M   G+  D+ T  S L
Sbjct: 161 -QLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFL 219

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDV-------------------------------I 273
            + +    L+  K++HG+  + GVI DV                               +
Sbjct: 220 PSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIV 279

Query: 274 VASALLDTYSKRGMPSDACKLFSEL-----------------------------KVYDTI 304
           + +A++  Y   GM  DA ++F  L                             +++  I
Sbjct: 280 IYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYI 339

Query: 305 LLN----------TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           + N           ++ +Y+ CGR++ A  IF  +  K  I WNS+I   SQ+G P EA+
Sbjct: 340 IKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAI 399

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LF  M    ++ D  ++++ +SACANI +L  G+++   +     +SD    ++L++ Y
Sbjct: 400 YLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMY 459

Query: 415 CKCGY---------------------------------DALALFNEMRNTGVKPTIITFT 441
            KCG                                  D+LALF+ M   G++P  ITF 
Sbjct: 460 AKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFL 519

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            ILS+C H G V++G ++F  M  +Y I  ++EHY+CM DLF RAG L+EA  +I  MPF
Sbjct: 520 TILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPF 579

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
                +W ++L  C  HG+  L    +  +++L+P+N+  Y+ L+ + A +G+W     I
Sbjct: 580 PPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKI 639

Query: 562 RDIMREKHVGKLPGCSWADGIAFNCWFL 589
           + +M+E+ V K+PGCSW +     C F 
Sbjct: 640 QHLMKERGVQKVPGCSWIEVNNTTCVFF 667



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 96/248 (38%), Gaps = 64/248 (25%)

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           GV  D  T   V+  C+ L  +  GK +     ++G   D+ VAS+L+  Y+  G   DA
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
            + F ++   D +L N MI  Y  CG  + A  +F+ M              +S    P 
Sbjct: 65  RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDM--------------MSSEAKP- 109

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
                           D  + A V+S   + + +E G Q+   V   GLD   ++  +LV
Sbjct: 110 ----------------DSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLV 153

Query: 412 DFYCK--------------------------CGY-------DALALFNEMRNTGVKPTII 438
             Y K                           GY       DA  LFNEM + G+KP  I
Sbjct: 154 TVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSI 213

Query: 439 TFTAILSA 446
           TFT+ L +
Sbjct: 214 TFTSFLPS 221



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 35/185 (18%)

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC------------ 415
           DK++   VI  C  ++++ LG+ +   +  +G D D  +++SL+  Y             
Sbjct: 9   DKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFF 68

Query: 416 -------------------KCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                              +CG    A+ LF +M ++  KP  +TF  +LS      +V+
Sbjct: 69  DKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVE 128

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            G++    +  +  +D      + +V ++++   L +A  L + MP + D+ +W+ ++ G
Sbjct: 129 YGRQ-LHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMP-QIDLVVWNRMIGG 186

Query: 515 CVAHG 519
            V +G
Sbjct: 187 YVQNG 191


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 191/608 (31%), Positives = 298/608 (49%), Gaps = 100/608 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A + +SC    +  +G QLH H LK     S + +    L MY +C N +DA  LF  +P
Sbjct: 262 ASVFRSCAGLSASRLGTQLHCHALKTD-FGSDVIVGTATLDMYAKCDNMSDAYKLFSLLP 320

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML-ISGF--AKADLAALEYGK 125
             N  S+NAMI G+ +     ++ +LF +  QKN FS++ + +SG   A A +     G 
Sbjct: 321 DHNLQSYNAMIIGYARNEQGFQAFKLF-LQLQKNSFSFDEVSLSGALSAAAVIKGHSEGL 379

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H      GL   S L S++            AN +L+M               Y  CG
Sbjct: 380 QLH------GLAIKSNLSSNIC----------VANAILDM---------------YGKCG 408

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            + +A  +FD       V WN++I+    N  + + L  F  M R+ +  D  T  SVL 
Sbjct: 409 ALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLK 468

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+      +G +VHG   K G+   + V SAL+D YSK                     
Sbjct: 469 ACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSK--------------------- 507

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     CG +E+A+ I   +  ++++SWN++I G S      ++   F +M ++ +
Sbjct: 508 ----------CGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGV 557

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             D F+ A+V+  CAN++++ LG+Q+ A++  + L SD  I+++LVD Y KCG       
Sbjct: 558 EPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLL 617

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +AL LF  M +  +KP   TF ++L AC H G 
Sbjct: 618 MFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGN 677

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
            K+G  +F  M   Y ++P++EHYSCMVD+  R+G + EA+ LI+ MPFEAD  +W ++L
Sbjct: 678 AKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLL 737

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C   G+  +  K A  +++LDPE++ AY  LS+I+A +G W++ S IR  MR  ++ K
Sbjct: 738 SICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKK 797

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 798 EPGCSWIE 805



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 167/700 (23%), Positives = 285/700 (40%), Gaps = 160/700 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + + Q C+   ++  GK+ H H +  G    T+ + N L+QMY++C     A  +F+EM
Sbjct: 27  FSHIFQECSNRRALKPGKEAHAHMILSG-FTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-SWNMLISGFAK----------- 115
           P+R+  SWN M+ G    G  E +  +FN MP   D  SWN LISG+ +           
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 116 ---ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
               DL  +     +   + +  L  D VLG   + ++G           + M  + D  
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLG---IQIHGI---------AVQMGFDYDVV 193

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
             SAL+  YA C  + D+  VF    D + + W++ I+G + N++    L LF +M+R G
Sbjct: 194 TGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKG 253

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS---------------- 276
           +    ST ASV  +C+ L     G Q+H HA K     DVIV +                
Sbjct: 254 IGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAY 313

Query: 277 ---------------ALLDTYSKRGMPSDACKLFSELK----VYDTILL----------- 306
                          A++  Y++      A KLF +L+     +D + L           
Sbjct: 314 KLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIK 373

Query: 307 ------------------------NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
                                   N ++ +Y  CG + +A  +F  M  +  +SWN++I 
Sbjct: 374 GHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIIT 433

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
              QN S  + L  F  M +  +  D+F+  SV+ ACA   +   G +V  R+   G+  
Sbjct: 434 ACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGL 493

Query: 403 DQIISTSLVDFYCKCGY---------------------------------DALALFNEMR 429
              + ++LVD Y KCG                                  D+   F+ M 
Sbjct: 494 KMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHML 553

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
             GV+P   T+  +L  C +   V  G K   A   +  +  ++   S +VD++++ G +
Sbjct: 554 EMGVEPDNFTYATVLDTCANLATVGLG-KQIHAQMIKLELLSDVYITSTLVDMYSKCGNM 612

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN----------- 538
           ++++ +  + P + D   W++++ G   H   GLG +  E    +  EN           
Sbjct: 613 HDSLLMFRKAP-KRDSVTWNAMICGFAYH---GLGEEALELFEHMLHENIKPNHATFVSV 668

Query: 539 --ACAYI-----------QLSSIFATSGEWEKSSLIRDIM 565
             AC+++           +++SI+A   + E  S + DI+
Sbjct: 669 LRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDIL 708



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 7/229 (3%)

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T + +   CS+   L+ GK+ H H    G    V V + L+  Y K      A K+F E+
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLF 357
              D +  NTM+   +  GR+E A+ +F +MP+   ++SWNS+I G  QNG   +++ +F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M  L +  D  +LA  +  C+ +    LG Q+      +G D D +  ++LVD Y KC
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 418 G--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
               D+L +F+E+ +       I+++A ++ C     +  G K F  M+
Sbjct: 206 NSLEDSLDVFSELPD----KNWISWSAAIAGCVQNDQLLRGLKLFKEMQ 250


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  297 bits (760), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 189/612 (30%), Positives = 301/612 (49%), Gaps = 104/612 (16%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           DY A LLQ C  +  +  G+++H   +  G   S L +   ++ +Y +C    +A  +F+
Sbjct: 147 DY-ACLLQLCGENLDLKKGREIHGLIITNG-FESNLFVMTAVMSLYAKCRQIDNAYKMFE 204

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKADLAALE 122
            M  ++  SW  ++ G+ + GH +++LQL   M    QK D S  ++    A AD+ AL 
Sbjct: 205 RMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPD-SVTLVSILPAVADMKALR 263

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+ IH +   +G +       SLVN+                         +AL+  Y 
Sbjct: 264 IGRSIHGYAFRSGFE-------SLVNV------------------------TNALLDMYF 292

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            CG    AR VF      + V WN+MI G   N E  EA   F KM   G +    T+  
Sbjct: 293 KCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMG 352

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL AC++LG LE G  VH                                KL  +LK+  
Sbjct: 353 VLLACANLGDLERGWFVH--------------------------------KLLDKLKLDS 380

Query: 303 TI-LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
            + ++N++I++YS C R++ A  IF  +  K+ ++WN+MI+G +QNG   EAL+LFC M 
Sbjct: 381 NVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQ 439

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
              +++D F+L  VI+A A+ S     + +        +D++  +ST+LVD Y KCG   
Sbjct: 440 SQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIK 499

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          + L LFNEM+   VKP  ITF +++SAC 
Sbjct: 500 TARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACS 559

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H G V+EG   F +M+  Y+++P ++HYS MVDL  RAG L++A N I++MP +  + + 
Sbjct: 560 HSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVL 619

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L  C  H +  LG K A+++ +LDP+    ++ L++I+A++  W+K + +R  M +K
Sbjct: 620 GAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDK 679

Query: 569 HVGKLPGCSWAD 580
            + K PGCSW +
Sbjct: 680 GLHKTPGCSWVE 691



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 131/561 (23%), Positives = 233/561 (41%), Gaps = 136/561 (24%)

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---------------------- 115
           +I  F K G   ++ ++F  +  K D  +++++ G+AK                      
Sbjct: 85  VISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLV 144

Query: 116 -ADLAA----------LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
             D A           L+ G++IH  I+ NG + +  + +++++LY KC   ++A ++  
Sbjct: 145 VGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFE 204

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
            M+  D    + L++GYA  G    A+R                            AL L
Sbjct: 205 RMQHKDLVSWTTLVAGYAQNGH---AKR----------------------------ALQL 233

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
             +M+  G   D+ TL S+L A + +  L  G+ +HG+A + G    V V +ALLD Y K
Sbjct: 234 VLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFK 293

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
                                          CG    A+ +F+ M +K+++SWN+MI G 
Sbjct: 294 -------------------------------CGSARIARLVFKGMRSKTVVSWNTMIDGC 322

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
           +QNG   EA   F  M        + ++  V+ ACAN+  LE G  V   +  + LDS+ 
Sbjct: 323 AQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNV 382

Query: 405 IISTSLVDFYCKC-------------------------GY-------DALALFNEMRNTG 432
            +  SL+  Y KC                         GY       +AL LF  M++ G
Sbjct: 383 SVMNSLISMYSKCKRVDIAASIFNNLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQG 442

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           +K    T   +++A     + ++  KW   +  +  +D  +   + +VD++A+ G +  A
Sbjct: 443 IKLDCFTLVGVITALADFSVNRQA-KWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTA 501

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD----PENACAYIQLSSI 548
             L + M  E  V  W++++ G   +G  G+G++  +   E+       N   ++ + S 
Sbjct: 502 RKLFDMMQ-ERHVITWNAMIDG---YGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISA 557

Query: 549 FATSGEWEKSSLIRDIMREKH 569
            + SG  E+  L+   M+E +
Sbjct: 558 CSHSGFVEEGLLLFKSMQEDY 578


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 186/619 (30%), Positives = 312/619 (50%), Gaps = 73/619 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    S   G  +H      G   +   + N L+ MY RCG   +A  +FDEM  R
Sbjct: 132 VLKACGEIPSFRCGASVHAVVFASGFEWNVF-VGNGLVSMYGRCGAWENARQVFDEMRER 190

Query: 71  ---NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM--LISGF-AKADLAALEYG 124
              +  SWN+++  +M+ G   +++++F  M +      +   L++   A A + A   G
Sbjct: 191 GVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 250

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQ+H + L +GL  D  +G+++V++Y KCG    AN+V   MK  D    +A+++GY+  
Sbjct: 251 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 310

Query: 185 GKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           G+ +DA  +F++  +     + V W+++I+GY       EAL +F +MR  G   +  TL
Sbjct: 311 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTL 370

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            S+LS C+  G L HGK+ H HA K  +  D                P D          
Sbjct: 371 VSLLSGCALAGTLLHGKETHCHAIKWILNLD-------------ENDPGD---------- 407

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFC 358
            D +++N +I +YS C   + A+ +F  +P  ++S+++W  +I G +Q+G   EAL+LF 
Sbjct: 408 -DLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFS 466

Query: 359 NMNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYC 415
            M + D  +  + F+++  + ACA + +L  G Q+ A V     +S  + ++  L+D Y 
Sbjct: 467 QMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYS 526

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           K G                                  +AL +F EM+  G+ P  +TF  
Sbjct: 527 KSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVV 586

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L AC H G+V +G  +F+ M   + + P  EHY+CMVDL +RAG L+EA+ LI  MP +
Sbjct: 587 VLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMK 646

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W ++L  C  + +  LG   A +++EL+  N  +Y  LS+I+A +  W+  + IR
Sbjct: 647 PTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIR 706

Query: 563 DIMREKHVGKLPGCSWADG 581
            +M+   + K PGCSW  G
Sbjct: 707 YLMKNTGIKKRPGCSWVQG 725



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 144/569 (25%), Positives = 263/569 (46%), Gaps = 93/569 (16%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D  + L   C    S+   + +H   L +G+ +        ++ MY+   +P  AL +  
Sbjct: 30  DLTSTLFHQCK---SLASAELIHQQLLVQGLPHDP----THIISMYLTFNSPAKALSVLR 82

Query: 66  EM--PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLA 119
            +       F WN +I   + LG  E  LQL+  M     + + +++  ++   A  ++ 
Sbjct: 83  RLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLK--ACGEIP 140

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +   G  +H+ +  +G +++  +G+ LV++YG+CG + +A QV + M+E           
Sbjct: 141 SFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRE----------- 189

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDAS 238
                      R V D       V WNS+++ Y+   +   A+ +F +M  + G+  DA 
Sbjct: 190 -----------RGVGDL------VSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAV 232

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           +L +VL AC+S+G    GKQVHG+A + G+ +DV V +A++D Y+K GM  +A K+F  +
Sbjct: 233 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 292

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEAL 354
           KV D +  N M+T YS  GR +DA  +F  +  + +    ++W+++I G +Q G   EAL
Sbjct: 293 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 352

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT--IIGLDS-----DQIIS 407
           D+F  M       +  +L S++S CA   +L  G++        I+ LD      D ++ 
Sbjct: 353 DVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVI 412

Query: 408 TSLVDFYCKC-----------------------------------GYDALALFNEM--RN 430
            +L+D Y KC                                     +AL LF++M   +
Sbjct: 413 NALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 472

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
             V P   T +  L AC   G ++ G++    +         +   +C++D+++++G ++
Sbjct: 473 NFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVD 532

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            A  + + M     V  W+S++ G   HG
Sbjct: 533 AARVVFDNMHQRNGVS-WTSLMTGYGMHG 560


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 183/628 (29%), Positives = 309/628 (49%), Gaps = 114/628 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    S   GK++H   +K   +     +  +L+  Y  CG+  +   +FD M ++
Sbjct: 105 VLQLCAGLKSFTDGKKVH-SIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKK 163

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--------------------NDFSWNMLI 110
           N + WN M+  + K+G  ++S+ LF +M +K                    +  SWN +I
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMI 223

Query: 111 SGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM----- 165
           SG+    L   E G  I+  ++  G+D D     S++      G  +    V ++     
Sbjct: 224 SGYVSNGLT--ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
            +   +F  + L+  Y+ CG ++ A RVF++  + + V W SMI+GY  +     A+ L 
Sbjct: 282 FERRINFS-NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M + GV  D   + S+L AC+  G L++GK VH +     +  ++ V +AL+D Y+K 
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAK- 399

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                                         CG +E A  +F TM  K +ISWN+MI    
Sbjct: 400 ------------------------------CGSMEAANSVFSTMVVKDIISWNTMIG--- 426

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
                             +L+ D  ++A V+ ACA++S+LE G+++   +   G  SD+ 
Sbjct: 427 ------------------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRH 468

Query: 406 ISTSLVDFYCKCGY---------------------------------DALALFNEMRNTG 432
           ++ +LVD Y KCG                                  +A+A FNEMR+ G
Sbjct: 469 VANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAG 528

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           ++P  ++F +IL AC H GL+++G ++F  MK  ++I+P++EHY+CMVDL +R G L++A
Sbjct: 529 IEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKA 588

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
              IE +P   D  +W ++L GC  + D  L  KVAER+ EL+PEN+  Y+ L++I+A +
Sbjct: 589 YEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEA 648

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +WE+   +R+ + ++ + K PGCSW +
Sbjct: 649 EKWEEVKRLREKIGKQGLRKNPGCSWIE 676



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 57/370 (15%)

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           RT D     +N+ I  +    +   A+ L    +++ +  +  T +SVL  C+ L     
Sbjct: 60  RTIDHQVTDYNAKILHFCQLGDLENAMELICMCKKSEL--ETKTYSSVLQLCAGLKSFTD 117

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           GK+VH       V  D  +   L+  Y+  G   +  ++F  ++  +  L N M++ Y+ 
Sbjct: 118 GKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177

Query: 316 CG--------------------RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            G                    R E A  +F  + ++ +ISWNSMI G   NG     L 
Sbjct: 178 IGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLG 237

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           ++  M  L + +D  ++ SV+  CAN  +L LG+ V +       +     S +L+D Y 
Sbjct: 238 IYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYS 297

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                   A+ L  +M   GVK  ++  T+
Sbjct: 298 KCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITS 357

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           IL AC   G +  G+   D +K   +++  +   + ++D++A+ G + EA N +      
Sbjct: 358 ILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSM-EAANSVFSTMVV 415

Query: 503 ADVGMWSSIL 512
            D+  W++++
Sbjct: 416 KDIISWNTMI 425


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  296 bits (758), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 191/661 (28%), Positives = 314/661 (47%), Gaps = 123/661 (18%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD---ALLLFD 65
           + L+Q C   +S   GK +H   +  G  N    +  ++L +Y R G   D   A  LF+
Sbjct: 75  SSLIQDCIDSNSFQRGKSIHTQMISNG-YNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLA 119
           EMP RN  +WN MI  + ++    ++  +F+ M      P    F+  + + G     L 
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCG----ALR 189

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-------------------------- 153
           + + GKQ+HS ++  G   D+ +G++L+++Y KC                          
Sbjct: 190 SRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIIS 249

Query: 154 -----GDFNSANQVLNMMKE------PDDFCLSALIS----------------------- 179
                G FN A  +   M+E      PD F  + L++                       
Sbjct: 250 AEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANI 309

Query: 180 ------------GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
                        Y+ CG++N A+ +F+R  + ++  WNSMI GY  N E  EAL LF +
Sbjct: 310 TKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQ 369

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M+ NG+  D  +L+S+LS+C SL   + G+++H    +  + ++ I+   L+D Y+K G 
Sbjct: 370 MQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGS 429

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
              A       KVYD  +                         +++   WNS++ G +  
Sbjct: 430 MDYA------WKVYDQTI-----------------------KKDRNTALWNSILAGYANK 460

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL-----ELGEQVFARVTIIGLDS 402
           G   E+ + F  M + D+  D  ++ ++++     ++L     + G    AR     ++ 
Sbjct: 461 GLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNG 520

Query: 403 DQIIS-TSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
             I+S  +++  Y K  C  +AL L+ EM   G+ P  +TF AILSAC H GLV+EG + 
Sbjct: 521 KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRI 580

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           F +M+  Y+I+ + EHY+CMVDL  RAG L +A   +E+MP E +V  W ++L  C  H 
Sbjct: 581 FTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHK 640

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579
           D  +GR  A+R+ ELDP+N   Y+ +S+I+A +G W++   IR +M+ K V K PG SW 
Sbjct: 641 DMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWI 700

Query: 580 D 580
           +
Sbjct: 701 E 701


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  296 bits (758), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 175/566 (30%), Positives = 293/566 (51%), Gaps = 72/566 (12%)

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF-DSVL 142
           KL  ++    L+   P  ++    + +  F  +D+   +  K++ SH+ ++     D+ +
Sbjct: 4   KLKLRQAIDTLYTNGPASHECYTRLALECFRASDV---DQAKRLKSHMHLHLFKPNDTFI 60

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
            + L+NLY K G+ + A ++ + M + D+F  +A++S YA  G + D R +FD      S
Sbjct: 61  HNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDS 120

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V +N++ISG+  N     AL +F +M++ G+     T  SVL+AC+ L  L  GKQ+HG 
Sbjct: 121 VSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGR 180

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT----------- 311
                +  +V V +AL D Y++ G    A +LF  + + + +  N MI+           
Sbjct: 181 IIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKC 240

Query: 312 ------------------------VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
                                    Y   G I++A+ +F  +  K  + W  MIVG +QN
Sbjct: 241 IDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQN 300

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
           G   +AL LF  M   + R D ++++SV+S+CA ++SL  G+ V  +  ++G++ D ++S
Sbjct: 301 GKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVS 360

Query: 408 TSLVDFYCKCGY---------------------------------DALALFNEMRNTGVK 434
           ++LVD YCKCG                                  +AL+L+  M    +K
Sbjct: 361 SALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLK 420

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P  +TF  +LSAC H GLV+EG+++F +M  Q+ ++P  +HY+CMV+LF R+G +++AV+
Sbjct: 421 PDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVD 480

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
           LI  M  E +  +W+++L  CV  GD   G   A  +IEL+P NA  YI LS+++A  G 
Sbjct: 481 LISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGR 540

Query: 555 WEKSSLIRDIMREKHVGKLPGCSWAD 580
           W+  + IR +M+ KHV K    SW +
Sbjct: 541 WKDVASIRSLMKSKHVKKFSAYSWIE 566



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 234/503 (46%), Gaps = 109/503 (21%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
            +HLH  K    N T  I NRLL +Y + G  + A  LFDEM +R+ FSWNAM+  + K 
Sbjct: 47  HMHLHLFKP---NDTF-IHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKS 102

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFA----------------KADLAALEY------ 123
           G  E    +F+ MP ++  S+N +ISGFA                K  L   EY      
Sbjct: 103 GLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVL 162

Query: 124 -----------GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK----- 167
                      GKQIH  I++  L  +  + ++L +LY +CG+ + A ++ + M      
Sbjct: 163 NACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVV 222

Query: 168 ------------------------------EPDDFCLSALISGYANCGKMNDARRVFDRT 197
                                         +PD    S+++  Y   G +++AR+VF   
Sbjct: 223 TWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEI 282

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
            +   V W  MI G   N ++ +ALLLF +M       D  T++SV+S+C+ L  L HG+
Sbjct: 283 REKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQ 342

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
            VHG A  +GV DD++V+SAL+D Y K G+  DA  +FS                     
Sbjct: 343 VVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFS--------------------- 381

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
                     TM  ++++SWNSMI G + NG  +EAL L+ NM + +L+ D  +   V+S
Sbjct: 382 ----------TMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLS 431

Query: 378 ACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVK 434
           AC +   +E G++ F  ++   GL+        +V+ + + G+   A+ L + M     +
Sbjct: 432 ACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQ---E 488

Query: 435 PTIITFTAILSACDHCGLVKEGQ 457
           P  + +T +LS C   G +K G+
Sbjct: 489 PNSLIWTTVLSVCVMKGDIKHGE 511


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  296 bits (758), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 183/606 (30%), Positives = 305/606 (50%), Gaps = 102/606 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  G+++HLH ++ G   S + + N L+ MY++CG+   A L+FD MPRR
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYG-FESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWNAMI G+ +     + L+LF +M +     +  +   +IS  A   L     G++
Sbjct: 260 DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVIS--ACEALGDERLGRE 317

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H +++  G   +  + +SL+ ++   G ++ A  V + M+  D    +A+ISGY   G 
Sbjct: 318 VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNG- 376

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                 + ++  +T ++                        M   GV+ D  T+ASVLSA
Sbjct: 377 ------LPEKAVETYTI------------------------MEHEGVVPDEITIASVLSA 406

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ LG L+ G  +H  A + G+   VIVA++L+D YSK                      
Sbjct: 407 CAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSK---------------------- 444

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    C  I+ A  +F  +PNK++ISW S+I+GL  N    EAL  F  M  L L+
Sbjct: 445 ---------CRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLK 494

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD------ 420
            +  +L SV+SACA I +L  G+++ A     GL  D  +  +L+D Y +CG        
Sbjct: 495 PNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQ 554

Query: 421 --------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                     A+ LF++M  + V P  ITFT++L AC   G+V 
Sbjct: 555 FNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVT 614

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           +G ++F++M+ ++HI P ++HY+ +VDL  RAG L +A   I++MP + D  +W ++L  
Sbjct: 615 DGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNA 674

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  + +  LG   A+ + E+D ++   YI L +++A SG+W++ + +R IMRE  +   P
Sbjct: 675 CRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDP 734

Query: 575 GCSWAD 580
           GCSW +
Sbjct: 735 GCSWVE 740



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 228/497 (45%), Gaps = 74/497 (14%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
           NA++  F++ G   ++  +F  M +++ FSWN+L+ G+AKA     +    ++  +L  G
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKA--GYFDEALNLYHRMLWVG 190

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQV-LNMMK---EPDDFCLSALISGYANCGKMNDAR 191
           +  D      ++   G   D     +V L++++   E D   ++ALI+ Y  CG +  AR
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
            VFDR      + WN+MISGY  N+   E L LF  MR   V  D  T+ SV+SAC +LG
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
               G++VHG+  K G + +V V ++L+  +S  G   +A  +FS+++  D +    MI+
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMIS 370

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
                                          G  +NG P +A++ +  M    +  D+ +
Sbjct: 371 -------------------------------GYEKNGLPEKAVETYTIMEHEGVVPDEIT 399

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY--CKCGYDALALFNEMR 429
           +ASV+SACA +  L+ G  +       GL S  I++ SL+D Y  C+C   AL +F+ + 
Sbjct: 400 IASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459

Query: 430 NTGV------------------------------KPTIITFTAILSACDHCGLVKEGQKW 459
           N  V                              KP  +T  ++LSAC   G +  G++ 
Sbjct: 460 NKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEI 519

Query: 460 F-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
              A++     D  +   + ++D++ R G +  A N       E DV  W+ +L G    
Sbjct: 520 HAHALRTGLGFDGFLP--NALLDMYVRCGRMEPAWNQFNSC--EKDVASWNILLTGYAQQ 575

Query: 519 GDKGLGRKVAERMIELD 535
           G  GL  ++  +MIE D
Sbjct: 576 GKGGLAVELFHKMIESD 592



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 177/432 (40%), Gaps = 105/432 (24%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A   G ++HS++          LG++L++++ + GD   A  V   M E D F  + L+ 
Sbjct: 109 AASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVG 168

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GYA  G        FD                        EAL L+H+M   G+  D  T
Sbjct: 169 GYAKAG-------YFD------------------------EALNLYHRMLWVGIRPDVYT 197

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
              VL  C  L  L  G++VH H  + G   DV V +AL                     
Sbjct: 198 FPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNAL--------------------- 236

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                     IT+Y  CG I  A+ +F  MP +  ISWN+MI G  +N   +E L LF  
Sbjct: 237 ----------ITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFM 286

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-- 417
           M +  +  D  ++ SVISAC  +    LG +V   V   G  ++  ++ SL+  +     
Sbjct: 287 MREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGC 346

Query: 418 ------------------------GYD-------ALALFNEMRNTGVKPTIITFTAILSA 446
                                   GY+       A+  +  M + GV P  IT  ++LSA
Sbjct: 347 WDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSA 406

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHY----SCMVDLFARAGCLNEAVNLIEQMPFE 502
           C   GL+ +G      M  ++     +  Y    + ++D++++  C+++A+ +  ++P  
Sbjct: 407 CAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-N 460

Query: 503 ADVGMWSSILRG 514
            +V  W+SI+ G
Sbjct: 461 KNVISWTSIILG 472



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 125/269 (46%), Gaps = 36/269 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  +L +C    ++  GK++H H L+ G+  +  LP  N LL MY+RCG    A   F+ 
Sbjct: 500 LVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP--NALLDMYVRCGRMEPAWNQFNS 557

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLA--A 120
              ++  SWN ++ G+ + G    +++LF+ M +     ++ ++  L+   +++ +    
Sbjct: 558 C-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDG 616

Query: 121 LEYGKQIHS--HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSAL 177
           LEY + +    HI  N   + SV     V+L G+ G    A + +  M  +PD     AL
Sbjct: 617 LEYFESMEHKFHIAPNLKHYASV-----VDLLGRAGRLEDAYEFIKKMPIDPDPAIWGAL 671

Query: 178 ISG---YANC--GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
           ++    Y N   G++  A+ +F+   DT SV +  ++    +++   + +    K+ R  
Sbjct: 672 LNACRIYQNVELGELA-AQHIFE--MDTKSVGYYILLCNLYADSGKWDEVARVRKIMREN 728

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHG 261
            L       +V   CS   ++E   QVH 
Sbjct: 729 RL-------TVDPGCS---WVEVAGQVHA 747


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  296 bits (758), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 195/702 (27%), Positives = 345/702 (49%), Gaps = 72/702 (10%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           +D+   LLQ C+  H   + +Q+H   +  G   S   +A R++ +Y   G  +DA  +F
Sbjct: 34  LDFFNDLLQQCSKSH---LSQQIHSQIIVTGSHRSAF-LAARVVSVYAGFGLVSDAQRVF 89

Query: 65  DEMPRRNCFS----WNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKA 116
           +  P   CFS    WN+++   +  G+ E++L+++  M +     + F++ ++I   A A
Sbjct: 90  EVSPI-ECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIR--ACA 146

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            + + +  + +H H++  G  ++  +G+ L+ +YGK G  + A +V   M        + 
Sbjct: 147 LMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNT 206

Query: 177 LISGYA---NCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
           ++SGYA   +C   ++  R+      + + V W S++S +    +  E + LF +MR  G
Sbjct: 207 MVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRG 266

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +   A  LA VLS    L   + GK +HG+  K G  + + V ++L+  Y K G  + A 
Sbjct: 267 IGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAAR 326

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF--------RTMPNKSLISWNSMIVGL 344
            LF E+K  + +  N +I+ Y+  G  ++A  IF          M   +++SW+++I G 
Sbjct: 327 ILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGF 386

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
           +  G   EAL+LF  M    ++ +  ++ASV+S CA +++L LG ++   V    +D + 
Sbjct: 387 ASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNI 446

Query: 405 IISTSLVDFYCKCG---------------------------------YDALALFNEMRNT 431
           ++   L++ Y K G                                  +A+  F++M   
Sbjct: 447 LVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKD 506

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
           G +P  +TF A+LSAC H GLV EG++ FD M  ++ ++P++EHY+CMVDL  RAG L E
Sbjct: 507 GFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQE 566

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551
           A  +++ MP E +  +W ++L  C  H +  +  + A ++  L+ E A +Y+ LS+I+A 
Sbjct: 567 ASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAA 626

Query: 552 SGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQ-----HQ 606
           SG WE S+ +R   + K + K PG SW   +    +       Q A  +E+ +       
Sbjct: 627 SGRWEDSAKVRISAKTKGLKKTPGQSWIQ-VKKKVYMFSAGNTQHAELEEVYRILKDLGL 685

Query: 607 SADFCDYIHGFDQARLPLSSKRSFVLGYLLSTLSLKVVYSNL 648
             +   YI   D+       +RS +LGY +   S K   S L
Sbjct: 686 QMEVEGYIPDIDE------EQRSILLGYSMPLPSFKTTSSLL 721


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  296 bits (758), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 179/599 (29%), Positives = 315/599 (52%), Gaps = 68/599 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  +++ G+   A  LF  MP ++  S+  M++  MK G    +++L+   P  +   +
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFF 214

Query: 107 NMLISGFAKADL---AALEYGKQIHSHILVNGL-------------DFDSVLG------- 143
             +ISGF + +L   A   + K +   +  N +             +FD  +G       
Sbjct: 215 TAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274

Query: 144 -----------SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
                      +SL+ LY + GD  +A++V + M+  D    +AL+  YA+ G +  ARR
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARR 334

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           V D     + V W ++I+ +    +  EAL L+ +M  +G   + S  +SVLSAC++L  
Sbjct: 335 VLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQD 394

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L  G ++H +A K+G   ++ V+S+L+D Y K    + A ++F+ L   +T+  N++I+ 
Sbjct: 395 LRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISG 454

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           YS  G++ +A+ +F  MP ++ +SWN+MI G ++N    +AL+ F  M        + +L
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITL 514

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
           +SV+ ACAN+ SLE+G  V A +  +G++ +  + T+L D Y K G              
Sbjct: 515 SSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPE 574

Query: 419 -------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                               ++++LF +M   G+ P   TF AIL AC HCGLV++   +
Sbjct: 575 KNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHY 634

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           F+ M+  + I P+ +HY+CMVD+ ARAGCL EA  L+ ++  E D   WSS+L  C  + 
Sbjct: 635 FETMQ-AHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYR 693

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +K +G + A+++ EL+ +N   Y+ LS+++A+ G+W+ ++  R +M+   + K  GCSW
Sbjct: 694 NKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSW 752



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 201/420 (47%), Gaps = 64/420 (15%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           +K  +   ++ + N L+ +Y+R G+   A  +FD+M  R+  SW A+++ +  LG    +
Sbjct: 273 VKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGA 332

Query: 92  LQLFNVMPQKNDFSWNMLISGFAK---------------------------------ADL 118
            ++ + MP +N+ SW  LI+   +                                 A L
Sbjct: 333 RRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATL 392

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G +IH++ L  G   +  + SSL+++Y KC     A +V N + E +  C ++LI
Sbjct: 393 QDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLI 452

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           SGY+  GKM +A  +F++    +SV WN+MISGY  N    +AL  F+ M  +G +    
Sbjct: 453 SGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEI 512

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL+SVL AC++L  LE G+ VH    K+G+ D++ + +AL D Y+K              
Sbjct: 513 TLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKS------------- 559

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             G ++ ++ +F  MP K+ I+W +M+ GL++NG   E++ LF 
Sbjct: 560 ------------------GDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFE 601

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           +M +  +  ++ +  +++ AC++   +E     F  +   G+       T +VD   + G
Sbjct: 602 DMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAG 661



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 166/398 (41%), Gaps = 100/398 (25%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C T   +  G ++H + LK G  ++ L +++ L+ MY +C   T A  +F
Sbjct: 379 ISCFSSVLSACATLQDLRGGTRIHANALKMGS-STNLFVSSSLIDMYCKCKQCTYAQRVF 437

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------- 115
           + +P +N   WN++I G+   G   ++  LFN MP +N  SWN +ISG+A+         
Sbjct: 438 NSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALN 497

Query: 116 ------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
                                   A+L +LE G+ +H+ I+  G++ +  +G++L ++Y 
Sbjct: 498 YFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYA 557

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           K GD +S+ +V   M E ++                               + W +M+ G
Sbjct: 558 KSGDLDSSRRVFYQMPEKNN-------------------------------ITWTAMVQG 586

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG------KQVHG---- 261
              N    E++ LF  M  NG+  +  T  ++L ACS  G +E         Q HG    
Sbjct: 587 LAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPK 646

Query: 262 ---HACKVGVID-------------------DVIVASALL---DTYSKRGMPSDACKLFS 296
              + C V V+                    D    S+LL    TY  + +   A K   
Sbjct: 647 SKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLH 706

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           EL+  +T     +  +Y+SCG+ +DA      M   SL
Sbjct: 707 ELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASL 744



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 136/329 (41%), Gaps = 45/329 (13%)

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           ++T  ++ S   S G L     +H HA + G+  D  VAS LL  Y+     +D  + F 
Sbjct: 80  SATSTTMPSYAPSSGCLPLVLSLHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFR 139

Query: 297 ELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +    D   +   + M++ +   G I  A+ +F  MP KS++S+ +M+  L + GS  +A
Sbjct: 140 DCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDA 199

Query: 354 LDLF--CNMNKL-------------DLRMDKF----------------SLASVISACANI 382
           ++L+  C ++ +             +L  D F                +L  VI AC   
Sbjct: 200 VELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGA 259

Query: 383 SSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFT 441
              +L   V        L    I +  SL+  Y + G DA A      +  V+  ++++T
Sbjct: 260 GEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMG-DAAAAHRVFDDMEVR-DVVSWT 317

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           A+L      G +   ++  DAM  +  +      +  ++    + G   EA+ L  QM  
Sbjct: 318 ALLDVYADLGDLYGARRVLDAMPARNEVS-----WGTLIARHEQKGDTAEALKLYSQMLA 372

Query: 502 EA---DVGMWSSILRGCVAHGDKGLGRKV 527
           +    ++  +SS+L  C    D   G ++
Sbjct: 373 DGCRPNISCFSSVLSACATLQDLRGGTRI 401


>gi|18481717|gb|AAL73539.1|AF466200_18 hypothetical protein S250_18C08.29 [Sorghum bicolor]
          Length = 679

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 191/635 (30%), Positives = 302/635 (47%), Gaps = 73/635 (11%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L  LL S      I   +QL      + +++ T      LL  Y   GN   A  +FD+
Sbjct: 43  HLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTA-----LLTAYADVGNLASARFVFDD 97

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           MP RN  SWNA++  +++ G    +  LF   P KN  S+  +I+G A+A +  L   + 
Sbjct: 98  MPLRNAASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGM--LREAQA 155

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           ++  +     D   V  ++++  Y + G+   A +V + M   D    SA++ G    G 
Sbjct: 156 VYWEMPPRWRD--PVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGT 213

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +++ARR+F+   + + V W SMI GY+ +    + LLLF  MRR GV  +  TL+ VL  
Sbjct: 214 VSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDG 273

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+    ++ G QVH    ++G  +D+ +  +L+  YS+ G  +DA  LFS +   D +  
Sbjct: 274 CAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSW 333

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-------------------- 346
           N++IT Y     IEDA  +F+ MP K  ISW SM+VG +                     
Sbjct: 334 NSLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVKDEI 393

Query: 347 -----------NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
                      NG+ + A+  FC M++   R +  + + ++SA A+++ L  G Q  A  
Sbjct: 394 AWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYA 453

Query: 396 TIIGLDSDQIISTSLVDFYCKCGY---------------------------------DAL 422
             +G   D  +  SLV  Y KCG                                  DA 
Sbjct: 454 VNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQHGLAEDAF 513

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LFN M+  G +P  +TF  IL+AC   GLV+ G  +F++M+  Y I P  +HY+CMVDL
Sbjct: 514 KLFNRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDL 573

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542
             RAG LNEA+ +   MP +     W ++L     H +  L +  A+R++E+DP +A AY
Sbjct: 574 LGRAGFLNEALEMTNSMPQKDYPDAWKALLSSSSLHSNLDLAKLAAQRLLEIDPYDATAY 633

Query: 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
             LS++F+++G  E   +++         K PG S
Sbjct: 634 TVLSNMFSSAGMKEDEEMVKVAQLSNMASKSPGYS 668



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 178/383 (46%), Gaps = 45/383 (11%)

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           P+   L+AL++ Y   G++ DA+++FDR      + W ++++ Y        A  +F  M
Sbjct: 39  PNRAHLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDM 98

Query: 229 R-RNGV--------------------------LEDASTLASVLSACSSLGFLEHGKQVHG 261
             RN                             ++A +  ++++  +  G L   + V+ 
Sbjct: 99  PLRNAASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYW 158

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
                    D + ++A++  Y + G    A ++F  +   D I  + M+      G + +
Sbjct: 159 EMPP--RWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSE 216

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+ +F  MP ++++SW SMI G  ++G   + L LF +M +  ++++  +L+ V+  CA 
Sbjct: 217 ARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQ 276

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIIT 439
            S ++ G QV   +  +G   D  +  SL+  Y + G   DA +LF+ M     +  I++
Sbjct: 277 ASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMN----QKDIVS 332

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE--HYSCMVDLFARAGCLNEAVNLIE 497
           + ++++      ++++    F  M       PE +   ++ MV  FA  G + E+V L E
Sbjct: 333 WNSLITGYVQNDMIEDAHVLFKLM-------PEKDAISWTSMVVGFANRGWMRESVELFE 385

Query: 498 QMPFEADVGMWSSILRGCVAHGD 520
           QMP + ++  W++++   VA+G+
Sbjct: 386 QMPVKDEIA-WAAVMSSLVANGN 407


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 183/606 (30%), Positives = 305/606 (50%), Gaps = 102/606 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  G+++HLH ++ G   S + + N L+ MY++CG+   A L+FD MPRR
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYG-FESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWNAMI G+ +     + L+LF +M +     +  +   +IS  A   L     G++
Sbjct: 260 DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVIS--ACEALGDERLGRE 317

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H +++  G   +  + +SL+ ++   G ++ A  V + M+  D    +A+ISGY   G 
Sbjct: 318 VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNG- 376

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                 + ++  +T ++                        M   GV+ D  T+ASVLSA
Sbjct: 377 ------LPEKAVETYTI------------------------MEHEGVVPDEITIASVLSA 406

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ LG L+ G  +H  A + G+   VIVA++L+D YSK                      
Sbjct: 407 CAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSK---------------------- 444

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    C  I+ A  +F  +PNK++ISW S+I+GL  N    EAL  F  M  L L+
Sbjct: 445 ---------CRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLK 494

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD------ 420
            +  +L SV+SACA I +L  G+++ A     GL  D  +  +L+D Y +CG        
Sbjct: 495 PNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQ 554

Query: 421 --------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                     A+ LF++M  + V P  ITFT++L AC   G+V 
Sbjct: 555 FNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVT 614

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           +G ++F++M+ ++HI P ++HY+ +VDL  RAG L +A   I++MP + D  +W ++L  
Sbjct: 615 DGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNA 674

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  + +  LG   A+ + E+D ++   YI L +++A SG+W++ + +R IMRE  +   P
Sbjct: 675 CRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDP 734

Query: 575 GCSWAD 580
           GCSW +
Sbjct: 735 GCSWVE 740



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 228/497 (45%), Gaps = 74/497 (14%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
           NA++  F++ G   ++  +F  M +++ FSWN+L+ G+AKA     +    ++  +L  G
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKA--GYFDEALNLYHRMLWVG 190

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQV-LNMMK---EPDDFCLSALISGYANCGKMNDAR 191
           +  D      ++   G   D     +V L++++   E D   ++ALI+ Y  CG +  AR
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
            VFDR      + WN+MISGY  N+   E L LF  MR   V  D  T+ SV+SAC +LG
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
               G++VHG+  K G + +V V ++L+  +S  G   +A  +FS+++  D +    MI+
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMIS 370

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
                                          G  +NG P +A++ +  M    +  D+ +
Sbjct: 371 -------------------------------GYEKNGLPEKAVETYTIMEHEGVVPDEIT 399

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY--CKCGYDALALFNEMR 429
           +ASV+SACA +  L+ G  +       GL S  I++ SL+D Y  C+C   AL +F+ + 
Sbjct: 400 IASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459

Query: 430 NTGV------------------------------KPTIITFTAILSACDHCGLVKEGQKW 459
           N  V                              KP  +T  ++LSAC   G +  G++ 
Sbjct: 460 NKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEI 519

Query: 460 F-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
              A++     D  +   + ++D++ R G +  A N       E DV  W+ +L G    
Sbjct: 520 HAHALRTGLGFDGFLP--NALLDMYVRCGRMEPAWNQFNSC--EKDVASWNILLTGYAQQ 575

Query: 519 GDKGLGRKVAERMIELD 535
           G  GL  ++  +MIE D
Sbjct: 576 GKGGLAVELFHKMIESD 592



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 177/432 (40%), Gaps = 105/432 (24%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A   G ++HS++          LG++L++++ + GD   A  V   M E D F  + L+ 
Sbjct: 109 AASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVG 168

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GYA  G        FD                        EAL L+H+M   G+  D  T
Sbjct: 169 GYAKAG-------YFD------------------------EALNLYHRMLWVGIRPDVYT 197

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
              VL  C  L  L  G++VH H  + G   DV V +AL                     
Sbjct: 198 FPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNAL--------------------- 236

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                     IT+Y  CG I  A+ +F  MP +  ISWN+MI G  +N   +E L LF  
Sbjct: 237 ----------ITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFM 286

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-- 417
           M +  +  D  ++ SVISAC  +    LG +V   V   G  ++  ++ SL+  +     
Sbjct: 287 MREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGC 346

Query: 418 ------------------------GYD-------ALALFNEMRNTGVKPTIITFTAILSA 446
                                   GY+       A+  +  M + GV P  IT  ++LSA
Sbjct: 347 WDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSA 406

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHY----SCMVDLFARAGCLNEAVNLIEQMPFE 502
           C   GL+ +G      M  ++     +  Y    + ++D++++  C+++A+ +  ++P  
Sbjct: 407 CAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-N 460

Query: 503 ADVGMWSSILRG 514
            +V  W+SI+ G
Sbjct: 461 KNVISWTSIILG 472



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 125/269 (46%), Gaps = 36/269 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  +L +C    ++  GK++H H L+ G+  +  LP  N LL MY+RCG    A   F+ 
Sbjct: 500 LVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP--NALLDMYVRCGRMEPAWNQFNS 557

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLA--A 120
              ++  SWN ++ G+ + G    +++LF+ M +     ++ ++  L+   +++ +    
Sbjct: 558 C-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDG 616

Query: 121 LEYGKQIHS--HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSAL 177
           LEY + +    HI  N   + SV     V+L G+ G    A + +  M  +PD     AL
Sbjct: 617 LEYFESMEHKFHIAPNLKHYASV-----VDLLGRAGRLEDAYEFIKKMPIDPDPAIWGAL 671

Query: 178 ISG---YANC--GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
           ++    Y N   G++  A+ +F+   DT SV +  ++    +++   + +    K+ R  
Sbjct: 672 LNACRIYQNVELGELA-AQHIFE--MDTKSVGYYILLCNLYADSGKWDEVARVRKIMREN 728

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHG 261
            L       +V   CS   ++E   QVH 
Sbjct: 729 RL-------TVDPGCS---WVEVAGQVHA 747


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 177/608 (29%), Positives = 303/608 (49%), Gaps = 105/608 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C   +S+ +G+Q+H   +K G +++ L +AN +L MY + G    A  LF  +P +
Sbjct: 431 VLGACINLYSLDLGRQVHCITIKNG-MDADLFVANAMLDMYSKLGAIDVAKALFSLIPVK 489

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-----DLAALEYGK 125
           +  SWNA+I G   L H E+  +  N++ +   +   +    FA A     ++ A+E GK
Sbjct: 490 DSVSWNALIVG---LAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGK 546

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIHS  +   +  +  +GSSL++LY K GD  S+                          
Sbjct: 547 QIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESS-------------------------- 580

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                R+V      +S V  N++I+G + NN + EA+ LF ++ ++G      T  S+LS
Sbjct: 581 -----RKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILS 635

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            C+       GKQVH +  K  +++                               DT L
Sbjct: 636 GCTRPVSSVIGKQVHCYTLKSAILNQ------------------------------DTSL 665

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             +++ +Y  C  +EDA  +   +P+ K+L+ W + I G +QNG  +++L +F  M   D
Sbjct: 666 GISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYD 725

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           +R D+ +  SV+ AC+ +++L  G+++   +   G  S +  +++L+D Y KCG      
Sbjct: 726 VRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSF 785

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF +M+ + +KP  +T   +L AC H 
Sbjct: 786 EIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHA 845

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GL+ EG  +FD+M   Y I P ++HY+C++DL  R G L +A  +I+Q+PF AD  +W++
Sbjct: 846 GLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWAT 905

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
            L  C  H D+  G+  A++++E++P+++  Y+ LSS+ A +G W ++ + R+ MREK V
Sbjct: 906 YLAACQMHKDEERGKVAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAKVAREAMREKGV 965

Query: 571 GKLPGCSW 578
            K PGCSW
Sbjct: 966 MKFPGCSW 973



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 153/613 (24%), Positives = 262/613 (42%), Gaps = 164/613 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C+   ++  G+Q+H   LK G  +S    A  L+ MY +CG   DA  +FD +
Sbjct: 160 IAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAG-LVDMYAKCGEVDDARRMFDGI 218

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
              +   W +MI G+ ++G  +++L LF+ M +                           
Sbjct: 219 ACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDAR 278

Query: 101 --------KNDFSWNMLISGF---------------------------------AKADLA 119
                    +  +WN +I+ +                                 A A++ 
Sbjct: 279 TLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMT 338

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A + G+QIH+  + +GLD +  +GSSL+NLY K G                  C+S    
Sbjct: 339 AFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHG------------------CIS---- 376

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                    DA++VFD +T+ + VMWN+++ G++ N    E + +F  MRR  +  D  T
Sbjct: 377 ---------DAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFT 427

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             SVL AC +L  L+ G+QVH    K G+  D+ VA+A+LD YSK G    A  LFS + 
Sbjct: 428 FVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIP 487

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           V D+                               +SWN++IVGL+ N    EA+++   
Sbjct: 488 VKDS-------------------------------VSWNALIVGLAHNEEEGEAINMLKR 516

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M    + +D+ S A+ I+AC+NI ++E G+Q+ +      + S+  + +SL+D Y K G 
Sbjct: 517 MKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGD 576

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+ LF ++   G KP+  TFT+ILS 
Sbjct: 577 VESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSG 636

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C        G++          ++ +      +V ++ +   L +A  L+E++P   ++ 
Sbjct: 637 CTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLV 696

Query: 507 MWSSILRGCVAHG 519
            W++ + G   +G
Sbjct: 697 EWTATISGYAQNG 709



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 174/393 (44%), Gaps = 69/393 (17%)

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H+ IL  GL     LG +LV+LYG+ G    A + L            A  +G      
Sbjct: 75  LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRAL------------ACCTG------ 116

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLS 245
                         SS   +S++S +  +    + L  F ++R + G   D   +A VLS
Sbjct: 117 -----------APASSAAASSVLSCHARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLS 165

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS LG LEHG+QVH    K G    V   + L+D Y+K                     
Sbjct: 166 ACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAK--------------------- 204

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     CG ++DA+ +F  +     I W SMI G  + G   +AL LF  M K+  
Sbjct: 205 ----------CGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGS 254

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA--LA 423
             D+ +  ++IS  A++  L     +  R+ +    +  +   +++  Y + G D+    
Sbjct: 255 VPDQVTCVTIISTLASMGRLGDARTLLKRIRM----TSTVAWNAVIASYSQSGLDSEVFG 310

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
           L+ +M+  G+ PT  TF +ILSA  +     EG++   A   ++ +D  +   S +++L+
Sbjct: 311 LYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQ-IHATAVKHGLDANVFVGSSLINLY 369

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            + GC+++A  + +    E ++ MW++IL G V
Sbjct: 370 VKHGCISDAKKVFD-FSTEKNIVMWNAILYGFV 401


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 185/608 (30%), Positives = 288/608 (47%), Gaps = 99/608 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++++C     +  G QLH   ++ G  +  + +   L+  Y + GN  +A L+FD++
Sbjct: 154 LASVIRACTQLGVVEKGAQLHGFVVRSG-FDQDVYVGTSLIDFYSKNGNIEEARLVFDQL 212

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             +   +W  +I G+ K G    SL+LF  M + N      ++S    A   L  LE GK
Sbjct: 213 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 272

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+++L  G + D  + + L++ Y KC                                
Sbjct: 273 QIHAYVLRRGTEMDVSVVNVLIDFYTKC-------------------------------N 301

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++   R++FD+    + + W +MISGY+ N+ D EA+ LF +M R G   D     SVL+
Sbjct: 302 RVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT 361

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           +C S   LE G+QVH +  K  +  D  V + L+D Y+K  +  DA K+F  +   + I 
Sbjct: 362 SCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVIS 421

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N MI  YSS  ++                                EAL+LF  M     
Sbjct: 422 YNAMIEGYSSQEKLS-------------------------------EALELFHEMRVRLQ 450

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           + ++F+ A++I+A +N++SL  G+Q   ++  +GLD    ++ +LVD Y KCG       
Sbjct: 451 KPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARK 510

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +AL +F EM   G++P  +TF A+LSAC H G 
Sbjct: 511 MFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGR 570

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V++G   F++M   + I P  EHY+C+V L  R+G L EA   IE+MP E    +W S+L
Sbjct: 571 VEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLL 629

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C   G+  LG+  AE  I  DP+++ +YI LS+IFA+ G W     +RD M    V K
Sbjct: 630 SACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVK 689

Query: 573 LPGCSWAD 580
            PG SW +
Sbjct: 690 EPGRSWIE 697



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 161/590 (27%), Positives = 270/590 (45%), Gaps = 110/590 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LLQ   + + I   K +H   +  G+ + T  +AN L+ +  +     +A ++FD+M
Sbjct: 52  FANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTF-LANILINVCSKSDRVDNARVVFDKM 110

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALE 122
           P +N  +W++M+  + + G+ E++L +F  + +K     N+F    +I   A   L  +E
Sbjct: 111 PHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIR--ACTQLGVVE 168

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G Q+H  ++ +G D D  +G+SL++ Y K G+                           
Sbjct: 169 KGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGN--------------------------- 201

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
               + +AR VFD+ ++ ++V W ++I+GY        +L LF +MR   V+ D   ++S
Sbjct: 202 ----IEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSS 257

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VLSACS L FLE GKQ+H +  + G   DV V + L+D Y+K        KLF ++ V  
Sbjct: 258 VLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV-- 315

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                                        K++ISW +MI G  QN    EA+ LF  MN+
Sbjct: 316 -----------------------------KNIISWTTMISGYMQNSFDWEAMKLFGEMNR 346

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
           L  + D F+  SV+++C +  +LE G QV A      L+SD+ +   L+D Y K      
Sbjct: 347 LGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLID 406

Query: 418 ---------------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                GY       +AL LF+EMR    KP   TF A+++A  +
Sbjct: 407 AKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASN 466

Query: 450 CGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
              ++ GQ++ + + K      P + +   +VD++A+ G + EA  +     +  DV  W
Sbjct: 467 LASLRHGQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARKMFNSSIWR-DVVCW 523

Query: 509 SSILRGCVAHG--DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
           +S++     HG  ++ LG    E M E    N   ++ + S  + +G  E
Sbjct: 524 NSMISTHAQHGEAEEALG-MFREMMKEGIQPNYVTFVAVLSACSHAGRVE 572


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 179/614 (29%), Positives = 298/614 (48%), Gaps = 99/614 (16%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           DT+   +A L+Q+      ++ GKQLH   ++ G L +T  ++N  L +Y +CG     +
Sbjct: 74  DTKT--VAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTF-LSNHFLNLYSKCGELDYTI 130

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
            LFD+M +RN  SW ++I GF      +++L  F  M  + + +    +S   +A   L 
Sbjct: 131 KLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLG 190

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A+++G Q+H  ++  G   +  +GS+L ++Y KC                          
Sbjct: 191 AIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKC-------------------------- 224

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                G+++DA + F+      +V+W SMI G++ N +  +AL  + KM  + V  D   
Sbjct: 225 -----GELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHV 279

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L S LSACS+L     GK +H    K+G   +  + +AL D YSK G             
Sbjct: 280 LCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSG------------- 326

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             D +  + +  ++S C                S++S  ++I G  +     +AL  F +
Sbjct: 327 --DMVSASNVFQIHSDC---------------ISIVSLTAIIDGYVEMDQIEKALSTFVD 369

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           + +  +  ++F+  S+I ACAN + LE G Q+  +V       D  +S++LVD Y KCG 
Sbjct: 370 LRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGL 429

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+  FN M + G+KP  +TF  +L  
Sbjct: 430 FDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKG 489

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H G+V++G  +F +M+  Y + P+ EHYSC++DL  RAG L EA + I  MPFE +V 
Sbjct: 490 CSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVF 549

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            W S L  C  HGD    +  A+++++L+PEN+ A++ LS+I+A   +WE    +R +++
Sbjct: 550 GWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIK 609

Query: 567 EKHVGKLPGCSWAD 580
           + ++ KLPG SW D
Sbjct: 610 DGNMNKLPGYSWVD 623


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 195/651 (29%), Positives = 316/651 (48%), Gaps = 110/651 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C    ++  G++ H   +K G L++   + N LL MY +CG+  DA+ LF  M
Sbjct: 144 LASVLSACGGLAALGDGRRCHGVAVKVG-LDANQFVENALLGMYTKCGSVGDAVRLFYGM 202

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA---DLA- 119
            R N  S+ AM+ G  + G  + +L+LF  M +     +  S + ++   A+A   D + 
Sbjct: 203 ARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSV 262

Query: 120 --ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC------------------------ 153
             A   G+ IH+ ++  G   D  +G+SL+++Y KC                        
Sbjct: 263 ARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNIL 322

Query: 154 -------GDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
                  G    A +VL++M+E    P++   S L++       ++ AR +FD+ +  S 
Sbjct: 323 ITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSV 382

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
             WN+++SGY    +  + + LF +M+   V  D +TLA +LS+CS LG L+ G+QVH  
Sbjct: 383 TTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSA 442

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           + +  + +D+ VAS L+D YSK                               CG+I  A
Sbjct: 443 SVRFLLHNDMFVASGLVDMYSK-------------------------------CGQIGIA 471

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
           + IF  M  + ++ WNS+I GL+ +    EA D F  M +  +   + S AS+I++C+ +
Sbjct: 472 RSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 531

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD-------------- 420
           SS+  G Q+ A+V   G D +  + ++L+D Y KCG        +D              
Sbjct: 532 SSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMI 591

Query: 421 -----------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                      A+ LF  M  T  KP  +TF A+L+ C H GLV +   +F++M+  Y I
Sbjct: 592 HGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGI 651

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P  EHY+C++D   RAG   E   LI +MP + D  +W  +L  CV H +  LG+  AE
Sbjct: 652 IPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAE 711

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +  +DP+N   Y+ LS+I+A+ G    +S +R +M  + V K  G SW D
Sbjct: 712 HLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWID 762



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 138/569 (24%), Positives = 249/569 (43%), Gaps = 90/569 (15%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +ANRL+++Y R G P  ALL F  +P  N +S+NA +    + G  + +  L   MP++N
Sbjct: 45  LANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPRRN 104

Query: 103 DFSWNMLISGFAKADLAALE----YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
             SWN +IS  A++     E    YG+     +L       SVL  S        GD   
Sbjct: 105 AVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVL--SACGGLAALGDGRR 162

Query: 159 ANQV-LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
            + V + +  + + F  +AL+  Y  CG + DA R+F      + V + +M+ G      
Sbjct: 163 CHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGS 222

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH--------GKQVHGHACKVGVI 269
             +AL LF +M R+GV  D  +++SVL AC+     ++        G+ +H    + G  
Sbjct: 223 IDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFG 282

Query: 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY---SSCGR-------- 318
            D  V ++L+D Y+K     +A K+F  L     +  N +IT +    SC +        
Sbjct: 283 SDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLM 342

Query: 319 ------------------------IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                   +  A+ +F  +   S+ +WN+++ G  Q     + +
Sbjct: 343 QEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTI 402

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +LF  M   +++ D+ +LA ++S+C+ +  L+ G QV +      L +D  +++ LVD Y
Sbjct: 403 ELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMY 462

Query: 415 CKCGY---------------------------------DALALFNEMRNTGVKPTIITFT 441
            KCG                                  +A   F +MR  G+ PT  ++ 
Sbjct: 463 SKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYA 522

Query: 442 AILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           +++++C     +  G++     MK  Y  D  +   S ++D++A+ G +++A    + M 
Sbjct: 523 SMINSCSRLSSIPHGRQIHAQVMKDGY--DQNVYVGSALIDMYAKCGNMDDARLFFDTMM 580

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            + ++  W+ ++ G   +   GLG K  E
Sbjct: 581 MK-NIVAWNEMIHG---YAQNGLGDKAVE 605



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 186/434 (42%), Gaps = 81/434 (18%)

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D+ L + LV LY + G    A      +  P+D+  +A +S     G ++ AR +     
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 199 DTSSVMWNSMISGYI-SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
             ++V WN++IS    S  +  EA+ ++ +MR  G+L    TLASVLSAC  L  L  G+
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR 161

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           + HG A KVG+  +  V +ALL  Y+K                               CG
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTK-------------------------------CG 190

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            + DA  +F  M   + +S+ +M+ GL+Q GS  +AL LF  M +  + +D  S++SV+ 
Sbjct: 191 SVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLG 250

Query: 378 ACAN--------ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------ 417
           ACA           +  LG+ + A V   G  SDQ +  SL+D Y KC            
Sbjct: 251 ACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFES 310

Query: 418 --------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                         G+        A+ + + M+  G +P  +T++ +L++C     V   
Sbjct: 311 LPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSA 370

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILR 513
           +  FD +       P +  ++ ++  + +     + + L  +M     + D    + IL 
Sbjct: 371 RAMFDKIS-----RPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 425

Query: 514 GCVAHGDKGLGRKV 527
            C   G    GR+V
Sbjct: 426 SCSKLGILDFGRQV 439



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M T   Y A ++ SC+   SI  G+Q+H   +K G  +  + + + L+ MY +CGN  DA
Sbjct: 515 MPTESSY-ASMINSCSRLSSIPHGRQIHAQVMKDG-YDQNVYVGSALIDMYAKCGNMDDA 572

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND 103
            L FD M  +N  +WN MI G+ + G  +K+++LF  M    QK D
Sbjct: 573 RLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPD 618


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  295 bits (756), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 178/604 (29%), Positives = 300/604 (49%), Gaps = 98/604 (16%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C    +I  G+ LH   +K G+++S   +++ L+ MYM+ G       +F++M  RN
Sbjct: 131 LKACALGVNICFGELLHGFSVKSGLIHSVF-VSSALIDMYMKVGKIEQGCRVFEKMMTRN 189

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF--SWNMLISGFAKADLAALEYGKQIHS 129
             SW A+I G +  G+  + L  F+ M +      S    I+  A AD + L +GK IH+
Sbjct: 190 VVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHT 249

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
             +  G D  S + ++L  +Y KCG  +   ++   M+ PD    + LIS Y   G    
Sbjct: 250 QTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMG---- 305

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
                                      E+  A+  F +MR++ V  +  T A+V+S+C++
Sbjct: 306 ---------------------------EEEHAVEAFKRMRKSYVSPNKYTFAAVISSCAN 338

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L   + G+Q+HGH  ++G+++ + VA++++  YSK G+   A  +F  +   D I  +T+
Sbjct: 339 LAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTI 398

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           I+VY                               SQ G   EA D    M +   + ++
Sbjct: 399 ISVY-------------------------------SQGGYAKEAFDYLSWMRREGPKPNE 427

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
           F+L+SV+S C +++ LE G+QV A +  IG+D + ++ ++++  Y KCG           
Sbjct: 428 FALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNG 487

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +A+ LF ++ + G+KP  + F  +L+AC+H G+V  G
Sbjct: 488 MKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLG 547

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             +F  M   Y I P  EHY C++DL  RAG L+EA ++I  MPF  D  +WS++LR C 
Sbjct: 548 FYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACR 607

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            HGD   GR  AE++++LDP +A  +I L++I+A  G W++++ IR +M+ K V K  G 
Sbjct: 608 VHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGW 667

Query: 577 SWAD 580
           SW +
Sbjct: 668 SWVN 671



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/515 (24%), Positives = 216/515 (41%), Gaps = 108/515 (20%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----P 99
           N  L+  ++ G    A  +FD+M  R+  SW  +I G++      ++L LF+ M     P
Sbjct: 61  NSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGP 120

Query: 100 QKNDFSWNMLISGFAKADLAALE--YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
           Q++ F    +IS   KA    +   +G+ +H   + +GL     + S+L+++Y K G   
Sbjct: 121 QRDQF----MISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVG--- 173

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
                                       K+    RVF++    + V W ++I+G +    
Sbjct: 174 ----------------------------KIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGY 205

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
           + E LL F +M R+ V  D+ T A  L A +    L HGK +H    K G  +   V + 
Sbjct: 206 NMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINT 265

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           L   Y+K G P    +LF ++++ D +   T+I+ Y   G  E A   F+ M  KS +S 
Sbjct: 266 LATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRM-RKSYVSP 324

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N                              K++ A+VIS+CAN+++ + GEQ+   V  
Sbjct: 325 N------------------------------KYTFAAVISSCANLAAAKWGEQIHGHVLR 354

Query: 398 IGLDSDQIISTSLVDFYCKCGY---------------------------------DALAL 424
           +GL +   ++ S++  Y KCG                                  +A   
Sbjct: 355 LGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDY 414

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
            + MR  G KP     +++LS C    L+++G++   A      ID E   +S ++ +++
Sbjct: 415 LSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQ-VHAHLLCIGIDHEAMVHSAIISMYS 473

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           + G + EA  +   M    D+  W++++ G   HG
Sbjct: 474 KCGSVQEASKIFNGMKIN-DIISWTAMINGYAEHG 507



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 157/339 (46%), Gaps = 69/339 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++ SC    +   G+Q+H H L+ G++N+ L +AN ++ +Y +CG    A L+F  +
Sbjct: 329 FAAVISSCANLAAAKWGEQIHGHVLRLGLVNA-LSVANSIITLYSKCGLLKSASLVFHGI 387

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
            R++  SW+ +I  + + G+ +++    + M    P+ N+F+ + ++S      +A LE 
Sbjct: 388 TRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLS--VCGSMALLEQ 445

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H+H+L  G+D ++++ S+++++Y KCG    A+++ N MK  D    +A+I+GYA 
Sbjct: 446 GKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAE 505

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G                                  EA+ LF K+   G+  D      V
Sbjct: 506 HGY-------------------------------SQEAINLFEKISSVGLKPDYVMFIGV 534

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L+AC+  G ++ G                     +L T   R  PS              
Sbjct: 535 LTACNHAGMVDLG-----------------FYYFMLMTNVYRISPSKEH----------- 566

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMI 341
                +I +    GR+ +A+HI R+MP +   + W++++
Sbjct: 567 --YGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLL 603



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           V++ + LN+ +      G++  A+++F  M ++  ISW ++I G        EAL LF N
Sbjct: 54  VHNMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSN 113

Query: 360 M-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           M      + D+F ++  + ACA   ++  GE +       GL     +S++L+D Y K G
Sbjct: 114 MWVHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVG 173

Query: 419 Y--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                  +F +M    V    +++TAI++   H G   EG  +F  M
Sbjct: 174 KIEQGCRVFEKMMTRNV----VSWTAIIAGLVHAGYNMEGLLYFSEM 216


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  295 bits (756), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 196/677 (28%), Positives = 323/677 (47%), Gaps = 141/677 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+    +++G+++H   +  G   S   +AN L+ MY +CG   D+  LF  +  R
Sbjct: 88  VLKACSMKRDLNMGRKVHGMAVVTG-FESDGFVANTLVVMYAKCGLLDDSRRLFGGIVER 146

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           N  SWNA+   +++     +++ LF  M +     N+FS +++++  A A L   + G++
Sbjct: 147 NVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILN--ACAGLQEGDLGRK 204

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  +L  GLD D                                F  +AL+  Y+  G+
Sbjct: 205 IHGLMLKMGLDLDQ-------------------------------FSANALVDMYSKAGE 233

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  A  VF        V WN++I+G + ++ +  AL+L  +M+ +G   +  TL+S L A
Sbjct: 234 IEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKA 293

Query: 247 CSSLGFLEHGKQVHGHACK----------VGVID---------------------DVIVA 275
           C+++GF E G+Q+H    K          VG++D                     D+I  
Sbjct: 294 CAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAW 353

Query: 276 SALLDTYSKRGMPSDACKLFSEL------------------------------------- 298
           +AL+  YS+ G   DA  LFS++                                     
Sbjct: 354 NALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIK 413

Query: 299 -KVY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
             +Y D  ++N+++  Y  C  I++A  IF     + L+++ SMI   SQ G   EAL L
Sbjct: 414 SGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKL 473

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           +  M   D++ D F  +S+++ACAN+S+ E G+Q+       G   D   S SLV+ Y K
Sbjct: 474 YLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAK 533

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                  +AL LFN+M   GV P  IT  ++
Sbjct: 534 CGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSV 593

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L AC+H GLV EG+++F+ M+  + I P  EHY+CM+DL  R+G LNEAV L+  +PFEA
Sbjct: 594 LCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEA 653

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           D  +W ++L     H +  LG+K A+ + +L+PE +  ++ L++I+A++G WE  + +R 
Sbjct: 654 DGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRK 713

Query: 564 IMREKHVGKLPGCSWAD 580
            M++  V K PG SW +
Sbjct: 714 FMKDSKVKKEPGMSWIE 730



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 229/486 (47%), Gaps = 75/486 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L++C       +G+QLH   +K    +S L  A  L+ MY +C    DA   +D M
Sbjct: 287 LSSALKACAAMGFKELGRQLHSSLIKMDA-HSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-ADLAALEYGK 125
           P+++  +WNA+I G+ + G    ++ LF+ M  ++ DF+   L +     A L A++  K
Sbjct: 346 PKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCK 405

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+  + +G+  D  + +SL++ YGKC   + A+                         
Sbjct: 406 QIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEAS------------------------- 440

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                 ++F+  T    V + SMI+ Y    +  EAL L+ +M+   +  D    +S+L+
Sbjct: 441 ------KIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLN 494

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC++L   E GKQ+H HA K G + D+  +++L++ Y+K G   DA + FSE+       
Sbjct: 495 ACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEI------- 547

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                   PN+ ++SW++MI G +Q+G   EAL LF  M +  +
Sbjct: 548 ------------------------PNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGV 583

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGY--DAL 422
             +  +L SV+ AC +   +  G+Q F ++ ++ G+   Q     ++D   + G   +A+
Sbjct: 584 PPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAV 643

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVD 481
            L N +     +     + A+L A      ++ GQK   A K  + ++PE    +  + +
Sbjct: 644 ELVNSIP---FEADGFVWGALLGAARIHKNIELGQK---AAKMLFDLEPEKSGTHVLLAN 697

Query: 482 LFARAG 487
           ++A AG
Sbjct: 698 IYASAG 703



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 200/433 (46%), Gaps = 77/433 (17%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           +LH H +K G  +    + N L+ +Y +C     A  L DE    +  SW++++ G+++ 
Sbjct: 2   ELHAHLIKFG-FSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 86  GHKEKSLQLFNVM----PQKNDFSWNMLISGFA-KADLAALEYGKQIHSHILVNGLDFDS 140
           G  E++L +FN M     + N+F++  ++   + K DL     G+++H   +V G     
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDL---NMGRKVHGMAVVTGF---- 113

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
                                      E D F  + L+  YA CG ++D+RR+F    + 
Sbjct: 114 ---------------------------ESDGFVANTLVVMYAKCGLLDDSRRLFGGIVER 146

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           + V WN++ S Y+ +    EA+ LF +M R+G++ +  +++ +L+AC+ L   + G+++H
Sbjct: 147 NVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIH 206

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G   K+G+  D   A+AL+D YSK                                G IE
Sbjct: 207 GLMLKMGLDLDQFSANALVDMYSK-------------------------------AGEIE 235

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            A  +F+ + +  ++SWN++I G   +     AL L   M     R + F+L+S + ACA
Sbjct: 236 GAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACA 295

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTII 438
            +   ELG Q+ + +  +   SD   +  LVD Y KC    DA   ++ M     K  II
Sbjct: 296 AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP----KKDII 351

Query: 439 TFTAILSACDHCG 451
            + A++S    CG
Sbjct: 352 AWNALISGYSQCG 364



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 194/429 (45%), Gaps = 99/429 (23%)

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           ++H+H++  G   D  L + LV LY KC  F                       GYA   
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRF-----------------------GYA--- 35

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                R++ D +++   V W+S++SGY+ N    EALL+F++M   GV  +  T  SVL 
Sbjct: 36  -----RKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLK 90

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS    L  G++VHG A   G   D  VA+ L+  Y+K G+                  
Sbjct: 91  ACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGL------------------ 132

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                        ++D++ +F  +  ++++SWN++     Q+    EA+ LF  M +  +
Sbjct: 133 -------------LDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             ++FS++ +++ACA +   +LG ++   +  +GLD DQ  + +LVD Y K G       
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 419 ----------------------YD----ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                 +D    AL L +EM+ +G +P + T ++ L AC   G 
Sbjct: 240 VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299

Query: 453 VKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            + G++   ++ K   H D  +     +VD++++   +++A    + MP + D+  W+++
Sbjct: 300 KELGRQLHSSLIKMDAHSD--LFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNAL 356

Query: 512 LRGCVAHGD 520
           + G    GD
Sbjct: 357 ISGYSQCGD 365


>gi|302782465|ref|XP_002973006.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
 gi|300159607|gb|EFJ26227.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
          Length = 698

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 186/572 (32%), Positives = 295/572 (51%), Gaps = 47/572 (8%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP------QKND 103
           MY  CG   DA  +FD MP RN FSW  +I  ++  G ++++L L+  +       Q + 
Sbjct: 1   MYRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADA 60

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
           F ++ +++  A+  L  LE G +IH  I+  G+  D  L ++LV +Y KCG  + A QV 
Sbjct: 61  FIFSSVLAACAR--LKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVF 118

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
           + +   D    +A++S  A  G +  A +++        + W++MIS       D EAL 
Sbjct: 119 DRITHRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALE 178

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           L+ +M  + V  +ASTLA+VL+AC+ LG L  G  V   A + G+  D +V + L++ Y+
Sbjct: 179 LYREMILS-VRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYA 237

Query: 284 KRGMPSDACK-LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
           + G    A + LF  +K    +  N M+T ++   R+++A+ +FR MP+KS+ISWN+MI 
Sbjct: 238 RFGDVIAAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIA 297

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV----------- 391
           G  QNG P +AL+LF  M+   L+  + +  SV+ ACAN+++  LG  +           
Sbjct: 298 GFGQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSLGRFICDGMDEALAKD 357

Query: 392 ------------------FARVTIIGLDSDQIIS-TSLVDFYCKCGY--DALALFNEMRN 430
                              AR T + +    ++S T+++  Y + GY  +AL +F  M  
Sbjct: 358 ISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEALDIFRIMVQ 417

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW--QYHIDPEIEHYSCMVDLFARAGC 488
            GV+P  IT    LSAC H  L  EG   F ++     Y +     H+ C +DL  RAG 
Sbjct: 418 AGVEPNGITLINTLSACSHGALFDEGSDIFSSLVSGDYYGVTANESHFLCAIDLLGRAGY 477

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP---ENACAYIQL 545
           L +A  LI +MPF+A    W+S+L  C    D     +VA  + ELD    ++   Y+ L
Sbjct: 478 LKDAETLITKMPFKAGAVAWTSLLSACRTFRDLKRAGRVANHLFELDESSIKDPAPYVML 537

Query: 546 SSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           S+I+A++G+      +RD +R K   KLPG S
Sbjct: 538 SNIYASAGDRAAEMKLRDQIRIKCRKKLPGKS 569



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 217/475 (45%), Gaps = 74/475 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     +  G ++H   +K+G+    + + N L+ MY +CG    A  +FD +  R
Sbjct: 66  VLAACARLKCLEQGLEIHERIVKRGV-KQDVGLQNALVTMYAKCGRIDRAKQVFDRITHR 124

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEY----- 123
           +  SWNAM+    + GH E +L+++  M   +   W+ +IS  A A  D  ALE      
Sbjct: 125 DVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYREMI 184

Query: 124 -------------------------GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
                                    G  +    + +GLD D+V+G++LVNLY + GD  +
Sbjct: 185 LSVRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFGDVIA 244

Query: 159 ANQVL-NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
           A +VL + MK+      +A+++ +A   ++++A ++F    D S + WN+MI+G+  N  
Sbjct: 245 AREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFGQNGR 304

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
             +AL LF +M   G+     T  SVL AC++L     G+ +                  
Sbjct: 305 PKQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSLGRFI------------------ 346

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
                         C    E    D  + N++  +Y  CG  E A+  F  M  + ++SW
Sbjct: 347 --------------CDGMDEALAKDISVANSICNMYGKCGLPELARQTFLEMTYRDVVSW 392

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT- 396
            ++I   SQNG   EALD+F  M +  +  +  +L + +SAC++ +  + G  +F+ +  
Sbjct: 393 TAIIAAYSQNGYSSEALDIFRIMVQAGVEPNGITLINTLSACSHGALFDEGSDIFSSLVS 452

Query: 397 --IIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSAC 447
               G+ +++      +D   + GY  DA  L  +M     K   + +T++LSAC
Sbjct: 453 GDYYGVTANESHFLCAIDLLGRAGYLKDAETLITKM---PFKAGAVAWTSLLSAC 504


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  295 bits (755), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 180/621 (28%), Positives = 304/621 (48%), Gaps = 92/621 (14%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           L   N+ +   +R G   +A  LFD MP+RN  +WN+MI G+++     K+ +LF+ MP 
Sbjct: 67  LYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPD 126

Query: 101 KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
           ++  SWN++ISG+       +E G+    H+     + D V  +++++ Y + G  + A 
Sbjct: 127 RDVVSWNLMISGYVSCQGRWVEEGR----HLFDEMPERDCVSWNTMISGYTRSGRMDEAL 182

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           Q+ + M+E +    +A+++G+   G +  A   F R  +  S   +++++G I N E  E
Sbjct: 183 QLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDE 242

Query: 221 ALLLFHKMRR---------------------NGVLEDASTLASVLSACSSLGFLEHGKQV 259
           A  +    RR                     NG ++ A  L         + F + G++ 
Sbjct: 243 AKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQL------FDQIPFYDGGQKD 296

Query: 260 HGH------------ACKVGVID--------------DVIVASALLDTYSKRGMPSDACK 293
            G              C V   D              D I  + ++  Y +     +A  
Sbjct: 297 GGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWM 356

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF E+   DT+  N+MI+ ++  G +E A+ +F T+P K+L+SWNSMI G   NG    A
Sbjct: 357 LFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGA 416

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
            +L+  M     + D+ +L+SV+S C+  ++L LG Q+  ++T   +  D  I+ SL+  
Sbjct: 417 TELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITM 475

Query: 414 YCKCGY----------------------------------DALALFNEMRNTGVKPTIIT 439
           Y +CG                                   DAL LF  M+   V+PT IT
Sbjct: 476 YSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYIT 535

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           F ++L+AC H G VKEG+  F +M  ++ I+P IEH++ +VD+  R G L EA++LI  M
Sbjct: 536 FISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSM 595

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           PFE D  +W ++L  C  H +  L R  AE +++L+PE++  Y+ L +++A  G+W+ ++
Sbjct: 596 PFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNAT 655

Query: 560 LIRDIMREKHVGKLPGCSWAD 580
            +R +M   ++ K PG SW D
Sbjct: 656 EMRMMMERNNIRKQPGYSWVD 676



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 7/178 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L  C+   ++H+G Q+H    K  I +  +PI N L+ MY RCG   +A  +FDE+
Sbjct: 435 LSSVLSVCSGFAALHLGMQIHQQITKTVIPD--IPINNSLITMYSRCGAIVEARTIFDEV 492

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGK 125
             ++   SWNAMI G+   G    +L+LF +M + K   ++   IS       A      
Sbjct: 493 KLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEG 552

Query: 126 QIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
           ++H   +      +  +   +SLV++ G+ G    A  ++N M  EPD     AL+  
Sbjct: 553 RMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGA 610


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 199/680 (29%), Positives = 327/680 (48%), Gaps = 141/680 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +        +G+QLH   +K G  + T  + N L+ +Y R      A  +F  M
Sbjct: 264 LSSVLSASTKIQLFELGEQLHCLVIKWGFHSETY-VCNGLVALYSRSRKLISAERIFSTM 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KND-FSWNMLISGFAKADLAALEY 123
             R+  S+N++I G ++ G  +++L+LF  M +   K D  +   L+S  A A + AL  
Sbjct: 323 NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLS--ACASVGALHK 380

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+HSH +  G+  D +L  SL++LY KC D  +                         
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVET------------------------- 415

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                 A + F  T   + V+WN M+  Y   +  +++  +F +M+  G++ +  T  S+
Sbjct: 416 ------AHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSI 469

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG----------------- 286
           L  C+SLG L  G+Q+H H  K G   +V V S L+D Y+K G                 
Sbjct: 470 LRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV 529

Query: 287 --------------MPSDACKLFSELKV----YDTI------------------------ 304
                         M S+A +LF E++     +D I                        
Sbjct: 530 VSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ 589

Query: 305 -----------LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                      + N +I++Y+ CGRI++A   F  + +K+ ISWNS++ GL+Q+G   EA
Sbjct: 590 SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L +F  M + +  ++ F+  S ISA A++++++ G+Q+ + V   G DS++ +S SL+  
Sbjct: 650 LQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISL 709

Query: 414 YCK---------------------------------CGYDALALFNEMRNTGVKPTIITF 440
           Y K                                 CG +AL LF EM+  G+ P  +TF
Sbjct: 710 YAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTF 769

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H GLVKEG  +F++M   + + P+ EHY C+VDL  RAG L+ A+  I++MP
Sbjct: 770 VGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMP 829

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
             AD  +W ++L  CV H +  +G + A  ++EL+PE++  Y+ +S+I+A S +W     
Sbjct: 830 IPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDW 889

Query: 561 IRDIMREKHVGKLPGCSWAD 580
            R +M+++ V K PG SW +
Sbjct: 890 SRKLMKDRGVKKEPGRSWIE 909



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 148/546 (27%), Positives = 239/546 (43%), Gaps = 105/546 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C T  S+    +LH    K G     L I + L+  Y R G+   A+ +FDE   R
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLI-DSLVDNYFRHGDQHGAVKVFDENSNR 122

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           + FSWN MI  F+      +   LF  M  +    N +++  ++      D+A   Y KQ
Sbjct: 123 SVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIA-FNYVKQ 181

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +HS     G D   ++ + L++LY K G   SA +V                    NC  
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVF-------------------NCIC 222

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           M D             V W +MISG   N  + EA+LLF  M  + +      L+SVLSA
Sbjct: 223 MKDI------------VTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSA 270

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            + +   E G+Q+H    K G   +  V + L+  YS+      + KL S          
Sbjct: 271 STKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSR------SRKLIS---------- 314

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                          A+ IF TM ++  +S+NS+I GL Q G    AL+LF  M +  L+
Sbjct: 315 ---------------AERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLK 359

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  ++AS++SACA++ +L  G Q+ +     G+ +D I+  SL+D Y KC         
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     D+  +F +M+  G+ P   T+ +IL  C   G +
Sbjct: 420 FLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 454 KEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
             G++     +K  + ++  +   S ++D++A+ G L  A+ ++ ++P E DV  W++++
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYV--CSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMI 536

Query: 513 RGCVAH 518
            G V H
Sbjct: 537 AGYVQH 542



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 232/548 (42%), Gaps = 100/548 (18%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ+H      G  +S L +AN L+ +Y + G    A  +F+ +  ++  +W AMI G  +
Sbjct: 180 KQVHSRTFYYGFDSSPL-VANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQ 238

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIHSHILVNGLDFDSVL 142
            G +E+++ LF  M     F    ++S    A   +   E G+Q+H  ++  G       
Sbjct: 239 NGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG------- 291

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
                        F+S   V N            L++ Y+   K+  A R+F        
Sbjct: 292 -------------FHSETYVCN-----------GLVALYSRSRKLISAERIFSTMNSRDG 327

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V +NS+ISG +       AL LF KM+R+ +  D  T+AS+LSAC+S+G L  G Q+H H
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSH 387

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           A K G+  D+I+  +LLD YSK      A K F   +  + +L N M+  Y     + D+
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDS 447

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             IFR M  + +I                                ++F+  S++  C ++
Sbjct: 448 FEIFRQMQMEGMIP-------------------------------NQFTYPSILRTCTSL 476

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------------- 419
            +L LGEQ+   V   G   +  + + L+D Y K G                        
Sbjct: 477 GALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMI 536

Query: 420 ----------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                     +AL LF EM   G++   I F + +SAC     +++GQ+   A  +    
Sbjct: 537 AGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ-IHAQSYAAGF 595

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
             ++   + ++ L+AR G + EA    E++  + ++  W+S++ G    G      +V  
Sbjct: 596 GADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQVFV 654

Query: 530 RMIELDPE 537
           RM+  + E
Sbjct: 655 RMLRTEAE 662



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 178/434 (41%), Gaps = 102/434 (23%)

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           EP    + +L+  Y   G  + A +VFD  ++ S   WN MI  +++   + +   LF +
Sbjct: 92  EP--LLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRR 149

Query: 228 MRRNGVLEDASTLASVLSAC--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           M   G+  +  T A VL AC    + F  + KQVH      G     +VA+ L+D YSK 
Sbjct: 150 MLAEGITPNGYTFAGVLKACVGGDIAF-NYVKQVHSRTFYYGFDSSPLVANLLIDLYSKN 208

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           G                                IE AK +F  +  K +++W +MI GLS
Sbjct: 209 GY-------------------------------IESAKKVFNCICMKDIVTWVAMISGLS 237

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           QNG   EA+ LFC+M+  ++    + L+SV+SA   I   ELGEQ+   V   G  S+  
Sbjct: 238 QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 406 ISTSLVDFYCKC-------------------------------GYD--ALALFNEMRNTG 432
           +   LV  Y +                                G+   AL LF +M+   
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFD-AMK--------------------------W 465
           +KP  IT  ++LSAC   G + +G +    A+K                           
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 466 QYHIDPEIEH---YSCMVDLFARAGCLNEAVNLIEQMPFEADVG---MWSSILRGCVAHG 519
           ++ +  E E+   ++ M+  + +   L+++  +  QM  E  +     + SILR C + G
Sbjct: 418 KFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 520 DKGLGRKVAERMIE 533
              LG ++   +I+
Sbjct: 478 ALYLGEQIHTHVIK 491



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 127/338 (37%), Gaps = 73/338 (21%)

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
           ++ + L + M   GV  +      +L  C + G L    ++H    K G   + ++  +L
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +D Y + G    A K+F E                                 N+S+ SWN
Sbjct: 100 VDNYFRHGDQHGAVKVFDE-------------------------------NSNRSVFSWN 128

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS-SLELGEQVFARVTI 397
            MI       S  +   LF  M    +  + ++ A V+ AC     +    +QV +R   
Sbjct: 129 KMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFY 188

Query: 398 IGLDSDQIISTSLVDFYCKCGY---------------------------------DALAL 424
            G DS  +++  L+D Y K GY                                 +A+ L
Sbjct: 189 YGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILL 248

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSC--MVD 481
           F +M  + + PT    +++LSA     L + G++     +KW +H     E Y C  +V 
Sbjct: 249 FCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH----SETYVCNGLVA 304

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           L++R+  L  A  +   M     V  ++S++ G V  G
Sbjct: 305 LYSRSRKLISAERIFSTMNSRDGVS-YNSLISGLVQQG 341


>gi|242080473|ref|XP_002445005.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
 gi|241941355|gb|EES14500.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
          Length = 679

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 191/635 (30%), Positives = 301/635 (47%), Gaps = 73/635 (11%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L  LL S      I   +QL      + +++ T      LL  Y   GN   A  +FD+
Sbjct: 43  HLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTA-----LLTAYADVGNLASARFVFDD 97

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           MP RN  SWNA++  +++ G    +  LF   P KN  S+  +I+G A+A +  L   + 
Sbjct: 98  MPLRNAASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGM--LREAQA 155

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           ++  +     D   V  ++++  Y + G+   A +V + M   D    SA++ G    G 
Sbjct: 156 VYWEMPPRWRD--PVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGT 213

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +++ARR+F+   + + V W SMI GY+ +    + LLLF  MRR GV  +  TL+ VL  
Sbjct: 214 VSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDG 273

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+    ++ G QVH    ++G  +D+ +  +L+  YS+ G  +DA  LFS +   D +  
Sbjct: 274 CAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSW 333

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-------------------- 346
           N++IT Y     IEDA  +F+ MP K  ISW SM+VG +                     
Sbjct: 334 NSLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVKDEI 393

Query: 347 -----------NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
                      NG+ + A+  FC M++   R +  + + ++SA A+++ L  G Q  A  
Sbjct: 394 AWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYA 453

Query: 396 TIIGLDSDQIISTSLVDFYCKCGY---------------------------------DAL 422
             +G   D  +  SLV  Y KCG                                  DA 
Sbjct: 454 VNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQHGLAEDAF 513

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LFN M+  G +P  +TF  IL+AC   GLV+ G  +F++M+  Y I P  +HY+CMVDL
Sbjct: 514 KLFNRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDL 573

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542
             RAG LNEA+ +   MP +     W  +L     H +  L +  A+R++E+DP +A AY
Sbjct: 574 LGRAGFLNEALEMTNSMPQKDYPDAWKVLLSSSSLHSNLDLAKLAAQRLLEIDPYDATAY 633

Query: 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
             LS++F+++G  E   +++         K PG S
Sbjct: 634 TVLSNMFSSAGMKEDEEMVKVAQLSNMASKSPGYS 668



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 178/383 (46%), Gaps = 45/383 (11%)

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           P+   L+AL++ Y   G++ DA+++FDR      + W ++++ Y        A  +F  M
Sbjct: 39  PNRAHLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDM 98

Query: 229 R-RNGV--------------------------LEDASTLASVLSACSSLGFLEHGKQVHG 261
             RN                             ++A +  ++++  +  G L   + V+ 
Sbjct: 99  PLRNAASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYW 158

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
                    D + ++A++  Y + G    A ++F  +   D I  + M+      G + +
Sbjct: 159 EMPP--RWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSE 216

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+ +F  MP ++++SW SMI G  ++G   + L LF +M +  ++++  +L+ V+  CA 
Sbjct: 217 ARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQ 276

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIIT 439
            S ++ G QV   +  +G   D  +  SL+  Y + G   DA +LF+ M     +  I++
Sbjct: 277 ASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMN----QKDIVS 332

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE--HYSCMVDLFARAGCLNEAVNLIE 497
           + ++++      ++++    F  M       PE +   ++ MV  FA  G + E+V L E
Sbjct: 333 WNSLITGYVQNDMIEDAHVLFKLM-------PEKDAISWTSMVVGFANRGWMRESVELFE 385

Query: 498 QMPFEADVGMWSSILRGCVAHGD 520
           QMP + ++  W++++   VA+G+
Sbjct: 386 QMPVKDEIA-WAAVMSSLVANGN 407


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  295 bits (754), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 177/602 (29%), Positives = 299/602 (49%), Gaps = 98/602 (16%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C    +++ G+ LH   +K G++NS   +++ L+ MYM+ G       +F+ M  RN
Sbjct: 158 LKACALGMNVYFGELLHGFSVKSGLINSVF-VSSALVDMYMKVGKTEQGCSVFENMTTRN 216

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM--PQKNDFSWNMLISGFAKADLAALEYGKQIHS 129
             SW A+I G +  G     L  F+ M   +    S    ++  A A+   L YGK IH+
Sbjct: 217 VVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHA 276

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
             +  G +  + + ++L  +Y KC             ++PD                   
Sbjct: 277 QTIKQGFNETAYVVNTLGTMYSKC-------------RKPDYVM---------------- 307

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
             R+F + +    V W ++I  Y+   ++  AL  F +MR++ V  +  T ASV+SAC++
Sbjct: 308 --RLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACAN 365

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L   + G+Q+HGHA ++G++D + V+                               N++
Sbjct: 366 LAITKWGEQIHGHALRLGLVDALSVS-------------------------------NSI 394

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT+YS CG +++A  +F  M  K +ISW+++I    Q     EA +    M++   + ++
Sbjct: 395 ITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNE 454

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
           F+LASV+S C +++ LE G+QV A    IGLD + ++ ++L+  Y + G           
Sbjct: 455 FALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDS 514

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +A++LF  + + G+ P  +TF  IL+AC+H GLV  G
Sbjct: 515 IKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLG 574

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             ++  M  +Y I P  EHY C++DL  RAG L+EA +++  MPF  D  +WS++LR C 
Sbjct: 575 FYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRACR 634

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            HGD       AE+M+ L P +A A+I L++I++ SG  E+++ +R +M+ K V K PG 
Sbjct: 635 DHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRKLMKSKGVIKEPGW 694

Query: 577 SW 578
           SW
Sbjct: 695 SW 696



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 205/512 (40%), Gaps = 94/512 (18%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           +P  N  L+  M+ G   +A  +F++M  R+  SW  +I G++   +  ++L LF+ M  
Sbjct: 84  MPELNSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWV 143

Query: 101 KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
            +    +  +   A   L A   G  ++   L++G    S L +S+              
Sbjct: 144 DSGLQKDQFVVSVA---LKACALGMNVYFGELLHGFSVKSGLINSV-------------- 186

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
                      F  SAL+  Y   GK      VF+  T  + V W ++I G +      +
Sbjct: 187 -----------FVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLD 235

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
            L  F +M R+ V  D+ T A  L A +  G L +GK +H    K G  +   V + L  
Sbjct: 236 GLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGT 295

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            YSK   P    +LF ++   D +                               SW ++
Sbjct: 296 MYSKCRKPDYVMRLFGKMSTPDVV-------------------------------SWTNL 324

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           I+   Q G    ALD F  M K D+  ++++ ASVISACAN++  + GEQ+      +GL
Sbjct: 325 IMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGL 384

Query: 401 DSDQIISTSLVDFYCKCGY---------------------------------DALALFNE 427
                +S S++  Y KCG                                  +A    + 
Sbjct: 385 VDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSW 444

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M   G KP      ++LS C    L++ G++   A      +D E   +S ++ +++R+G
Sbjct: 445 MSREGPKPNEFALASVLSVCGSMALLEPGKQ-VHAYALCIGLDHETMVHSALISMYSRSG 503

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            L EA  + + +    D+  W++++ G   HG
Sbjct: 504 NLQEASKIFDSIK-NNDIVSWTAMINGYAEHG 534



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 168/368 (45%), Gaps = 74/368 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++ +C        G+Q+H H L+ G++++ L ++N ++ +Y +CG   +A L+FD M
Sbjct: 356 FASVISACANLAITKWGEQIHGHALRLGLVDA-LSVSNSIITLYSKCGLLQEASLVFDGM 414

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
            R++  SW+ +I  + +  H +++    + M    P+ N+F+   ++S      +A LE 
Sbjct: 415 TRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLS--VCGSMALLEP 472

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H++ L  GLD ++++ S+L+++Y + G+   A+++ + +K  D    +A+I+GYA 
Sbjct: 473 GKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAE 532

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G                                  EA+ LF  +   G++ D  T   +
Sbjct: 533 HGY-------------------------------SQEAISLFENISSVGLMPDYVTFIGI 561

Query: 244 LSACSSLGFLEHG----------KQVHGHACKVGVIDDVIVASALLD--TYSKRGMPSD- 290
           L+AC+  G ++ G           Q+       G I D++  +  L    +  R MP   
Sbjct: 562 LTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPC 621

Query: 291 ----------ACKLFSEL-----KVYDTILLN--------TMITVYSSCGRIEDAKHIFR 327
                     AC+   +L          + L+        T+  +YS+ GR E+A H+ +
Sbjct: 622 DDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRK 681

Query: 328 TMPNKSLI 335
            M +K +I
Sbjct: 682 LMKSKGVI 689


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  295 bits (754), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 175/593 (29%), Positives = 296/593 (49%), Gaps = 113/593 (19%)

Query: 46  RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK---- 101
           +L+  Y  CG+  +   +FD M ++N + WN M+  + K+G  ++S+ LF +M +K    
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 102 ----------------NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSS 145
                           +  SWN +ISG+    L   E G  I+  ++  G+D D     S
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLT--ERGLGIYKQMMYLGIDVDLATIIS 118

Query: 146 LVNLYGKCGDFNSANQVLNM-----MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
           ++    K G  +    V ++      +   +F  + L+  Y+ CG ++ A RVF++  + 
Sbjct: 119 VLVGCAKSGTLSLGKAVHSLAIKSSFERRINFS-NTLLDMYSKCGDLDGALRVFEKMGER 177

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           + V W SMI+GY  +     A++L  +M + GV  D   + S+L AC+  G L++GK VH
Sbjct: 178 NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH 237

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
            +     +  ++ V +AL+D Y+K                               CG +E
Sbjct: 238 DYIKANNMASNLFVCNALMDMYAK-------------------------------CGSME 266

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            A  +F TM  K +ISWN+M+                      +L+ D  ++A ++ ACA
Sbjct: 267 GANSVFSTMVVKDIISWNTMVG---------------------ELKPDSRTMACILPACA 305

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------- 419
           ++S+LE G+++   +   G  SD+ ++ +LVD Y KCG                      
Sbjct: 306 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 365

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +A+A FNEMR+ G++P  ++F +IL AC H GL+++G ++F  MK  +
Sbjct: 366 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 425

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
           +I+P++EHY+CMVDL +R G L++A   IE +P   D  +W ++L GC  + D  L  KV
Sbjct: 426 NIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKV 485

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           AER+ EL+PEN   Y+ L++I+A + +WE+   +R+ + +K + K PGCSW +
Sbjct: 486 AERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIE 538



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 132/307 (42%), Gaps = 52/307 (16%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  +  +L  C    ++ +GK +H   +K       +  +N LL MY +CG+   A
Sbjct: 109 IDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSS-FERRINFSNTLLDMYSKCGDLDGA 167

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADL 118
           L +F++M  RN  SW +MI G+ + G  + ++ L   M ++      + I+    A A  
Sbjct: 168 LRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARS 227

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK----------- 167
            +L+ GK +H +I  N +  +  + ++L+++Y KCG    AN V + M            
Sbjct: 228 GSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV 287

Query: 168 ---EPDDFCLS-----------------------------------ALISGYANCGKMND 189
              +PD   ++                                   AL+  Y  CG +  
Sbjct: 288 GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGL 347

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR +FD       V W  MI+GY  +    EA+  F++MR  G+  D  +  S+L ACS 
Sbjct: 348 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 407

Query: 250 LGFLEHG 256
            G LE G
Sbjct: 408 SGLLEQG 414


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 176/575 (30%), Positives = 276/575 (48%), Gaps = 101/575 (17%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK- 101
           + + L+ MY + G   +A  +FD MP RN  SW  MI G+       ++L LF +M ++ 
Sbjct: 145 VGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREE 204

Query: 102 ---NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
              N+F +  ++S     +L  +  GKQIH   + NGL     +G++LV +Y K      
Sbjct: 205 EGENEFVFTSVLSALTLPEL--VNNGKQIHCIAVKNGLLSIVSVGNALVTMYAK------ 256

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
                                    CG ++DA + F+ ++D +S+ W++MI+GY  + + 
Sbjct: 257 -------------------------CGSLDDALQTFETSSDKNSITWSAMITGYAQSGDS 291

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            +AL LF  M  +G+     T   V++ACS LG    GKQVH +  K+G    + V +AL
Sbjct: 292 DKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTAL 351

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +D Y+K                               C  I DA+  F  +    ++ W 
Sbjct: 352 VDMYAK-------------------------------CSSIVDARKGFDYLQEPDIVLWT 380

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           SMI G  QNG   +AL L+  M    +  ++ ++ASV+ AC+++++LE G+Q+ AR    
Sbjct: 381 SMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKY 440

Query: 399 GLDSDQIISTSLVDFYCKCG---------------------------------YDALALF 425
           G   +  I ++L   Y KCG                                  +AL LF
Sbjct: 441 GFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELF 500

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            EM+  G KP  +TF  ILSAC H GLV+ G  +F  M  ++ +DP +EHY+CMVD+ +R
Sbjct: 501 EEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSR 560

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545
           AG L EA+   E    +  + +W  IL  C  + +  LG    E+++EL  + + AY+ L
Sbjct: 561 AGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLL 620

Query: 546 SSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           SSI++  G WE    +R +M+ + V K PGCSW +
Sbjct: 621 SSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIE 655



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 147/569 (25%), Positives = 241/569 (42%), Gaps = 107/569 (18%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +   LLQ  + + S+  GK LH   +K    +S + IAN L+ +Y +C    +A  +F+ 
Sbjct: 9   FFTALLQYTH-NRSLQKGKALHAQIIKSS--SSCVYIANSLVNLYAKCQRLREAKFVFER 65

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKS--LQLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  ++  SWN +I G+ + G    S  ++LF  M  +N        +G   A    ++  
Sbjct: 66  IQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAA 125

Query: 125 KQIHSHILVNGLD--FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
               +H +   +D   D  +GSSL+N+Y K G    A +V + M E +    + +ISGYA
Sbjct: 126 GGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYA 185

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
                                          S     EAL LF  MRR    E+     S
Sbjct: 186 -------------------------------SQKLAAEALGLFRLMRREEEGENEFVFTS 214

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VLSA +    + +GKQ+H  A K G++  V V +AL+  Y+K G   DA + F      +
Sbjct: 215 VLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKN 274

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
           +I  + MIT                               G +Q+G   +AL LF +M+ 
Sbjct: 275 SITWSAMIT-------------------------------GYAQSGDSDKALKLFSSMHL 303

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
             +R  +F+   VI+AC+++ +   G+QV   +  +G +S   + T+LVD Y KC     
Sbjct: 304 SGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVD 363

Query: 418 ---------------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                GY       DAL+L+  M   G+ P  +T  ++L AC  
Sbjct: 364 ARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSS 423

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
              +++G K   A   +Y    E+   S +  ++A+ GCL +   +  +MP   DV  W+
Sbjct: 424 LAALEQG-KQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPAR-DVISWN 481

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPEN 538
           +++ G       G G++  E   E+  E 
Sbjct: 482 AMISGL---SQNGCGKEALELFEEMQLEG 507


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 182/628 (28%), Positives = 308/628 (49%), Gaps = 114/628 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    S   GK++H   +K   +     +  +L+  Y  CG+  +   +FD M ++
Sbjct: 105 VLQLCAGLKSFTDGKKVH-SIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKK 163

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--------------------NDFSWNMLI 110
           N + WN M+  + K+G  ++S+ LF +M +K                    +  SWN +I
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMI 223

Query: 111 SGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM----- 165
           SG+    L   E G  I+  ++  G+D D     S++      G  +    V ++     
Sbjct: 224 SGYVSNGLT--ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
            +   +F  + L+  Y+ CG ++ A RVF++  + + V W SMI+GY  +     A+ L 
Sbjct: 282 FERRINFS-NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M + GV  D   + S+L AC+  G L++GK VH +     +  ++ V +AL+D Y+K 
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAK- 399

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                                         CG +E A  +F TM  K +ISWN+MI    
Sbjct: 400 ------------------------------CGSMEAANSVFSTMVVKDIISWNTMIG--- 426

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
                             +L+ D  ++A V+ ACA++S+LE G+++   +   G  SD+ 
Sbjct: 427 ------------------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRH 468

Query: 406 ISTSLVDFYCKCGY---------------------------------DALALFNEMRNTG 432
           ++ +LVD Y KCG                                  +A+A FNEMR+ G
Sbjct: 469 VANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAG 528

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           ++P  ++F +IL AC H GL+++G ++F  MK  ++I+P++EHY+CMVDL +R G L++A
Sbjct: 529 IEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKA 588

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
              +E +P   D  +W ++L GC  + D  L  KVAER+ EL+PEN   Y+ L++I+A +
Sbjct: 589 YEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEA 648

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +WE+   +R+ + ++ + K PGCSW +
Sbjct: 649 EKWEEVKRLREKIGKQGLRKNPGCSWIE 676



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 55/330 (16%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           +  T  SVL  C+ L     GK+VH       V  D  +   L+  Y+  G   +  ++F
Sbjct: 98  ETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVF 157

Query: 296 SELKVYDTILLNTMITVYSSCG--------------------RIEDAKHIFRTMPNKSLI 335
             ++  +  L N M++ Y+  G                    R E A  +F  + ++ +I
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVI 217

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           SWNSMI G   NG     L ++  M  L + +D  ++ SV+  CAN  +L LG+ V +  
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277

Query: 396 TIIGLDSDQIISTSLVDFYCKCG---------------------------------YDAL 422
                +     S +L+D Y KCG                                   A+
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAI 337

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            L  +M   GVK  ++  T+IL AC   G +  G+   D +K   +++  +   + ++D+
Sbjct: 338 KLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDM 396

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           +A+ G + EA N +       D+  W++++
Sbjct: 397 YAKCGSM-EAANSVFSTMVVKDIISWNTMI 425


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 190/636 (29%), Positives = 314/636 (49%), Gaps = 108/636 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C     I  G  +H   +K G LN  L + N L+ MY +C   ++A LLFD+ 
Sbjct: 207 LVTVLPVCAGEEDIEKGMAVHGLAVKLG-LNEELMVNNSLIDMYSKCRFLSEAQLLFDKN 265

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP------QKNDFS-WNMLISGFAKADLAA 120
            ++N  SWN+MI G+ +     ++  L   M       + ++F+  N+L     +++L +
Sbjct: 266 DKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQS 325

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L   K++H +   +GL                               + ++   +A I+ 
Sbjct: 326 L---KELHGYSWRHGL-------------------------------QSNELVANAFIAA 351

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y  CG +  + RVFD     +   WN+++ GY  N++  +AL L+ +M  +G+  D  T+
Sbjct: 352 YTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTI 411

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            S+L ACS +  L +G+++HG A + G+  D  +  +LL                     
Sbjct: 412 GSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLL--------------------- 450

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                     ++Y  CG+   A+ +F  M ++SL+SWN MI G SQNG P EA++LF  M
Sbjct: 451 ----------SLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM 500

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
               ++  + ++  V  AC+ +S+L LG+++        L  D  +S+S++D Y K G  
Sbjct: 501 LSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCI 560

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +AL LF +M   G+KP   TFT IL AC
Sbjct: 561 GLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMAC 620

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV++G ++F+ M   ++I+P++EHY+C+VD+  RAG +++A+ LIE+MP + D  +
Sbjct: 621 SHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRI 680

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           WSS+L  C  HG+ GLG KVA +++EL+PE    Y+ +S++FA SG+W+    +R  M++
Sbjct: 681 WSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKD 740

Query: 568 KHVGKLPGCSWAD--GIAFNCWFLDTMFLQLANFDE 601
             + K  GCSW +  G   N    D M  +L    E
Sbjct: 741 IGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRE 776



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 135/563 (23%), Positives = 244/563 (43%), Gaps = 104/563 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C     + +G+ +H    K  +++    + N L+ MY +CG   +A+ +F+ MP R
Sbjct: 107 VIKACAGLLDLGLGQIIHGMATKMDLVSDVF-VGNALIAMYGKCGLVEEAVKVFEHMPER 165

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDFSWNM--LISGFAK-ADLAALEYGKQ 126
           N  SWN++I GF + G  ++S   F  M   +  F  ++  L++     A    +E G  
Sbjct: 166 NLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMA 225

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H   +  GL+ + ++ +SL+++Y KC  F S  Q+L                       
Sbjct: 226 VHGLAVKLGLNEELMVNNSLIDMYSKC-RFLSEAQLL----------------------- 261

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN--GVLEDASTLASVL 244
                  FD+    + V WNSMI GY    +      L  KM+     +  D  T+ +VL
Sbjct: 262 -------FDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
             C     L+  K++HG++ + G+  + +VA                             
Sbjct: 315 PVCLERSELQSLKELHGYSWRHGLQSNELVA----------------------------- 345

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N  I  Y+ CG +  ++ +F  M  K++ SWN+++ G +QN  P +ALDL+  M    
Sbjct: 346 --NAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG 403

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           L  D F++ S++ AC+ + SL  GE++       GL  D  I  SL+  Y  CG      
Sbjct: 404 LDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQ 463

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +A+ LF +M + G++P  I    +  AC    
Sbjct: 464 VLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLS 523

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            ++ G++       + H+  +I   S ++D++A+ GC+  +  + +++  E DV  W+ I
Sbjct: 524 ALRLGKE-LHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNVI 581

Query: 512 LRGCVAHGDKGLGRKVAERMIEL 534
           + G   HG      ++ E+M+ L
Sbjct: 582 IAGYGIHGRGKEALELFEKMLRL 604



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 137/570 (24%), Positives = 239/570 (41%), Gaps = 142/570 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ+C     I VG++LH          +   +  R++ MY  CG+P+D+ ++FD++ R+
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKND-FSWNMLISGFAKADLAALEYGK 125
           N F WNA++  + +    E ++ +F    +V   K D F+   +I   A A L  L  G+
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIK--ACAGLLDLGLGQ 121

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH       L  D  +G++L+ +YGKCG    A +V                       
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKV----------------------- 158

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM--RRNGVLEDASTLASV 243
                   F+   + + V WNS+I G+  N    E+   F +M       + D +TL +V
Sbjct: 159 --------FEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTV 210

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L  C+    +E G  VHG A K+G+ ++++V ++L+D YSK       C+  SE      
Sbjct: 211 LPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSK-------CRFLSE------ 257

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                             A+ +F     K+++SWNSMI G ++         L   M   
Sbjct: 258 ------------------AQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTE 299

Query: 364 DLRM--DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
           D +M  D+F++ +V+  C   S L+  +++       GL S+++++ + +  Y +CG   
Sbjct: 300 DAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALC 359

Query: 419 -----YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACD 448
                +D                         AL L+ +M ++G+ P   T  ++L AC 
Sbjct: 360 SSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 419

Query: 449 HCGLVKEGQKWFD-AMKWQYHIDPEI------------------------EH-----YSC 478
               +  G++    A++    +DP I                        EH     ++ 
Sbjct: 420 RMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNV 479

Query: 479 MVDLFARAGCLNEAVNLIEQM------PFE 502
           M+  +++ G  +EA+NL  QM      P+E
Sbjct: 480 MIAGYSQNGLPDEAINLFRQMLSDGIQPYE 509


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 159/494 (32%), Positives = 249/494 (50%), Gaps = 64/494 (12%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +L  GKQ+HS I+ +G   D  + + L+NLY KCG  ++A  +  +M   +    + LI+
Sbjct: 67  SLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILIN 126

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GY   G    AR++FD   + +   WN+M++G I    + E L LF +M   G L D   
Sbjct: 127 GYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFA 186

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L SVL  C+ L  L  G+QVHG+  K G   +++V S+L   Y K               
Sbjct: 187 LGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMK--------------- 231

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG + + + + R MP++++++WN++I G +QNG P E LD +  
Sbjct: 232 ----------------CGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNM 275

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M     R DK +  SVIS+C+ +++L  G+Q+ A V   G      + +SL+  Y +CG 
Sbjct: 276 MKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGC 335

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+ LFN+M    ++   +TF ++L A
Sbjct: 336 LEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYA 395

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C HCGL ++G K+FD M  +Y + P +EHY+CMVDL  R G + EA  LI  MP +ADV 
Sbjct: 396 CSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVI 455

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            W ++L  C  H    + R+++E +  LDP +   Y+ LS+I A+   W+  S +R  MR
Sbjct: 456 TWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMR 515

Query: 567 EKHVGKLPGCSWAD 580
           ++ + K PG SW +
Sbjct: 516 DRKLKKEPGISWLE 529



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 204/476 (42%), Gaps = 102/476 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LLQSC + +S+ +GKQLH   +  G  +    I+N LL +Y +CG    A+ LF  M
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKF-ISNHLLNLYSKCGQLDTAITLFGVM 113

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
           PR+N  S N +I G+ + G    + ++F+ MP++N  +WN +++G  +            
Sbjct: 114 PRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFS 173

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                A L AL  G+Q+H ++   G +F+ V+ SSL ++Y KCG
Sbjct: 174 RMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCG 233

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
                 +++  M                                  + V WN++I+G   
Sbjct: 234 SLGEGERLIRAM-------------------------------PSQNVVAWNTLIAGRAQ 262

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N    E L  ++ M+  G   D  T  SV+S+CS L  L  G+Q+H    K G    V V
Sbjct: 263 NGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSV 322

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            S+L+  YS+ G    + K+F E +  D +  ++MI  Y   GR                
Sbjct: 323 ISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGR---------------- 366

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-A 393
                           +EA+DLF  M +  L  +  +  S++ AC++    E G + F  
Sbjct: 367 ---------------GVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDL 411

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSAC 447
            V   G+       T +VD   + G   +A AL   +R+  VK  +IT+  +LSAC
Sbjct: 412 MVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEAL---IRSMPVKADVITWKTLLSAC 464



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 165/374 (44%), Gaps = 42/374 (11%)

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +  + S  + +L +C S   L  GKQ+H      G   D  +++ LL+ YSK G    A 
Sbjct: 48  IWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAI 107

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
            LF  +   + +  N +I  Y   G    A+ +F  MP +++ +WN+M+ GL Q     E
Sbjct: 108 TLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEE 167

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
            L LF  MN+L    D+F+L SV+  CA + +L  G QV   V   G + + ++ +SL  
Sbjct: 168 GLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAH 227

Query: 413 FYCKCG---------------------------------YDALALFNEMRNTGVKPTIIT 439
            Y KCG                                  + L  +N M+  G +P  IT
Sbjct: 228 MYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKIT 287

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           F +++S+C     + +GQ+   A   +      +   S ++ +++R GCL  ++ +  + 
Sbjct: 288 FVSVISSCSELATLGQGQQ-IHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLEC 346

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE----NACAYIQLSSIFATSGEW 555
               DV  WSS++    A+G  G G +  +   +++ E    N   ++ L    +  G  
Sbjct: 347 E-NGDVVCWSSMI---AAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLK 402

Query: 556 EKSSLIRDIMREKH 569
           EK     D+M EK+
Sbjct: 403 EKGIKFFDLMVEKY 416


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 194/608 (31%), Positives = 292/608 (48%), Gaps = 102/608 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C   H + +G Q H   +KK  L   L + N L+ MY +CG   DA  +F+ M  R
Sbjct: 434 LLSTCAASHDLEMGSQFHSIIIKKK-LAKNLFVGNALVDMYAKCGALEDARQIFERMCDR 492

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           +  +WN +I  +++  ++ ++  LF  M      S    ++   KA   +  L  GKQ+H
Sbjct: 493 DNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVH 552

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
              +  GLD D   GSSL+++Y K                               CG + 
Sbjct: 553 CLSVKCGLDRDLHTGSSLIDMYSK-------------------------------CGIIK 581

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           DAR+VF    + S V  N++I+GY  NN + EA++LF +M   GV     T A+++ AC 
Sbjct: 582 DARKVFSSLPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACH 640

Query: 249 SLGFLEHGKQVHGHACKVGVIDD-VIVASALLDTY-SKRGMPSDACKLFSELKVYDTILL 306
               L  G Q HG   K G   +   +  +LL  Y + RGM ++AC LFSEL        
Sbjct: 641 KPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGM-TEACALFSELS------- 692

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                                    KS++ W  M+ G SQNG   EAL  +  M    + 
Sbjct: 693 -----------------------SPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVL 729

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D+ +  +V+  C+ +SSL  G  + + +  +  D D++ S +L+D Y KCG        
Sbjct: 730 PDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQV 789

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      DAL +F+ MR + + P  ITF  +L+AC H G 
Sbjct: 790 FDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGK 849

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V +G+K F+ M  QY I+  ++H +CMVDL  R G L EA + IE    + D  +WSS+L
Sbjct: 850 VSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLL 909

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  HGD   G   AE++IEL+P+N+ AY+ LS+I+A+ G WEK++ +R +MR++ V K
Sbjct: 910 GACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKK 969

Query: 573 LPGCSWAD 580
           +PG SW D
Sbjct: 970 VPGYSWID 977



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/553 (25%), Positives = 247/553 (44%), Gaps = 110/553 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +     ++ +G  +H   +K G L S + + + L+ MY +C     A  +F+ +
Sbjct: 330 LGSVLSAIGIVANLDLGLVVHAEAIKLG-LASNIYVGSSLVSMYSKCEKMEAAAKVFEAL 388

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             +N   WNAMI G+   G   K ++LF  M       +DF++  L+S  A +    LE 
Sbjct: 389 EEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASH--DLEM 446

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q HS I+   L  +  +G++LV++Y KCG    A Q                      
Sbjct: 447 GSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQ---------------------- 484

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                    +F+R  D  +V WN++I  Y+ +  ++EA  LF +M   G++ D + LAS 
Sbjct: 485 ---------IFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLAST 535

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L AC+ +  L  GKQVH  + K G+  D+   S+L+D YSK G+  DA K+FS L  +  
Sbjct: 536 LKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSV 595

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           + +N +I  YS    +E+A  +F+ M              L++  +P E           
Sbjct: 596 VSMNALIAGYSQ-NNLEEAVVLFQEM--------------LTRGVNPSE----------- 629

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ------------------- 404
                  + A+++ AC    SL LG Q   ++T  G  S+                    
Sbjct: 630 ------ITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTE 683

Query: 405 --------------IISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACD 448
                         ++ T ++  + + G+  +AL  + EMR+ GV P   TF  +L  C 
Sbjct: 684 ACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCS 743

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYS--CMVDLFARAGCLNEAVNLIEQMPFEADVG 506
               ++EG+     +   +H+  +++  +   ++D++A+ G +  +  + ++M   ++V 
Sbjct: 744 VLSSLREGRAIHSLI---FHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVV 800

Query: 507 MWSSILRGCVAHG 519
            W+S++ G   +G
Sbjct: 801 SWNSLINGYAKNG 813



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 137/562 (24%), Positives = 237/562 (42%), Gaps = 112/562 (19%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ +GK +H   L  GI +S   + N ++ +Y +C   + A   FD +  ++  +WN+M+
Sbjct: 75  ALRIGKAVHSKSLILGI-DSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSML 132

Query: 80  EGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILV 133
             +  +G   K L+ F       + P  N F++++++S  A+     +E+G+QIH  ++ 
Sbjct: 133 SMYSSIGKPGKVLRSFVSLFENQIFP--NKFTFSIVLSTCARE--TNVEFGRQIHCSMIK 188

Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG-------- 185
            GL+ +S  G +LV++Y KC   + A +V   + +P+  C + L SGY   G        
Sbjct: 189 MGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLV 248

Query: 186 ---------------------------KMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
                                      K+ DAR +F   +    V WN MISG+     +
Sbjct: 249 FERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCE 308

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
           T A+  F  MR++ V    STL SVLSA   +  L+ G  VH  A K+G+  ++ V S+L
Sbjct: 309 TVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSL 368

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +  YSK      A K+F  L+  + +  N MI                            
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIR--------------------------- 401

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
               G + NG   + ++LF +M      +D F+  S++S CA    LE+G Q  + +   
Sbjct: 402 ----GYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK 457

Query: 399 GLDSDQIISTSLVDFYCKCGY---------------------------------DALALF 425
            L  +  +  +LVD Y KCG                                  +A  LF
Sbjct: 458 KLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLF 517

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
             M   G+        + L AC H   + +G K    +  +  +D ++   S ++D++++
Sbjct: 518 KRMNLCGIVSDGACLASTLKACTHVHGLYQG-KQVHCLSVKCGLDRDLHTGSSLIDMYSK 576

Query: 486 AGCLNEAVNLIEQMPFEADVGM 507
            G + +A  +   +P  + V M
Sbjct: 577 CGIIKDARKVFSSLPEWSVVSM 598



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 140/583 (24%), Positives = 239/583 (40%), Gaps = 111/583 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G+Q+H   +K G+  ++      L+ MY +C   +DA  +F+ +   
Sbjct: 166 VLSTCARETNVEFGRQIHCSMIKMGLERNSY-CGGALVDMYAKCDRISDARRVFEWIVDP 224

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQ-----------------------------------LF 95
           N   W  +  G++K G  E+++                                    LF
Sbjct: 225 NTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLF 284

Query: 96  NVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
             M   +  +WN++ISG  K   +  A+EY   +    + +     S LGS L  + G  
Sbjct: 285 GEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKST---RSTLGSVLSAI-GIV 340

Query: 154 GDFNSA----NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
            + +       + + +    + +  S+L+S Y+ C KM  A +VF+   + + V WN+MI
Sbjct: 341 ANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMI 400

Query: 210 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
            GY  N E  + + LF  M+ +G   D  T  S+LS C++   LE G Q H    K  + 
Sbjct: 401 RGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLA 460

Query: 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
            ++ V +AL+D Y+K G   DA ++F                                 M
Sbjct: 461 KNLFVGNALVDMYAKCGALEDARQIFER-------------------------------M 489

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
            ++  ++WN++I    Q+ +  EA DLF  MN   +  D   LAS + AC ++  L  G+
Sbjct: 490 CDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGK 549

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------------ 419
           QV       GLD D    +SL+D Y KCG                               
Sbjct: 550 QVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNN 609

Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
             +A+ LF EM   GV P+ ITF  I+ AC     +  G + F     +     E E+  
Sbjct: 610 LEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQ-FHGQITKRGFSSEGEYLG 668

Query: 478 -CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             ++ ++  +  + EA  L  ++     + +W+ ++ G   +G
Sbjct: 669 ISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNG 711



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/511 (24%), Positives = 221/511 (43%), Gaps = 119/511 (23%)

Query: 90  KSLQLFNVMPQKNDFSWNMLISGFAKADLA-ALEYGKQIHSHILVNGLDFDSVLGSSLVN 148
           KS ++F+ MPQ+                LA AL  GK +HS  L+ G+D +  LG+++V+
Sbjct: 60  KSRKVFDEMPQR----------------LALALRIGKAVHSKSLILGIDSEGRLGNAIVD 103

Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
           LY KC   + A +  + +++                          D T       WNSM
Sbjct: 104 LYAKCAQVSYAEKQFDFLEK--------------------------DVTA------WNSM 131

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           +S Y S  +  + L  F  +  N +  +  T + VLS C+    +E G+Q+H    K+G+
Sbjct: 132 LSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGL 191

Query: 269 IDDVIVASALLDTYS-------------------------------KRGMPSDACKLFSE 297
             +     AL+D Y+                               K G+P +A  +F  
Sbjct: 192 ERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFER 251

Query: 298 LK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           ++      D +   T+I  Y   G+++DA+ +F  M +  +++WN MI G  + G    A
Sbjct: 252 MRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVA 311

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           ++ F NM K  ++  + +L SV+SA   +++L+LG  V A    +GL S+  + +SLV  
Sbjct: 312 IEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSM 371

Query: 414 YCKC--------------------------GY-------DALALFNEMRNTGVKPTIITF 440
           Y KC                          GY         + LF +M+++G      TF
Sbjct: 372 YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTF 431

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           T++LS C     ++ G + F ++  +  +   +   + +VD++A+ G L +A  + E+M 
Sbjct: 432 TSLLSTCAASHDLEMGSQ-FHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMC 490

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            + D   W++I+   V   ++     + +RM
Sbjct: 491 -DRDNVTWNTIIGSYVQDENESEAFDLFKRM 520



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 118/260 (45%), Gaps = 43/260 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++++C+   S+ +G Q H    K+G  +    +   LL MYM     T+A  LF E+
Sbjct: 632 FATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSEL 691

Query: 68  PR-RNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAA 120
              ++   W  M+ G  + G  E++L+ +       V+P +  F   + +       L++
Sbjct: 692 SSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSV----LSS 747

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC-LSALIS 179
           L  G+ IHS I     D D +  ++L+++Y KCGD   ++QV + M+   +    ++LI+
Sbjct: 748 LREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLIN 807

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GYA  G   DA ++FD                                MR++ ++ D  T
Sbjct: 808 GYAKNGYAEDALKIFD-------------------------------SMRQSHIMPDEIT 836

Query: 240 LASVLSACSSLGFLEHGKQV 259
              VL+ACS  G +  G+++
Sbjct: 837 FLGVLTACSHAGKVSDGRKI 856



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 40/261 (15%)

Query: 292 CKLFSELKVYDTI----------------------------LLNTMITVYSSCGRIEDAK 323
           CKLF   KV+D +                            L N ++ +Y+ C ++  A+
Sbjct: 56  CKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAE 115

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
             F  +  K + +WNSM+   S  G P + L  F ++ +  +  +KF+ + V+S CA  +
Sbjct: 116 KQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARET 174

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFT 441
           ++E G Q+   +  +GL+ +     +LVD Y KC    DA  +F  +    V P  + +T
Sbjct: 175 NVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWI----VDPNTVCWT 230

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            + S     GL +E    F+ M+ + H  P+   +  +++ + R G L +A  L  +M  
Sbjct: 231 CLFSGYVKAGLPEEAVLVFERMRDEGH-RPDHLAFVTVINTYIRLGKLKDARLLFGEMS- 288

Query: 502 EADVGMWSSILRGCVAHGDKG 522
             DV  W+ ++ G   HG +G
Sbjct: 289 SPDVVAWNVMISG---HGKRG 306


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 198/626 (31%), Positives = 294/626 (46%), Gaps = 117/626 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R   +A +L++     +IH G QLH   LK G  + T+ + N L+ MY +CG    A  +
Sbjct: 3   RRKMIADMLRASAASSAIHGGAQLHGALLKLGFGSDTM-LGNNLIDMYAKCGELRMAGEV 61

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-------NVMPQKNDFSWNMLISGFAKA 116
           F  MP RN  SW A++ GF++ G   + L+L        +V P +   S ++   G    
Sbjct: 62  FGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVV-G 120

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           D+AA   G  IH   +  G +   V+ +SLV LY K G                      
Sbjct: 121 DMAA---GVWIHGACVRAGFEGHHVVANSLVLLYSKGG---------------------- 155

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE- 235
                    ++ DARRVFD T   + V WN+MISGY       ++LL+F +M++    E 
Sbjct: 156 ---------RIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEE 206

Query: 236 ----DASTLASVLSACSSLGFLEHGKQVHGHACKVGV--IDDVIVASALLDTYSKRGMPS 289
               D  T AS+L AC SLG    G QVH      GV    + I+A ALLD Y K     
Sbjct: 207 DHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVK----- 261

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
             C+    +                       A  +F  +  K+ I W ++IVG +Q G 
Sbjct: 262 --CRCLLPM-----------------------AMQVFNRLEQKNAIQWTTVIVGHAQEGQ 296

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV--FARVTIIGLDSDQIIS 407
             EA++LF       +R D   L+SV+   A+ + +E G QV  +   T  GLD    ++
Sbjct: 297 VKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVS--VA 354

Query: 408 TSLVDFYCKCG---------------------------------YDALALFNEMRNTGVK 434
            SL+D Y KCG                                  +A+ +F EMR  GV+
Sbjct: 355 NSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVE 414

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P  + + A+LSAC H GLV+E +++F A++    + P  EHY+CMVDL  RAG L+EA +
Sbjct: 415 PDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKD 474

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
           L+  MP    VG+W ++L  C  H +  +GR+  E ++ +D +N   Y+ LS+IFA +G+
Sbjct: 475 LVATMPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGD 534

Query: 555 WEKSSLIRDIMREKHVGKLPGCSWAD 580
           W +   +R  MR + + K  GCSW +
Sbjct: 535 WRECQRVRGAMRRRGLRKQGGCSWVE 560


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 183/580 (31%), Positives = 289/580 (49%), Gaps = 76/580 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C+T   +H GK +H + +K   L + + +A  L+ MY +C    +A  LF  +
Sbjct: 137 LGSVLRACSTLSLLHTGKMIHCYAIKIQ-LEANIFVATGLVDMYSKCKCLLEAEYLFFSL 195

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALE 122
           P R+N   W AM+ G+ + G   K++Q F  M     + N F++  +++  A   ++A  
Sbjct: 196 PDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILT--ACTSISAYA 253

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           +G+Q+H  I+ +G                                 P+ +  SAL+  YA
Sbjct: 254 FGRQVHGCIIWSGFG-------------------------------PNVYVQSALVDMYA 282

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            CG +  AR + D       V WNSMI G +++    EAL+LFHKM    +  D  T  S
Sbjct: 283 KCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPS 342

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL + +S   L+ G+ VH    K G                      DACK  S      
Sbjct: 343 VLKSLASCKNLKIGESVHSLTIKTGF---------------------DACKTVS------ 375

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
               N ++ +Y+  G +  A  +F  + +K +ISW S++ G   NG   +AL LFC+M  
Sbjct: 376 ----NALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRT 431

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YD 420
             + +D+F +A V SACA ++ +E G QV A        S      SL+  Y KCG   D
Sbjct: 432 ARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLED 491

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           A+ +F+ M    V    I++TAI+      GLV+ GQ +F++M+  Y I P  +HY+CM+
Sbjct: 492 AIRVFDSMETRNV----ISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDHYACMI 547

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540
           DL  RAG +NEA +L+ +M  E D  +W S+L  C  HG+  LG +  + +I+L+P N+ 
Sbjct: 548 DLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSL 607

Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            Y+ LS++F+ +G WE ++ IR  M+   + K PG SW +
Sbjct: 608 PYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIE 647



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 139/526 (26%), Positives = 235/526 (44%), Gaps = 73/526 (13%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N+LL    + G   +A  LFD+MP R+ ++WN MI  +  LG+  ++ +LFN  P KN 
Sbjct: 40  SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNS 99

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV- 162
            +W+ L+SG+ K        G +  S +  +G         S++         ++   + 
Sbjct: 100 ITWSSLVSGYCKNGCEV--EGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIH 157

Query: 163 ---LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNED 218
              + +  E + F  + L+  Y+ C  + +A  +F    D  + V W +M++GY  N E 
Sbjct: 158 CYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGES 217

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            +A+  F +MR  G+  +  T  S+L+AC+S+     G+QVHG     G   +V V SAL
Sbjct: 218 LKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSAL 277

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +D Y+K                               CG +  A+ I  TM    ++ WN
Sbjct: 278 VDMYAK-------------------------------CGDLASARMILDTMEIDDVVCWN 306

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           SMIVG   +G   EAL LF  M+  D+R+D F+  SV+ + A+  +L++GE V +     
Sbjct: 307 SMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKT 366

Query: 399 GLDSDQIISTSLVDFYCK-----CGYD----------------------------ALALF 425
           G D+ + +S +LVD Y K     C  D                            AL LF
Sbjct: 367 GFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLF 426

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            +MR   V         + SAC    +++ G++   A   +      +   + ++ ++A+
Sbjct: 427 CDMRTARVDLDQFVVACVFSACAELTVIEFGRQ-VHANFIKSSAGSLLSAENSLITMYAK 485

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            GCL +A+ + + M    +V  W++I+ G   +G    G+   E M
Sbjct: 486 CGCLEDAIRVFDSMETR-NVISWTAIIVGYAQNGLVETGQSYFESM 530



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 178/385 (46%), Gaps = 64/385 (16%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D RID      +L+S  +  ++ +G+ +H   +K G  ++   ++N L+ MY + GN + 
Sbjct: 332 DIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTG-FDACKTVSNALVDMYAKQGNLSC 390

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGF-AKAD 117
           AL +F+++  ++  SW +++ G++  G  EK+LQLF ++   + D    ++   F A A+
Sbjct: 391 ALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAE 450

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L  +E+G+Q+H++ + +         +SL+ +Y KCG    A +V + M+  +    +A+
Sbjct: 451 LTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAI 510

Query: 178 ISGYANCGKMNDARRVFDRTTDT-----SSVMWNSMI-----SGYISNNEDTEALLLFHK 227
           I GYA  G +   +  F+          +S  +  MI     +G I+  E        H 
Sbjct: 511 IVGYAQNGLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAE--------HL 562

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           + R  V  DA+   S+LSAC   G LE G++   +  K+                     
Sbjct: 563 LNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLE-------------------- 602

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM--------PNKSLISWNS 339
           PS++            +LL+ M +V    GR EDA HI R M        P  S I   S
Sbjct: 603 PSNSLPY---------VLLSNMFSV---AGRWEDAAHIRRAMKTMGINKEPGYSWIEMKS 650

Query: 340 MI-VGLSQNGSPIEALDLFCNMNKL 363
            +   +S++ S   A +++  ++++
Sbjct: 651 QVHTFISEDRSHPLAAEIYSKIDEM 675


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 184/607 (30%), Positives = 297/607 (48%), Gaps = 100/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C +   + +GKQLH   +K    +S L   N L+ MY+R    +DA  +F  +P +
Sbjct: 174 IIKACASSSDVGLGKQLHAQVIKLES-SSHLIAQNALIAMYVRFNQMSDASRVFYGIPMK 232

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL---EYGKQI 127
           +  SW+++I GF +LG + ++L     M     F  N  I G +    ++L   +YG QI
Sbjct: 233 DLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQI 292

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H   + + L  +++ G SL ++Y                               A CG +
Sbjct: 293 HGLCIKSELAGNAIAGCSLCDMY-------------------------------ARCGFL 321

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           N ARRVFD+     +  WN +I+G  +N    EA+ +F +MR +G + DA +L S+L A 
Sbjct: 322 NSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQ 381

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           +    L  G Q+H +  K G + D+ V                                N
Sbjct: 382 TKPMALSQGMQIHSYIIKWGFLADLTVC-------------------------------N 410

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           +++T+Y+ C  +    ++F    N +  +SWN+++    Q+  P+E L LF  M   +  
Sbjct: 411 SLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECE 470

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  ++ +++  C  ISSL+LG QV       GL  +Q I   L+D Y KCG        
Sbjct: 471 PDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRI 530

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL LF EM++ G++P  +TF  +L+AC H GLV
Sbjct: 531 FDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLV 590

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG K +  M+ ++ I P  EH SC+VDL ARAG LNEA   I++M  E DV +W ++L 
Sbjct: 591 EEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLS 650

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C   G+  L +K AE ++++DP N+ A++ L S+ A+SG WE ++L+R  M++  V K+
Sbjct: 651 ACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKI 710

Query: 574 PGCSWAD 580
           PG SW +
Sbjct: 711 PGQSWIE 717



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 134/563 (23%), Positives = 229/563 (40%), Gaps = 109/563 (19%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+     L+ +C++  S+  G+++H H L       T+ + N +L MY +CG+  DA  +
Sbjct: 66  RLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTI-LNNHILSMYGKCGSLRDAREV 124

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
           FD MP RN  S+ ++I G+ + G   ++++L+  M Q+    + F++  +I   A +   
Sbjct: 125 FDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDV 184

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L  GKQ+H+                               QV+ +         +ALI+
Sbjct: 185 GL--GKQLHA-------------------------------QVIKLESSSHLIAQNALIA 211

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DAS 238
            Y    +M+DA RVF        + W+S+I+G+     + EAL    +M   GV   +  
Sbjct: 212 MYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEY 271

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
              S L ACSSL   ++G Q+HG   K  +  + I   +L D Y++ G  + A ++F ++
Sbjct: 272 IFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQI 331

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
           +  DT                                SWN +I GL+ NG   EA+ +F 
Sbjct: 332 ERPDT-------------------------------ASWNVIIAGLANNGYADEAVSVFS 360

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M       D  SL S++ A     +L  G Q+ + +   G  +D  +  SL+  Y  C 
Sbjct: 361 QMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCS 420

Query: 419 --YDALALFNEMRNTG--------------------------------VKPTIITFTAIL 444
             Y    LF + RN                                   +P  IT   +L
Sbjct: 421 DLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLL 480

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
             C     +K G +       +  + PE    + ++D++A+ G L +A  + + M    D
Sbjct: 481 RGCVEISSLKLGSQ-VHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMD-NRD 538

Query: 505 VGMWSSILRGCVAHGDKGLGRKV 527
           V  WS+++   V +   G G + 
Sbjct: 539 VVSWSTLI---VGYAQSGFGEEA 558



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 143/358 (39%), Gaps = 69/358 (19%)

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEH 255
           T  T  +M N  I+    +N   EAL  F   ++N   +    T  S++ ACSS   L  
Sbjct: 27  TIKTEELM-NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQ 85

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G+++H H        D I+ + +L  Y K G   DA                        
Sbjct: 86  GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDA------------------------ 121

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                  + +F  MP ++L+S+ S+I G SQNG   EA+ L+  M + DL  D+F+  S+
Sbjct: 122 -------REVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSI 174

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------- 418
           I ACA+ S + LG+Q+ A+V  +   S  I   +L+  Y +                   
Sbjct: 175 IKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDL 234

Query: 419 ----------------YDALALFNEMRNTGV-KPTIITFTAILSACDHCGLVKEGQKWFD 461
                           ++AL+   EM + GV  P    F + L AC        G +   
Sbjct: 235 ISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQ-IH 293

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            +  +  +         + D++AR G LN A  + +Q+    D   W+ I+ G   +G
Sbjct: 294 GLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIE-RPDTASWNVIIAGLANNG 350



 Score = 40.4 bits (93), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 43/188 (22%)

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
           +EA D     +   +R+  +   S+I AC++  SL  G ++           D I++++ 
Sbjct: 51  LEAFDFAQKNSSFKIRLRTY--ISLICACSSSRSLAQGRKIH----------DHILNSN- 97

Query: 411 VDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
                 C YD               TI+    ILS    CG +++ ++ FD M      +
Sbjct: 98  ------CKYD---------------TILN-NHILSMYGKCGSLRDAREVFDFMP-----E 130

Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKV 527
             +  Y+ ++  +++ G   EA+ L  +M  E    D   + SI++ C +  D GLG+++
Sbjct: 131 RNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQL 190

Query: 528 AERMIELD 535
             ++I+L+
Sbjct: 191 HAQVIKLE 198


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 202/655 (30%), Positives = 325/655 (49%), Gaps = 85/655 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL++  +   IH   Q+H   L  G     LP+   L+   +   +   A  + D+ 
Sbjct: 2   LLSLLRTATSLTQIH---QIHAQTLIHG-----LPLQTHLIPKLIDLHSIDYARFVLDQT 53

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
           P    FSWN++I  +   G  + SL L+  M + +    N       KA   L ++  G+
Sbjct: 54  PSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGE 113

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+H+L  G   D  + +SL+++Y KC   +SA    + M   D+   +++ISGY   G
Sbjct: 114 QIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWG 173

Query: 186 KMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKM--RRNGVLEDASTLAS 242
           ++  AR +F+      +V+ W +MI+GY    +  E L LF +M    + V  +A+T+  
Sbjct: 174 QVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVC 233

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +LSACS+L   E G+ +                S  +D      +P             +
Sbjct: 234 LLSACSTLCNYEVGRFL----------------SVFIDV---NKIP------------LN 262

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
           TIL+  +I +YS CG +E A  IF  +  K+L SWN++I G  Q G   EA+DL+ +M  
Sbjct: 263 TILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKA 322

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
             ++ ++ +L +V+SACA + +LELG +V   +   GLD + I++T+LVD Y KCG    
Sbjct: 323 QSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDD 382

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         D+LA+F++M   GV+P  +TF  +LSAC+H
Sbjct: 383 ACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNH 442

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV+EG+  F +M  ++ + P++EHY+CMVDL  RAG L EA  L++ M    D  +W 
Sbjct: 443 SGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWG 502

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           ++L  C  H +  L  K++E ++     N    I LS+I+A+SG W+  + +R  ++EK 
Sbjct: 503 ALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKR 562

Query: 570 VGKLPGCSW--ADGIAFNCWFLDTMFLQ----LANFDEIKQHQSADFCDYIHGFD 618
           + K  GCSW   DG+       DT  L+       ++ +  H  A+   Y+  FD
Sbjct: 563 IKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIYGAYEILVNHLKAE--GYVANFD 615


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 185/619 (29%), Positives = 311/619 (50%), Gaps = 73/619 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    S   G  +H      G   +   + N L+ MY RCG   +A  +FDEM  R
Sbjct: 151 VLKACGEIPSFRCGASVHAVVFASGFEWNVF-VGNGLVSMYGRCGAWENARQVFDEMRER 209

Query: 71  ---NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM--LISGF-AKADLAALEYG 124
              +  SWN+++  +M+ G   +++++F  M +      +   L++   A A + A   G
Sbjct: 210 GVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 269

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQ+H + L +GL  D  +G+++V++Y KCG    AN+V   MK  D    +A+++GY+  
Sbjct: 270 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 329

Query: 185 GKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           G+ +DA  +F++  +     + V W+++I+GY       EAL +F +M   G   +  TL
Sbjct: 330 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTL 389

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            S+LS C+S G L HGK+ H HA K  +  D                P D          
Sbjct: 390 VSLLSGCASAGTLLHGKETHCHAIKWILNLD-------------ENDPGD---------- 426

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFC 358
            D +++N +I +YS C   + A+ +F  +P  ++S+++W  +I G +Q+G   EAL+LF 
Sbjct: 427 -DLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFS 485

Query: 359 NMNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYC 415
            M + D  +  + F+++  + ACA + +L  G Q+ A V     +S  + ++  L+D Y 
Sbjct: 486 QMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYS 545

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           K G                                  +AL +F EM+   + P  +TF  
Sbjct: 546 KSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVV 605

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L AC H G+V +G  +F+ M   + + P  EHY+CMVDL +RAG L+EA+ LI  MP +
Sbjct: 606 VLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMK 665

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W ++L  C  + +  LG   A +++EL+  N  +Y  LS+I+A +  W+  + IR
Sbjct: 666 PTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIR 725

Query: 563 DIMREKHVGKLPGCSWADG 581
            +M+   + K PGCSW  G
Sbjct: 726 YLMKNTGIKKRPGCSWVQG 744



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 144/569 (25%), Positives = 263/569 (46%), Gaps = 93/569 (16%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D  + L   C    S+   +  H   L +G+ +        ++ MY+   +P  AL +  
Sbjct: 49  DLTSTLFHQCK---SLASAELTHQQLLVQGLPHDP----THIISMYLTFNSPAKALSVLR 101

Query: 66  EM--PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLA 119
            +       F WN +I   + LG  E  LQL+  M     + + +++  ++   A  ++ 
Sbjct: 102 RLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLK--ACGEIP 159

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +   G  +H+ +  +G +++  +G+ LV++YG+CG + +A QV + M+E           
Sbjct: 160 SFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRE----------- 208

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDAS 238
                      R V D       V WNS+++ Y+   +   A+ +F +M  + G+  DA 
Sbjct: 209 -----------RGVGDL------VSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAV 251

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           +L +VL AC+S+G    GKQVHG+A + G+ +DV V +A++D Y+K GM  +A K+F  +
Sbjct: 252 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 311

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEAL 354
           KV D +  N M+T YS  GR +DA  +F  +  + +    ++W+++I G +Q G   EAL
Sbjct: 312 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 371

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT--IIGLDS-----DQIIS 407
           D+F  M       +  +L S++S CA+  +L  G++        I+ LD      D ++ 
Sbjct: 372 DVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVI 431

Query: 408 TSLVDFYCKC-----------------------------------GYDALALFNEM--RN 430
            +L+D Y KC                                     +AL LF++M   +
Sbjct: 432 NALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 491

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
             V P   T +  L AC   G ++ G++    +         +   +C++D+++++G ++
Sbjct: 492 NFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVD 551

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            A  + + M     V  W+S++ G   HG
Sbjct: 552 AARVVFDNMHQRNGVS-WTSLMTGYGMHG 579


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 191/688 (27%), Positives = 340/688 (49%), Gaps = 72/688 (10%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           +D+   LLQ C+  H   + +Q+H   +  G   S   +A R++ +Y   G  +DA  +F
Sbjct: 34  LDFFNDLLQQCSKSH---LSQQIHSQIIVTGSHRSAF-LAARVVSVYAGFGLVSDAQRVF 89

Query: 65  DEMPRRNCFS----WNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKA 116
           +  P   CFS    WN+++   +  G+ E++L+++  M +     + F++ ++I   A A
Sbjct: 90  EVSPIE-CFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIR--ACA 146

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            + + +  + +H H++  G  ++  +G+ L+ +YGK G  + A +V   M        + 
Sbjct: 147 LMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNT 206

Query: 177 LISGYA---NCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
           ++SGYA   +C   ++  R+      + + V W S++S +    +  E + LF +MR  G
Sbjct: 207 MVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRG 266

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +   A  LA VLS    L   + GK +HG+  K G  + + V ++L+  Y K G  + A 
Sbjct: 267 IGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAAR 326

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF--------RTMPNKSLISWNSMIVGL 344
            LF E+K  + +  N +I+ Y+  G  ++A  IF          M   +++SW+++I G 
Sbjct: 327 ILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGF 386

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
           +  G   EAL+LF  M    ++ +  ++ASV+S CA +++L LG ++   V    +D + 
Sbjct: 387 ASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNI 446

Query: 405 IISTSLVDFYCKCG---------------------------------YDALALFNEMRNT 431
           ++   L++ Y K G                                  +A+  F++M   
Sbjct: 447 LVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKD 506

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
           G +P  +TF A+LSAC H GLV EG++ FD M  ++ ++P++EHY+CMVDL  RAG L E
Sbjct: 507 GFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQE 566

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551
           A  +++ MP E +  +W ++L  C  H +  +  + A ++  L+ E A +Y+ LS+I+A 
Sbjct: 567 ASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAA 626

Query: 552 SGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQ-----HQ 606
           SG WE S+ +R   + K + K PG SW   +    +       Q A  +E+ +       
Sbjct: 627 SGRWEDSAKVRISAKTKGLKKTPGQSWIQ-VKKKVYMFSAGNTQHAELEEVYRILKDLGL 685

Query: 607 SADFCDYIHGFDQARLPLSSKRSFVLGY 634
             +   YI   D+       +RS +LGY
Sbjct: 686 QMEVEGYIPDIDE------EQRSILLGY 707


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 200/654 (30%), Positives = 314/654 (48%), Gaps = 116/654 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C    ++  G++ H   +K G L+  L + N LL MY +CG   DA+ LFD M
Sbjct: 143 LASVLSACGAVAALDDGRRCHGLAVKVG-LDENLFVENALLGMYTKCGGVEDAVRLFDGM 201

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA------D 117
              N  S+ AM+ G ++ G  + +L+LF  M +     +  + + ++   A+A       
Sbjct: 202 ASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDV 261

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC------------------------ 153
           + A   G+ IH+ I+  G   D  +G+SL+++Y KC                        
Sbjct: 262 VRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNIL 321

Query: 154 -------GDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMND---ARRVFDRTTD 199
                  G +  A +VLN+M+E    P++   S ++   A+C K  D   AR +FD+ + 
Sbjct: 322 ITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNML---ASCIKARDVLSARAMFDKISR 378

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            S   WN+++SGY       + + LF +M+   V  D +TLA +LS+CS LG L+ G QV
Sbjct: 379 PSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQV 438

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H  + +  + +D+ VAS L+D YSK                               CG+I
Sbjct: 439 HSASVRFLLHNDMFVASGLVDMYSK-------------------------------CGQI 467

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
             A+ IF  M  + ++ WNSMI GL+ +    EA D F  M    +   + S AS+I++C
Sbjct: 468 GIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSC 527

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD----------- 420
           A +SS+  G Q+ A++   G D +  + ++L+D Y KCG        +D           
Sbjct: 528 ARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWN 587

Query: 421 --------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                         A+ LF  M  T  +P  +TF A+L+ C H GLV E   +F++M+  
Sbjct: 588 EMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMEST 647

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           Y I P  EHY+C++D   RAG L E   LI+ MP + D  +W  +L  C  H +  LG  
Sbjct: 648 YGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACAVHHNAELGEC 707

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            A+ +  LDP+N   Y+ LS+I+A+ G    +S +R +M  + V K  G SW D
Sbjct: 708 AAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSRGVVKGRGYSWID 761



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 146/607 (24%), Positives = 269/607 (44%), Gaps = 95/607 (15%)

Query: 8   LARLLQSC---NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           LA +LQ+C   +   S    +  H   L  G+   T  I NRL+++Y   G P DAL  F
Sbjct: 8   LAGVLQACIKRSPKPSRAHARAAHARVLAAGLGADTFLI-NRLVELYSVSGLPCDALRAF 66

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA--ALE 122
             +PR N +S+NA +    + G  + +  L + MP +N  SWN +I+  A+++ A  ALE
Sbjct: 67  RSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALE 126

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALI 178
               ++  +L  GL       +S+++  G     +   +     + +  + + F  +AL+
Sbjct: 127 ----LYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALL 182

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
             Y  CG + DA R+FD     + V + +M+ G +      +AL LF +M R+GV  D  
Sbjct: 183 GMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPV 242

Query: 239 TLASVLSACSSLGFLEH--------GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
            ++SVL +C+     E         G+ +H    + G   D  V ++L+D Y+K     +
Sbjct: 243 AVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDE 302

Query: 291 ACKLFSELKVYDTILLNTMITVY--------------------------------SSCGR 318
           A K+F  L    T+  N +IT +                                +SC +
Sbjct: 303 AVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIK 362

Query: 319 IED---AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
             D   A+ +F  +   S+ +WN+++ G  Q     + ++LF  M   +++ D+ +LA +
Sbjct: 363 ARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVI 422

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
           +S+C+ +  L+LG QV +      L +D  +++ LVD Y KCG                 
Sbjct: 423 LSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDV 482

Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                            +A   F +MR  G+ PT  ++ +++++C     V +G++   A
Sbjct: 483 VCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQ-IHA 541

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
              +   D  +   S ++D++A+ G +++A    + M    ++  W+ ++ G   +   G
Sbjct: 542 QIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCM-VTKNIVAWNEMIHG---YAQNG 597

Query: 523 LGRKVAE 529
            G K  +
Sbjct: 598 FGEKAVD 604



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M T   Y A ++ SC    S+  G+Q+H   +K G  +  + + + L+ MY +CGN  DA
Sbjct: 514 MPTESSY-ASMINSCARLSSVPQGRQIHAQIVKDG-YDQNVYVGSALIDMYAKCGNMDDA 571

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
            + FD M  +N  +WN MI G+ + G  EK++ LF  M
Sbjct: 572 RVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYM 609


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 181/628 (28%), Positives = 309/628 (49%), Gaps = 114/628 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    S+  GK++H   +K   +     +  +L+  Y  CG+  +   +FD M ++
Sbjct: 105 VLQLCAGLKSLTDGKKVH-SIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKK 163

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--------------------NDFSWNMLI 110
           N + WN M+  + K+G  ++S+ LF +M +K                    +  SWN +I
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMI 223

Query: 111 SGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM----- 165
           SG+    L   E G  I+  ++  G+D D     S++      G  +    V ++     
Sbjct: 224 SGYVSNGLT--ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
            +   +F  + L+  Y+ CG ++ A RVF++  + + V W SMI+GY  +     A++L 
Sbjct: 282 FERRINFS-NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 340

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M + GV  D   + S+L AC+  G L++GK VH +     +  ++ V +AL+D Y+K 
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK- 399

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                                         CG +E A  +F TM  K +ISWN+M+    
Sbjct: 400 ------------------------------CGSMEGANSVFSTMVVKDIISWNTMVG--- 426

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
                             +L+ D  ++A ++ ACA++S+LE G+++   +   G  SD+ 
Sbjct: 427 ------------------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRH 468

Query: 406 ISTSLVDFYCKCGY---------------------------------DALALFNEMRNTG 432
           ++ +LVD Y KCG                                  +A+A FNEMR+ G
Sbjct: 469 VANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAG 528

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           ++P  ++F +IL AC H GL+++G ++F  MK  ++I+P++EHY+CMVDL +R G L++A
Sbjct: 529 IEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKA 588

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
              IE +P   D  +W ++L GC  + D  L  KVAER+ EL+PEN   Y+ L++I+A +
Sbjct: 589 YKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEA 648

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            + E+   +R+ + +K + K PGCSW +
Sbjct: 649 EKREEVKRMREKIGKKGLRKNPGCSWIE 676



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 217/479 (45%), Gaps = 69/479 (14%)

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK-ADLAALEYGKQIHSHILV 133
           +NA I  F +LG  E +++L   M QK++       S     A L +L  GK++HS I  
Sbjct: 69  YNAKILHFCQLGDLENAMELV-CMCQKSELETKTYGSVLQLCAGLKSLTDGKKVHSIIKS 127

Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND---- 189
           N +  D  LG  LV+ Y  CGD     +V + M++ + +  + ++S YA  G   +    
Sbjct: 128 NSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICL 187

Query: 190 ----------------ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                           A  +FD+  D   + WNSMISGY+SN      L ++ +M   G+
Sbjct: 188 FKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI 247

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
             D +T+ SVL  C++ G L  GK VH  A K      +  ++ LLD YSK         
Sbjct: 248 DVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSK--------- 298

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                                 CG ++ A  +F  M  ++++SW SMI G +++G    A
Sbjct: 299 ----------------------CGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGA 336

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           + L   M K  +++D  ++ S++ ACA   SL+ G+ V   +    + S+  +  +L+D 
Sbjct: 337 IILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDM 396

Query: 414 YCKCG--YDALALFNEMR-------NTGV---KPTIITFTAILSACDHCGLVKEGQKWFD 461
           Y KCG    A ++F+ M        NT V   KP   T   IL AC     ++ G++   
Sbjct: 397 YAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHG 456

Query: 462 -AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             ++  Y  D  + +   +VDL+ + G L  A  L + +P   D+  W+ ++ G   HG
Sbjct: 457 YILRNGYSSDRHVAN--ALVDLYVKCGVLGLARLLFDMIP-SKDLVSWTVMIAGYGMHG 512



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 132/307 (42%), Gaps = 52/307 (16%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  +  +L  C    ++ +GK +H   +K       +  +N LL MY +CG+   A
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS-FERRINFSNTLLDMYSKCGDLDGA 305

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADL 118
           L +F++M  RN  SW +MI G+ + G  + ++ L   M ++      + I+    A A  
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARS 365

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK----------- 167
            +L+ GK +H +I  N +  +  + ++L+++Y KCG    AN V + M            
Sbjct: 366 GSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV 425

Query: 168 ---EPDDFCLS-----------------------------------ALISGYANCGKMND 189
              +PD   ++                                   AL+  Y  CG +  
Sbjct: 426 GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGL 485

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR +FD       V W  MI+GY  +    EA+  F++MR  G+  D  +  S+L ACS 
Sbjct: 486 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 545

Query: 250 LGFLEHG 256
            G LE G
Sbjct: 546 SGLLEQG 552


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 188/613 (30%), Positives = 302/613 (49%), Gaps = 108/613 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A + +SC    ++ +G QLH H LK     + + I    L MYM+C N +DA  LF+ +
Sbjct: 278 FASVFRSCAGLSALRLGSQLHGHALKTD-FGTDVVIGTATLDMYMKCNNLSDAQKLFNSL 336

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML-ISG------FAKADLAA 120
           P  N  S+NA+I G+ +     ++L +F ++ QK+    + + +SG        K DL  
Sbjct: 337 PNHNLQSYNAIIVGYARSDKGIEALGMFRLL-QKSGLGLDEVSLSGAFRACAVIKGDLEG 395

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L+          V+GL   S+  S++            AN +L+M               
Sbjct: 396 LQ----------VHGLSMKSLCQSNIC----------VANAILDM--------------- 420

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y  CG + +A  VF+      +V WN++I+ +  N  + + L LF  M ++G+  D  T 
Sbjct: 421 YGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTY 480

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SVL AC+    L  G ++H    K  +  D  V  AL+D YSK                
Sbjct: 481 GSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSK---------------- 524

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CG +E A+ +   +  ++++SWN++I G S      EA   F  M
Sbjct: 525 ---------------CGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM 569

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            ++ +  D F+ A+++  CAN+ ++ELG+Q+ A++    L SD  IS++LVD Y KCG  
Sbjct: 570 LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNM 629

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +AL +F  M+   VKP   TF A+L AC
Sbjct: 630 QDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRAC 689

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV++G  +F +M   Y +DP++EHYSC+VD+  R+G +++A+ LIE MPFEAD  +
Sbjct: 690 GHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVI 749

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L  C  HG+  +  K A  +++L+PE++ AY+ LS+I+A +G W + + +R +MR 
Sbjct: 750 WRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRF 809

Query: 568 KHVGKLPGCSWAD 580
             + K PGCSW +
Sbjct: 810 NGLKKEPGCSWIE 822



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 158/582 (27%), Positives = 267/582 (45%), Gaps = 89/582 (15%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T+    + + Q C+   ++  GKQ H   +       T+ + N L+QMY++C +   A  
Sbjct: 40  TKKKTFSHIFQECSDRKALCPGKQAHARMILTE-FKPTVFVTNCLIQMYIKCSDLEFAFK 98

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122
           +FD MP+R+  SWNAM+ G+   G    + +LF+ MP+++  SWN LISG+    L   +
Sbjct: 99  VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGY----LHNGD 154

Query: 123 YGKQIHSHILVN--GLDFD----SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           + K I   + +   G  FD    +V+  S  +L    G        + M  + D    SA
Sbjct: 155 HRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSA 214

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+  YA C K++ + + F    + + V W+++I+G + N++    L LF +M++ GV   
Sbjct: 215 LLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVS 274

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
            ST ASV  +C+ L  L  G Q+HGHA K     DV++ +A LD Y K    SDA KLF+
Sbjct: 275 QSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFN 334

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            L                               PN +L S+N++IVG +++   IEAL +
Sbjct: 335 SL-------------------------------PNHNLQSYNAIIVGYARSDKGIEALGM 363

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  + K  L +D+ SL+    ACA I     G QV          S+  ++ +++D Y K
Sbjct: 364 FRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGK 423

Query: 417 CGY---------------------------------DALALFNEMRNTGVKPTIITFTAI 443
           CG                                    L+LF  M  +G++P   T+ ++
Sbjct: 424 CGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSV 483

Query: 444 LSACD-----HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           L AC      +CG+    +     +K +  +D  +     ++D++++ G + +A  L ++
Sbjct: 484 LKACAGWQALNCGMEIHNR----IIKSRLGLDSFVG--IALIDMYSKCGMMEKAEKLHDR 537

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL--DPEN 538
           +  E  V  W++I+ G          +K   +M+E+  DP+N
Sbjct: 538 LA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 578



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/560 (25%), Positives = 243/560 (43%), Gaps = 102/560 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L+SC++      G Q+H   +K G  +  +   + LL MY +C     ++  F  M
Sbjct: 177 FAVVLKSCSSLEDHGGGIQIHGLAVKMG-FDCDVVTGSALLDMYAKCKKLDCSIQFFHSM 235

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-ADLAALEYGK 125
           P +N  SW+A+I G ++       L+LF  M +     S +   S F   A L+AL  G 
Sbjct: 236 PEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGS 295

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H H L      D V+G++ +++Y KC +                              
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNN------------------------------ 325

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++DA+++F+   + +   +N++I GY  +++  EAL +F  ++++G+  D  +L+    
Sbjct: 326 -LSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFR 384

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ +     G QVHG + K     ++ VA+A+LD Y K G   +AC +F E        
Sbjct: 385 ACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEE-------- 436

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                  M ++  +SWN++I    QNG+  + L LF  M +  +
Sbjct: 437 -----------------------MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGM 473

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             D+F+  SV+ ACA   +L  G ++  R+    L  D  +  +L+D Y KCG       
Sbjct: 474 EPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEK 533

Query: 419 -YDALA-------------------------LFNEMRNTGVKPTIITFTAILSACDHCGL 452
            +D LA                          F++M   GV P   T+  IL  C +   
Sbjct: 534 LHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVT 593

Query: 453 VKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           V+ G++     +K +   D  I   S +VD++++ G + +   + E+ P   D   W+++
Sbjct: 594 VELGKQIHAQIIKKELQSDAYIS--STLVDMYSKCGNMQDFQLIFEKAP-NRDFVTWNAM 650

Query: 512 LRGCVAHGDKGLGRKVAERM 531
           + G   HG      K+ E M
Sbjct: 651 VCGYAQHGLGEEALKIFEYM 670


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 273/545 (50%), Gaps = 71/545 (13%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
           F   A++  + KL   E S ++FN M + N  SWN +I+GF   DL    +   +   ++
Sbjct: 207 FVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAF--DLFLRMM 264

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGYANCGKMN 188
             G+  D+     +    G   D N A +V    L +  + +    +ALI   + CG + 
Sbjct: 265 GEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQ 324

Query: 189 DARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +AR +F+    T   +  WN+MISGY+ +  + +AL LF KM +N +  D  T  SV +A
Sbjct: 325 EARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNA 384

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            ++L  L  GK+VH  A K G                              L+V    + 
Sbjct: 385 IAALKCLSLGKKVHARAIKSG------------------------------LEVNYVSIS 414

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +   Y+ CG +ED + +F  M ++ LISW S++   SQ     +A+++F NM    + 
Sbjct: 415 NAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIA 474

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            ++F+ +SV+ +CAN+  LE G+QV   +  +GLD D+ I ++LVD Y KCG        
Sbjct: 475 PNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKV 534

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     DAL LF  M   GV+P  +TF  +L AC H GLV
Sbjct: 535 FNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLV 594

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG ++F  MK  Y + PE+EHY+C+VDL +R G LN+A+  I +MP E +  +W ++L 
Sbjct: 595 EEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLG 654

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  HG+  LG   A++++    EN+  Y+ LS+ +  SG ++    +R +M+E+ V K 
Sbjct: 655 ACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKE 714

Query: 574 PGCSW 578
           PGCSW
Sbjct: 715 PGCSW 719



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 156/590 (26%), Positives = 262/590 (44%), Gaps = 108/590 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALL 62
           +I  L  LL+ C     +   K +H   LK    N  +L + N +   Y +C +   A  
Sbjct: 67  QIQPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACR 126

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAA 120
           LFD+M +RN FSW  +I G  + G      + F  M  +  F      SG  +    L +
Sbjct: 127 LFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDS 186

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           +E G  +H+ I++ G    + + ++L+N+Y K  +   + +V N M              
Sbjct: 187 IELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM-------------- 232

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
                            T+ + V WN+MI+G+ SN+   +A  LF +M   GV  DA T 
Sbjct: 233 -----------------TEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTF 275

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
             V  A   L  +   K+V G+A ++GV  + +V +AL+D  SK                
Sbjct: 276 IGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSK---------------- 319

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRT--MPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                          CG +++A+ IF +  +  +    WN+MI G  ++G   +AL+LF 
Sbjct: 320 ---------------CGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFA 364

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKC 417
            M + D+ +D ++  SV +A A +  L LG++V AR    GL+ + + IS ++ + Y KC
Sbjct: 365 KMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKC 424

Query: 418 GY---------------------------------DALALFNEMRNTGVKPTIITFTAIL 444
           G                                   A+ +F+ MR  G+ P   TF+++L
Sbjct: 425 GSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVL 484

Query: 445 SACDHCGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
            +C +  L++ GQ+    + K    +D  IE  S +VD++A+ GCL +A  +  ++   A
Sbjct: 485 VSCANLCLLEYGQQVHGIICKVGLDMDKCIE--SALVDMYAKCGCLGDAKKVFNRIS-NA 541

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATS 552
           D   W++I+ G   HG      ++  RM++L  E NA  +  L  +FA S
Sbjct: 542 DTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTF--LCVLFACS 589



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 38/285 (13%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +GK++H   +K G+  + + I+N +   Y +CG+  D   +F+ M  R+  SW +++ 
Sbjct: 391 LSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVT 450

Query: 81  GFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
            + +    +K++++F+ M  +    N F+++ ++   + A+L  LEYG+Q+H  I   GL
Sbjct: 451 AYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVL--VSCANLCLLEYGQQVHGIICKVGL 508

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D D  + S+LV++Y KCG    A +V N +   D    +A+I+G+A  G ++D       
Sbjct: 509 DMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD------- 561

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                                   AL LF +M + GV  +A T   VL ACS  G +E G
Sbjct: 562 ------------------------ALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEG 597

Query: 257 KQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            Q      K  G++ ++   + ++D  S+ G  +DA +  S + V
Sbjct: 598 LQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPV 642


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 186/638 (29%), Positives = 310/638 (48%), Gaps = 69/638 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   L+ C+ H  +  GKQ+H    K G L S   I N L+ MY +CG   DA  +FD  
Sbjct: 69  LVSALKFCSDHLFLSQGKQIHCLVSKSG-LGSNNFIQNSLINMYGKCGLLVDAKSIFDVC 127

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
           PR +  S+N MI G++K G  + + +LF+ MP K   S+  +I GF++ +    A+E  K
Sbjct: 128 PRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFK 187

Query: 126 QIHS-----------------------------HILVNGLDFDS--VLGSSLVNLYGKCG 154
           Q+ +                             H LV  + F+   ++ ++L+ +Y  C 
Sbjct: 188 QMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCS 247

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
               A  + + M E +    + +++GY+  G ++ AR VF+R  +   V W ++I GY+ 
Sbjct: 248 SLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVR 307

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
                EAL+++  M   G   +   +  ++S C     +  G+Q+     K+G      +
Sbjct: 308 VERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFI 367

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            S ++  Y+  G  ++AC  F      +    N +I  Y     I+ A  +F  MP + +
Sbjct: 368 QSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDV 427

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
            SW++MI G +QN  P  AL+LF  M    ++ ++ ++ SV+SA A   +L+ G      
Sbjct: 428 FSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEY 487

Query: 395 VTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTG-------------------- 432
           V    +     +S +++D Y KCG   +AL +F E+R                       
Sbjct: 488 VHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHAN 547

Query: 433 -------------VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
                        +K   ITF  +L+AC H GLV+ G++ F +MK ++ IDP+I+HY CM
Sbjct: 548 LSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCM 607

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VDL  RAG L EA  +I  MP +ADV +W ++L  C  HG+  +G + AE +  L+P + 
Sbjct: 608 VDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAACRTHGNVDVGERAAENLARLEPSHG 667

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            + + LS+++A +G+WE + L+R  M+   + +LPG S
Sbjct: 668 ASRVLLSNMYADAGKWEDAFLVRRAMQSHRMQRLPGYS 705



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/501 (24%), Positives = 223/501 (44%), Gaps = 68/501 (13%)

Query: 94  LFNVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
           L N    +  F++ +++    K  +D   L  GKQIH  +  +GL  ++ + +SL+N+YG
Sbjct: 53  LLNPKTGQRHFNYELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYG 112

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           KCG    A  + ++    D    + +ISGY   G+++ A  +FD       V + +MI G
Sbjct: 113 KCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMG 172

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           +  N    +A+ LF +MR  GV+ +  T+A+++SA S  G +   + +HG   K+   + 
Sbjct: 173 FSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEF 232

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
           V+V++ LL  Y       +A  LF E+   + +  N M+  YS  G ++ A+ +F  +PN
Sbjct: 233 VLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPN 292

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           K L++W ++I G  +     EAL ++ +M       +   +  +IS C    ++  G+Q+
Sbjct: 293 KDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQL 352

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCGY-------------------------------- 419
            + V  +G D    I ++++  Y  CG                                 
Sbjct: 353 LSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMI 412

Query: 420 -DALALFNEMRN-------------------------------TGVKPTIITFTAILSAC 447
             A+ LFNEM                                 +G+KP  +T  ++LSA 
Sbjct: 413 DRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAI 472

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD-VG 506
              G +KEG +W         I       + ++D++A+ G +N A+ +  ++  +A  V 
Sbjct: 473 ATSGTLKEG-RWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVS 531

Query: 507 MWSSILRGCVAHGDKGLGRKV 527
            W++I+ G   HG   L  K+
Sbjct: 532 PWNAIICGLAVHGHANLSLKI 552


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 187/635 (29%), Positives = 314/635 (49%), Gaps = 78/635 (12%)

Query: 3   TRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           TR D+  L  +L++C    S   G   H      G   S + I N L+ MY RCG+  +A
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLEEA 216

Query: 61  LLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLIS 111
            ++FDE+ +R   +  SWN+++   +K  +   +L LF+ M         N+ S  + I 
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 276

Query: 112 GFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
               A   L A+   K++H + + NG   D  +G++L++ Y KCG   +A +V NMM+  
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLF 225
           D    +A+++GY+  G    A  +F      +     V W ++I+GY       EAL LF
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M  +G L +  T+ SVLSAC+SLG    G ++H ++ K          + LL   +  
Sbjct: 397 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK----------NCLLTLDNDF 446

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVG 343
           G   +           D ++ N +I +YS C   + A+ IF  +P   +++++W  MI G
Sbjct: 447 GGEDE-----------DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 495

Query: 344 LSQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL- 400
            +Q G   +AL LF  M      +  + ++++ ++ ACA+++++ +G+Q+ A V      
Sbjct: 496 HAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRY 555

Query: 401 -DSDQIISTSLVDFYCKCG---------------------------------YDALALFN 426
             S   ++  L+D Y KCG                                  +AL +F+
Sbjct: 556 ESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD 615

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +MR  G  P  ITF  +L AC HCG+V +G  +FD+M   Y + P  EHY+C +DL AR+
Sbjct: 616 KMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARS 675

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G L++A   ++ MP E    +W ++L  C  H +  L      +++E++ EN  +Y  +S
Sbjct: 676 GRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLIS 735

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADG 581
           +I+AT+G W+  + IR +M++  + K PGCSW  G
Sbjct: 736 NIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQG 770



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 142/611 (23%), Positives = 264/611 (43%), Gaps = 113/611 (18%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-------TLP----------- 42
           +D    + A LL+ C + +++H   Q+H   +  G+L+        +LP           
Sbjct: 40  VDVYPSHFASLLKECKSANTVH---QIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPR 96

Query: 43  -IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK 101
            +   ++  Y+ CG    ALL+ + +       WN +I   +K G  + ++ +   M + 
Sbjct: 97  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 156

Query: 102 NDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 159
                +  +    KA  +L +   G   H  I  NG + +  + ++LV +Y +CG    A
Sbjct: 157 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 160 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
           + + + + +                           R  D   + WNS++S ++ ++   
Sbjct: 217 SMIFDEITQ---------------------------RGID-DVISWNSIVSAHVKSSNAW 248

Query: 220 EALLLFHKM------RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
            AL LF KM      +      D  ++ ++L AC SL  +   K+VHG+A + G   DV 
Sbjct: 249 TALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVF 308

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
           V +AL+D Y+K G+  +A K+F+ ++  D +  N M+  YS  G  E A  +F+ M  ++
Sbjct: 309 VGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKEN 368

Query: 334 L----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           +    ++W ++I G SQ G   EAL+LF  M       +  ++ SV+SACA++ +   G 
Sbjct: 369 IPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGT 428

Query: 390 QVFARV----------TIIGLDSDQIISTSLVDFYCKC---------------------- 417
           ++ A               G D D ++  +L+D Y KC                      
Sbjct: 429 EIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVT 488

Query: 418 -------------GYDALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                          DAL LF EM     GV P   T + IL AC H   ++ G++   A
Sbjct: 489 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-IHA 547

Query: 463 MKWQYHIDPEIEHY--SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
              ++H      ++  +C++D++++ G ++ A ++ + M  ++ +  W+S++ G   HG 
Sbjct: 548 YVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGR 606

Query: 521 KGLGRKVAERM 531
                 + ++M
Sbjct: 607 GSEALDIFDKM 617


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 178/597 (29%), Positives = 286/597 (47%), Gaps = 101/597 (16%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +GKQ+H   ++ G  +  + +AN  + MY++ G+   A  +F +M   +  SWN +I 
Sbjct: 313 LELGKQIHGAVVRFG-WDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVIS 371

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE----YGKQIHSHILVNGL 136
           G  + G +E SL+LF  + +         I+   +A  ++LE     G+Q+H+  L  G+
Sbjct: 372 GCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRA-CSSLEESYCVGRQVHTCALKAGI 430

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
             DS                               F  +ALI  Y+  GKM +A  +F  
Sbjct: 431 VLDS-------------------------------FVSTALIDVYSKGGKMEEAELLFHN 459

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                   WN+M+ G+  ++   EAL LF  M   G   D  T A+   A   L  L+ G
Sbjct: 460 QDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQG 519

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           KQ+H    K+    D+ V S +LD Y K                               C
Sbjct: 520 KQIHAVVIKMRFHYDLFVISGILDMYLK-------------------------------C 548

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G ++ A+ +F  +P+   ++W ++I G  +NG   +AL  +  M    ++ D+++ A+++
Sbjct: 549 GEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLV 608

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
            AC+ +++LE G+Q+ A +  +    D  + TSLVD Y KCG                  
Sbjct: 609 KACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVA 668

Query: 419 ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                           +AL  FNEM++ GV P  +TF  +LSAC H GL  +  K FD+M
Sbjct: 669 LWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSM 728

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
           +  Y ++PEIEHYSC+VD  +RAG + EA  ++  MPFEA   M+ ++L  C   GDK  
Sbjct: 729 QKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKET 788

Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           G +VAE++  +DP ++ AY+ LS+I+A + +WE +   R++M+  +V K PG SW D
Sbjct: 789 GERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWID 845



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 142/596 (23%), Positives = 260/596 (43%), Gaps = 121/596 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L + C  + S    + L  + +K G L   + +A  L+ +Y +     +A +LFD M
Sbjct: 125 LSPLFKLCLLYGSPSASEALQGYAVKIG-LQWDVFVAGALVNIYAKFQRIREARVLFDRM 183

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADL--AAL 121
           P R+   WN M++ ++++G  ++ L LF+   +     +  S   ++ G  K  +    L
Sbjct: 184 PVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFEREL 243

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD-FNSANQVLNMMKEP----------- 169
           E  +   + + V   D D  + +  ++ Y + G+ + + +   +M+K             
Sbjct: 244 EQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVI 303

Query: 170 -------------------------DDF--CLSALISGYANCGKMNDARRVFDRTTDTSS 202
                                    D F    ++ I+ Y   G +N ARR+F +  +   
Sbjct: 304 LSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDL 363

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH----GKQ 258
           + WN++ISG   +  +  +L LF  + R+G+L D  T+ SVL ACSS   LE     G+Q
Sbjct: 364 ISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSS---LEESYCVGRQ 420

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           VH  A K G++ D  V++AL+D YSK                                G+
Sbjct: 421 VHTCALKAGIVLDSFVSTALIDVYSK-------------------------------GGK 449

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +E+A+ +F       L SWN+M+ G + + +  EAL LF  M++   + D+ + A+   A
Sbjct: 450 MEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKA 509

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------- 418
              +  L+ G+Q+ A V  +    D  + + ++D Y KCG                    
Sbjct: 510 AGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAW 569

Query: 419 -------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMK 464
                          AL  +++MR  GV+P   TF  ++ AC     +++G++   + MK
Sbjct: 570 TTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMK 629

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
                DP +   + +VD++A+ G + +A  L  +M   + V +W++++ G   HG+
Sbjct: 630 LNCAFDPFV--MTSLVDMYAKCGNIEDAYGLFRRMNTRS-VALWNAMIVGLAQHGN 682



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 140/590 (23%), Positives = 242/590 (41%), Gaps = 129/590 (21%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIE 80
           +GK+ H   +  G LN    + N L+ MY +CG+   A  LFD  P+  R+  ++NA++ 
Sbjct: 31  LGKRTHAVIVTSG-LNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILA 89

Query: 81  GFMKLGH------KEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVN 134
            +   G         ++  +F ++ Q    +    +S   K     L YG    S  L  
Sbjct: 90  AYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKL---CLLYGSPSASEALQG 146

Query: 135 -----GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
                GL +D  +  +LVN+Y K      A  + + M   D    + ++  Y   G  ++
Sbjct: 147 YAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDE 206

Query: 190 A----------------------------RRVFDRT---------------TDTSSVMWN 206
                                        + VF+R                 D+   +WN
Sbjct: 207 VLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWN 266

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
             +S Y+   E  EA+  F  M ++ V  D+ T   +LS  +SL  LE GKQ+HG   + 
Sbjct: 267 KTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRF 326

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G    V VA++ ++ Y K G  + A ++F ++K  D                        
Sbjct: 327 GWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVD------------------------ 362

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI-SSL 385
                  LISWN++I G +++G    +L LF ++ +  L  D+F++ SV+ AC+++  S 
Sbjct: 363 -------LISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESY 415

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------------- 418
            +G QV       G+  D  +ST+L+D Y K G                           
Sbjct: 416 CVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGF 475

Query: 419 ------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDP 471
                  +AL LF+ M   G K   ITF     A      +++G++     +K ++H D 
Sbjct: 476 TVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDL 535

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
            +   S ++D++ + G +  A  +  Q+P   DV  W++++ GCV +G++
Sbjct: 536 FV--ISGILDMYLKCGEMKSARKVFNQIPSPDDVA-WTTVISGCVENGEE 582



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 168/394 (42%), Gaps = 79/394 (20%)

Query: 106 WNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 165
           +++L    A +DL     GK+ H+ I+ +GL+ D  + ++L+ +Y KCG   SA ++ ++
Sbjct: 17  FSILRHAIADSDLI---LGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDI 73

Query: 166 MKEPDD--FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
             + D      +A+++ YA+ G+++D  +                           EA  
Sbjct: 74  TPQSDRDLVTYNAILAAYAHTGELHDVEKTH-------------------------EAFH 108

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           +F  +R++ +L    TL+ +   C   G     + + G+A K+G+  DV VA AL++ Y+
Sbjct: 109 IFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYA 168

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF---------------RT 328
           K     +A  LF  + V D +L N M+  Y   G  ++   +F               RT
Sbjct: 169 KFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRT 228

Query: 329 M----------------------------PNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
           +                             +  +  WN  +    Q G   EA+D F +M
Sbjct: 229 ILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDM 288

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD 420
            K  +  D  +   ++S  A+++ LELG+Q+   V   G D    ++ S ++ Y K G  
Sbjct: 289 IKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSV 348

Query: 421 ALA--LFNEMRNTGVKPTIITFTAILSACDHCGL 452
             A  +F +M+       +I++  ++S C   GL
Sbjct: 349 NYARRMFGQMKEV----DLISWNTVISGCARSGL 378



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 14/239 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTDALLLFD 65
            A L+++C+   ++  GKQ+H + +K   LN      +   L+ MY +CGN  DA  LF 
Sbjct: 604 FATLVKACSLLTALEQGKQIHANIMK---LNCAFDPFVMTSLVDMYAKCGNIEDAYGLFR 660

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAAL 121
            M  R+   WNAMI G  + G+ E++L  FN M  +    +  ++  ++S  + + L + 
Sbjct: 661 RMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSD 720

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
            Y K   S     G++ +    S LV+   + G    A +V++ M  E        L++ 
Sbjct: 721 AY-KNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNA 779

Query: 181 YANCGKMNDARRVFDR--TTDTSSVMWNSMISG-YISNNEDTEALLLFHKMRRNGVLED 236
               G      RV ++  T D S      ++S  Y + N+   A+   + M+R  V ++
Sbjct: 780 CRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKE 838



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 51/188 (27%)

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT----II 438
           S L LG++  A +   GL+ D+ ++ +L+  Y KCG    +LF+  +   + P     ++
Sbjct: 27  SDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCG----SLFSARKLFDITPQSDRDLV 82

Query: 439 TFTAILSACDHCGLVKEGQKWFDA------------MKWQYHIDP--------------- 471
           T+ AIL+A  H G + + +K  +A            +  ++ + P               
Sbjct: 83  TYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASE 142

Query: 472 EIEHYS-------------CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV-- 516
            ++ Y+              +V+++A+   + EA  L ++MP   DV +W+ +++  V  
Sbjct: 143 ALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-DVVLWNVMMKAYVEM 201

Query: 517 AHGDKGLG 524
             GD+ LG
Sbjct: 202 GAGDEVLG 209


>gi|356532255|ref|XP_003534689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 948

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 186/576 (32%), Positives = 309/576 (53%), Gaps = 15/576 (2%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +++C    S     QLH H +K   L +   I N L+ MY++CG  T A  +F  +   +
Sbjct: 149 MKACGCLASTRFALQLHAHVIKLH-LGAQTCIQNSLVDMYIKCGAITLAETVFLNIESPS 207

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL---EYGKQIH 128
            F WN+MI G+ +L    ++L +F  MP+ +  SWN LIS F++          Y +  +
Sbjct: 208 LFCWNSMIYGYSQLYGPYEALHVFTRMPKHDHVSWNTLISVFSQYGHGIRCLSTYVEMCN 267

Query: 129 SHILVNGLDFDSVLGS--SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
                N + + SVL +  S+ +L  K G    A ++L M    D F  S LI  YA CG 
Sbjct: 268 LGFKPNFMTYGSVLSACASISDL--KWGAHLHA-RILRMEHSLDAFLGSGLIDMYAKCGC 324

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  ARRVF+   + + V W  +ISG        +AL LF++MR+  V+ D  TL ++L  
Sbjct: 325 LALARRVFNSLGEQNQVSWTCLISGVAQFGLGDDALALFNQMRQASVVLDEFTLVTILGV 384

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS   +   G+ +HG+A K G+   V V +A++  Y++ G    A   F  + + DTI  
Sbjct: 385 CSGQNYAATGELLHGYAIKNGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISW 444

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
             MIT +S  G I+ A+  F   P +++I+WNSM+    Q+G   E + L+  M    ++
Sbjct: 445 TAMITAFSQNGDIDRARQCFDMTPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVK 504

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALAL 424
            D  + A+ I ACA++++++LG QV + VT  GL SD  ++ S+V  Y +CG   +A  +
Sbjct: 505 PDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEARKV 564

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F+ +    VK  +I++ A+++A    GL  +  + ++ M         I + + + DL  
Sbjct: 565 FDSIH---VK-NLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHISYVAVLSDLLG 620

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544
           RAG L++A NLI+ MPF+ +  +W ++L  C  H D  L +  A++++EL+ E++  Y+ 
Sbjct: 621 RAGLLDQAKNLIDGMPFKPNATVWGALLGACRIHHDSILAKTAAKKLMELNVEDSGGYVL 680

Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           L++I+  SGE E  + +R +M+ K + K PGCSW +
Sbjct: 681 LANIYTESGELENVADMRKLMKVKGIRKSPGCSWIE 716



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 206/487 (42%), Gaps = 46/487 (9%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            +++H+ ++++GLD    L ++L+++Y  CG  + A  V       + F  + ++  + +
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFCVFREANHANIFTWNTMLHAFFD 82

Query: 184 CGKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE----DA 237
            G+M +A  +FD        SV W +MISGY  N     ++  F  M R+   +    D 
Sbjct: 83  SGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDP 142

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            +    + AC  L       Q+H H  K+ +     + ++L+D Y K G  + A  +F  
Sbjct: 143 FSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFLN 202

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           ++       N+MI  YS      +A H+F  MP    +SWN++I   SQ G  I  L  +
Sbjct: 203 IESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPKHDHVSWNTLISVFSQYGHGIRCLSTY 262

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M  L  + +  +  SV+SACA+IS L+ G  + AR+  +    D  + + L+D Y KC
Sbjct: 263 VEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKC 322

Query: 418 GY---------------------------------DALALFNEMRNTGVKPTIITFTAIL 444
           G                                  DALALFN+MR   V     T   IL
Sbjct: 323 GCLALARRVFNSLGEQNQVSWTCLISGVAQFGLGDDALALFNQMRQASVVLDEFTLVTIL 382

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
             C        G+        +  +D  +   + ++ ++AR G   +A      MP   D
Sbjct: 383 GVCSGQNYAATGE-LLHGYAIKNGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLR-D 440

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKSSLIRD 563
              W++++     +GD    R+      ++ PE N   +  + S +   G  E+   +  
Sbjct: 441 TISWTAMITAFSQNGDIDRARQC----FDMTPERNVITWNSMLSTYIQHGFSEEGMKLYV 496

Query: 564 IMREKHV 570
           +MR K V
Sbjct: 497 LMRSKAV 503


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 187/635 (29%), Positives = 315/635 (49%), Gaps = 78/635 (12%)

Query: 3   TRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           TR D+  L  +L++C    S   G   H      G   S + I N L+ MY RCG+  +A
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLEEA 209

Query: 61  LLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGF 113
            ++FDE+ +R   +  SWN+++   +K  +   +L LF+ M     +K     + +IS  
Sbjct: 210 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 269

Query: 114 ----AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
               A   L A+   K++H + + NG   D  +G++L++ Y KCG   +A +V NMM+  
Sbjct: 270 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLF 225
           D    +A+++GY+  G    A  +F      +     V W ++I+GY       EAL LF
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M  +G L +  T+ SVLSAC+SLG    G ++H ++ K          + LL   +  
Sbjct: 390 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK----------NCLLTLDNDF 439

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVG 343
           G   +           D ++ N +I +YS C   + A+ IF  +P   +++++W  MI G
Sbjct: 440 GGEDE-----------DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 488

Query: 344 LSQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL- 400
            +Q G   +AL LF  M      +  + ++++ ++ ACA+++++ +G+Q+ A V      
Sbjct: 489 HAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRY 548

Query: 401 -DSDQIISTSLVDFYCKCG---------------------------------YDALALFN 426
             S   ++  L+D Y KCG                                  +AL +F+
Sbjct: 549 ESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD 608

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +MR  G  P  ITF  +L AC HCG+V +G  +FD+M   Y + P  EHY+C +DL AR+
Sbjct: 609 KMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARS 668

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G L++A   ++ MP E    +W ++L  C  H +  L      +++E++ EN  +Y  +S
Sbjct: 669 GRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLIS 728

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADG 581
           +I+AT+G W+  + IR +M++  + K PGCSW  G
Sbjct: 729 NIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQG 763



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 142/611 (23%), Positives = 264/611 (43%), Gaps = 113/611 (18%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-------TLP----------- 42
           +D    + A LL+ C + +++H   Q+H   +  G+L+        +LP           
Sbjct: 33  VDVYPSHFASLLKECKSANTVH---QIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPR 89

Query: 43  -IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK 101
            +   ++  Y+ CG    ALL+ + +       WN +I   +K G  + ++ +   M + 
Sbjct: 90  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 149

Query: 102 NDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 159
                +  +    KA  +L +   G   H  I  NG + +  + ++LV +Y +CG    A
Sbjct: 150 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209

Query: 160 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
           + + + + +                       R  D       + WNS++S ++ ++   
Sbjct: 210 SMIFDEITQ-----------------------RGIDDV-----ISWNSIVSAHVKSSNAW 241

Query: 220 EALLLFHKM------RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
            AL LF KM      +      D  ++ ++L AC SL  +   K+VHG+A + G   DV 
Sbjct: 242 TALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVF 301

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
           V +AL+D Y+K G+  +A K+F+ ++  D +  N M+  YS  G  E A  +F+ M  ++
Sbjct: 302 VGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKEN 361

Query: 334 L----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           +    ++W ++I G SQ G   EAL+LF  M       +  ++ SV+SACA++ +   G 
Sbjct: 362 IPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGT 421

Query: 390 QVFARV----------TIIGLDSDQIISTSLVDFYCKC---------------------- 417
           ++ A               G D D ++  +L+D Y KC                      
Sbjct: 422 EIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVT 481

Query: 418 -------------GYDALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                          DAL LF EM     GV P   T + IL AC H   ++ G++   A
Sbjct: 482 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-IHA 540

Query: 463 MKWQYHIDPEIEHY--SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
              ++H      ++  +C++D++++ G ++ A ++ + M  ++ +  W+S++ G   HG 
Sbjct: 541 YVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGR 599

Query: 521 KGLGRKVAERM 531
                 + ++M
Sbjct: 600 GSEALDIFDKM 610


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 183/612 (29%), Positives = 302/612 (49%), Gaps = 113/612 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    S+ +G+Q+H   +K   +++ L +AN +L MY + G    A  LF  +P +
Sbjct: 434 VLGACINLDSLDIGRQVHCITIKNS-MDADLFVANAMLDMYSKLGAIDVAKALFSLIPGK 492

Query: 71  NCFSWNAMIEGFMKLGHKE---------KSLQLFNVMPQKNDFSWNMLISGFAKADLAAL 121
           +  SWNA+I G   L H E         K ++ + + P +  F+  +     A +++ A 
Sbjct: 493 DSVSWNALIVG---LAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAI----NACSNIRAT 545

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           E GKQIH   +   +  +  +GSSL++LY K GD  S+                      
Sbjct: 546 ETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESS---------------------- 583

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
                    R+V      +S V  N++I+G + NN + EA+ LF ++ ++G      T A
Sbjct: 584 ---------RKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFA 634

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           S+LS C+       GKQVH +  K          SALL+                     
Sbjct: 635 SILSGCTGPVSSVIGKQVHSYTLK----------SALLNQ-------------------- 664

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNM 360
           DT L  +++ +Y  C  +EDA  +   +P+ K+L+ W + I G +QNG   ++L +F  M
Sbjct: 665 DTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRM 724

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
              D+R D+ + ASV+ AC+ I++L  G+++   +   G  S +  +++L+D Y KCG  
Sbjct: 725 RSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCGDV 784

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +AL LF +M+ + +KP  +T   +L A
Sbjct: 785 ISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVLIA 844

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL+ EG+  FD+M   Y I P ++HY+C++DL  R G L EA  +I+Q+PF AD  
Sbjct: 845 CSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLPFRADGV 904

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W++ L  C  H D+  G+  A++++E++P+ +  Y+ LSS+ A +G W ++ + R+ MR
Sbjct: 905 IWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAKVAREAMR 964

Query: 567 EKHVGKLPGCSW 578
           EK V K PGCSW
Sbjct: 965 EKGVMKFPGCSW 976



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 152/613 (24%), Positives = 255/613 (41%), Gaps = 164/613 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+   ++  G+Q+H   LK G  +S    A  L+ MY +C    DA  +FD +
Sbjct: 163 LAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAG-LVDMYAKCVEVKDARRVFDGI 221

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
              +   W +MI G+ ++G  +++L LF+ M +                           
Sbjct: 222 ACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDAR 281

Query: 101 --------KNDFSWNMLISGF---------------------------------AKADLA 119
                    +  +WN +IS +                                 A A + 
Sbjct: 282 TLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMT 341

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A + G+QIH+  + +GLD +  +GSSL+NLY K G                  C+S    
Sbjct: 342 AFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHG------------------CIS---- 379

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                    DA++VFD +T+ + VMWN+M+ G++ N+   E + +F  MRR  +  D  T
Sbjct: 380 ---------DAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFT 430

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             SVL AC +L  L+ G+QVH    K  +  D+ VA+A+LD YSK G             
Sbjct: 431 FVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGA------------ 478

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                              I+ AK +F  +P K  +SWN++IVGL+ N    EA+ +   
Sbjct: 479 -------------------IDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKR 519

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M    +  D+ S A+ I+AC+NI + E G+Q+        + S+  + +SL+D Y K G 
Sbjct: 520 MKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGD 579

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+ LF ++   G KP+  TF +ILS 
Sbjct: 580 VESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSG 639

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C        G++          ++ +      +V ++ +   L +A  L+ ++P   ++ 
Sbjct: 640 CTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLV 699

Query: 507 MWSSILRGCVAHG 519
            W++ + G   +G
Sbjct: 700 EWTATISGYAQNG 712



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/558 (22%), Positives = 252/558 (45%), Gaps = 106/558 (18%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M TR  + A +L +  +  +   G+Q+H   +K G L++ + + + L+ +Y++ G  +DA
Sbjct: 324 MPTRSTF-ASMLSAAASMTAFDEGQQIHAAAVKHG-LDANVFVGSSLINLYVKHGCISDA 381

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKA 116
             +FD    +N   WNAM+ GF++   +E+++Q+F  M     + +DF++  ++   A  
Sbjct: 382 KKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLG--ACI 439

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           +L +L+ G+Q+H   + N +D D  + ++++++Y K G  + A  + +++   D      
Sbjct: 440 NLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKD------ 493

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
                                    SV WN++I G   N E+ EA+ +  +M+  G+  D
Sbjct: 494 -------------------------SVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPD 528

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             + A+ ++ACS++   E GKQ+H  + K  V  +  V S+L+D YSK            
Sbjct: 529 EVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSK------------ 576

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                               G +E ++ +   +   S++  N++I GL QN    EA++L
Sbjct: 577 -------------------FGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIEL 617

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYC 415
           F  + K   +   F+ AS++S C    S  +G+QV +       L+ D  +  SLV  Y 
Sbjct: 618 FQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYL 677

Query: 416 KC---------------------------GY-------DALALFNEMRNTGVKPTIITFT 441
           KC                           GY        +L +F  MR+  V+    TF 
Sbjct: 678 KCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFA 737

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           ++L AC     + +G++    +     +  E    S ++D++++ G +  +  + +++  
Sbjct: 738 SVLKACSEIAALTDGKEIHGLIIKSGFVSYETA-ASALMDMYSKCGDVISSFEIFKELKN 796

Query: 502 EADVGMWSSILRGCVAHG 519
           + ++  W+S++ G   +G
Sbjct: 797 KQNIMPWNSMIVGFAKNG 814



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 119/580 (20%), Positives = 215/580 (37%), Gaps = 184/580 (31%)

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDF------------------------------ 156
           +H+ +L  GL     LG +LV+LYG+ G                                
Sbjct: 78  LHARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHARS 137

Query: 157 NSANQVLNMMKE--------PDDFCLSALISGYANCG----------------------- 185
            S   VL+  +         PD F L+ ++S  +  G                       
Sbjct: 138 GSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFC 197

Query: 186 ------------KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                       ++ DARRVFD      ++ W SMI+GY       +AL LF +M + G 
Sbjct: 198 QAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGS 257

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
             D  T  +++S  +S+G L   + +     K   +   +  +A++ +YS+ G+ S+   
Sbjct: 258 APDQVTYVTIISTLASMGRLSDARTL----LKRIQMPSTVAWNAVISSYSQSGLESEVFG 313

Query: 294 LFSELK----------------------VYD-----------------TILLNTMITVYS 314
           L+ ++K                       +D                   + +++I +Y 
Sbjct: 314 LYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYV 373

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
             G I DAK +F     K+++ WN+M+ G  QN    E + +F  M + DL  D F+  S
Sbjct: 374 KHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVS 433

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------- 419
           V+ AC N+ SL++G QV        +D+D  ++ +++D Y K G                
Sbjct: 434 VLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKD 493

Query: 420 ------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                             +A+ +   M+  G+ P  ++F   ++AC +    + G K   
Sbjct: 494 SVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETG-KQIH 552

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCL-------------------------------N 490
               +Y++       S ++DL+++ G +                               +
Sbjct: 553 CASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNRED 612

Query: 491 EAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKV 527
           EA+ L +Q+    F+     ++SIL GC       +G++V
Sbjct: 613 EAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQV 652



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 150/336 (44%), Gaps = 41/336 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L  C    S  +GKQ+H + LK  +LN    +   L+ +Y++C    DA  L  E+
Sbjct: 633 FASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEV 692

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYG 124
           P  +N   W A I G+ + G+ ++SL +F  M   +  S     +   KA  ++AAL  G
Sbjct: 693 PDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDG 752

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K+IH  I+ +G        S+L+++Y KCGD  S+ ++   +K   +             
Sbjct: 753 KEIHGLIIKSGFVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNI------------ 800

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                             + WNSMI G+  N    EALLLF KM+ + +  D  TL  VL
Sbjct: 801 ------------------MPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVL 842

Query: 245 SACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELK---- 299
            ACS  G +  G+ +     +V G++  V   + L+D   + G   +A ++  +L     
Sbjct: 843 IACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLPFRAD 902

Query: 300 --VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
             ++ T L    +      G++  AK +    P +S
Sbjct: 903 GVIWATFLAACQMHKDEERGKVA-AKKLVEMEPQRS 937


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 266/510 (52%), Gaps = 68/510 (13%)

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D+ L + L++LY K G+ + A  + + M   D F  +A++S Y+  G + D R VFD+ +
Sbjct: 57  DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS 116

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
              +V +N++I+G+  N   ++AL  F +M+  G      T  SVL ACS L  ++ GKQ
Sbjct: 117 VHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQ 176

Query: 259 VHGHACKVGVIDDVIVASALLDTYSK-------------------------------RGM 287
           +HG      + + V V +AL + Y+K                                G 
Sbjct: 177 IHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQ 236

Query: 288 PSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           P    KLF E++    + D + ++ +++ Y  CG I++A   FR +  K  + W +M+VG
Sbjct: 237 PETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVG 296

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
            +QNG   +AL LF  M   ++R D F+++SV+S+CA ++SL  G+ V  +  I G+D D
Sbjct: 297 CAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHD 356

Query: 404 QIISTSLVDFYCKCG---------------------------------YDALALFNEMRN 430
            ++S++LVD Y KCG                                  +ALAL+ EM +
Sbjct: 357 LLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLH 416

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
             +KP  ITF  +LSAC H GLV+ GQ +F ++   + ++P  +HYSCM++L  RAG ++
Sbjct: 417 ENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMD 476

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           +AV+LI+ M FE +  +WS++L  C  + D   G   A  + ELDP NA  YI LS+I+A
Sbjct: 477 KAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYA 536

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             G W+  + +R +M+   + K    SW +
Sbjct: 537 ACGRWKDVAAVRSLMKNNKIKKFAAYSWIE 566



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/532 (26%), Positives = 233/532 (43%), Gaps = 104/532 (19%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
            RLL  C   + +   K+L  H        +   + NRLL +Y + GN +DA  LFD+M 
Sbjct: 26  TRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMS 85

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--------------- 113
           RR+ FSWNAM+  + K G+ E    +F+ M   +  S+N +I+GF               
Sbjct: 86  RRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVR 145

Query: 114 ------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155
                             A + L  ++ GKQIH  I+   L     + ++L N+Y KCG 
Sbjct: 146 MQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGA 205

Query: 156 FNSANQVLNMMKE-----------------------------------PDDFCLSALISG 180
            + A  + + M                                     PD   +S ++S 
Sbjct: 206 LDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSA 265

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y  CG +++A + F    +   V W +M+ G   N ++ +ALLLF +M    V  D  T+
Sbjct: 266 YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTI 325

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SV+S+C+ L  L  G+ VHG A   GV  D++V+SAL+D YSK G  +DA  +F  +  
Sbjct: 326 SSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLT 385

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + I  N+M                               I+G +QNG  +EAL L+  M
Sbjct: 386 RNVISWNSM-------------------------------ILGYAQNGKDLEALALYEEM 414

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGY 419
              +L+ D  +   V+SAC +   +E G+  F  ++ I G++      + +++   + GY
Sbjct: 415 LHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGY 474

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
              A+ + +++   +P  + ++ +LS C     V  G+    A +  + +DP
Sbjct: 475 MDKAV-DLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEM---AARHLFELDP 522



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 5/176 (2%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ ++ SC    S+  G+ +H   +  G+ +  L +++ L+ MY +CG   DA ++F  M
Sbjct: 325 ISSVVSSCARLASLCQGQAVHGKAVIFGV-DHDLLVSSALVDMYSKCGETADAWIVFKRM 383

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGK 125
             RN  SWN+MI G+ + G   ++L L+  M  +N    N+   G   A + A  +E G+
Sbjct: 384 LTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQ 443

Query: 126 -QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALIS 179
              +S   ++G++      S ++NL G+ G  + A  ++  M  EP+    S L+S
Sbjct: 444 GYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLS 499


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 189/641 (29%), Positives = 303/641 (47%), Gaps = 93/641 (14%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           FL+    ++ +   N  +    R GN  +A  +F +M  R+  SWNAMI  + + G   K
Sbjct: 40  FLETTTTSTAIFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSK 99

Query: 91  SLQLFNVMPQKNDFSWNMLISGFA--KADLA-------------ALEYGKQIHSHILVNG 135
           + Q+F+ MP +   S+N +I+     K DL              A+ Y   I   +    
Sbjct: 100 AWQVFDEMPVRATTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGR 159

Query: 136 LD-------------FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            D              D V  + L++ Y + G +N A +V   M   +    S+++ GY 
Sbjct: 160 FDEAECLYAETPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYC 219

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLA 241
             G++ DAR +FDR  + + + W +MI GY       +   LF +MR+ G V  +++TLA
Sbjct: 220 KMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLA 279

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            +  AC        G Q+HG   ++ +  D+ + ++L+  YSK G   +A  +F  +K  
Sbjct: 280 VMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYK 339

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D++  N++IT      +I +A  +F  MP K ++SW  MI G S  G   + ++LF  M 
Sbjct: 340 DSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMP 399

Query: 362 KLD---------------------------LRM----DKFSLASVISACANISSLELGEQ 390
           + D                           LR     + ++ +SV+SA A+++ L  G Q
Sbjct: 400 EKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQ 459

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKC--------------------------------- 417
           +  RV  + + +D  +  SLV  YCKC                                 
Sbjct: 460 IHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGF 519

Query: 418 GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
           G +A+ LF+ + +TG +P  +TF A+LSAC H G V  G K+F +MK+ Y I+P  +HY+
Sbjct: 520 GKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYA 579

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
           CMVDLF R+G L+EA NLI  MP E   G+W S+L     H    L    A+++IEL+P+
Sbjct: 580 CMVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPD 639

Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +A  Y+ LS +++  G+      I +I + K + K PG SW
Sbjct: 640 SATPYVVLSQLYSMVGKNSDCDRIMNIKKSKRIKKDPGSSW 680



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 145/334 (43%), Gaps = 39/334 (11%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R++   LA + ++C        G Q+H   L +  L   L + N L+ MY + G   +
Sbjct: 270 DVRVNSNTLAVMFRACRDFFRYREGSQIH-GLLSRMPLEFDLFLGNSLISMYSKLGYMGE 328

Query: 60  ALLLFDEMPRRNCFSWNAMI-------------------------------EGFMKLGHK 88
           A  +F  M  ++  SWN++I                               +GF   G  
Sbjct: 329 AKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEI 388

Query: 89  EKSLQLFNVMPQKNDFSWNMLISGFAK---ADLAALEYGKQIHSHILVNGLDFDSVLGSS 145
            K ++LF +MP+K+D +W  +IS F      + A   + K +   +  N   F SVL S+
Sbjct: 389 SKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVL-SA 447

Query: 146 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 205
             +L           +V+ M    D    ++L+S Y  CG  NDA ++F   ++ + V +
Sbjct: 448 TASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHAC 264
           N+MISG+  N    EA+ LF  +   G   +  T  ++LSAC  +G+++ G K       
Sbjct: 508 NTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKF 567

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
             G+       + ++D + + G+  +A  L S +
Sbjct: 568 SYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTM 601


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 180/610 (29%), Positives = 302/610 (49%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +  ++H G QLH H +K G +++ + +   LL +Y +C +   A   F   
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAG-MSADIILEGSLLDLYSKCADVETAHKFFLXT 423

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              N   WN M+  + +L +   S ++F  M  +    N F++  ++       L AL  
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILR--TCTSLGALYL 481

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH+H++  G   +  + S L+++Y K                               
Sbjct: 482 GEQIHTHVIKTGFQLNVYVCSVLIDMYAKY------------------------------ 511

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G++  A R+  R  +   V W +MI+GY+ ++  +EAL LF +M   G+  D    AS 
Sbjct: 512 -GQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASA 570

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +SAC+ +  L  G+Q+H  +   G   D+ + +AL                         
Sbjct: 571 ISACAGIRALRQGQQIHAQSYAAGFGADLSINNAL------------------------- 605

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                 I++Y+ CGRI++A   F  + +K+ ISWNS++ GL+Q+G   EAL +F  M + 
Sbjct: 606 ------ISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK------- 416
           +  ++ F+  S ISA A++++++ G+Q+ + V   G DS++ +S SL+  Y K       
Sbjct: 660 EAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDA 719

Query: 417 --------------------------CGYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                     CG +AL LF EM+  G+ P  +TF  +LSAC H 
Sbjct: 720 WREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHI 779

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLVKEG  +F++M   + + P+ EHY C+VDL  RAG L+ A+  I++MP  AD  +W +
Sbjct: 780 GLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRT 839

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  CV H +  +G + A  ++EL+PE++  Y+ +S+I+A S +W      R +M++  V
Sbjct: 840 LLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGV 899

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 900 KKEPGRSWIE 909



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 148/546 (27%), Positives = 239/546 (43%), Gaps = 105/546 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C T  S+    +LH    K G     L I + L+  Y R G+   A+ +FDE   R
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLI-DSLVDNYFRHGDQHGAVKVFDENSNR 122

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           + FSWN MI  F+      +   LF  M  +    N +++  ++      D+A   Y KQ
Sbjct: 123 SVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIA-FNYVKQ 181

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +HS     G D   ++ + L++LY K G   SA +V                    NC  
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVF-------------------NCIC 222

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           M D             V W +MISG   N  + EA+LLF  M  + +      L+SVLSA
Sbjct: 223 MKDI------------VTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSA 270

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            + +   E G+Q+H    K G   +  V + L+  YS+      + KL S          
Sbjct: 271 STKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSR------SRKLIS---------- 314

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                          A+ IF TM ++  +S+NS+I GL Q G    AL+LF  M +  L+
Sbjct: 315 ---------------AERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLK 359

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  ++AS++SACA++ +L  G Q+ +     G+ +D I+  SL+D Y KC         
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     D+  +F +M+  G+ P   T+ +IL  C   G +
Sbjct: 420 FLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 454 KEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
             G++     +K  + ++  +   S ++D++A+ G L  A+ ++ ++P E DV  W++++
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYV--CSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMI 536

Query: 513 RGCVAH 518
            G V H
Sbjct: 537 AGYVQH 542



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 232/548 (42%), Gaps = 100/548 (18%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ+H      G  +S L +AN L+ +Y + G    A  +F+ +  ++  +W AMI G  +
Sbjct: 180 KQVHSRTFYYGFDSSPL-VANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQ 238

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIHSHILVNGLDFDSVL 142
            G +E+++ LF  M     F    ++S    A   +   E G+Q+H  ++  G       
Sbjct: 239 NGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG------- 291

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
                        F+S   V N            L++ Y+   K+  A R+F        
Sbjct: 292 -------------FHSETYVCN-----------GLVALYSRSRKLISAERIFSTMNSRDG 327

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V +NS+ISG +       AL LF KM+R+ +  D  T+AS+LSAC+S+G L  G Q+H H
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSH 387

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           A K G+  D+I+  +LLD YSK      A K F   +  + +L N M+  Y     + D+
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDS 447

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             IFR M  + +I                                ++F+  S++  C ++
Sbjct: 448 FEIFRQMQMEGMIP-------------------------------NQFTYPSILRTCTSL 476

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------------- 419
            +L LGEQ+   V   G   +  + + L+D Y K G                        
Sbjct: 477 GALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMI 536

Query: 420 ----------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                     +AL LF EM   G++   I F + +SAC     +++GQ+   A  +    
Sbjct: 537 AGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ-IHAQSYAAGF 595

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
             ++   + ++ L+AR G + EA    E++  + ++  W+S++ G    G      +V  
Sbjct: 596 GADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQVFV 654

Query: 530 RMIELDPE 537
           RM+  + E
Sbjct: 655 RMLRTEAE 662



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 176/434 (40%), Gaps = 102/434 (23%)

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           EP    + +L+  Y   G  + A +VFD  ++ S   WN MI  +++   + +   LF +
Sbjct: 92  EP--LLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRR 149

Query: 228 MRRNGVLEDASTLASVLSAC--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           M   G+  +  T A VL AC    + F  + KQVH      G     +VA+ L+D YSK 
Sbjct: 150 MLAEGITPNGYTFAGVLKACVGGDIAF-NYVKQVHSRTFYYGFDSSPLVANLLIDLYSKN 208

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           G                                IE AK +F  +  K +++W +MI GLS
Sbjct: 209 GY-------------------------------IESAKKVFNCICMKDIVTWVAMISGLS 237

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           QNG   EA+ LFC+M+  ++    + L+SV+SA   I   ELGEQ+   V   G  S+  
Sbjct: 238 QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 406 ISTSLVDFYCKC-------------------------------GYD--ALALFNEMRNTG 432
           +   LV  Y +                                G+   AL LF +M+   
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFD-AMK----------------WQYHIDPEIEH 475
           +KP  IT  ++LSAC   G + +G +    A+K                +    D E  H
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 476 -------------YSCMVDLFARAGCLNEAVNLIEQMPFEADVG---MWSSILRGCVAHG 519
                        ++ M+  + +   L+++  +  QM  E  +     + SILR C + G
Sbjct: 418 KFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 520 DKGLGRKVAERMIE 533
              LG ++   +I+
Sbjct: 478 ALYLGEQIHTHVIK 491



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 127/338 (37%), Gaps = 73/338 (21%)

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
           ++ + L + M   GV  +      +L  C + G L    ++H    K G   + ++  +L
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +D Y + G    A K+F E                                 N+S+ SWN
Sbjct: 100 VDNYFRHGDQHGAVKVFDE-------------------------------NSNRSVFSWN 128

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS-SLELGEQVFARVTI 397
            MI       S  +   LF  M    +  + ++ A V+ AC     +    +QV +R   
Sbjct: 129 KMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFY 188

Query: 398 IGLDSDQIISTSLVDFYCKCGY---------------------------------DALAL 424
            G DS  +++  L+D Y K GY                                 +A+ L
Sbjct: 189 YGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILL 248

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSC--MVD 481
           F +M  + + PT    +++LSA     L + G++     +KW +H     E Y C  +V 
Sbjct: 249 FCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH----SETYVCNGLVA 304

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           L++R+  L  A  +   M     V  ++S++ G V  G
Sbjct: 305 LYSRSRKLISAERIFSTMNSRDGVS-YNSLISGLVQQG 341


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 189/616 (30%), Positives = 303/616 (49%), Gaps = 89/616 (14%)

Query: 41  LPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG-HKEKSLQL 94
           +PI N      +L  + + G   +A  LFDEMP+R   S NAMI  +++ G +  K+ +L
Sbjct: 67  MPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTVSNNAMISAYIRNGCNVGKAYEL 126

Query: 95  FNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF---DSVLGSSLVNLYG 151
           F+V+ ++N  S+  +I GF KA       GK   +  L     +   D    ++L+N Y 
Sbjct: 127 FSVLAERNLVSYAAMIMGFVKA-------GKFHMAEKLYRETPYEFRDPACSNALINGYL 179

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           K G+ N A ++   M E D    SA++ G    G++  AR +FDR  D + V W++MI G
Sbjct: 180 KMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAAARDLFDRMPDRNVVSWSAMIDG 239

Query: 212 YISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
           Y+      E   LF  M+R G++E +++T+  +  AC + G +  G Q+HG   ++G   
Sbjct: 240 YMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRMSEGMQIHGLVSRLGFEF 299

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
           D +++++++  YS  G    A K+F  +   D +  N++I+ Y     +E A  +F  MP
Sbjct: 300 DNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLISGYIHNNEVEAAYRVFGRMP 359

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
            K +ISW +MI G S++G    A++LF   N L  + D F   ++IS   N +  E    
Sbjct: 360 VKDVISWTAMIAGFSKSGRVENAIELF---NMLPAK-DDFVWTAIISGFVNNNEYEEALH 415

Query: 391 VFARVTIIG-----------------------------------LDSDQIISTSLVDFYC 415
            +AR+   G                                   L+ +  I  SL+ FY 
Sbjct: 416 WYARMIWEGCKPNPLTISSVLAASAALVALNEGLQIHTCILKMNLEYNLSIQNSLISFYS 475

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           K G                                  +AL ++ +M++ G +P  +TF A
Sbjct: 476 KSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLA 535

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H GLV EG   F+ MK  Y I+PE +HY+CMVD+  RAG L+EA++LI  MPF+
Sbjct: 536 VLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHYACMVDILGRAGLLDEAIDLIRSMPFK 595

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
              G+W +IL     H    L +  A+R+ +L+P+NA  Y+ LS++++ +G+     L++
Sbjct: 596 PHSGVWGAILGASKTHLRLDLAKLAAQRITDLEPKNATPYVVLSNMYSAAGKKIDGDLVK 655

Query: 563 DIMREKHVGKLPGCSW 578
                K + K PGCSW
Sbjct: 656 MAKNLKGIKKSPGCSW 671



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 185/387 (47%), Gaps = 22/387 (5%)

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
           G+ G+   A  + + M   +    +A+++ +A  G++ +ARR+FD     ++V  N+MIS
Sbjct: 52  GRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTVSNNAMIS 111

Query: 211 GYISNNEDT-EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV- 268
            YI N  +  +A  LF  +    ++  A+ +         +GF++ GK            
Sbjct: 112 AYIRNGCNVGKAYELFSVLAERNLVSYAAMI---------MGFVKAGKFHMAEKLYRETP 162

Query: 269 --IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
               D   ++AL++ Y K G  ++A ++F  +   D +  + M+      GR+  A+ +F
Sbjct: 163 YEFRDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAAARDLF 222

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSL 385
             MP+++++SW++MI G    G   E   LF +M +  L  ++  ++  +  AC N   +
Sbjct: 223 DRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRM 282

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILS 445
             G Q+   V+ +G + D ++S S++  Y   G   +A  +++  T     I+T+ +++S
Sbjct: 283 SEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMA--DKVFCTVSDKDIVTWNSLIS 340

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
              H   V+   + F  M  +     ++  ++ M+  F+++G +  A+ L   +P + D 
Sbjct: 341 GYIHNNEVEAAYRVFGRMPVK-----DVISWTAMIAGFSKSGRVENAIELFNMLPAKDDF 395

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMI 532
            +W++I+ G V + +         RMI
Sbjct: 396 -VWTAIISGFVNNNEYEEALHWYARMI 421



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 139/322 (43%), Gaps = 35/322 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + ++C     +  G Q+H    + G     + ++N ++ MY   G    A  +F  +  +
Sbjct: 272 MFKACGNCGRMSEGMQIHGLVSRLGFEFDNV-LSNSVITMYSMLGCTDMADKVFCTVSDK 330

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA--ALEYGKQIH 128
           +  +WN++I G++     E + ++F  MP K+  SW  +I+GF+K+     A+E    + 
Sbjct: 331 DIVTWNSLISGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELFNMLP 390

Query: 129 SHI----------LVNGLDFDSVLGSSLVNLYGKCGD-----------------FNSANQ 161
           +             VN  +++  L      ++  C                    N   Q
Sbjct: 391 AKDDFVWTAIISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEGLQ 450

Query: 162 ----VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
               +L M  E +    ++LIS Y+  G + DA R+F    + + + +NS+ISG+  N  
Sbjct: 451 IHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGF 510

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIVAS 276
             EAL ++ KM+  G   +  T  +VLSAC+  G ++ G  + +      G+  +    +
Sbjct: 511 GDEALGIYKKMQSEGHEPNHVTFLAVLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHYA 570

Query: 277 ALLDTYSKRGMPSDACKLFSEL 298
            ++D   + G+  +A  L   +
Sbjct: 571 CMVDILGRAGLLDEAIDLIRSM 592



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 17/218 (7%)

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           I  NT I      G +++A+ IF  MP K+  SW +M+   +QNG    A  LF  M + 
Sbjct: 42  IQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQR 101

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDA 421
               +   +++ I    N+        V A   ++          +++  + K G  + A
Sbjct: 102 TTVSNNAMISAYIRNGCNVGKAYELFSVLAERNLVSY-------AAMIMGFVKAGKFHMA 154

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
             L+ E       P      A+++     G V E  + F+ M      + ++  +S MVD
Sbjct: 155 EKLYRETPYEFRDPA--CSNALINGYLKMGEVNEALRIFENMG-----ERDVVSWSAMVD 207

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
              R G +  A +L ++MP + +V  WS+++ G +  G
Sbjct: 208 GLCRDGRVAAARDLFDRMP-DRNVVSWSAMIDGYMGEG 244


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 191/688 (27%), Positives = 340/688 (49%), Gaps = 72/688 (10%)

Query: 5    IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
            +D+   LLQ C+  H   + +Q+H   +  G   S   +A R++ +Y   G  +DA  +F
Sbjct: 872  LDFFNDLLQQCSKSH---LSQQIHSQIIVTGSHRSAF-LAARVVSVYAGFGLVSDAQRVF 927

Query: 65   DEMPRRNCFS----WNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKA 116
            +  P   CFS    WN+++   +  G+ E++L+++  M +     + F++ ++I   A A
Sbjct: 928  EVSPIE-CFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIR--ACA 984

Query: 117  DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
             + + +  + +H H++  G  ++  +G+ L+ +YGK G  + A +V   M        + 
Sbjct: 985  LMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNT 1044

Query: 177  LISGYA---NCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
            ++SGYA   +C   ++  R+      + + V W S++S +    +  E + LF +MR  G
Sbjct: 1045 MVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRG 1104

Query: 233  VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
            +   A  LA VLS    L   + GK +HG+  K G  + + V ++L+  Y K G  + A 
Sbjct: 1105 IGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAAR 1164

Query: 293  KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF--------RTMPNKSLISWNSMIVGL 344
             LF E+K  + +  N +I+ Y+  G  ++A  IF          M   +++SW+++I G 
Sbjct: 1165 ILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGF 1224

Query: 345  SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
            +  G   EAL+LF  M    ++ +  ++ASV+S CA +++L LG ++   V    +D + 
Sbjct: 1225 ASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNI 1284

Query: 405  IISTSLVDFYCKCG---------------------------------YDALALFNEMRNT 431
            ++   L++ Y K G                                  +A+  F++M   
Sbjct: 1285 LVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKD 1344

Query: 432  GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
            G +P  +TF A+LSAC H GLV EG++ FD M  ++ ++P++EHY+CMVDL  RAG L E
Sbjct: 1345 GFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQE 1404

Query: 492  AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551
            A  +++ MP E +  +W ++L  C  H +  +  + A ++  L+ E A +Y+ LS+I+A 
Sbjct: 1405 ASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAA 1464

Query: 552  SGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQ-----HQ 606
            SG WE S+ +R   + K + K PG SW   +    +       Q A  +E+ +       
Sbjct: 1465 SGRWEDSAKVRISAKTKGLKKTPGQSWIQ-VKKKVYMFSAGNTQHAELEEVYRILKDLGL 1523

Query: 607  SADFCDYIHGFDQARLPLSSKRSFVLGY 634
              +   YI   D+       +RS +LGY
Sbjct: 1524 QMEVEGYIPDIDE------EQRSILLGY 1545


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 182/609 (29%), Positives = 297/609 (48%), Gaps = 104/609 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C     +  G+Q+H   ++ G        AN L+ MY + G+   A  +F++MP  
Sbjct: 211 VVNACTGSRDLEAGRQVHGAVVRTGYEKDVF-TANALVDMYSKLGDIEMAATVFEKMPAA 269

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWNA I G +  GH  ++L+L   M       N F+ + ++   A A   A   G+Q
Sbjct: 270 DVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGA--GAFNLGRQ 327

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  ++    DFD  +   LV++                               YA  G 
Sbjct: 328 IHGFMVKAVADFDEFVAVGLVDM-------------------------------YAKHGF 356

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA--STLASVL 244
           ++DAR+VFD       ++WN++ISG   +    E L LFH+MR+ G+  D   +TLASVL
Sbjct: 357 LDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVL 416

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            + +S   + H +QVH  A K+G++ D  V + L+D+Y K                    
Sbjct: 417 KSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWK-------------------- 456

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      CG+++ A  +F+   +  +IS  +M+  LSQ     +A+ LF  M +  
Sbjct: 457 -----------CGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKG 505

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           L  D F L+S+++AC ++S+ E G+QV A +      SD     +LV  Y KCG      
Sbjct: 506 LEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDAD 565

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                        AL LF+ M + GV P  IT T++LSAC+H G
Sbjct: 566 MAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAG 625

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV + +K+F++MK  + ID   EHY+CM+D+  RAG L +A+ L+  MPF+A+  +W ++
Sbjct: 626 LVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGAL 685

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L     H D  LGR  AE++  L+PE +  ++ L++ +A++G W++ + +R +M++ +V 
Sbjct: 686 LGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVK 745

Query: 572 KLPGCSWAD 580
           K P  SW +
Sbjct: 746 KEPAMSWVE 754



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 163/650 (25%), Positives = 257/650 (39%), Gaps = 150/650 (23%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC----------------- 54
           L    T  S+  G  LH H LK G+L      +N LL +Y RC                 
Sbjct: 11  LARFGTSRSLFAGAHLHSHLLKSGLLAG---FSNHLLTLYSRCRLPSAARAVFDEIPDPC 67

Query: 55  --------------GNPTDALLLFDEMPRR------------------------------ 70
                         G P DALL F  M  R                              
Sbjct: 68  HVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQVHALAV 127

Query: 71  ------NCFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKNDFSWNMLISGFAKADLAA 120
                 + F  NA++  +   G  +++ ++F+    V  ++N  SWN +IS + K D + 
Sbjct: 128 ATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSG 187

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSA 176
              G  +   ++ +G   +    S +VN      D  +  QV    +    E D F  +A
Sbjct: 188 DAIG--VFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANA 245

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+  Y+  G +  A  VF++      V WN+ ISG +++  D  AL L  +M+ +G++ +
Sbjct: 246 LVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPN 305

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             TL+SVL AC+  G    G+Q+HG   K     D  VA  L+D Y+K G   DA K+F 
Sbjct: 306 VFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFD 365

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            +   D IL N +I+                               G S +G   E L L
Sbjct: 366 FMPRRDLILWNALIS-------------------------------GCSHDGRHGEVLSL 394

Query: 357 FCNMNK--LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           F  M K  LDL +++ +LASV+ + A+  ++    QV A    IGL SD  +   L+D Y
Sbjct: 395 FHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSY 454

Query: 415 CKCGY---------------------------------DALALFNEMRNTGVKPTIITFT 441
            KCG                                  DA+ LF +M   G++P     +
Sbjct: 455 WKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLS 514

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           ++L+AC      ++G K   A   +     ++   + +V  +A+ G + +A      +P 
Sbjct: 515 SLLNACTSLSAYEQG-KQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLP- 572

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551
           E  +  WS+++ G   HG       +  RM  LD   A  +I L+S+ + 
Sbjct: 573 ERGIVSWSAMIGGLAQHGHGKRALDLFHRM--LDEGVAPNHITLTSVLSA 620



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 138/558 (24%), Positives = 227/558 (40%), Gaps = 99/558 (17%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L++ Y+ C   + AR VFD   D   V W+S+++ Y +N    +ALL F  MR  GV  +
Sbjct: 43  LLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCN 102

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
              L  VL     + F   G QVH  A    ++ DV VA+AL+  Y   GM  +A ++F 
Sbjct: 103 EFALPVVLKCAPDVRF---GAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFD 159

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           E               Y   G              ++ +SWN+MI    +N    +A+ +
Sbjct: 160 E---------------YVGVG------------GERNAVSWNTMISAYVKNDQSGDAIGV 192

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M     R ++F  + V++AC     LE G QV   V   G + D   + +LVD Y K
Sbjct: 193 FREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSK 252

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
            G                                 + AL L  +M+++G+ P + T +++
Sbjct: 253 LGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSV 312

Query: 444 LSACDHCGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           L AC   G    G++    M K     D  +     +VD++A+ G L++A  + + MP  
Sbjct: 313 LKACAGAGAFNLGRQIHGFMVKAVADFDEFVA--VGLVDMYAKHGFLDDARKVFDFMP-R 369

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
            D+ +W++++ GC   G  G    +  RM +   +       L+S+  ++   E     R
Sbjct: 370 RDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTR 429

Query: 563 DI--MREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQHQ---------SADFC 611
            +  + EK +G L      +G+  + W    +   +  F E +            +   C
Sbjct: 430 QVHALAEK-IGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQC 488

Query: 612 DYIHGFDQARLPLSSKR------SFVLGYLLSTLSLKVVYSNLCSSLVVPTRNEL--AYL 663
           D  HG D  +L +   R      SFVL  LL          N C+SL    + +   A+L
Sbjct: 489 D--HGEDAIKLFVQMLRKGLEPDSFVLSSLL----------NACTSLSAYEQGKQVHAHL 536

Query: 664 LIRMVYGNILTIALLLLA 681
           + R    ++     L+ A
Sbjct: 537 IKRQFTSDVFAGNALVYA 554



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C +  +   GKQ+H H +K+    S +   N L+  Y +CG+  DA + F  +
Sbjct: 513 LSSLLNACTSLSAYEQGKQVHAHLIKRQ-FTSDVFAGNALVYAYAKCGSIEDADMAFSGL 571

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P R   SW+AMI G  + GH +++L LF+ M  +    N  +   ++S    A L   + 
Sbjct: 572 PERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVD-DA 630

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
            K   S     G+D      + ++++ G+ G    A +++N M
Sbjct: 631 KKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNM 673


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 183/596 (30%), Positives = 302/596 (50%), Gaps = 78/596 (13%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +H   +K G+ N+   ++ +L++  +      G P  A+ +F+ +   N   WN M  
Sbjct: 7   RMIHAQMIKTGLHNTNYALS-KLIEFCILSPHFDGLPY-AISVFETIQEPNLLIWNTMFR 64

Query: 81  GFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
           G         +L+L+  M       N +++  L+   AK+   A + G+QIH H+L  G 
Sbjct: 65  GHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSK--AFKEGQQIHGHVLKLGC 122

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D D  + +SL+++Y + G    A++V +     D    +ALI GYA+ G + +A+++FD 
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                 V WN+MISGY       EAL LF  M +  V  D ST+ +V+SAC+  G +E G
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           +QVH        IDD              G  S+       LK+     +N +I +YS C
Sbjct: 243 RQVHS------WIDD-------------HGFGSN-------LKI-----VNALIDLYSKC 271

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G +E A  +F  +P K +ISWN++I G +      EAL LF  M +     +  ++ S++
Sbjct: 272 GELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 331

Query: 377 SACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCG---------------- 418
            ACA++ ++++G    V+    + G+ +   + TSL+D Y KCG                
Sbjct: 332 PACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 391

Query: 419 ---YDALA--------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
              ++A+               +F+ MR  G++P  ITF  +LSAC H G++  G+  F 
Sbjct: 392 LSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFR 451

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
           +M   Y + P++EHY CM+DL   +G   EA  +I  M  E D  +W S+L+ C  HG+ 
Sbjct: 452 SMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNV 511

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            LG   A+ +I+++PEN  +Y+ LS+I+AT+G W + +  R ++ +K + K+PGCS
Sbjct: 512 ELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCS 567



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/525 (27%), Positives = 240/525 (45%), Gaps = 112/525 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H H LK G  +  L +   L+ MY++ G   DA  +FDE P R
Sbjct: 97  LLKSCAKSKAFKEGQQIHGHVLKLGC-DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHR 155

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------------- 115
           +  S+ A+I+G+   G+ E + ++F+ +P K+  SWN +ISG+A+               
Sbjct: 156 DVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 215

Query: 116 ------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
                             A   ++E G+Q+HS I  +G   +  + ++L++LY KCG+  
Sbjct: 216 KTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELE 275

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
           +A                        CG       +F+       + WN++I GY   N 
Sbjct: 276 TA------------------------CG-------LFEGLPYKDVISWNTLIGGYTHMNL 304

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK--VGVIDDVIVA 275
             EALLLF +M R+G   +  T+ S+L AC+ LG ++ G+ +H +  K   GV +   + 
Sbjct: 305 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLR 364

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
           ++L+D Y+K                               CG IE A  +F ++ +KSL 
Sbjct: 365 TSLIDMYAK-------------------------------CGDIEAAHQVFNSILHKSLS 393

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           SWN+MI G + +G    + D+F  M K  +  D  +   ++SAC++   L+LG  +F  +
Sbjct: 394 SWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 453

Query: 396 TIIGLDSDQIISTSLVDFYCKC---GYDAL-ALFNEMRNT-GVKPTIITFTAILSACDHC 450
           T      D  ++  L  + C     G+  L     EM NT  ++P  + + ++L AC   
Sbjct: 454 T-----QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMH 508

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVDLFARAGCLNEAVN 494
           G V+ G+ +   +     I+PE    Y  + +++A AG  NE  N
Sbjct: 509 GNVELGESFAQNL---IKIEPENPGSYVLLSNIYATAGRWNEVAN 550


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 185/614 (30%), Positives = 294/614 (47%), Gaps = 106/614 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C        G Q+H + LK G     L  +N L+ MY +C  P  A  +FD M
Sbjct: 9   LVSILRVCTRKGLSDQGGQVHCYLLKSGS-GLNLITSNYLIDMYCKCREPLMAYKVFDSM 67

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAAL 121
           P RN  SW+A++ G +  G  + SL LF+ M      P +  FS N+   G     L AL
Sbjct: 68  PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGL----LNAL 123

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           E G QIH   L  G +    +G+SLV++Y KCG  N A +                    
Sbjct: 124 EKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEK-------------------- 163

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE--DAST 239
                      VF R  D S + WN+MI+G++     ++AL  F  M+   + E  D  T
Sbjct: 164 -----------VFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFT 212

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L S+L ACSS G +  GKQ+HG   + G                    PS A        
Sbjct: 213 LTSLLKACSSTGMIYAGKQIHGFLVRSGF-----------------HCPSSA-------- 247

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                +  +++ +Y  CG +  A+  F  +  K++ISW+S+I+G +Q G  +EA+ LF  
Sbjct: 248 ----TITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKR 303

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           + +L+ ++D F+L+S+I   A+ + L  G+Q+ A    +    +  +  S+VD Y KCG 
Sbjct: 304 LQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGL 363

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                             ++ +F EM    ++P  + + A+LSA
Sbjct: 364 VDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSA 423

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H G++KEG++ F  +   + I P +EHY+C+VDL  RAG L EA +LI+ MP + +VG
Sbjct: 424 CSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVG 483

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C  HGD  LG++V + ++ +D +N   Y+ +S+++  +G W +    R++  
Sbjct: 484 IWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGN 543

Query: 567 EKHVGKLPGCSWAD 580
            K + K  G SW +
Sbjct: 544 IKGLKKEAGMSWVE 557


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 183/609 (30%), Positives = 299/609 (49%), Gaps = 79/609 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---GNPTDALLLFDEM 67
           LL  C T  S+ +   +H   +K G+ N+   ++  L    +     G P  A+ +FD +
Sbjct: 8   LLHXCKTLQSLRI---IHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPY-AISVFDTI 63

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
                  WN M  G         +L+L+  M       N +++  L+   AK+   A + 
Sbjct: 64  QEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKS--XAFKE 121

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+H  +L  G D D  + +SL+++Y + G    A +V +     D    +ALI+GYA+
Sbjct: 122 GQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYAS 181

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G +  A ++FD       V WN+ ISGY       EAL LF KM +  V  D ST+ +V
Sbjct: 182 RGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTV 241

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSAC+  G +E G+QVH      G   ++ + +AL+D                       
Sbjct: 242 LSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALID----------------------- 278

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                   +YS CG +E A  +F+ + NK +ISWN++I G +      EAL LF +M + 
Sbjct: 279 --------LYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRS 330

Query: 364 DLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
             + +  ++ S++SACA++ ++++G    V+    + G+ +   + TSL+D Y KCG   
Sbjct: 331 GEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 390

Query: 419 -----YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACD 448
                +D                         A  +F+ MR  G++P  ITF  +LSAC 
Sbjct: 391 AAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 450

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H G++  G+  F +M   Y + P++EHY CM+DL   +G   EA  +I  M  E D  +W
Sbjct: 451 HSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIW 510

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            S+L+ C  HG+  LG   A+ +I+++PEN  +Y+ LS+I+AT+  W + +  R ++ +K
Sbjct: 511 CSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDK 570

Query: 569 HVGKLPGCS 577
            + K+PGCS
Sbjct: 571 GMKKVPGCS 579


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 188/657 (28%), Positives = 312/657 (47%), Gaps = 116/657 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C     +  G++ H   +K G L++ + + N LL MY +C    DA+  F ++
Sbjct: 140 LASVLSACGALVDVECGRRCHGISIKIG-LDNNIYVGNALLGMYAKCRCIGDAIQAFGDV 198

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG------------FAK 115
           P  N  S+ AM+ G        ++ +LF +M +      ++ +S             F  
Sbjct: 199 PEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGL 258

Query: 116 AD----LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
            D    L++  +G+Q+H   + +G + D  L +SL+++Y K G+ +SA  +   M E   
Sbjct: 259 HDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSV 318

Query: 172 FCLSALISGYAN-----------------------------------CGKMNDARRVFDR 196
              + +I+GY                                      G +   R++FD 
Sbjct: 319 VSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDG 378

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
            +  S   WN+++SGY  N    EA+ LF +M+   V  D +TLA +LS+ + +  LE G
Sbjct: 379 MSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGG 438

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           +QVH  + K     D+ +AS L+  YSK                               C
Sbjct: 439 RQVHAVSQKAVFRTDIYLASGLIGMYSK-------------------------------C 467

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G++E AK IF  +    ++ WNSM+ GLS N    EA   F  M +  +   +FS A+V+
Sbjct: 468 GKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVL 527

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------- 419
           S CA +SSL  G QV +++   G  +D  + ++L+D Y KCG                  
Sbjct: 528 SCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTV 587

Query: 420 ----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                           +A+ L+ +M  +G KP  ITF A+L+AC H GLV  G K F++M
Sbjct: 588 TWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSM 647

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
           + ++ ++P ++HY+C++D   RAG L+EA  LI++MP + D  +W  +L  C  + D  L
Sbjct: 648 QQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSL 707

Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            R+ AE +  LDP+N+  Y+ L++I+++ G W+ +  +R++M    V K PG SW +
Sbjct: 708 ARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIE 764



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 155/634 (24%), Positives = 265/634 (41%), Gaps = 149/634 (23%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M+T+  YLA LLQ+C    +   GK +H H L+  + + T  ++NRL++ Y +C     +
Sbjct: 1   METKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTF-LSNRLIEFYAKCNAIDAS 59

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS-----GFAK 115
             LFD+MP+R+ ++WNA++  + K    E +  LF  MP++N  SWN LIS     GF +
Sbjct: 60  RRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQ 119

Query: 116 ADLAA----------------------------LEYGKQIHSHILVNGLDFDSVLGSSLV 147
             L                              +E G++ H   +  GLD +  +G++L+
Sbjct: 120 KALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALL 179

Query: 148 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
            +Y KC     A Q    + EP++   +A++ G A+  ++N+A R               
Sbjct: 180 GMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFR--------------- 224

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE------------- 254
                           LF  M RN +  D+ +L+SVL  CS  G  E             
Sbjct: 225 ----------------LFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSD 268

Query: 255 -HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
            HG+QVH    K G   D+ + ++LLD Y+K G    A  +F  +     +  N MI  Y
Sbjct: 269 VHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGY 328

Query: 314 SS-----------------------------------CGRIEDAKHIFRTMPNKSLISWN 338
                                                 G IE  + +F  M + SL SWN
Sbjct: 329 GQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWN 388

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           +++ G SQN +  EA+ LF  M    +  D+ +LA ++S+ A +  LE G QV A     
Sbjct: 389 TILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKA 448

Query: 399 GLDSDQIISTSLVDFYCKCG---------------------------------YDALALF 425
              +D  +++ L+  Y KCG                                  +A   F
Sbjct: 449 VFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFF 508

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            +MR  G+ P+  ++  +LS C     + +G++    +  + +++      S ++D++++
Sbjct: 509 KKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVG-SALIDMYSK 567

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            G ++ A  + + M  +  V  W+ ++ G   +G
Sbjct: 568 CGDVDAARWVFDMMLGKNTV-TWNEMIHGYAQNG 600



 Score = 39.3 bits (90), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 14/172 (8%)

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-GYDA-LALFNEMR 429
           LAS++  C +  +   G+ + A +    L  D  +S  L++FY KC   DA   LF++M 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
               K  I T+ AIL A      +++    F  M      +  I  ++ ++    R G  
Sbjct: 68  ----KRDIYTWNAILGAYCKASELEDAHVLFAEMP-----ERNIVSWNTLISALTRNGFE 118

Query: 490 NEAVNLIEQMPFEADVG---MWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
            +A+ +  +M  E  V      +S+L  C A  D   GR+     I++  +N
Sbjct: 119 QKALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDN 170


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 182/613 (29%), Positives = 297/613 (48%), Gaps = 108/613 (17%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG-NPTDALLLFD 65
           + A LLQ+C    S   G Q H H +K G L++   + N LL +Y + G N  +A  +FD
Sbjct: 62  FYASLLQTCTKAVSFTHGIQFHSHAIKSG-LDTDRFVGNSLLALYFKLGPNLFEARRVFD 120

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAAL 121
            +  ++  SW +MI G++K+   +KSL+LF  M     + N F+ + +I   A + L  L
Sbjct: 121 GLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIK--ACSGLGDL 178

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             GK  H  ++V G D + V+ ++L+++YG+    + A  V   + +PD  C        
Sbjct: 179 RLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAIC-------- 230

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTL 240
                                  W S+IS +  N+   +AL  F+ M R++G+  D  T 
Sbjct: 231 -----------------------WTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTF 267

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            +VL+AC +LG L+ GK+VH      G+  +V V S+L+D Y K       C+L ++   
Sbjct: 268 GTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGK-------CRLVNQ--- 317

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                        S C        +F  M  K+L+SW +++ G  QNG     + +F   
Sbjct: 318 -------------SQC--------VFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFREG 356

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
            K+    D +S  +V+ ACA ++++  G++V  +        D +  ++LVD Y KC   
Sbjct: 357 KKV----DTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCI 412

Query: 418 ------------------------------GYDALALFNEMRNTGVKPTIITFTAILSAC 447
                                         G +   LF+EM   G++P  I+F  +L AC
Sbjct: 413 DFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFAC 472

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV +G+K+F AM   Y I P IEHY+CM+DL  RAG L EA NLIE      +  +
Sbjct: 473 SHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSL 532

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W+ +L  C A        ++A++ +EL P++  +Y+ L++++   G W+ +  IR++M +
Sbjct: 533 WTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTK 592

Query: 568 KHVGKLPGCSWAD 580
           + VGK+PG SW +
Sbjct: 593 RGVGKMPGTSWIE 605



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 208/486 (42%), Gaps = 109/486 (22%)

Query: 90  KSLQLFNVMPQKNDFSWNMLISG-FAKADL-------AALEYGKQIHSHILVNGLDFDSV 141
           KS  LF  +   N   W  L +  F  A L        +  +G Q HSH + +GLD D  
Sbjct: 37  KSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRF 96

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           +G+SL+ LY K G              P+ F                +ARRVFD      
Sbjct: 97  VGNSLLALYFKLG--------------PNLF----------------EARRVFDGLFYKD 126

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            + W SMI+GY+   +  ++L LF +M   G+  +  TL++V+ ACS LG L  GK  HG
Sbjct: 127 LISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHG 186

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
                G   + ++++AL+D Y +     DA  +F EL                       
Sbjct: 187 VVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVEL----------------------- 223

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACA 380
                   P    I W S+I   ++N    +AL  F +M  K  L  D F+  +V++AC 
Sbjct: 224 --------PQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACG 275

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDALALFNEMRNT- 431
           N+  L+ G++V A+V   GL  +  + +SLVD Y KC         +D +++ N +  T 
Sbjct: 276 NLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTA 335

Query: 432 --------------------GVKPTIITFTAILSACDHCGLVKEGQ----KWFDAMKWQY 467
                               G K    +F  +L AC     V++G+    ++     W+ 
Sbjct: 336 LLGGYCQNGDFESVIRIFREGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWR- 394

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
               ++   S +VDL+A+ GC++ A  +  +M    ++  W+S++ G   +G  G   ++
Sbjct: 395 ----DVVTESALVDLYAKCGCIDFAYRIFVRMSVR-NLITWNSMIYGFAQNGRGGEVFQL 449

Query: 528 AERMIE 533
            + MIE
Sbjct: 450 FDEMIE 455


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 193/610 (31%), Positives = 300/610 (49%), Gaps = 80/610 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-----ALLLFD 65
           LL SC T   +   KQ+H   L+  + NS L +  +L+       +P+      AL LF 
Sbjct: 18  LLASCKTLRHV---KQIHAQILRSKMDNSNL-LLLKLVLCCCTLPSPSPSALDYALSLFS 73

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMPQKNDFSWNMLISGFAKADLAA 120
            +P       N ++  F +    E +L L+     N  P  + FS+  L+   +K  L+A
Sbjct: 74  HIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPL-DRFSFPPLLKAVSK--LSA 130

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L  G +IH                    L  K G F++           D F  SALI+ 
Sbjct: 131 LNLGLEIHG-------------------LASKFGFFHA-----------DPFIQSALIAM 160

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA CG++ DAR +FD+ +    V WN MI GY  N      L L+ +M+ +G   DA  L
Sbjct: 161 YAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIIL 220

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            +VLSAC+  G L +GK +H      G      + ++L++ Y+  G    A +++ +L  
Sbjct: 221 CTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPS 280

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
              ++   M++ Y+  G ++DA+ IF  M  K L+ W++MI G +++  P+EAL LF  M
Sbjct: 281 KHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEM 340

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
            +  +  D+ ++ SVISACAN+ +L   + +       G      I+ +L+D Y KCG  
Sbjct: 341 QRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNL 400

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                            A+ALF+ M+   ++P  +TF  +L AC
Sbjct: 401 VKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYAC 460

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV+EGQK+F +M  ++ I P+ EHY CMVDL+ RA  L +A+ LIE MPF  +V +
Sbjct: 461 SHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVII 520

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W S++  C  HG+  LG   A R++EL+P++  A + LS+I+A    W+   L+R +M+ 
Sbjct: 521 WGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKH 580

Query: 568 KHVGKLPGCS 577
           K V K   CS
Sbjct: 581 KGVSKEKACS 590


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 273/545 (50%), Gaps = 71/545 (13%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
           F   A++  + KL   E S ++FN M + N  SWN +I+GF   DL    +   +   ++
Sbjct: 207 FVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAF--DLFLRMM 264

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGYANCGKMN 188
             G+  D+     +    G   D N A +V    L +  + +    +ALI   + CG + 
Sbjct: 265 GEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQ 324

Query: 189 DARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +AR +F+    T   +  WN+MISGY+ +  + +AL LF KM +N +  D  T  SV +A
Sbjct: 325 EARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNA 384

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            ++L  L  GK+VH  A K G                              L+V    + 
Sbjct: 385 IAALKCLSLGKKVHARAIKSG------------------------------LEVNYVSIS 414

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +   Y+ CG +ED + +F  M ++ LISW S++   SQ     +A+++F NM    + 
Sbjct: 415 NAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIA 474

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            ++F+ +SV+ +CAN+  LE G+QV   +  +GLD D+ I ++LVD Y KCG        
Sbjct: 475 PNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKV 534

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     DAL LF  M   GV+P  +TF  +L AC H GLV
Sbjct: 535 FNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLV 594

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG ++F  MK  Y + PE+EHY+C+VDL +R G LN+A+  I +MP E +  +W ++L 
Sbjct: 595 EEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLG 654

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  HG+  LG   A++++    EN+  Y+ LS+ +  SG ++    +R +M+E+ V K 
Sbjct: 655 ACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKE 714

Query: 574 PGCSW 578
           PGCSW
Sbjct: 715 PGCSW 719



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 156/590 (26%), Positives = 262/590 (44%), Gaps = 108/590 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALL 62
           +I  L  LL+ C     +   K +H   LK    N  +L + N +   Y +C +   A  
Sbjct: 67  QIQPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACR 126

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAA 120
           LFD+M +RN FSW  +I G  + G      + F  M  +  F      SG  +    L +
Sbjct: 127 LFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDS 186

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           +E G  +H+ I++ G    + + ++L+N+Y K  +   + +V N M              
Sbjct: 187 IELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM-------------- 232

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
                            T+ + V WN+MI+G+ SN+   +A  LF +M   GV  DA T 
Sbjct: 233 -----------------TEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTF 275

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
             V  A   L  +   K+V G+A ++GV  + +V +AL+D  SK                
Sbjct: 276 IGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSK---------------- 319

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRT--MPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                          CG +++A+ IF +  +  +    WN+MI G  ++G   +AL+LF 
Sbjct: 320 ---------------CGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFA 364

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKC 417
            M + D+ +D ++  SV +A A +  L LG++V AR    GL+ + + IS ++ + Y KC
Sbjct: 365 KMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKC 424

Query: 418 GY---------------------------------DALALFNEMRNTGVKPTIITFTAIL 444
           G                                   A+ +F+ MR  G+ P   TF+++L
Sbjct: 425 GSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVL 484

Query: 445 SACDHCGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
            +C +  L++ GQ+    + K    +D  IE  S +VD++A+ GCL +A  +  ++   A
Sbjct: 485 VSCANLCLLEYGQQVHGIICKVGLDMDKCIE--SALVDMYAKCGCLGDAKKVFNRIS-NA 541

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATS 552
           D   W++I+ G   HG      ++  RM++L  E NA  +  L  +FA S
Sbjct: 542 DTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTF--LCVLFACS 589



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 141/285 (49%), Gaps = 38/285 (13%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +GK++H   +K G+  + + I+N +   Y +CG+  D   +F+ M  R+  SW +++ 
Sbjct: 391 LSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVT 450

Query: 81  GFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
            + +    +K++++F+ M  +    N F+++ ++   + A+L  LEYG+Q+H  I   GL
Sbjct: 451 AYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVL--VSCANLCLLEYGQQVHGIICKVGL 508

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D D  + S+LV++Y KCG    A +V N +   D    +A+I+G+A  G ++D       
Sbjct: 509 DMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD------- 561

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                                   AL LF +M + GV  +A T   VL ACS  G +E G
Sbjct: 562 ------------------------ALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEG 597

Query: 257 KQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            Q      K  G++ ++   + ++D  S+ G  +DA +  S + V
Sbjct: 598 LQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPV 642


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  292 bits (748), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 186/607 (30%), Positives = 291/607 (47%), Gaps = 100/607 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A   +SC    +  +G QLH + LK       + +    L MY +C    DA  +F+  
Sbjct: 274 FASAFRSCAGLSAFELGTQLHAYALKTNFGYDNI-VGTATLDMYAKCDRMVDARKVFNTF 332

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML-ISGFAKADLAALEY--G 124
           P     S NA+I G+ +     ++L++F  + QK+   ++ + +SG   A  A   Y  G
Sbjct: 333 PNPTRQSHNALIVGYARQDQVLEALEIFRSL-QKSYLDFDEISLSGALTACSAIKGYLEG 391

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
            Q+H   +  GLDF+  +                AN +L+M               YA C
Sbjct: 392 IQLHGLAVKCGLDFNICV----------------ANTILDM---------------YAKC 420

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G + +A  +FD      +V WN++I+ +  N    E L LF  M R+ +  D  T  SV+
Sbjct: 421 GALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVV 480

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+    L +G +VHG   K G+  D  V SA++D Y K                    
Sbjct: 481 KACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCK-------------------- 520

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      CG + +A+ I   +  ++ +SWNS+I G S       AL  F  M ++ 
Sbjct: 521 -----------CGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVG 569

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           +  D F+ A+V+  CAN++++ELG+Q+  ++  + L SD  I++++VD Y KCG      
Sbjct: 570 VIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSR 629

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       DA+ LF EM+   VKP    F ++L AC H G
Sbjct: 630 IMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMG 689

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V +G  +F  M+  Y +DP++EHYSCMVDL  R+G +NEA+ LIE MPFEAD  +W ++
Sbjct: 690 FVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTL 749

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C   G+  +  K A  +++LDP+++ AY+ LS+++A +G W + + IR  M+   + 
Sbjct: 750 LGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLK 809

Query: 572 KLPGCSW 578
           K PGCSW
Sbjct: 810 KEPGCSW 816



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 148/577 (25%), Positives = 263/577 (45%), Gaps = 109/577 (18%)

Query: 1   MDTRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           ++ + DY   A +L++C       +G Q+H   ++ G  +S +     L+ MY  C    
Sbjct: 164 LEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMG-FDSDVVTGTALVDMYSTCKKLD 222

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-A 116
            A  +F EMP RN   W+A+I G+++     + L+L+ VM  +    S     S F   A
Sbjct: 223 HAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCA 282

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            L+A E G Q+H++ L     +D+++G++ +++Y K                        
Sbjct: 283 GLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAK------------------------ 318

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
                  C +M DAR+VF+   + +    N++I GY   ++  EAL +F  ++++ +  D
Sbjct: 319 -------CDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFD 371

Query: 237 ASTLASVLSACSSL-GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
             +L+  L+ACS++ G+LE G Q+HG A K G+  ++ VA+ +LD Y+K G   +AC +F
Sbjct: 372 EISLSGALTACSAIKGYLE-GIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIF 430

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            ++++ D +                               SWN++I    QN    E L 
Sbjct: 431 DDMEIKDAV-------------------------------SWNAIIAAHEQNEHVEETLA 459

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF +M +  +  D ++  SV+ ACA   +L  G +V  RV   G+  D  + ++++D YC
Sbjct: 460 LFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYC 519

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +AL+ F+ M   GV P   T+  
Sbjct: 520 KCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYAT 579

Query: 443 ILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           +L  C +   V+ G++     +K Q H D  I   S +VD++++ G + ++  + E+ P 
Sbjct: 580 VLDICANLATVELGKQIHGQILKLQLHSDVYIA--STIVDMYSKCGNMQDSRIMFEKAP- 636

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
           + D   WS+++    A+   GLG    +   E+  +N
Sbjct: 637 KRDYVTWSAMI---CAYAYHGLGEDAIKLFEEMQLQN 670



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 148/578 (25%), Positives = 244/578 (42%), Gaps = 141/578 (24%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + + Q C+   +I+ GKQ H      G +  T+ ++N LLQ Y +C N   A  +FD+M
Sbjct: 41  FSHIFQKCSNLKAINPGKQAHAQITVTGFV-PTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG-------------FA 114
           P+R+  SWN MI G+  +G+ E +  LF+ MP+++  SWN ++S              F 
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 115 KADLAALEY--------------------GKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
           K  L  +++                    G Q+H   +  G D D V G++LV++Y  C 
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
             + A  +   M E +  C SA+I                               +GY+ 
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVI-------------------------------AGYVR 248

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N+  TE L L+  M   G+    +T AS   +C+ L   E G Q+H +A K     D IV
Sbjct: 249 NDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIV 308

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            +A LD Y+K                               C R+ DA+ +F T PN + 
Sbjct: 309 GTATLDMYAK-------------------------------CDRMVDARKVFNTFPNPTR 337

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
            S N++IVG ++    +EAL++F ++ K  L  D+ SL+  ++AC+ I     G Q+   
Sbjct: 338 QSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGL 397

Query: 395 VTIIGLDSDQIISTSLVDFYCKCGY---------------------------------DA 421
               GLD +  ++ +++D Y KCG                                  + 
Sbjct: 398 AVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEET 457

Query: 422 LALFNEMRNTGVKPTIITFTAILSACD-----HCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
           LALF  M  + ++P   TF +++ AC      + G+   G+     M   + +       
Sbjct: 458 LALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVG------ 511

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           S ++D++ + G L EA  + E++     V  W+SI+ G
Sbjct: 512 SAIIDMYCKCGMLVEAEKIHERLEERTTVS-WNSIISG 548



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 10/229 (4%)

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T + +   CS+L  +  GKQ H      G +  V V++ LL  Y K    + A  +F ++
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              D I  NTMI  Y+  G +E A+ +F +MP + ++SWNSM+    QNG   +++++F 
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M  L+++ D  + A V+ AC  I    LG QV      +G DSD +  T+LVD Y  C 
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 419 Y--DALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
               A  +F EM  RN+      + ++A+++         EG K +  M
Sbjct: 220 KLDHAFNIFCEMPERNS------VCWSAVIAGYVRNDRFTEGLKLYKVM 262



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---GYDALALF 425
           K + + +   C+N+ ++  G+Q  A++T+ G      +S  L+ FYCKC    Y A  +F
Sbjct: 38  KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNY-AFNVF 96

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
           ++M    V    I++  ++      G ++  Q  FD+M      + ++  ++ M+  + +
Sbjct: 97  DKMPQRDV----ISWNTMIFGYAGVGNMEFAQFLFDSMP-----ERDVVSWNSMLSCYLQ 147

Query: 486 AGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKV 527
            G   +++ +  +M     + D   ++ +L+ C    D GLG +V
Sbjct: 148 NGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQV 192


>gi|224080303|ref|XP_002306089.1| predicted protein [Populus trichocarpa]
 gi|222849053|gb|EEE86600.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 196/639 (30%), Positives = 309/639 (48%), Gaps = 84/639 (13%)

Query: 19  HSIHVGKQLHLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWN 76
            S+  G   H+  +K G    TLPI  +N+L+ +Y +     +A  LFDEMP+RN +SWN
Sbjct: 2   RSLKDGLMRHVRSIKSGF---TLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWN 58

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD---LAALE----------- 122
            +I   +K  +  ++  +F+    ++  ++N ++SG+   D     ALE           
Sbjct: 59  TIISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERNALELFVEMQSIRNE 118

Query: 123 ----------------------YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
                                 YG+Q+HS+++  G D    + SSL+++Y KCG F  A 
Sbjct: 119 IEIDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEAC 178

Query: 161 QVLNMMKEPDDFCL---SALISGYANCGKMNDARRVFDRTTD-TSSVMWNSMISGYISNN 216
           QV    +    F L   +A+++ Y   G M  A R+F R ++   SV WN++ISGY+ N 
Sbjct: 179 QVFKGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNG 238

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
              EAL LF  M  NGV  +  T  SVLSAC+ L  L+ GK++H    K G+     V S
Sbjct: 239 YPVEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVES 298

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
            ++D Y K G    A  L     V  +  + +MI  +SS G + +A  +F ++  K+ I 
Sbjct: 299 GIVDVYCKCGNMKYAESLLLTRGVRSSFSITSMIVGFSSQGNMVEACRLFDSLEEKNSIV 358

Query: 337 WNSMIVG---LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
           W ++  G   L Q  +  E L  +  + K     D   L S  + CA  ++L  G+Q+  
Sbjct: 359 WAALFSGYVKLKQCEAFFELLREY--IAKEAAIPDALILISAFNVCAFQAALGPGKQIHG 416

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCG---------------------------------YD 420
            V  +G++ D   +T+++D Y KCG                                   
Sbjct: 417 YVFRMGIEMDMKTTTAMIDMYSKCGSIPYAEKLFLKVIERDLVLYNVMLAGYAHHGHEIK 476

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           A+ LF EM   GV P  +TF A+LSAC H GLV  G+K F +M   YHI PE +HY+CM+
Sbjct: 477 AINLFQEMLERGVGPDAVTFVALLSACRHRGLVDLGEKTFYSMTEDYHILPETDHYACMI 536

Query: 481 DLFARAGCLNEAVNLIEQMPFE-ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           DL+ RA  L + V  ++++P E  D  +  +    C  + +  L ++  E+++ ++ ++ 
Sbjct: 537 DLYGRASQLEKMVLFMQRIPMEHQDAAVVGAFFNACRLNNNTELAKEAEEKLLNIEGDSG 596

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
             Y+QL++++A  G W +   IR  MR K   K  GCSW
Sbjct: 597 ARYVQLANVYAAEGNWAEMGRIRREMRGKEAKKFAGCSW 635



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 185/347 (53%), Gaps = 12/347 (3%)

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           + +L+ G   H   + +G     +  + LV+LY K    N A ++ + M + + +  + +
Sbjct: 1   MRSLKDGLMRHVRSIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTI 60

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS-NNEDTEALLLFHKMR--RNGVL 234
           IS +     +  A+ +FD  +    V +NSM+SGY+S +  +  AL LF +M+  RN + 
Sbjct: 61  ISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERNALELFVEMQSIRNEIE 120

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D  T+ S+++  S L    +G+Q+H +  K G      V S+L+D YSK G   +AC++
Sbjct: 121 IDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQV 180

Query: 295 FSELKV---YDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSP 350
           F   +    +D +  N M+  Y   G +E A  +F R       +SWN++I G  QNG P
Sbjct: 181 FKGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYP 240

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
           +EAL LF  M +  ++ ++ +  SV+SACA++ +L++G+++ A +   GL S   + + +
Sbjct: 241 VEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGI 300

Query: 411 VDFYCKCG----YDALALFNEMRNT-GVKPTIITFTAILSACDHCGL 452
           VD YCKCG     ++L L   +R++  +   I+ F++  +  + C L
Sbjct: 301 VDVYCKCGNMKYAESLLLTRGVRSSFSITSMIVGFSSQGNMVEACRL 347



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 123/283 (43%), Gaps = 66/283 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++ +GK++H   LK G L S+  + + ++ +Y +CGN   A  L      R
Sbjct: 265 VLSACADLRNLKIGKEMHAWILKNG-LGSSAFVESGIVDVYCKCGNMKYAESLLLTRGVR 323

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------------- 115
           + FS  +MI GF   G+  ++ +LF+ + +KN   W  L SG+ K               
Sbjct: 324 SSFSITSMIVGFSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFELLREYI 383

Query: 116 -------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
                              A  AAL  GKQIH ++   G++ D    ++++++Y KCG  
Sbjct: 384 AKEAAIPDALILISAFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSI 443

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
             A +                               +F +  +   V++N M++GY  + 
Sbjct: 444 PYAEK-------------------------------LFLKVIERDLVLYNVMLAGYAHHG 472

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            + +A+ LF +M   GV  DA T  ++LSAC   G ++ G++ 
Sbjct: 473 HEIKAINLFQEMLERGVGPDAVTFVALLSACRHRGLVDLGEKT 515


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 202/767 (26%), Positives = 327/767 (42%), Gaps = 219/767 (28%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC------ 54
           M+T+  YLA LLQ+C    +   GK +H H L+  + + T  ++NRL++ Y +C      
Sbjct: 1   METKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTF-LSNRLIEFYAKCNAIDAS 59

Query: 55  -------------------------GNPTDALLLFDEMPRRNCFSWNAMIEGFMK----- 84
                                        DA +LF EMP RN  SWN +I    +     
Sbjct: 60  RRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACG 119

Query: 85  ------------------------------LGHKEK------SLQLFNVMPQKNDFSWNM 108
                                         LG   K      ++Q F  +P+ N+ S+  
Sbjct: 120 ALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTA 179

Query: 109 LISGFAKAD-----------------------------------------------LAAL 121
           ++ G A +D                                               L++ 
Sbjct: 180 MMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSD 239

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
            +G+Q+H   + +G + D  L +SL+++Y K G+ +SA  +   M E      + +I+GY
Sbjct: 240 VHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGY 299

Query: 182 AN-----------------------------------CGKMNDARRVFDRTTDTSSVMWN 206
                                                 G +   R++FD  +  S   WN
Sbjct: 300 GQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWN 359

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           +++SGY  N    EA+ LF +M+   V  D +TLA +LS+ + +  LE G+QVH  + K 
Sbjct: 360 TILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKA 419

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
               D+ +AS L+  YSK                               CG++E AK IF
Sbjct: 420 VFRTDIYLASGLIGMYSK-------------------------------CGKVEMAKRIF 448

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             +    ++ WNSM+ GLS N    EA   F  M +  +   +FS A+V+S CA +SSL 
Sbjct: 449 DRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLS 508

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------- 419
            G QV +++   G  +D  + ++L+D Y KCG                            
Sbjct: 509 QGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYA 568

Query: 420 ------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
                 +A+ L+ +M  +G KP  ITF A+L+AC H GLV  G K F++M+ ++ ++P +
Sbjct: 569 QNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLV 628

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           +HY+C++D   RAG L+EA  LI++MP + D  +W  +L  C  + D  L R+ AE +  
Sbjct: 629 DHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFH 688

Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           LDP+N+  Y+ L++I+++ G W+ +  +R++M    V K PG SW +
Sbjct: 689 LDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIE 735


>gi|115474659|ref|NP_001060926.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|42408463|dbj|BAD09644.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50725835|dbj|BAD33365.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622895|dbj|BAF22840.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|215704880|dbj|BAG94908.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215712334|dbj|BAG94461.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 674

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 179/595 (30%), Positives = 285/595 (47%), Gaps = 69/595 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y   G+   A L+FD+MPRRN  SWNA++  +++      +  LF  MP KN  S+
Sbjct: 75  LLTAYADGGDLASARLVFDDMPRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSY 134

Query: 107 NMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
             +ISG AKA++  L   + ++  +     D   V  ++L+  Y + G+   A +V   M
Sbjct: 135 GAIISGLAKAEM--LHEAELVYEEMPWQWRD--PVGSNALMAGYLRVGELAMALRVFEGM 190

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
              D    SA++ G    G +++ARRVFD   + + V W SMI GY+      + LLLF 
Sbjct: 191 TVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFL 250

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            MRR GV  + +TL+  L AC++      G Q+H     +G   D+ +  +++  YS+ G
Sbjct: 251 NMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFG 310

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
              DA + F  ++  D +  N++IT Y     +E+A  +F+ M  K  +SW SM+VG + 
Sbjct: 311 WMVDAKRAFDCMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFAN 370

Query: 347 -------------------------------NGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                                          NG  + A+  FC M++   + +  + + +
Sbjct: 371 RGWMRESVELFEQMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCL 430

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
           +SA A+++ L  G Q  A    +G   D  + TSLV  Y KCG                 
Sbjct: 431 LSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSL 490

Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                            DAL LF +M+N G KP  +TF  IL+ C   G V++G  +F++
Sbjct: 491 IAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFES 550

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           M+  Y ++P  EHY+CMVDL  RAG L EA+ +I  MP       W+++L     H +  
Sbjct: 551 MRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLA 610

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
             +  A++++E DP +A AY  LS +F+++G  E   +++ +       K PG S
Sbjct: 611 FAKIAAQKLLEKDPYDATAYTVLSRMFSSAGM-EDEEMLKVVQLSNLASKRPGYS 664



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 190/452 (42%), Gaps = 98/452 (21%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N L+  Y+R G    AL +F+ M  R+  SW+AM++G  K G   ++ ++F+ MP++N 
Sbjct: 167 SNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERNV 226

Query: 104 FSWNMLISGFAK---------------------------------ADLAALEYGKQIHSH 130
            SW  +I G+ K                                 A  +    G QIH+ 
Sbjct: 227 VSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNL 286

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY--------- 181
           I+  G + D  LG S++ +Y + G    A +  + M++ D    ++LI+GY         
Sbjct: 287 IISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQHDMVEEA 346

Query: 182 ----------------------ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
                                 AN G M ++  +F++      V W ++IS +I+N +  
Sbjct: 347 HVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSFITNGDYL 406

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
            A+  F +M + G   +    + +LSA +SL  L  G+Q H ++  +G + D  V ++L+
Sbjct: 407 SAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLV 466

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
             Y+K G  ++A  +FS +     I +N+MIT +   G +ED                  
Sbjct: 467 SMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVED------------------ 508

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TII 398
                        AL LF  M     + +  +   +++ CA    ++ G   F  +  + 
Sbjct: 509 -------------ALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVY 555

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEM 428
           G++ +    T +VD   + G   +AL + N M
Sbjct: 556 GVEPNPEHYTCMVDLLGRAGLLAEALEMINSM 587



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 176/376 (46%), Gaps = 41/376 (10%)

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--- 230
           L+AL++ Y   G++ DA+ +FD+      + W ++++ Y    +   A L+F  M R   
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 231 ---NGVL---------------------EDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
              N +L                     ++A +  +++S  +    L   + V+      
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP-- 158

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
               D + ++AL+  Y + G  + A ++F  + V D I  + M+      G + +A+ +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             MP ++++SW SMI G  + G   + L LF NM +  ++++  +L+  + ACA  S   
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAR 278

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAIL 444
            G Q+   +  +G + D  +  S++  Y + G+  DA   F+ M+    +  I+++ +++
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQ----QKDIVSWNSLI 334

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           +      +V+E    F  M  +  +      ++ MV  FA  G + E+V L EQMP + +
Sbjct: 335 TGYVQHDMVEEAHVLFKLMHQKDAVS-----WTSMVVGFANRGWMRESVELFEQMPVKDE 389

Query: 505 VGMWSSILRGCVAHGD 520
           V  W++I+   + +GD
Sbjct: 390 VA-WTAIISSFITNGD 404



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 147/330 (44%), Gaps = 37/330 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L +C        G Q+H   +  G     + + + ++ MY R G   DA   FD M
Sbjct: 264 LSVALDACAAASLAREGIQIHNLIISMG-FELDIFLGDSIIIMYSRFGWMVDAKRAFDCM 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
            +++  SWN++I G+++    E++  LF +M QK+  SW  ++ GFA       ++E  +
Sbjct: 323 QQKDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFE 382

Query: 126 Q-----------IHSHILVNGLDF-----------------DSVLGSSLVNLYGKCGDFN 157
           Q           I S  + NG D+                 +++  S L++        N
Sbjct: 383 QMPVKDEVAWTAIISSFITNG-DYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLN 441

Query: 158 SANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
              Q     +NM    D    ++L+S YA CG++ +A  VF   ++ S +  NSMI+ ++
Sbjct: 442 QGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFV 501

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDV 272
            +    +AL LF KM+  G   +  T   +L+ C+  GF++ G         V GV  + 
Sbjct: 502 QHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNP 561

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYD 302
              + ++D   + G+ ++A ++ + +   D
Sbjct: 562 EHYTCMVDLLGRAGLLAEALEMINSMPQND 591


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 187/610 (30%), Positives = 299/610 (49%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +  + +    +  GKQ H   +K G  +  + + + LL MY + G   DA  LFD M
Sbjct: 121 LAGVFSAASNLSDVVAGKQAHSVAVKTGC-SGDVYVGSSLLNMYCKTGFVFDARKLFDRM 179

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
           P RN  SW  MI G+      +K++++F +M +    +N+F+   ++S    +D+     
Sbjct: 180 PERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALT-SDVFVYT- 237

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+HS  + NGL        ++V++         AN               AL++ YA 
Sbjct: 238 GRQVHSLAIKNGL-------LAIVSV---------AN---------------ALVTMYAK 266

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG ++DA R F+ + D +S+ W++M++GY    +  +AL LF+KM  +GVL    TL  V
Sbjct: 267 CGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGV 326

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           ++ACS L  +  GKQ+H  A K+G    + V SA++D Y+K                   
Sbjct: 327 INACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAK------------------- 367

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       CG + DA+  F  +    ++ W S+I G  QNG     L+L+  M   
Sbjct: 368 ------------CGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQME 415

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            +  ++ ++ASV+ AC+++++L+ G+Q+ AR+   G   +  I ++L   Y KCG     
Sbjct: 416 RVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDG 475

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         AL LF +M   G+KP  +TF  +LSAC H 
Sbjct: 476 YLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHM 535

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV  G ++F  M  +++I P +EHY+CMVD+ +RAG LNEA   IE    +  + +W  
Sbjct: 536 GLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRI 595

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  LG    E+++EL    + AY+ LSSI+   G+ E    +R IM+ + V
Sbjct: 596 LLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRENVERVRRIMKARGV 655

Query: 571 GKLPGCSWAD 580
            K PGCSW +
Sbjct: 656 NKEPGCSWIE 665



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 142/574 (24%), Positives = 240/574 (41%), Gaps = 118/574 (20%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L  C  + +I  G+ LH   LK G + S++ + N  L +Y +  + + AL LFD +   +
Sbjct: 18  LIECTHNKNILKGRTLHARILKTGSI-SSIYVTNTFLNLYAKTNHLSHALTLFDSINDND 76

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF------------------ 113
                                        K+D SWN LI+ F                  
Sbjct: 77  -----------------------------KDDVSWNSLINAFSQNHSSSSSSFAISLFRR 107

Query: 114 -------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                              A ++L+ +  GKQ HS  +  G   D  +GSSL+N+Y K G
Sbjct: 108 MMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTG 167

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
               A ++ + M E +    + +ISGYA+    + A  VF+                   
Sbjct: 168 FVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFEL------------------ 209

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
                        MRR   +++   L SVLSA +S  F+  G+QVH  A K G++  V V
Sbjct: 210 -------------MRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSV 256

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           A+AL+  Y+K G   DA + F      ++I  + M+T Y+  G  + A  +F  M +  +
Sbjct: 257 ANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGV 316

Query: 335 ISWNSMIVGL----SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
           +     +VG+    S   + +E   +     KL   +  + L++V+   A   SL    +
Sbjct: 317 LPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARK 376

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCG-YD-ALALFNEMRNTGVKPTIITFTAILSACD 448
            F  V       D ++ TS++  Y + G Y+  L L+ +M+   V P  +T  ++L AC 
Sbjct: 377 GFECVQ----QPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACS 432

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
               + +G K   A   +Y    E+   S +  ++ + G L++   +  +MP   DV  W
Sbjct: 433 SLAALDQG-KQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMP-SRDVISW 490

Query: 509 SSILRGCV--AHGDKGLGRKVAERM----IELDP 536
           ++++ G     HG+K L  ++ E+M    I+ DP
Sbjct: 491 NAMISGLSQNGHGNKAL--ELFEKMLLEGIKPDP 522


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 172/610 (28%), Positives = 294/610 (48%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL +C +   +  G QLH +  K GI +S   +   LL +Y++CG+   AL++F+  
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGI-SSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
            R N   WN M+  F ++    KS +LF  M     + N F++  ++          ++ 
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTR--EIDL 363

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIHS  +  G + D  +   L+++Y K                               
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKY------------------------------ 393

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G +  ARRV +   +   V W SMI+GY+ +    +AL  F +M++ G+  D   LAS 
Sbjct: 394 -GWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASA 452

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +S C+ +  +  G Q+H              A   +  YS                  D 
Sbjct: 453 ISGCAGINAMRQGLQIH--------------ARIYVSGYSG-----------------DV 481

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
            + N ++ +Y+ CGRI +A   F  + +K  I+WN ++ G +Q+G   EAL +F  M++ 
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQS 541

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            ++ + F+  S +SA AN++ ++ G+Q+ ARV   G   +  +  +L+  Y KCG     
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF++M+  G+KP  +TF  +L+AC H 
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG  +F +M  +Y I P  +HY+C++D+F RAG L+ A   IE+MP  AD  +W +
Sbjct: 662 GLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRT 721

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +G   A+ ++EL+P ++ +Y+ LS+ +A + +W     +R +MR++ V
Sbjct: 722 LLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGV 781

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 782 RKEPGRSWIE 791



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 143/551 (25%), Positives = 239/551 (43%), Gaps = 101/551 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L SC        G+ +H    K G   S + + N ++ +Y+RCG+   A  +F +M
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFC-SEIFVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGK 125
           P R+  ++N +I G  + GH E +L++F  M         + IS    A A L  L+ G 
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+HS++   G+  D ++  SL++LY KCGD                   +AL+       
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVE-----------------TALV------- 300

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                  +F+ +  T+ V+WN M+  +   N+  ++  LF +M+  G+  +  T   +L 
Sbjct: 301 -------IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILR 353

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            C+    ++ G+Q+H  + K G   D+ V+  L+D YSK G    A ++   LK      
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK------ 407

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                     K ++SW SMI G  Q+    +AL  F  M K  +
Sbjct: 408 -------------------------EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGI 442

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             D   LAS IS CA I+++  G Q+ AR+ + G   D  I  +LV+ Y +CG       
Sbjct: 443 WPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFS 502

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +AL +F  M  +GVK  + TF + LSA  +   
Sbjct: 503 SFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAE 562

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           +K+G++    +    H   E E  + ++ L+ + G   +A     +M    +V  W++I+
Sbjct: 563 IKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS-WNTII 620

Query: 513 RGCVAHGDKGL 523
             C  HG +GL
Sbjct: 621 TSCSQHG-RGL 630



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/547 (24%), Positives = 235/547 (42%), Gaps = 104/547 (19%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            V  ++H   + +G L     + N L+ +Y + G    A  +F+E+  R+  SW AM+ G
Sbjct: 59  QVVPEIHAKAVTRG-LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 82  FMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           + + G  E++L L+  M +       +  + ++S   KA+L A   G+ IH+    +G  
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFA--QGRLIHAQGYKHGF- 174

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
                          C +                F  +A+I+ Y  CG    A RVF   
Sbjct: 175 ---------------CSEI---------------FVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
               +V +N++ISG+        AL +F +M+ +G+  D  T++S+L+AC+SLG L+ G 
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           Q+H +  K G+  D I+  +LLD Y K                               CG
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVK-------------------------------CG 293

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            +E A  IF +    +++ WN M+V   Q     ++ +LFC M    +R ++F+   ++ 
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILR 353

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------ 419
            C     ++LGEQ+ +     G +SD  +S  L+D Y K G+                  
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 420 ---------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                          DALA F EM+  G+ P  I   + +S C     +++G +   A  
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARI 472

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
           +      ++  ++ +V+L+AR G + EA +  E++  + ++  W+ ++ G    G     
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEI-TWNGLVSGFAQSGLHEEA 531

Query: 525 RKVAERM 531
            KV  RM
Sbjct: 532 LKVFMRM 538



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 203/491 (41%), Gaps = 106/491 (21%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGK- 125
           M RR   S    + GF+      K L LF    +++     +    FA A  A    G+ 
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHG---GLGPLDFACALRACRGNGRR 57

Query: 126 -----QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
                +IH+  +  GL    ++G+ L++LY K G    A +V   +   D+    A++SG
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA                                N    EAL L+ +M R GV+     L
Sbjct: 118 YAQ-------------------------------NGLGEEALGLYRQMHRAGVVPTPYVL 146

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SVLS+C+       G+ +H    K G   ++ V +A++  Y + G    A ++F ++  
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            DT+  NT+I+ ++ CG  E A  IF  M    L              SP          
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL--------------SP---------- 242

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                  D  +++S+++ACA++  L+ G Q+ + +   G+ SD I+  SL+D Y KCG  
Sbjct: 243 -------DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDV 295

Query: 419 YDALALFN-------------------------------EMRNTGVKPTIITFTAILSAC 447
             AL +FN                               +M+  G++P   T+  IL  C
Sbjct: 296 ETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
                +  G++   ++  +   + ++     ++D++++ G L +A  ++E +  E DV  
Sbjct: 356 TCTREIDLGEQ-IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK-EKDVVS 413

Query: 508 WSSILRGCVAH 518
           W+S++ G V H
Sbjct: 414 WTSMIAGYVQH 424


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 172/610 (28%), Positives = 294/610 (48%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL +C +   +  G QLH +  K GI +S   +   LL +Y++CG+   AL++F+  
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGI-SSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
            R N   WN M+  F ++    KS +LF  M     + N F++  ++          ++ 
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTR--EIDL 363

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIHS  +  G + D  +   L+++Y K                               
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKY------------------------------ 393

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G +  ARRV +   +   V W SMI+GY+ +    +AL  F +M++ G+  D   LAS 
Sbjct: 394 -GWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASA 452

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +S C+ +  +  G Q+H              A   +  YS                  D 
Sbjct: 453 ISGCAGINAMRQGLQIH--------------ARIYVSGYSG-----------------DV 481

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
            + N ++ +Y+ CGRI +A   F  + +K  I+WN ++ G +Q+G   EAL +F  M++ 
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQS 541

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            ++ + F+  S +SA AN++ ++ G+Q+ ARV   G   +  +  +L+  Y KCG     
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF++M+  G+KP  +TF  +L+AC H 
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG  +F +M  +Y I P  +HY+C++D+F RAG L+ A   IE+MP  AD  +W +
Sbjct: 662 GLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRT 721

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +G   A+ ++EL+P ++ +Y+ LS+ +A + +W     +R +MR++ V
Sbjct: 722 LLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGV 781

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 782 RKEPGRSWIE 791



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 145/552 (26%), Positives = 243/552 (44%), Gaps = 103/552 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L SC        G+ +H    K G   S + + N ++ +Y+RCG+   A  +F +M
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFC-SEIFVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-MLISGF--AKADLAALEYG 124
           P R+  ++N +I G  + GH E +L++F  M Q +  S + + IS    A A L  L+ G
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEM-QFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
            Q+HS++   G+  D ++  SL++LY KCGD                   +AL+      
Sbjct: 264 TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVE-----------------TALV------ 300

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                   +F+ +  T+ V+WN M+  +   N+  ++  LF +M+  G+  +  T   +L
Sbjct: 301 --------IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCIL 352

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
             C+    ++ G+Q+H  + K G   D+ V+  L+D YSK G    A ++   LK     
Sbjct: 353 RTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK----- 407

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                                      K ++SW SMI G  Q+    +AL  F  M K  
Sbjct: 408 --------------------------EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           +  D   LAS IS CA I+++  G Q+ AR+ + G   D  I  +LV+ Y +CG      
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +AL +F  M  +GVK  + TF + LSA  +  
Sbjct: 502 SSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLA 561

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            +K+G++    +    H   E E  + ++ L+ + G   +A     +M    +V  W++I
Sbjct: 562 EIKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS-WNTI 619

Query: 512 LRGCVAHGDKGL 523
           +  C  HG +GL
Sbjct: 620 ITSCSQHG-RGL 630



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/547 (24%), Positives = 235/547 (42%), Gaps = 104/547 (19%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            V  ++H   + +G L     + N L+ +Y + G    A  +F+E+  R+  SW AM+ G
Sbjct: 59  QVVPEIHAKAVTRG-LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 82  FMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           + + G  E++L L+  M +       +  + ++S   KA+L A   G+ IH+    +G  
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFA--QGRLIHAQGYKHGF- 174

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
                          C +                F  +A+I+ Y  CG    A RVF   
Sbjct: 175 ---------------CSEI---------------FVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
               +V +N++ISG+        AL +F +M+ +G+  D  T++S+L+AC+SLG L+ G 
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           Q+H +  K G+  D I+  +LLD Y K                               CG
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVK-------------------------------CG 293

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            +E A  IF +    +++ WN M+V   Q     ++ +LFC M    +R ++F+   ++ 
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILR 353

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------ 419
            C     ++LGEQ+ +     G +SD  +S  L+D Y K G+                  
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 420 ---------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                          DALA F EM+  G+ P  I   + +S C     +++G +   A  
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARI 472

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
           +      ++  ++ +V+L+AR G + EA +  E++  + ++  W+ ++ G    G     
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEI-TWNGLVSGFAQSGLHEEA 531

Query: 525 RKVAERM 531
            KV  RM
Sbjct: 532 LKVFMRM 538



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 203/491 (41%), Gaps = 106/491 (21%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGK- 125
           M RR   S    + GF+      K L LF    +++     +    FA A  A    G+ 
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHG---GLGPLDFACALRACRGNGRR 57

Query: 126 -----QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
                +IH+  +  GL    ++G+ L++LY K G    A +V   +   D+    A++SG
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA                                N    EAL L+ +M R GV+     L
Sbjct: 118 YAQ-------------------------------NGLGEEALGLYRQMHRAGVVPTPYVL 146

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SVLS+C+       G+ +H    K G   ++ V +A++  Y + G    A ++F ++  
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            DT+  NT+I+ ++ CG  E A  IF  M    L              SP          
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL--------------SP---------- 242

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                  D  +++S+++ACA++  L+ G Q+ + +   G+ SD I+  SL+D Y KCG  
Sbjct: 243 -------DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDV 295

Query: 419 YDALALFN-------------------------------EMRNTGVKPTIITFTAILSAC 447
             AL +FN                               +M+  G++P   T+  IL  C
Sbjct: 296 ETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
                +  G++   ++  +   + ++     ++D++++ G L +A  ++E +  E DV  
Sbjct: 356 TCTREIDLGEQ-IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK-EKDVVS 413

Query: 508 WSSILRGCVAH 518
           W+S++ G V H
Sbjct: 414 WTSMIAGYVQH 424


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 186/609 (30%), Positives = 303/609 (49%), Gaps = 79/609 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN---PTDALLLFDEM 67
           LL +C T  S+ +   +H   +K G+ N+   ++ +L++  +   +    T A+ +FD +
Sbjct: 8   LLHNCKTLQSLRI---IHAKMIKTGLHNTNYALS-KLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
              N   WN M  G         +L L+  M       N +++  L+   AK+   A   
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSK--AFRE 121

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH H+L  G D D  + +SL+ +Y K G    A +V +     D    +ALI GYA+
Sbjct: 122 GQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYAS 181

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G +  A+++FD       V WN++ISGY       EAL LF +M +  V  D ST+ +V
Sbjct: 182 NGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTV 241

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSAC+    +E G+QVH        IDD              G  S+       LK+   
Sbjct: 242 LSACAQSASIELGRQVHS------WIDD-------------HGFGSN-------LKI--- 272

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
             +N +I +Y  CG +E A  +F  +  K +ISWN++I G +      EAL LF  M + 
Sbjct: 273 --VNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 330

Query: 364 DLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
               ++ ++ S++ ACA++ ++++G    V+    + G+ +   + TSL+D Y KCG   
Sbjct: 331 GESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIE 390

Query: 419 -----YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACD 448
                +D                         A  +F+ MR  G++P  ITF  +LSAC 
Sbjct: 391 AAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACS 450

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H G++  G+  F +M   Y I P++EHY CM+DL   +G   EA  +I  M  + D  +W
Sbjct: 451 HSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIW 510

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            S+L+ C  HG+  LG   A+ +I+++P+N+ +Y+ LS+I+AT+G W + +  R ++ +K
Sbjct: 511 CSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDK 570

Query: 569 HVGKLPGCS 577
            + K+PGCS
Sbjct: 571 GMKKVPGCS 579


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 182/608 (29%), Positives = 295/608 (48%), Gaps = 100/608 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              ++++C     I +G+QLH H +K G  +  L   N L+ MY R G    A  +F  +
Sbjct: 261 FGSIIKACCIAGDIDLGRQLHGHVIKSG-YDHHLIAQNALISMYTRFGQIVHASDVFTMI 319

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF---AKADLAALEYG 124
             ++  SW +MI GF +LG++ ++L LF  M ++  +  N  I G    A   L   E+G
Sbjct: 320 STKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFG 379

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +QIH      GL  +   G SL ++Y K G   SA +    ++ PD      L+S     
Sbjct: 380 RQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPD------LVS----- 428

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                               WN++I+ +  + +  EA+  F +M   G++ D  T  S+L
Sbjct: 429 --------------------WNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLL 468

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC S   +  G Q+H +  K+G+  +  V                              
Sbjct: 469 CACGSPVTINQGTQIHSYIIKIGLDKEAAVC----------------------------- 499

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
             N+++T+Y+ C  + DA ++F+ +  N +L+SWN+++    Q+    E   LF  M   
Sbjct: 500 --NSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFS 557

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
           + + D  ++ +++  CA ++SLE+G QV       GL  D  +S  L+D Y KCG     
Sbjct: 558 ENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHA 617

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                       ++AL LF  M+N GV+P  +T+  +LSAC H 
Sbjct: 618 RDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHI 677

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG  +++ M+ +  I P  EH SCMVDL ARAGCL EA N I++M F  D+ MW +
Sbjct: 678 GLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKT 737

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  HG+  +  + AE +++LDP N+ A + LS+I A+ G W++ + +R++M++  V
Sbjct: 738 LLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARLRNLMKQMGV 797

Query: 571 GKLPGCSW 578
            K+PG SW
Sbjct: 798 QKVPGQSW 805



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 195/442 (44%), Gaps = 71/442 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C +  S+  GK++H H LK       L + N +L MY +CG+  DA   FD M  R
Sbjct: 163 LILACTSIRSLKYGKKIHDHILKSNC-QPDLVLQNHILNMYGKCGSLKDARKAFDTMQLR 221

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIH 128
           N  SW  MI G+ + G +  ++ ++  M Q   F   +      KA   A  ++ G+Q+H
Sbjct: 222 NVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLH 281

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            H++ +G D   +  ++L+++Y + G    A+ V  M+   D      LIS         
Sbjct: 282 GHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKD------LIS--------- 326

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSAC 247
                           W SMI+G+     + EAL LF  M R G  + +     SV SAC
Sbjct: 327 ----------------WASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSAC 370

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
            SL   E G+Q+HG   K G+  +V    +L D Y+K G    A + F +++  D +  N
Sbjct: 371 RSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWN 430

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            +I  +S  G +                                EA+  FC M    L  
Sbjct: 431 AIIAAFSDSGDVN-------------------------------EAIYFFCQMMHTGLMP 459

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALF 425
           D  +  S++ AC +  ++  G Q+ + +  IGLD +  +  SL+  Y KC   +DA   F
Sbjct: 460 DGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDA---F 516

Query: 426 NEMRNTGVKPTIITFTAILSAC 447
           N  ++      ++++ AILSAC
Sbjct: 517 NVFKDVSENANLVSWNAILSAC 538



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 127/520 (24%), Positives = 217/520 (41%), Gaps = 104/520 (20%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG---FAKADLAALEYGKQIHS 129
            S N+ I    K  H  ++L  FN  P+ +         G    A   + +L+YGK+IH 
Sbjct: 122 LSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHD 181

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
           HIL +    D VL + ++N+YGK                               CG + D
Sbjct: 182 HILKSNCQPDLVLQNHILNMYGK-------------------------------CGSLKD 210

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR+ FD     + V W  MISGY  N ++ +A++++ +M ++G   D  T  S++ AC  
Sbjct: 211 ARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCI 270

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
            G ++ G+Q+HGH  K G    +I  +AL+  Y++ G    A  +F+ +   D I   +M
Sbjct: 271 AGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASM 330

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT ++  G   +A ++FR M  +     N  I G                          
Sbjct: 331 ITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFG-------------------------- 364

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------- 419
               SV SAC ++   E G Q+       GL  +     SL D Y K G+          
Sbjct: 365 ----SVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQ 420

Query: 420 -----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +A+  F +M +TG+ P  ITF ++L AC     + +G
Sbjct: 421 IESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQG 480

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            +   +   +  +D E    + ++ ++ +   L++A N+ + +   A++  W++IL  C+
Sbjct: 481 TQ-IHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACL 539

Query: 517 AHGDKGLGRKVAERMI--ELDPENACAYIQLSSIFATSGE 554
            H   G   ++ + M+  E  P+N    I +++I  T  E
Sbjct: 540 QHKQAGEVFRLFKLMLFSENKPDN----ITITTILGTCAE 575


>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
          Length = 829

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 190/644 (29%), Positives = 309/644 (47%), Gaps = 112/644 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FDE+P R  
Sbjct: 176 KACGALQWSRFGRGVHGYVAKAG-LHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTV 234

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  +++++L + M  +      + +S    A A++  +E GKQ H+ 
Sbjct: 235 VAWNALMVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGIEEGKQSHAI 294

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNGL+ D++LG+S++N Y K G                                +  A
Sbjct: 295 AIVNGLELDNILGTSILNFYCKVG-------------------------------LIEYA 323

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
             +FDR  +   V WN +ISGY+      +A+ +   MRR  +  D  TL+S++SA +  
Sbjct: 324 EMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAART 383

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK+V  +  + G + D+++AS  ++ Y+K G   DA K+F+     D IL NT++
Sbjct: 384 HNLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLL 443

Query: 311 TVYSSCG-----------------------------------RIEDAKHIFRTM------ 329
             Y+  G                                   ++ +AK +F  M      
Sbjct: 444 AAYAEPGLSGEALRLFYEMQLEGVPPNVITWNSVILSLLRNGQVNEAKDMFLQMQSSGIS 503

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  LISW +M+ GL QNG   EA+     M +  LR++ FS+   +SACAN++SL  G 
Sbjct: 504 PN--LISWTTMMNGLVQNGCSEEAIVYLRKMQESGLRLNVFSITVALSACANLASLHFGR 561

Query: 390 QVFARVTIIGLDSDQI-ISTSLVDFYCKCG-------------YDALALFNEM------- 428
            +   +      S  + I TSLVD Y KCG             Y  L L+N M       
Sbjct: 562 SIHGYIIRNQHHSSSVSIETSLVDMYAKCGDISKAERVFGSKLYSELPLYNAMISAYALY 621

Query: 429 --------------RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                          + G++P  IT T +LSAC H G + +    F  M  ++ + P +E
Sbjct: 622 GNVKEATALYRSLDEDVGIEPDNITITNVLSACHHAGDINQAIHIFTDMVSKHAMKPCLE 681

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           HY  MVDL A AG   +A+ LIE+MP++ D  M  S+L  C       L   ++  ++E 
Sbjct: 682 HYGLMVDLLASAGETEKALRLIEEMPYKPDARMIQSLLASCNKQHKSELVEYLSRHLLES 741

Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +PEN+  Y+ +S+++A  G W++   +R++M+ K + K PGCSW
Sbjct: 742 EPENSGNYVTISNVYAVEGSWDEVGKMREMMKVKGLKKKPGCSW 785



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 137/559 (24%), Positives = 238/559 (42%), Gaps = 106/559 (18%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LK G        I  +L+  Y +C     A LLF ++
Sbjct: 69  GEILQGCVYERDLSTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKL 128

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             RN FSW A+I    ++G  E +L  F  M +   F  N ++    KA   L    +G+
Sbjct: 129 RARNVFSWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGR 188

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H ++   GL     + SSL ++YGKCG  + A                          
Sbjct: 189 GVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDA-------------------------- 222

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                R+VFD   D + V WN+++ GY+ N  + EA+ L   MR  G+     T+++ LS
Sbjct: 223 -----RKVFDEIPDRTVVAWNALMVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLS 277

Query: 246 ACSSLGFLEHGKQVHGHA-------------------CKVGVID------------DVIV 274
           A +++G +E GKQ H  A                   CKVG+I+            DV+ 
Sbjct: 278 ASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVT 337

Query: 275 ASALLDTYSKRGMPSDAC-------------------------------KLFSELKVY-- 301
            + L+  Y ++G+  DA                                KL  E++ Y  
Sbjct: 338 WNLLISGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCI 397

Query: 302 ------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                 D +L +T + +Y+ CG I DAK +F +   K LI WN+++   ++ G   EAL 
Sbjct: 398 RHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSGEALR 457

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  M    +  +  +  SVI +      +   + +F ++   G+  + I  T++++   
Sbjct: 458 LFYEMQLEGVPPNVITWNSVILSLLRNGQVNEAKDMFLQMQSSGISPNLISWTTMMNGLV 517

Query: 416 K--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
           +  C  +A+    +M+ +G++  + + T  LSAC +   +  G+     +    H    +
Sbjct: 518 QNGCSEEAIVYLRKMQESGLRLNVFSITVALSACANLASLHFGRSIHGYIIRNQHHSSSV 577

Query: 474 EHYSCMVDLFARAGCLNEA 492
              + +VD++A+ G +++A
Sbjct: 578 SIETSLVDMYAKCGDISKA 596



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 125/523 (23%), Positives = 218/523 (41%), Gaps = 116/523 (22%)

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-----DFSWNMLISGFAKADLA 119
           DE       S+   +    K G   ++L L   M  +N     +    +L     + DL+
Sbjct: 23  DEAGNPPSISYFHRVSSLCKKGEIREALGLVTEMGSRNVRIGPEIYGEILQGCVYERDLS 82

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
               G+QIH+ IL NG                   DF + N+ +           + L+ 
Sbjct: 83  T---GQQIHARILKNG-------------------DFYAKNEYIE----------TKLVI 110

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            YA C  +  A+ +F +    +   W ++I           AL+ F +M  NG+  D   
Sbjct: 111 FYAKCDALEVAQLLFSKLRARNVFSWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFV 170

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           + +V  AC +L +   G+ VHG+  K G+ D V VAS+L D Y K G+  DA K+F E+ 
Sbjct: 171 VPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEI- 229

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                                         P++++++WN+++VG  QNG   EA+ L   
Sbjct: 230 ------------------------------PDRTVVAWNALMVGYVQNGMNQEAIRLLSA 259

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M    +   + ++++ +SA AN+  +E G+Q  A   + GL+ D I+ TS+++FYCK G 
Sbjct: 260 MRNEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGL 319

Query: 420 DALA--LFNEMRNTGVKPTIITFTAILS----------ACDHCGLVKEGQKWFD------ 461
              A  +F+ M    ++  ++T+  ++S          A   C L++ G   FD      
Sbjct: 320 IEYAEMIFDRM----IEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSS 375

Query: 462 -----AMKWQYHIDPEIEHY-------------SCMVDLFARAGCLNEAVNLIEQMPFEA 503
                A      +  E++ Y             S  V+++A+ G + +A  +      E 
Sbjct: 376 LMSAAARTHNLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNS-TVEK 434

Query: 504 DVGMWSSILRGCVAHGDKGLG----RKVAERMIELDPENACAY 542
           D+ +W+++L    A+ + GL     R   E  +E  P N   +
Sbjct: 435 DLILWNTLL---AAYAEPGLSGEALRLFYEMQLEGVPPNVITW 474



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 122/289 (42%), Gaps = 48/289 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L+ +    H++ +GK++  + ++ G + S + +A+  ++MY +CG+  DA  +F+  
Sbjct: 373 LSSLMSAAARTHNLKLGKEVQCYCIRHGFV-SDIVLASTAVEMYAKCGSIVDAKKVFNST 431

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             ++   WN ++  + + G   ++L+LF  M       N  +WN +I    +     +  
Sbjct: 432 VEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLEGVPPNVITWNSVILSLLRN--GQVNE 489

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD--------DFCLS 175
            K +   +  +G+  + +  ++++N   + G    A   L  M+E             LS
Sbjct: 490 AKDMFLQMQSSGISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQESGLRLNVFSITVALS 549

Query: 176 A--------------------------------LISGYANCGKMNDARRVFDRTTDTSSV 203
           A                                L+  YA CG ++ A RVF     +   
Sbjct: 550 ACANLASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDISKAERVFGSKLYSELP 609

Query: 204 MWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLG 251
           ++N+MIS Y       EA  L+  +  + G+  D  T+ +VLSAC   G
Sbjct: 610 LYNAMISAYALYGNVKEATALYRSLDEDVGIEPDNITITNVLSACHHAG 658



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 16/191 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    +S++ I   L+ MY +CG+ + A  +F       
Sbjct: 548 LSACANLASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDISKAERVFGSKLYSE 607

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW-NMLISGFAKADLAALEYGKQIH-- 128
              +NAMI  +   G+ +++  L+  + +       N+ I+    A   A +  + IH  
Sbjct: 608 LPLYNAMISAYALYGNVKEATALYRSLDEDVGIEPDNITITNVLSACHHAGDINQAIHIF 667

Query: 129 -----SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYA 182
                 H +   L+   +    +V+L    G+   A +++  M  +PD   + +L+   A
Sbjct: 668 TDMVSKHAMKPCLEHYGL----MVDLLASAGETEKALRLIEEMPYKPDARMIQSLL---A 720

Query: 183 NCGKMNDARRV 193
           +C K + +  V
Sbjct: 721 SCNKQHKSELV 731


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 189/680 (27%), Positives = 313/680 (46%), Gaps = 141/680 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L++C    ++  G+Q+H   ++ G L+  + +   L+ +Y + G    A+L+FD +
Sbjct: 117 LASALRACAQSRAVSFGQQVHGVAVRIG-LDGNVYVGTALINLYAKVGCIDAAMLVFDAL 175

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P +N  +W A+I G+ ++G    +L+LF  M     + + F     +S  A + L  LE 
Sbjct: 176 PVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVS--ACSALGFLEG 233

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q H +                                  +  E D   ++ALI  Y  
Sbjct: 234 GRQTHGY-------------------------------AYRIAVETDASVINALIDLYCK 262

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C +++ AR++FD   + + V W +MI+GY+ N+ D EA+ +F ++ + G   D    AS+
Sbjct: 263 CSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASI 322

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVI-------------------------------DDV 272
           L++C SL  +  G+QVH HA K  +                                DD 
Sbjct: 323 LNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDA 382

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKV-------------------------------- 300
           I  +A+++ YS+ G  + A  +FS+++                                 
Sbjct: 383 ISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGL 442

Query: 301 -------YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                   D    +++I VYS    +EDAK +F  M N+ ++ WN+MI GL+QN    EA
Sbjct: 443 IVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEA 502

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           + LF  +    L  ++F+  ++++  + + S+  G+Q  A++   G DSD  +S +L+D 
Sbjct: 503 VKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDM 562

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           Y KCG+                                 +AL +F  M  TGV+P  +TF
Sbjct: 563 YAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTF 622

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H GLV EG + FD MK +Y I+P  EHY+ +V+LF R+G L+ A   IE+MP
Sbjct: 623 VGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMP 682

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E    +W S+L  C   G+  +GR   E  +  DP ++   + +S+I+A+ G W  +  
Sbjct: 683 IEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQK 742

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R  M    V K PG SW +
Sbjct: 743 LRQGMDCAGVVKEPGYSWIE 762



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 150/558 (26%), Positives = 256/558 (45%), Gaps = 114/558 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLF 64
           LA+LL SC     +H  + L L    + ++   LP   +AN LL+ Y + G   DA  LF
Sbjct: 13  LAQLLLSCLAGDRLH--RLLPLAH-ARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLF 69

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSWNMLISGF-AKAD 117
           D MP +N  SW + I    + G +E ++ LF    +       N+F   +L S   A A 
Sbjct: 70  DRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEF---LLASALRACAQ 126

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
             A+ +G+Q+H   +  GLD +  +G++L+NLY K G  ++A  V + +   +    +A+
Sbjct: 127 SRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAV 186

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I+GY+  G                               +   AL LF KM  +GV  D 
Sbjct: 187 ITGYSQIG-------------------------------QGGVALELFGKMGLDGVRPDR 215

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
             LAS +SACS+LGFLE G+Q HG+A ++ V  D  V +AL+D Y K             
Sbjct: 216 FVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCK------------- 262

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                             C R+  A+ +F  M N++L+SW +MI G  QN    EA+ +F
Sbjct: 263 ------------------CSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMF 304

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             +++   + D F+ AS++++C +++++  G QV A      L+SD+ +  SL+D Y KC
Sbjct: 305 WQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKC 364

Query: 418 --------------------------GYD-------ALALFNEMRNTGVKPTIITFTAIL 444
                                     GY        A+ +F++MR   +KP+ +TF ++L
Sbjct: 365 EHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLL 424

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
                   + E  K    +  +     ++   S ++D++++   + +A  +   M    D
Sbjct: 425 GVSSSQSAI-ELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLM-HNRD 482

Query: 505 VGMWSSILRGCVAHGDKG 522
           + +W++++ G +A  ++G
Sbjct: 483 MVIWNAMIFG-LAQNEQG 499


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 188/591 (31%), Positives = 301/591 (50%), Gaps = 71/591 (12%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLF 95
           S + + N ++ MY +CG    A  +FD++  R   +  SWN+++  +M       +L LF
Sbjct: 292 SNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALF 351

Query: 96  NVMPQKNDFSWNM--LISGF-AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 152
           + M  ++  S ++  L++   A A LAA   G+Q+H   + +GL  D  +G+++V++Y K
Sbjct: 352 HKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAK 411

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSM 208
           CG    AN+V   MK  D    +A+++GY+  G++  A  +F+R T+ +     V W ++
Sbjct: 412 CGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAV 471

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           I+GY    +  EAL +F +M   G   +  TL S+LSAC S+G L HGK+ H +A K  +
Sbjct: 472 ITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFIL 531

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
             D     A                   +LKV     +N +I +Y+ C   E A+ +F +
Sbjct: 532 NLDGPDPGA------------------DDLKV-----INGLIDMYAKCQSTEVARKMFDS 568

Query: 329 M--PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISS 384
           +   ++ +++W  MI G +Q+G    AL LF  M K+D  ++ + F+L+  + ACA +++
Sbjct: 569 VSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAA 628

Query: 385 LELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG------------------------- 418
           L  G QV A V      S  + ++  L+D Y K G                         
Sbjct: 629 LRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMT 688

Query: 419 --------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
                    DAL +F+EMR   + P  ITF  +L AC H G+V  G  +F+ M   + +D
Sbjct: 689 GYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVD 748

Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAER 530
           P  EHY+CMVDL+ RAG L EA+ LI +MP E    +W ++L  C  H +  LG   A R
Sbjct: 749 PGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANR 808

Query: 531 MIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADG 581
           ++EL+  N  +Y  LS+I+A +  W+  + IR  M+   + K PGCSW  G
Sbjct: 809 LLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQG 859



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 141/329 (42%), Gaps = 41/329 (12%)

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
           + +S   WN +I   +      +   L+ +M+  G   D  T   V  AC++L  L  G 
Sbjct: 220 SPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGA 279

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
            +H    + G   +V V +A++  Y K G    A  +F +L                 C 
Sbjct: 280 SLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDL-----------------CH 322

Query: 318 R-IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASV 375
           R I+D            L+SWNS++           AL LF  M    L   D  SL ++
Sbjct: 323 RGIQD------------LVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNI 370

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGV 433
           + ACA++++   G QV       GL  D  +  ++VD Y KCG   +A  +F  M+   V
Sbjct: 371 LPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDV 430

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
               +++ A+++     G ++     F+ M  + +I+ ++  ++ ++  +A+ G   EA+
Sbjct: 431 ----VSWNAMVTGYSQAGRLEHALSLFERMT-EENIELDVVTWTAVITGYAQRGQGCEAL 485

Query: 494 NLIEQM---PFEADVGMWSSILRGCVAHG 519
           ++  QM       +V    S+L  CV+ G
Sbjct: 486 DVFRQMCDCGSRPNVVTLVSLLSACVSVG 514



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++  G+Q+H + L+    +  L +AN L+ MY + G+   A ++FD MP+RN
Sbjct: 620 LVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRN 679

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKNDFSWNMLISGFAKADLAALEYGKQIH 128
             SW +++ G+   G  E +L++F+ M   P   D     L+  +A +    +++G    
Sbjct: 680 AVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPD-GITFLVVLYACSHSGMVDHGINFF 738

Query: 129 SHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
           + +  + G+D      + +V+L+G+ G    A +++N M  EP      AL+S 
Sbjct: 739 NRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSA 792


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 193/617 (31%), Positives = 286/617 (46%), Gaps = 102/617 (16%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R   +A LL++     S+  G QLH    K G  + T+ + N L+ MY++CG    A  +
Sbjct: 3   RQKMIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTM-LGNNLIDMYVKCGELDLACEV 61

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY 123
           F  M  RN  SW A++ GF++ G     L+L   M   ++ + N              EY
Sbjct: 62  FGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPN--------------EY 107

Query: 124 GKQIHSHILVNGLDFDSVLGSSL--VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
                   L   L    V+G +   V ++G C         +    +  D   S+L+  Y
Sbjct: 108 -------TLSASLKACCVVGDTAAGVGIHGLC---------VRAGYQEHDVVASSLVLVY 151

Query: 182 ANCGKMNDARRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLE--DAS 238
           +  G++ DARRVFD     S +  WN+M+SGY       +ALL+F +MRR+      D  
Sbjct: 152 SKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEF 211

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVG--VIDDVIVASALLDTYSKRGMPSDACKLFS 296
           T AS+L ACS LG    G QVH      G     + I+A AL+D Y K            
Sbjct: 212 TFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVK------------ 259

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                              C R+  A  +F  +  K++I W +++VG +Q G   EAL+L
Sbjct: 260 -------------------CRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALEL 300

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F    +   R D   L+SV+   A+ + +E G QV          +D     S+VD Y K
Sbjct: 301 FRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLK 360

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                  +A+ALF EMR  GV+P  +T+ A+
Sbjct: 361 CGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLAL 420

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC H GLV E +++F  ++    + P+ EHY+CMVDL  RAG L EA +LI  MP E 
Sbjct: 421 LSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEP 480

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
            VG+W ++L  C  H D  +GR+  + ++ +D +N   Y+ LS++ A +GEW +   +RD
Sbjct: 481 TVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRD 540

Query: 564 IMREKHVGKLPGCSWAD 580
            MR + + K  GCSW +
Sbjct: 541 AMRRRGLKKQGGCSWVE 557



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 126/327 (38%), Gaps = 73/327 (22%)

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           +E    +A +L A +    L  G Q+HG   K+G   D ++ + L+D Y K         
Sbjct: 1   MERQKMIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVK--------- 51

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                                 CG ++ A  +F  M +++++SW +++VG  ++G     
Sbjct: 52  ----------------------CGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGC 89

Query: 354 LDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           L L   M    +   ++++L++ + AC  +     G  +       G     ++++SLV 
Sbjct: 90  LRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVL 149

Query: 413 FYCKC----------------------------------GYDALALFNEMR--NTGVKPT 436
            Y K                                   G DAL +F EMR      +P 
Sbjct: 150 VYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPD 209

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQ-YHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
             TF ++L AC   G  +EG +   AM    +           +VD++ +   L  A+ +
Sbjct: 210 EFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQV 269

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKG 522
            E++    +V  W++++   V H  +G
Sbjct: 270 FERLE-RKNVIQWTAVV---VGHAQEG 292


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 178/610 (29%), Positives = 305/610 (50%), Gaps = 45/610 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC       V  QL L  L K        +   L+ M +RCG    A   F  +   
Sbjct: 165 VMKSCGALGWHEVALQL-LGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNP 223

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA--ALEYGKQIH 128
                N+M+ G+ K    + +L++F  MP+++  SWNM+IS  +K+     AL+    +H
Sbjct: 224 TIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMH 283

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALISGYANC 184
                 G+  DS   +S +    +        Q    V+  +   D +  SA++  YA C
Sbjct: 284 G----KGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKC 339

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G   +A+RVF    D +SV W  +I G++     +E++ LF++MR   +  D   LA+++
Sbjct: 340 GCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLI 399

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S C +   +  G Q+H    K G    V+V+++L+  Y+K G   +A  +F+ +   D +
Sbjct: 400 SGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIV 459

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKL 363
               MIT YS  G I  A+  F  M  +++I+WN+M+    Q+G+  + L ++ +M  + 
Sbjct: 460 SWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEK 519

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
           D+  D  +  ++   CA+I + +LG+Q+      +GL  D  +  +++  Y KCG     
Sbjct: 520 DVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEA 579

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         A+ +F+++ N G KP  I++ A+LS C H 
Sbjct: 580 RKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHS 639

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG+ +FD MK  ++I P +EH+SCMVDL  RAG L EA NLI++MP +    +W +
Sbjct: 640 GLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGA 699

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  HG+  L    A+ + +LD   +  Y+ L+ ++A +G+ + S+ +R +MR+K +
Sbjct: 700 LLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGI 759

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 760 KKSPGYSWME 769



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 148/568 (26%), Positives = 260/568 (45%), Gaps = 82/568 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL-LLFDE 66
           LA  L+SC    ++   + LH   +  G L S + + N LL  Y+ CG  +DA  LL DE
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVG-LASVVFLQNTLLHAYLSCGALSDARNLLRDE 86

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYG 124
           +   N  + N M+ G+ KLG    +++LF  MP ++  SWN ++SG+ ++   L AL+  
Sbjct: 87  ITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIF 146

Query: 125 KQIHS--HILVNGLDFDSVLGS------------------------------SLVNLYGK 152
             +      L N   F  V+ S                              +LV++  +
Sbjct: 147 VSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVR 206

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
           CG  + A++  + +K P   C ++++ GYA    ++ A  +F    +   V WN +IS  
Sbjct: 207 CGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISAL 266

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
             +    EAL +   M   GV  D++T  S L+AC+ L  LE GKQ+H    +     D 
Sbjct: 267 SKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDP 326

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            VASA+++ Y+K                               CG  ++AK +F ++ ++
Sbjct: 327 YVASAMVELYAK-------------------------------CGCFKEAKRVFSSLRDR 355

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
           + +SW  +I G  Q G   E+++LF  M    + +D+F+LA++IS C N   + LG Q+ 
Sbjct: 356 NSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLH 415

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
           +     G     ++S SL+  Y KCG   +A  +FN M     +  I+++T +++A    
Sbjct: 416 SLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFM----AERDIVSWTGMITAYSQV 471

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV----G 506
           G + + +++FD M  +  I      ++ M+  + + G   + + +   M  E DV     
Sbjct: 472 GNIAKAREFFDDMSTRNVIT-----WNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWV 526

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIEL 534
            + ++ RGC   G   LG ++    +++
Sbjct: 527 TYVTLFRGCADIGANKLGDQIIGHTVKV 554



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 228/484 (47%), Gaps = 48/484 (9%)

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSAL 177
           +AL   + +HS ++  GL     L ++L++ Y  CG  + A  +L + + EP+    + +
Sbjct: 39  SALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIM 98

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLED 236
           ++GYA  G ++DA  +F R        WN+++SGY  + +   AL +F  MR+ G  L +
Sbjct: 99  MNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPN 158

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           A T   V+ +C +LG+ E   Q+ G   K    DD  V +AL+D   + G    A K FS
Sbjct: 159 AFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFS 218

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            +K    I  N+M+  Y+    ++ A  IF++MP + ++SWN +I  LS++G   EALD+
Sbjct: 219 RIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDM 278

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
             +M+   +R D  +  S ++ACA +SSLE G+Q+  +V       D  +++++V+ Y K
Sbjct: 279 VVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAK 338

Query: 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
                                            CG  KE ++ F +++     D     +
Sbjct: 339 ---------------------------------CGCFKEAKRVFSSLR-----DRNSVSW 360

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           + ++  F + GC +E+V L  QM  E    D    ++++ GC    D  LG ++    ++
Sbjct: 361 TVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLK 420

Query: 534 LDPENACAYIQ-LSSIFATSGEWEKSSLIRDIMREKHV----GKLPGCSWADGIAFNCWF 588
                A      L S++A  G  + + LI + M E+ +    G +   S    IA    F
Sbjct: 421 SGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREF 480

Query: 589 LDTM 592
            D M
Sbjct: 481 FDDM 484


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  291 bits (745), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 180/607 (29%), Positives = 293/607 (48%), Gaps = 100/607 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++  C        G+++H + +K G  +S    AN L+ MY + G   DA  +FDE+
Sbjct: 114 LSSMINVCTGLEDSVQGRKIHGYLIKLG-YDSDAFSANALVDMYAKVGILEDASSVFDEI 172

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---ADLAALEYG 124
            + +  SWNA+I G +   +  ++L+L   M  K+    NM     A    A +A  E G
Sbjct: 173 AKPDIVSWNAIIAGCVLHEYHHRALELLREM-NKSGMCPNMFTLSSALKACAGMALRELG 231

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +Q+HS ++   +  DS LG  L+++Y K                               C
Sbjct: 232 RQLHSSLIKMDMGSDSFLGVGLIDMYSK-------------------------------C 260

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             M+DAR VF    +   + WN++ISG+  N ED EA  LF  M   G+  + +TL++VL
Sbjct: 261 NSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVL 320

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            + ++L      +Q+H  + K G                                 +D  
Sbjct: 321 KSIAALQANYMCRQIHALSLKSGF-------------------------------EFDNY 349

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
           ++N++I  Y  CG +EDA  +F   P   L+ + S++   +Q+G   EAL L+  M    
Sbjct: 350 VVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRG 409

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           ++ D F  +S+++ACA++S+ E G+QV   +   G  SD     SLV+ Y KCG      
Sbjct: 410 IKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDAS 469

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +AL LF +M   GV P  IT  ++L AC+H G
Sbjct: 470 CAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAG 529

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV E + +F++MK  + I+P  EHY+CM+DL  RAG L  A+ L+ +MPF+A+  +W ++
Sbjct: 530 LVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGAL 589

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L     H +  LG + AE ++ L+PE +  ++ L++I+A+ G W+K + +R +M++  V 
Sbjct: 590 LGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVK 649

Query: 572 KLPGCSW 578
           K PG SW
Sbjct: 650 KEPGMSW 656



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 141/578 (24%), Positives = 263/578 (45%), Gaps = 110/578 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     + +GKQ+H   +  G  +S   +AN L+ +Y +CG   DA  LFD +P R
Sbjct: 16  VLKACTVTKDLVLGKQVHGIVVVTG-FDSDEFVANSLVILYAKCGGFGDARSLFDAIPDR 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWNA+   ++      +++ LF+ M     + N+FS + +I+      L     G++
Sbjct: 75  SVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMIN--VCTGLEDSVQGRK 132

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH +++  G D D+   ++LV++Y K G    A+ V + + +PD                
Sbjct: 133 IHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPD---------------- 176

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                           V WN++I+G + +     AL L  +M ++G+  +  TL+S L A
Sbjct: 177 ---------------IVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKA 221

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ +   E G+Q+H    K+ +  D  +   L+D YSK                      
Sbjct: 222 CAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSK---------------------- 259

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    C  ++DA+ +F+ MP + +I+WN++I G SQN    EA  LF  M+   + 
Sbjct: 260 ---------CNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIG 310

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            ++ +L++V+ + A + +  +  Q+ A     G + D  +  SL+D Y KCG+       
Sbjct: 311 FNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRV 370

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL L+ EM++ G+KP     +++L+AC      
Sbjct: 371 FEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAY 430

Query: 454 KEG-QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           ++G Q     +K+ +  D  I   + +V+++A+ G + +A     ++P    V  WS+++
Sbjct: 431 EQGKQVHVHILKFGFMSD--IFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVS-WSAMI 487

Query: 513 RGCVAHGDKGLGRKVAERMIELD-PENACAYIQLSSIF 549
            G   HG      ++ ++M+++  P N   +I L S+ 
Sbjct: 488 GGLAQHGYGKEALQLFKQMLKVGVPPN---HITLVSVL 522



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 37/211 (17%)

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
              SVL AC+    L  GKQVHG     G   D  VA++L                    
Sbjct: 12  AFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSL-------------------- 51

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                      + +Y+ CG   DA+ +F  +P++S++SWN++      +    EA+ LF 
Sbjct: 52  -----------VILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFH 100

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           +M    +R ++FSL+S+I+ C  +     G ++   +  +G DSD   + +LVD Y K G
Sbjct: 101 DMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVG 160

Query: 419 Y--DALALFNEMRNTGVKPTIITFTAILSAC 447
              DA ++F+E+     KP I+++ AI++ C
Sbjct: 161 ILEDASSVFDEI----AKPDIVSWNAIIAGC 187



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 37/193 (19%)

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M+ L ++ ++F+  SV+ AC     L LG+QV   V + G DSD+ ++ SLV  Y KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A++LF++M  +G++P   + +++++ 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 447 CDHCGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           C       +G+K    + K  Y  D +    + +VD++A+ G L +A ++ +++  + D+
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGY--DSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDI 177

Query: 506 GMWSSILRGCVAH 518
             W++I+ GCV H
Sbjct: 178 VSWNAIIAGCVLH 190


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  291 bits (745), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 173/579 (29%), Positives = 291/579 (50%), Gaps = 84/579 (14%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           + T+   N ++  Y     P +A  LFD+MP RN  SWN ++ G++K G   ++ ++F+ 
Sbjct: 44  SKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDK 103

Query: 98  MPQKNDFSWNMLISGFAKA---DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
           MP++N  SW  ++ G+ +    D A L + +    +++     +  +LG  + +     G
Sbjct: 104 MPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV----SWTVMLGGLIED-----G 154

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
             + A ++ +M+   D    + +I G  + G++++AR +FD     + V W SMISGY  
Sbjct: 155 RVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAM 214

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           NN+   A  LF       V+ D +                                  + 
Sbjct: 215 NNKVDVARKLFE------VMPDKNE---------------------------------VT 235

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            +A+L  Y++ G  ++A +LF  + V      N MI  +   G +  A+ +F  M  K  
Sbjct: 236 WTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDD 295

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
            +W+++I    + G  +EAL LF  M +  +R +  S+ S++S C +++SL+ G QV ++
Sbjct: 296 GTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQ 355

Query: 395 VTIIGLDSDQIISTSLVDFYCKCG--------YD-------------------------A 421
           +     D D  +S+ L+  Y KCG        +D                         A
Sbjct: 356 LVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKA 415

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           L +F+EM ++G  P  ITF  +LSAC + G VKEG + F++MK +Y +D + EHY+CMVD
Sbjct: 416 LEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVD 475

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
           L  RAG LNEA+NLIE MP EAD  +W ++L  C  H +  L    A+++++L+P +A  
Sbjct: 476 LLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGP 535

Query: 542 YIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           YI LS+++A+   W+  + +R  MR ++V K PGCSW +
Sbjct: 536 YILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIE 574


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 164/524 (31%), Positives = 280/524 (53%), Gaps = 67/524 (12%)

Query: 89  EKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 148
           +++LQ+ + + + +   ++ LI    K+ L  L+ GK++H HI ++G      + + L+ 
Sbjct: 56  KEALQILHQIDKPSASVYSTLIQSCIKSRL--LQQGKKVHQHIKLSGFVPGLFILNRLLE 113

Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
           +Y KC     + ++ + M E D    + LISGYA  G + +A+ +FD+  +  +  W +M
Sbjct: 114 MYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAM 173

Query: 209 ISGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           ISGY+ ++   EAL LF  M+R +    +  T++S L+A +++  L  GK++HG+  + G
Sbjct: 174 ISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTG 233

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
           +  D +V SAL D Y K                               CG IE+A+HIF 
Sbjct: 234 LDSDEVVWSALSDMYGK-------------------------------CGSIEEARHIFD 262

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
            M ++ +++W +MI    Q+G   E  DLF ++ +  +R ++F+ + V++ACAN +S EL
Sbjct: 263 KMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEEL 322

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------------------- 419
           G++V   +T +G D     +++LV  Y KCG                             
Sbjct: 323 GKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQ 382

Query: 420 -----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                +A+  F  +  +G +P  ITF  +LSAC H GLV +G  +F ++K QY +    +
Sbjct: 383 NGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTAD 442

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           HY+C++DL AR+G  +EA N+I +M  + D  +W+S+L GC  HG+  L ++ AE + E+
Sbjct: 443 HYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEI 502

Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +PEN   Y+ L++I+AT+G W + + IR  M ++ V K PG SW
Sbjct: 503 EPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSW 546



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/531 (28%), Positives = 232/531 (43%), Gaps = 115/531 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+QSC     +  GK++H H    G +   L I NRLL+MY +C +  D+  LFDEMP R
Sbjct: 76  LIQSCIKSRLLQQGKKVHQHIKLSGFVPG-LFILNRLLEMYAKCDSLMDSQKLFDEMPER 134

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------------- 117
           +  SWN +I G+ K+G  +++  LF+ MP++++FSW  +ISG+ + D             
Sbjct: 135 DLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMK 194

Query: 118 ---------------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
                                +  L  GK+IH +I+  GLD D V+ S+L ++YGKCG  
Sbjct: 195 RSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSI 254

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
             A  + + M                                D   V W +MI  Y  + 
Sbjct: 255 EEARHIFDKM-------------------------------VDRDIVTWTAMIDRYFQDG 283

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
              E   LF  + R+G+  +  T + VL+AC++    E GK+VHG+  +VG       AS
Sbjct: 284 RRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAAS 343

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           AL+  YSK                               CG +  A+ +F+  P   L S
Sbjct: 344 ALVHMYSK-------------------------------CGNMVSAERVFKETPQPDLFS 372

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           W S+I G +QNG P EA+  F  + K   + D  +   V+SACA+   ++ G   F  + 
Sbjct: 373 WTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSI- 431

Query: 397 IIGLDSDQIISTSLVDFYCKCGYDALAL---FNEMRNT----GVKPTIITFTAILSACDH 449
                 +Q   T   D Y  C  D LA    F+E  N      +KP    + ++L  C  
Sbjct: 432 -----KEQYGLTHTADHYA-CIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRI 485

Query: 450 CGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM 499
            G +K  Q+  +A+   + I+PE    Y  + +++A AG  +E   + + M
Sbjct: 486 HGNLKLAQRAAEAL---FEIEPENPATYVTLANIYATAGMWSEVAKIRKTM 533


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 174/626 (27%), Positives = 304/626 (48%), Gaps = 111/626 (17%)

Query: 1   MDTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           + TRI+  Y   LLQ C   +     + +H H +K G  +  L +   L+ +Y +CG   
Sbjct: 58  LGTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTG-FHEDLFVMTFLVNVYSKCGVME 116

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-- 116
            A  +FD +PRRN  +W  ++ G+++  H   +LQLF  M +   +  N  +     A  
Sbjct: 117 SAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACS 176

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            L ++E+GKQ+H++++   +DFD+ +G+SL + Y K      A +   ++KE D      
Sbjct: 177 SLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKD------ 230

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
                                     + W S+IS    N +   +L  F  M  +G+  +
Sbjct: 231 -------------------------VISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPN 265

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             TL SVLSAC  +  L+ G Q+H  + K+G    +++                      
Sbjct: 266 EYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIK--------------------- 304

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG-----------LS 345
                     N+++ +Y  CG + +A+ +F  M   +L++WN+MI G           ++
Sbjct: 305 ----------NSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVA 354

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
            + S   AL +F  + +  ++ D F+ +SV+S C+N+ +LE GEQ+  ++   G+ +D +
Sbjct: 355 AHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVV 414

Query: 406 ISTSLVDFYCKCG---------------------------------YDALALFNEMRNTG 432
           + T+LV  Y KCG                                   AL LF +MR  G
Sbjct: 415 VGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVG 474

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           +KP  +TF  +LSAC H GL  E   +F+ M+ QY+I P ++H++C++D++ R G + EA
Sbjct: 475 IKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEA 534

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
            +++ +M FE +  +WS ++ GC +HG   LG   AE++++L P++   Y+ L ++  ++
Sbjct: 535 FDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISA 594

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSW 578
           G W+  S +R +M+E+ VGKL   SW
Sbjct: 595 GRWKDVSKVRKLMKEEKVGKLKDWSW 620



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 120/501 (23%), Positives = 226/501 (45%), Gaps = 93/501 (18%)

Query: 128 HSHILVNGLDFDSV-LGSSLVNLY-----GKCGDFNSANQ-------VLNMMKEPDDFCL 174
           HS I +N +D +   LG+ + + Y      +C D N A +       ++      D F +
Sbjct: 43  HSLIQLNVVDAEEPKLGTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVM 102

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + L++ Y+ CG M  A +VFD     +   W ++++GY+ N+    AL LF KM   G  
Sbjct: 103 TFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAY 162

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
               TL  VL+ACSSL  +E GKQVH +  K   ID                        
Sbjct: 163 PSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYH-ID------------------------ 197

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                 +DT + N++ + YS   R+E A   F+ +  K +ISW S+I     NG    +L
Sbjct: 198 ------FDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSL 251

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
             F +M    ++ ++++L SV+SAC  + +L+LG Q+ +    +G  S  +I  S++  Y
Sbjct: 252 SFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLY 311

Query: 415 CKCGY--------------------------------------------DALALFNEMRN 430
            KCG+                                             ALA+F ++  
Sbjct: 312 LKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYR 371

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           +G+KP + TF+++LS C +   +++G++       +  +  ++   + +V ++ + G ++
Sbjct: 372 SGMKPDLFTFSSVLSVCSNLVALEQGEQ-IHGQIIKSGVLADVVVGTALVSMYNKCGSID 430

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE--RMIELDPENACAYIQLSSI 548
           +A     +MP    +  W+S++ G   HG      ++ E  R++ + P N   ++ + S 
Sbjct: 431 KASKAFLEMPSRTMIS-WTSMITGFARHGLSQQALQLFEDMRLVGIKP-NQVTFVGVLSA 488

Query: 549 FATSGEWEKSSLIRDIMREKH 569
            + +G  +++    ++M++++
Sbjct: 489 CSHAGLADEALYYFELMQKQY 509


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 174/626 (27%), Positives = 304/626 (48%), Gaps = 111/626 (17%)

Query: 1   MDTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           + TRI+  Y   LLQ C   +     + +H H +K G  +  L +   L+ +Y +CG   
Sbjct: 52  LGTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTG-FHEDLFVMTFLVNVYSKCGVME 110

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-- 116
            A  +FD +PRRN  +W  ++ G+++  H   +LQLF  M +   +  N  +     A  
Sbjct: 111 SAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACS 170

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            L ++E+GKQ+H++++   +DFD+ +G+SL + Y K      A +   ++KE D      
Sbjct: 171 SLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKD------ 224

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
                                     + W S+IS    N +   +L  F  M  +G+  +
Sbjct: 225 -------------------------VISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPN 259

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             TL SVLSAC  +  L+ G Q+H  + K+G    +++                      
Sbjct: 260 EYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIK--------------------- 298

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG-----------LS 345
                     N+++ +Y  CG + +A+ +F  M   +L++WN+MI G           ++
Sbjct: 299 ----------NSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVA 348

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
            + S   AL +F  + +  ++ D F+ +SV+S C+N+ +LE GEQ+  ++   G+ +D +
Sbjct: 349 AHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVV 408

Query: 406 ISTSLVDFYCKCG---------------------------------YDALALFNEMRNTG 432
           + T+LV  Y KCG                                   AL LF +MR  G
Sbjct: 409 VGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVG 468

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           +KP  +TF  +LSAC H GL  E   +F+ M+ QY+I P ++H++C++D++ R G + EA
Sbjct: 469 IKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEA 528

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
            +++ +M FE +  +WS ++ GC +HG   LG   AE++++L P++   Y+ L ++  ++
Sbjct: 529 FDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISA 588

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSW 578
           G W+  S +R +M+E+ VGKL   SW
Sbjct: 589 GRWKDVSKVRKLMKEEKVGKLKDWSW 614



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 120/501 (23%), Positives = 226/501 (45%), Gaps = 93/501 (18%)

Query: 128 HSHILVNGLDFDSV-LGSSLVNLY-----GKCGDFNSANQ-------VLNMMKEPDDFCL 174
           HS I +N +D +   LG+ + + Y      +C D N A +       ++      D F +
Sbjct: 37  HSLIQLNVVDAEEPKLGTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVM 96

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + L++ Y+ CG M  A +VFD     +   W ++++GY+ N+    AL LF KM   G  
Sbjct: 97  TFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAY 156

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
               TL  VL+ACSSL  +E GKQVH +  K   ID                        
Sbjct: 157 PSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYH-ID------------------------ 191

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                 +DT + N++ + YS   R+E A   F+ +  K +ISW S+I     NG    +L
Sbjct: 192 ------FDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSL 245

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
             F +M    ++ ++++L SV+SAC  + +L+LG Q+ +    +G  S  +I  S++  Y
Sbjct: 246 SFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLY 305

Query: 415 CKCGY--------------------------------------------DALALFNEMRN 430
            KCG+                                             ALA+F ++  
Sbjct: 306 LKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYR 365

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           +G+KP + TF+++LS C +   +++G++       +  +  ++   + +V ++ + G ++
Sbjct: 366 SGMKPDLFTFSSVLSVCSNLVALEQGEQ-IHGQIIKSGVLADVVVGTALVSMYNKCGSID 424

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE--RMIELDPENACAYIQLSSI 548
           +A     +MP    +  W+S++ G   HG      ++ E  R++ + P N   ++ + S 
Sbjct: 425 KASKAFLEMPSRTMIS-WTSMITGFARHGLSQQALQLFEDMRLVGIKP-NQVTFVGVLSA 482

Query: 549 FATSGEWEKSSLIRDIMREKH 569
            + +G  +++    ++M++++
Sbjct: 483 CSHAGLADEALYYFELMQKQY 503


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 179/594 (30%), Positives = 293/594 (49%), Gaps = 75/594 (12%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           KQ H H ++ G  +     A++L  M       +   A  +FDE+P+ N F+WN +I  +
Sbjct: 47  KQTHGHMIRTGTFSDPYS-ASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAY 105

Query: 83  MKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
                   S+  F  M  +     N +++  LI   A A++++L  G+ +H      G+ 
Sbjct: 106 ASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIK--AAAEVSSLSLGQSLH------GMA 157

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
             S +GS                         D F  ++LI  Y +CG ++ A +VF   
Sbjct: 158 VKSAVGS-------------------------DVFVANSLIHCYFSCGDLDSACKVFTTI 192

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
            +   V WNSMI+G++      +AL LF KM    V     T+  VLSAC+ +  LE G+
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           QV  +  +  V  ++ +A+A+LD Y+K G   DA +LF  ++  D +   TM+  Y+   
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVI 376
             E A+ +  +MP K +++WN++I    QNG P EAL +F  +  + ++++++ +L S +
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
           SACA + +LELG  + + +   G+  +  ++++L+  Y KCG                  
Sbjct: 373 SACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVF 432

Query: 419 ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                           +A+ +F +M+   VKP  +TFT +  AC H GLV E +  F  M
Sbjct: 433 VWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQM 492

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
           +  Y I PE +HY+C+VD+  R+G L +AV  IE MP      +W ++L  C  H +  L
Sbjct: 493 ESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNL 552

Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
                 R++EL+P N  A++ LS+I+A  G+WE  S +R  MR   + K PGCS
Sbjct: 553 AEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCS 606


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 186/609 (30%), Positives = 301/609 (49%), Gaps = 105/609 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C   + +  G+++H   +K G L+  + I N L+ MY + G    A ++F EMP R
Sbjct: 132 VIKACGGLYDLAEGERVHGKVIKSG-LDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVR 190

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAA-LEYGK 125
           +  SWN+MI G++ +G   +SL  F  M       + FS   +I       L   L  GK
Sbjct: 191 DLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFS---VIGILGACSLEGFLRNGK 247

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +IH  ++ + L+ D ++ +SLV++Y K                               CG
Sbjct: 248 EIHCQMMRSRLELDVMVQTSLVDMYAK-------------------------------CG 276

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVL 244
           +M+ A R+FD+ TD S V WN+MI GY  N +  E+     KM+  G L  D  T+ ++L
Sbjct: 277 RMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLL 336

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
             C+ L  +  GK VHG A + G +  +++ +AL+D                        
Sbjct: 337 PPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVD------------------------ 372

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                  +Y  CG+++ A+ +F  M  ++LISWN+MI   ++NG   +A+ LF ++    
Sbjct: 373 -------MYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKT 425

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           L+ D  ++AS++ A A ++SL   EQ+   VT + LDS+  +S S+V  Y KCG      
Sbjct: 426 LKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAR 485

Query: 419 --YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCG 451
             +D                         ++ LF+EMR  G +P   TF ++L +C   G
Sbjct: 486 EIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAG 545

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV EG ++F++MK  Y+I+P IEHY C++DL  R G L+ A N IE+MP      +W S+
Sbjct: 546 LVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSL 605

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L      GD  L    AE ++ L+ +N   Y+ LS+++A +G WE    I+  M+++ + 
Sbjct: 606 LTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLE 665

Query: 572 KLPGCSWAD 580
           K  GCS  D
Sbjct: 666 KSVGCSVVD 674



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 216/512 (42%), Gaps = 104/512 (20%)

Query: 46  RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QK 101
           R L  Y+  G   +AL LF+ M + + F WN MI GF+  G    ++  ++ M     + 
Sbjct: 65  RALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRG 124

Query: 102 NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
           ++F++  +I   A   L  L  G+++H  ++ +GLD D  +G+SL+ +Y K G   SA  
Sbjct: 125 DNFTYPFVIK--ACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEM 182

Query: 162 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221
           V   M   D    +++ISGY + G                   W S              
Sbjct: 183 VFREMPVRDLVSWNSMISGYVSVGD-----------------GWRS-------------- 211

Query: 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281
           L  F +M+ +G+  D  ++  +L ACS  GFL +GK++H    +  +  DV+V ++L+D 
Sbjct: 212 LSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDM 271

Query: 282 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
           Y+K G    A +LF ++                                +KS+++WN+MI
Sbjct: 272 YAKCGRMDYAERLFDQI-------------------------------TDKSIVAWNAMI 300

Query: 342 VGLSQNGSPIEALDLFCNMNK-LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
            G S N    E+      M +   L  D  ++ +++  CA + ++ LG+ V       G 
Sbjct: 301 GGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGF 360

Query: 401 DSDQIISTSLVDFYCKCG---------------------------------YDALALFNE 427
               ++ T+LVD Y +CG                                   A+ LF +
Sbjct: 361 LPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQD 420

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           + N  +KP   T  +IL A      ++E ++       +  +D      + +V ++ + G
Sbjct: 421 LCNKTLKPDATTIASILPAYAELASLREAEQ-IHGYVTKLKLDSNTFVSNSIVFMYGKCG 479

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            L  A  + ++M F+ DV  W++++     HG
Sbjct: 480 NLLRAREIFDRMTFK-DVISWNTVIMAYAIHG 510



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 160/387 (41%), Gaps = 67/387 (17%)

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           E +   L+  +S Y   G M +A  +F+      + +WN MI G++ N    +A+  +H+
Sbjct: 57  ERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHR 116

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M   GV  D  T   V+ AC  L  L  G++VHG   K G+  D+ + ++L+  Y+K G 
Sbjct: 117 MEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGC 176

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
              A  +F E+ V D +  N+MI+ Y S G                   W S        
Sbjct: 177 IESAEMVFREMPVRDLVSWNSMISGYVSVGD-----------------GWRS-------- 211

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
                 L  F  M    +++D+FS+  ++ AC+    L  G+++  ++    L+ D ++ 
Sbjct: 212 ------LSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQ 265

Query: 408 TSLVDFYCKCG---------------------------------YDALALFNEMRNTG-V 433
           TSLVD Y KCG                                 +++ A   +M+  G +
Sbjct: 266 TSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKL 325

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
            P  IT   +L  C     +  G K       +    P +   + +VD++   G L  A 
Sbjct: 326 HPDWITMINLLPPCAQLEAILLG-KSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAE 384

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGD 520
            L  QM  E ++  W++++     +G+
Sbjct: 385 CLFGQMN-ERNLISWNAMIASYTKNGE 410


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/510 (31%), Positives = 263/510 (51%), Gaps = 68/510 (13%)

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           DS L + L++LY K G    A  + + M + D F  +AL+S YA  G + + +  FDR  
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
              SV +N+ I+G+  N+   E+L LF +M+R G      T+ S+L+A + L  L +GKQ
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQ 176

Query: 259 VHGHACKVGVIDDVIVASALLDTYSK-------------------------------RGM 287
           +HG       + +V + +AL D Y+K                                G 
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQ 236

Query: 288 PSDACKLFSELKVY----DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           P     L  ++++     D + ++T+I  Y  CGR+++A+ +F     K ++ W +M+VG
Sbjct: 237 PEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVG 296

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
            ++NG   +AL LF  M    +  D ++L+SV+S+CA ++SL  G+ V  +  + GL+++
Sbjct: 297 YAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNN 356

Query: 404 QIISTSLVDFYCKCGY---------------------------------DALALFNEMRN 430
            ++S++L+D Y KCG+                                 DAL LF  M  
Sbjct: 357 LLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ 416

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
              KP  +TF  ILSAC HC  +++GQ++FD++  Q+ + P ++HY+CMV+L  R G + 
Sbjct: 417 QKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIE 476

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           +AV LI+ M  + D  +WS++L  C   GD       A  + ELDP  A  YI LS+++A
Sbjct: 477 QAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYA 536

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           + G W+  + +R++M+ K+V K  G SW +
Sbjct: 537 SMGRWKDVASVRNLMKSKNVKKFAGFSWIE 566



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 19/215 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ SC    S+H G+ +H   +  G LN+ L +++ L+ MY +CG   DA  +F+ M
Sbjct: 325 LSSVVSSCAKLASLHHGQAVHGKSILAG-LNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGK 125
           P RN  SWNAMI G  + GH + +L+LF  M Q+     N+   G   A L    +E G+
Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443

Query: 126 Q-----IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALIS 179
           +      + H +   LD  +     +VNL G+ G    A  ++ NM  +PD    S L+S
Sbjct: 444 EYFDSITNQHGMTPTLDHYAC----MVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499

Query: 180 GYANCGKMND----ARRVF--DRTTDTSSVMWNSM 208
             +  G + +    AR +F  D T     +M ++M
Sbjct: 500 ICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNM 534


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 200/611 (32%), Positives = 308/611 (50%), Gaps = 81/611 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFDEMP 68
           LL+ C    +I+  KQ+H   +K G LN+T+ + ++L+        G+ + AL LF+E  
Sbjct: 34  LLEKCK---NINTFKQIHSLIIKTG-LNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQ 89

Query: 69  ---RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAAL 121
              + N F WN++I G+        SL LF+ M     Q N  ++  L     KA   A 
Sbjct: 90  QHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAK--AT 147

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             GKQ+H+H L   L F+  + +S++++Y   G+ + A  V +     D    +ALI+GY
Sbjct: 148 HEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGY 207

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
            + G ++DARR+FD       V WN+MISGY+ +    EA++ F++M+   VL + ST+ 
Sbjct: 208 VSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMV 267

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            VLSAC      E GK +       G   ++ + +AL+D Y K                 
Sbjct: 268 VVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCK----------------- 310

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                         CG  + A+ +F  +  K +ISWN+MI G S      EAL LF  M 
Sbjct: 311 --------------CGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVML 356

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCG-- 418
           + +++ +  +   ++ ACA + +L+LG+ V A +   +   S+  + TSL+D Y KCG  
Sbjct: 357 RSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCI 416

Query: 419 -------------------------------YDALALFNEMRNTGV-KPTIITFTAILSA 446
                                            ALALF+EM N G+ +P  ITF  +LSA
Sbjct: 417 EAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSA 476

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C   GLV  G ++F +M   Y I P+++HY CM+DL ARA    EA  L++ M  E D  
Sbjct: 477 CTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGA 536

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W S+L  C AHG    G  VAER+ +L+PENA A++ LS+I+A +G W+  + IR  + 
Sbjct: 537 IWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLN 596

Query: 567 EKHVGKLPGCS 577
           +K + K+PGC+
Sbjct: 597 DKGMKKVPGCT 607


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 194/611 (31%), Positives = 296/611 (48%), Gaps = 108/611 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           + +L +C     + +G QLH   +K     S L + N L+ MY + G   DA   F+ + 
Sbjct: 432 SSILSACACLKYLDLGHQLHSVIIKNK-FASNLFVGNALVDMYAKSGALEDARQQFELIR 490

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAALE 122
            R+  SWN +I G+++   + ++  LF       ++P  ++ S   ++S  A A +  LE
Sbjct: 491 NRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILP--DEVSLASILS--ACASVRGLE 546

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            GKQ+H   +  G +     GSSL+++Y KCG  +SA+++L  M E     ++ALI+GYA
Sbjct: 547 QGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYA 606

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
                                           N E  +A+ LF  M   G+     T AS
Sbjct: 607 QI------------------------------NLE--QAVNLFRDMLVEGINSTEITFAS 634

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           +L AC     L  G+Q+H    K+G+ +DD  +  +LL  Y      +DA  LFSE    
Sbjct: 635 LLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEF--- 691

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                                     + P KS + W +MI GLSQN   + AL L+  M 
Sbjct: 692 --------------------------SNP-KSAVVWTAMISGLSQNDCSVVALQLYKEMR 724

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
             ++  D+ +  S + ACA +SS++ G +  + +   G DSD++ S++LVD Y KCG   
Sbjct: 725 SCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVK 784

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           DAL +F+EM+ + V P  +TF  +L+AC
Sbjct: 785 SSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTAC 844

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H G V EG+  FD M   Y + P  +H +CMVDL  R G L EA   I ++ FE D  +
Sbjct: 845 SHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKV 904

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W+++L  C  HGD   G++ AE++IEL+P+N+  Y+ LS+I+A SG W++ + +R  MRE
Sbjct: 905 WATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMRE 964

Query: 568 KHVGKLPGCSW 578
           K V KLPGCSW
Sbjct: 965 KGVKKLPGCSW 975



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 146/540 (27%), Positives = 220/540 (40%), Gaps = 163/540 (30%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L SC     +  G+Q+H + +K G   S       L+ MY +C   TDA  +FD  
Sbjct: 163 FAIVLSSCARLEMVKCGRQVHCNVVKMG-FESISYCEGALIGMYAKCNFLTDARSIFDGA 221

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQ---------------------------------- 93
              +  SW +MI G++K+G  E++++                                  
Sbjct: 222 VELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNAS 281

Query: 94  -LFNVMPQKNDFSWNMLISGFAK---------------------------------ADLA 119
            LF+ MP +N  +WN++ISG AK                                 A LA
Sbjct: 282 DLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLA 341

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL++G  +H+  L  GL  +  +GSSLV++Y                             
Sbjct: 342 ALDFGLLVHAEALKQGLHSNVYVGSSLVSMY----------------------------- 372

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
             A CGKM  A++VFD   + + V+WN+M+ GY+ N    E + LF  M+  G   D  T
Sbjct: 373 --AKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFT 430

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            +S+LSAC+ L +L+ G Q+H    K     ++ V +AL+D Y+K G   DA + F  ++
Sbjct: 431 YSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIR 490

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             D +  N +I                               VG  Q    +EA  LF  
Sbjct: 491 NRDNVSWNVII-------------------------------VGYVQEEDEVEAFHLFRR 519

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           MN L +  D+ SLAS++SACA++  LE G+QV       G ++     +SL+D Y KCG 
Sbjct: 520 MNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGA 579

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                            A+ LF +M   G+  T ITF ++L AC
Sbjct: 580 IDSAHKILACMPERSVVSMNALIAGYAQINLEQAVNLFRDMLVEGINSTEITFASLLDAC 639



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 143/581 (24%), Positives = 245/581 (42%), Gaps = 135/581 (23%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           RL Q   T+  IH  + L L F  KG+L       N ++ +Y +C +   A   F ++  
Sbjct: 70  RLSQFSTTNKIIH-AQSLKLGFWSKGVL------GNVIVDLYAKCADVDYAERAFKQLED 122

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGK 125
           ++  +WN+++    K G     ++ F ++       N+F++ +++S  A+ ++  ++ G+
Sbjct: 123 KDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEM--VKCGR 180

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN--------------------- 164
           Q+H +++  G +  S    +L+ +Y KC     A  + +                     
Sbjct: 181 QVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVG 240

Query: 165 --------------MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
                         + +EPD      +I+ Y + G++++A  +F R  + + V WN MIS
Sbjct: 241 LPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMIS 300

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
           G+       EA+  F  MR+ G+    STL SVLSA +SL  L+ G  VH  A K G+  
Sbjct: 301 GHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHS 360

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
           +V V S+L+  Y+K G    A K+F  L   + +L                         
Sbjct: 361 NVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVL------------------------- 395

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
                 WN+M+ G  QNG   E ++LF NM       D F+ +S++SACA +  L+LG Q
Sbjct: 396 ------WNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQ 449

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCG-------------------------------- 418
           + + +      S+  +  +LVD Y K G                                
Sbjct: 450 LHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEED 509

Query: 419 -YDALALFNEMRNTGVKPTIITFTAILSACD-----------HCGLVKEGQKWFDAMKWQ 466
             +A  LF  M   G+ P  ++  +ILSAC            HC  VK GQ         
Sbjct: 510 EVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQ--------- 560

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              + ++   S ++D++A+ G ++ A  ++  MP  + V M
Sbjct: 561 ---ETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSM 598



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/525 (24%), Positives = 228/525 (43%), Gaps = 116/525 (22%)

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVN 134
           +  +++  ++   + K+  LF+ +PQ+        +S F+  +       K IH+  L  
Sbjct: 44  YTHILQNCLQKSKQVKTHSLFDEIPQR--------LSQFSTTN-------KIIHAQSLKL 88

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           G     VLG+ +V+LY KC D                               ++ A R F
Sbjct: 89  GFWSKGVLGNVIVDLYAKCAD-------------------------------VDYAERAF 117

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
            +  D   + WNS++S +         +  F  +  +GV  +  T A VLS+C+ L  ++
Sbjct: 118 KQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVK 177

Query: 255 HGKQVHGHACKVG--------------------------VID-----DVIVASALLDTYS 283
            G+QVH +  K+G                          + D     D +  ++++  Y 
Sbjct: 178 CGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYI 237

Query: 284 KRGMPSDACKLFSELKVY----DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
           K G+P +A K+F E++      D +   T+I  Y   GR+++A  +F  MPN+++++WN 
Sbjct: 238 KVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNL 297

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           MI G ++ G  +EA++ F NM K  ++  + +L SV+SA A++++L+ G  V A     G
Sbjct: 298 MISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQG 357

Query: 400 LDSDQIISTSLVDFYCKCG--------YDAL-------------------------ALFN 426
           L S+  + +SLV  Y KCG        +D L                          LF 
Sbjct: 358 LHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFF 417

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
            M++ G  P   T+++ILSAC     +  G +   ++  +      +   + +VD++A++
Sbjct: 418 NMKSCGFYPDDFTYSSILSACACLKYLDLGHQ-LHSVIIKNKFASNLFVGNALVDMYAKS 476

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           G L +A    E +    +V  W+ I+ G V   D+     +  RM
Sbjct: 477 GALEDARQQFELIRNRDNVS-WNVIIVGYVQEEDEVEAFHLFRRM 520



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 119/259 (45%), Gaps = 45/259 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL +C+    +++G+Q+H   LK G+      +   LL MYM     TDA +LF E 
Sbjct: 632 FASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEF 691

Query: 68  PR-RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGF-AKADLA 119
              ++   W AMI G  +      +LQL+      NV+P +  F     +S   A A ++
Sbjct: 692 SNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATF-----VSALRACAVVS 746

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN-MMKEPDDFCLSALI 178
           +++ G + HS I   G D D +  S+LV++Y KCGD  S+ QV   M ++ D    +++I
Sbjct: 747 SIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMI 806

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
            G+A  G   DA RVFD                               +M+++ V  D  
Sbjct: 807 VGFAKNGYAEDALRVFD-------------------------------EMKQSHVTPDDV 835

Query: 239 TLASVLSACSSLGFLEHGK 257
           T   VL+ACS  G +  G+
Sbjct: 836 TFLGVLTACSHSGRVSEGR 854


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 176/598 (29%), Positives = 297/598 (49%), Gaps = 101/598 (16%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            H+G+Q+H   +K G   +     + LL MY +C    DA L F  + + N  SWNAMI 
Sbjct: 115 FHLGQQVHSIIIKMGYAENVYA-GSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMIN 173

Query: 81  GFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
           G+ + G +E +  L + M Q+    +D ++  L+     AD   L    Q+H  I+ +GL
Sbjct: 174 GYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLT--SQLHGKIIKHGL 231

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
                                   +++N M        +ALI+ Y+ CG ++DA+R+FD 
Sbjct: 232 ------------------------ELVNTM-------CNALITSYSKCGSLDDAKRIFDS 260

Query: 197 TTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           +      V WNS+++ Y+  +++  A  L   M+ +G   D  +  S++SAC +     +
Sbjct: 261 SAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNN 320

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G+ +HG   K G    V +++AL+  Y K                             S 
Sbjct: 321 GRSLHGLVIKRGFEQSVPISNALISMYLK-----------------------------SD 351

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
            G +++A  IF ++  K  +SWNS++ GLSQ GS  +A+  F +M    + +D +S ++V
Sbjct: 352 YGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAV 411

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
           + +C+++++ +LG+Q+       GL+S++ +S+SL+  Y KCG                 
Sbjct: 412 LRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSS 471

Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                             AL LF  M    VK   ITF A+L+AC H GLV++G K+   
Sbjct: 472 ITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRC 531

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           M+  Y + P +EHY+C VDL+ R+G L EA  LIE+MPF+ D  +W + L  C + G+  
Sbjct: 532 MESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIE 591

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           L  +VA  ++E++PE  C Y+ LS+++     W++ + ++ +M+E+ V K+PG SW +
Sbjct: 592 LACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIE 649



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 46/334 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC--GNPTDALLLFDEMP 68
           ++ +C   +  + G+ LH   +K+G    ++PI+N L+ MY++   G+  +AL +F+ + 
Sbjct: 308 IISACFNENISNNGRSLHGLVIKRG-FEQSVPISNALISMYLKSDYGSMKEALCIFESLE 366

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYG 124
            ++  SWN+++ G  + G  E +++ F  M       + +S++ ++   + +DLA  + G
Sbjct: 367 FKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLR--SCSDLATFQLG 424

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +QIH   L  GL+ +  + SSL+ +Y KC                               
Sbjct: 425 QQIHVLALKYGLESNEFVSSSLIFMYSKC------------------------------- 453

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G + DARR F+  +  SS+ WN+++ GY  + +   AL LF  M    V  D  T  +VL
Sbjct: 454 GIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVL 513

Query: 245 SACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-D 302
           +ACS +G +E G K +       GV   +   +  +D Y + G   +A  L  E+    D
Sbjct: 514 TACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPD 573

Query: 303 TILLNTMITVYSSCGRIE----DAKHIFRTMPNK 332
           T +  T +    SCG IE     A H+    P +
Sbjct: 574 TTVWKTFLGACRSCGNIELACQVAGHLLEMEPEE 607



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 160/386 (41%), Gaps = 69/386 (17%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D +  + +++GY  C ++  A  +FD      SV WN+MI+G+I+      +  +   MR
Sbjct: 32  DVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMR 91

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
             G   D  T  S+L   +  G    G+QVH    K+G  ++V   SALLD Y+K     
Sbjct: 92  SCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAK----- 146

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
                                     C ++EDA   F ++   + +SWN+MI G +Q G 
Sbjct: 147 --------------------------CEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGD 180

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
              A  L   M +   ++D  + A ++    +     L  Q+  ++   GL+    +  +
Sbjct: 181 RETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNA 240

Query: 410 LVDFYCKCG--------YD--------------------------ALALFNEMRNTGVKP 435
           L+  Y KCG        +D                          A  L  +M+  G +P
Sbjct: 241 LITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEP 300

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA--GCLNEAV 493
            + ++T+I+SAC +  +   G+     +  +   +  +   + ++ ++ ++  G + EA+
Sbjct: 301 DLYSYTSIISACFNENISNNGRS-LHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEAL 359

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHG 519
            + E + F+  V  W+SIL G    G
Sbjct: 360 CIFESLEFKDRVS-WNSILTGLSQTG 384



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%)

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + D    N ++  Y  C  +  A  +F  MP +  +SWN+MI G    G+   + D+   
Sbjct: 30  IADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRC 89

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
           M      +D+++  S++   A      LG+QV + +  +G   +    ++L+D Y KC
Sbjct: 90  MRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKC 147


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 187/610 (30%), Positives = 313/610 (51%), Gaps = 92/610 (15%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           QLH H    G L+   P + +L++ Y + G    +  +FD  P+ + F W  +I+ ++  
Sbjct: 366 QLHAHLFITG-LHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWG 424

Query: 86  GHKEKSLQLFNVM-----PQKNDFSWNMLI---SGFAKADLAA----LEYGKQIHSHILV 133
           G  E+++ L++ M      Q ++F +  ++   SGF    +         G  + S ++ 
Sbjct: 425 GFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMIS 484

Query: 134 NGLDFDSV-----------LGSSLVNLYGKCGDFNSANQ-VLNMMKEPD-DFCLSALISG 180
             ++ DSV           LGS  +   G+  +  S +  V+    +P+ DF   AL+  
Sbjct: 485 EAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMEL 544

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA+ G + D  +VF+   + + + WN++IS +  N +  EALLLF +M+  G++ D+ +L
Sbjct: 545 YADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSL 604

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           AS LSAC ++ F + G Q+HG+  K G  +D  V +AL+D Y+K                
Sbjct: 605 ASSLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAK---------------- 647

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CG +  A  +F  +  KSL++WNSMI G SQNG  +EA+ LF  M
Sbjct: 648 ---------------CGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQM 692

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
               ++MDK +  SVI AC+++  LE G+ V  ++ + GL  D  + T+L D Y KCG  
Sbjct: 693 YMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGEL 752

Query: 419 ------YD-------------------------ALALFNEMRNTGVKPTIITFTAILSAC 447
                 +D                          ++LFN+M  +G+KP  ITF  ILSAC
Sbjct: 753 QMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSAC 812

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H G V+EG+ +F++M  ++ ++P+ +H++CMVDL +RAG LN A  +I  +PF A+  +
Sbjct: 813 SHAGAVEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSI 871

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L GC  H    + + + + ++++D  +   Y  LS+I+A  G W+K   +R +M+ 
Sbjct: 872 WGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKS 931

Query: 568 KHVGKLPGCS 577
           K + K+PG S
Sbjct: 932 KGLRKVPGYS 941



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 176/404 (43%), Gaps = 73/404 (18%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +  G+ +H   +++ +      +   L+++Y   GN  D   +F+ +  +   SWN +I 
Sbjct: 515 VKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLIS 574

Query: 81  GFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVN 134
            F + G  E++L LF       +MP     + ++   G     ++  + G QIH +I+  
Sbjct: 575 IFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACG----TISFSQLGAQIHGYII-- 628

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
                            K G+FN             DF  +ALI  YA CG ++ A ++F
Sbjct: 629 -----------------KTGNFN-------------DFVQNALIDMYAKCGFVHSANKMF 658

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           ++  + S V WNSMI G+  N    EA+ LF +M  N V  D  T  SV+ ACS LG+LE
Sbjct: 659 EKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLE 718

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            GK VH      G+  D  + +AL D YSK                              
Sbjct: 719 KGKWVHHKLIMYGLRKDSYLDTALTDMYSK------------------------------ 748

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            CG ++ A  +F  M  +S++SW+ MI G   +G     + LF  M    ++ +  +   
Sbjct: 749 -CGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMH 807

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           ++SAC++  ++E G+  F  ++  G++        +VD   + G
Sbjct: 808 ILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAG 851



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 134/288 (46%), Gaps = 39/288 (13%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C T     +G Q+H + +K G  N    + N L+ MY +CG    A  +F+++  ++  +
Sbjct: 611 CGTISFSQLGAQIHGYIIKTGNFNDF--VQNALIDMYAKCGFVHSANKMFEKIKEKSLVT 668

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           WN+MI GF + G+  +++ LF+ M     + +  ++  +I   A + L  LE GK +H  
Sbjct: 669 WNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQ--ACSHLGYLEKGKWVHHK 726

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           +++ GL  DS L ++L ++Y KCG+   A+ V + M E      S +I+GY   G++N  
Sbjct: 727 LIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQIN-- 784

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                          + LF++M  +G+  +  T   +LSACS  
Sbjct: 785 -----------------------------ATISLFNQMLGSGIKPNDITFMHILSACSHA 815

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           G +E GK       + GV       + ++D  S+ G  + A ++ + L
Sbjct: 816 GAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSL 863


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 177/610 (29%), Positives = 294/610 (48%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C+    +  GKQLH + LK G ++    +   LL +Y++ G+  +AL +FD  
Sbjct: 247 IASLLAACSAVGDLRKGKQLHSYLLKAG-MSLDYIMEGSLLDLYVKSGDIEEALQIFDSG 305

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
            R N   WN M+  + ++    KS  +F  M     + N F++  ++          L  
Sbjct: 306 DRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGL-- 363

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIHS  + NG   D  +   L+++Y K G                             
Sbjct: 364 GEQIHSLTIKNGFQSDMYVSGVLIDMYSKYG----------------------------- 394

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
              ++ A+R+ D   +   V W SMI+GY+ +    EAL  F +M+  G+  D   LAS 
Sbjct: 395 --WLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASA 452

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +SAC+ +  +  G Q+H              A   +  YS                  D 
Sbjct: 453 ISACAGIKAVHQGSQIH--------------ARVYVSGYSA-----------------DV 481

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
            + N ++ +Y+ CG  ++A   F  + +K  I+WN +I G +Q+G   EAL +F  M++ 
Sbjct: 482 SIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQA 541

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
             + + F+  S ISA AN++ ++ G+Q+ ARV   G  S+  IS +L+  Y KCG     
Sbjct: 542 GAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDA 601

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF++M+  G+KP+ +TF  +L+AC H 
Sbjct: 602 KMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHV 661

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG  +F +M  ++ I P  +HY+C+VD+  RAG L+ A   +E+MP  AD  +W +
Sbjct: 662 GLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRT 721

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +G   A+ ++EL+P ++ +Y+ LS+ +A +G+W     IR IM+++ V
Sbjct: 722 LLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGV 781

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 782 RKEPGRSWIE 791



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 139/552 (25%), Positives = 238/552 (43%), Gaps = 103/552 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C       +G+ +H+   K+G  + T  + N L+ +Y+RC +   A  +F +M
Sbjct: 146 LSSILSACTKTELFQLGRLIHVQVYKQGFFSETF-VGNALISLYLRCRSFRLADRVFCDM 204

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
              +  ++N +I G  + GH +++L +F+ M        ++ I+    A   +  L  GK
Sbjct: 205 LYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGK 264

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+HS++L  G+  D ++  SL++LY K GD   A Q                        
Sbjct: 265 QLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQ------------------------ 300

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                  +FD    T+ V+WN M+  Y   ++  ++  +F++M   GV  +  T   +L 
Sbjct: 301 -------IFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLR 353

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            C+  G +  G+Q+H    K G   D+ V+  L+D YSK G                   
Sbjct: 354 TCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGW------------------ 395

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                        ++ A+ I   +  K ++SW SMI G  Q+    EAL+ F  M    +
Sbjct: 396 -------------LDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGI 442

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             D   LAS ISACA I ++  G Q+ ARV + G  +D  I   LV  Y +CG       
Sbjct: 443 WPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFS 502

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +AL +F +M   G K  + TF + +SA  +   
Sbjct: 503 SFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLAD 562

Query: 453 VKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           +K+G++     +K  Y  + EI   + ++ L+ + G + +A     +M    +V  W++I
Sbjct: 563 IKQGKQIHARVIKTGYTSETEIS--NALISLYGKCGSIEDAKMDFFEMTKRNEVS-WNTI 619

Query: 512 LRGCVAHGDKGL 523
           +  C  HG +GL
Sbjct: 620 ITCCSQHG-RGL 630



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 123/514 (23%), Positives = 217/514 (42%), Gaps = 103/514 (20%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK- 101
           I N L+ +Y + G    A  +F+E+  R+  SW A++ G+ + G  E++++L+  M +  
Sbjct: 79  IGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSG 138

Query: 102 ---NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
                +  + ++S   K +L   + G+ IH  +   G   ++ +G++L++LY        
Sbjct: 139 VVPTPYVLSSILSACTKTEL--FQLGRLIHVQVYKQGFFSETFVGNALISLY-------- 188

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
                                    C     A RVF       SV +N++ISG+      
Sbjct: 189 -----------------------LRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHG 225

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
             AL +F +M+ +G+  D+ T+AS+L+ACS++G L  GKQ+H +  K G+  D I+  +L
Sbjct: 226 DRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSL 285

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           LD Y K G   +A ++F      + +L N M+  Y   G+I+D    F            
Sbjct: 286 LDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAY---GQIDDLAKSF------------ 330

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
                           D+F  M    +R +KF+   ++  C +   + LGEQ+ +     
Sbjct: 331 ----------------DIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKN 374

Query: 399 GLDSDQIISTSLVDFYCKCGY---------------------------------DALALF 425
           G  SD  +S  L+D Y K G+                                 +AL  F
Sbjct: 375 GFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETF 434

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            EM+  G+ P  I   + +SAC     V +G +   A  +      ++  ++ +V L+AR
Sbjct: 435 KEMQACGIWPDNIGLASAISACAGIKAVHQGSQ-IHARVYVSGYSADVSIWNGLVYLYAR 493

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            G   EA +  E +  +  +  W+ ++ G    G
Sbjct: 494 CGISKEAFSSFEAIEHKEGI-TWNGLISGFAQSG 526



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/458 (20%), Positives = 183/458 (39%), Gaps = 112/458 (24%)

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF-LEHG 256
           T   +  +N  ++G+++ ++  + L LF    R  ++  A   A  L AC   G      
Sbjct: 2   TPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLV 61

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
            ++H  A   G+    I+ + L+D Y+K+G                              
Sbjct: 62  PEIHAKAIICGLSGYRIIGNLLIDLYAKKGF----------------------------- 92

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
             +  A+ +F  +  +  +SW +++ G +QNG   EA+ L+  M++  +    + L+S++
Sbjct: 93  --VRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSIL 150

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------------- 417
           SAC      +LG  +  +V   G  S+  +  +L+  Y +C                   
Sbjct: 151 SACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSV 210

Query: 418 --------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA- 462
                         G  AL +F+EM+ +G+ P  +T  ++L+AC   G +++G++     
Sbjct: 211 TFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYL 270

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS------------- 509
           +K    +D  +E    ++DL+ ++G + EA+ + +      +V +W+             
Sbjct: 271 LKAGMSLDYIME--GSLLDLYVKSGDIEEALQIFDSGD-RTNVVLWNLMLVAYGQIDDLA 327

Query: 510 ----------------------SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ--L 545
                                  +LR C   G+ GLG ++    I+ +   +  Y+   L
Sbjct: 328 KSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIK-NGFQSDMYVSGVL 386

Query: 546 SSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIA 583
             +++  G  +K+  I D++ EK V      SW   IA
Sbjct: 387 IDMYSKYGWLDKAQRILDMIEEKDV-----VSWTSMIA 419


>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
          Length = 826

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 191/643 (29%), Positives = 311/643 (48%), Gaps = 111/643 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L+  + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 179 KACGALQWSRFGRGVHGYVVKSG-LHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 237

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++L + M ++      + +S    A A++  +E GKQ H+ 
Sbjct: 238 VAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQSHAI 297

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNGL+ D++LG+S +N Y K G    A  + + M E D    + LISGY   G + D 
Sbjct: 298 AIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVED- 356

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                         A+ +   MR   +  D  TL++++SA +  
Sbjct: 357 ------------------------------AIHMCQLMRLENLKYDCVTLSTLMSAAART 386

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK+V  +  +     D+++AS  +D Y+  G   DA K+F  +   D IL NT++
Sbjct: 387 QNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLL 446

Query: 311 TVYSSC-----------------------------------GRIEDAKHIFRTM------ 329
           +VY+                                     G++ +AK IF  M      
Sbjct: 447 SVYAESGLSGEAFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIF 506

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  L+SW +M+ GL QNG   EA+     M +  LR + FS+   +SAC+N++SL  G 
Sbjct: 507 PN--LVSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGR 564

Query: 390 QVFARVTIIGLDSDQI-ISTSLVDFYCKCG------------------------------ 418
            V   +      S  + I TSLVD Y KCG                              
Sbjct: 565 SVHGYIIRNQQHSSSVLIETSLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALN 624

Query: 419 ---YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
               +A+AL   + +TG+KP  ITFT++LSAC+H G V +  + F  M  ++ I P +EH
Sbjct: 625 GNVKEAIALCRRLEDTGIKPDNITFTSLLSACNHAGDVSQAVEIFTDMVSKHGIKPCLEH 684

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y  MVD+ A AG  ++A+ LIE+MP+++D  M  S++  C       L   ++  ++E +
Sbjct: 685 YGLMVDILASAGETDKALRLIEEMPYKSDARMIQSLVASCNMKHKTELMDFLSRHLLETE 744

Query: 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           PEN+  Y+ +S+ +A  G W++    R++M+ K + K PGCSW
Sbjct: 745 PENSGNYVTISNAYAVEGSWDEVVKTREMMKAKRLKKSPGCSW 787



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 232/520 (44%), Gaps = 77/520 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G        I  +L+  Y +C     + +LF ++
Sbjct: 72  GEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKL 131

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             RN +SW A+I    ++G  E++L  F  M Q   F  N ++    KA   L    +G+
Sbjct: 132 RVRNVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGR 191

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H +++ +GL     + SSL ++YGKCG  + A +V + + E +    +AL        
Sbjct: 192 GVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNAL-------- 243

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                                  + GY+ N  + EA+ L   MR+ G+     T+++ LS
Sbjct: 244 -----------------------MVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLS 280

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A +++  +E GKQ H  A   G+  D I+ ++ L+ Y K G+   A  +F  +   D + 
Sbjct: 281 ASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVT 340

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD- 364
            N +I+ Y   G +EDA H+                                C + +L+ 
Sbjct: 341 WNLLISGYVQQGLVEDAIHM--------------------------------CQLMRLEN 368

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDAL 422
           L+ D  +L++++SA A   +L+LG++V          SD +++++ VD Y  CG   DA 
Sbjct: 369 LKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAK 428

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            +F+ +    +   +I +  +LS     GL  E  + F  M+ +  + P    ++ ++  
Sbjct: 429 KVFDSV----LAKDLILWNTLLSVYAESGLSGEAFRLFYEMQLE-SVPPNAITWNLIILS 483

Query: 483 FARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHG 519
           F R G +NEA  +  QM       ++  W++++ G V +G
Sbjct: 484 FLRNGQVNEAKEIFSQMQSSGIFPNLVSWTTMMNGLVQNG 523



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 203/490 (41%), Gaps = 99/490 (20%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQIH+ IL NG                   DF + N+ +           + L+  YA 
Sbjct: 87  GKQIHARILKNG-------------------DFYAKNEYIE----------TKLVIFYAK 117

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C     +  +F +    +   W ++I          EAL+ F +M +N +  D   + +V
Sbjct: 118 CDAFEASEVLFSKLRVRNVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNV 177

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
             AC +L +   G+ VHG+  K G+ D V VAS+L D Y K G+  DA K+F E+     
Sbjct: 178 CKACGALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEI----- 232

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                                     P +++++WN+++VG  QNG   EA+ L  +M K 
Sbjct: 233 --------------------------PERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKE 266

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            +   + ++++ +SA AN+  +E G+Q  A   + GL+ D I+ TS ++FYCK G     
Sbjct: 267 GIEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYA 326

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        DA+ +   MR   +K   +T + ++SA    
Sbjct: 327 EMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAART 386

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
             +K G K       ++    +I   S  VD++A  G + +A  + + +    D+ +W++
Sbjct: 387 QNLKLG-KEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSV-LAKDLILWNT 444

Query: 511 ILRGCVAHGDKGLG-RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           +L      G  G   R   E  +E  P NA  +  +   F  +G+  ++  I   M+   
Sbjct: 445 LLSVYAESGLSGEAFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSS- 503

Query: 570 VGKLPG-CSW 578
            G  P   SW
Sbjct: 504 -GIFPNLVSW 512



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 135/352 (38%), Gaps = 64/352 (18%)

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           SS  +   +S    + E  EAL L  +M    +         +L  C     L  GKQ+H
Sbjct: 32  SSASYFHRVSSLSKSGEIREALSLLTEMDFRKLRIGPEIYGEILQGCVYERDLCTGKQIH 91

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
               K G            D Y+K                 +  +   ++  Y+ C   E
Sbjct: 92  ARILKNG------------DFYAK-----------------NEYIETKLVIFYAKCDAFE 122

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            ++ +F  +  +++ SW ++I    + G   EAL  F  M + ++  D F + +V  AC 
Sbjct: 123 ASEVLFSKLRVRNVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACG 182

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------- 419
            +     G  V   V   GL     +++SL D Y KCG                      
Sbjct: 183 ALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNA 242

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +A+ L ++MR  G++PT +T +  LSA  +   ++EG K   A+    
Sbjct: 243 LMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEG-KQSHAIAIVN 301

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            ++ +    +  ++ + + G +  A  + ++M  E DV  W+ ++ G V  G
Sbjct: 302 GLELDNILGTSNLNFYCKVGLIEYAEMIFDRM-IEKDVVTWNLLISGYVQQG 352



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 45/237 (18%)

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           +KH      + S  S+   +  LS++G   EAL L   M+   LR+       ++  C  
Sbjct: 21  SKHHDAQAHSPSSASYFHRVSSLSKSGEIREALSLLTEMDFRKLRIGPEIYGEILQGCVY 80

Query: 382 ISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKC-GYDAL-ALFNEMRNTGVKPTI 437
              L  G+Q+ AR+   G     ++ I T LV FY KC  ++A   LF+++R   V    
Sbjct: 81  ERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNV---- 136

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----------------------IEH 475
            ++ AI+      GL +E    F  M  Q  I P+                      +  
Sbjct: 137 YSWAAIIGVKCRIGLCEEALMGFVEM-LQNEIFPDNFVVPNVCKACGALQWSRFGRGVHG 195

Query: 476 Y-------------SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           Y             S + D++ + G L++A  + +++P E +V  W++++ G V +G
Sbjct: 196 YVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIP-ERNVVAWNALMVGYVQNG 251



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 45/83 (54%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   S+H G+ +H + ++    +S++ I   L+ MY +CG+   A ++F      +
Sbjct: 551 LSACSNLASLHFGRSVHGYIIRNQQHSSSVLIETSLVDMYAKCGDINKAEMVFRSKLCSD 610

Query: 72  CFSWNAMIEGFMKLGHKEKSLQL 94
              +NAMI  +   G+ ++++ L
Sbjct: 611 LPLYNAMISAYALNGNVKEAIAL 633


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 196/668 (29%), Positives = 322/668 (48%), Gaps = 121/668 (18%)

Query: 28  HLH----FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           HLH     +K G  N     +N L++ +++ G+   A  LFDEMP +N FS N MI G++
Sbjct: 85  HLHVDASIIKTG-FNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYI 143

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLG 143
           K G+  ++  LF+ M Q+   +W MLI G+A+ +     +G  I   +  +G+D D V  
Sbjct: 144 KSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIE--MGRHGIDPDHV-- 199

Query: 144 SSLVNLYGKCGDFNSANQVL----NMMKEPDDFCL---SALISGYANCGKMNDARRVFDR 196
            SL  L     +F+S N+V     +++K   D  L   ++L+  Y     +  A ++F+ 
Sbjct: 200 -SLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFND 258

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             +  SV +N++++GY     + EA+ LF KM+  G      T A++L+A   L  +E G
Sbjct: 259 IPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFG 318

Query: 257 KQVHGHACKVGVIDDVIVASALLD-------------------------------TYSKR 285
           +QVHG   K   + +V VA+ALLD                                Y+  
Sbjct: 319 QQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWN 378

Query: 286 GMPSDACKLFSELK---------------------------------------VYDTILL 306
           G   ++ +LF EL+                                       + + ++ 
Sbjct: 379 GRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVG 438

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N+++ +Y+ CG   +A  IF  +  +S + W +MI    Q G   + L LF  M +  + 
Sbjct: 439 NSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIG 498

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALAL 424
            D  + AS++ ACA+++SL LG+Q+ + +   G  S+    ++LVD Y KCG   DAL +
Sbjct: 499 ADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQM 558

Query: 425 FNEM--RNT-----------------------------GVKPTIITFTAILSACDHCGLV 453
           F EM  RN+                             G++P  ++  +IL AC HCGLV
Sbjct: 559 FQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLV 618

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG ++FD+M   Y + P+ EHY+  +D+  R G  +EA  L+ QMPFE D  MWSS+L 
Sbjct: 619 EEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLN 678

Query: 514 GCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            C  H ++ L +K A ++  +    +A  Y+ +S+I+A +GEW+    ++  MRE+ V K
Sbjct: 679 SCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKK 738

Query: 573 LPGCSWAD 580
           +P  SW +
Sbjct: 739 VPAYSWVE 746



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 216/477 (45%), Gaps = 82/477 (17%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  G+Q+H   +K   + +   +AN LL  Y +     +A  LF EMP  +  S+N ++ 
Sbjct: 315 IEFGQQVHGFVVKCNFVWNVF-VANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVT 373

Query: 81  GFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
            +   G  ++SL+LF  +      + +F +  L+S  A   L  L+ G+QIHS  +V   
Sbjct: 374 CYAWNGRVKESLELFKELQFTGFDRRNFPFATLLS-IAAISLN-LDIGRQIHSQTIVTDA 431

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
             + ++G+SLV++Y K                               CG+  +A R+F  
Sbjct: 432 ISEILVGNSLVDMYAK-------------------------------CGEFGEANRIFSD 460

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
               SSV W +MIS Y+      + L LF +M+R  +  DA+T AS++ AC+SL  L  G
Sbjct: 461 LAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLG 520

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           KQ+H H    G I +V   SAL+D Y+K G   DA ++F E+ V +++            
Sbjct: 521 KQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSV------------ 568

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
                              SWN++I   +QNG     L LF  M +  L+ D  SL S++
Sbjct: 569 -------------------SWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSIL 609

Query: 377 SACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGV 433
            AC++   +E G Q F  +T I  L   +    S +D  C+ G   +A  L  +M     
Sbjct: 610 CACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQM---PF 666

Query: 434 KPTIITFTAILSAC---DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           +P  I ++++L++C    +  L K+       MK      P    Y  M +++A AG
Sbjct: 667 EPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAP----YVTMSNIYAAAG 719


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 181/590 (30%), Positives = 295/590 (50%), Gaps = 70/590 (11%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ+H   L+  +  ST  +   ++       +   AL +F+ +P+      N  +    +
Sbjct: 40  KQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSR 99

Query: 85  LGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
               EK+L ++  M  +    + FS+  L+   ++  + +L  G +IH   L   L FDS
Sbjct: 100 SEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSR--VKSLVEGLEIHG--LAAKLGFDS 155

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
                                        D F  + L+  YA CG++ +AR +FD+    
Sbjct: 156 -----------------------------DPFVQTGLVRMYAACGRIAEARLMFDKMFHR 186

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             V W+ MI GY  +    +ALLLF +M+   V  D   L++VLSAC   G L +GK +H
Sbjct: 187 DVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIH 246

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
               +  ++ D  + SAL+  Y+  G    A  LF ++   + +    M+T YS  G+IE
Sbjct: 247 DFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIE 306

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
           +A+ +F  M  K L+ W++MI G +++ SP EAL+LF  M  L ++ D+ ++ SVI+ACA
Sbjct: 307 NARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACA 366

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD------------ 420
           ++ +L+  + +   V   G      I+ +L++ Y KCG        +D            
Sbjct: 367 HLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTC 426

Query: 421 -------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                        AL  F++M +  ++P  ITF  +L AC H GLV+EG+K F +M  ++
Sbjct: 427 MISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEH 486

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
           +I P+  HY CMVDLF RA  L EA+ L+E MP   +V +W S++  C  HG+  LG   
Sbjct: 487 NITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFA 546

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           A+R++ELDP++  A++ LS+I+A +  WE    +R +M+ K + K  GCS
Sbjct: 547 AKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCS 596



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 133/328 (40%), Gaps = 67/328 (20%)

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           ++ SA SS   L H KQVH                                 L S+L   
Sbjct: 25  TLFSALSSATSLTHLKQVHAQI------------------------------LRSKLDRS 54

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
            ++L+  +I+  +    ++ A  +F  +P       N  +  LS++  P + L ++  M 
Sbjct: 55  TSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMR 114

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
              L +D+FS   ++ A + + SL  G ++      +G DSD  + T LV  Y  CG   
Sbjct: 115 TQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIA 174

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                          DAL LF EM+N  V+P  +  + +LSAC 
Sbjct: 175 EARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACG 234

Query: 449 HCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
             G +  G+   D  M+    +DP ++  S +V ++A  G ++ A+NL E+M  +  V  
Sbjct: 235 RAGNLSYGKMIHDFIMENNIVVDPHLQ--SALVTMYASCGSMDLALNLFEKMTPKNLVAS 292

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELD 535
            ++++ G    G     R V  +M++ D
Sbjct: 293 -TAMVTGYSKLGQIENARSVFNQMVKKD 319


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 193/608 (31%), Positives = 296/608 (48%), Gaps = 98/608 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L  C +      G QLH   +  G     L +AN L+ MY + G  +DAL LF+ M
Sbjct: 76  FASVLSICASEALSEFGNQLHGLVISCGFHFDPL-VANALVAMYSKFGQLSDALKLFNTM 134

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
           P  N  +WN MI GF++ G  +++  LF+ M        ++  + F  +  + A+L+ GK
Sbjct: 135 PDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGK 194

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +IH +IL +G+  D  L S+L+++Y KC D   A ++       D    +A+ISGY   G
Sbjct: 195 EIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNG 254

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
             NDA  +F          W                 LL  KM  N V     TLASVL 
Sbjct: 255 LNNDALEIF---------RW-----------------LLEEKMSPNAV-----TLASVLP 283

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ L  L  GK++H +  K G+ +   V SA++D Y+K G    A ++F  +   D + 
Sbjct: 284 ACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVC 343

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N +IT  S  G+ ++                               A+DLF  M +  L
Sbjct: 344 WNAIITNCSQNGKPQE-------------------------------AIDLFRQMGREGL 372

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             D  S+++ +SACAN+ +L  G+ + + +     DS+    ++L+D Y KCG       
Sbjct: 373 SYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARC 432

Query: 419 -YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
            +D                         +LALF++M   G++P  +TF  ILSAC H G 
Sbjct: 433 VFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQ 492

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V +G ++F  M  +Y I   +EHY+C+VDLF RAG LNEA   I+ MPF  D G+W ++L
Sbjct: 493 VDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLL 552

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  HG+  L    +  +++LDPEN+  Y+ LS++ A +G+W     IR +M+++ V K
Sbjct: 553 GACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQK 612

Query: 573 LPGCSWAD 580
           +PG SW +
Sbjct: 613 VPGYSWIE 620



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 139/566 (24%), Positives = 254/566 (44%), Gaps = 106/566 (18%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF----NVM 98
           + + L+++Y   G   DA  LFD+MP ++C  WN M+ GF+K G    ++++F    N  
Sbjct: 9   VGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQ 68

Query: 99  PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
            + N  ++  ++S  A   L+  E+G Q+H  ++  G  FD ++ ++LV +Y K G  + 
Sbjct: 69  TKPNSITFASVLSICASEALS--EFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSD 126

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           A ++ N M + +    + +I+G+   G M+                              
Sbjct: 127 ALKLFNTMPDTNVVTWNGMIAGFVQNGFMD------------------------------ 156

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            EA LLF +M   GV  D+ T AS L + +    L+ GK++HG+  + G+  DV + SAL
Sbjct: 157 -EASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSAL 215

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +D Y K      ACK+F +    D ++   +I+ Y   G   DA  IFR +         
Sbjct: 216 IDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWL--------- 266

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
                L +  SP                 +  +LASV+ ACA +++L LG+++ A +   
Sbjct: 267 -----LEEKMSP-----------------NAVTLASVLPACAGLATLNLGKELHANILKH 304

Query: 399 GLDSDQIISTSLVDFYCKCG---------------------------------YDALALF 425
           GLD  + + ++++D Y KCG                                  +A+ LF
Sbjct: 305 GLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLF 364

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            +M   G+    ++ +A LSAC +   +  G K   +   +   D E+   S ++D++ +
Sbjct: 365 RQMGREGLSYDCVSISAALSACANLPALHHG-KAIHSFMIKGAFDSEVFAESALIDMYGK 423

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYI 543
            G L+ A  + + M  + +V  W+SI+    +HG   +   +  +M+E  + P++   ++
Sbjct: 424 CGNLSVARCVFDMMREKNEVS-WNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHV-TFL 481

Query: 544 QLSSIFATSGEWEKSSLIRDIMREKH 569
            + S    +G+ +K       M E++
Sbjct: 482 TILSACGHAGQVDKGIQYFRCMTEEY 507



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 175/383 (45%), Gaps = 66/383 (17%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D+F  S+LI  YA  G + DARR+FD+  +   V+WN M++G++   E   A+ +F  MR
Sbjct: 6   DEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
                 ++ T ASVLS C+S    E G Q+HG     G   D +VA+AL+  YSK G  S
Sbjct: 66  NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLS 125

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA KLF           NTM                    P+ ++++WN MI G  QNG 
Sbjct: 126 DALKLF-----------NTM--------------------PDTNVVTWNGMIAGFVQNGF 154

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
             EA  LF  M    +  D  + AS + +    +SL+ G+++   +   G+  D  + ++
Sbjct: 155 MDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSA 214

Query: 410 LVDFYCKC--------------------------GY-------DALALFNEMRNTGVKPT 436
           L+D Y KC                          GY       DAL +F  +    + P 
Sbjct: 215 LIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPN 274

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            +T  ++L AC     +  G++   A   ++ +D      S ++D++A+ G L+ A  + 
Sbjct: 275 AVTLASVLPACAGLATLNLGKE-LHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIF 333

Query: 497 EQMPFEADVGMWSSILRGCVAHG 519
            +MP E D   W++I+  C  +G
Sbjct: 334 RRMP-EKDAVCWNAIITNCSQNG 355


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 177/561 (31%), Positives = 284/561 (50%), Gaps = 52/561 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N+ +  +MR G   DA  LF  M RR+  ++NAM+ G+   G    +L  F  +P+ + F
Sbjct: 39  NKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRSIPRPDSF 98

Query: 105 SWNMLISGF----AKADLAAL----------EYGKQIHSHI---LVN--------GLDFD 139
           S+N L+       + AD  AL           Y   I SH    LV+          + D
Sbjct: 99  SYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKD 158

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
           +V  + ++  Y + G    A  + +   E D    +AL++GY  C ++ +A+++F+R   
Sbjct: 159 AVSWNGMLAAYIRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQ 218

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
              V WN+M+SG+    +  EA  LF        + D  T  +V+S  +  G LE  K+V
Sbjct: 219 RDVVSWNTMVSGHARRGDMAEARRLFDV----APIRDVFTWTAVVSGYAQNGMLEEAKRV 274

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
                +     + +  +A++  Y +R M  +A +LF  +   +    NTM+T Y+  G +
Sbjct: 275 FDAMPE----KNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGML 330

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           ++A+ IF  MP K  +SW +M+   SQ G   E L LF  M +           ++   C
Sbjct: 331 DEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGR----------CAMYFKC 380

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTI 437
            N   +E     F  +     + D +   +++  Y + G+  +AL +F+ MR T  KP  
Sbjct: 381 GN---MEEAHSAFEEME----ERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDD 433

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           IT   +L+AC H GLV++G  +F +M   + +  + EHY+CM+DL  RAG L+EAVNL++
Sbjct: 434 ITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMK 493

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
            MPFE D  MW ++L     H +  LGR  AE++ EL+PENA  Y+ LS+I+A+SG+W  
Sbjct: 494 DMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRD 553

Query: 558 SSLIRDIMREKHVGKLPGCSW 578
              +R +M E+ V K+PG SW
Sbjct: 554 VDKMRLMMHERGVKKVPGFSW 574



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 138/306 (45%), Gaps = 24/306 (7%)

Query: 263 ACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
           AC  G  D +VI  +  +  + + G   DA +LF+ +    T   N M+  Y++ GR+  
Sbjct: 25  ACITGKPDAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTL 84

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A   FR++P     S+N+++  L  + S  +A  LF  M       D  S   +IS+ AN
Sbjct: 85  ALSFFRSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPV----KDSVSYNVMISSHAN 140

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIIT 439
              + L    F     +  + D +    ++  Y + G   +A  LF    ++  +   I+
Sbjct: 141 HGLVSLARHYFD----LAPEKDAVSWNGMLAAYIRNGRIQEARDLF----DSRTEWDAIS 192

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           + A+++    C  ++E QK F+ M  +     ++  ++ MV   AR G + EA  L +  
Sbjct: 193 WNALMAGYVQCSQIEEAQKMFNRMPQR-----DVVSWNTMVSGHARRGDMAEARRLFDVA 247

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           P   DV  W++++ G   +G     ++V + M E   +NA ++  + + +      E++ 
Sbjct: 248 PIR-DVFTWTAVVSGYAQNGMLEEAKRVFDAMPE---KNAVSWNAMMAAYVQRRMMEEAK 303

Query: 560 LIRDIM 565
            + D M
Sbjct: 304 ELFDAM 309


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/516 (32%), Positives = 264/516 (51%), Gaps = 47/516 (9%)

Query: 98  MPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
           MP ++  ++N++IS  A   L +L        H      + D+V  + ++  Y + G   
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLA------RHYFDLAPEKDAVSWNGMLAAYVRNGRVE 54

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
            A  + N   E D    +AL+SGY   GKM++AR +FDR      V WN M+SGY    +
Sbjct: 55  EARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGD 114

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
             EA  LF        + D  T  +V+S  +  G LE  ++V     +     + +  +A
Sbjct: 115 MVEARRLFDA----APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE----RNAVSWNA 166

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           ++  Y +R M  +A +LF+ +   +    NTM+T Y+  G +E+AK +F TMP K  +SW
Sbjct: 167 MVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSW 226

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
            +M+   SQ G   E L LF  M +    +++ + A V+S CA+I++LE G Q+  R+  
Sbjct: 227 AAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIR 286

Query: 398 IGLDSDQIISTSLVDFYCKCG---------------------------------YDALAL 424
            G      +  +L+  Y KCG                                  +AL +
Sbjct: 287 AGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEI 346

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F+ MR T  KP  IT   +L+AC H GLV++G  +F +M   + +  + EHY+CM+DL  
Sbjct: 347 FDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLG 406

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544
           RAG L EA +L++ MPFE D  MW ++L     H +  LGR  AE++ EL+PENA  Y+ 
Sbjct: 407 RAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVL 466

Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           LS+I+A+SG+W  +  +R +M E+ V K+PG SW +
Sbjct: 467 LSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIE 502



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 189/403 (46%), Gaps = 39/403 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N L+  Y++ G  ++A  LFD MP R+  SWN M+ G+ + G   ++ +LF+  P ++ F
Sbjct: 72  NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 131

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           +W  ++SG+A+  +  LE  +++   +     + ++V  +++V  Y +    + A ++ N
Sbjct: 132 TWTAVVSGYAQNGM--LEEARRVFDAM----PERNAVSWNAMVAAYIQRRMMDEAKELFN 185

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
           MM   +    + +++GYA  G + +A+ VFD      +V W +M++ Y       E L L
Sbjct: 186 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQL 245

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
           F +M R G   + S  A VLS C+ +  LE G Q+HG   + G      V +ALL  Y K
Sbjct: 246 FIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFK 305

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
            G   DA   F E++  D +  NTMI                                G 
Sbjct: 306 CGNMEDARNAFEEMEERDVVSWNTMIA-------------------------------GY 334

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSD 403
           +++G   EAL++F  M     + D  +L  V++AC++   +E G   F  +    G+ + 
Sbjct: 335 ARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAK 394

Query: 404 QIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSA 446
               T ++D   + G  A A  + M++   +P    + A+L A
Sbjct: 395 PEHYTCMIDLLGRAGRLAEA-HDLMKDMPFEPDSTMWGALLGA 436



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G QLH   ++ G       + N LL MY +CGN  DA   F+EM  R
Sbjct: 264 VLSTCADIAALECGMQLHGRLIRAGYGVGCF-VGNALLAMYFKCGNMEDARNAFEEMEER 322

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--ALEYG 124
           +  SWN MI G+ + G  +++L++F++M     + +D +   +++  + + L    + Y 
Sbjct: 323 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 382

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
             +H      G+       + +++L G+ G    A+ ++  M  EPD     AL+
Sbjct: 383 YSMHHDF---GVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 434


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 185/657 (28%), Positives = 302/657 (45%), Gaps = 138/657 (21%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           ++H + + +G L   L  + +L+ +Y   G    A L+FD +P  +  SW  +I  +   
Sbjct: 23  EMHAYLVVQG-LTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLN 81

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLG 143
                 +  +N M        N++ S   KA  +    + G+++H  I+  G        
Sbjct: 82  SEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-------- 133

Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
                                    PD F  + L+  YA CG++  +R VFD   D +  
Sbjct: 134 ------------------------NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVF 169

Query: 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
            W+SMI+GY+ NN   + L+LF++MR   +  +  TL  ++ AC  LG L  GK +HG+ 
Sbjct: 170 SWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYL 229

Query: 264 CKVGVIDDVIVASALLDTYSK-------------------------------RGMPSDAC 292
            K G+     + +ALLD Y+K                                G P +A 
Sbjct: 230 IKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEAL 289

Query: 293 KLFSE--------------------------------------LKVYDTILLNTMITVYS 314
           KLF +                                      L   D I+ N+++  Y+
Sbjct: 290 KLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYA 349

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            C    DA+++F T+ ++ +++WNS+I   SQNGS  EAL+LF  M    +  D  +L S
Sbjct: 350 KCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVS 409

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG--------YD----- 420
           V+SACA++++L++G    A     GL S  + + T+L+ FY KCG        +D     
Sbjct: 410 VLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQK 469

Query: 421 --------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                               +L++F +M    +KP    FT+ILSAC H G++ EG + F
Sbjct: 470 STVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLF 529

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
             +   Y++ P  +HY+CMVDL ARAG L EA++ I++MP + DV ++ + L GC  H  
Sbjct: 530 TMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSR 589

Query: 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
             LG    +RM+EL P +AC Y+ + +++A+   W K   +R++M+++ + K PGCS
Sbjct: 590 FDLGELAIKRMLELHPGDACYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTPGCS 646



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 54/91 (59%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C + +++ VG   H + +K+G+L+S + +   LL  Y +CG+   A ++FD M
Sbjct: 407 LVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGM 466

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
            +++  +W+AMI G+   G+   SL +F  M
Sbjct: 467 DQKSTVTWSAMISGYGIQGNGRGSLSIFGDM 497


>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
          Length = 811

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 189/643 (29%), Positives = 308/643 (47%), Gaps = 111/643 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L   + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 161 KACGALQWSRFGRGVHGYVIKAG-LEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 219

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++LF+ M ++      + +S    A A++  +E GKQ H+ 
Sbjct: 220 VAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMVGVEEGKQSHAI 279

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNGL+ D++LG+SL+N Y K G    A  V + M + D    + LISGY   G + D 
Sbjct: 280 AIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLISGYVQQGLVED- 338

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                         A+ +   MR   +  D  TL++++SA +  
Sbjct: 339 ------------------------------AIYMSQLMRLEKLKYDCVTLSTLMSAAART 368

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK+V  +  +  +  D+++AS  +D Y+K G   DA K+F      D IL NT++
Sbjct: 369 ENLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLL 428

Query: 311 TVYSSC-----------------------------------GRIEDAKHIFRTM------ 329
             Y+                                     G + +AK +F  M      
Sbjct: 429 AAYAQSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGIS 488

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  LISW +M+ G+ QNG   EA+     M +  LR + FS+   +SA AN++SL  G 
Sbjct: 489 PN--LISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLHFGR 546

Query: 390 QVFARVTIIGLDSDQI-ISTSLVDFYCKCG------------------------------ 418
            +   +      S  + I TSLVD Y KCG                              
Sbjct: 547 SIHGYIIRNLRHSSSVSIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALY 606

Query: 419 ---YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
               +A+AL+  + + G+KP  +TFT++LSAC+H G + +    F AM  ++ + P +EH
Sbjct: 607 GNVKEAIALYRSLEDMGIKPDSVTFTSLLSACNHAGDIDQAVGVFTAMVLKHGMTPCLEH 666

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y  MVDL A AG   +A+ LIE+MP++ D  M  S++  C       L   ++  ++E +
Sbjct: 667 YGLMVDLLASAGETEKAIRLIEEMPYKPDARMIQSLVASCNKQHKTELVEYLSRHLLESE 726

Query: 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           PEN+  Y+ +S+ +A  G W++   +R++M+ K + K PGCSW
Sbjct: 727 PENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSW 769



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/516 (26%), Positives = 242/516 (46%), Gaps = 75/516 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LQ C     +  GKQ+H   LK G        I  +L+  Y +C     A ++F ++  R
Sbjct: 57  LQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVR 116

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           N FSW A+I    ++G  E +L  F  M +   F  N ++    KA   L    +G+ +H
Sbjct: 117 NVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVH 176

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            +++  GL+    + SSL ++YGK                               CG ++
Sbjct: 177 GYVIKAGLEDCVFVASSLADMYGK-------------------------------CGVLD 205

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           DAR+VFD   + + V WN+++ GY+ N  + EA+ LF  MR+ GV     T+++ LSA +
Sbjct: 206 DARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASA 265

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           ++  +E GKQ H  A   G+  D I+ ++LL+ Y K G+                     
Sbjct: 266 NMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGL--------------------- 304

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                     IE A+ +F  M +K +++WN +I G  Q G   +A+ +   M    L+ D
Sbjct: 305 ----------IEYAEMVFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYD 354

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFN 426
             +L++++SA A   +L+ G++V        LD+D +++++ +D Y KCG   DA  +F 
Sbjct: 355 CVTLSTLMSAAARTENLKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVF- 413

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
              ++ V+  +I +  +L+A    GL  E  + F  M+ +  + P +  ++ ++    R 
Sbjct: 414 ---DSTVEKDLILWNTLLAAYAQSGLSGEALRLFYEMQLE-SVPPNVITWNLIILSLLRN 469

Query: 487 GCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHG 519
           G +NEA  +  QM       ++  W++++ G V +G
Sbjct: 470 GEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNG 505


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/510 (31%), Positives = 263/510 (51%), Gaps = 68/510 (13%)

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           DS L + L++LY K G    A  + + M + D F  +AL+S YA  G + + +  FDR  
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
              SV +N+ I+G+  N+   E+L LF +M+R G      T+ S+L+A + L  L +GKQ
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQ 176

Query: 259 VHGHACKVGVIDDVIVASALLDTYSK-------------------------------RGM 287
           +HG       + +V + +AL D Y+K                                G 
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQ 236

Query: 288 PSDACKLFSELKVY----DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           P     L  ++++     D + ++T+I  Y  CGR+++A+ +F     K ++ W +M+VG
Sbjct: 237 PEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVG 296

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
            ++NG   +AL LF  M    +  D ++L+SV+S+CA ++SL  G+ V  +  + GL+++
Sbjct: 297 YAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNN 356

Query: 404 QIISTSLVDFYCKCGY---------------------------------DALALFNEMRN 430
            ++S++L+D Y KCG+                                 DAL LF  M  
Sbjct: 357 LLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ 416

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
              KP  +TF  ILSAC HC  +++GQ++FD++  Q+ + P ++HY+CMV+L  R G + 
Sbjct: 417 QKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIE 476

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           +AV LI+ M  + D  +WS++L  C   GD       A  + ELDP  A  YI LS+++A
Sbjct: 477 QAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYA 536

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           + G W+  + +R++M+ K+V K  G SW +
Sbjct: 537 SMGRWKDVASVRNLMKSKNVKKFAGFSWIE 566



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 19/215 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ SC    S+H G+ +H   +  G LN+ L +++ L+ MY +CG   DA  +F+ M
Sbjct: 325 LSSVVSSCAKLASLHHGQAVHGKSILAG-LNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGK 125
           P RN  SWNAMI G  + GH + +L+LF  M Q+     N+   G   A L    +E G+
Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443

Query: 126 QI-----HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALIS 179
           +      + H +   LD  +     +VNL G+ G    A  ++ NM  +PD    S L+S
Sbjct: 444 EYFDSISNQHGMTPTLDHYAC----MVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499

Query: 180 GYANCGKMND----ARRVF--DRTTDTSSVMWNSM 208
             +  G + +    AR +F  D T     +M ++M
Sbjct: 500 ICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNM 534


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 176/598 (29%), Positives = 297/598 (49%), Gaps = 101/598 (16%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            H+G+Q+H   +K G   +     + LL MY +C    DA L F  + + N  SWNAMI 
Sbjct: 115 FHLGQQVHSIIIKMGYAENVYA-GSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMIN 173

Query: 81  GFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
           G+ + G +E +  L + M Q+    +D ++  L+     AD   L    Q+H  I+ +GL
Sbjct: 174 GYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLT--SQLHGKIIKHGL 231

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
                                   +++N M        +ALI+ Y+ CG ++DA+R+FD 
Sbjct: 232 ------------------------ELVNTM-------CNALITSYSKCGSLDDAKRIFDS 260

Query: 197 TTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           +      V WNS+++ Y+  +++  A  L   M+ +G   D  +  S++SAC +     +
Sbjct: 261 SAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNN 320

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G+ +HG   K G    V +++AL+  Y K                             S 
Sbjct: 321 GRSLHGLVIKRGFEQSVPISNALISMYLK-----------------------------SD 351

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
            G +++A  IF ++  K  +SWNS++ GLSQ GS  +A+  F +M    + +D +S ++V
Sbjct: 352 YGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAV 411

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
           + +C+++++ +LG+Q+       GL+S++ +S+SL+  Y KCG                 
Sbjct: 412 LRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSS 471

Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                             AL LF  M    VK   ITF A+L+AC H GLV++G K+   
Sbjct: 472 ITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRC 531

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           M+  Y + P +EHY+C VDL+ R+G L EA  LIE+MPF+ D  +W + L  C + G+  
Sbjct: 532 MESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIE 591

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           L  +VA  ++E++PE  C Y+ LS+++     W++ + ++ +M+E+ V K+PG SW +
Sbjct: 592 LACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIE 649



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 46/334 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC--GNPTDALLLFDEMP 68
           ++ +C   +  + G+ LH   +K+G    ++PI+N L+ MY++   G+  +AL +F+ + 
Sbjct: 308 IISACFNENISNNGRSLHGLVIKRG-FEQSVPISNALISMYLKSDYGSMKEALCIFESLE 366

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYG 124
            ++  SWN+++ G  + G  E +++ F  M       + +S++ ++   + +DLA  + G
Sbjct: 367 FKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLR--SCSDLATFQLG 424

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +QIH   L  GL+ +  + SSL+ +Y KC                               
Sbjct: 425 QQIHVLALKYGLESNEFVSSSLIFMYSKC------------------------------- 453

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G + DARR F+  +  SS+ WN+++ GY  + +   AL LF  M    V  D  T  +VL
Sbjct: 454 GIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVL 513

Query: 245 SACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-D 302
           +ACS +G +E G K +       GV   +   +  +D Y + G   +A  L  E+    D
Sbjct: 514 TACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPD 573

Query: 303 TILLNTMITVYSSCGRIE----DAKHIFRTMPNK 332
           T +  T +    SCG IE     A H+    P +
Sbjct: 574 TTVWKTFLGACRSCGNIELACQVAGHLLEMEPEE 607



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 160/386 (41%), Gaps = 69/386 (17%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D +  + +++GY  C ++  A  +FD      SV WN+MI+G+I+      +  +   MR
Sbjct: 32  DVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMR 91

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
             G   D  T  S+L   +  G    G+QVH    K+G  ++V   SALLD Y+K     
Sbjct: 92  SCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAK----- 146

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
                                     C ++EDA   F ++   + +SWN+MI G +Q G 
Sbjct: 147 --------------------------CEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGD 180

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
              A  L   M +   ++D  + A ++    +     L  Q+  ++   GL+    +  +
Sbjct: 181 RETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNA 240

Query: 410 LVDFYCKCG--------YD--------------------------ALALFNEMRNTGVKP 435
           L+  Y KCG        +D                          A  L  +M+  G +P
Sbjct: 241 LITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEP 300

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA--GCLNEAV 493
            + ++T+I+SAC +  +   G+     +  +   +  +   + ++ ++ ++  G + EA+
Sbjct: 301 DLYSYTSIISACFNENISNNGRS-LHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEAL 359

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHG 519
            + E + F+  V  W+SIL G    G
Sbjct: 360 CIFESLEFKDRVS-WNSILTGLSQTG 384



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%)

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + D    N ++  Y  C  +  A  +F  MP +  +SWN+MI G    G+   + D+   
Sbjct: 30  IADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRC 89

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
           M      +D+++  S++   A      LG+QV + +  +G   +    ++L+D Y KC
Sbjct: 90  MRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKC 147


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 175/569 (30%), Positives = 287/569 (50%), Gaps = 57/569 (10%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y + G   DA+ L  EMP  + FSWN+ + G  + G   +++Q F+ M +K+  
Sbjct: 147 NAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMV 206

Query: 105 SWNMLISGFAKA---DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
           SWN+++ GF +A   D AA  +G+ I S  +V+ +        +L+N Y + G  + A  
Sbjct: 207 SWNLMLEGFVRAGDLDAAASFFGR-IESPNVVSWV--------TLLNGYCRAGRISDARD 257

Query: 162 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221
           + + M E +    + ++ GY    ++ +A ++FD     +S+ W ++ISG     +  EA
Sbjct: 258 LFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGKNSISWTTIISGLARAGKLQEA 317

Query: 222 LLLFHKMRRNGVLEDASTLASVL--SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
             L  KM  N V    + +   L  +  +    +  G +VH          D +  + ++
Sbjct: 318 KDLLDKMSFNCVAAKTALMHGYLQRNMVNDARQIFDGMEVH----------DTVCWNTMI 367

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
             Y +RGM  +A  LF  +   DT+  NTMI  Y+  G++  A  IFR M  K+ +SWNS
Sbjct: 368 SGYVQRGMLEEAMLLFQRMPNKDTVSWNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNS 427

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           +I G  QNG  ++A   F  M +   R D  + AS + ACAN+++L +G Q+ + +   G
Sbjct: 428 VISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYASCLRACANLAALHVGRQLHSLLVRSG 487

Query: 400 LDSDQIISTSLVDFYCKCGY---------------------------------DALALFN 426
             +D     +L+  Y KCG                                  +A+++F 
Sbjct: 488 HINDLFARNALISTYAKCGRMLEAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFR 547

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           EM   GV+P  +TF  ILSAC   GL+ EG  +F++M  +Y + P  EHY+CM DL  RA
Sbjct: 548 EMEANGVRPDEVTFVGILSACSRAGLIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRA 607

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G LNEA  L++ M  + + G+W ++L  C  + +  L R  AE++ EL+P  A  Y+ LS
Sbjct: 608 GKLNEAFELVQGMQIQPNAGVWGALLGACQMYKNHELARLAAEKLSELEPCRASNYVLLS 667

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPG 575
           +I A +G+W+++   R  ++EK   K PG
Sbjct: 668 NISAEAGKWDEAEKARASIKEKGANKPPG 696



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 140/557 (25%), Positives = 242/557 (43%), Gaps = 56/557 (10%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N+ L    R G    A  LFD MPRRN  ++N+M+    + G  +++  LF+ MP +N 
Sbjct: 21  SNQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNA 80

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGL-DFDSVLGSSLVNLYGKCGDFNSANQV 162
            SWN +I+  +       ++G+   +  L + +   D    + +V+ Y + G+   A  V
Sbjct: 81  VSWNAMIAALS-------DHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDV 133

Query: 163 LNMMKEPDDFCLS---ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
           L+ M  P D C +   A+ISGYA  G+ +DA ++           WNS ++G   + +  
Sbjct: 134 LDRM--PGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMV 191

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
            A+  F +M    V +D  +   +L      G L+      G      V+  V     LL
Sbjct: 192 RAVQFFDEM----VEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWVT----LL 243

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
           + Y + G  SDA  LF  +   + +  N M+  Y    R+E+A  +F  MP K+ ISW +
Sbjct: 244 NGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGKNSISWTT 303

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS-LELGEQVFARVTII 398
           +I GL++ G   EA DL          +DK S   V +  A +   L+      AR    
Sbjct: 304 IISGLARAGKLQEAKDL----------LDKMSFNCVAAKTALMHGYLQRNMVNDARQIFD 353

Query: 399 GLD-SDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
           G++  D +   +++  Y + G   +A+ LF  M N       +++  +++     G +++
Sbjct: 354 GMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNK----DTVSWNTMIAGYAQGGQMRK 409

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN---LIEQMPFEADVGMWSSIL 512
               F  M  +  +      ++ ++  F + G   +A +   L+ +    AD   ++S L
Sbjct: 410 AIGIFRRMSRKNTVS-----WNSVISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYASCL 464

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENAC-AYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           R C       +GR++   ++     N   A   L S +A  G   ++  I D M  K + 
Sbjct: 465 RACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLEAKQIFDEMVGKDI- 523

Query: 572 KLPGCSW---ADGIAFN 585
                SW    DG A N
Sbjct: 524 ----VSWNALVDGYASN 536



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A  L++C    ++HVG+QLH   ++ G +N  L   N L+  Y +CG   +A  +FDEM 
Sbjct: 461 ASCLRACANLAALHVGRQLHSLLVRSGHIND-LFARNALISTYAKCGRMLEAKQIFDEMV 519

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
            ++  SWNA+++G+   G   +++ +F  M
Sbjct: 520 GKDIVSWNALVDGYASNGQGTEAISVFREM 549


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 217/747 (29%), Positives = 337/747 (45%), Gaps = 189/747 (25%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           SI  G+ +H   L+K  L     +AN L+ +Y RCG   DA+ +FD M  R+  SWN+ I
Sbjct: 213 SITEGEVIH-GLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTI 271

Query: 80  EGFMKLGHKEKSLQLFNVM-PQKNDFSWNMLISGF-AKADLAALEYGKQIHSHILVNGL- 136
            G+   G  ++++ LF+ M  +  + S   ++S   A A+L     GK +H + + +GL 
Sbjct: 272 SGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLL 331

Query: 137 -DFDSV-------LGSSLV----------------------------NL----YGKCGDF 156
            D +SV       LGS LV                            NL    Y K  +F
Sbjct: 332 WDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEF 391

Query: 157 NSANQVLNMMKE----PDDFCLS-----------------------------------AL 177
             +  +   M E    PD+  LS                                   AL
Sbjct: 392 EESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNAL 451

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           IS YA    +++A  VFDR     ++ WNS+ISG  SN  ++EA+ LF +M   G   D+
Sbjct: 452 ISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDS 511

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDD-------------------------- 271
           +TL SVL AC+   +   G+ VHG++ K G+I +                          
Sbjct: 512 TTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRN 571

Query: 272 -----VIVASALLDTYSKRGMPSDACKLFSELKVYDTI---------------------- 304
                V+  +A++ +Y++ G+      L  E+ V D I                      
Sbjct: 572 MAQKNVVSWTAMITSYTRAGLFDKVAGLLQEM-VLDGIKPDVFAVTSVLHGFAGDESLKQ 630

Query: 305 ------------------LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
                             + N ++ +Y +C  +E+A+ +F  + NK +ISWN++I G S+
Sbjct: 631 GKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSR 690

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           N    E+  LF +M  L  + +  ++  ++ A A+ISSLE G ++ A     G   D   
Sbjct: 691 NNFANESFSLFSDM-LLQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYT 749

Query: 407 STSLVDFYCKCGY---------------------------------DALALFNEMRNTGV 433
           S +LVD Y KCG                                  DA+ALF +MR +GV
Sbjct: 750 SNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGV 809

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           +P   +F+AIL AC H GL  EG K+F+AM+ +Y I+P+++HY+C+VDL +  G L EA 
Sbjct: 810 EPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAF 869

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             IE MP E D  +W S+L GC  H D  L  KVA+R+ +L+PEN   Y+ L++I+A + 
Sbjct: 870 EFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAE 929

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSWAD 580
            WE    +++ +  + + +  GCSW +
Sbjct: 930 RWEAVKKLKNKIGGRGLRENTGCSWIE 956



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 202/467 (43%), Gaps = 68/467 (14%)

Query: 11  LLQSCNTHHSIHVGKQLH--LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           ++Q C    S+   ++ H  +     GI+ S L    RL+  Y++CG+   A ++FDEMP
Sbjct: 100 VVQLCGEERSLEAARRAHALVRAGTGGIIGSVL--GKRLVLAYLKCGDLGGARMVFDEMP 157

Query: 69  RR--NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYG 124
            R  +   W +++  + K G  ++ + LF  M           +S   K  A L ++  G
Sbjct: 158 PRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEG 217

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           + IH  +   GL     + ++L+ LY +CG    A QV + M   D              
Sbjct: 218 EVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARD-------------- 263

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                            ++ WNS ISGY SN     A+ LF KM   G    + T+ SVL
Sbjct: 264 -----------------AISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVL 306

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+ LGF   GK VHG++ K G++ D                      L S     D  
Sbjct: 307 PACAELGFELVGKVVHGYSMKSGLLWD----------------------LESVQSGIDEA 344

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNGSPIEALDLFCNMNKL 363
           L + ++ +Y  CG +  A+ +F  MP+K  +  WN ++ G ++     E+L LF  M++L
Sbjct: 345 LGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHEL 404

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DA 421
            +  D+ +L+ ++     +S    G      +  +G  +   +  +L+ FY K     +A
Sbjct: 405 GITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNA 464

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
           + +F+ M +       I++ +++S C   GL  E  + F  M  Q H
Sbjct: 465 VLVFDRMPHQ----DTISWNSVISGCTSNGLNSEAIELFVRMWMQGH 507



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 110/261 (42%), Gaps = 49/261 (18%)

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLF 357
           +  ++L   ++  Y  CG +  A+ +F  MP +   +  W S++   ++ G   E + LF
Sbjct: 127 IIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLF 186

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M    +  D  +++ V+   A++ S+  GE +   +  +GL     ++ +L+  Y +C
Sbjct: 187 RQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRC 246

Query: 418 G--------YD-------------------------ALALFNEMRNTGVKPTIITFTAIL 444
           G        +D                         A+ LF++M + G + + +T  ++L
Sbjct: 247 GCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVL 306

Query: 445 SACDHCGL-----------VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
            AC   G            +K G  W D    Q  ID  +   S +V ++ + G +  A 
Sbjct: 307 PACAELGFELVGKVVHGYSMKSGLLW-DLESVQSGIDEALG--SKLVFMYVKCGDMGSAR 363

Query: 494 NLIEQMPFEADVGMWSSILRG 514
            + + MP + +V +W+ I+ G
Sbjct: 364 RVFDAMPSKGNVHVWNLIMGG 384


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  290 bits (741), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 188/612 (30%), Positives = 290/612 (47%), Gaps = 105/612 (17%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+H  KQ H   L+ G+   T  I N LL+  +       A ++F + P  N F +N +I
Sbjct: 15  SLHQAKQCHCLLLRLGLHQDTYLI-NLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLI 73

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY---GKQIHSHILVNGL 136
            G +       ++ ++  M Q      N       KA      Y   G  +HS ++  G 
Sbjct: 74  RGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGF 133

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D+D  + + LV LY K G                                + DAR+VFD 
Sbjct: 134 DWDVFVKTGLVCLYSKNG-------------------------------FLTDARKVFDE 162

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             + + V W ++I GYI +    EAL LF  +   G+  D+ TL  +L ACS +G L  G
Sbjct: 163 IPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASG 222

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           + + G+  + G + +V VA++L+D Y+K                               C
Sbjct: 223 RWIDGYMRESGSVGNVFVATSLVDMYAK-------------------------------C 251

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G +E+A+ +F  M  K ++ W+++I G + NG P EALD+F  M + ++R D +++  V 
Sbjct: 252 GSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVF 311

Query: 377 SACANISSLELGEQVFARVTIIGLD--SDQIISTSLVDFYCKCGY--------------- 419
           SAC+ + +LELG   +AR  + G +  S+ ++ T+L+DFY KCG                
Sbjct: 312 SACSRLGALELGN--WARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKD 369

Query: 420 ------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                              A  +F +M   G++P   TF  +L  C H GLV +G ++F 
Sbjct: 370 CVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFS 429

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
            M   + + P IEHY CMVDL ARAG L EA +LI  MP EA+  +W ++L GC  H D 
Sbjct: 430 GMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDT 489

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW--A 579
            L   V +++IEL+P N+  Y+ LS+I++ S  W+++  IR  + +K + KLPGCSW   
Sbjct: 490 QLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEV 549

Query: 580 DGIAFNCWFLDT 591
           DG+       DT
Sbjct: 550 DGVVHEFLVGDT 561



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 160/338 (47%), Gaps = 37/338 (10%)

Query: 11  LLQSCNT-HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L++C    H  HVG  LH   +K G  +  + +   L+ +Y + G  TDA  +FDE+P 
Sbjct: 107 VLKACTRLPHYFHVGLSLHSLVIKTG-FDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPE 165

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFN---VMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           +N  SW A+I G+++ G   ++L LF     M  + D S+ ++   +A + +  L  G+ 
Sbjct: 166 KNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPD-SFTLVRILYACSRVGDLASGRW 224

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           I  ++  +G   +  + +SLV++Y KCG    A +V + M E D  C SALI GYA    
Sbjct: 225 IDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYA---- 280

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                                      SN    EAL +F +M+R  V  D   +  V SA
Sbjct: 281 ---------------------------SNGMPKEALDVFFEMQRENVRPDCYAMVGVFSA 313

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS LG LE G    G       + + ++ +AL+D Y+K G  + A ++F  ++  D ++ 
Sbjct: 314 CSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVF 373

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
           N +I+  + CG +  A  +F  M    +    +  VGL
Sbjct: 374 NAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGL 411



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 151/338 (44%), Gaps = 42/338 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L R+L +C+    +  G+ +  +  + G + +   +A  L+ MY +CG+  +A  +FD M
Sbjct: 206 LVRILYACSRVGDLASGRWIDGYMRESGSVGNVF-VATSLVDMYAKCGSMEEARRVFDGM 264

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGK 125
             ++   W+A+I+G+   G  +++L +F  M ++N     + M+    A + L ALE G 
Sbjct: 265 VEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGN 324

Query: 126 QIHSHILVNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
                 L++G +F  + VLG++L++ Y KCG    A +V   M+  D    +A+ISG A 
Sbjct: 325 WARG--LMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAM 382

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG +  A  VF                                +M + G+  D +T   +
Sbjct: 383 CGHVGAAFGVFG-------------------------------QMVKVGMQPDGNTFVGL 411

Query: 244 LSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-Y 301
           L  C+  G ++ G +   G +    V   +     ++D  ++ G+  +A  L   + +  
Sbjct: 412 LCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEA 471

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
           ++I+   ++         + A+H+ + +    L  WNS
Sbjct: 472 NSIVWGALLGGCRLHKDTQLAEHVLKQLIE--LEPWNS 507


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  290 bits (741), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 193/648 (29%), Positives = 309/648 (47%), Gaps = 99/648 (15%)

Query: 10  RLLQSCNTHHS--IHVGK-----QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           R L S NT  S  +H GK     +L +   ++ + + TL     ++  Y R G    A  
Sbjct: 35  RNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDLFSWTL-----MITCYTRNGEVEKARE 89

Query: 63  LFDEMP---RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA 119
           LFD +P   R+    WNAMI G++K G   ++ +LF+ MP KN  SWN +++G+ +    
Sbjct: 90  LFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKM 149

Query: 120 ALEYGKQIHSHILVNGLDF-------DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
            L             GL+F       D V  + +V+ + + GD +SA +     ++P+  
Sbjct: 150 RL-------------GLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVV 196

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
               ++SG+A  G + ++RR+FD+    + V WN+MIS Y+   E  EA  LF +M    
Sbjct: 197 SWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPE-- 254

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGH----------ACKVGVID------------ 270
              D+ +  ++++    +G L+  +++             A   G I             
Sbjct: 255 --RDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFD 312

Query: 271 -----DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
                DV+  +A++  Y+  G  ++A  L   +   D +  NTMI+ Y+  G+++ A  I
Sbjct: 313 EIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKI 372

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           F  M  + L+SWNS+I G   NG  ++AL  F  M     + D+ S A  +S+CA I++L
Sbjct: 373 FEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAAL 432

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------------------------- 419
           ++G Q+   V   G  +  +++ +L+  Y KCG                           
Sbjct: 433 QVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIGGY 492

Query: 420 -------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                  +AL LF EM + G+ P  +TF  ILSAC+H G+V  G K F  M   Y I+P 
Sbjct: 493 AINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEPL 552

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
            EHY+CMVDL  R G L+EA  ++  M  +A  G+W ++L  C AHG+  LGR  A ++ 
Sbjct: 553 AEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELGRLAAHKLS 612

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           E +P     Y+ LS+I A +  W +   +R +M      K PGCSW +
Sbjct: 613 EFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGCSWVE 660



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 206/460 (44%), Gaps = 70/460 (15%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           M  +N  ++N+MI  + K G    +  LF+ MP++N  SWN ++SG+       L  GK 
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGY-------LHNGKF 53

Query: 127 IHSHILVNGLDFDSVLGSSL-VNLYGKCGDFNSANQVLNMMK---EPDDFCLSALISGYA 182
             ++ L   +    +   +L +  Y + G+   A ++ + +         C +A+ISGY 
Sbjct: 54  DEAYKLFVIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYV 113

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             G++N+A+R+FD     + + WNSM++GY  N +    L  F++M              
Sbjct: 114 KKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDER----------- 162

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
                                       DV+  + ++D + + G    A K F E +  +
Sbjct: 163 ----------------------------DVVSWNLMVDGFIQVGDLDSAWKFFQETQKPN 194

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            +   TM++ ++  G I +++ +F  MP+++++SWN+MI    Q     EA  LF  M +
Sbjct: 195 VVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPE 254

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--D 420
                D  S  ++I+    I  L+   ++   +    + +     T+++  Y +C    +
Sbjct: 255 ----RDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQ----TAMISGYIQCNKVDE 306

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           A   F+E+    V    + + A+++   H G + E       M     ++ ++  ++ M+
Sbjct: 307 ARRFFDEIGTWDV----VCWNAMIAGYAHHGRINEALCLSKRM-----VNKDMVTWNTMI 357

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
             +A+ G ++ AV + E+M  E D+  W+S++ G + +G 
Sbjct: 358 SCYAQVGQMDRAVKIFEEMG-ERDLVSWNSLIAGFMLNGQ 396



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 182/401 (45%), Gaps = 52/401 (12%)

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
           M E +    +++IS YA  G++N AR +FD+    + V WN+M+SGY+ N +  EA  LF
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60

Query: 226 HKM---------------RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV-- 268
             M                RNG +E A  L   L      G       + G+  K  V  
Sbjct: 61  VIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNE 120

Query: 269 ---------IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
                    + ++I  +++L  Y++        + F+E+   D +  N M+  +   G +
Sbjct: 121 AKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDL 180

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           + A   F+     +++SW +M+ G ++NG+ +E+  LF  M   ++     S  ++ISA 
Sbjct: 181 DSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNI----VSWNAMISAY 236

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM--RNTGVKP 435
                ++   ++F  +     + D +  T++++ Y + G   +A  L NEM  RN G + 
Sbjct: 237 VQRCEIDEASRLFEEMP----ERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQ- 291

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
                TA++S    C  V E +++FD +  W      ++  ++ M+  +A  G +NEA+ 
Sbjct: 292 -----TAMISGYIQCNKVDEARRFFDEIGTW------DVVCWNAMIAGYAHHGRINEALC 340

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           L ++M    D+  W++++      G      K+ E M E D
Sbjct: 341 LSKRM-VNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERD 380



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 133/269 (49%), Gaps = 20/269 (7%)

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           +T+  N+MI+VY+  GRI  A+++F  MP ++L+SWN+M+ G   NG   EA  LF  M 
Sbjct: 5   NTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMP 64

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
           + DL    FS   +I+       +E   ++F  +             +++  Y K G   
Sbjct: 65  RRDL----FSWTLMITCYTRNGEVEKARELFDSLP-CSYRKGVACWNAMISGYVKKGRVN 119

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
           +A  LF+EM    VK  +I++ ++L+       ++ G ++F+ M      + ++  ++ M
Sbjct: 120 EAKRLFDEM---PVK-NLISWNSMLAGYTQNRKMRLGLEFFNEMD-----ERDVVSWNLM 170

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VD F + G L+ A    ++   + +V  W ++L G   +G+    R++ ++M      N 
Sbjct: 171 VDGFIQVGDLDSAWKFFQETQ-KPNVVSWVTMLSGFARNGNILESRRLFDQM---PSRNI 226

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++  + S +    E +++S + + M E+
Sbjct: 227 VSWNAMISAYVQRCEIDEASRLFEEMPER 255


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 188/664 (28%), Positives = 320/664 (48%), Gaps = 141/664 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK LH H LK+G  +  L   N LL  Y++  +  DA  LFDEMP+ N  S+  + +G+ 
Sbjct: 54  GKHLHCHILKRGT-SLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 84  KLGHKEKSL----QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
           +     ++L    ++F    + N F +  L+      DLA L +   +H+ +   G   D
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCW--TLHACVYKLGHHAD 170

Query: 140 SVLGSSLVNLYGKCGDFNSAN-------------------------------QVLNMMK- 167
           + +G++L++ Y   G+ + A                                Q+ N M+ 
Sbjct: 171 AFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRI 230

Query: 168 ---EPDDFCLS-----------------------------------ALISGYANCGKMND 189
              +P++F +S                                   AL+  YA  G++ D
Sbjct: 231 MGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIID 290

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A+R+F+    T  + W+ MI+ Y  ++   EAL LF +MR+  V+ +  T ASVL AC+S
Sbjct: 291 AQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACAS 350

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
              L+ GKQ+H    K G+  +V V++A++D Y+K                         
Sbjct: 351 SVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAK------------------------- 385

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                 CG IE++  +F  +P+++ ++WN++IVG  Q G    A++LF +M + D++  +
Sbjct: 386 ------CGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTE 439

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            + +SV+ A A++++LE G Q+ +       + D +++ SL+D Y KCG           
Sbjct: 440 VTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDK 499

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +AL LF+ M++T  KP  +TF  +LSAC + GL+ +G
Sbjct: 500 MNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKG 559

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
           Q  F++M   Y I P IEHY+CMV L  R G  +EA+ LI ++ ++  V +W ++L  CV
Sbjct: 560 QAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACV 619

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H    LGR  A+ ++E++P +   ++ LS+++AT+G W+  + +R  M++K V K PG 
Sbjct: 620 IHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGL 679

Query: 577 SWAD 580
           SW +
Sbjct: 680 SWVE 683



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 7/165 (4%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + Y + +L++  +  ++  G Q+H     K + N    +AN L+ MY +CG   DA L
Sbjct: 438 TEVTY-SSVLRASASLAALEPGLQIH-SLTIKTMYNKDTVVANSLIDMYAKCGRINDARL 495

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML--ISGFAKADLAA 120
            FD+M +R+  SWNAMI G+   G   ++L LF++M Q  D   N L  +   +    A 
Sbjct: 496 TFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMM-QHTDCKPNKLTFVGVLSACSNAG 554

Query: 121 LEYGKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVL 163
           L Y  Q H   +    D    +   + +V L G+ G F+ A +++
Sbjct: 555 LLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLI 599


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 194/639 (30%), Positives = 310/639 (48%), Gaps = 86/639 (13%)

Query: 15  CNTHHSIHV--GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           CN+  S H   G       + + + N ++     ++  Y   G  + A  +FDEMP R  
Sbjct: 53  CNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVT 112

Query: 73  FSWNAMIEGFMK----LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEYGK 125
            S+NAMI   +K    LG   K+ +LF  +P+KN  S+  +I+GF +A   D A   Y +
Sbjct: 113 TSYNAMITAMIKNKCDLG---KAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 126 QIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
                     + F DSV  + L++ Y + G +N A +V   M   +    S+++ GY   
Sbjct: 170 --------TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKM 221

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASV 243
           G++ DAR +FDR T+ + + W +MI GY       +   LF +MR+ G V  +++TLA +
Sbjct: 222 GRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVM 281

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
             AC        G Q+HG   ++ +  D+ + ++L+  YSK G   +A  +F  +K  D+
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS------------------ 345
           +  N++IT      +I +A  +F  MP K ++SW  MI G S                  
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEK 401

Query: 346 -------------QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
                         NG   EAL  F  M + ++  + ++ +SV+SA A+++ L  G Q+ 
Sbjct: 402 DNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIH 461

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG---------------------------------Y 419
            RV  + + +D  +  SLV  YCKCG                                  
Sbjct: 462 GRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGK 521

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
            AL LF+ + ++G +P  +TF A+LSAC H G V  G K+F +MK  Y+I+P  +HY+CM
Sbjct: 522 KALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACM 581

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VDL  R+G L++A NLI  MP +   G+W S+L     H    L    A+++IEL+P++A
Sbjct: 582 VDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSA 641

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
             Y+ LS +++  G+      I +I + K + K PG SW
Sbjct: 642 TPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSW 680


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 172/603 (28%), Positives = 287/603 (47%), Gaps = 98/603 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++C    S+  G+  H   +++ + N    + N +L+MY +CG+  DA  +FDEM  R
Sbjct: 16  LFEACGKIKSLFDGRLFHEQ-MQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRER 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGKQIH 128
           N  SWN +I  + + G  +K   +F+ M +           GF ++ L  + LE GKQIH
Sbjct: 75  NLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIH 134

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           SH + +GL  ++ + +++ N+Y KC                               G + 
Sbjct: 135 SHAIRSGLGSNASVNTAISNMYVKC-------------------------------GWLE 163

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            A  VF++ ++ ++V W  ++ GY       +AL LF KM   GV  D    + VL AC+
Sbjct: 164 GAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACA 223

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            L  L  G+Q+HGH  K+G+  +V V + L+D Y K                        
Sbjct: 224 GLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVK------------------------ 259

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  C  +E A   F  +   + +SW+++I G  Q G   EAL  F ++    + ++
Sbjct: 260 -------CSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDIN 312

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------- 419
            F+  S+  AC+ ++    G Q  A      L + Q   ++++  Y +CG          
Sbjct: 313 SFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFE 372

Query: 420 ------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +AL LF  M++ GV+P  +TF A+L+AC H GLV E
Sbjct: 373 SIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIE 432

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G+++ ++M   Y +   I+HY CMVD+++RAG L EA+ LI  MPF  D   W  +L GC
Sbjct: 433 GRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGC 492

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             + +  +G   AE + +LDPE+   YI + +++A+ G+W++++ +R +M E+++ K   
Sbjct: 493 WTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELS 552

Query: 576 CSW 578
           CSW
Sbjct: 553 CSW 555


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 194/639 (30%), Positives = 310/639 (48%), Gaps = 86/639 (13%)

Query: 15  CNTHHSIHV--GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           CN+  S H   G       + + + N ++     ++  Y   G  + A  +FDEMP R  
Sbjct: 53  CNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVT 112

Query: 73  FSWNAMIEGFMK----LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEYGK 125
            S+NAMI   +K    LG   K+ +LF  +P+KN  S+  +I+GF +A   D A   Y +
Sbjct: 113 TSYNAMITAMIKNKCDLG---KAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 126 QIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
                     + F DSV  + L++ Y + G +N A +V   M   +    S+++ GY   
Sbjct: 170 --------TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKM 221

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASV 243
           G++ DAR +FDR T+ + + W +MI GY       +   LF +MR+ G V  +++TLA +
Sbjct: 222 GRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVM 281

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
             AC        G Q+HG   ++ +  D+ + ++L+  YSK G   +A  +F  +K  D+
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS------------------ 345
           +  N++IT      +I +A  +F  MP K ++SW  MI G S                  
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEK 401

Query: 346 -------------QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
                         NG   EAL  F  M + ++  + ++ +SV+SA A+++ L  G Q+ 
Sbjct: 402 DNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIH 461

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG---------------------------------Y 419
            RV  + + +D  +  SLV  YCKCG                                  
Sbjct: 462 GRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGK 521

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
            AL LF+ + ++G +P  +TF A+LSAC H G V  G K+F +MK  Y+I+P  +HY+CM
Sbjct: 522 KALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACM 581

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VDL  R+G L++A NLI  MP +   G+W S+L     H    L    A+++IEL+P++A
Sbjct: 582 VDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSA 641

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
             Y+ LS +++  G+      I +I + K + K PG SW
Sbjct: 642 TPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSW 680


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 183/608 (30%), Positives = 306/608 (50%), Gaps = 76/608 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR-CGNPTDALLLFDEMPR 69
           LL++CNT + I+   Q+H   +K G+ ++ L +   ++    +  G+   A  +FDE+P+
Sbjct: 41  LLETCNTMYEIN---QIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQ 97

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLAALEYGK 125
            + F WN MI+G+ ++   E  + L+ +M   N     F++  L+ GF K    AL+YGK
Sbjct: 98  PSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKD--MALKYGK 155

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            + +H +++G      L S+L                         F     I  ++ CG
Sbjct: 156 VLLNHAVIHGF-----LDSNL-------------------------FVQKGFIHLFSLCG 185

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG--VLEDASTLASV 243
            +N AR++FD       V WN ++SGY       E+  LF +M +    V  ++ TL  +
Sbjct: 186 LVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLM 245

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           LSACS L  L  GK ++    K G+++ ++I+ +AL+D ++  G    A  +F E+K  D
Sbjct: 246 LSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRD 305

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            I   +++T +++  RI+ A+  F  MP +  +SW +MI G  +     E L LF +M  
Sbjct: 306 VISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQM 365

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
            +++ D+F++ S+++ACA++ +LELGE     +    + +D  I  +L+D Y KCG    
Sbjct: 366 SNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEK 425

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +AL +F+ M    V P  IT+  ++ AC H
Sbjct: 426 AKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTH 485

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV +G+ +F  M  Q+ I P + HY CMVDL  RAG L EA+ +I  MP + +  +W 
Sbjct: 486 VGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWG 545

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           S+L  C  H +  L    A  ++EL+PEN   Y+ L +I+A   +W+    +R +M E+ 
Sbjct: 546 SLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERG 605

Query: 570 VGKLPGCS 577
           + K+PGCS
Sbjct: 606 IKKIPGCS 613



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 140/327 (42%), Gaps = 65/327 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    +  GK ++  ++K+GI+   L + N L+ M+  CG    A  +FDEM
Sbjct: 242 LVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEM 301

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
             R+  SW +++ GF      + + + F+ MP+++  SW  +I G+ +            
Sbjct: 302 KTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFR 361

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                A L ALE G+   ++I  N +  D+ +G++L+++Y KCG
Sbjct: 362 DMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCG 421

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
           +   A ++ N M++ D F  +A+I G AN                               
Sbjct: 422 NVEKAKKIFNEMQKKDKFTWTAMIVGLAN------------------------------- 450

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVI 273
           N    EAL +F  M    V  D  T   V+ AC+ +G +  GK    + A + G+  ++ 
Sbjct: 451 NGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLT 510

Query: 274 VASALLDTYSKRGMPSDACKLFSELKV 300
               ++D   + G   +A ++   + V
Sbjct: 511 HYGCMVDLLGRAGHLKEALEVIMNMPV 537


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/557 (31%), Positives = 281/557 (50%), Gaps = 72/557 (12%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAK 115
           A+ +F  +   N   WN M+ G+        +L+L+ VM       N +++  L+   AK
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           +   A E G+QIH H+L  G + D  + +SL+++Y + G    A++V +     D    +
Sbjct: 79  SK--AFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYT 136

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           ALI+GYA+ G +  A+ +FD       V WN+MISGY       EAL LF +M +  V  
Sbjct: 137 ALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRP 196

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  T+ +VLSAC+    +E G+QVH        IDD    S L                 
Sbjct: 197 DEGTMVTVLSACAQSRSVELGRQVHS------WIDDHGFGSNLK---------------- 234

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                    ++N +I +YS CG++E A  +F  +  K ++SWN++I G +      EAL 
Sbjct: 235 ---------IVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALL 285

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDF 413
           LF  M +     +  ++ S++ ACA++ ++++G    V+    +  + +   + TSL+D 
Sbjct: 286 LFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDM 345

Query: 414 YCKCG-------------------YDALA--------------LFNEMRNTGVKPTIITF 440
           Y KCG                   ++A+               LF+ MR  G++P  ITF
Sbjct: 346 YAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITF 405

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H G +  G+  F +M   Y I P++EHY CM+DL   +G   EA  +I+ MP
Sbjct: 406 VGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMP 465

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E D  +W S+L+ C  HG+  L    A  +++++PEN  +Y+ LS+I+AT+GEW++ + 
Sbjct: 466 MEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAK 525

Query: 561 IRDIMREKHVGKLPGCS 577
           +R ++  K + K+PGCS
Sbjct: 526 VRALLNGKGMKKVPGCS 542



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 234/501 (46%), Gaps = 62/501 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H H LK G     L +   L+ MY + G   DA  +FD    R
Sbjct: 72  LLKSCAKSKAFEEGQQIHGHVLKLG-YEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR 130

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +  S+ A+I G+   G+   + ++F+ +P K+  SWN +ISG+A+    + +   ++   
Sbjct: 131 DVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAET--GSYKEALELFKE 188

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF-------CLSALISGYAN 183
           ++   +  D     ++V +   C    S      +    DD         ++ALI  Y+ 
Sbjct: 189 MMKTNVRPDE---GTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSK 245

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG++  A  +F+  +    V WN++I GY   N   EALLLF +M R+G   +  T+ S+
Sbjct: 246 CGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSI 305

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L AC+ LG ++ G+ +H           V +   L D  +    PS              
Sbjct: 306 LPACAHLGAIDIGRWIH-----------VYIDKKLKDVTNA---PS-------------- 337

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
            L  ++I +Y+ CG IE A  +F +M +KSL SWN+MI G + +G      DLF  M K 
Sbjct: 338 -LRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKN 396

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDAL- 422
            +  D  +   ++SAC++   L+LG  +F  +T      D  I+  L  + C    D L 
Sbjct: 397 GIEPDDITFVGLLSACSHSGKLDLGRHIFKSMT-----QDYDITPKLEHYGCMI--DLLG 449

Query: 423 --ALFNE----MRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIE- 474
              LF E    ++   ++P  + + ++L AC   G ++  + +  + MK    ++PE   
Sbjct: 450 HSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMK----VEPENPG 505

Query: 475 HYSCMVDLFARAGCLNEAVNL 495
            Y  + +++A AG  +E   +
Sbjct: 506 SYVLLSNIYATAGEWDEVAKV 526


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 180/608 (29%), Positives = 300/608 (49%), Gaps = 103/608 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     + +G+ +H   +K+G++   + + + L+ MY +C     A+ LFDEMP +
Sbjct: 112 VLKACGGLRRVVLGQMIHTCLVKEGLMVDIV-VGSSLVGMYAKCNEFECAVKLFDEMPDK 170

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +   WN +I  + + G  E++L+ F +M     + +  +    IS  A+  L  L+ G++
Sbjct: 171 DVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCAR--LLDLDRGRE 228

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  ++ +G   DS + ++LV++                               Y  CG+
Sbjct: 229 IHKELVNSGFRMDSFVSAALVDM-------------------------------YGKCGQ 257

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  A  VF++  + + V WNSMI+GY    +    + LF +M   GV    +TL S L A
Sbjct: 258 LEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMA 317

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS    L  GK VHG+  +  +  D+ + S+L+D Y K                      
Sbjct: 318 CSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFK---------------------- 355

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG++E A+ IF+ MP  + +SWN MI G    G   +AL LF  M+K  + 
Sbjct: 356 ---------CGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVE 406

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  +  SV++AC+ +++LE G ++   +    L +++++  +L+D Y KCG        
Sbjct: 407 PDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGV 466

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                    Y+AL LF EM  + VKP  +TF AILSAC H GLV
Sbjct: 467 FKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLV 526

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMWSSIL 512
            +G   F+ M   Y I P IEHYSC++ L  RAG L+EA  +++  P    D  + S++ 
Sbjct: 527 DDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLF 586

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H +  LG ++AE +I+ DP+++  YI LS+++A+ G+W++  ++R  M++  + K
Sbjct: 587 SACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKK 646

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 647 NPGCSWIE 654



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 142/560 (25%), Positives = 247/560 (44%), Gaps = 112/560 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD R   L  LL++     S+  GK LH   +  G+ N    +   L+ +Y+ C     A
Sbjct: 1   MDAR--KLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVY-VCKNLISLYVSCNLFDYA 57

Query: 61  LLLFDEMPRRNCFSW---NAMIEGFMKLGHKEKSLQLFNVM---P--QKNDFSWNMLISG 112
             +FD +   N F     N ++ G+ +    +++L LF+ +   P  + + +++  ++  
Sbjct: 58  KNVFDVI--ENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLK- 114

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
            A   L  +  G+ IH+ ++  GL  D V+GSSLV +Y KC +F  A ++ + M + D  
Sbjct: 115 -ACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVA 173

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
           C + +IS Y   GK                                 EAL  F  MRR G
Sbjct: 174 CWNTVISCYYQSGKFE-------------------------------EALRYFGMMRRFG 202

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
              D+ T+ + +S+C+ L  L+ G+++H      G   D  V++AL+D Y K G      
Sbjct: 203 FEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCG------ 256

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
                                    ++E A  +F  MPNK++++WNSMI G    G  I 
Sbjct: 257 -------------------------QLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGIS 291

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
            + LF  M    ++    +L S + AC+  + L  G+ V   +    +  D  +++SL+D
Sbjct: 292 CIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMD 351

Query: 413 FYCKCG---------------------------------YDALALFNEMRNTGVKPTIIT 439
            Y KCG                                 +DAL LF EM  + V+P  IT
Sbjct: 352 LYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAIT 411

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           FT++L+AC     +++G++  + +  +   + E+     ++D++A+ G + EA  + + +
Sbjct: 412 FTSVLAACSQLAALEKGREIHNLIVERNLGNNEVV-MGALLDMYAKCGAVEEAFGVFKCL 470

Query: 500 PFEADVGMWSSILRGCVAHG 519
           P E D+  W+S++    +HG
Sbjct: 471 P-ERDLVSWTSMITAYGSHG 489


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 185/604 (30%), Positives = 300/604 (49%), Gaps = 71/604 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C+   ++  G Q+H   LK G L   + ++N L+  Y  CG       LFD M  R
Sbjct: 136 LLSACSKILALSEGVQVHGAVLKMG-LEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLER 194

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
           N  SW ++I G+      ++++ LF  M +     N  +   +IS  AK  L  LE GK+
Sbjct: 195 NVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAK--LKDLELGKK 252

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           + S+I   G++  +++ ++LV++Y KCG                D C             
Sbjct: 253 VCSYISELGMELSTIMVNALVDMYMKCG----------------DICA------------ 284

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
              AR++FD   + + VM+N+++S Y+ +   ++ L++  +M + G   D  T+ S ++A
Sbjct: 285 ---ARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAA 341

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ LG L  GK  H +  + G+     +++A++D Y K G    ACK+F  +     +  
Sbjct: 342 CAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTW 401

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N++I      G +E A  IF  M  + L+SWN+MI  L Q     EA++LF  M    + 
Sbjct: 402 NSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIP 461

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D+ ++  + SAC  + +L+L + V   +    +  D  + T+LVD + +CG        
Sbjct: 462 GDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHV 521

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                      A+ LFNEM    VKP  + F A+L+AC H G V
Sbjct: 522 FKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSV 581

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G++ F +M+  + I P I HY CMVDL  RAG L EAV+LI+ MP E +  +W S+L 
Sbjct: 582 DQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLA 641

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  L    AE++ +L PE    ++ LS+I+A++G+W   + +R  M+EK V K+
Sbjct: 642 ACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKV 701

Query: 574 PGCS 577
           PG S
Sbjct: 702 PGSS 705



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 179/404 (44%), Gaps = 79/404 (19%)

Query: 174 LSALISGYANCGKMND---ARRVF--DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           L+ LI+     G +     AR  F  D     S  M+N +I GY S     +A+LL+ +M
Sbjct: 62  LNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQM 121

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
              G++ D  T   +LSACS +  L  G QVHG   K+G+  D+ V+             
Sbjct: 122 LVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVS------------- 168

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                             N++I  Y+ CG+++  + +F  M  ++++SW S+I G S   
Sbjct: 169 ------------------NSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRD 210

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              EA+ LF  M +  +  +  ++  VISACA +  LELG++V + ++ +G++   I+  
Sbjct: 211 LSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVN 270

Query: 409 SLVDFYCKCG---------------------------------YDALALFNEMRNTGVKP 435
           +LVD Y KCG                                  D L + +EM   G +P
Sbjct: 271 ALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRP 330

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY----SCMVDLFARAGCLNE 491
             +T  + ++AC   G +  G+         Y +   +E +    + ++D++ + G    
Sbjct: 331 DKVTMLSTIAACAQLGDLSVGKS-----SHAYVLRNGLEGWDNISNAIIDMYMKCGKREA 385

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           A  + E MP +  V  W+S++ G V  GD  L  ++ + M+E D
Sbjct: 386 ACKVFEHMPNKTVV-TWNSLIAGLVRDGDMELAWRIFDEMLERD 428


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 179/607 (29%), Positives = 293/607 (48%), Gaps = 100/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQS     S   G+QLH H +   IL +   +  +L   Y  CG  + A ++FD +  +
Sbjct: 65  LLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLK 124

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           N F WN MI G+   G   KSL L+  M     + ++F++  ++   A  DL  +E G++
Sbjct: 125 NSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLK--ACGDLLLVEIGRR 182

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +HS ++V GL+ D  +G+SL+ +Y K GD  +A  V + M E D    + +ISGYA    
Sbjct: 183 VHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAK--- 239

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                                       N +   A L+F  M + G+  D +TL  +LSA
Sbjct: 240 ----------------------------NADSGTAFLVFDLMGKAGLFADCTTLLGLLSA 271

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ L  ++ GK +HG+A +                              + +  Y+    
Sbjct: 272 CADLKAVKEGKVIHGYAVR------------------------------NSIGNYNKFFT 301

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N++I +Y +C  + DA+ +F  +  K  +SWNSMI+G ++NG   E+L LF  M      
Sbjct: 302 NSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSG 361

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------- 417
            D+ +  +V+ AC  I++L  G  + + +   G D++ I+ T+LVD Y KC         
Sbjct: 362 PDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRV 421

Query: 418 ------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                   G +A+++ + M+   V P    FT+ILSAC H GLV
Sbjct: 422 FDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLV 481

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            EG++ F  M+ +Y++ P + HYSCMVDL  RAG L+EA  +I  M  +    +W+++L 
Sbjct: 482 VEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLT 541

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
               H +  L    A+++ +++P+   +YI LS+I+A    W+    +R ++R K + K 
Sbjct: 542 ASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKS 601

Query: 574 PGCSWAD 580
           PGCS+ +
Sbjct: 602 PGCSFIE 608



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 207/490 (42%), Gaps = 82/490 (16%)

Query: 103 DFSWNMLISGFAKADLAAL-EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
           D  +N   S F++ D+A + E    +  H L       S+   +L+  +     F    Q
Sbjct: 22  DREYNSFTSHFSQGDVAQMVERSLSMREHPL-QQYPLTSLQCGALLQSFTNTKSFKQGQQ 80

Query: 162 VLNMMK-----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
           +   M      E + +  + L + YA CG M+ A  +FD     +S +WN MI GY SN 
Sbjct: 81  LHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNG 140

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
              ++L+L+ +M   G   D  T   VL AC  L  +E G++VH      G+  D+ V +
Sbjct: 141 LPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGN 200

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           +LL  Y+K G    A  +F  +                                 + L S
Sbjct: 201 SLLAMYAKFGDMGTARMVFDRM-------------------------------AERDLTS 229

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV--FAR 394
           WN+MI G ++N     A  +F  M K  L  D  +L  ++SACA++ +++ G+ +  +A 
Sbjct: 230 WNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAV 289

Query: 395 VTIIGLDSDQIISTSLVDFYCKC---------------------------------GYDA 421
              IG + ++  + SL++ YC C                                  +++
Sbjct: 290 RNSIG-NYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFES 348

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           L LF  M   G  P  +TF A+L ACD    ++ G      +  +   D      + +VD
Sbjct: 349 LRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLV-KKGFDANTIVGTALVD 407

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
           ++++ G L  +  + ++MP ++ V  WS+++ G   +G  G GR   E +  LD   A +
Sbjct: 408 MYSKCGSLACSRRVFDEMPDKSLVS-WSAMVAG---YGLHGRGR---EAISILDGMKANS 460

Query: 542 YIQLSSIFAT 551
            I  + +F +
Sbjct: 461 VIPDNGVFTS 470


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 174/575 (30%), Positives = 274/575 (47%), Gaps = 101/575 (17%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK- 101
           + + L+ MY + G   DA  +FD +P RN  SW  +I G+       ++ +LF +M ++ 
Sbjct: 150 VGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREE 209

Query: 102 ---NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
              + F +  ++S     DL  + YGKQIH   L NGL   + +G++LV +YGK      
Sbjct: 210 GAHDKFIYTSVLSALTVPDL--VHYGKQIHCLALKNGLLSIASVGNALVTMYGK------ 261

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
                                    CG ++DA + F+ + D   + W++MI+GY    + 
Sbjct: 262 -------------------------CGCLDDALKTFELSGDKDDITWSAMITGYAQAGDS 296

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            EAL LF+ M  NG      T   V++ACS +G LE GKQ+HG++ K G    +   +AL
Sbjct: 297 HEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTAL 356

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +D Y+K                               CG + DA+  F  +    ++ W 
Sbjct: 357 VDMYAK-------------------------------CGSLVDARKGFDYLKEPDIVLWT 385

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           SMI G +QNG    AL L+C M    +   + ++ASV+ AC+++++LE G+Q+ A+    
Sbjct: 386 SMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKY 445

Query: 399 GLDSDQIISTSLVDFYCKCG---------------------------------YDALALF 425
           G   +  I ++L   Y KCG                                   AL LF
Sbjct: 446 GFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELF 505

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            E+R+   KP  +TF  +LSAC H GLV+ G+ +F  M  ++ I P +EHY+CMVD+ +R
Sbjct: 506 EELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSR 565

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545
           AG L+E    IE    +  + +W  +L  C  + +  LG    E+++EL  + + AYI L
Sbjct: 566 AGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILL 625

Query: 546 SSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           SSI+   G  +    +R +M+ + V K PGCSW +
Sbjct: 626 SSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIE 660



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 151/561 (26%), Positives = 235/561 (41%), Gaps = 105/561 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C     +  GK +H   L+ G   S++ + N L+ +Y +CG+   A L+F+ +  +
Sbjct: 16  LLLRCTRQKDLQKGKAIHAQLLRTGSF-SSVYLTNSLVNLYAKCGSIVKAKLVFESITNK 74

Query: 71  NCFSWNAMIEGFMKLGHKEKS--LQLFNVMPQKNDFSWNMLISGFAKADLAALEY--GKQ 126
           +  SWN +I G+ + G    S  ++LF  M  +N        SG   A  ++ E   G Q
Sbjct: 75  DVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQ 134

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
            H+  +     +D  +GSSL+N+Y K                                G 
Sbjct: 135 AHALAIKTSNFYDVFVGSSLINMYCKI-------------------------------GC 163

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           M DAR+VFD   + ++V W ++ISGY       EA  LF  MRR     D     SVLSA
Sbjct: 164 MLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSA 223

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            +    + +GKQ+H  A K G++    V +AL+  Y K G   DA K F      D I  
Sbjct: 224 LTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITW 283

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           + MIT                               G +Q G   EAL+LF NM+    +
Sbjct: 284 SAMIT-------------------------------GYAQAGDSHEALNLFYNMHLNGNK 312

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------G 418
             +F+   VI+AC++I +LE G+Q+       G +      T+LVD Y KC        G
Sbjct: 313 PSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKG 372

Query: 419 YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
           +D                         AL L+  M+   + P  +T  ++L AC     +
Sbjct: 373 FDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAAL 432

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           ++G K   A   +Y    E+   S +  ++A+ G L +   +  +MP   D+  W++++ 
Sbjct: 433 EQG-KQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMP-SRDIMTWNAMIS 490

Query: 514 GCVAHGDKGLGRKVAERMIEL 534
           G   +G+   G K  E   EL
Sbjct: 491 GLSQNGE---GLKALELFEEL 508



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 188/465 (40%), Gaps = 105/465 (22%)

Query: 92  LQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLY 150
           + L+ + PQ   F  ++L+    + DL   + GK IH+ +L  G  F SV L +SLVNLY
Sbjct: 1   MNLYLLPPQHRSFV-DLLLRCTRQKDL---QKGKAIHAQLLRTG-SFSSVYLTNSLVNLY 55

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
            KCG    A  V                               F+  T+   V WN +I+
Sbjct: 56  AKCGSIVKAKLV-------------------------------FESITNKDVVSWNCLIN 84

Query: 211 GYISNNEDTEALL--LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           GY        + +  LF +MR    L +  T + V +A SS      G Q H  A K   
Sbjct: 85  GYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSN 144

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
             DV V S+L++ Y K G   DA K                               +F T
Sbjct: 145 FYDVFVGSSLINMYCKIGCMLDARK-------------------------------VFDT 173

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           +P ++ +SW ++I G +      EA +LF  M + +   DKF   SV+SA      +  G
Sbjct: 174 IPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYG 233

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------------ 418
           +Q+       GL S   +  +LV  Y KCG                              
Sbjct: 234 KQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQA 293

Query: 419 ---YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
              ++AL LF  M   G KP+  TF  +++AC   G ++EG K       +   + +I  
Sbjct: 294 GDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEG-KQIHGYSLKAGYECQIYF 352

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
            + +VD++A+ G L +A    + +  E D+ +W+S++ G   +G+
Sbjct: 353 MTALVDMYAKCGSLVDARKGFDYLK-EPDIVLWTSMISGYAQNGE 396



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 147/357 (41%), Gaps = 70/357 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C+   ++  GKQ+H + LK G     +     L+ MY +CG+  DA   FD +   
Sbjct: 321 VINACSDIGALEEGKQIHGYSLKAG-YECQIYFMTALVDMYAKCGSLVDARKGFDYLKEP 379

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           +   W +MI G+ + G  E +L L+  M  +      + ++   +A   LAALE GKQIH
Sbjct: 380 DIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIH 439

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           +  +  G   +  +GS+L  +Y KCG     N V   M   D    +A+ISG +      
Sbjct: 440 AQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQ----- 494

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                                     N E  +AL LF ++R      D  T  +VLSACS
Sbjct: 495 --------------------------NGEGLKALELFEELRHGTTKPDYVTFVNVLSACS 528

Query: 249 SLGFLEHGK--------------QVHGHACKVGVIDDV--------IVASALLD------ 280
            +G +E GK              +V  +AC V ++            + SA +D      
Sbjct: 529 HMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLW 588

Query: 281 --------TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
                    Y    + + A +   EL   ++     + ++Y++ GR +D + + R M
Sbjct: 589 RILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLM 645



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L++C++  ++  GKQ+H   +K G  +  +PI + L  MY +CG+  D  L+F  M
Sbjct: 419 MASVLRACSSLAALEQGKQIHAQTIKYG-FSLEVPIGSALSTMYAKCGSLEDGNLVFRRM 477

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           P R+  +WNAMI G  + G   K+L+LF 
Sbjct: 478 PSRDIMTWNAMISGLSQNGEGLKALELFE 506


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 169/600 (28%), Positives = 298/600 (49%), Gaps = 78/600 (13%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N+ +  +MR G+   AL +F+ MPRR+  S+NAMI G+++      +  LF+ MP+++ F
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLF 112

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SWN++++G+ +     L   +++   +     + D V  +SL++ Y + G  + A +V +
Sbjct: 113 SWNVMLTGYVRN--CRLGDARRLFDLMP----EKDVVSWNSLLSGYAQNGYVDEAREVFD 166

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
            M E +    + L++ Y + G++ +A  +F+  +D   + WN ++ G++   +  +A  L
Sbjct: 167 NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
           F KM     + DA +  +++S  +  G L   +++   +       DV   +A++  Y +
Sbjct: 227 FDKM----PVRDAISWNTMISGYAQGGGLSQARRLFDES----PTRDVFTWTAMVSGYVQ 278

Query: 285 RGMPSDACKLFSELK-----VYDTIL--------------------------LNTMITVY 313
            GM  +A   F E+       Y+ ++                           NTMIT Y
Sbjct: 279 NGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGY 338

Query: 314 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
              G I  A+  F  MP +  +SW ++I G +Q+G   EAL++F  + +    +++ +  
Sbjct: 339 GQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFG 398

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------- 418
             +S CA+I++LELG+Q+  +   +G  +   +  +L+  Y KCG               
Sbjct: 399 CALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEK 458

Query: 419 ------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                               AL +F  M+  GVKP  IT   +LSAC H GL+  G ++F
Sbjct: 459 DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYF 518

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
            +M   Y + P  +HY+CM+DL  RAG L EA +LI  MPF+     W ++L     HG+
Sbjct: 519 YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN 578

Query: 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             LG K AE + +++P+N+  Y+ LS+++A SG W  +  +R  MR+  V K+PG SW +
Sbjct: 579 TELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVE 638



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 134/585 (22%), Positives = 241/585 (41%), Gaps = 100/585 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y + G+   A   FD MP+R+C SW A+I G+ + GH E++L +F  + Q  + 
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGE- 390

Query: 105 SWNMLISGFAK---ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
           S N    G A    AD+AALE GKQIH   +  G      +G++L+ +Y KCG  + AN 
Sbjct: 391 SLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAND 450

Query: 162 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM-ISGYISNNEDTE 220
               ++E D    + +++GYA  G    A  VF+ +  T+ V  + + + G +S    T 
Sbjct: 451 TFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE-SMKTAGVKPDEITMVGVLSACSHTG 509

Query: 221 AL----LLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVID-DVI 273
            L      F+ M ++ GV+  +     ++      G LE  +  +     + G      +
Sbjct: 510 LLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGAL 569

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM---- 329
           + ++ +   ++ G    A ++  +++  ++ +   +  +Y++ GR  DA  +   M    
Sbjct: 570 LGASRIHGNTELG--EKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIG 627

Query: 330 ----PNKSLISWNSMIVGLS-QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
               P  S +   + I   S  + S  E   ++  + +LDL+M +    S+     +   
Sbjct: 628 VQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVE 687

Query: 385 LELGEQV-----------FARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGV 433
            E  E +           F  +TI G    +++    V   C+  + A+   +++    V
Sbjct: 688 EEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRV---CEDCHSAIKHISKI----V 740

Query: 434 KPTIIT--------FTAILSACD------------HCGLVKEGQKWFDAMKWQYHIDPEI 473
              II         F     +C             + GL+  G ++F  M  +Y + P  
Sbjct: 741 GRLIILRDSHRFHHFNEGFCSCGDYWLQFFLLVVIYTGLLDTGAEYFYPMNEEYSVTPTS 800

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           +HY+CM+DL  R   L E                  ++L     HG+  LG K A+   +
Sbjct: 801 KHYTCMIDLLGRVDRLEEG-----------------ALLGASRIHGNTELGEKAAQMFFK 843

Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           + P+N+                         MR+  V K+PG SW
Sbjct: 844 MGPQNSGI---------------------SKMRDVGVQKVPGYSW 867



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 188/436 (43%), Gaps = 60/436 (13%)

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D D +  +  ++ + + G  +SA  V N M        +A+ISGY    K N AR +FD+
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             +     WN M++GY+ N    +A  LF  M      +D  +  S+LS  +  G+++  
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPE----KDVVSWNSLLSGYAQNGYVDEA 161

Query: 257 KQVHGHACKVGVID---------------------------DVIVASALLDTYSKRGMPS 289
           ++V  +  +   I                            D+I  + L+  + ++    
Sbjct: 162 REVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLG 221

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA  LF ++ V D I  NTMI+ Y+  G +  A+ +F   P + + +W +M+ G  QNG 
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281

Query: 350 PIEALDLFCNMNKLD-----------LRMDKFSLASVI---SACANISSL--------EL 387
             EA   F  M + +           ++  K  +A  +     C NISS         ++
Sbjct: 282 LDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQI 341

Query: 388 GEQVFARVTIIGLDSDQIIS-TSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAIL 444
           G+   AR     +     +S  +++  Y + G+  +AL +F E++  G      TF   L
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401

Query: 445 SACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           S C     ++ G++    A+K  Y     +   + ++ ++ + G ++EA +  E +  E 
Sbjct: 402 STCADIAALELGKQIHGQAVKMGYGTGCFVG--NALLAMYFKCGSIDEANDTFEGIE-EK 458

Query: 504 DVGMWSSILRGCVAHG 519
           DV  W+++L G   HG
Sbjct: 459 DVVSWNTMLAGYARHG 474



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   +K G       + N LL MY +CG+  +A   F+ +  ++
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCF-VGNALLAMYFKCGSIDEANDTFEGIEEKD 459

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQ-IH 128
             SWN M+ G+ + G   ++L +F  M         + + G   A      L+ G +  +
Sbjct: 460 VVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFY 519

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISG---YANC 184
           S     G+   S   + +++L G+ G    A  ++ NM  +P      AL+     + N 
Sbjct: 520 SMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNT 579

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                A  +  +    +S M+  + + Y ++    +A  +  KMR  GV
Sbjct: 580 ELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGV 628


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 194/639 (30%), Positives = 310/639 (48%), Gaps = 86/639 (13%)

Query: 15  CNTHHSIHV--GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           CN+  S H   G       + + + N ++     ++  Y   G  + A  +FDEMP R  
Sbjct: 53  CNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVT 112

Query: 73  FSWNAMIEGFMK----LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEYGK 125
            S+NAMI   +K    LG   K+ +LF  +P+KN  S+  +I+GF +A   D A   Y +
Sbjct: 113 TSYNAMITAMIKNKCDLG---KAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 126 QIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
                     + F DSV  + L++ Y + G +N A +V   M   +    S+++ GY   
Sbjct: 170 --------TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKM 221

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASV 243
           G++ DAR +FDR T+ + + W +MI GY       +   LF +MR+ G V  +++TLA +
Sbjct: 222 GRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVM 281

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
             AC        G Q+HG   ++ +  D+ + ++L+  YSK G   +A  +F  +K  D+
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS------------------ 345
           +  N++IT      +I +A  +F  MP K ++SW  MI G S                  
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEK 401

Query: 346 -------------QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
                         NG   EAL  F  M + ++  + ++ +SV+SA A+++ L  G Q+ 
Sbjct: 402 DNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIH 461

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG---------------------------------Y 419
            RV  + + +D  +  SLV  YCKCG                                  
Sbjct: 462 GRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGK 521

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
            AL LF+ + ++G +P  +TF A+LSAC H G V  G K+F +MK  Y+I+P  +HY+CM
Sbjct: 522 KALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACM 581

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VDL  R+G L++A NLI  MP +   G+W S+L     H    L    A+++IEL+P++A
Sbjct: 582 VDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSA 641

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
             Y+ LS +++  G+      I +I + K + K PG SW
Sbjct: 642 TPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSW 680


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 179/620 (28%), Positives = 301/620 (48%), Gaps = 109/620 (17%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG-NPTD 59
           +  + +  A LLQ+C    S   G Q H H +K G L +   + N LL +Y + G +  +
Sbjct: 56  ISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSG-LETDRNVGNSLLSLYFKLGPDMRE 114

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK 115
              +FD M  ++  SW +M+ G++      K+L++F  M     Q N F+ +  +   A 
Sbjct: 115 TRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVK--AC 172

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
            +L  +  G+  H  ++ +G +++ V+ S+L  +YG             + KEP D    
Sbjct: 173 FELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYG-------------VNKEPVD---- 215

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVL 234
                         ARRVFD   +   + W +++S +  N+   EAL LF+ M R  G++
Sbjct: 216 --------------ARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLV 261

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D ST  +VL+AC +L  L+ GK++HG     G+  +V+V S+LLD Y K          
Sbjct: 262 PDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGK---------- 311

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                 G + +A+ +F  MP K+++SW++++ G  QNG   +A+
Sbjct: 312 ---------------------SGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAI 350

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           ++F  M + DL    +   +V+ ACA ++++ LG+++  +    G   + I+ ++L+D Y
Sbjct: 351 EMFREMEEKDL----YCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLY 406

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            K G                                  +A++ FN+M   G+KP  I+F 
Sbjct: 407 GKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFI 466

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           A+L+AC H GLV+EG+ +F  M   Y I P  EHYSCM+DL  RAG   EA NL+++   
Sbjct: 467 AVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAEC 526

Query: 502 EADVGMWSSILRGCVAHGD-KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
             D  +W  +L  C A+ D   +  ++A+RM+EL+P+   +Y+ LS+++   G    +  
Sbjct: 527 RNDASLWGVLLGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALK 586

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           IR +M  + V K  G SW D
Sbjct: 587 IRKLMVRRGVAKTVGQSWID 606



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 144/351 (41%), Gaps = 66/351 (18%)

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
           T+A+ + +    + +   ++  AS+L  C  +    HG Q H H  K G+  D  V ++L
Sbjct: 42  TDAIRILNSTHSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSL 101

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L  Y K G P                              + + + +F  M  K  ISW 
Sbjct: 102 LSLYFKLG-PD-----------------------------MRETRRVFDGMFVKDAISWT 131

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           SM+ G   +   ++AL++F  M    L+ +KF+L+S + AC  +  + LG      V   
Sbjct: 132 SMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITH 191

Query: 399 GLDSDQIISTSLVDFYC--KCGYDALALFNEM---------------------------- 428
           G + + +IS++L   Y   K   DA  +F+EM                            
Sbjct: 192 GFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLF 251

Query: 429 ----RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
               R  G+ P   TF  +L+AC +   +K+G++    +     I   +   S ++D++ 
Sbjct: 252 YAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNVVVESSLLDMYG 310

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           ++G + EA  +   MP   ++  WS++L G   +G+     ++   M E D
Sbjct: 311 KSGSVREARQVFNGMP-RKNIVSWSALLGGYCQNGEHEKAIEMFREMEEKD 360


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 163/444 (36%), Positives = 237/444 (53%), Gaps = 33/444 (7%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D F  +AL+  YA CG + DAR+VFD       V W  M+  Y       EALL F KM+
Sbjct: 104 DGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMK 163

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
            +GVL D   LA+VLSAC  +  L  GK +H +     ++ +  ++SAL++ Y+      
Sbjct: 164 NSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASME 223

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
            A KL++ +   D +    M+  Y+   + E A++IF  MP K ++SW++MI G + +  
Sbjct: 224 MAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQ 283

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           P EAL LF +M +  +R D+ ++ SVISACAN+ SL+  + + A +   GL+    I  +
Sbjct: 284 PNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNA 343

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           L+D + KCG                                   AL LF +MRN GV+P 
Sbjct: 344 LIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPN 403

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            +TF  +L AC H GLV EG+  F +M  QY I+P+ EHY CMVDL  RA  + EAVNLI
Sbjct: 404 EVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLI 463

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
           E M    +V +W S+L  C  HGD  LG   A+++++LDP +  A + LS I+  S    
Sbjct: 464 ESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLSKIYMKSDNLN 523

Query: 557 KSSLIRDIMREKHVGKLPGCSWAD 580
            +  +RD+M+ + V K  G SW D
Sbjct: 524 DAQEVRDVMKLQGVSKETGLSWMD 547



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 221/467 (47%), Gaps = 43/467 (9%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L+  Y  CG   DA  +FD M  R+  SW  M++ + +  + +++L  F  M    
Sbjct: 107 VRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSG 166

Query: 103 DFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
             S  ++++    A   +  L  GK IHS++LV+ +  ++ L S+L+NLY  C     A 
Sbjct: 167 VLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAE 226

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           ++ N M   D    +A++ GYA   K   AR +FD   +   V W++MISGY  +N+  E
Sbjct: 227 KLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNE 286

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL LF+ M+  G+  D  T+ SV+SAC++LG L+  K +H      G+   + + +AL+D
Sbjct: 287 ALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALID 346

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            ++K G  + A  +F+E+                               P K++I+W SM
Sbjct: 347 MFAKCGGINLALNIFNEM-------------------------------PQKNVITWTSM 375

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR-VTIIG 399
           I   + +G    AL LF  M    +  ++ +  +++ AC +   +  G  +F+  V   G
Sbjct: 376 ITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYG 435

Query: 400 LDSDQIISTSLVDFY--CKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
           ++        +VD     K   +A+ L   M    ++P +  + ++L+AC   G +K G 
Sbjct: 436 IEPKHEHYGCMVDLLGRAKLMQEAVNLIESMH---LRPNVPVWGSLLAACWMHGDLKLGA 492

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVD-LFARAGCLNEAVNLIEQMPFEA 503
             F A K    +DP  +  S ++  ++ ++  LN+A  + + M  + 
Sbjct: 493 --FAAKKI-LQLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQG 536



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    S+   K +H  F+K   LN  L I N L+ M+ +CG    AL +F+EMP++
Sbjct: 309 VISACANLGSLDKAKWIHA-FIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQK 367

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           N  +W +MI  F   G  + +L LF  M
Sbjct: 368 NVITWTSMITAFAMHGDGKSALCLFEQM 395


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 174/610 (28%), Positives = 285/610 (46%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+ +C+   ++  G+QLH +  K G  ++   I   LL +Y +C +   AL  F E 
Sbjct: 392 LASLVVACSADGTLFRGQQLHAYTTKLGFASNN-KIEGALLNLYAKCADIETALDYFLET 450

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              N   WN M+  +  L     S ++F  M  +    N +++  ++    +  L  LE 
Sbjct: 451 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR--LGDLEL 508

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIHS I+      ++                               +  S LI  YA 
Sbjct: 509 GEQIHSQIIKTNFQLNA-------------------------------YVCSVLIDMYAK 537

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            GK++ A  +  R      V W +MI+GY   N D +AL  F +M   G+  D   L + 
Sbjct: 538 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 597

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +SAC+ L  L+ G+Q+H  AC  G   D               +P               
Sbjct: 598 VSACAGLQALKEGQQIHAQACVSGFSSD---------------LP--------------- 627

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
              N ++T+YS CG+IE++   F        I+WN+++ G  Q+G+  EAL +F  MN+ 
Sbjct: 628 -FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            +  + F+  S + A +  ++++ G+QV A +T  G DS+  +  +L+  Y KCG     
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL  F++M ++ V+P  +T   +LSAC H 
Sbjct: 747 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 806

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV +G  +F++M  +Y + P+ EHY C+VD+  RAG L+ A   I++MP + D  +W +
Sbjct: 807 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 866

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  CV H +  +G   A  ++EL+PE++  Y+ LS+++A S +W+   L R  M+EK V
Sbjct: 867 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGV 926

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 927 KKEPGQSWIE 936



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 152/588 (25%), Positives = 253/588 (43%), Gaps = 120/588 (20%)

Query: 8   LARLLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  LL+ C  T+ S+  G++LH   LK G L+S   ++ +L   Y+  G+   A  +FDE
Sbjct: 87  LKWLLEGCLKTNGSLDEGRKLHSQILKLG-LDSNGCLSEKLFDFYLFKGDLYGAFKVFDE 145

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAA 120
           MP R  F+WN MI+         +   LF      NV P +  FS    +    +    A
Sbjct: 146 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG---VLEACRGGSVA 202

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
            +  +QIH+ IL  GL   +V+ + L++LY + G  + A +V + +              
Sbjct: 203 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL-------------- 248

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
                          R  D SS  W +MISG   N  + EA+ LF  M   G++      
Sbjct: 249 ---------------RLKDHSS--WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAF 291

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SVLSAC  +  LE G+Q+HG   K+G   D  V +AL+  Y   G    A  +FS +  
Sbjct: 292 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ 351

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            D +  NT+I   S CG  E                               +A++LF  M
Sbjct: 352 RDAVTYNTLINGLSQCGYGE-------------------------------KAMELFKRM 380

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
           +   L  D  +LAS++ AC+   +L  G+Q+ A  T +G  S+  I  +L++ Y KC   
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 440

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           ++  +F +M+   + P   T+ +IL  C
Sbjct: 441 ETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 500

Query: 448 DHCGLVKEGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
              G ++ G++     +K  + ++  +   S ++D++A+ G L+ A +++ +   + DV 
Sbjct: 501 IRLGDLELGEQIHSQIIKTNFQLNAYV--CSVLIDMYAKLGKLDTAWDILIRFAGK-DVV 557

Query: 507 MWSSILRGCVAHG--DKGLG--RKVAERMIELD------PENACAYIQ 544
            W++++ G   +   DK L   R++ +R I  D        +ACA +Q
Sbjct: 558 SWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 605



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 133/548 (24%), Positives = 240/548 (43%), Gaps = 108/548 (19%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           V +Q+H   L +G+ +ST+ + N L+ +Y R G    A  +FD +  ++  SW AMI G 
Sbjct: 205 VVEQIHARILYQGLRDSTV-VCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGL 263

Query: 83  MKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
            K   + ++++LF       +MP    FS   ++S   K  + +LE G+Q+H  +L  G 
Sbjct: 264 SKNECEAEAIRLFCDMYVLGIMPTPYAFS--SVLSACKK--IESLEIGEQLHGLVLKLGF 319

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
             D+ + ++LV+LY                     F L  LIS          A  +F  
Sbjct: 320 SSDTYVCNALVSLY---------------------FHLGNLIS----------AEHIFSN 348

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
            +   +V +N++I+G        +A+ LF +M  +G+  D++TLAS++ ACS+ G L  G
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           +Q+H +  K+G   +  +  ALL+ Y+K      A   F E +V + +L N M+  Y   
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY--- 465

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G ++D ++ FR                            +F  M   ++  ++++  S++
Sbjct: 466 GLLDDLRNSFR----------------------------IFRQMQIEEIVPNQYTYPSIL 497

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
             C  +  LELGEQ+ +++       +  + + L+D Y K G                  
Sbjct: 498 KTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVV 557

Query: 419 -------------YD--ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                        +D  AL  F +M + G++   +  T  +SAC     +KEGQ+   A 
Sbjct: 558 SWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQ 616

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
                   ++   + +V L++R G + E+    EQ     ++  W++++ G    G+   
Sbjct: 617 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA-WNALVSGFQQSGNNEE 675

Query: 524 GRKVAERM 531
             +V  RM
Sbjct: 676 ALRVFVRM 683


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 190/608 (31%), Positives = 296/608 (48%), Gaps = 80/608 (13%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+SC     + +G QLH H LK       + +    L MY +C N  DA +LFD+  
Sbjct: 243 ASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDKSE 301

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQ 126
             N  S+NAMI G+ +  H  K+L LF+ +         + +SG   A A +  L  G Q
Sbjct: 302 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 361

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           I+   + + L  D  + ++ +++YGK                               C  
Sbjct: 362 IYDLAIKSSLSLDVCVANAAIDMYGK-------------------------------CQA 390

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +A RVFD      +V WN++I+ +  N +  E L LF  M R+ +  D  T  SVL A
Sbjct: 391 LAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKA 450

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+  G L +G ++H    K G+  +  V  +L+D YSK GM  +A K+ S          
Sbjct: 451 CTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRF------FQ 503

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
            T ++     G +E+ + +      +  +SWNS+I G        +A  LF  M ++ + 
Sbjct: 504 RTNVS-----GTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGIT 558

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            DKF+ A+V+  CAN++S  LG+Q+ A+V    L SD  IS++LVD Y KCG        
Sbjct: 559 PDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLM 618

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +A+ LF  M    +KP  +TF +IL AC H GL+
Sbjct: 619 FEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLI 678

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G ++F  MK  Y +DP++ HYS MVD+  ++G +  A+ LI +MPFEAD  +W ++L 
Sbjct: 679 DKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 738

Query: 514 GCVAHGDK-GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            C  H +   +  +    ++ LDP+++ AY  LS+++A +G WEK S +R  MR   + K
Sbjct: 739 VCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKK 798

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 799 EPGCSWVE 806



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 217/494 (43%), Gaps = 91/494 (18%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C    ++ +GKQ H H +  G   +T  + N LLQ+Y    +   A ++FD MP R+  S
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTF-VLNCLLQVYTNSRDFVSASMVFDRMPLRDVVS 74

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS-HILV 133
           WN MI G+ K  +  K+   FN+MP ++  SWN ++SG+       L+ G+ + S  + V
Sbjct: 75  WNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGY-------LQNGETLKSIEVFV 127

Query: 134 N----GLDFDSVLGSSLVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALISGYANCG 185
           +    G +FD    + ++ +     D +   Q    V+ +  + D    SAL+  YA   
Sbjct: 128 DMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGK 187

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           +  ++ RVF    + +SV W+++I+G + NN  + AL  F +M++       S  ASVL 
Sbjct: 188 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 247

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           +C++L  L  G Q+H HA K     D IV +A LD Y+K                     
Sbjct: 248 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK--------------------- 286

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     C  ++DA+ +F    N +  S+N+MI G SQ     +AL LF  +    L
Sbjct: 287 ----------CDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 336

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------- 417
             D+ SL+ V  ACA +  L  G Q++       L  D  ++ + +D Y KC        
Sbjct: 337 GFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFR 396

Query: 418 -------------------------GYDALALFNEMRNTGVKPTIITFTAILSACD---- 448
                                    GY+ L LF  M  + ++P   TF ++L AC     
Sbjct: 397 VFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSL 456

Query: 449 ------HCGLVKEG 456
                 H  +VK G
Sbjct: 457 GYGMEIHSSIVKSG 470



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 199/443 (44%), Gaps = 71/443 (16%)

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           A   ALE GKQ H+H++++G    + + + L+ +Y    DF SA+ V + M   D    +
Sbjct: 17  AKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWN 76

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
            +I+GYA    M  A   F+       V WNSM+SGY+ N E  +++ +F  M R G   
Sbjct: 77  KMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEF 136

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  T A +L  CS L     G Q+HG   +VG   DV+ ASALLD Y+K           
Sbjct: 137 DGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAK----------- 185

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                                 R  ++  +F+ +P K+ +SW+++I G  QN     AL 
Sbjct: 186 --------------------GKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALK 225

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
            F  M K++  + +   ASV+ +CA +S L LG Q+ A        +D I+ T+ +D Y 
Sbjct: 226 FFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYA 285

Query: 416 KC---------------------------------GYDALALFNEMRNTGVKPTIITFTA 442
           KC                                 G+ AL LF+ + ++G+    I+ + 
Sbjct: 286 KCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSG 345

Query: 443 ILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           +  AC     + EG + +D A+K    +D  + + +  +D++ +   L EA  + ++M  
Sbjct: 346 VFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAA--IDMYGKCQALAEAFRVFDEMR- 402

Query: 502 EADVGMWSSILRGCVAHGDKGLG 524
             D   W++I+    AH   G G
Sbjct: 403 RRDAVSWNAII---AAHEQNGKG 422



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 130/579 (22%), Positives = 245/579 (42%), Gaps = 119/579 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L+ C+      +G Q+H   ++ G  ++ +  A+ LL MY +     ++L +F  +
Sbjct: 141 FAIILKVCSCLEDTSLGMQIHGVVVRVGC-DTDVVAASALLDMYAKGKRFVESLRVFQGI 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
           P +N  SW+A+I G ++      +L+ F  M + N      + +   +  A L+ L  G 
Sbjct: 200 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGG 259

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H+H L +    D ++ ++ +++Y K                               C 
Sbjct: 260 QLHAHALKSDFAADGIVRTATLDMYAK-------------------------------CD 288

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            M DA+ +FD++ + +   +N+MI+GY       +ALLLFH++  +G+  D  +L+ V  
Sbjct: 289 NMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFR 348

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ +  L  G Q++  A K  +  DV VA+A +D Y K    ++A ++F E++  D   
Sbjct: 349 ACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDA-- 406

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                        +SWN++I    QNG   E L LF +M +  +
Sbjct: 407 -----------------------------VSWNAIIAAHEQNGKGYETLFLFVSMLRSRI 437

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             D+F+  SV+ AC    SL  G ++ + +   G+ S+  +  SL+D Y KCG       
Sbjct: 438 EPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 496

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM---- 463
                         +    +M N  ++   +++ +I+S        ++ Q  F  M    
Sbjct: 497 IHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMG 556

Query: 464 ----KWQY--------------------------HIDPEIEHYSCMVDLFARAGCLNEAV 493
               K+ Y                           +  ++   S +VD++++ G L+++ 
Sbjct: 557 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSR 616

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
            + E+     D   W++++ G   HG      ++ ERMI
Sbjct: 617 LMFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMI 654



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 6/220 (2%)

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+  G LE GKQ H H    G      V + LL  Y+       A  +F  + + D +  
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N MI  Y+    +  A   F  MP + ++SWNSM+ G  QNG  ++++++F +M +    
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALAL 424
            D  + A ++  C+ +    LG Q+   V  +G D+D + +++L+D Y K     ++L +
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
           F  +     +   ++++AI++ C    L+    K+F  M+
Sbjct: 196 FQGIP----EKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 190/607 (31%), Positives = 283/607 (46%), Gaps = 100/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C   H + +G Q H   +KK  L   L + N L+ MY +CG   DA  +F+ M  R
Sbjct: 434 LLSTCAVSHDLEMGSQFHSIIIKKK-LTKNLFVGNALVDMYAKCGALEDARQIFEHMCDR 492

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           +  SWN +I G+++  ++ ++  LF  M      S    ++   KA  ++  L  GKQ+H
Sbjct: 493 DNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVH 552

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
              +  GLD     GSSL+++Y KCG    A +V + M E     ++ALI+GY       
Sbjct: 553 CLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGY------- 605

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                                    S N   EA++LF +M   GV     T A+++ AC 
Sbjct: 606 -------------------------SQNNLEEAVVLFQEMLTKGVNPSEITFATIVEACH 640

Query: 249 SLGFLEHGKQVHGHACKVGVIDD-VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
               L  G Q HG   K G   +   +  +LL  Y      ++AC LFSEL    +I+L 
Sbjct: 641 KPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVL- 699

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                                        W  M+ G SQNG   EAL  +  M       
Sbjct: 700 -----------------------------WTGMMSGHSQNGFYEEALKFYKEMRHDGALP 730

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
           D+ +  +V+  C+ +SSL  G  + + +  +  D D++ S +L+D Y KCG         
Sbjct: 731 DQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVF 790

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     DAL +F+ MR + + P  ITF  +L+AC H G V
Sbjct: 791 DEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKV 850

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G+K F+ M  QY I+  ++H +CMVDL  R G L EA + IE    + D  +WSS+L 
Sbjct: 851 SDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLG 910

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  HGD   G   AER+IEL+P+N+ AY+ LS+I+A+ G WE+++ +R  MR++ V K+
Sbjct: 911 ACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANALRKAMRDRGVKKV 970

Query: 574 PGCSWAD 580
           PG SW D
Sbjct: 971 PGYSWID 977



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 145/583 (24%), Positives = 242/583 (41%), Gaps = 111/583 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +     ++  G+Q+H   +K G+  ++      L+ MY +C    DA  +FD +   
Sbjct: 166 VLSTSARETNVEFGRQIHCSMIKMGLERNSY-CGGALVDMYAKCDRLGDAQRVFDGIVDP 224

Query: 71  NCFSWNAMIEGFMKLGHKEKSL-----------------------------------QLF 95
           N   W  +  G++K G  E+++                                    LF
Sbjct: 225 NTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLF 284

Query: 96  NVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
             MP  +  +WN++ISG  K   ++ A+EY   +    + +     S LGS L  + G  
Sbjct: 285 GEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKST---RSTLGSVLSAI-GIV 340

Query: 154 GDFNSA----NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
            + +       + + +    + +  S+L+S Y+ C KM  A +VF+   + + V+WN+MI
Sbjct: 341 ANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMI 400

Query: 210 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
            GY  N E  + + LF  M+ +G   D  T  S+LS C+    LE G Q H    K  + 
Sbjct: 401 RGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLT 460

Query: 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
            ++ V +AL+D Y+K G   DA ++F                                 M
Sbjct: 461 KNLFVGNALVDMYAKCGALEDARQIFEH-------------------------------M 489

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
            ++  +SWN++I G  Q+ +  EA DLF  MN   +  D   LAS + AC N+  L  G+
Sbjct: 490 CDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGK 549

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------------ 419
           QV       GLD      +SL+D Y KCG                               
Sbjct: 550 QVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNN 609

Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHY 476
             +A+ LF EM   GV P+ ITF  I+ AC     +  G ++    +KW +  + E    
Sbjct: 610 LEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGI 669

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           S ++ L+  +  + EA  L  ++     + +W+ ++ G   +G
Sbjct: 670 S-LLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNG 711



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/564 (21%), Positives = 237/564 (42%), Gaps = 116/564 (20%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ +GK +H   L  GI +S   + N ++ +Y +C   + A   F+ +  ++  +WN+M+
Sbjct: 75  ALRIGKAVHSKSLILGI-DSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSML 132

Query: 80  EGFMKLGHKEKSLQ----LFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
             +  +G   K L+    LF  +   N F++++++S  A+     +E+G+QIH  ++  G
Sbjct: 133 SMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARE--TNVEFGRQIHCSMIKMG 190

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
           L                               E + +C  AL+  YA C ++ DA+RVFD
Sbjct: 191 L-------------------------------ERNSYCGGALVDMYAKCDRLGDAQRVFD 219

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
              D ++V W  + SGY+      EA+++F +MR  G   D     +V++   SLG L+ 
Sbjct: 220 GIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKD 279

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---------------- 299
            + + G         DV+  + ++  + KRG    A + F  ++                
Sbjct: 280 ARLLFGEMPS----PDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLS 335

Query: 300 -----------------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
                                    +  + ++++++YS C ++E A  +F  +  ++ + 
Sbjct: 336 AIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVL 395

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           WN+MI G + NG   + ++LF +M      +D F+  S++S CA    LE+G Q  + + 
Sbjct: 396 WNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIII 455

Query: 397 IIGLDSDQIISTSLVDFYCKCGY---------------------------------DALA 423
              L  +  +  +LVD Y KCG                                  +A  
Sbjct: 456 KKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFD 515

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
           LF  M + G+        + L AC +   + +G K    +  +  +D  +   S ++D++
Sbjct: 516 LFMRMNSCGIVSDGACLASTLKACTNVHGLYQG-KQVHCLSVKCGLDRVLHTGSSLIDMY 574

Query: 484 ARAGCLNEAVNLIEQMPFEADVGM 507
           ++ G + +A  +   MP  + V M
Sbjct: 575 SKCGIIEDARKVFSSMPEWSVVSM 598



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 130/532 (24%), Positives = 229/532 (43%), Gaps = 125/532 (23%)

Query: 90  KSLQLFNVMPQKNDFSWNMLISGFAKADLA-ALEYGKQIHSHILVNGLDFDSVLGSSLVN 148
           KS ++F+ MP +                LA AL  GK +HS  L+ G+D +  LG+++V+
Sbjct: 60  KSRKVFDEMPHR----------------LALALRIGKAVHSKSLILGIDSEGRLGNAIVD 103

Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
           LY KC   + A +  N +++                          D T       WNSM
Sbjct: 104 LYAKCAQVSYAEKQFNSLEK--------------------------DVTA------WNSM 131

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           +S Y S  +  + L  F  +  N +  +  T + VLS  +    +E G+Q+H    K+G+
Sbjct: 132 LSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGL 191

Query: 269 IDDVIVASALLDTYS-------------------------------KRGMPSDACKLFSE 297
             +     AL+D Y+                               K G+P +A  +F  
Sbjct: 192 ERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFER 251

Query: 298 LK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           ++      D +   T+I  Y S G+++DA+ +F  MP+  +++WN MI G  + G  I A
Sbjct: 252 MRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVA 311

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           ++ F NM K  ++  + +L SV+SA   +++L+LG  V A    +GL S+  + +SLV  
Sbjct: 312 IEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSM 371

Query: 414 YCKC--------------------------GY-------DALALFNEMRNTGVKPTIITF 440
           Y KC                          GY         + LF +M+++G      TF
Sbjct: 372 YSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTF 431

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           T++LS C     ++ G + F ++  +  +   +   + +VD++A+ G L +A  + E M 
Sbjct: 432 TSLLSTCAVSHDLEMGSQ-FHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMC 490

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
              +V  W++I+ G V   ++     +  RM      N+C  +   +  A++
Sbjct: 491 DRDNVS-WNTIIGGYVQDENESEAFDLFMRM------NSCGIVSDGACLAST 535



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 122/501 (24%), Positives = 219/501 (43%), Gaps = 79/501 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L++C   H ++ GKQ+H   +K G L+  L   + L+ MY +CG   DA  +F  M
Sbjct: 532 LASTLKACTNVHGLYQGKQVHCLSVKCG-LDRVLHTGSSLIDMYSKCGIIEDARKVFSSM 590

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P  +  S NA+I G+ +  + E+++ LF  M  K    ++ ++  ++    K +  +L  
Sbjct: 591 PEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPE--SLTL 647

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q H  I+  G                    F+S  + L +          +L+  Y N
Sbjct: 648 GTQFHGQIIKWG--------------------FSSEGEYLGI----------SLLGLYMN 677

Query: 184 CGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             +M +A  +F   +   S V+W  M+SG+  N    EAL  + +MR +G L D +T  +
Sbjct: 678 SRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVT 737

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL  CS L  L  G+ +H     +    D + ++ L+D Y+K G    + ++F E++   
Sbjct: 738 VLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRS 797

Query: 303 TIL-LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
            ++  N++I  Y+  G  EDA  IF +M    ++                          
Sbjct: 798 NVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMP------------------------- 832

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFA-RVTIIGLDSDQIISTSLVDFYCKCGYD 420
                 D+ +   V++AC++   +  G ++F   +   G+++       +VD   + GY 
Sbjct: 833 ------DEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYL 886

Query: 421 ALA-LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSC 478
             A  F E +N  +KP    ++++L AC   G    G+    A +    ++P+    Y  
Sbjct: 887 QEADDFIEAQN--LKPDARLWSSLLGACRIHGDDMRGEI---AAERLIELEPQNSSAYVL 941

Query: 479 MVDLFARAGCLNEAVNLIEQM 499
           + +++A  G   EA  L + M
Sbjct: 942 LSNIYASQGRWEEANALRKAM 962


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 194/673 (28%), Positives = 322/673 (47%), Gaps = 140/673 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+    + VG ++H   +K G   S   +   LL MY       DA   FD MP R
Sbjct: 106 VLKACSGFGDLSVGGKVHGRVIKCG-FESDAVVETSLLCMYGEMSCLDDACKAFDTMPIR 164

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADLAALEYGKQIH 128
           +  +W++++  F++ G   + L +F+ M  +     S  ML    A ++L +L  G+ +H
Sbjct: 165 DVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVH 224

Query: 129 SHILVNGLDFDSVLGSSL-------------------------------VNLYGKCGDFN 157
            +++   ++ ++ L +SL                               ++ Y + G F 
Sbjct: 225 GYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQ 284

Query: 158 SANQVLNMMKE---------------------------------------PD-DFCLSAL 177
            A  V   M+E                                       P+ DF   AL
Sbjct: 285 EALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPAL 344

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           +  YA+ G + D  +VF+   + + + WN++IS +  N +  EALLLF +M+  G++ D+
Sbjct: 345 MELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDS 404

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            +LAS LSAC ++ F + G Q+HG+  K G  +D  V +AL+D Y+K             
Sbjct: 405 YSLASSLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAK------------- 450

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                             CG +  A  +F  +  KSL++WNSMI G SQNG  +EA+ LF
Sbjct: 451 ------------------CGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLF 492

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M    ++MDK +  SVI AC+++  LE G+ V  ++ + GL  D  + T+L D Y KC
Sbjct: 493 DQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKC 552

Query: 418 G--------YD-------------------------ALALFNEMRNTGVKPTIITFTAIL 444
           G        +D                          ++LFN+M  +G+KP  ITF  IL
Sbjct: 553 GELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHIL 612

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           SAC H G V+EG+ +F++M  ++ ++P+ +H++CMVDL +RAG LN A  +I  +PF A+
Sbjct: 613 SACSHAGAVEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPAN 671

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
             +W ++L GC  H    + + + + ++++D  +   Y  LS+I+A  G W+K   +R +
Sbjct: 672 SSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSM 731

Query: 565 MREKHVGKLPGCS 577
           M+ K + K+PG S
Sbjct: 732 MKSKGLRKVPGYS 744



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 138/648 (21%), Positives = 260/648 (40%), Gaps = 151/648 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L + C T  ++    QLH H    G L+   P + +L++ Y + G    +  +FD  P+ 
Sbjct: 7   LFRRCATSTTL---TQLHAHLFITG-LHRHPPASTKLIESYAQIGIFESSKRVFDTFPKP 62

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW-NMLISGFAKA--DLAALEYGKQI 127
           + F W  +I+ ++  G  E+++ L++ M  ++     N +     KA      L  G ++
Sbjct: 63  DSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKV 122

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H  ++  G + D+V+ +SL+ +YG+                    CL             
Sbjct: 123 HGRVIKCGFESDAVVETSLLCMYGEMS------------------CL------------- 151

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           +DA + FD       V W+S++  ++ N + +E L +F +M    V  D+ T+ SV  AC
Sbjct: 152 DDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEAC 211

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           S LG L  G+ VHG+                     +R + S+A             L N
Sbjct: 212 SELGSLRLGRSVHGYVV-------------------RREIESNAS------------LNN 240

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           ++I +Y   G +  A+ +F  +P +    W  MI   +Q+G   EAL++F  M +  +  
Sbjct: 241 SLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEP 300

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSD-QIISTSLVDFYCKCG-------- 418
           ++ ++  V+ ACA +  ++ G  V   V    +D +   +  +L++ Y   G        
Sbjct: 301 NQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKV 360

Query: 419 -------------------------YDALALFNEMRNTGVKPT------------IITFT 441
                                     +AL LF +M+  G+ P              I+F+
Sbjct: 361 FETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFS 420

Query: 442 ----------------------AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
                                 A++     CG V    K F+ +K     +  +  ++ M
Sbjct: 421 QLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIK-----EKSLVTWNSM 475

Query: 480 VDLFARAGCLNEAVNLIEQMPF---EADVGMWSSILRGCVAHGDKGLGRKVAERMIELD- 535
           +  F++ G   EA+ L +QM     + D   + S+++ C   G    G+ V  ++I    
Sbjct: 476 ICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGL 535

Query: 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIA 583
            +++     L+ +++  GE + +  + D M E+ +      SW+  IA
Sbjct: 536 RKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSI-----VSWSVMIA 578


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 174/610 (28%), Positives = 285/610 (46%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+ +C+   ++  G+QLH +  K G  ++   I   LL +Y +C +   AL  F E 
Sbjct: 352 LASLVVACSADGTLFRGQQLHAYTTKLGFASNN-KIEGALLNLYAKCADIETALDYFLET 410

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              N   WN M+  +  L     S ++F  M  +    N +++  ++    +  L  LE 
Sbjct: 411 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR--LGDLEL 468

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIHS I+      ++                               +  S LI  YA 
Sbjct: 469 GEQIHSQIIKTNFQLNA-------------------------------YVCSVLIDMYAK 497

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            GK++ A  +  R      V W +MI+GY   N D +AL  F +M   G+  D   L + 
Sbjct: 498 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 557

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +SAC+ L  L+ G+Q+H  AC  G   D               +P               
Sbjct: 558 VSACAGLQALKEGQQIHAQACVSGFSSD---------------LP--------------- 587

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
              N ++T+YS CG+IE++   F        I+WN+++ G  Q+G+  EAL +F  MN+ 
Sbjct: 588 -FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 646

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            +  + F+  S + A +  ++++ G+QV A +T  G DS+  +  +L+  Y KCG     
Sbjct: 647 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 706

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL  F++M ++ V+P  +T   +LSAC H 
Sbjct: 707 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 766

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV +G  +F++M  +Y + P+ EHY C+VD+  RAG L+ A   I++MP + D  +W +
Sbjct: 767 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 826

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  CV H +  +G   A  ++EL+PE++  Y+ LS+++A S +W+   L R  M+EK V
Sbjct: 827 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGV 886

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 887 KKEPGQSWIE 896



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 156/590 (26%), Positives = 254/590 (43%), Gaps = 124/590 (21%)

Query: 8   LARLLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  LL+ C  T+ S+  G++LH   LK G L+S   ++ +L   Y+  G+   A  +FDE
Sbjct: 47  LKWLLEGCLKTNGSLDEGRKLHSQILKLG-LDSNGCLSEKLFDFYLFKGDLYGAFKVFDE 105

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAA 120
           MP R  F+WN MI+         +   LF      NV P +  FS    +    +    A
Sbjct: 106 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG---VLEACRGGSVA 162

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
            +  +QIH+ IL  GL   +V+ + L++LY + G  + A                     
Sbjct: 163 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLA--------------------- 201

Query: 181 YANCGKMNDARRVFD--RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                     RRVFD  R  D SS  W +MISG   N  + EA+ LF  M   G++    
Sbjct: 202 ----------RRVFDGLRLKDHSS--WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPY 249

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
             +SVLSAC  +  LE G+Q+HG   K+G   D  V +AL+  Y   G    A  +FS +
Sbjct: 250 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 309

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              D +  NT+I   S CG  E                               +A++LF 
Sbjct: 310 SQRDAVTYNTLINGLSQCGYGE-------------------------------KAMELFK 338

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M+   L  D  +LAS++ AC+   +L  G+Q+ A  T +G  S+  I  +L++ Y KC 
Sbjct: 339 RMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCA 398

Query: 419 ---------------------------------YDALALFNEMRNTGVKPTIITFTAILS 445
                                             ++  +F +M+   + P   T+ +IL 
Sbjct: 399 DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 458

Query: 446 ACDHCGLVKEGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
            C   G ++ G++     +K  + ++  +   S ++D++A+ G L+ A +++ +   + D
Sbjct: 459 TCIRLGDLELGEQIHSQIIKTNFQLNAYV--CSVLIDMYAKLGKLDTAWDILIRFAGK-D 515

Query: 505 VGMWSSILRGCVAHG--DKGLG--RKVAERMIELD------PENACAYIQ 544
           V  W++++ G   +   DK L   R++ +R I  D        +ACA +Q
Sbjct: 516 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 565



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 133/548 (24%), Positives = 240/548 (43%), Gaps = 108/548 (19%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           V +Q+H   L +G+ +ST+ + N L+ +Y R G    A  +FD +  ++  SW AMI G 
Sbjct: 165 VVEQIHARILYQGLRDSTV-VCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGL 223

Query: 83  MKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
            K   + ++++LF       +MP    FS   ++S   K  + +LE G+Q+H  +L  G 
Sbjct: 224 SKNECEAEAIRLFCDMYVLGIMPTPYAFS--SVLSACKK--IESLEIGEQLHGLVLKLGF 279

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
             D+ + ++LV+LY                     F L  LIS          A  +F  
Sbjct: 280 SSDTYVCNALVSLY---------------------FHLGNLIS----------AEHIFSN 308

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
            +   +V +N++I+G        +A+ LF +M  +G+  D++TLAS++ ACS+ G L  G
Sbjct: 309 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 368

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           +Q+H +  K+G   +  +  ALL+ Y+K      A   F E +V + +L N M+  Y   
Sbjct: 369 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY--- 425

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G ++D ++ FR                            +F  M   ++  ++++  S++
Sbjct: 426 GLLDDLRNSFR----------------------------IFRQMQIEEIVPNQYTYPSIL 457

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
             C  +  LELGEQ+ +++       +  + + L+D Y K G                  
Sbjct: 458 KTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVV 517

Query: 419 -------------YD--ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                        +D  AL  F +M + G++   +  T  +SAC     +KEGQ+   A 
Sbjct: 518 SWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQ 576

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
                   ++   + +V L++R G + E+    EQ     ++  W++++ G    G+   
Sbjct: 577 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA-WNALVSGFQQSGNNEE 635

Query: 524 GRKVAERM 531
             +V  RM
Sbjct: 636 ALRVFVRM 643


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 200/678 (29%), Positives = 310/678 (45%), Gaps = 138/678 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++++C     ++   Q+H   +K G +     +   L+  Y +     DA LLFD +
Sbjct: 144 LASVVRACTQFGGLNPALQIHGLVVKGGYVQDVY-VCTSLIDFYTKHACIDDARLLFDGL 202

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             +  F+W  +I G+ K G  + SL+LF+ M + +      ++S    A   L  LE GK
Sbjct: 203 QVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGK 262

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH ++L +G+    V+  S+VN                             I  Y  C 
Sbjct: 263 QIHCYVLRSGI----VMDVSMVN---------------------------GFIDFYFKCH 291

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           K+   R++FDR  D + V W ++I+G + N+   +AL LF +M R G   DA    SVL+
Sbjct: 292 KVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLN 351

Query: 246 ACSSLGFLEHGKQVHGHACKV----------GVID---------------------DVIV 274
           +C SL  LE G+QVH +A KV          G+ID                     D++ 
Sbjct: 352 SCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVS 411

Query: 275 ASALLDTYSKRGMPSDACKLFSELKV---------------------------------- 300
            +A+++ YS++    +A  LF E+++                                  
Sbjct: 412 YNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLII 471

Query: 301 -----YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                 D    + +I VYS C R+ DA+ +F  + +K ++ W +M  G +Q     E+L 
Sbjct: 472 KYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLK 531

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           L+  +    L+ ++F+ A+VI+A +NI+SL  G+Q   +V  +G D D  ++ +LVD Y 
Sbjct: 532 LYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYA 591

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           K G                                   AL +F +M   G+KP  +TF  
Sbjct: 592 KSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVG 651

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H GL+  G   FD+M  Q+ I+P IEHY CMV L  RAG L EA   IE+MP +
Sbjct: 652 VLSACSHTGLLDLGFDHFDSMS-QFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIK 710

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W S+L  C   G+  LG   AE  I  +P ++ +Y+ LS+IFA+ G W     +R
Sbjct: 711 QAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLR 770

Query: 563 DIMREKHVGKLPGCSWAD 580
           + M    V K PGCSW +
Sbjct: 771 EKMDISGVVKEPGCSWIE 788



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 138/570 (24%), Positives = 242/570 (42%), Gaps = 112/570 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LLQS +    I   K++H   +  G     + + N LL  Y +      A  LFD M
Sbjct: 45  LANLLQSPH----IPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTM 100

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKA--DLAALEYG 124
             +N  +W++M+  +    H  ++L LF   M   N+     +++   +A      L   
Sbjct: 101 SHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPA 160

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
            QIH  ++  G   D  + +SL++ Y K                    C+          
Sbjct: 161 LQIHGLVVKGGYVQDVYVCTSLIDFYTKHA------------------CI---------- 192

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
              +DAR +FD     +S  W ++I+GY        +L LF +M+   V  D   L+SVL
Sbjct: 193 ---DDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVL 249

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SAC  L FLE GKQ+H +  + G++ DV + +  +D Y K                    
Sbjct: 250 SACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFK-------------------- 289

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      C +++  + +F  M +K+++SW ++I G  QN    +ALDLF  M ++ 
Sbjct: 290 -----------CHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMG 338

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------- 417
              D F   SV+++C ++ +LE G QV A    + +D+D  +   L+D Y KC       
Sbjct: 339 WNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDAR 398

Query: 418 -------------------GY-------DALALFNEMRNTGVKPTIITFTAIL---SACD 448
                              GY       +AL LF EMR +   PT++ F ++L   ++  
Sbjct: 399 KVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLY 458

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H  L  +       +  +Y +  +    S ++D++++   + +A  + E++  + D+ +W
Sbjct: 459 HLELSNQ----IHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQ-DKDIVVW 513

Query: 509 SSILRGCVAHGDKGLGRKVAE--RMIELDP 536
           +++  G     +     K+ +  +M  L P
Sbjct: 514 TAMFSGYTQQSENEESLKLYKCLQMSRLKP 543



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 150/352 (42%), Gaps = 71/352 (20%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + +++ L  S + +H + +  Q+H   +K G+        + L+ +Y +C    DA L
Sbjct: 443 TLLIFVSLLGVSASLYH-LELSNQIHGLIIKYGVSLDEFA-GSALIDVYSKCSRVGDARL 500

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADL 118
           +F+E+  ++   W AM  G+ +    E+SL+L+  +     + N+F++  +I+  A +++
Sbjct: 501 VFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVIT--AASNI 558

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           A+L +G+Q H+ ++  G D D  + ++LV++Y K G    A++        D  C +++I
Sbjct: 559 ASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMI 618

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           + YA  G                               E  +AL +F  M   G+  +  
Sbjct: 619 ATYAQHG-------------------------------EAEKALQVFEDMIMEGLKPNYV 647

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T   VLSACS  G L+ G        + G+               + G+    C      
Sbjct: 648 TFVGVLSACSHTGLLDLGFDHFDSMSQFGI---------------EPGIEHYVC------ 686

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGS 349
                     M+++    G++ +AK     MP K + + W S++     +G+
Sbjct: 687 ----------MVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGN 728


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 288/596 (48%), Gaps = 79/596 (13%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDEMPRRNCFSWNAMIEGFM 83
           K++H   L+ G+       +       +   +  D A  LFD++P+ N ++WN +I  + 
Sbjct: 42  KEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYA 101

Query: 84  KLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
                 +S  +F  +  K     N F++  +I   A ++L A   G  +H   +      
Sbjct: 102 SSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIK--AASELKASRVGTAVHGMAIKLSFGM 159

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D  + +SLV  YG                                CG ++ A R+F   +
Sbjct: 160 DLYILNSLVRFYGA-------------------------------CGDLSMAERLFKGIS 188

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
               V WNSMIS +   N   +AL LF KM R  V+ ++ T+  VLSAC+    LE G+ 
Sbjct: 189 CKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRW 248

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           V  +  + G+  D+ + +A+LD Y+K G   DA KLF E+   D      M+  Y+  G 
Sbjct: 249 VCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGD 308

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL----RMDKFSLAS 374
            + A+ +F  MP K + +WN +I    QNG P EAL +F   N+L L    + D+ +L S
Sbjct: 309 YDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIF---NELQLSKIAKPDEVTLVS 365

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------- 418
            +SACA + +++LG  +   +   G+  +  + +SLVD Y KCG                
Sbjct: 366 TLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERD 425

Query: 419 -----------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                              A+ LF EM+   VKP  +TFT +L AC H GLV EG+ +F 
Sbjct: 426 VYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFH 485

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
            M+  Y + PE++HY+CMVD+  RAG L EA+ LI +M       +W ++L  C  H + 
Sbjct: 486 EMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNV 545

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            LG   ++++++L+P N  A + LS+I+A +G WEK S +R +MR+  + K PGCS
Sbjct: 546 ELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCS 601



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 144/323 (44%), Gaps = 67/323 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     +  G+ +  +  +KGI    L + N +L MY +CG+  DA  LFDEMP R
Sbjct: 233 VLSACAKKLDLEFGRWVCSYIERKGI-KVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPER 291

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------------- 115
           + FSW  M++G+ K+G  + +  +FN MP K   +WN+LIS + +               
Sbjct: 292 DVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQ 351

Query: 116 -------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
                              A L A++ G  IH +I   G+  +  L SSLV++Y KCG  
Sbjct: 352 LSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSL 411

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
             A +V   ++E D +                               +W++MI+G   + 
Sbjct: 412 EKALEVFYSVEERDVY-------------------------------VWSAMIAGLGMHG 440

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVA 275
               A+ LF +M+   V  ++ T  +VL ACS  G ++ G+   H      GV+ ++   
Sbjct: 441 RGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHY 500

Query: 276 SALLDTYSKRGMPSDACKLFSEL 298
           + ++D   + G   +A +L +E+
Sbjct: 501 ACMVDILGRAGFLEEAMELINEM 523


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 169/576 (29%), Positives = 295/576 (51%), Gaps = 40/576 (6%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L+ M++RCG    A  LF ++ R   F  N+M+ G+ KL   + +++ F  M +++
Sbjct: 165 VETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERD 224

Query: 103 DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ- 161
             SWNM+I+  +++       G  +  H    G+  DS   +S +    +        Q 
Sbjct: 225 VVSWNMMIAALSQSGRVREALGLVVEMH--RKGVRLDSTTYTSSLTACARLFSLGWGKQL 282

Query: 162 ---VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
              V+  + + D +  SALI  YA CG   +A+RVF+   D +SV W  +I G +     
Sbjct: 283 HAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECF 342

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
           ++++ LF++MR   +  D   LA+++S C +   L  G+Q+H    K G    ++V+++L
Sbjct: 343 SKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSL 402

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +  Y+K G   +A  +FS +   D +   +MIT YS  G I  A+  F  M  ++ I+WN
Sbjct: 403 ISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWN 462

Query: 339 SMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           +M+    Q+G+  + L ++  M ++ D+  D  +  ++   CA+I + +LG+Q+      
Sbjct: 463 AMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVK 522

Query: 398 IGLDSDQIISTSLVDFYCKCGY---------------------------------DALAL 424
            GL  +  ++ + +  Y KCG                                   A   
Sbjct: 523 AGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKT 582

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F++M + G KP  I++ A+LS C H GLV+EG+ +FD M   + I P +EH+SCMVDL  
Sbjct: 583 FDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLG 642

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544
           RAG L EA +LI++MP +    +W ++L  C  HG+  L    A+ + ELD  ++ +Y+ 
Sbjct: 643 RAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYML 702

Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           L+ I++ +G+ + S+ +R +MR+K + K PG SW +
Sbjct: 703 LAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWME 738



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 143/537 (26%), Positives = 265/537 (49%), Gaps = 60/537 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL-LLFDE 66
           LA  L+SC +  ++   + LH   +  G L S + + N LL  Y+ CG  +DA  LL  +
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVG-LASAVFLQNTLLHAYLSCGALSDARRLLRAD 81

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG-- 124
           +   N  + N M+ G+ K G    + +LF+ MP+++  SWN L+S  ++   + +  G  
Sbjct: 82  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGAL 141

Query: 125 --KQIHSHILVNGL----DF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
             +++   +L  GL    DF  D  + ++LV+++ +CG  + A+++ + ++ P  FC ++
Sbjct: 142 GCRELAPQLL--GLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNS 199

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           +++GYA    ++ A   F+   +   V WN MI+    +    EAL L  +M R GV  D
Sbjct: 200 MLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLD 259

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           ++T  S L+AC+ L  L  GKQ+H    +     D  VASAL++ Y+K            
Sbjct: 260 STTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAK------------ 307

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                              CG  ++AK +F ++ +++ +SW  +I G  Q     ++++L
Sbjct: 308 -------------------CGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 348

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    + +D+F+LA++IS C N   L LG Q+ +     G +   ++S SL+  Y K
Sbjct: 349 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 408

Query: 417 CG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
           CG   +A  +F+ M     +  I+++T++++A    G + + +++FD M  +  I     
Sbjct: 409 CGDLQNAEFVFSSMS----ERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAIT---- 460

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVG----MWSSILRGCVAHGDKGLGRKV 527
            ++ M+  + + G   + + +   M  + DV      + ++ RGC   G   LG ++
Sbjct: 461 -WNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQI 516


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  288 bits (738), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 169/600 (28%), Positives = 298/600 (49%), Gaps = 78/600 (13%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N+ +  +MR G+   AL +F+ MPRR+  S+NAMI G+++      +  LF+ MP+++ F
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLF 112

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SWN++++G+ +     L   +++   +     + D V  +SL++ Y + G  + A +V +
Sbjct: 113 SWNVMLTGYVRN--CRLGDARRLFDLMP----EKDVVSWNSLLSGYAQNGYVDEAREVFD 166

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
            M E +    + L++ Y + G++ +A  +F+  +D   + WN ++ G++   +  +A  L
Sbjct: 167 NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
           F KM     + DA +  +++S  +  G L   +++   +       DV   +A++  Y +
Sbjct: 227 FDKM----PVRDAISWNTMISGYAQGGGLSQARRLFDES----PTRDVFTWTAMVSGYVQ 278

Query: 285 RGMPSDACKLFSELK-----VYDTIL--------------------------LNTMITVY 313
            GM  +A   F E+       Y+ ++                           NTMIT Y
Sbjct: 279 NGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGY 338

Query: 314 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
              G I  A+  F  MP +  +SW ++I G +Q+G   EAL++F  + +    +++ +  
Sbjct: 339 GQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFG 398

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------- 418
             +S CA+I++LELG+Q+  +   +G  +   +  +L+  Y KCG               
Sbjct: 399 CALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEK 458

Query: 419 ------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                               AL +F  M+  GVKP  IT   +LSAC H GL+  G ++F
Sbjct: 459 DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYF 518

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
            +M   Y + P  +HY+CM+DL  RAG L EA +LI  MPF+     W ++L     HG+
Sbjct: 519 YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN 578

Query: 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             LG K AE + +++P+N+  Y+ LS+++A SG W  +  +R  MR+  V K+PG SW +
Sbjct: 579 TELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVE 638



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 191/444 (43%), Gaps = 63/444 (14%)

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D D +  +  ++ + + G  +SA  V N M        +A+ISGY    K N AR +FD+
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             +     WN M++GY+ N    +A  LF  M      +D  +  S+LS  +  G+++  
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPE----KDVVSWNSLLSGYAQNGYVDEA 161

Query: 257 KQVHGHACKVGVID---------------------------DVIVASALLDTYSKRGMPS 289
           ++V  +  +   I                            D+I  + L+  + ++    
Sbjct: 162 REVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLG 221

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA  LF ++ V D I  NTMI+ Y+  G +  A+ +F   P + + +W +M+ G  QNG 
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281

Query: 350 PIEALDLFCNMNKLD-----------LRMDKFSLASVI---SACANISSL--------EL 387
             EA   F  M + +           ++  K  +A  +     C NISS         ++
Sbjct: 282 LDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQI 341

Query: 388 GEQVFARVTIIGLDSDQIIS-TSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAIL 444
           G+   AR     +     +S  +++  Y + G+  +AL +F E++  G      TF   L
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401

Query: 445 SACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           S C     ++ G++    A+K  Y     +   + ++ ++ + G ++EA +  E +  E 
Sbjct: 402 STCADIAALELGKQIHGQAVKMGYGTGCFVG--NALLAMYFKCGSIDEANDTFEGIE-EK 458

Query: 504 DVGMWSSILRGCVAHGDKGLGRKV 527
           DV  W+++L G   H   G GR+ 
Sbjct: 459 DVVSWNTMLAGYARH---GFGRQA 479



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   +K G       + N LL MY +CG+  +A   F+ +  ++
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCF-VGNALLAMYFKCGSIDEANDTFEGIEEKD 459

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQ-IH 128
             SWN M+ G+ + G   ++L +F  M         + + G   A      L+ G +  +
Sbjct: 460 VVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFY 519

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISG---YANC 184
           S     G+   S   + +++L G+ G    A  ++ NM  +P      AL+     + N 
Sbjct: 520 SMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNT 579

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                A  +  +    +S M+  + + Y ++    +A  +  KMR  GV
Sbjct: 580 ELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGV 628


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  288 bits (737), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 184/646 (28%), Positives = 301/646 (46%), Gaps = 104/646 (16%)

Query: 37  LNSTLPIANRLLQMYMRC----------GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LNS+    NR  +  + C          G+  +A  +F  MP +N  SW AM+  + + G
Sbjct: 96  LNSSNTQGNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENG 155

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLISGFAKAD----------LAALEYGKQIHSHILVNGL 136
           H  K+ ++F  MPQ+   S+N +I+ + +++           A +     I    ++ GL
Sbjct: 156 HIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGL 215

Query: 137 DF-------------------DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
                                D V  ++L++ Y K G    A ++   M E D    S++
Sbjct: 216 ARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSM 275

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-D 236
           + GY   GK+  AR +F+R  + + V W +MI G++          LF +MR+ G ++ +
Sbjct: 276 VDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVN 335

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK--- 293
            +TL  +  ACS  G  + G Q+HG   ++G   DV + +A++  Y +     +A K   
Sbjct: 336 PTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFD 395

Query: 294 ----------------------------LFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
                                       LF + +  D I   TMIT +S+ G++  +  +
Sbjct: 396 MMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIEL 455

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           FR MP +  I+W ++I G   NG   EA+  F  M +  +R +  +L+SV+SA A +++L
Sbjct: 456 FRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATL 515

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------------- 418
             G Q+   V  +G++ D  I  SLV  Y KCG                           
Sbjct: 516 NQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGF 575

Query: 419 ------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                  +AL LF++M N G KP  ITF  +LSAC H GL+++G  +F +MK  Y I+P 
Sbjct: 576 AQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPG 635

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
             HY+C+VDL  RAG L++A++LI  MP E   G+W ++L     H    + +  A+++ 
Sbjct: 636 PHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIF 695

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +L+P+NA  Y  LS +++++G    S  +R     K V K  G SW
Sbjct: 696 KLEPDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSW 741



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 161/419 (38%), Gaps = 134/419 (31%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  + ++C+       G Q+H    + G       + N ++ MY R     +A  +FD M
Sbjct: 339 LTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVF-LGNAIIIMYCRFSFVVEARKIFDMM 397

Query: 68  PRRNCFSWNAMIEGFMK-------------------------------LGHKEKSLQLFN 96
            R++  SWNA+I G+++                                G   KS++LF 
Sbjct: 398 NRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFR 457

Query: 97  VMPQKNDFSWNMLISGF---------------------------------AKADLAALEY 123
           +MP+++D +W  +ISGF                                 A A LA L  
Sbjct: 458 MMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQ 517

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G QIH+ ++  G++FD  + +SLV++Y KCG+    +Q+   +  P+    +++I+G+A 
Sbjct: 518 GLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQ 577

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                                          N    EAL LFHKM   G   +  T   V
Sbjct: 578 -------------------------------NGFGEEALELFHKMLNEGQKPNEITFLGV 606

Query: 244 LSACSSLGFLEHG--------------KQVHGHAC------KVGVIDDVI---------- 273
           LSAC+ +G LE G                 H +AC      + G +DD I          
Sbjct: 607 LSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEP 666

Query: 274 ---VASALLDTYSKRGMPSDACKLFSE----LKVYDTILLNTMITVYSSCGRIEDAKHI 325
              V  ALL   S+  +  D  KL ++    L+  +      +  +YSS GR  D++ +
Sbjct: 667 HSGVWGALLGA-SRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAGRNRDSEQV 724


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  288 bits (737), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 189/612 (30%), Positives = 295/612 (48%), Gaps = 56/612 (9%)

Query: 7   YLARLLQSCNTHH-----SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           Y    LQSC+ +H     S      LH  ++K G L +  P AN LL +Y +  N   A 
Sbjct: 286 YPPLWLQSCSLYHFTLSNSPPPLGTLHALYVKNGSLQTLNP-ANHLLTLYAKSNNMAHAQ 344

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLA 119
            LFDE+P+RN  +W  +I GF + G  E    LF  M  K        +S   K  +   
Sbjct: 345 KLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDN 404

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L+ GK +H+ +L NG+D D VLG+S+++LY KC  F  A ++  +M E D    + +I 
Sbjct: 405 NLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIG 464

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            Y   G +  +  +F R      V WN+++ G +    +  AL   + M   G    A T
Sbjct: 465 AYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVT 524

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            +  L   SSL  +E G+Q+HG   K G   D  + S+L++ Y K G    A  +  ++ 
Sbjct: 525 FSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVP 584

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + D +             R  +A+  ++  P   ++SW SM+ G   NG   + L  F  
Sbjct: 585 L-DVL-------------RKGNARVSYKE-PKAGIVSWGSMVSGYVWNGKYEDGLKTFRL 629

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M +  + +D  ++ ++ISACAN   LE G  V A V  IG   D  + +SL+D Y K G 
Sbjct: 630 MVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGS 689

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF EM N G+ P  +TF  +L+A
Sbjct: 690 LDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNA 749

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL++EG ++F  MK  Y I+P +EH + MVDL+ RAG L +  N I +        
Sbjct: 750 CSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTS 809

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W S L  C  H +  +G+ V+E ++++ P +  AY+ LS++ A++  W++++ +R +M 
Sbjct: 810 VWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMH 869

Query: 567 EKHVGKLPGCSW 578
           ++ V K PG SW
Sbjct: 870 QRGVKKQPGQSW 881


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  288 bits (737), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 184/646 (28%), Positives = 301/646 (46%), Gaps = 104/646 (16%)

Query: 37  LNSTLPIANRLLQMYMRC----------GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LNS+    NR  +  + C          G+  +A  +F  MP +N  SW AM+  + + G
Sbjct: 17  LNSSNTQGNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENG 76

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLISGFAKAD----------LAALEYGKQIHSHILVNGL 136
           H  K+ ++F  MPQ+   S+N +I+ + +++           A +     I    ++ GL
Sbjct: 77  HIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGL 136

Query: 137 DF-------------------DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
                                D V  ++L++ Y K G    A ++   M E D    S++
Sbjct: 137 ARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSM 196

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-D 236
           + GY   GK+  AR +F+R  + + V W +MI G++          LF +MR+ G ++ +
Sbjct: 197 VDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVN 256

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK--- 293
            +TL  +  ACS  G  + G Q+HG   ++G   DV + +A++  Y +     +A K   
Sbjct: 257 PTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFD 316

Query: 294 ----------------------------LFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
                                       LF + +  D I   TMIT +S+ G++  +  +
Sbjct: 317 MMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIEL 376

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           FR MP +  I+W ++I G   NG   EA+  F  M +  +R +  +L+SV+SA A +++L
Sbjct: 377 FRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATL 436

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------------- 418
             G Q+   V  +G++ D  I  SLV  Y KCG                           
Sbjct: 437 NQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGF 496

Query: 419 ------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                  +AL LF++M N G KP  ITF  +LSAC H GL+++G  +F +MK  Y I+P 
Sbjct: 497 AQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPG 556

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
             HY+C+VDL  RAG L++A++LI  MP E   G+W ++L     H    + +  A+++ 
Sbjct: 557 PHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIF 616

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +L+P+NA  Y  LS +++++G    S  +R     K V K  G SW
Sbjct: 617 KLEPDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSW 662



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 161/419 (38%), Gaps = 134/419 (31%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  + ++C+       G Q+H    + G       + N ++ MY R     +A  +FD M
Sbjct: 260 LTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVF-LGNAIIIMYCRFSFVVEARKIFDMM 318

Query: 68  PRRNCFSWNAMIEGFMK-------------------------------LGHKEKSLQLFN 96
            R++  SWNA+I G+++                                G   KS++LF 
Sbjct: 319 NRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFR 378

Query: 97  VMPQKNDFSWNMLISGF---------------------------------AKADLAALEY 123
           +MP+++D +W  +ISGF                                 A A LA L  
Sbjct: 379 MMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQ 438

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G QIH+ ++  G++FD  + +SLV++Y KCG+    +Q+   +  P+    +++I+G+A 
Sbjct: 439 GLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQ 498

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                                          N    EAL LFHKM   G   +  T   V
Sbjct: 499 -------------------------------NGFGEEALELFHKMLNEGQKPNEITFLGV 527

Query: 244 LSACSSLGFLEHG--------------KQVHGHAC------KVGVIDDVI---------- 273
           LSAC+ +G LE G                 H +AC      + G +DD I          
Sbjct: 528 LSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEP 587

Query: 274 ---VASALLDTYSKRGMPSDACKLFSE----LKVYDTILLNTMITVYSSCGRIEDAKHI 325
              V  ALL   S+  +  D  KL ++    L+  +      +  +YSS GR  D++ +
Sbjct: 588 HSGVWGALLGA-SRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAGRNRDSEQV 645


>gi|125602089|gb|EAZ41414.1| hypothetical protein OsJ_25936 [Oryza sativa Japonica Group]
          Length = 1165

 Score =  288 bits (736), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 174/571 (30%), Positives = 276/571 (48%), Gaps = 68/571 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y   G+   A L+FD+MPRRN  SWNA++  +++      +  LF  MP KN  S+
Sbjct: 75  LLTAYADGGDLASARLVFDDMPRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSY 134

Query: 107 NMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
             +ISG AKA++  L   + ++  +     D   V  ++L+  Y + G+   A +V   M
Sbjct: 135 GAIISGLAKAEM--LHEAELVYEEMPWQWRD--PVGSNALMAGYLRVGELAMALRVFEGM 190

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
              D    SA++ G    G +++ARRVFD   + + V W SMI GY+      + LLLF 
Sbjct: 191 TVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFL 250

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            MRR GV  + +TL+  L AC++      G Q+H     +G   D+ +  +++  YS+ G
Sbjct: 251 NMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFG 310

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
              DA + F  ++  D +  N++IT Y     +E+A  +F+ M  K  +SW SM+VG + 
Sbjct: 311 WMVDAKRAFDCMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFAN 370

Query: 347 -------------------------------NGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                                          NG  + A+  FC M++   + +  + + +
Sbjct: 371 RGWMRESVELFEQMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCL 430

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
           +SA A+++ L  G Q  A    +G   D  + TSLV  Y KCG                 
Sbjct: 431 LSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSL 490

Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                            DAL LF +M+N G KP  +TF  IL+ C   G V++G  +F++
Sbjct: 491 IAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFES 550

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           M+  Y ++P  EHY+CMVDL  RAG L EA+ +I  MP       W+++L     H +  
Sbjct: 551 MRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLA 610

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSG 553
             +  A++++E DP +A AY  LS +F+++G
Sbjct: 611 FAKIAAQKLLEKDPYDATAYTVLSRMFSSAG 641



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 190/452 (42%), Gaps = 98/452 (21%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N L+  Y+R G    AL +F+ M  R+  SW+AM++G  K G   ++ ++F+ MP++N 
Sbjct: 167 SNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERNV 226

Query: 104 FSWNMLISGFAK---------------------------------ADLAALEYGKQIHSH 130
            SW  +I G+ K                                 A  +    G QIH+ 
Sbjct: 227 VSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNL 286

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY--------- 181
           I+  G + D  LG S++ +Y + G    A +  + M++ D    ++LI+GY         
Sbjct: 287 IISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQHDMVEEA 346

Query: 182 ----------------------ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
                                 AN G M ++  +F++      V W ++IS +I+N +  
Sbjct: 347 HVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSFITNGDYL 406

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
            A+  F +M + G   +    + +LSA +SL  L  G+Q H ++  +G + D  V ++L+
Sbjct: 407 SAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLV 466

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
             Y+K G  ++A  +FS +     I +N+MIT +   G +ED                  
Sbjct: 467 SMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVED------------------ 508

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TII 398
                        AL LF  M     + +  +   +++ CA    ++ G   F  +  + 
Sbjct: 509 -------------ALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVY 555

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEM 428
           G++ +    T +VD   + G   +AL + N M
Sbjct: 556 GVEPNPEHYTCMVDLLGRAGLLAEALEMINSM 587



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 175/376 (46%), Gaps = 41/376 (10%)

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--- 230
           L+AL++ Y   G++ DA+ +FD+      + W ++++ Y    +   A L+F  M R   
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 231 ---NGVL---------------------EDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
              N +L                     ++A +  +++S  +    L   + V+      
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP-- 158

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
               D + ++AL+  Y + G  + A ++F  + V D I  + M+      G + +A+ +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             MP ++++SW SMI G  + G   + L LF NM +  ++++  +L+  + ACA  S   
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAR 278

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAIL 444
            G Q+   +  +G + D  +  S++  Y + G+  DA   F+ M+       I+++ +++
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQK----DIVSWNSLI 334

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           +      +V+E    F  M  +  +      ++ MV  FA  G + E+V L EQMP + +
Sbjct: 335 TGYVQHDMVEEAHVLFKLMHQKDAVS-----WTSMVVGFANRGWMRESVELFEQMPVKDE 389

Query: 505 VGMWSSILRGCVAHGD 520
           V  W++I+   + +GD
Sbjct: 390 VA-WTAIISSFITNGD 404



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 147/330 (44%), Gaps = 37/330 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L +C        G Q+H   +  G     + + + ++ MY R G   DA   FD M
Sbjct: 264 LSVALDACAAASLAREGIQIHNLIISMG-FELDIFLGDSIIIMYSRFGWMVDAKRAFDCM 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
            +++  SWN++I G+++    E++  LF +M QK+  SW  ++ GFA       ++E  +
Sbjct: 323 QQKDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFE 382

Query: 126 Q-----------IHSHILVNGLDF-----------------DSVLGSSLVNLYGKCGDFN 157
           Q           I S  + NG D+                 +++  S L++        N
Sbjct: 383 QMPVKDEVAWTAIISSFITNG-DYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLN 441

Query: 158 SANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
              Q     +NM    D    ++L+S YA CG++ +A  VF   ++ S +  NSMI+ ++
Sbjct: 442 QGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFV 501

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDV 272
            +    +AL LF KM+  G   +  T   +L+ C+  GF++ G         V GV  + 
Sbjct: 502 QHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNP 561

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYD 302
              + ++D   + G+ ++A ++ + +   D
Sbjct: 562 EHYTCMVDLLGRAGLLAEALEMINSMPQND 591


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 186/610 (30%), Positives = 302/610 (49%), Gaps = 81/610 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDALLLFDE 66
           LL +C T  S+ +   +H   +K G+ N+   ++ +LL++ +      G P  A+ +F+ 
Sbjct: 39  LLHNCKTLQSLRL---IHAQMIKTGLHNTNYALS-KLLELCVISPHFDGLPY-AISVFET 93

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALE 122
           +   N   WN M  G         +L+L+  M       N +++  L+   AK+   A +
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSK--AFK 151

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+QIH H+L  G D D  + +SL+++Y + G    A +V +     D    +ALI GYA
Sbjct: 152 EGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYA 211

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           + G +  A+++FD       V WN+MISGY       EAL LF +M +  +  D ST+ +
Sbjct: 212 SRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVT 271

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           V+SAC+  G +E G+QVH        IDD              G  S+       LK+  
Sbjct: 272 VVSACAQSGSIELGRQVHS------WIDD-------------HGFGSN-------LKI-- 303

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
              +N+++ +YS CG +E A  +F  +  K +ISWN++I G +      EAL LF  M +
Sbjct: 304 ---VNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360

Query: 363 LDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
              R +  ++ S++ ACA++ ++++G    V+    +    +   + TSL+D Y KCG  
Sbjct: 361 SGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDI 420

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                            A  +F+ MR  G++P  ITF  +LSAC
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSAC 480

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              G++  G+  F  M   Y I P++EHY CM+DL   +G   EA  +I  M  E D  +
Sbjct: 481 SRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVI 540

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W S+L+ C   G+  LG   A+ +I+++PEN   Y+ LS+I+AT+G W + + IR ++ +
Sbjct: 541 WCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLND 600

Query: 568 KHVGKLPGCS 577
           K + K+PGCS
Sbjct: 601 KGMKKVPGCS 610


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 181/618 (29%), Positives = 302/618 (48%), Gaps = 79/618 (12%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTD 59
           + R  +   L+  C+   S+   KQ H H ++ G+ +     A++L  +       +   
Sbjct: 28  NERSRHTISLIDRCS---SLRQLKQTHAHMIRTGMFSDPYS-ASKLFAIAALSSFASLEY 83

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSWNMLISGF 113
           A  +FDE+P+ N F+WN +I  +        S+  F  M         N +++  LI   
Sbjct: 84  ARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIK-- 141

Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
           A A++++L  G+ +H      G+   S +GS                         D F 
Sbjct: 142 AAAEVSSLSLGQSLH------GMAIKSAVGS-------------------------DVFV 170

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
            ++LI  Y +CG ++ A +VF    +   V WNSMI+G++      +AL LF KM    V
Sbjct: 171 ANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDV 230

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
                T+  VLSAC+ +  LE G++V  +  +  V  ++ +A+A+LD Y+K G   DA +
Sbjct: 231 KASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKR 290

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF  ++  D +   TM+  Y+     E A+ +   MP K +++WN++I    QNG P EA
Sbjct: 291 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEA 350

Query: 354 LDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           L +F  +  + ++++++ +L S +SACA + +LELG  + + +   G+  +  ++++L+ 
Sbjct: 351 LLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIH 410

Query: 413 FYCKCG---------------------------------YDALALFNEMRNTGVKPTIIT 439
            Y KCG                                  +A+ +F +M+   VKP  +T
Sbjct: 411 MYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVT 470

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           FT +  AC H GLV E +  F  M+  Y I PE +HY+C+VD+  R+G L +AV  IE M
Sbjct: 471 FTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAM 530

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           P      +W ++L  C  H +  L      R++EL+P N  A++ LS+I+A SG+W+  S
Sbjct: 531 PIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVS 590

Query: 560 LIRDIMREKHVGKLPGCS 577
            +R  MR   + K PGCS
Sbjct: 591 ELRKHMRVTGLKKEPGCS 608


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 297/596 (49%), Gaps = 78/596 (13%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +H   +K G+ N+   ++ +L++  +      G P  A+ +F+ +   N   WN M  
Sbjct: 4   RMIHAQMIKTGLHNTNYALS-KLIEFCVLSPHFDGLPY-AISVFETIQEPNLLIWNTMFR 61

Query: 81  GFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
           G         +L L+  M       N +++  L+   AK+   A   G+QIH H+L  G 
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSK--AFREGQQIHGHVLKLGY 119

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D D  + +SL+++Y + G    A +V +     D    +ALI+GYA+ G +  A+++FD 
Sbjct: 120 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDE 179

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                 V WN+MISGY     + EAL LF +M +  V  D ST+ SV+SAC+    +E G
Sbjct: 180 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 239

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           +QVH        IDD              G  S+       LK+     +N +I +Y  C
Sbjct: 240 RQVHS------WIDD-------------HGFGSN-------LKI-----VNALIDLYIKC 268

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G +E A  +F  +  K +ISWN++I G +      EAL LF  M +     +  ++ S++
Sbjct: 269 GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSIL 328

Query: 377 SACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD------ 420
            ACA++ ++E+G    V+    + G+ +     TSL+D Y KCG        +D      
Sbjct: 329 PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRS 388

Query: 421 -------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                              A  +F+ MR   ++P  ITF  +LSAC H G++  G+  F 
Sbjct: 389 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFR 448

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
           +MK  Y I P++EHY CM+DL   +G   EA  +I  M  E D  +W S+L+ C  HG+ 
Sbjct: 449 SMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNV 508

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            LG   A+ +I+++P+N  +Y+ LS+I+AT+G W + + IR ++ +K + K+PGCS
Sbjct: 509 ELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCS 564



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 240/502 (47%), Gaps = 64/502 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H H LK G  +  L +   L+ MY++ G   DA  +FD+   R
Sbjct: 94  LLKSCAKSKAFREGQQIHGHVLKLG-YDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR 152

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           +  S+ A+I G+   G+   + ++F+ +P K+  SWN +ISG+A+   +  ALE  K+  
Sbjct: 153 DVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKE-- 210

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF-------CLSALISGY 181
             ++   +  D    S++V++   C    S      +    DD         ++ALI  Y
Sbjct: 211 --MMKTNVRPDE---STMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLY 265

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
             CG++  A  +F+  +    + WN++I GY   N   EALLLF +M R+G   +  T+ 
Sbjct: 266 IKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTML 325

Query: 242 SVLSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           S+L AC+ LG +E G+ +H +  K   GV +     ++L+D Y+K               
Sbjct: 326 SILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAK--------------- 370

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG IE A+ +F ++ N+SL SWN+MI G + +G    A D+F  
Sbjct: 371 ----------------CGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSR 414

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-- 417
           M K ++  D  +   ++SAC++   L+LG  +F       +  D  I+  L  + C    
Sbjct: 415 MRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFR-----SMKEDYKITPKLEHYGCMIDL 469

Query: 418 -GYDAL-ALFNEMRNT-GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
            G+  L     EM NT  ++P  + + ++L AC   G V+ G+ +   +     I+P+  
Sbjct: 470 LGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNL---IKIEPKNP 526

Query: 475 -HYSCMVDLFARAGCLNEAVNL 495
             Y  + +++A AG  NE   +
Sbjct: 527 GSYVLLSNIYATAGRWNEVAKI 548


>gi|413917533|gb|AFW57465.1| hypothetical protein ZEAMMB73_932577 [Zea mays]
          Length = 677

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 185/635 (29%), Positives = 307/635 (48%), Gaps = 73/635 (11%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L  LL S      I   +QL     ++ +++ T      LL  Y   G+   A L+FD+
Sbjct: 41  HLNALLTSYGRRGRIQDAQQLFDRMPRRDVISWTA-----LLTAYAEGGDFASARLVFDD 95

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           MPRRN  SWNA++  ++  G    +  LF   P KN  S+ ++I+G A+A +  L   + 
Sbjct: 96  MPRRNAVSWNALLSLYLGAGRPAAAHALFCKTPAKNAVSYGVIITGLARAGM--LREAQA 153

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           ++  +     D   V  ++++  Y + G+ + A +V + M   D    S+++ G    G 
Sbjct: 154 VYGEMPPRLRD--PVGSNAMILGYLRAGEIDMALRVFDTMAARDVISWSSMVDGLCKYGT 211

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +++ARR+F+   + + V W SM+ GY+      E LLLF  MRR GV  +A TL+ VL  
Sbjct: 212 VSEARRLFEAMPERNVVSWTSMVRGYVKCGMYREGLLLFLDMRREGVQVNAITLSVVLDG 271

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+    +  G QVH    ++G + D+ +  +L+  YS+ G   DA ++F+ +K  D +  
Sbjct: 272 CAQASLVGEGIQVHCLMTRMGFVTDIFLDGSLIIMYSRFGWMVDARRVFAFMKQKDIVSW 331

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF--------- 357
           N++IT Y     IEDA  +F+ MP +  ISW S++VG +  G   E+++LF         
Sbjct: 332 NSLITGYVQNNMIEDAHVLFKLMPERDAISWTSVVVGFANRGWMRESVELFEQMPVKDDI 391

Query: 358 ----------------------CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
                                 C M++   R +  + + ++SA A+++ L  G Q  A  
Sbjct: 392 AWTAVISSFIANGNHVSVVRWFCQMSQEGCRPNTAAFSCLLSALASLAMLNQGLQAHAYA 451

Query: 396 TIIGLDSDQIISTSLVDFYCKCGY---------------------------------DAL 422
             +G   D  +  SLV  Y KCG                                  DAL
Sbjct: 452 VNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCIRNPSLVAINSMISAFAQHGLAEDAL 511

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LFN M+  G +P  +TF  IL+AC   GLV++G  +F++M+  Y I P  +HY+CMV+L
Sbjct: 512 KLFNRMQYDGQRPNHVTFLGILTACARAGLVQQGYNYFESMRSVYGIQPNPDHYTCMVNL 571

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542
              AG L+EA+ +I  MP +     W+++L     H +  L +  A+R++E+DP +  AY
Sbjct: 572 LGHAGFLDEALEMINSMPQKDYPDAWAALLSSSSLHSNLDLAKLAAQRLLEIDPYDTTAY 631

Query: 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
             L+++F+++G      +++         K PG S
Sbjct: 632 RVLTNMFSSAGLKGDEEMVKVAQLSNMASKRPGYS 666



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 183/381 (48%), Gaps = 41/381 (10%)

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           P+   L+AL++ Y   G++ DA+++FDR      + W ++++ Y    +   A L+F  M
Sbjct: 37  PNRAHLNALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLVFDDM 96

Query: 229 -RRNGV--------------------------LEDASTLASVLSACSSLGFLEHGKQVHG 261
            RRN V                           ++A +   +++  +  G L   + V+G
Sbjct: 97  PRRNAVSWNALLSLYLGAGRPAAAHALFCKTPAKNAVSYGVIITGLARAGMLREAQAVYG 156

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
                  + D + ++A++  Y + G    A ++F  +   D I  ++M+      G + +
Sbjct: 157 EMPP--RLRDPVGSNAMILGYLRAGEIDMALRVFDTMAARDVISWSSMVDGLCKYGTVSE 214

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+ +F  MP ++++SW SM+ G  + G   E L LF +M +  ++++  +L+ V+  CA 
Sbjct: 215 ARRLFEAMPERNVVSWTSMVRGYVKCGMYREGLLLFLDMRREGVQVNAITLSVVLDGCAQ 274

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIIT 439
            S +  G QV   +T +G  +D  +  SL+  Y + G+  DA  +F  M+    +  I++
Sbjct: 275 ASLVGEGIQVHCLMTRMGFVTDIFLDGSLIIMYSRFGWMVDARRVFAFMK----QKDIVS 330

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           + ++++      ++++    F  M  +  I      ++ +V  FA  G + E+V L EQM
Sbjct: 331 WNSLITGYVQNNMIEDAHVLFKLMPERDAIS-----WTSVVVGFANRGWMRESVELFEQM 385

Query: 500 PFEADVGMWSSILRGCVAHGD 520
           P + D+  W++++   +A+G+
Sbjct: 386 PVKDDIA-WTAVISSFIANGN 405



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 16/269 (5%)

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
           H   V V+ +    +ALL +Y +RG   DA +LF  +   D I    ++T Y+  G    
Sbjct: 29  HPLPVRVLPNRAHLNALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFAS 88

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+ +F  MP ++ +SWN+++      G P  A  LFC         +  S   +I+  A 
Sbjct: 89  ARLVFDDMPRRNAVSWNALLSLYLGAGRPAAAHALFCKTPA----KNAVSYGVIITGLAR 144

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFT 441
              L   + V+  +       D + S +++  Y + G   +AL   + +T     +I+++
Sbjct: 145 AGMLREAQAVYGEMP--PRLRDPVGSNAMILGYLRAGEIDMAL--RVFDTMAARDVISWS 200

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           +++      G V E ++ F+AM      +  +  ++ MV  + + G   E + L   M  
Sbjct: 201 SMVDGLCKYGTVSEARRLFEAMP-----ERNVVSWTSMVRGYVKCGMYREGLLLFLDMRR 255

Query: 502 EA---DVGMWSSILRGCVAHGDKGLGRKV 527
           E    +    S +L GC      G G +V
Sbjct: 256 EGVQVNAITLSVVLDGCAQASLVGEGIQV 284


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 199/654 (30%), Positives = 311/654 (47%), Gaps = 116/654 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C    ++  G++ H   +K G L+    + N LL MY +CG+  DA+ LFD M
Sbjct: 145 LASVLSACGAVAALDDGRRCHGLAVKVG-LDGHQFVENGLLGMYTKCGSVADAVRLFDGM 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA-----DL 118
           P  N  S+ AM+ G  + G  + +L+LF  M +     +  + + ++   A+A     ++
Sbjct: 204 PSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNV 263

Query: 119 A-ALEYGKQIHSHILVNGLDFDSVLGSSLVNLY--------------------------- 150
           A A++  + IH+ ++  G   D  +G+SLV+LY                           
Sbjct: 264 ARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNIL 323

Query: 151 ----GKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMND---ARRVFDRTTD 199
               G+ G +  A +VL  M+E    P++   S ++   A+C K  D   AR +FD+   
Sbjct: 324 ITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNML---ASCIKARDVPSARAMFDKIPK 380

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            S   WN+++SGY       E + LF +M+   V  D +TLA +LS+CS LG  E GKQV
Sbjct: 381 PSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQV 440

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H  + ++ + +D+ VAS L+D YSK                               CG++
Sbjct: 441 HSASVRLLLHNDMFVASGLIDIYSK-------------------------------CGQV 469

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
             A  IF  M  + ++ WNSMI GL+ +    EA D    M +  +   + S AS+I+ C
Sbjct: 470 GIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLC 529

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------- 418
           A +SS+  G Q+ A+V   G D +  +  SL+D Y K G                     
Sbjct: 530 ARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWN 589

Query: 419 ------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                         A+ LF  M  T  KP  +TF A+L+ C H GLV E   +F++M+  
Sbjct: 590 EMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESN 649

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           Y I P +EHY+C++D  ARA    E   +I +MP++ D  +W  +L  CV H +  LG  
Sbjct: 650 YGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAELGEF 709

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            A+ +  LDP+N   Y+ LS+I+AT G    +S +R +M  + V K  G SW +
Sbjct: 710 SAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVN 763



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/585 (23%), Positives = 252/585 (43%), Gaps = 88/585 (15%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K  H   L  G+   T  + NRL+++Y   G P  AL  F  +P  N +S+NA I    +
Sbjct: 30  KAAHARVLAAGLAADTF-LLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACR 88

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGS 144
            G    +  L   MP +N  SWN +I+  A++   +     +++  +L  GL   +   +
Sbjct: 89  AGDLAAARDLLGRMPDRNAVSWNTVIAAVARS--GSPGEALEMYQGMLQEGLAPTNFTLA 146

Query: 145 SLVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
           S+++  G     +   +     + +  +   F  + L+  Y  CG + DA R+FD     
Sbjct: 147 SVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSP 206

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS--------LGF 252
           + V + +M+ G        +AL LF +M R G+  D   ++SVL AC+            
Sbjct: 207 NEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARA 266

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           ++  + +H    + G   D  V ++L+D Y+K     +A K+F  L     +  N +IT 
Sbjct: 267 IQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITG 326

Query: 313 Y--------------------------------SSCGRIED---AKHIFRTMPNKSLISW 337
           Y                                +SC +  D   A+ +F  +P  S+ +W
Sbjct: 327 YGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTW 386

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N+++ G  Q     E +DLF  M   +++ D+ +LA ++S+C+ + + ELG+QV +    
Sbjct: 387 NTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVR 446

Query: 398 IGLDSDQIISTSLVDFYCKCGYDALAL--FN----------------------------- 426
           + L +D  +++ L+D Y KCG   +AL  FN                             
Sbjct: 447 LLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDF 506

Query: 427 --EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
             +MR  G+ PT  ++ ++++ C     + +G++   A   +   D  +     ++D++A
Sbjct: 507 LKQMRENGMFPTESSYASMINLCARLSSIPQGRQ-MHAQVLKDGYDQNVYVGCSLIDMYA 565

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           ++G +++A      M  +  V  W+ ++ G   +   G G K  E
Sbjct: 566 KSGNMDDARLFFNCMIVKNLVA-WNEMIHG---YAQNGFGEKAVE 606



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 217/491 (44%), Gaps = 81/491 (16%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K  H+ +L  GL  D+ L + LV LY   G    A +    +  P+ +  +A IS     
Sbjct: 30  KAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRA 89

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G +  AR +  R  D ++V WN++I+    +    EAL ++  M + G+     TLASVL
Sbjct: 90  GDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVL 149

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SAC ++  L+ G++ HG A KVG+     V + LL  Y+K G  +DA +LF  +      
Sbjct: 150 SACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGM------ 203

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                                    P+ + +S+ +M+ GL+Q G+  +AL LF  M++  
Sbjct: 204 -------------------------PSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTG 238

Query: 365 LRMDKFSLASVISACA-------NIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           +R+D  +++SV+ ACA       N++ +++L + + A V   G  SDQ +  SLVD Y K
Sbjct: 239 IRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAK 298

Query: 417 --------------------------CGYDALALFNE-------MRNTGVKPTIITFTAI 443
                                      GY  L  +         M+ +G +P  +T++ +
Sbjct: 299 GMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNM 358

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--- 500
           L++C     V   +  FD +       P +  ++ ++  + +     E ++L  +M    
Sbjct: 359 LASCIKARDVPSARAMFDKIP-----KPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQN 413

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ-LSSIFATSGEWEKSS 559
            + D    + IL  C   G+  LG++V    + L   N       L  I++  G+   + 
Sbjct: 414 VQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIAL 473

Query: 560 LIRDIMREKHV 570
           +I ++M E+ V
Sbjct: 474 IIFNMMTERDV 484



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 112/220 (50%), Gaps = 7/220 (3%)

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
           + K  H      G+  D  + + L++ YS  G+P  A + F  L   +    N  I+   
Sbjct: 28  NAKAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAAC 87

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
             G +  A+ +   MP+++ +SWN++I  ++++GSP EAL+++  M +  L    F+LAS
Sbjct: 88  RAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLAS 147

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTG 432
           V+SAC  +++L+ G +       +GLD  Q +   L+  Y KCG   DA+ LF+ M +  
Sbjct: 148 VLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPS-- 205

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAM-KWQYHIDP 471
             P  ++FTA++      G V +  + F  M +    +DP
Sbjct: 206 --PNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDP 243


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 191/658 (29%), Positives = 304/658 (46%), Gaps = 140/658 (21%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           FL K   +  + +   L+  Y++ GN   A L+FD +P ++  +W  MI G +K+G    
Sbjct: 173 FLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYV 232

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 148
           SLQLF  + + N      ++S    A   L  LE GKQIH+HIL  G + D+ L      
Sbjct: 233 SLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASL------ 286

Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
                                    ++ LI  Y  CG++  A ++FD   + + + W ++
Sbjct: 287 -------------------------MNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTL 321

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           +SGY  N+   EA+ LF  M + G+  D    +S+L++C+SL  LE G QVH +  K  +
Sbjct: 322 LSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANL 381

Query: 269 -------------------------------IDDVIVASALLDTYSKRGMP---SDACKL 294
                                           DDV++ +A+++ YS+ G      DA  +
Sbjct: 382 GNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNI 441

Query: 295 FSELKV---------------------------------------YDTILLNTMITVYSS 315
           F +++                                         D    + +I VYS+
Sbjct: 442 FHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSN 501

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
           C  ++D++ +F  M  K L+ WNSM  G  Q     EAL+LF  +     R D+F+   +
Sbjct: 502 CYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDM 561

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD------- 420
           ++A  N++SL+LG++   ++   GL+ +  I+ +L+D Y KCG        +D       
Sbjct: 562 VTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDV 621

Query: 421 ------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                             AL +  +M   G++P  ITF  +LSAC H GLV++G K F+ 
Sbjct: 622 VCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFEL 681

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           M  ++ I+PE EHY CMV L  RAG LNEA  LIE+MP +    +W S+L GC   G+  
Sbjct: 682 M-LRFGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVE 740

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           L    AE  I  DP+++ ++  LS+I+A+ G W  +  +R+ M+ + V K PG SW +
Sbjct: 741 LAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIE 798



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/555 (25%), Positives = 251/555 (45%), Gaps = 108/555 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            ARLLQ       +     +H   +  G+   T  ++N L+ +Y R G    A  +F++M
Sbjct: 47  FARLLQLRALDDPLLYHNVVHGQIIVSGLELDTY-LSNILMNLYSRAGGMVYARKVFEKM 105

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKADLAALEYGK- 125
           P RN  +W+ M+      G  E+SL +F +    + +     ++S F +A       G+ 
Sbjct: 106 PERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRW 165

Query: 126 ---QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
              Q+ S ++ +  D D  +G+ L++ Y K G+ + A  V + + E              
Sbjct: 166 MVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPE-------------- 211

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
                             S+V W +MISG +       +L LF+++    V+ D   L++
Sbjct: 212 -----------------KSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILST 254

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VLSACS L FLE GKQ+H H  + G   D  + + L+D+Y K                  
Sbjct: 255 VLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVK------------------ 296

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CGR+  A  +F  MPNK++ISW +++ G  QN    EA++LF +M K
Sbjct: 297 -------------CGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPK 343

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
             L+ D F+ +S++++CA++ +LE G QV A      L +D  ++ SL+D Y KC     
Sbjct: 344 FGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTE 403

Query: 418 ---------------------GY----------DALALFNEMRNTGVKPTIITFTAILSA 446
                                GY          DAL +F++MR   ++P+++TF ++L A
Sbjct: 404 ARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRA 463

Query: 447 CDHCGLVKEG-QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
                L   G  K    + +++ ++ +I   S ++ +++   CL ++  + ++M  + D+
Sbjct: 464 S--ASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVK-DL 520

Query: 506 GMWSSILRGCVAHGD 520
            +W+S+  G V   +
Sbjct: 521 VIWNSMFSGYVQQSE 535


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 175/610 (28%), Positives = 284/610 (46%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+ +C++  ++  G+QLH +  K G   S   I   LL +Y +C +   AL  F E 
Sbjct: 375 LASLVVACSSDGTLFSGQQLHAYTTKLG-FASNDKIEGALLNLYAKCSDIETALNYFLET 433

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              N   WN M+  +  L     S ++F  M  +    N +++  ++    +  L  LE 
Sbjct: 434 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR--LGDLEL 491

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIHS I+      ++                               +  S LI  YA 
Sbjct: 492 GEQIHSQIIKTSFQLNA-------------------------------YVCSVLIDMYAK 520

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            GK++ A  +  R      V W +MI+GY   N D +AL  F +M   G+  D   L + 
Sbjct: 521 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 580

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +SAC+ L  L+ G+Q+H  AC  G   D               +P               
Sbjct: 581 VSACAGLQALKEGQQIHAQACVSGFSSD---------------LP--------------- 610

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
              N ++T+YS CG IE+A   F        I+WN+++ G  Q+G+  EAL +F  MN+ 
Sbjct: 611 -FQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNRE 669

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            +  + F+  S + A +  ++++ G+QV A +T  G DS+  +  +++  Y KCG     
Sbjct: 670 GIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDA 729

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL  F++M ++ V+P  +T   +LSAC H 
Sbjct: 730 KKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 789

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV +G ++F++M  +Y + P+ EHY C+VD+  RAG L+ A + I +MP E D  +W +
Sbjct: 790 GLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRT 849

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  CV H +  +G   A  ++EL+PE++  Y+ LS+++A   +W+   L R  M+EK V
Sbjct: 850 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGV 909

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 910 KKEPGQSWIE 919



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 153/586 (26%), Positives = 252/586 (43%), Gaps = 116/586 (19%)

Query: 8   LARLLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  LL+ C  T+ S+  G++LH   LK G  N+   ++ +LL  Y+  G+   AL +FDE
Sbjct: 70  LKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNAC-LSEKLLDFYLFKGDLDGALKVFDE 128

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEY 123
           MP R  F+WN MI+         K   LF  M  +N        SG  +A      A + 
Sbjct: 129 MPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDV 188

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            +QIH+ I+  GL   +++ + L++LY + G                             
Sbjct: 189 VEQIHARIIYQGLGKSTIVCNPLIDLYSRNG----------------------------- 219

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
              ++ ARRVFD         W +MISG   N  + EA+ LF  M   G++      +SV
Sbjct: 220 --FVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSV 277

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSAC  +  LE G+Q+HG   K+G   D  V +AL+  Y   G    A  +FS +   D 
Sbjct: 278 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDA 337

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           +  NT+I   S CG  E A  +F+ M                                +L
Sbjct: 338 VTYNTLINGLSQCGYGEKAMELFKRM--------------------------------QL 365

Query: 364 D-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
           D L  D  +LAS++ AC++  +L  G+Q+ A  T +G  S+  I  +L++ Y KC     
Sbjct: 366 DGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIET 425

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         ++  +F +M+   + P   T+ +IL  C  
Sbjct: 426 ALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 485

Query: 450 CGLVKEGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
            G ++ G++     +K  + ++  +   S ++D++A+ G L+ A +++ +   + DV  W
Sbjct: 486 LGDLELGEQIHSQIIKTSFQLNAYV--CSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSW 542

Query: 509 SSILRGCVAHG--DKGLG--RKVAERMIELD------PENACAYIQ 544
           ++++ G   +   DK L   R++ +R I  D        +ACA +Q
Sbjct: 543 TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 588



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 133/548 (24%), Positives = 241/548 (43%), Gaps = 108/548 (19%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           V +Q+H   + +G+  ST+ + N L+ +Y R G    A  +FD +  ++  SW AMI G 
Sbjct: 188 VVEQIHARIIYQGLGKSTI-VCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGL 246

Query: 83  MKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
            K   + ++++LF       +MP    FS   ++S   K  + +LE G+Q+H  +L  G 
Sbjct: 247 SKNECEVEAIRLFCDMYVLGIMPTPYAFS--SVLSACKK--IESLEIGEQLHGLVLKLGF 302

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
             D+ + ++LV+LY                     F L +LIS          A  +F  
Sbjct: 303 SSDTYVCNALVSLY---------------------FHLGSLIS----------AEHIFSN 331

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
            +   +V +N++I+G        +A+ LF +M+ +G+  D++TLAS++ ACSS G L  G
Sbjct: 332 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSG 391

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           +Q+H +  K+G   +  +  ALL+ Y+K      A   F E +V + +L N M+  Y   
Sbjct: 392 QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAY--- 448

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G ++D ++ FR                            +F  M   ++  ++++  S++
Sbjct: 449 GLLDDLRNSFR----------------------------IFRQMQIEEIVPNQYTYPSIL 480

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
             C  +  LELGEQ+ +++       +  + + L+D Y K G                  
Sbjct: 481 KTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVV 540

Query: 419 -------------YD--ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                        +D  AL  F +M + G++   +  T  +SAC     +KEGQ+   A 
Sbjct: 541 SWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQ 599

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
                   ++   + +V L+++ G + EA    EQ     ++  W++++ G    G+   
Sbjct: 600 ACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIA-WNALVSGFQQSGNNEE 658

Query: 524 GRKVAERM 531
             +V  RM
Sbjct: 659 ALRVFARM 666



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 190/459 (41%), Gaps = 108/459 (23%)

Query: 97  VMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
           + P      W  L+ G  K +  +L+ G+++HS IL  G D ++ L   L++ Y   GD 
Sbjct: 63  IRPNHQTLKW--LLEGCLKTN-GSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGD- 118

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
                                         ++ A +VFD   + +   WN MI    S +
Sbjct: 119 ------------------------------LDGALKVFDEMPERTIFTWNKMIKELASRS 148

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSAC--SSLGFLEHGKQVHGHACKVGVIDDVIV 274
              +   LF +M    V  +  T + VL AC   S+ F +  +Q+H      G+    IV
Sbjct: 149 LSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAF-DVVEQIHARIIYQGLGKSTIV 207

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            + L+D                               +YS  G ++ A+ +F  +  K  
Sbjct: 208 CNPLID-------------------------------LYSRNGFVDRARRVFDGLYLKDH 236

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
            SW +MI GLS+N   +EA+ LFC+M  L +    ++ +SV+SAC  I SLE+GEQ+   
Sbjct: 237 SSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGL 296

Query: 395 VTIIGLDSDQIISTSLVDFY-------------------------------CKCGY--DA 421
           V  +G  SD  +  +LV  Y                                +CGY   A
Sbjct: 297 VLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 356

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMV 480
           + LF  M+  G++P   T  +++ AC   G +  GQ+      K  +  + +IE    ++
Sbjct: 357 MELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIE--GALL 414

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           +L+A+   +  A+N   +   E +V +W+ +L   VA+G
Sbjct: 415 NLYAKCSDIETALNYFLETEVE-NVVLWNVML---VAYG 449


>gi|125560040|gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indica Group]
          Length = 1165

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 174/571 (30%), Positives = 276/571 (48%), Gaps = 68/571 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y   G+   A L+FD+MPRRN  SWNA++  +++      +  LF  MP KN  S+
Sbjct: 75  LLTAYADGGDLASARLVFDDMPRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSY 134

Query: 107 NMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
             +ISG AKA++  L   + ++  +     D   V  ++L+  Y + G+   A +V   M
Sbjct: 135 GAIISGLAKAEM--LHEAELVYEEMPWQWRD--PVGSNALMAGYLRVGELAMALRVFEGM 190

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
              D    SA++ G    G +++ARRVFD   + + V W SMI GY+      + LLLF 
Sbjct: 191 TVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFL 250

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            MRR GV  + +TL+  L AC++      G Q+H     +G   D+ +  +++  YS+ G
Sbjct: 251 NMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFG 310

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
              DA + F  ++  D +  N++IT Y     +E+A  +F+ M  K  +SW SM+VG + 
Sbjct: 311 CMVDAKRAFDCMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFAN 370

Query: 347 -------------------------------NGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                                          NG  + A+  FC M++   + +  + + +
Sbjct: 371 RGWMRESVELFEQMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCL 430

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
           +SA A+++ L  G Q  A    +G   D  + TSLV  Y KCG                 
Sbjct: 431 LSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSL 490

Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                            DAL LF +M+N G KP  +TF  IL+ C   G V++G  +F++
Sbjct: 491 IAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFES 550

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           M+  Y ++P  EHY+CMVDL  RAG L EA+ +I  MP       W+++L     H +  
Sbjct: 551 MRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLA 610

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSG 553
             +  A++++E DP +A AY  LS +F+++G
Sbjct: 611 FAKIAAQKLLEKDPYDATAYTVLSRMFSSAG 641



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 190/452 (42%), Gaps = 98/452 (21%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N L+  Y+R G    AL +F+ M  R+  SW+AM++G  K G   ++ ++F+ MP++N 
Sbjct: 167 SNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERNV 226

Query: 104 FSWNMLISGFAK---------------------------------ADLAALEYGKQIHSH 130
            SW  +I G+ K                                 A  +    G QIH+ 
Sbjct: 227 VSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNL 286

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY--------- 181
           I+  G + D  LG S++ +Y + G    A +  + M++ D    ++LI+GY         
Sbjct: 287 IISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDIVSWNSLITGYVQHDMVEEA 346

Query: 182 ----------------------ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
                                 AN G M ++  +F++      V W ++IS +I+N +  
Sbjct: 347 HVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSFITNGDYL 406

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
            A+  F +M + G   +    + +LSA +SL  L  G+Q H ++  +G + D  V ++L+
Sbjct: 407 SAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLV 466

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
             Y+K G  ++A  +FS +     I +N+MIT +   G +ED                  
Sbjct: 467 SMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVED------------------ 508

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TII 398
                        AL LF  M     + +  +   +++ CA    ++ G   F  +  + 
Sbjct: 509 -------------ALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVY 555

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEM 428
           G++ +    T +VD   + G   +AL + N M
Sbjct: 556 GVEPNPEHYTCMVDLLGRAGLLAEALEMINSM 587



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 174/376 (46%), Gaps = 41/376 (10%)

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--- 230
           L+AL++ Y   G++ DA+ +FD+      + W ++++ Y    +   A L+F  M R   
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 231 ---NGVL---------------------EDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
              N +L                     ++A +  +++S  +    L   + V+      
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP-- 158

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
               D + ++AL+  Y + G  + A ++F  + V D I  + M+      G + +A+ +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             MP ++++SW SMI G  + G   + L LF NM +  ++++  +L+  + ACA  S   
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAR 278

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAIL 444
            G Q+   +  +G + D  +  S++  Y +  C  DA   F+ M+       I+++ +++
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQK----DIVSWNSLI 334

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           +      +V+E    F  M  +  +      ++ MV  FA  G + E+V L EQMP + +
Sbjct: 335 TGYVQHDMVEEAHVLFKLMHQKDAVS-----WTSMVVGFANRGWMRESVELFEQMPVKDE 389

Query: 505 VGMWSSILRGCVAHGD 520
           V  W++I+   + +GD
Sbjct: 390 VA-WTAIISSFITNGD 404



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 147/330 (44%), Gaps = 37/330 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L +C        G Q+H   +  G     + + + ++ MY R G   DA   FD M
Sbjct: 264 LSVALDACAAASLAREGIQIHNLIISMG-FELDIFLGDSIIIMYSRFGCMVDAKRAFDCM 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
            +++  SWN++I G+++    E++  LF +M QK+  SW  ++ GFA       ++E  +
Sbjct: 323 QQKDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFE 382

Query: 126 Q-----------IHSHILVNGLDF-----------------DSVLGSSLVNLYGKCGDFN 157
           Q           I S  + NG D+                 +++  S L++        N
Sbjct: 383 QMPVKDEVAWTAIISSFITNG-DYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLN 441

Query: 158 SANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
              Q     +NM    D    ++L+S YA CG++ +A  VF   ++ S +  NSMI+ ++
Sbjct: 442 QGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFV 501

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDV 272
            +    +AL LF KM+  G   +  T   +L+ C+  GF++ G         V GV  + 
Sbjct: 502 QHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNP 561

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYD 302
              + ++D   + G+ ++A ++ + +   D
Sbjct: 562 EHYTCMVDLLGRAGLLAEALEMINSMPQND 591


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 184/635 (28%), Positives = 313/635 (49%), Gaps = 78/635 (12%)

Query: 3   TRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           TR+D+  L  +L++C    S   G   H      G   S + I N L+ MY RCG+  +A
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLEEA 171

Query: 61  LLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLIS 111
            ++FDE+ +R   +  SWN+++   +K  +   +L LF+ M         N+ S  + I 
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 231

Query: 112 GFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
               A   L A+   K++H + + NG   D  +G++L++ Y KCG   +A +V NMM+  
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLF 225
           D    +A+++GY+  G    A  +F      +     V W ++I+GY       EAL +F
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M  +G L +  T+ SVLSAC+SLG    G ++H ++ K          + LL   +  
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK----------NCLLTLDNDF 401

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVG 343
           G   +           D ++ N +I +YS C   + A+ IF  +P   +++++W  MI G
Sbjct: 402 GGEDE-----------DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 450

Query: 344 LSQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL- 400
            +Q G   +AL LF  M      +  + ++++ ++ ACA+++++ +G+Q+ A V      
Sbjct: 451 HAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQY 510

Query: 401 -DSDQIISTSLVDFYCKCG---------------------------------YDALALFN 426
             S   ++  L++ Y KCG                                  +AL +F+
Sbjct: 511 DSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD 570

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +MR  G  P  ITF  +L AC HCG+V +G  +FD+M   Y + P  EHY+  +DL AR 
Sbjct: 571 KMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARF 630

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G L++A   ++ MP E    +W ++L  C  H +  L      +++E++ EN  +Y  +S
Sbjct: 631 GRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLIS 690

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADG 581
           +I+AT+G W+  + IR +M++  + K PGCSW  G
Sbjct: 691 NIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQG 725



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 127/542 (23%), Positives = 237/542 (43%), Gaps = 91/542 (16%)

Query: 51  YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           Y+ CG    ALL+ + +       WN +I   +K G  + ++ +   M +      +  +
Sbjct: 61  YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTL 120

Query: 111 SGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 168
               KA  +L +   G   H  I  NG + +  + ++LV +Y +CG    A+ + + + +
Sbjct: 121 PHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQ 180

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
                                      R  D   + WNS++S ++ ++    AL LF KM
Sbjct: 181 ---------------------------RGID-DVISWNSIVSAHVKSSNAWTALDLFSKM 212

Query: 229 ------RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
                 +      D  ++ ++L AC SL  +   K+VHG+A + G   DV V +AL+D Y
Sbjct: 213 TLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAY 272

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS----LISWN 338
           +K G+  +A K+F+ ++  D +  N M+  YS  G  + A  +F+ M  ++    +++W 
Sbjct: 273 AKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWT 332

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--- 395
           ++I G SQ G   EAL++F  M       +  ++ SV+SACA++ +   G ++ A     
Sbjct: 333 AVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKN 392

Query: 396 -------TIIGLDSDQIISTSLVDFYCKC------------------------------- 417
                     G D D ++  +L+D Y KC                               
Sbjct: 393 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 452

Query: 418 ----GYDALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                 DAL LF EM     GV P   T + IL AC H   ++ G++   A   ++H   
Sbjct: 453 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ-IHAYVLRHHQYD 511

Query: 472 EIEHY--SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
              ++  +C+++++++ G ++ A ++ + M  ++ +  W+S++ G   HG       + +
Sbjct: 512 SSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFD 570

Query: 530 RM 531
           +M
Sbjct: 571 KM 572



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 162/367 (44%), Gaps = 50/367 (13%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + +++ Y  CG  + A  V +R T + +V WN +I  +I       A+ +  +M R G  
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D  TL  VL AC  L     G   HG  C  G   +V + +AL+  YS+          
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR---------- 164

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPI 351
                                CG +E+A  IF  +  + +   ISWNS++    ++ +  
Sbjct: 165 ---------------------CGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAW 203

Query: 352 EALDLFCNMNKL------DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
            ALDLF  M  +      + R D  S+ +++ AC ++ ++   ++V       G   D  
Sbjct: 204 TALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVF 263

Query: 406 ISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
           +  +L+D Y KCG   +A+ +FN M    V    +++ A+++     G  K   + F  M
Sbjct: 264 VGNALIDAYAKCGLMENAVKVFNMMEFKDV----VSWNAMVAGYSQSGNFKAAFELFKNM 319

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG---MWSSILRGCVAHGD 520
           + + +I  ++  ++ ++  +++ GC +EA+N+  QM F   +       S+L  C + G 
Sbjct: 320 R-KENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGA 378

Query: 521 KGLGRKV 527
              G ++
Sbjct: 379 FSQGMEI 385


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 168/561 (29%), Positives = 282/561 (50%), Gaps = 85/561 (15%)

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--- 113
           P DA  LFDEMP RN  SWN ++ G+MK G  +++ ++F++MP++N  SW  L+ G+   
Sbjct: 64  PRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHN 123

Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
            K D+A   + K        N + +  +L   L +     G  + A ++  M+ + D+  
Sbjct: 124 GKVDVAESLFWKMPEK----NKVSWTVMLIGFLQD-----GRIDDACKLYEMIPDKDNIA 174

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
            +++I G    G++++AR +FD  ++ S + W +M++GY  NN                 
Sbjct: 175 RTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNR---------------- 218

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           ++DA  +  V+   + + +                       +++L  Y + G   DA +
Sbjct: 219 VDDARKIFDVMPEKTEVSW-----------------------TSMLMGYVQNGRIEDAEE 255

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF  + V   I  N MI+     G I  A+ +F +M  ++  SW ++I    +NG  +EA
Sbjct: 256 LFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEA 315

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           LDLF  M K  +R    +L S++S CA+++SL  G+QV A++     D D  +++ L+  
Sbjct: 316 LDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTM 375

Query: 414 YCKCGY---------------------------------DALALFNEMRNTG-VKPTIIT 439
           Y KCG                                  +AL +F EM  +G  KP  +T
Sbjct: 376 YIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVT 435

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           F A LSAC + G+V+EG K +++M+  + + P   HY+CMVD+  RAG  NEA+ +I+ M
Sbjct: 436 FVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSM 495

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
             E D  +W S+L  C  H    +    A+++IE++PEN+  YI LS+++A+ G W   +
Sbjct: 496 TVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVA 555

Query: 560 LIRDIMREKHVGKLPGCSWAD 580
            +R +M+ + V K PGCSW +
Sbjct: 556 ELRKLMKTRLVRKSPGCSWTE 576



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 10/180 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C +  S+H GKQ+H   ++    +  + +A+ L+ MY++CG    + L+FD  
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQ-FDVDVYVASVLMTMYIKCGELVKSKLIFDRF 392

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISGFAKADLAALE 122
           P ++   WN++I G+   G  E++L++F  MP     + N+ ++   +S  + A +  +E
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGM--VE 450

Query: 123 YGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
            G +I+  +  V G+   +   + +V++ G+ G FN A ++++ M  EPD     +L+  
Sbjct: 451 EGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 176/604 (29%), Positives = 292/604 (48%), Gaps = 103/604 (17%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           +C+    + +G+Q+H   +K     S L + N L+ MY + G+  D   LF+ +  ++  
Sbjct: 157 ACSELGDLGLGRQVHAQAIKWES-GSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLI 215

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAKADLAALEYGKQIH 128
           SW ++I G  + G +  +LQ+F  M        N+F +  +    +   + +LEYG+QIH
Sbjct: 216 SWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVV-VNSLEYGEQIH 274

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
              +   LD +S  G SL ++Y                               A C +++
Sbjct: 275 GVSVKYQLDRNSYAGCSLSDMY-------------------------------ARCNELD 303

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR+VF R      V WNS+I+ + +    +EA++LF +MR +G+  D  T+ ++L AC 
Sbjct: 304 SARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACV 363

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
               L  G+ +H +  K+G+  DVIV+                               N+
Sbjct: 364 GYDALHQGRSIHSYLVKLGLGGDVIVS-------------------------------NS 392

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           ++++Y+ C     A  +F    ++ +++WNS++    Q+    +   LF  +++    +D
Sbjct: 393 LLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLD 452

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
           + SL +V+SA A +   E+ +QV A    +GL  D ++S  L+D Y KCG          
Sbjct: 453 RISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFE 512

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                    +AL LF  MRN GVKP  +TF  +L+AC   GLV 
Sbjct: 513 IMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRVGLVD 572

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG  ++  MK +Y I P  EH SC++DL ARAG L+EA   ++QMPFE D+ MW ++L  
Sbjct: 573 EGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKTLLAA 632

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
              H D  +G++ AE ++ +DP ++ AY+ L +I+A+SG W + + ++  MR   V K P
Sbjct: 633 SRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKSP 692

Query: 575 GCSW 578
           G SW
Sbjct: 693 GKSW 696



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 177/356 (49%), Gaps = 26/356 (7%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LI+ Y  CG  + AR VFD   D + V W ++I+ +  N+   +A+ LF  M R+G + D
Sbjct: 88  LITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPD 147

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
              L S + ACS LG L  G+QVH  A K     D+IV +AL+  YSK G   D   LF 
Sbjct: 148 QFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFE 207

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-------PNK----SLISWNSMIVGLS 345
            ++  D I   ++I   +  GR  DA  IFR M       PN+    S+    S++V   
Sbjct: 208 RIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSL 267

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           + G  I  + +     K  L  + ++  S+    A  + L+   +VF R+     +S  +
Sbjct: 268 EYGEQIHGVSV-----KYQLDRNSYAGCSLSDMYARCNELDSARKVFYRI-----ESPDL 317

Query: 406 IS-TSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
           +S  SL++ +   G   +A+ LF+EMR++G++P  IT  A+L AC     + +G+     
Sbjct: 318 VSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSY 377

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
           +  +  +  ++   + ++ ++AR    + A+++  +   + DV  W+SIL  CV H
Sbjct: 378 LV-KLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHET-HDRDVVTWNSILTACVQH 431



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 126/307 (41%), Gaps = 61/307 (19%)

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS L  L  G+ VH H          ++AS+  D +                  ++TIL 
Sbjct: 52  CSRLRSLPQGRLVHRH----------LLASSARDRF----------------LAHNTILS 85

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +IT+Y  CG  + A+ +F  M +++ +SW ++I   +QN    +A+ LF +M +    
Sbjct: 86  NHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTM 145

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D+F+L S I AC+ +  L LG QV A+       SD I+  +LV  Y K G        
Sbjct: 146 PDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFAL 205

Query: 419 -------------------------YDALALFNEMRNTGV-KPTIITFTAILSACDHCGL 452
                                     DAL +F EM   GV  P    F ++  AC     
Sbjct: 206 FERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVN 265

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
             E  +    +  +Y +D        + D++AR   L+ A  +  ++    D+  W+S++
Sbjct: 266 SLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIE-SPDLVSWNSLI 324

Query: 513 RGCVAHG 519
               A G
Sbjct: 325 NAFSAKG 331


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 195/651 (29%), Positives = 308/651 (47%), Gaps = 110/651 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C    ++  G++ H   +K G L+    + N LL MY +CG+  DA+ LFD M
Sbjct: 44  LASVLSACGAVAALDDGRRCHGLAVKVG-LDGHQFVENGLLGMYTKCGSVADAVRLFDGM 102

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA-----DL 118
           P  N  S+ AM+ G  + G  + +L+LF  M +     +  + + ++   A+A     ++
Sbjct: 103 PSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNV 162

Query: 119 A-ALEYGKQIHSHILVNGLDFDSVLGSSLVNLY--------------------------- 150
           A A++  + IH+ ++  G   D  +G+SLV+LY                           
Sbjct: 163 ARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNIL 222

Query: 151 ----GKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
               G+ G +  A +VL  M+E    P++   S +++       +  AR +FD+    S 
Sbjct: 223 ITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSV 282

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
             WN+++SGY       E + LF +M+   V  D +TLA +LS+CS LG  E GKQVH  
Sbjct: 283 TTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSA 342

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           + ++ + +D+ VAS L+D YSK                               CG++  A
Sbjct: 343 SVRLLLHNDMFVASGLIDIYSK-------------------------------CGQVGIA 371

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             IF  M  + ++ WNSMI GL+ +    EA D    M +  +   + S AS+I+ CA +
Sbjct: 372 LIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARL 431

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------ 418
           SS+  G Q+ A+V   G D +  +  SL+D Y K G                        
Sbjct: 432 SSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMI 491

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                      A+ LF  M  T  KP  +TF A+L+ C H GLV E   +F++M+  Y I
Sbjct: 492 HGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGI 551

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P +EHY+C++D  ARA    E   +I +MP++ D  +W  +L  CV H +  LG   A+
Sbjct: 552 TPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAELGEFSAK 611

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +  LDP+N   Y+ LS+I+AT G    +S +R +M  + V K  G SW +
Sbjct: 612 HLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVN 662



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 123/541 (22%), Positives = 226/541 (41%), Gaps = 114/541 (21%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYG 124
           MP RN  SWN +I    + G   ++L+++  M Q+     N  ++    A   +AAL+ G
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           ++ H   +  GLD    + + L+ +Y KC                               
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKC------------------------------- 89

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G + DA R+FD     + V + +M+ G        +AL LF +M R G+  D   ++SVL
Sbjct: 90  GSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVL 149

Query: 245 SACSS--------LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
            AC+            ++  + +H    + G   D  V ++L+D Y+K     +A K+F 
Sbjct: 150 GACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFE 209

Query: 297 ELKVYDTILLNTMITVY--------------------------------SSCGRIED--- 321
            L     +  N +IT Y                                +SC +  D   
Sbjct: 210 SLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPS 269

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+ +F  +P  S+ +WN+++ G  Q     E +DLF  M   +++ D+ +LA ++S+C+ 
Sbjct: 270 ARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSR 329

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALAL--FN------------- 426
           + + ELG+QV +    + L +D  +++ L+D Y KCG   +AL  FN             
Sbjct: 330 LGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSM 389

Query: 427 ------------------EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
                             +MR  G+ PT  ++ ++++ C     + +G++   A   +  
Sbjct: 390 ISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQ-MHAQVLKDG 448

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
            D  +     ++D++A++G +++A      M  +  V  W+ ++ G   +   G G K  
Sbjct: 449 YDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVA-WNEMIHG---YAQNGFGEKAV 504

Query: 529 E 529
           E
Sbjct: 505 E 505



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 185/417 (44%), Gaps = 81/417 (19%)

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           D ++V WN++I+    +    EAL ++  M + G+     TLASVLSAC ++  L+ G++
Sbjct: 3   DRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRR 62

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
            HG A KVG+     V + LL  Y+K G  +DA +LF  +                    
Sbjct: 63  CHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGM-------------------- 102

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
                      P+ + +S+ +M+ GL+Q G+  +AL LF  M++  +R+D  +++SV+ A
Sbjct: 103 -----------PSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGA 151

Query: 379 CA-------NIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCK-------------- 416
           CA       N++ +++L + + A V   G  SDQ +  SLVD Y K              
Sbjct: 152 CAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESL 211

Query: 417 ------------CGYDALALFNE-------MRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                        GY  L  +         M+ +G +P  +T++ +L++C     V   +
Sbjct: 212 SSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSAR 271

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRG 514
             FD +       P +  ++ ++  + +     E ++L  +M     + D    + IL  
Sbjct: 272 AMFDKIP-----KPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSS 326

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQ-LSSIFATSGEWEKSSLIRDIMREKHV 570
           C   G+  LG++V    + L   N       L  I++  G+   + +I ++M E+ V
Sbjct: 327 CSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDV 383


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 179/604 (29%), Positives = 295/604 (48%), Gaps = 98/604 (16%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     +  GKQ+H   +K G  +    +   LL MY +C     A  +F+E+P + 
Sbjct: 248 LSACGQGEFVSFGKQVHCDAIKVGFEDDPY-VHTSLLTMYGKCQMIESAEKVFNEVPDKE 306

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI-SGFAKADLAAL-EYGKQIHS 129
              WNA+I  ++  G+   +L+++  M      S +  I +    + +A L + G+ IH+
Sbjct: 307 IELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHT 366

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            I+   L     + S+L+ +Y K GD                       S YAN      
Sbjct: 367 EIVKRPLQSSITIQSALLTMYSKFGD-----------------------SNYAN------ 397

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
              +F    +   V W S+ISG+  N +  EAL  F  M  + V  D+  +AS++SAC+ 
Sbjct: 398 --SIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTG 455

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  ++ G  +HG   K G+  DV VAS+LLD YSK G P                     
Sbjct: 456 LEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFP--------------------- 494

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                     E A +IF  MP K+L++WNS+I    +N  P  +++LF  + + DL  D 
Sbjct: 495 ----------ERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDS 544

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------- 419
            S  SV++A +++++L  G+ V   +  + +  D  +  +L+D Y KCG           
Sbjct: 545 VSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFER 604

Query: 420 -----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                   A+ LF+EMR++G+KP  +TF ++LS+C+H GL++EG
Sbjct: 605 ISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEG 664

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
              F+ MK ++ I+P +EHY  +VDL+ RAGCL +A + ++ MP E D  +W S+L  C 
Sbjct: 665 LHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCK 724

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  LG  VA +++ ++P     Y+QL +++  +  W++++ +R  M+EK + K PGC
Sbjct: 725 IHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGC 784

Query: 577 SWAD 580
           SW +
Sbjct: 785 SWIE 788



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/536 (24%), Positives = 238/536 (44%), Gaps = 107/536 (19%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
           GKQ+H  ++ + +LN    +   L+  Y +CG PT+A  LF ++  R N  +WN MI GF
Sbjct: 158 GKQIH-SYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGF 216

Query: 83  MKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            + G  E SL+ + +   +N      S+   +S   + +  +  +GKQ+H   +  G + 
Sbjct: 217 GENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVS--FGKQVHCDAIKVGFED 274

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D  + +SL+ +YGK                               C  +  A +VF+   
Sbjct: 275 DPYVHTSLLTMYGK-------------------------------CQMIESAEKVFNEVP 303

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           D    +WN++IS Y+ N    +AL ++ +M+   VL D+ T+ +VL++ S  G  + G+ 
Sbjct: 304 DKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRL 363

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +H    K  +   + + SALL  YSK G  + A  +FS                      
Sbjct: 364 IHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFS---------------------- 401

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
                    TM  + +++W S+I G  QN    EALD F  M    ++ D   +AS+ISA
Sbjct: 402 ---------TMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISA 452

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--------------- 423
           C  +  ++LG  +   V   GL  D  +++SL+D Y K G+   A               
Sbjct: 453 CTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAW 512

Query: 424 ------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM-K 464
                             LF+++    + P  ++FT++L+A      + +G+     + +
Sbjct: 513 NSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVR 572

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
                D ++E+   ++D++ + G L  A ++ E++  E ++  W+S++ G  +HG+
Sbjct: 573 LWIPFDLQVEN--TLIDMYIKCGLLKYAQHIFERIS-EKNLVAWNSMIGGYGSHGE 625



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 138/520 (26%), Positives = 238/520 (45%), Gaps = 65/520 (12%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           TR  Y   LL++C +  ++  GK +H   +  G L+S   I + L+ +Y++CG  TDA+ 
Sbjct: 52  TRFTY-PSLLKACASLSNLQYGKTIHSSIITTG-LHSDQYITSSLINIYVKCGTFTDAVK 109

Query: 63  LFDEMPRR-----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD 117
           +FD++P+      +   WN++I+G+ + G  E+ +  F  M            SG+ +  
Sbjct: 110 VFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQS----------SGYKE-- 157

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
                 GKQIHS+I+ N L+FD  L ++L++ Y K                         
Sbjct: 158 ------GKQIHSYIVRNMLNFDPFLETALIDTYFK------------------------- 186

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
                 CG+  +AR +F +  D S+++ WN MI G+  N     +L  +   +   V   
Sbjct: 187 ------CGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVV 240

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           +S+    LSAC    F+  GKQVH  A KVG  DD  V ++LL  Y K  M   A K+F+
Sbjct: 241 SSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFN 300

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           E+   +  L N +I+ Y   G   DA  I++ M   +++S +  I+ +  + S     DL
Sbjct: 301 EVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDL 360

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS-TSLVDFYC 415
              ++   ++    S  ++ SA   + S + G+  +A      +    +++  S++  +C
Sbjct: 361 GRLIHTEIVKRPLQSSITIQSALLTMYS-KFGDSNYANSIFSTMKERDVVAWGSVISGFC 419

Query: 416 --KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPE 472
             +   +AL  F  M    VKP      +I+SAC     V  G       +K    +D  
Sbjct: 420 QNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVF 479

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           +   S ++D++++ G    A N+   MP +  V  W+SI+
Sbjct: 480 VA--SSLLDMYSKFGFPERAGNIFSDMPLKNLVA-WNSII 516



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 137/298 (45%), Gaps = 35/298 (11%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D +A ++ +C     + +G  +H   +K G L   + +A+ LL MY + G P  A  +F 
Sbjct: 444 DIMASIISACTGLEKVDLGCTIHGFVIKSG-LQLDVFVASSLLDMYSKFGFPERAGNIFS 502

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEY 123
           +MP +N  +WN++I  + +    + S+ LF+ + + + +  ++  +    A + +AAL  
Sbjct: 503 DMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLK 562

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK +H +++   + FD  + ++L+++Y KCG    A  +   + E +    +++I GY  
Sbjct: 563 GKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYG- 621

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                                         S+ E ++A+ LF +MR +G+  D  T  S+
Sbjct: 622 ------------------------------SHGECSKAIELFDEMRSSGIKPDDVTFLSL 651

Query: 244 LSACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           LS+C+  G +E G  +      K G+   +     ++D Y + G   DA      + V
Sbjct: 652 LSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPV 709


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 192/682 (28%), Positives = 311/682 (45%), Gaps = 144/682 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+++    + ++ GKQ+H H LK G L     + N LL MY +CG   +A+ +F+ M  R
Sbjct: 45  LIKAFGGLYDVNKGKQIHGHLLKFGFLQDIF-VKNSLLGMYWKCGAGGNAVDMFERMEER 103

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK----ADLAALEYGKQ 126
           +  SWN MI GF + G   KSL +F  M ++   S++  ++  A     A +  L +G +
Sbjct: 104 DSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLE 163

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  ++  G+D                                D+F +SALI  Y  CG 
Sbjct: 164 IHGFLVKKGVD-------------------------------SDEFLVSALIEMYMKCGD 192

Query: 187 MNDARRVFDRTTDTSSV-----MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           + +A  VF+R  D   V     +WN MI GY+SN   + AL LF +M   G+  D+ST+ 
Sbjct: 193 IKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVV 252

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY------------------- 282
            VL  CS L  L  GKQ+HG    +G+ DDV V +AL++ Y                   
Sbjct: 253 VVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNH 312

Query: 283 ------------SKRGMPSDACKLFSELKV------------------------------ 300
                       ++ G P++A + FSE  +                              
Sbjct: 313 NLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIH 372

Query: 301 ---------YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
                     D  +   ++  Y  CG +E A+ +F  +  + L+SWN++I G +QN    
Sbjct: 373 GFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCAD 432

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           EAL  F +M    ++ +  ++A ++S C ++S + L ++V   +     +++ +++ SL+
Sbjct: 433 EALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLI 492

Query: 412 DFYCKCGY---------------------------------DALALFNEMRNTGVKPTII 438
             Y KCG                                  +  A F +M+   +KP   
Sbjct: 493 SAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHG 552

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TFT++LS+C H G V  G K+F++M   Y+++P +E Y+CMVDL  RAG LN+A +LI  
Sbjct: 553 TFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMS 612

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MP   D  +W S+L  C  HG+  L   VA  + ELD  +    + L++++  SG   + 
Sbjct: 613 MPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRVLLANLYEDSGNLNEV 672

Query: 559 SLIRDIMREKHVGKLPGCSWAD 580
             +R  +++  + K PGCSW +
Sbjct: 673 FRVRTDIKQMGLKKQPGCSWIE 694



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 31/200 (15%)

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           +E+      ++ A   L  +  GKQ+HGH  K G + D+ V ++LL  Y K G   +A  
Sbjct: 36  VEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVD 95

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +F  ++  D++  NTMI+ +   G    +  +FR M  +   S+++ +  L         
Sbjct: 96  MFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACL--------- 146

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
                               + +S+CA+I  L  G ++   +   G+DSD+ + ++L++ 
Sbjct: 147 --------------------AALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEM 186

Query: 414 YCKCG--YDALALFNEMRNT 431
           Y KCG   +A  +F  +R+ 
Sbjct: 187 YMKCGDIKNAENVFERIRDN 206



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 102/211 (48%), Gaps = 11/211 (5%)

Query: 8   LARLLQSCNTHHSIHV-GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +A +L  C TH S+ +  K++H + L+     + L + N L+  Y +CG+   +  +F++
Sbjct: 453 MACILSVC-THLSVMILCKEVHCYLLRHWFETNAL-VNNSLISAYAKCGDIHSSRTVFEK 510

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLAALE 122
           +P RN  +WN+++ GF   G  ++    F  M + N      ++  L+S  + +      
Sbjct: 511 LPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAG 570

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA-NQVLNMMKEPDDFCLSALISGY 181
           + K  +S +    L+      + +V+L G+ G+ N A + +++M   PDD    +L++  
Sbjct: 571 W-KYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASC 629

Query: 182 ANCGKMNDARRVFDR--TTDTSSVMWNSMIS 210
            N G    A  V +     D SSV +  +++
Sbjct: 630 KNHGNTKLAEVVANHIFELDASSVGYRVLLA 660


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 183/620 (29%), Positives = 295/620 (47%), Gaps = 113/620 (18%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +   LLQ C    S    + +H H +K G  +    + + L+ +Y +CGN  DA  +FD 
Sbjct: 69  FYVPLLQQCLDTRSYSETQIVHGHVMKTGC-HDNFFVMSFLVNVYAKCGNMEDARRVFDN 127

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYG 124
           M RRN  +W  ++ GF++    + ++ +F  M     +     +S    A   L +L+ G
Sbjct: 128 MLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLG 187

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
            Q H++I+   +DFD+ +GS+L +LY KC                               
Sbjct: 188 DQFHAYIIKYHVDFDASVGSALCSLYSKC------------------------------- 216

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G++ DA + F R  + + + W S +S    N    + L LF +M    +  +  TL S L
Sbjct: 217 GRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSAL 276

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S C  +  LE G QV+    K G   ++ V ++LL  Y K G   +A +LF+        
Sbjct: 277 SQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFN-------- 328

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-------------NGSPI 351
                        R++DA          S+++WN+MI G +Q              GS  
Sbjct: 329 -------------RMDDA----------SMVTWNAMIAGHAQMMELTKDNLSACHRGS-- 363

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           EAL LF  +N   ++ D F+L+SV+S C+ + ++E GEQ+ A+    G  SD I+STSL+
Sbjct: 364 EALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLI 423

Query: 412 DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
             Y KCG                                   AL +F +M   GV+P  +
Sbjct: 424 SMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAV 483

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TF  +LSAC H G+V +   +F+ M+ +Y I P ++HY CMVD+F R G L +A+N I++
Sbjct: 484 TFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKK 543

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           M +E    +WS+ + GC +HG+  LG   AE+++ L P++   Y+ L +++ ++  +E  
Sbjct: 544 MNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLLNMYLSAERFEDV 603

Query: 559 SLIRDIMREKHVGKLPGCSW 578
           S +R +M E+ VGKL   SW
Sbjct: 604 SRVRKMMEEEKVGKLKDWSW 623


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 184/635 (28%), Positives = 314/635 (49%), Gaps = 78/635 (12%)

Query: 3   TRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           TR+D+  L  +L++C    S   G   H      G   S + I N L+ MY RCG+  +A
Sbjct: 6   TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNG-FESNVFICNALVAMYSRCGSLEEA 64

Query: 61  LLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGF 113
            ++FDE+ +R   +  SWN+++   +K  +   +L LF+ M     +K     + +IS  
Sbjct: 65  SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 124

Query: 114 ----AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
               A   L A+   K++H + + NG   D  +G++L++ Y KCG   +A +V NMM+  
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 184

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLF 225
           D    +A+++GY+  G    A  +F      +     V W ++I+GY       EAL +F
Sbjct: 185 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 244

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M  +G L +  T+ SVLSAC+SLG    G ++H ++ K          + LL   +  
Sbjct: 245 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK----------NCLLTLDNDF 294

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVG 343
           G   +           D ++ N +I +YS C   + A+ IF  +P   +++++W  MI G
Sbjct: 295 GGEDE-----------DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 343

Query: 344 LSQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL- 400
            +Q G   +AL LF  M      +  + ++++ ++ ACA+++++ +G+Q+ A V      
Sbjct: 344 HAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQY 403

Query: 401 -DSDQIISTSLVDFYCKCG---------------------------------YDALALFN 426
             S   ++  L++ Y KCG                                  +AL +F+
Sbjct: 404 DSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD 463

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +MR  G  P  ITF  +L AC HCG+V +G  +FD+M   Y + P  EHY+  +DL AR 
Sbjct: 464 KMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARF 523

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G L++A   ++ MP E    +W ++L  C  H +  L      +++E++ EN  +Y  +S
Sbjct: 524 GRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLIS 583

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADG 581
           +I+AT+G W+  + IR +M++  + K PGCSW  G
Sbjct: 584 NIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQG 618



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 50/314 (15%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M R G   D  TL  VL AC  L     G   HG  C  G   +V + +AL+  YS+   
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR--- 57

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL---ISWNSMIVGL 344
                                       CG +E+A  IF  +  + +   ISWNS++   
Sbjct: 58  ----------------------------CGSLEEASMIFDEITQRGIDDVISWNSIVSAH 89

Query: 345 SQNGSPIEALDLFCNMNKL------DLRMDKFSLASVISACANISSLELGEQVFARVTII 398
            ++ +   ALDLF  M  +      + R D  S+ +++ AC ++ ++   ++V       
Sbjct: 90  VKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN 149

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
           G   D  +  +L+D Y KCG   +A+ +FN M    V    +++ A+++     G  K  
Sbjct: 150 GTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV----VSWNAMVAGYSQSGNFKAA 205

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG---MWSSILR 513
            + F  M+ + +I  ++  ++ ++  +++ GC +EA+N+  QM F   +       S+L 
Sbjct: 206 FELFKNMR-KENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLS 264

Query: 514 GCVAHGDKGLGRKV 527
            C + G    G ++
Sbjct: 265 ACASLGAFSQGMEI 278


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 187/610 (30%), Positives = 303/610 (49%), Gaps = 81/610 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDALLLFDE 66
           LL +C T  S+   + +H   +K G+ N+   ++ +L++  +      G P  A+ +F+ 
Sbjct: 8   LLHNCKTLQSL---RMIHAQMIKTGLHNTNYALS-KLIEFCVLSPHFDGLPY-AISVFET 62

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALE 122
           +   N   WN M  G         +L L+  M       N +++  L+   AK+   A  
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSK--AFR 120

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+QIH H+L  G D D  + +SL+++Y + G    A +V +     D    +ALI+GYA
Sbjct: 121 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA 180

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           + G +  A+++FD       V WN+MISGY     + EAL LF +M +  V  D ST+ S
Sbjct: 181 SKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 240

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           V+SAC+    +E G+QVH        IDD              G  S+       LK+  
Sbjct: 241 VVSACAQSASIELGRQVHS------WIDD-------------HGFGSN-------LKI-- 272

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
              +N +I +Y  CG +E A  +F  +  K +ISWN++I G +      EAL LF  M +
Sbjct: 273 ---VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 329

Query: 363 LDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                +  ++ S++ ACA++ ++E+G    V+    + G+ +     TSL+D Y KCG  
Sbjct: 330 SGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDI 389

Query: 419 ------YD-------------------------ALALFNEMRNTGVKPTIITFTAILSAC 447
                 +D                         A  +F+ MR   ++P  ITF  +LSAC
Sbjct: 390 EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSAC 449

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H G++  G+  F +MK  Y I P++EHY CM+DL   +G   EA  +I  M  E D  +
Sbjct: 450 SHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 509

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W S+L+ C  + +  LG   A+ +I+++P+N  +Y+ LS+I+AT+G W + + IR ++ +
Sbjct: 510 WCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLND 569

Query: 568 KHVGKLPGCS 577
           K + K+PGCS
Sbjct: 570 KGMKKVPGCS 579


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 178/615 (28%), Positives = 293/615 (47%), Gaps = 110/615 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    S+   K LH H +K G +     +A  L+ +YMRCGN  DA  LFDEMP +
Sbjct: 84  LLHRCIETGSLGGAKALHGHMVKTGTIVDIF-VATSLVNVYMRCGNSQDARNLFDEMPEK 142

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIH 128
           N  +W A+I G+        +L++F  M +   +  +  + G   A +A+  ++ GKQ+H
Sbjct: 143 NVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVH 202

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            + +  G    + +G+SL  LY K G+  S                              
Sbjct: 203 GYTIKYGAASITSIGNSLCRLYTKSGNLESG----------------------------- 233

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTE-ALLLFHKMRRNGVLEDASTLASVLSAC 247
              R F R  D + + W +MIS    +   TE  L LF  M +  V+ +  TL SV+S C
Sbjct: 234 --IRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLC 291

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
            +   +  GKQV G   K+G   ++ V                                N
Sbjct: 292 GTSLDMNLGKQVQGFCFKIGCATNLPVK-------------------------------N 320

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-----------NGSPIEALDL 356
           + + +Y   G  E+A  +F  M + S+I+WN+MI G +Q                +AL +
Sbjct: 321 STMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKI 380

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F ++ +  ++ D F+ +S++S C+ + +LE GEQ+ A+    G  SD +++++LV+ Y K
Sbjct: 381 FRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNK 440

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                 +DA+ LF +M   G KP  ITF ++
Sbjct: 441 CGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSL 500

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC + GLV+E  ++FD M+ +YHI+P ++HY CM+D+F R G L++A   I++  FE 
Sbjct: 501 LSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEP 560

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           +  +WSS++ GC +HG+  L    A+R++EL P+    Y+ L +++ ++G W   + +R 
Sbjct: 561 NEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARVRK 620

Query: 564 IMREKHVGKLPGCSW 578
           + + + +G L   SW
Sbjct: 621 LSKHEDLGILRDRSW 635



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 124/461 (26%), Positives = 211/461 (45%), Gaps = 59/461 (12%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY L  +L +C   H+I +GKQ+H + +K G  + T  I N L ++Y + GN    +  F
Sbjct: 179 DYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASIT-SIGNSLCRLYTKSGNLESGIRAF 237

Query: 65  DEMPRRNCFSWNAMI------EGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISG 112
             +P +N  +W  MI      E + +LG     L LF       VMP  N+F+   ++S 
Sbjct: 238 KRIPDKNVITWTTMISACAEDENYTELG-----LNLFLDMLKGEVMP--NEFTLTSVMSL 290

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
              +    +  GKQ+       G   +  + +S + LY + G+   A ++   M++    
Sbjct: 291 CGTS--LDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVI 348

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
             +A+ISG+A         ++ D   D      ++   G+       +AL +F  + R+ 
Sbjct: 349 TWNAMISGFA---------QIMDSAKDD----LHARSRGF-------QALKIFRDLVRSA 388

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +  D  T +S+LS CS++  LE G+Q+H    K G + DV+V SAL++ Y+K G    A 
Sbjct: 389 MKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYAT 448

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQ 346
           K F E+     +   +MI+ YS  GR  DA  +F  M      PN+  I++ S++   S 
Sbjct: 449 KAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNE--ITFVSLLSACSY 506

Query: 347 NGSPIEAL---DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
            G   EA+   D+  N   ++  MD +    +I     +  L   +  +A +   G + +
Sbjct: 507 AGLVEEAMRYFDMMQNEYHIEPLMDHY--GCMIDMFVRLGRL---DDAYAFIKRKGFEPN 561

Query: 404 QIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAIL 444
           + I +SLV      G   LA +   R   +KP ++    +L
Sbjct: 562 EAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVVETYVLL 602



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 37/222 (16%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M + G    ++    +L  C   G L   K +HGH  K G I D+ VA++L++ Y + G 
Sbjct: 69  MLKEGQSVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGN 128

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             DA  LF E                               MP K++++W ++I G + N
Sbjct: 129 SQDARNLFDE-------------------------------MPEKNVVTWTALITGYTLN 157

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
             P+ AL++F  M KL      ++L  ++SAC    +++LG+QV       G  S   I 
Sbjct: 158 SQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIG 217

Query: 408 TSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSAC 447
            SL   Y K G     +  F  + +  V    IT+T ++SAC
Sbjct: 218 NSLCRLYTKSGNLESGIRAFKRIPDKNV----ITWTTMISAC 255


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 175/599 (29%), Positives = 305/599 (50%), Gaps = 68/599 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  +++ G+   A  LFD MP R+  S+  M++  MK G   ++++L+   P  +   +
Sbjct: 158 MVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 217

Query: 107 NMLISGFAKADL---AALEYGKQIHSHILVNGLDFD----------------SVLGS--- 144
              ISGF + +L   A   + K +   +  NG+ F                 S++GS   
Sbjct: 218 TATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIK 277

Query: 145 ------------SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
                       SL+ LY + GD  +A +V + M   D    +AL+  Y+  G ++ ARR
Sbjct: 278 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARR 337

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           V D   + + V W ++I+ +       EA+ L+ +M  +G   + S  +SVLSAC++L  
Sbjct: 338 VLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLED 397

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L  G ++H  + K+G   +V V+S+L+D Y K     DA  +F  L   + +  N++ + 
Sbjct: 398 LRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASG 457

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           YS  G++ +A ++F+ MP ++L SWN++I G +QN   ++AL  F  M        + + 
Sbjct: 458 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITF 517

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
           +SV+ ACAN+ SL  G+   A+   +G++    I T+L D Y K G              
Sbjct: 518 SSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPE 577

Query: 419 -------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                               +++ LF +M  TG+ P   TF A+L AC H GLV++   +
Sbjct: 578 RNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHY 637

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           F+ M+  + I P+ +HY+CMVD+ ARAG L EA  L+ + P +++   W+++L  C  + 
Sbjct: 638 FEKMQ-AWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYK 696

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           ++ +G + A+R+ EL  +N   Y+ LS+++A+ G W+ ++ IR +M+   + K  GCSW
Sbjct: 697 NEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSW 755



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 160/399 (40%), Gaps = 102/399 (25%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C T   +  G ++H   LK G  ++ + +++ L+ MY +C    DA  +F
Sbjct: 382 ISCFSSVLSACATLEDLRGGARIHARSLKMGS-STNVFVSSSLIDMYCKCKKCRDAQTIF 440

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------- 115
           D +P +N   WN++  G+   G   +++ LF  MP +N  SWN +ISG+A+         
Sbjct: 441 DTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALR 500

Query: 116 ------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
                                   A+L +L  GK  H+  +  G++    +G++L ++Y 
Sbjct: 501 SFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYA 560

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           K GD  S+ ++   M E +D                               V W +MI G
Sbjct: 561 KSGDLQSSKRMFYQMPERND-------------------------------VTWTAMIQG 589

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG--------------K 257
              N    E++LLF  M   G+  +  T  ++L ACS  G +E                K
Sbjct: 590 LAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPK 649

Query: 258 QVHGHACKVGVI---DDVIVASALL-------------------DTYSKRGMPSDACKLF 295
           + H + C V V+     +I A ALL                   +TY    +   A K  
Sbjct: 650 EKH-YTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRL 708

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            EL   +T     +  +Y+SCGR +DA  I   M   +L
Sbjct: 709 HELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTL 747



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 169/419 (40%), Gaps = 68/419 (16%)

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE---LKVYDTILLNTMITVYSS 315
           +H HA + GV  D  VAS LL TY+     ++  + F +            + M+  +  
Sbjct: 105 LHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHEHVK 164

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL------------------- 356
            G I  A+ +F  MP +S++S+ +M+  L + G   EA++L                   
Sbjct: 165 AGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGF 224

Query: 357 ------------FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG----- 399
                       F  M    +R +  +   +I AC       L       ++I+G     
Sbjct: 225 VRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLA------MSIVGSAIKS 278

Query: 400 --LDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
              +S   +  SL+  Y + G  A A  +F+EM    VK  ++++TA+L      G +  
Sbjct: 279 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEM---DVK-DVVSWTALLDVYSESGDLDG 334

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSIL 512
            ++  DAM  +  +      +  ++    + G   EAV L  QM  +    ++  +SS+L
Sbjct: 335 ARRVLDAMPERNEVS-----WGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVL 389

Query: 513 RGCVAHGDKGLGRKVAERMIEL-DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
             C    D   G ++  R +++    N      L  ++    +   +  I D + EK++ 
Sbjct: 390 SACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNI- 448

Query: 572 KLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQHQSADFCDYIHGFDQARLPLSSKRSF 630
            +   S A G ++N   ++ M+L    F ++     A +   I G+ Q R  + + RSF
Sbjct: 449 -VCWNSLASGYSYNGKMVEAMYL----FKKMPARNLASWNTIISGYAQNRQFVDALRSF 502


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 176/581 (30%), Positives = 288/581 (49%), Gaps = 107/581 (18%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-- 98
           L ++N L+ MY +CG    A  +FD M +RN  SW A++ G ++ G+  +SL LF+ M  
Sbjct: 7   LMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGL 66

Query: 99  ----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
               P    FS N+   G     L  L+ G+QIH   +  G D  +V+G+S++++Y KC 
Sbjct: 67  SGVKPNDFTFSTNLKACGL----LNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC- 121

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
                                         G++N+A  +F+     + + WN+MI+GY  
Sbjct: 122 ------------------------------GRINEAACMFEVMPVRNLISWNAMIAGYTV 151

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV-- 272
                +AL+LF KM+  G   D  T  S L ACS LG ++ G Q+H      G +  V  
Sbjct: 152 AGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNT 211

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            VA AL+D Y K                               CG++  A+ +F  +  K
Sbjct: 212 AVAGALIDLYVK-------------------------------CGKLFMARRVFSHIEEK 240

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
            +ISW ++I+G +Q G+  E+++LF  + +  +++D F L+S++   A+ + ++ G+Q+ 
Sbjct: 241 HVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMH 300

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------------- 419
           A    +    D  +  S++D Y KCG                                  
Sbjct: 301 AFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGK 360

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
           +A+ LF+EM+    +P  +T+ A+L  C H GLV++GQ++F  +   + I   +EHY+CM
Sbjct: 361 EAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACM 420

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VDL  RAG L EA NL++ MP EA+VG+W ++L  C  HGD  LG++V   ++ LD EN 
Sbjct: 421 VDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENP 480

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             Y+ +S+I+A +G W++   IR++++ K + K  G SW +
Sbjct: 481 VNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVE 521



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 181/427 (42%), Gaps = 102/427 (23%)

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           G  FD +L + L+ +YGKC                               G++  A  VF
Sbjct: 2   GFGFDLMLSNDLIVMYGKC-------------------------------GRLGVACDVF 30

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           DR    + V W +++ G+I N    E+LLLF KM  +GV  +  T ++ L AC  L  L+
Sbjct: 31  DRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLD 90

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G+Q+H    K G     +V ++++D YSK G  ++A  +F  + V + I  N MI  Y+
Sbjct: 91  IGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYT 150

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
             G  E                               +AL LF  M ++   +D+F+  S
Sbjct: 151 VAGFCE-------------------------------KALVLFQKMQEVGGFLDEFTFTS 179

Query: 375 VISACANISSLELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCGY------------- 419
            + AC+++ +++ G Q+ A +   G     +  ++ +L+D Y KCG              
Sbjct: 180 TLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEE 239

Query: 420 --------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                               +++ LF ++R + ++      ++++       LV++G K 
Sbjct: 240 KHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQG-KQ 298

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             A   +     +I   + ++D++ + G +NEA  L  +MP   +V  W+ ++ G   +G
Sbjct: 299 MHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMP-ARNVISWTVMITG---YG 354

Query: 520 DKGLGRK 526
             GLG++
Sbjct: 355 KHGLGKE 361



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 43/275 (15%)

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
           +D +L N +I +Y  CGR+  A  +F  M  ++++SW +++ G  QNG+P+E+L LF  M
Sbjct: 5   FDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKM 64

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
               ++ + F+ ++ + AC  ++ L++G Q+       G D   ++  S++D Y KCG  
Sbjct: 65  GLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRI 124

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                            AL LF +M+  G      TFT+ L AC
Sbjct: 125 NEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKAC 184

Query: 448 DHCGLVKEGQK---WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
              G +KEG +   +     + Y ++  +     ++DL+ + G L  A  +   +  E  
Sbjct: 185 SDLGAIKEGNQIHAFLITGGFLYSVNTAVA--GALIDLYVKCGKLFMARRVFSHIE-EKH 241

Query: 505 VGMWSSILRGCVAHGDKG----LGRKVAERMIELD 535
           V  W++++ G    G+      L R++ E  I++D
Sbjct: 242 VISWTALILGYAQEGNLAESMELFRQLRESSIQVD 276



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 44/292 (15%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNST-LPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L++C+   +I  G Q+H   +  G L S    +A  L+ +Y++CG    A  +F  +  +
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SW A+I G+ + G+  +S++LF  +     Q + F  + ++  F  AD A ++ GKQ
Sbjct: 241 HVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVF--ADFALVQQGKQ 298

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H+  +      D  + +S++++Y KCG  N A ++ + M   +    + +I+GY   G 
Sbjct: 299 MHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGL 358

Query: 187 MNDARRVFDR----TTDTSSVMWNSMI-----SGYISNNEDTEALLL-FHKMR------- 229
             +A R+FD     +T+   V + +++     SG +   ++  + L  +H ++       
Sbjct: 359 GKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYA 418

Query: 230 -------RNGVLEDASTLA-------------SVLSACSSLGFLEHGKQVHG 261
                  R G L++A  L              ++LSAC   G LE GK+V G
Sbjct: 419 CMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGG 470


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 164/567 (28%), Positives = 283/567 (49%), Gaps = 78/567 (13%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y +   P +A  +FD+M  RN  SWN ++ G++  G   ++ ++F+ MP++N  
Sbjct: 133 NSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVV 192

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SW  ++ G+ K  + + E           N + +  +LG  L     + G  + A ++ +
Sbjct: 193 SWTAMVRGYVKEGMIS-EAETLFWQMPEKNVVSWTVMLGGLL-----QEGRIDEACRLFD 246

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
           MM E D    + +I GY   G++ +AR +FD     + V W +MI+GY+ N +   A  L
Sbjct: 247 MMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKL 306

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
           F  M                                          + +  +A+L  Y+ 
Sbjct: 307 FEVMPEK---------------------------------------NEVSWTAMLKGYTN 327

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
            G   +A +LF+ + +   +  N MI  +   G +  A+ +F  M  K   +W++MI   
Sbjct: 328 CGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVY 387

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
            + G  ++AL+LF  M +  +R +  SL SV+S CA +++L+ G ++ A++     D D 
Sbjct: 388 ERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDV 447

Query: 405 IISTSLVDFYCKCG---------------------------------YDALALFNEMRNT 431
            +++ L+  Y KCG                                  +AL +F++M  +
Sbjct: 448 YVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFS 507

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
           G+ P  +TF  +LSAC + G VK+G + F++M+ +Y ++ +IEHY+CMVDL  RAG LNE
Sbjct: 508 GIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNE 567

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551
           A++LIE+MP EAD  +W ++L  C  H    L    A++++ L+P+NA  +I LS+I+A+
Sbjct: 568 AMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYAS 627

Query: 552 SGEWEKSSLIRDIMREKHVGKLPGCSW 578
            G W+  + +R  MR++ V K PGCSW
Sbjct: 628 QGRWDDVAELRRNMRDRRVSKYPGCSW 654



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 143/327 (43%), Gaps = 49/327 (14%)

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
           +I  ++L+  YS+ G    A  +F E++  + I  N+++  Y    R ++A+++F  M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           ++ ISWN ++ G   NG   EA ++F  M + ++     S  +++        +   E +
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERNV----VSWTAMVRGYVKEGMISEAETL 213

Query: 392 FAR----------VTIIGL-----------------DSDQIISTSLVDFYCKCG--YDAL 422
           F +          V + GL                 + D +  T+++  YC+ G   +A 
Sbjct: 214 FWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEAR 273

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LF+EM     +  ++++T +++       V   +K F+ M  +  +      ++ M+  
Sbjct: 274 MLFDEM----PRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-----WTAMLKG 324

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH-GDKGLGRKVAERMIELDPENACA 541
           +   G L+EA  L   MP ++ V   + IL  C    G+    R+V ++M E D     A
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVACNAMIL--CFGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 542 YIQLSSIFATSG-EWEKSSLIRDIMRE 567
            I+   ++   G E +   L R + RE
Sbjct: 383 MIK---VYERKGLELDALELFRMMQRE 406



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 25/187 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C    ++  G+++H   ++    +  + +A+ LL MY++CGN   A  +FD  
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQ-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRF 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------LAAL 121
             ++   WN++I G+ + G   ++L++F+          +M  SG    D      L+A 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFH----------DMHFSGIMPDDVTFVGVLSAC 523

Query: 122 EYGKQIHSHI-LVNGLDFDSVLGSS------LVNLYGKCGDFNSANQVLNMMK-EPDDFC 173
            Y   +   + + N ++    +         +V+L G+ G  N A  ++  M  E D   
Sbjct: 524 SYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAII 583

Query: 174 LSALISG 180
             AL+  
Sbjct: 584 WGALLGA 590


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 172/610 (28%), Positives = 292/610 (47%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL +C +   +  G QLH +  K GI +S   +   LL +Y++CG+   AL++F+  
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGI-SSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
            R N   WN M+  F ++    KS +LF  M     + N F++  ++          ++ 
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTR--EIDL 363

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIHS  +  G + D  +   L+++Y K                               
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKY------------------------------ 393

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G +  ARRV +   +   V W SMI+GY+ +    +AL  F +M++ G+  D   LAS 
Sbjct: 394 -GWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASA 452

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +S C+ +  +  G Q+H              A   +  YS                  D 
Sbjct: 453 ISGCAGINAMRQGLQIH--------------ARIYVSGYSG-----------------DV 481

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
            + N ++ +Y+ CGRI +A   F  M  K  I+ N ++ G +Q+G   EAL +F  M++ 
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQS 541

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            ++ + F+  S +SA AN++ ++ G+Q+ ARV   G   +  +  +L+  Y KCG     
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF++M+  G+KP  +TF  +L+AC H 
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG  +F +M  +Y I P  +HY+C++D+F RAG L+ A   IE+MP  AD  +W +
Sbjct: 662 GLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRT 721

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +G   A+ ++EL+P ++ +Y+ LS+ +A + +W     +R +MR++ V
Sbjct: 722 LLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGV 781

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 782 RKEPGRSWIE 791



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 145/552 (26%), Positives = 243/552 (44%), Gaps = 103/552 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L SC        G+ +H    K G   S + + N ++ +Y+RCG+   A  +F +M
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFC-SEIFVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-MLISGF--AKADLAALEYG 124
           P R+  ++N +I G  + GH E +L++F  M Q +  S + + IS    A A L  L+ G
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEM-QFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
            Q+HS++   G+  D ++  SL++LY KCGD                   +AL+      
Sbjct: 264 TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVE-----------------TALV------ 300

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                   +F+ +  T+ V+WN M+  +   N+  ++  LF +M+  G+  +  T   +L
Sbjct: 301 --------IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCIL 352

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
             C+    ++ G+Q+H  + K G   D+ V+  L+D YSK G    A ++   LK     
Sbjct: 353 RTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK----- 407

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                                      K ++SW SMI G  Q+    +AL  F  M K  
Sbjct: 408 --------------------------EKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           +  D   LAS IS CA I+++  G Q+ AR+ + G   D  I  +LV+ Y +CG      
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +AL +F  M  +GVK  + TF + LSA  +  
Sbjct: 502 SSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLA 561

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            +K+G++    +    H   E E  + ++ L+ + G   +A     +M    +V  W++I
Sbjct: 562 EIKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS-WNTI 619

Query: 512 LRGCVAHGDKGL 523
           +  C  HG +GL
Sbjct: 620 ITSCSQHG-RGL 630



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 223/518 (43%), Gaps = 103/518 (19%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            V  ++H   + +G L     + N L+ +Y + G    A  +F+E+  R+  SW AM+ G
Sbjct: 59  QVVPEIHAKAVTRG-LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 82  FMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           + + G  E++L L+  M +       +  + ++S   KA+L A   G+ IH+    +G  
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFA--QGRLIHAQGYKHGFC 175

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            +  +G++++ LY                                 CG    A RVF   
Sbjct: 176 SEIFVGNAVITLY-------------------------------LRCGSFRLAERVFCDM 204

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
               +V +N++ISG+        AL +F +M+ +G+  D  T++S+L+AC+SLG L+ G 
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           Q+H +  K G+  D I+  +LLD Y K                               CG
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVK-------------------------------CG 293

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            +E A  IF +    +++ WN M+V   Q     ++ +LFC M    +R ++F+   ++ 
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILR 353

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------ 419
            C     ++LGEQ+ +     G +SD  +S  L+D Y K G+                  
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 420 ---------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                          DALA F EM+  G+ P  I   + +S C     +++G +   A  
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARI 472

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +      ++  ++ +V+L+AR G + EA +  E+M  +
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELK 510



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 203/491 (41%), Gaps = 106/491 (21%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGK- 125
           M RR   S    + GF+      K L LF    +++     +    FA A  A    G+ 
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHG---GLGPLDFACALRACRGNGRR 57

Query: 126 -----QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
                +IH+  +  GL    ++G+ L++LY K G    A +V   +   D+    A++SG
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA                                N    EAL L+ +M R GV+     L
Sbjct: 118 YAQ-------------------------------NGLGEEALGLYRQMHRAGVVPTPYVL 146

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SVLS+C+       G+ +H    K G   ++ V +A++  Y + G    A ++F ++  
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            DT+  NT+I+ ++ CG  E A  IF  M    L              SP          
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL--------------SP---------- 242

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                  D  +++S+++ACA++  L+ G Q+ + +   G+ SD I+  SL+D Y KCG  
Sbjct: 243 -------DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDV 295

Query: 419 YDALALFN-------------------------------EMRNTGVKPTIITFTAILSAC 447
             AL +FN                               +M+  G++P   T+  IL  C
Sbjct: 296 ETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTC 355

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
                +  G++   ++  +   + ++     ++D++++ G L +A  ++E +  E DV  
Sbjct: 356 TCTREIDLGEQ-IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK-EKDVVS 413

Query: 508 WSSILRGCVAH 518
           W+S++ G V H
Sbjct: 414 WTSMIAGYVQH 424


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 182/685 (26%), Positives = 312/685 (45%), Gaps = 128/685 (18%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            +G+ L    +  G+L       N ++  Y++ G+ T A  LFD MP R+  SWN+M+ G
Sbjct: 108 RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTG 167

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------------------------ 117
           +        +  LF  MP++N  SW ++ISG+ + +                        
Sbjct: 168 YCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNF 227

Query: 118 ---------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK-CGDFNSANQVLNMMK 167
                    L  L+  + +    L  G + D V+G++++N+Y +     ++A +    M 
Sbjct: 228 ASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMI 287

Query: 168 EPDDF-------------------------------CLSALISGYANCGKMNDARRVFDR 196
           E +++                               C +ALI+G A CG+++DAR +F++
Sbjct: 288 ERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQ 347

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKM---------------------------- 228
             +   V WN++I+GY+ N    EA  LF KM                            
Sbjct: 348 IPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLL 407

Query: 229 ---RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
               R+G+L   S+L S+  ACS++  LE G QVH  A KVG   +    +AL+  Y K 
Sbjct: 408 QELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKC 467

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                A ++FS +   D +  N+ +        +++A++ F  M ++  +SW ++I   +
Sbjct: 468 RNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYA 527

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
                 EA+  F  M       +   L  ++  C ++ + ++G+Q+      +G+DS+ I
Sbjct: 528 HAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELI 587

Query: 406 ISTSLVDFYCKC--------------------------------GYDALALFNEMRNTGV 433
           ++ +L+  Y KC                                G +A+ ++  M + GV
Sbjct: 588 VANALISMYFKCGCADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGV 647

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
            P  +TF  +L+AC H GLV EG K+F +M   Y + P  EHY+CMVDL  R G +  A 
Sbjct: 648 LPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAE 707

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             I  MP E D  +WS++L  C  H +  +G++ AE++  ++P NA  Y+ LS+I+++ G
Sbjct: 708 QFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLG 767

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSW 578
            W + + +R IM+++ V K PGCSW
Sbjct: 768 MWGEVAEVRKIMKQQGVIKEPGCSW 792



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 152/589 (25%), Positives = 262/589 (44%), Gaps = 89/589 (15%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G   +A  +FD MPRR+  +WN+MI  +   G  + +  L++ +   N  +  +L+SG
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG 105

Query: 113 FAKADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
           + +        G+ + +  + +G L+ ++V  +++++ Y + GD   A ++ + M   D 
Sbjct: 106 YGR-------LGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
              +++++GY +  +M DAR +F++  + + V W  MISGY       +A  +F KM R 
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD- 290
           G+L D S  AS LSA   LG L+  + +   A K G   DV++ +A+L+ YS+     D 
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 291 ACKLFSELKVYDTILLNTMITVYS-------------------------------SCGRI 319
           A K F  +   +    +TMI   S                                CGRI
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRI 338

Query: 320 EDA-------------------------------KHIFRTMPNKSLISWNSMIVGLSQNG 348
           +DA                               K +F  MP ++ ISW  MI G +QNG
Sbjct: 339 DDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNG 398

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              EAL L   +++  +     SL S+  AC+NI +LE G QV +    +G   +     
Sbjct: 399 RSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACN 458

Query: 409 SLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
           +L+  Y KC     A  +F+ M    V   I+++ + L+A     L+ E +  FD M   
Sbjct: 459 ALITMYGKCRNMEYARQVFSRM----VTKDIVSWNSFLAALVQNDLLDEARNTFDNM--- 511

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV---GMWSSILRGCVAHGDKGL 523
             +  +   ++ ++  +A A   NEA+   + M  E ++    + + +L  C + G   +
Sbjct: 512 --LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKI 569

Query: 524 GRKVAERMIEL--DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           G+++    I+L  D E   A   +S  F        S  I D+M E+ +
Sbjct: 570 GQQIHTVAIKLGMDSELIVANALISMYFKCGC--ADSRRIFDLMEERDI 616



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 202/421 (47%), Gaps = 38/421 (9%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           SA I      G++ +AR VFD       + WNSMIS Y  N     A  L+  +      
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGG--- 94

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SALLDTYSKRGMPSDACK 293
            +  T A +LS    LG +   ++V       G+++   VA +A++  Y + G  + A +
Sbjct: 95  -NMRTGAILLSGYGRLGRVLEARRVFD-----GMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF  +   D    N+M+T Y    ++ DA+++F  MP ++L+SW  MI G  +  +  +A
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
            D+FC M++  L  D+ + AS +SA   + +L++ E +       G + D +I T++++ 
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNV 268

Query: 414 YCKCGY---DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
           Y +       A+  F  M    ++    T++ +++A  H G +       DA    Y  D
Sbjct: 269 YSRDTSVLDTAIKFFESM----IERNEYTWSTMIAALSHGGRI-------DAAIAVYERD 317

Query: 471 PEIEHYSCMVDL---FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
           P ++  +C   L    A+ G +++A  L EQ+P E  V  W++++ G + +G     +++
Sbjct: 318 P-VKSIACRTALITGLAQCGRIDDARILFEQIP-EPIVVSWNALITGYMQNGMVNEAKEL 375

Query: 528 AERMIELDP-ENACAYIQLSSIFATSGEWEKS-SLIRDIMREKHVGKLPGCSWADGIAFN 585
            ++M    P  N  ++  + + +A +G  E++  L++++ R    G LP  S    I F 
Sbjct: 376 FDKM----PFRNTISWAGMIAGYAQNGRSEEALGLLQELHRS---GMLPSLSSLTSIFFA 428

Query: 586 C 586
           C
Sbjct: 429 C 429



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL  C +  +  +G+Q+H   +K G ++S L +AN L+ MY +CG   D+  +FD M
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTVAIKLG-MDSELIVANALISMYFKCG-CADSRRIFDLM 611

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             R+ F+WN +I G+ + G   ++++++  M       N+ ++  L++  + A L   E 
Sbjct: 612 EERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVD-EG 670

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALI 178
            K   S     GL       + +V+L G+ GD   A Q + +M  EPD    SAL+
Sbjct: 671 WKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALL 726


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 184/610 (30%), Positives = 296/610 (48%), Gaps = 101/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              ++++C     I +G QLH H +K G  +  L   N L+ MY + G    A  +F  +
Sbjct: 184 FGSIIKACCIAGDIDLGGQLHGHVIKSG-YDHHLIAQNALISMYTKFGQIAHASDVFTMI 242

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF---AKADLAALEYG 124
             ++  SW +MI GF +LG++ ++L LF  M ++  +  N  I G    A   L   E+G
Sbjct: 243 STKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFG 302

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +QI       GL  +   G SL ++Y K G   SA                         
Sbjct: 303 RQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSA------------------------- 337

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                 +R F +      V WN++I+  ++N++  EA+  F +M   G++ D  T  ++L
Sbjct: 338 ------KRAFYQIESPDLVSWNAIIAA-LANSDVNEAIYFFCQMIHMGLMPDDITFLNLL 390

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC S   L  G Q+H +  K+G+  D + A                             
Sbjct: 391 CACGSPMTLNQGMQIHSYIIKMGL--DKVAA----------------------------- 419

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           + N+++T+Y+ C  + DA ++F+ +  N +L+SWN+++   SQ+  P EA  LF  M   
Sbjct: 420 VCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFS 479

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
           + + D  ++ +++  CA + SLE+G QV       GL  D  +S  L+D Y KCG     
Sbjct: 480 ENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHA 539

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF  MRN GV+P  +T+  +LSAC H 
Sbjct: 540 RYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHI 599

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG   ++ M+ +  I P  EH SCMVDL ARAGCL EA N I++  F+ D+ MW +
Sbjct: 600 GLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKT 659

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  HG+  +  + AE +++LDP N+ A + LS+I A++G W++ + +R++M++  V
Sbjct: 660 LLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASAGNWKEVARLRNLMKQMGV 719

Query: 571 GKLPGCSWAD 580
            K+PG SW +
Sbjct: 720 QKVPGQSWIE 729



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 202/459 (44%), Gaps = 74/459 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C    S+  GK++H H LK       L + N +L MY +CG+  DA   FD M  R
Sbjct: 86  LILACTNVRSLKYGKRIHDHILKSNC-QPDLVLQNHILNMYGKCGSLKDARKAFDTMQLR 144

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIH 128
           +  SW  MI G+ + G +  ++ ++  M +   F   +      KA   A  ++ G Q+H
Sbjct: 145 SVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLH 204

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            H++ +G D   +  ++L+++Y K G    A+ V  M+   D      LIS         
Sbjct: 205 GHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKD------LIS--------- 249

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSAC 247
                           W SMI+G+     + EAL LF  M R GV + +     SV SAC
Sbjct: 250 ----------------WASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSAC 293

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-MPSDACKLFSELKVYDTILL 306
            SL   E G+Q+ G   K G+  +V    +L D Y+K G +PS                 
Sbjct: 294 RSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPS----------------- 336

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                          AK  F  + +  L+SWN++I  L+ N    EA+  FC M  + L 
Sbjct: 337 ---------------AKRAFYQIESPDLVSWNAIIAALA-NSDVNEAIYFFCQMIHMGLM 380

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALAL 424
            D  +  +++ AC +  +L  G Q+ + +  +GLD    +  SL+  Y KC   +DA  +
Sbjct: 381 PDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNV 440

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
           F ++   G    ++++ AILSAC       E  + F  M
Sbjct: 441 FKDISENG---NLVSWNAILSACSQHKQPGEAFRLFKLM 476



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 127/521 (24%), Positives = 216/521 (41%), Gaps = 107/521 (20%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-----SWNMLISGFAKADLAALEYGKQI 127
            S N+ I    K  H  ++L  FN   + +       ++  LI   A  ++ +L+YGK+I
Sbjct: 45  LSTNSYINLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLI--LACTNVRSLKYGKRI 102

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H HIL +    D VL + ++N+YGK                               CG +
Sbjct: 103 HDHILKSNCQPDLVLQNHILNMYGK-------------------------------CGSL 131

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
            DAR+ FD     S V W  MISGY  N ++ +A++++ +M R+G   D  T  S++ AC
Sbjct: 132 KDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKAC 191

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
              G ++ G Q+HGH  K G    +I  +AL+  Y+K G  + A  +F+ +   D I   
Sbjct: 192 CIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWA 251

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           +MIT ++  G   +A ++FR M  + +   N  I G                        
Sbjct: 252 SMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFG------------------------ 287

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------- 419
                 SV SAC ++   E G Q+       GL  +     SL D Y K G+        
Sbjct: 288 ------SVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAF 341

Query: 420 ------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +A+  F +M + G+ P  ITF  +L AC     + +
Sbjct: 342 YQIESPDLVSWNAIIAALANSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQ 401

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G +   +   +  +D      + ++ ++ +   L++A N+ + +    ++  W++IL  C
Sbjct: 402 GMQ-IHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSAC 460

Query: 516 VAHGDKGLGRKVAERMI--ELDPENACAYIQLSSIFATSGE 554
             H   G   ++ + M+  E  P+N    I +++I  T  E
Sbjct: 461 SQHKQPGEAFRLFKLMLFSENKPDN----ITITTILGTCAE 497


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 182/685 (26%), Positives = 312/685 (45%), Gaps = 128/685 (18%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            +G+ L    +  G+L       N ++  Y++ G+ T A  LFD MP R+  SWN+M+ G
Sbjct: 108 RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTG 167

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------------------------ 117
           +        +  LF  MP++N  SW ++ISG+ + +                        
Sbjct: 168 YCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNF 227

Query: 118 ---------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK-CGDFNSANQVLNMMK 167
                    L  L+  + +    L  G + D V+G++++N+Y +     ++A +    M 
Sbjct: 228 ASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMI 287

Query: 168 EPDDF-------------------------------CLSALISGYANCGKMNDARRVFDR 196
           E +++                               C +ALI+G A CG+++DAR +F++
Sbjct: 288 ERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQ 347

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKM---------------------------- 228
             +   V WN++I+GY+ N    EA  LF KM                            
Sbjct: 348 IPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLL 407

Query: 229 ---RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
               R+G+L   S+L S+  ACS++  LE G QVH  A KVG   +    +AL+  Y K 
Sbjct: 408 QELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKC 467

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                A ++FS +   D +  N+ +        +++A++ F  M ++  +SW ++I   +
Sbjct: 468 RNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYA 527

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
                 EA+  F  M       +   L  ++  C ++ + ++G+Q+      +G+DS+ I
Sbjct: 528 HAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELI 587

Query: 406 ISTSLVDFYCKC--------------------------------GYDALALFNEMRNTGV 433
           ++ +L+  Y KC                                G +A+ ++  M + GV
Sbjct: 588 VANALISMYFKCGCADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGV 647

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
            P  +TF  +L+AC H GLV EG K+F +M   Y + P  EHY+CMVDL  R G +  A 
Sbjct: 648 LPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAE 707

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             I  MP E D  +WS++L  C  H +  +G++ AE++  ++P NA  Y+ LS+I+++ G
Sbjct: 708 QFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLG 767

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSW 578
            W + + +R IM+++ V K PGCSW
Sbjct: 768 MWGEVAEVRKIMKQQGVIKEPGCSW 792



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 152/589 (25%), Positives = 262/589 (44%), Gaps = 89/589 (15%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G   +A  +FD MPRR+  +WN+MI  +   G  + +  L++ +   N  +  +L+SG
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG 105

Query: 113 FAKADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
           + +        G+ + +  + +G L+ ++V  +++++ Y + GD   A ++ + M   D 
Sbjct: 106 YGR-------LGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
              +++++GY +  +M DAR +F++  + + V W  MISGY       +A  +F KM R 
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD- 290
           G+L D S  AS LSA   LG L+  + +   A K G   DV++ +A+L+ YS+     D 
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 291 ACKLFSELKVYDTILLNTMITVYS-------------------------------SCGRI 319
           A K F  +   +    +TMI   S                                CGRI
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRI 338

Query: 320 EDA-------------------------------KHIFRTMPNKSLISWNSMIVGLSQNG 348
           +DA                               K +F  MP ++ ISW  MI G +QNG
Sbjct: 339 DDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNG 398

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              EAL L   +++  +     SL S+  AC+NI +LE G QV +    +G   +     
Sbjct: 399 RSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACN 458

Query: 409 SLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
           +L+  Y KC     A  +F+ M    V   I+++ + L+A     L+ E +  FD M   
Sbjct: 459 ALITMYGKCRNMEYARQVFSRM----VTKDIVSWNSFLAALVQNDLLDEARNTFDNM--- 511

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV---GMWSSILRGCVAHGDKGL 523
             +  +   ++ ++  +A A   NEA+   + M  E ++    + + +L  C + G   +
Sbjct: 512 --LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKI 569

Query: 524 GRKVAERMIEL--DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           G+++    I+L  D E   A   +S  F        S  I D+M E+ +
Sbjct: 570 GQQIHTVAIKLGMDSELIVANALISMYFKCGC--ADSRRIFDLMEERDI 616



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 202/421 (47%), Gaps = 38/421 (9%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           SA I      G++ +AR VFD       + WNSMIS Y  N     A  L+  +      
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGG--- 94

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SALLDTYSKRGMPSDACK 293
            +  T A +LS    LG +   ++V       G+++   VA +A++  Y + G  + A +
Sbjct: 95  -NMRTGAILLSGYGRLGRVLEARRVFD-----GMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF  +   D    N+M+T Y    ++ DA+++F  MP ++L+SW  MI G  +  +  +A
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
            D+FC M++  L  D+ + AS +SA   + +L++ E +       G + D +I T++++ 
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNV 268

Query: 414 YCKCGY---DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
           Y +       A+  F  M    ++    T++ +++A  H G +       DA    Y  D
Sbjct: 269 YSRDTSVLDTAIKFFESM----IERNEYTWSTMIAALSHGGRI-------DAAIAVYERD 317

Query: 471 PEIEHYSCMVDL---FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
           P ++  +C   L    A+ G +++A  L EQ+P E  V  W++++ G + +G     +++
Sbjct: 318 P-VKSIACRTALITGLAQCGRIDDARILFEQIP-EPIVVSWNALITGYMQNGMVNEAKEL 375

Query: 528 AERMIELDP-ENACAYIQLSSIFATSGEWEKS-SLIRDIMREKHVGKLPGCSWADGIAFN 585
            ++M    P  N  ++  + + +A +G  E++  L++++ R    G LP  S    I F 
Sbjct: 376 FDKM----PFRNTISWAGMIAGYAQNGRSEEALGLLQELHRS---GMLPSLSSLTSIFFA 428

Query: 586 C 586
           C
Sbjct: 429 C 429



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL  C +  +  +G+Q+H   +K G ++S L +AN L+ MY +CG   D+  +FD M
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTVAIKLG-MDSELIVANALISMYFKCG-CADSRRIFDLM 611

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             R+ F+WN +I G+ + G   ++++++  M       N+ ++  L++  + A L   E 
Sbjct: 612 EERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVD-EG 670

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALI 178
            K   S     GL       + +V+L G+ GD   A Q + +M  EPD    SAL+
Sbjct: 671 WKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALL 726


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 197/647 (30%), Positives = 296/647 (45%), Gaps = 140/647 (21%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           L + + L+++Y   G   DA  +FDE+P+R+   WN M+ G++K G    ++  F  M  
Sbjct: 180 LFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRT 239

Query: 101 K----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
                N  ++  ++S  A      L  G Q+H  ++ +G +FD  + ++LV +Y K    
Sbjct: 240 SYSMVNSVTYTCILSICATRGKFCL--GTQVHGLVIGSGFEFDPQVANTLVAMYSK---- 293

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
                                      CG + DAR++F+    T +V WN +I+GY+ N 
Sbjct: 294 ---------------------------CGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNG 326

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC----------KV 266
              EA  LF+ M   GV  D+ T AS L +    G L H K+VH +            K 
Sbjct: 327 FTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKS 386

Query: 267 GVID---------------------DVIVASALLDTYSKRGMPSDACKLFSEL------- 298
            +ID                     DV V +A++  Y   G+  DA   F  L       
Sbjct: 387 ALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVP 446

Query: 299 -------------------------------KVYDTILLNTMIT-VYSSCGRIEDAKHIF 326
                                          ++ + + + + IT +Y+ CGR++ A   F
Sbjct: 447 NSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFF 506

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
           R M     I WNSMI   SQNG P  A+DLF  M     + D  SL+S +S+ AN+ +L 
Sbjct: 507 RRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALY 566

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA----------------------- 423
            G+++   V      SD  ++++L+D Y KCG  ALA                       
Sbjct: 567 YGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYG 626

Query: 424 ----------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
                     LF+EM   GV P  +TF  I+SAC H GLV EG  +F  M  +Y I   +
Sbjct: 627 NHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARM 686

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           EHY+CMVDL+ RAG L+EA + I+ MPF  D G+W ++L  C  HG+  L +  +  ++E
Sbjct: 687 EHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLE 746

Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           LDP+N+  Y+ LS++ A +GEW     +R +M+EK V K+PG SW D
Sbjct: 747 LDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWID 793



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 132/538 (24%), Positives = 239/538 (44%), Gaps = 58/538 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L ++C+    +   +Q+H   +  G ++    +++R+L +Y+ CG  +D   LF  +
Sbjct: 47  LESLFRACSDASVVQQARQVHTQIIVGG-MSDVCALSSRVLGLYVLCGRISDGGNLFFGL 105

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
              N   WN MI G   LG                   W          D A L Y K +
Sbjct: 106 ELCNALPWNWMIRGLYMLG-------------------W---------FDFALLFYFKML 137

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA-------NQVLNMMKEPDDFCLSALISG 180
            S++  +   F  V+ +        CG  N+        N   ++    D F  SALI  
Sbjct: 138 GSNVSPDKYTFPYVIKA--------CGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKL 189

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA+ G + DARRVFD      +++WN M+ GY+ + +   A+  F  MR +  + ++ T 
Sbjct: 190 YADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTY 249

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
             +LS C++ G    G QVHG     G   D  VA+ L+  YSK G   DA KLF+ +  
Sbjct: 250 TCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQ 309

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDL 356
            DT+  N +I  Y   G  ++A  +F  M +  +    +++ S +  + ++GS     ++
Sbjct: 310 TDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEV 369

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
              + +  +  D +  +++I        +E+  ++F + T++    D  + T+++  Y  
Sbjct: 370 HSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLV----DVAVCTAMISGYVL 425

Query: 417 CGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEI 473
            G   DA+  F  +   G+ P  +T  ++L AC     +K G++   D +K Q  ++  +
Sbjct: 426 HGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQ--LENIV 483

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
              S + D++A+ G L+ A     +M  E D   W+S++     +G   +   +  +M
Sbjct: 484 NVGSAITDMYAKCGRLDLAYEFFRRMS-ETDSICWNSMISSFSQNGKPEMAVDLFRQM 540



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 140/321 (43%), Gaps = 46/321 (14%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK+LH   LKK + N  + + + +  MY +CG    A   F  M   +   WN+MI  F 
Sbjct: 467 GKELHCDILKKQLEN-IVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFS 525

Query: 84  KLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
           + G  E ++ LF  M     K D   ++  +  + A+L AL YGK++H +++ N    D+
Sbjct: 526 QNGKPEMAVDLFRQMGMSGAKFDSV-SLSSALSSAANLPALYYGKEMHGYVIRNAFSSDT 584

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            + S+L+++Y KCG    A  V N+M   ++                             
Sbjct: 585 FVASALIDMYSKCGKLALARCVFNLMAGKNE----------------------------- 615

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             V WNS+I+ Y ++    E L LFH+M R GV  D  T   ++SAC   G +  G+ +H
Sbjct: 616 --VSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLV--GEGIH 671

Query: 261 GHAC---KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-VYDTILLNTMITVYSSC 316
              C   + G+   +   + ++D Y + G   +A      +    D  +  T++      
Sbjct: 672 YFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLH 731

Query: 317 GRIEDAK----HIFRTMPNKS 333
           G +E AK    H+    P  S
Sbjct: 732 GNVELAKLASRHLLELDPKNS 752



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 13/159 (8%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           +++ GK++H + ++    + T  +A+ L+ MY +CG    A  +F+ M  +N  SWN++I
Sbjct: 564 ALYYGKEMHGYVIRNAFSSDTF-VASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSII 622

Query: 80  EGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHS-HILVN 134
             +   G   + L LF+ M       +  ++ ++IS    A L     G+ IH  H +  
Sbjct: 623 AAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLV----GEGIHYFHCMTR 678

Query: 135 GLDFDSVLG--SSLVNLYGKCGDFNSA-NQVLNMMKEPD 170
                + +   + +V+LYG+ G  + A + + +M   PD
Sbjct: 679 EYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPD 717


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 164/567 (28%), Positives = 283/567 (49%), Gaps = 78/567 (13%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y +   P +A  +FD+M  RN  SWN ++ G++  G   ++ ++F+ MP++N  
Sbjct: 133 NSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVV 192

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SW  ++ G+ K  + + E           N + +  +LG  L     + G  + A ++ +
Sbjct: 193 SWTAMVRGYVKEGMIS-EAETLFWQMPEKNVVSWTVMLGGLL-----QEGRIDEACRLFD 246

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
           MM E D    + +I GY   G++ +AR +FD     + V W +MI+GY+ N +   A  L
Sbjct: 247 MMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKL 306

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
           F  M                                          + +  +A+L  Y+ 
Sbjct: 307 FEVMPEK---------------------------------------NEVSWTAMLKGYTN 327

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
            G   +A +LF+ + +   +  N MI  +   G +  A+ +F  M  K   +W++MI   
Sbjct: 328 CGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVY 387

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
            + G  ++AL+LF  M +  +R +  SL SV+S CA +++L+ G ++ A++     D D 
Sbjct: 388 ERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDV 447

Query: 405 IISTSLVDFYCKCG---------------------------------YDALALFNEMRNT 431
            +++ L+  Y KCG                                  +AL +F++M  +
Sbjct: 448 YVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFS 507

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
           G+ P  +TF  +LSAC + G VK+G + F++M+ +Y ++ +IEHY+CMVDL  RAG LNE
Sbjct: 508 GIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNE 567

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551
           A++LIE+MP EAD  +W ++L  C  H    L    A++++ L+P+NA  +I LS+I+A+
Sbjct: 568 AMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYAS 627

Query: 552 SGEWEKSSLIRDIMREKHVGKLPGCSW 578
            G W+  + +R  MR++ V K PGCSW
Sbjct: 628 QGRWDDVAELRRNMRDRRVSKYPGCSW 654



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 143/327 (43%), Gaps = 49/327 (14%)

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
           +I  ++L+  YS+ G    A  +F E++  + I  N+++  Y    R ++A+++F  M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           ++ ISWN ++ G   NG   EA ++F  M + ++     S  +++        +   E +
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERNV----VSWTAMVRGYVKEGMISEAETL 213

Query: 392 FAR----------VTIIGL-----------------DSDQIISTSLVDFYCKCG--YDAL 422
           F +          V + GL                 + D +  T+++  YC+ G   +A 
Sbjct: 214 FWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEAR 273

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LF+EM     +  ++++T +++       V   +K F+ M  +  +      ++ M+  
Sbjct: 274 MLFDEM----PRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-----WTAMLKG 324

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH-GDKGLGRKVAERMIELDPENACA 541
           +   G L+EA  L   MP ++ V   + IL  C    G+    R+V ++M E D     A
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVACNAMIL--CFGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 542 YIQLSSIFATSG-EWEKSSLIRDIMRE 567
            I+   ++   G E +   L R + RE
Sbjct: 383 MIK---VYERKGLELDALELFRMMQRE 406



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 25/187 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C    ++  G+++H   ++    +  + +A+ LL MY++CGN   A  +FD  
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQ-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRF 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------LAAL 121
             ++   WN++I G+ + G   ++L++F+          +M  SG    D      L+A 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFH----------DMHFSGIMPDDVTFVGVLSAC 523

Query: 122 EYGKQIHSHI-LVNGLDFDSVLGSS------LVNLYGKCGDFNSANQVLNMMK-EPDDFC 173
            Y   +   + + N ++    +         +V+L G+ G  N A  ++  M  E D   
Sbjct: 524 SYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAII 583

Query: 174 LSALISG 180
             AL+  
Sbjct: 584 WGALLGA 590


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 180/580 (31%), Positives = 287/580 (49%), Gaps = 76/580 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C+T   +H GK +H + +K   L + + +A  L+ MY +C    +A  LF  +
Sbjct: 137 LGSVLRACSTLSLLHTGKMIHCYAIKIQ-LEANIFVATGLVDMYSKCKCLLEAEYLFFSL 195

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALE 122
           P R+N   W AM+ G+ + G   K++Q F  M     + N F++  +++  A   ++A  
Sbjct: 196 PDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILT--ACTSISAYA 253

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           +G+Q+H  I+ +G                                 P+ +  SAL+  YA
Sbjct: 254 FGRQVHGCIIWSGFG-------------------------------PNVYVQSALVDMYA 282

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            CG +  AR + D       V WNSMI G +++    EAL+LFHKM    +  D  T  S
Sbjct: 283 KCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPS 342

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL + +S   L+ G+ VH    K G                      DACK  S      
Sbjct: 343 VLKSLASCKNLKIGESVHSLTIKTGF---------------------DACKTVS------ 375

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
               N ++ +Y+  G +  A  +F  + +K +ISW S++ G   NG   +AL LFC+M  
Sbjct: 376 ----NALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRT 431

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YD 420
             + +D+F +A V SACA ++ +E G QV A        S      SL+  Y KCG   D
Sbjct: 432 ARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLED 491

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           A+ + + M    V    I++TAI+      GLV+ GQ +F++M+  Y I P  + Y+CM+
Sbjct: 492 AIRVXDSMETRNV----ISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDRYACMI 547

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540
           DL  RAG +NEA +L+ +M  E D  +W S+L  C  HG+  LG +  + +I+L+P N+ 
Sbjct: 548 DLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSL 607

Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            Y+ LS++F+ +G WE ++ IR  M+   + + PG SW +
Sbjct: 608 PYVLLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSWIE 647



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 138/526 (26%), Positives = 234/526 (44%), Gaps = 73/526 (13%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N+LL    + G   +A  LFD+MP R+ ++WN MI  +  LG+  ++ +LFN  P  N 
Sbjct: 40  SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNS 99

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV- 162
            +W+ L+SG+ K        G +  S +  +G         S++         ++   + 
Sbjct: 100 ITWSSLVSGYCKNGCEV--EGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIH 157

Query: 163 ---LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNED 218
              + +  E + F  + L+  Y+ C  + +A  +F    D  + V W +M++GY  N E 
Sbjct: 158 CYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGES 217

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            +A+  F +MR  G+  +  T  S+L+AC+S+     G+QVHG     G   +V V SAL
Sbjct: 218 LKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSAL 277

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +D Y+K                               CG +  A+ I  TM    ++ WN
Sbjct: 278 VDMYAK-------------------------------CGDLASARMILDTMEIDDVVCWN 306

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           SMIVG   +G   EAL LF  M+  D+R+D F+  SV+ + A+  +L++GE V +     
Sbjct: 307 SMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKT 366

Query: 399 GLDSDQIISTSLVDFYCK-----CGYD----------------------------ALALF 425
           G D+ + +S +LVD Y K     C  D                            AL LF
Sbjct: 367 GFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLF 426

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            +MR   V         + SAC    +++ G++   A   +      +   + ++ ++A+
Sbjct: 427 CDMRTARVDLDQFVVACVFSACAELTVIEFGRQ-VHANFIKSSAGSLLSAENSLITMYAK 485

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            GCL +A+ + + M    +V  W++I+ G   +G    G+   E M
Sbjct: 486 CGCLEDAIRVXDSMETR-NVISWTAIIVGYAQNGLVETGQSYFESM 530



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 178/385 (46%), Gaps = 64/385 (16%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D RID      +L+S  +  ++ +G+ +H   +K G  ++   ++N L+ MY + GN + 
Sbjct: 332 DIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTG-FDACKTVSNALVDMYAKQGNLSC 390

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGF-AKAD 117
           AL +F+++  ++  SW +++ G++  G  EK+LQLF ++   + D    ++   F A A+
Sbjct: 391 ALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAE 450

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L  +E+G+Q+H++ + +         +SL+ +Y KCG    A +V + M+  +    +A+
Sbjct: 451 LTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSMETRNVISWTAI 510

Query: 178 ISGYANCGKMNDARRVFDRTTDT-----SSVMWNSMI-----SGYISNNEDTEALLLFHK 227
           I GYA  G +   +  F+          +S  +  MI     +G I+  E        H 
Sbjct: 511 IVGYAQNGLVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKINEAE--------HL 562

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           + R  V  DA+   S+LSAC   G LE G++   +  K+                     
Sbjct: 563 LNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLE-------------------- 602

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM--------PNKSLISWNS 339
           PS++            +LL+ M +V    GR EDA HI R M        P  S I   S
Sbjct: 603 PSNSLPY---------VLLSNMFSV---AGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKS 650

Query: 340 MI-VGLSQNGSPIEALDLFCNMNKL 363
            +   +S++ S   A +++  ++++
Sbjct: 651 QVHTFISEDRSHPLAAEIYSKIDEM 675


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 175/599 (29%), Positives = 304/599 (50%), Gaps = 68/599 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  +++ G+   A  LFD MP RN  S+  M++  MK G   ++++L+   P  +   +
Sbjct: 157 MVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 216

Query: 107 NMLISGFAKADL---AALEYGKQIHSHILVNGLDFD----------------SVLGS--- 144
              ISGF + +L   A   + K +   +  NG+ F                 S++GS   
Sbjct: 217 TATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIK 276

Query: 145 ------------SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
                       SL+ LY + GD  +A +V + M   D    +AL+  Y+  G ++ ARR
Sbjct: 277 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARR 336

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           V D   + + V W ++I+ +       EA+ L+ +M  +G   + S  +SVLSAC++L  
Sbjct: 337 VLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLED 396

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L  G ++H  + K+G   +V V+S+L+D Y K     DA  +F  L   + +  N++ + 
Sbjct: 397 LRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASG 456

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           YS  G++ +A ++F+ MP ++L SWN++I G +QN   ++AL  F  M        + + 
Sbjct: 457 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITF 516

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
           +SV+ ACAN+ SL  G+   A+   +G++    I T+L D Y K G              
Sbjct: 517 SSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPE 576

Query: 419 -------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                               +++ L  +M  TG+ P   TF A+L AC H GLV++   +
Sbjct: 577 RNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHY 636

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           F+ M+  + I P+ +HY+CMVD+ ARAG L EA  L+ + P +++   W+++L  C  + 
Sbjct: 637 FEKMQ-AWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYK 695

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           ++ +G + A+R+ EL  +N   Y+ LS+++A+ G W+ ++ IR +M+   + K  GCSW
Sbjct: 696 NEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSW 754



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 159/399 (39%), Gaps = 102/399 (25%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C T   +  G ++H   LK G  ++ + +++ L+ MY +C    DA  +F
Sbjct: 381 ISCFSSVLSACATLEDLRGGARIHARSLKMGS-STNVFVSSSLIDMYCKCKKCRDAQTIF 439

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------- 115
           D +P +N   WN++  G+   G   +++ LF  MP +N  SWN +ISG+A+         
Sbjct: 440 DTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALR 499

Query: 116 ------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
                                   A+L +L  GK  H+  +  G++    +G++L ++Y 
Sbjct: 500 SFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYA 559

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           K GD  S+ ++   M E +D                               V W +MI G
Sbjct: 560 KSGDLQSSKRMFYQMPERND-------------------------------VTWTAMIQG 588

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG--------------K 257
              N    E++LL   M   G+  +  T  ++L ACS  G +E                K
Sbjct: 589 LAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPK 648

Query: 258 QVHGHACKVGVI---DDVIVASALL-------------------DTYSKRGMPSDACKLF 295
           + H + C V V+     +I A ALL                   +TY    +   A K  
Sbjct: 649 EKH-YTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRL 707

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            EL   +T     +  +Y+SCGR +DA  I   M   +L
Sbjct: 708 HELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTL 746



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 169/419 (40%), Gaps = 68/419 (16%)

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE---LKVYDTILLNTMITVYSS 315
           +H HA + GV  D  VAS LL TY+     ++  + F +            + M+  +  
Sbjct: 104 LHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHEHVK 163

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL------------------- 356
            G I  A+ +F  MP ++++S+ +M+  L + G   EA++L                   
Sbjct: 164 AGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGF 223

Query: 357 ------------FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG----- 399
                       F  M    +R +  +   +I AC       L       ++I+G     
Sbjct: 224 VRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLA------MSIVGSAIKS 277

Query: 400 --LDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
              +S   +  SL+  Y + G  A A  +F+EM    VK  ++++TA+L      G +  
Sbjct: 278 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEM---DVK-DVVSWTALLDVYSESGDLDG 333

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSIL 512
            ++  DAM  +  +      +  ++    + G   EAV L  QM  +    ++  +SS+L
Sbjct: 334 ARRVLDAMPERNEVS-----WGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVL 388

Query: 513 RGCVAHGDKGLGRKVAERMIEL-DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
             C    D   G ++  R +++    N      L  ++    +   +  I D + EK++ 
Sbjct: 389 SACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNI- 447

Query: 572 KLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQHQSADFCDYIHGFDQARLPLSSKRSF 630
            +   S A G ++N   ++ M+L    F ++     A +   I G+ Q R  + + RSF
Sbjct: 448 -VCWNSLASGYSYNGKMVEAMYL----FKKMPARNLASWNTIISGYAQNRQFVDALRSF 501


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 189/623 (30%), Positives = 307/623 (49%), Gaps = 79/623 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    S+  G  +H      G L S + I N ++ MY RCG   DA  +FDE+  R
Sbjct: 133 VLKACGEIPSLRHGASVHAIVCANG-LGSNVFICNSIVAMYGRCGALDDAHQMFDEVLER 191

Query: 71  ---NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-------AKADLAA 120
              +  SWN+++  +++ G    +L++   M   N +S  +            A A + A
Sbjct: 192 KIEDIVSWNSILAAYVQGGQSRTALRIAFRM--GNHYSLKLRPDAITLVNILPACASVFA 249

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L++GKQ+H   + NGL  D  +G++LV++Y KC   N AN+V   +K+ D    +A+++G
Sbjct: 250 LQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTG 309

Query: 181 YANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           Y+  G  + A  +F    +       + W+++I+GY       EAL +F +M+  G+  +
Sbjct: 310 YSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPN 369

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             TLAS+LS C+S+G L +GKQ H +     VI +++                    L  
Sbjct: 370 VVTLASLLSGCASVGALLYGKQTHAY-----VIKNIL-------------------NLNW 405

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM--PNKSLISWNSMIVGLSQNGSPIEAL 354
             K  D ++LN +I +Y+ C     A+ IF ++   +K++++W  MI G +Q+G   +AL
Sbjct: 406 NDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDAL 465

Query: 355 DLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLV 411
            LF  +   K  L+ + F+L+  + ACA +  L LG Q+ A       +S+ + +   L+
Sbjct: 466 KLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLI 525

Query: 412 DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
           D Y K G                                  +AL LF++M+  G     I
Sbjct: 526 DMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGI 585

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TF  +L AC H G+V +G  +F  M   + I P  EHY+CMVDL  RAG LNEA+ LI+ 
Sbjct: 586 TFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKN 645

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           M  E    +W ++L     H +  LG   A ++ EL  EN  +Y  LS+++A +  W+  
Sbjct: 646 MSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDV 705

Query: 559 SLIRDIMREKHVGKLPGCSWADG 581
           + IR +M+   + K PGCSW  G
Sbjct: 706 ARIRSLMKHTGIRKRPGCSWIQG 728



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 144/529 (27%), Positives = 255/529 (48%), Gaps = 94/529 (17%)

Query: 51  YMRCGNPTDALLLFDEM--PRRNCFSWNAMIEGFMKLGHKEKSL------QLFNVMPQKN 102
           Y+ CG   +A+ L   +       F WNA+I   +KLG  + +L      Q    +P   
Sbjct: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128

Query: 103 DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 162
            F + +   G    ++ +L +G  +H+ +  NGL  +  + +S+V +YG+CG  + A+Q+
Sbjct: 129 TFPFVLKACG----EIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQM 184

Query: 163 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 222
            + + E                      R++ D       V WNS+++ Y+   +   AL
Sbjct: 185 FDEVLE----------------------RKIED------IVSWNSILAAYVQGGQSRTAL 216

Query: 223 LLFHKMRRNGVLE---DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
            +  +M  +  L+   DA TL ++L AC+S+  L+HGKQVHG + + G++DDV V +AL+
Sbjct: 217 RIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALV 276

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----I 335
             Y+K    ++A K+F  +K  D +  N M+T YS  G  + A  +F+ M  + +    I
Sbjct: 277 SMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVI 336

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           +W+++I G +Q G   EALD+F  M    L  +  +LAS++S CA++ +L  G+Q  A V
Sbjct: 337 TWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYV 396

Query: 396 --TIIGL-----DSDQIISTSLVDFYCKC----------------------------GY- 419
              I+ L     + D ++   L+D Y KC                            GY 
Sbjct: 397 IKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYA 456

Query: 420 ------DALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                 DAL LF ++  + T +KP   T +  L AC   G ++ G++   A   +   + 
Sbjct: 457 QHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQ-LHAYALRNENES 515

Query: 472 EIEHY-SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           E+ +  +C++D+++++G ++ A  + + M    +V  W+S++ G   HG
Sbjct: 516 EVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHG 563



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 185/423 (43%), Gaps = 53/423 (12%)

Query: 129 SHILVNGLDFDSVLGSS-----LVNLYGKCGDF---NSANQVLNMMKEPDDFCLSALISG 180
           S IL+  + F S   +S     L++L  +C        A+Q + +    + F  S  +  
Sbjct: 11  SRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTEMF--SYAVGA 68

Query: 181 YANCGKMNDARRVFDRTTDTSSVM--WNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           Y  CG   +A  +  R   + S +  WN++I   +      + L  + +M+R G L D  
Sbjct: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T   VL AC  +  L HG  VH   C  G+  +V + ++++  Y + G   DA ++F E+
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                              +IED            ++SWNS++    Q G    AL +  
Sbjct: 189 LER----------------KIED------------IVSWNSILAAYVQGGQSRTALRIAF 220

Query: 359 NMN---KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
            M     L LR D  +L +++ ACA++ +L+ G+QV       GL  D  +  +LV  Y 
Sbjct: 221 RMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYA 280

Query: 416 KCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
           KC    +A  +F  ++    K  ++++ A+++     G        F  M+ +  I  ++
Sbjct: 281 KCSKMNEANKVFEGIK----KKDVVSWNAMVTGYSQIGSFDSALSLFKMMQ-EEDIKLDV 335

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAER 530
             +S ++  +A+ G   EA+++  QM     E +V   +S+L GC + G    G++    
Sbjct: 336 ITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAY 395

Query: 531 MIE 533
           +I+
Sbjct: 396 VIK 398


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 187/621 (30%), Positives = 306/621 (49%), Gaps = 68/621 (10%)

Query: 7   YLARLLQSCN-THHSIHVG-----KQLHLHFLKKG---ILNSTLPIANRLLQMYMRCGNP 57
           + +R  Q C+  H +  +G     + LH H+ KKG   ILNS    AN LL +Y++  N 
Sbjct: 28  FHSRSRQPCSFLHSTTSIGSPPSLRALHGHYFKKGSLQILNS----ANYLLTLYVKSSNL 83

Query: 58  TDALLLFDEMPRRNCFSWNAMIEGFMKL-GHKEKSLQLFNVMPQ----KNDFSWNMLISG 112
             A  LFDE+  +N  +W  +I GF +  G  E    LF  M       N ++ + ++  
Sbjct: 84  DHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKC 143

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
            ++ +   +++GK IH+ IL NG+  D VL +S+++LY KC +F  A     +M E D  
Sbjct: 144 CSREN--NIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVV 201

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
             + +I  Y   G +  +  +F    +   V WN++I G I    +  AL   + M  +G
Sbjct: 202 SWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHG 261

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
                 T +  L   SSL  +E G+Q+HG     G+  D  + S+L++ Y K G    A 
Sbjct: 262 TEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKAS 321

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
            +  ++ +      N  +T                  P   ++SW+SM+ G   NG   +
Sbjct: 322 TILKDVPLNFLRKGNFGVTCKE---------------PKARMVSWSSMVSGYVWNGKYED 366

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
            +  F +M    + +D  ++A++ISACAN   LE G+Q+ A +  IGL  D  + +SL+D
Sbjct: 367 GMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLID 426

Query: 413 FYCKCG---------------------------------YDALALFNEMRNTGVKPTIIT 439
            Y K G                                  +A++LF  M N G+ P  +T
Sbjct: 427 MYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVT 486

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           F  +L+AC H GL++EG ++F  MK  YHI+PE+EHY+ MV+L+ RAG L EA N I + 
Sbjct: 487 FVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFEN 546

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
                  +W S L  C  H +  +G+ V+E +++  P +  AYI LS++ +++ +W++++
Sbjct: 547 SISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAA 606

Query: 560 LIRDIMREKHVGKLPGCSWAD 580
           ++R +M ++ V K PG SW  
Sbjct: 607 IVRSLMYQRGVKKQPGQSWVQ 627


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 191/683 (27%), Positives = 328/683 (48%), Gaps = 146/683 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  +LQ C    S+  GK++       G +L+S L   ++L  MY  CG+  +A  +FD+
Sbjct: 97  LCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNL--GSKLALMYTNCGDLKEASRVFDQ 154

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALE 122
           +       WN ++    K G    S+ LF  M     + + ++++ +   F+   L ++ 
Sbjct: 155 VKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFS--SLRSVN 212

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+Q+H +IL +G    + +G+SLV  Y K       N                      
Sbjct: 213 GGEQLHGYILKSGFGERNSVGNSLVAFYLK-------NH--------------------- 244

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
              +++ AR+VFD  T+   + WNS+I+GY+SN    + L +F +M  +G+  D +T+ S
Sbjct: 245 ---RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVS 301

Query: 243 VLSACSSLGFLEHGKQVHG---HAC----------------KVGVIDD------------ 271
           V + C+    +  G+ VH     AC                K G +D             
Sbjct: 302 VFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRS 361

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKV------------------------------- 300
           V+  ++++  Y++ G+  +A KLF E++                                
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHE 421

Query: 301 --------YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
                   +D  + N ++ +Y+ CG + +A+ +F  M  K +ISWN++I G S+N    E
Sbjct: 422 WIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANE 481

Query: 353 ALDLFCNMNKLDLRM--DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
           AL LF N+  ++ R   D+ ++A V+ ACA++S+ + G ++   +   G  SD+ ++ SL
Sbjct: 482 ALSLF-NLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSL 540

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           VD Y KCG                                  +A+ALFN+MR  G++P  
Sbjct: 541 VDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDE 600

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           I+F ++L AC H GLV EG ++F+ M+ +  I+P +EHY+C+VD+ AR G L++A   IE
Sbjct: 601 ISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIE 660

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
            MP   D  +W ++L GC  H D  L  +VAE++ EL+PEN   Y+ +++I+A + +WE+
Sbjct: 661 NMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEE 720

Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
              +R  + ++ + K PGCSW +
Sbjct: 721 VKRLRKRIGQRGLRKNPGCSWIE 743


>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
 gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 830

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 189/644 (29%), Positives = 311/644 (48%), Gaps = 113/644 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L   + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 181 KACGALKWSRFGRGVHGYVVKSG-LEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNA 239

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++LF+ M ++      + +S    A A++  +E GKQ H+ 
Sbjct: 240 VAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAI 299

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNG++ D++LG+SL+N Y K G    A  V + M E D    + +ISGY   G + D 
Sbjct: 300 AIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVED- 358

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                         A+ +   MR   +  D  TLA+++SA +  
Sbjct: 359 ------------------------------AIYMCQLMRLEKLKYDCVTLATLMSAAART 388

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK+V  +  +     D+++AS ++D Y+K G   DA K+F      D IL NT++
Sbjct: 389 ENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLL 448

Query: 311 TVYSSC-----------------------------------GRIEDAKHIFRTM------ 329
             Y+                                     G++++AK +F  M      
Sbjct: 449 AAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGII 508

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  LISW +M+ G+ QNG   EA+     M +  LR + FS+   +SACA+++SL +G 
Sbjct: 509 PN--LISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGR 566

Query: 390 QVFARVTIIGLDSDQIIS--TSLVDFYCKCG----------------------------- 418
            +   + I  L    ++S  TSLVD Y KCG                             
Sbjct: 567 TIHGYI-IRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYAL 625

Query: 419 ----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                +A+AL+  +   G+KP  IT T +LSAC+H G + +  + F  +  +  + P +E
Sbjct: 626 YGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLE 685

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           HY  MVDL A AG   +A+ LIE+MPF+ D  M  S++  C       L   ++ +++E 
Sbjct: 686 HYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLES 745

Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +PEN+  Y+ +S+ +A  G W++   +R++M+ K + K PGCSW
Sbjct: 746 EPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSW 789



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 250/520 (48%), Gaps = 77/520 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G        I  +L+  Y +C     A +LF ++
Sbjct: 74  GEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKL 133

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             RN FSW A+I    ++G  E +L  F  M +   F  N ++    KA   L    +G+
Sbjct: 134 RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGR 193

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H +++ +GL+    + SSL ++YGK                               CG
Sbjct: 194 GVHGYVVKSGLEDCVFVASSLADMYGK-------------------------------CG 222

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++DA +VFD   D ++V WN+++ GY+ N ++ EA+ LF  MR+ GV     T+++ LS
Sbjct: 223 VLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLS 282

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A +++G +E GKQ H  A   G+  D I+ ++LL+ Y K G+                  
Sbjct: 283 ASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGL------------------ 324

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD- 364
                        IE A+ +F  M  K +++WN +I G  Q G   +A+   C + +L+ 
Sbjct: 325 -------------IEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAI-YMCQLMRLEK 370

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDAL 422
           L+ D  +LA+++SA A   +L+LG++V         +SD +++++++D Y KCG   DA 
Sbjct: 371 LKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAK 430

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            +F    ++ V+  +I +  +L+A    GL  E  + F  M+ +  + P +  ++ ++  
Sbjct: 431 KVF----DSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLE-GVPPNVITWNLIILS 485

Query: 483 FARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHG 519
             R G ++EA ++  QM       ++  W++++ G V +G
Sbjct: 486 LLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNG 525



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 142/358 (39%), Gaps = 64/358 (17%)

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           ++    SS  +   +S    N E  EAL L  +M    +         +L  C     L 
Sbjct: 28  EQAHSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLS 87

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            GKQ+H    K G            D Y++                 +  +   ++  Y+
Sbjct: 88  TGKQIHARILKNG------------DFYAR-----------------NEYIETKLVIFYA 118

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            C  +E A+ +F  +  +++ SW ++I    + G    AL  F  M + ++  D F + +
Sbjct: 119 KCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPN 178

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------- 419
           V  AC  +     G  V   V   GL+    +++SL D Y KCG                
Sbjct: 179 VCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRN 238

Query: 420 ------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                             +A+ LF++MR  GV+PT +T +  LSA  + G V+EG K   
Sbjct: 239 AVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEG-KQSH 297

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           A+     ++ +    + +++ + + G +  A  + ++M FE DV  W+ I+ G V  G
Sbjct: 298 AIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRM-FEKDVVTWNLIISGYVQQG 354



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 39/234 (16%)

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           +KH      + S  S+   +  L +NG   EAL L   M+  +LR+       ++  C  
Sbjct: 23  SKHHDEQAHSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVY 82

Query: 382 ISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGYDAL----ALFNEM--RNTGV 433
              L  G+Q+ AR+   G     ++ I T LV FY KC  DAL     LF+++  RN   
Sbjct: 83  ERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKC--DALEIAEVLFSKLRVRNVFS 140

Query: 434 KPTIITFTAILSACDHC--GLVK--EGQKWFD------------AMKWQ--------YHI 469
              II     +  C+    G V+  E + + D            A+KW         Y +
Sbjct: 141 WAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVV 200

Query: 470 DPEIEH----YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
              +E      S + D++ + G L++A  + +++P    V  W++++ G V +G
Sbjct: 201 KSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVA-WNALMVGYVQNG 253



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 42/84 (50%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H+G+ +H + ++    +S + I   L+ MY +CG+   A  +F       
Sbjct: 553 LSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSE 612

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLF 95
               NAMI  +   G+ ++++ L+
Sbjct: 613 LPLSNAMISAYALYGNLKEAIALY 636


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 188/611 (30%), Positives = 303/611 (49%), Gaps = 106/611 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C+    +  GKQ+H H L+ G L     + N L+  Y++CG    A  LF+ M
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYG-LEMDASLMNVLIDSYVKCGRVIAAHKLFNGM 310

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KND-FSWNMLISGFAKADLAALEY 123
           P +N  SW  ++ G+ +    +++++LF  M +   K D ++ + +++  + A L AL +
Sbjct: 311 PNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILT--SCASLHALGF 368

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+H++ +   L  DS + +SL+++Y                               A 
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMY-------------------------------AK 397

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYI---SNNEDTEALLLFHKMRRNGVLEDASTL 240
           C  + DAR+VFD       V++N+MI GY    +  E  EAL +F  MR   +     T 
Sbjct: 398 CDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTF 457

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            S+L A +SL  L   KQ+HG   K G+  D+   SAL+D                    
Sbjct: 458 VSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALID-------------------- 497

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                      VYS+C  ++D++ +F  M  K L+ WNSM  G  Q     EAL+LF  +
Sbjct: 498 -----------VYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLEL 546

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                R D+F+ A++++A  N++S++LG++   ++   GL+ +  I+ +L+D Y KCG  
Sbjct: 547 QLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606

Query: 419 ------YD-------------------------ALALFNEMRNTGVKPTIITFTAILSAC 447
                 +D                         AL +  +M + G++P  ITF  +LSAC
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSAC 666

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV++G K F+ M  ++ I+PE EHY CMV L  RAG LN+A  LIE+MP +    +
Sbjct: 667 SHAGLVEDGLKQFELM-LRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIV 725

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W S+L GC   G+  L    AE  I  DP+++ ++  LS+I+A+ G W ++  +R+ M+ 
Sbjct: 726 WRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKV 785

Query: 568 KHVGKLPGCSW 578
           + V K PG SW
Sbjct: 786 EGVVKEPGRSW 796



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 257/555 (46%), Gaps = 108/555 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            ARLLQ   +   +H    +H   +  G+   T  ++N L+ +Y R G    A  +F++M
Sbjct: 47  FARLLQLRASDDLLHYQNVVHGQIIVWGLELDTY-LSNILINLYSRAGGMVYARKVFEKM 105

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKADLAALEYGK- 125
           P RN  SW+ M+      G  E+SL +F      + D     ++S F +A       G+ 
Sbjct: 106 PERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRW 165

Query: 126 ---QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
              Q+ S ++ +G D D  +G+ L++ Y K G+                           
Sbjct: 166 MVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGN--------------------------- 198

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
               ++ AR VFD   + S+V W +MISG +       +L LF+++  + V+ D   L++
Sbjct: 199 ----IDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILST 254

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VLSACS L FLE GKQ+H H  + G+  D  + + L+D+Y K                  
Sbjct: 255 VLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVK------------------ 296

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CGR+  A  +F  MPNK++ISW +++ G  QN    EA++LF +M+K
Sbjct: 297 -------------CGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSK 343

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
             L+ D ++ +S++++CA++ +L  G QV A      L +D  ++ SL+D Y KC     
Sbjct: 344 FGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTD 403

Query: 418 ---------------------GY----------DALALFNEMRNTGVKPTIITFTAILSA 446
                                GY          +AL +F +MR   ++P+++TF ++L A
Sbjct: 404 ARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463

Query: 447 CDHCGLVKEG-QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
                L   G  K    + ++Y ++ +I   S ++D+++   CL ++  + ++M  + D+
Sbjct: 464 S--ASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVK-DL 520

Query: 506 GMWSSILRGCVAHGD 520
            +W+S+  G V   +
Sbjct: 521 VIWNSMFAGYVQQSE 535


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 184/607 (30%), Positives = 296/607 (48%), Gaps = 100/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C     + +GKQLH   +K    +S L   N L+ MY+R    +DA  +F  +P +
Sbjct: 171 IIKACACAGDVVLGKQLHAQVIKLES-SSHLIAQNALIAMYVRFNQMSDASKVFYGIPAK 229

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL---EYGKQI 127
           +  SW+++I GF +LG + ++L     M     F  N  I G +    ++L   +YG QI
Sbjct: 230 DLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQI 289

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H   +   L  +++ G SL ++Y                               A CG +
Sbjct: 290 HGLCIKLELTGNAIAGCSLCDMY-------------------------------ARCGFL 318

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           + ARRVF++     +  WN +I+G  +N    EA+ +F +MR +G + DA +L S+L A 
Sbjct: 319 DSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQ 378

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           +    L  G Q+H    K G + D+ V                                N
Sbjct: 379 TKPMALCQGMQIHSFIIKCGFLADLSVC-------------------------------N 407

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           +++T+Y+ C  +    ++F    NK+  +SWN+++    Q+  P+E L LF  M   +  
Sbjct: 408 SLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECE 467

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  ++ +++  C  ISSL+LG QV       GL  +Q I   L+D Y KCG        
Sbjct: 468 PDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRI 527

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL LF EM+++G++P  +TF  +L+AC H GLV
Sbjct: 528 FDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLV 587

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG K +  M+ ++ I P  EH SC+VDL ARAG LNEA   I++M  E DV +W ++L 
Sbjct: 588 EEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLS 647

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C   G+  L +K AE ++++DP N+ A++ L S+ A+SG WE ++L+R  M++  V K+
Sbjct: 648 ACKTQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSMKKHDVKKI 707

Query: 574 PGCSWAD 580
           PG SW D
Sbjct: 708 PGQSWID 714



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 181/434 (41%), Gaps = 99/434 (22%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +L  G++IH HIL +   +D++L + ++++YGKC                          
Sbjct: 79  SLAQGRKIHDHILNSNCKYDTILNNHILSMYGKC-------------------------- 112

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                G + DAR VFD   + + V + S+I+GY  N ++ EA+ L+ KM +  ++ D   
Sbjct: 113 -----GSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFA 167

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             S++ AC+  G +  GKQ+H    K+     +I  +AL+  Y +    SDA K      
Sbjct: 168 FGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASK------ 221

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                                    +F  +P K LISW+S+I G SQ G   EAL     
Sbjct: 222 -------------------------VFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKE 256

Query: 360 MNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           M    +   +++   S + AC+++   + G Q+      + L  + I   SL D Y +CG
Sbjct: 257 MLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCG 316

Query: 419 Y---------------------------------DALALFNEMRNTGVKPTIITFTAILS 445
           +                                 +A+++F+EMRN+G  P  I+  ++L 
Sbjct: 317 FLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLC 376

Query: 446 ACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           A      + +G +     +K  +  D  +   + ++ ++     L    NL E    +AD
Sbjct: 377 AQTKPMALCQGMQIHSFIIKCGFLADLSV--CNSLLTMYTFCSDLYCCFNLFEDFRNKAD 434

Query: 505 VGMWSSILRGCVAH 518
              W++IL  C+ H
Sbjct: 435 SVSWNAILTACLQH 448



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 140/358 (39%), Gaps = 69/358 (19%)

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEH 255
           T  T  +M N  I+    N+   EAL  F   ++N   +    T  S++ ACSS   L  
Sbjct: 24  TIKTEELM-NDHINSLCRNSFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQ 82

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G+++H H        D I+ + +L  Y K G   DA                        
Sbjct: 83  GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDA------------------------ 118

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                  + +F  MP ++L+S+ S+I G SQNG   EA+ L+  M + DL  D+F+  S+
Sbjct: 119 -------REVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSI 171

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------- 418
           I ACA    + LG+Q+ A+V  +   S  I   +L+  Y +                   
Sbjct: 172 IKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDL 231

Query: 419 ----------------YDALALFNEMRNTGV-KPTIITFTAILSACDHCGLVKEGQKWFD 461
                           ++AL+   EM + GV  P    F + L AC        G +   
Sbjct: 232 ISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQ-IH 290

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            +  +  +         + D++AR G L+ A  +  Q+    D   W+ I+ G   +G
Sbjct: 291 GLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIE-RPDTASWNVIIAGLANNG 347


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 181/596 (30%), Positives = 286/596 (47%), Gaps = 99/596 (16%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + +GKQ+H   +K G L+S + +AN L+ MY + G    A  +F++M   +  SWN+MI 
Sbjct: 920  LELGKQVHGIAVKSG-LDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 978

Query: 81   GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEYGKQIHSHILVNGLD 137
               +   +E+S+ LF  +  +     +  ++   +A    +  L   +QIH H L  G  
Sbjct: 979  SCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNI 1038

Query: 138  FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
             DS + ++L+++                               Y+  GKM +A  +F   
Sbjct: 1039 ADSFVATTLIDV-------------------------------YSKSGKMEEAEFLFQNK 1067

Query: 198  TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
             D     WN+M+ GYI  N+  +AL LF  + ++G   D  TLA+   AC  L  L+ GK
Sbjct: 1068 DDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGK 1127

Query: 258  QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
            Q+H HA K G   D+ V S +LD Y K                               CG
Sbjct: 1128 QIHAHAIKAGFDSDLHVNSGILDMYIK-------------------------------CG 1156

Query: 318  RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
             + +A  +F  +     ++W SMI G   NG+  +AL ++  M +  +  D+++ A++I 
Sbjct: 1157 DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIK 1216

Query: 378  ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------- 418
            A + +++LE G Q+ A V  +   SD  + TSLVD Y KCG                   
Sbjct: 1217 ASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIAL 1276

Query: 419  --------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                           +A+ LF  M++ G++P  ++F  ILSAC H GL  E  ++  +M 
Sbjct: 1277 WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMP 1336

Query: 465  WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
              Y I+PEIEHYSC+VD   RAG + EA  +IE MPF+A   +  ++L  C   GD   G
Sbjct: 1337 NDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETG 1396

Query: 525  RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            ++VA R+  L+P ++ AY+ LS+I+A +  W+  +  R +M+ K+V K PG SW D
Sbjct: 1397 KRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWID 1452



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 149/595 (25%), Positives = 264/595 (44%), Gaps = 117/595 (19%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            LA +L+ C     +   + +H + +K G L   + ++  L+ +Y +CG   DA LLFD M
Sbjct: 730  LAPVLKLCLNSGCLWAAEGVHGYAIKIG-LEWDVFVSGALVNIYSKCGRMRDARLLFDWM 788

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAD------ 117
              R+   WN M++G+++LG ++++ QLF+       + ++FS  ++++G ++ +      
Sbjct: 789  RERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKW 848

Query: 118  -------------------------------LAALEYGKQIHSHILVNGLDFDSVLGSSL 146
                                           L A +    I   + +NGL+ D    + L
Sbjct: 849  LADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLL 908

Query: 147  VNLYGKCG--DFNSANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            V L    G  D     QV  +      + D    ++L++ Y+  G    AR VF+     
Sbjct: 909  VVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHL 968

Query: 201  SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL-GFLEHGKQV 259
              + WNSMIS    ++ + E++ LF  +   G+  D  TLASVL ACSSL   L   +Q+
Sbjct: 969  DLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQI 1028

Query: 260  HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
            H HA K G I D  VA+ L+D YSK                                G++
Sbjct: 1029 HVHALKTGNIADSFVATTLIDVYSK-------------------------------SGKM 1057

Query: 320  EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
            E+A+ +F+   +  L  WN+M+ G        +AL+LF  ++K   + D+ +LA+   AC
Sbjct: 1058 EEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKAC 1117

Query: 380  ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------- 418
              +  L+ G+Q+ A     G DSD  +++ ++D Y KCG                     
Sbjct: 1118 GCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWT 1177

Query: 419  ------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKW 465
                          AL +++ MR + V P   TF  ++ A      +++G++   + +K 
Sbjct: 1178 SMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKL 1237

Query: 466  QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
                DP +   + +VD++A+ G + +A  L ++M    ++ +W+++L G   HG+
Sbjct: 1238 DCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGN 1289



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 150/607 (24%), Positives = 257/607 (42%), Gaps = 120/607 (19%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            LL++  + H++ +GK  H   +  G       ++N LL MY +CG+ + A  +FD  P R
Sbjct: 627  LLRTAISTHNLLLGKCTHARIVVSGSAGDHF-LSNNLLTMYSKCGSLSSARQVFDTTPER 685

Query: 71   NCFSWNAMIEGFMKL-----GHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEY 123
            +  +WNA++  +        G+ ++ L LF ++      +  M ++   K  L +  L  
Sbjct: 686  DLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 745

Query: 124  GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
             + +H + +  GL++D  +  +LVN+Y KCG    A  + + M+E D    + ++ GY  
Sbjct: 746  AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 805

Query: 184  CGKMNDARRVFDR--------------------------------------------TTD 199
             G   +A ++F                                              + D
Sbjct: 806  LGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDD 865

Query: 200  TSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
               V  WN  +S  +   ++  A+  F  M    +  DA TL  VL+A +    LE GKQ
Sbjct: 866  NPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQ 925

Query: 259  VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
            VHG A K G+  DV VA++L++ YSK G    A ++F+++K  D                
Sbjct: 926  VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD---------------- 969

Query: 319  IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
                           LISWNSMI   +Q+    E+++LF ++    L+ D F+LASV+ A
Sbjct: 970  ---------------LISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRA 1014

Query: 379  CAN-ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------------------- 417
            C++ I  L +  Q+       G  +D  ++T+L+D Y K                     
Sbjct: 1015 CSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLAC 1074

Query: 418  -------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                         G  AL LF+ +  +G K   IT      AC    L+ +G K   A  
Sbjct: 1075 WNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQG-KQIHAHA 1133

Query: 465  WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             +   D ++   S ++D++ + G +  A  +   +    DV  W+S++ GCV +G++   
Sbjct: 1134 IKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA-WTSMISGCVDNGNEDQA 1192

Query: 525  RKVAERM 531
             ++  RM
Sbjct: 1193 LRIYHRM 1199



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 158/326 (48%), Gaps = 44/326 (13%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            LA   ++C     +  GKQ+H H +K G  +S L + + +L MY++CG+  +A ++F+ +
Sbjct: 1110 LATAAKACGCLVLLDQGKQIHAHAIKAG-FDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 1168

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
               +  +W +MI G +  G+++++L++++ M Q     +++++  LI   A + + ALE 
Sbjct: 1169 SAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIK--ASSCVTALEQ 1226

Query: 124  GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            G+Q+H++++      D  +G+SLV++Y KCG+                            
Sbjct: 1227 GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN---------------------------- 1258

Query: 184  CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
               + DA R+F +    +  +WN+M+ G   +    EA+ LF  M+ +G+  D  +   +
Sbjct: 1259 ---IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGI 1315

Query: 244  LSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
            LSACS  G      + +H      G+  ++   S L+D   + G+  +A K+   +    
Sbjct: 1316 LSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKA 1375

Query: 303  TILLNTMITVYSSC---GRIEDAKHI 325
            +  +N  +    +C   G +E  K +
Sbjct: 1376 SASINRAL--LGACRIQGDVETGKRV 1399


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 165/539 (30%), Positives = 280/539 (51%), Gaps = 42/539 (7%)

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
           S+++   +   N FSWN+ I GF++++     +   ++  +L +G         +   L+
Sbjct: 106 SVKILKGIENPNIFSWNVTIRGFSESENPKESF--LLYKQMLRHGCCESRPDHFTYPVLF 163

Query: 151 GKCGDFNSAN-------QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
             C D   ++        VL +  E      +A I  +A+CG M +AR+VFD +     V
Sbjct: 164 KVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLV 223

Query: 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
            WN +I+GY    E  +A+ ++  M   GV  D  T+  ++S+CS LG L  GK+ + + 
Sbjct: 224 SWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYV 283

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
            + G+   + + +AL+D +SK G   +A ++F  L+    +   TMI+ Y+ CG ++ ++
Sbjct: 284 KENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSR 343

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
            +F  M  K ++ WN+MI G  Q     +AL LF  M   + + D+ ++   +SAC+ + 
Sbjct: 344 KLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLG 403

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------- 418
           +L++G  +   +    L  +  + TSLVD Y KCG                         
Sbjct: 404 ALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIG 463

Query: 419 --------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
                     A++ FNEM + G+ P  ITF  +LSAC H G+++ G+ +F  MK +++++
Sbjct: 464 GLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLN 523

Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAER 530
           P+++HYS MVDL  RAG L EA  L+E MP EAD  +W ++L GC  HG+  LG K A++
Sbjct: 524 PQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKK 583

Query: 531 MIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFL 589
           ++ELDP ++  Y+ L  ++  +  WE +   R +M E+ V K+PGCS  +     C F+
Sbjct: 584 LLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFI 642



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 152/373 (40%), Gaps = 96/373 (25%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ SC+    ++ GK+ +  ++K+  L  T+P+ N L+ M+ +CG+  +A  +FD + +R
Sbjct: 263 LVSSCSMLGDLNRGKEFY-EYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKR 321

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-------------- 116
              SW  MI G+ + G  + S +LF+ M +K+   WN +I G  +A              
Sbjct: 322 TIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQ 381

Query: 117 -------------------DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
                               L AL+ G  IH +I    L  +  LG+SLV++Y KCG+ +
Sbjct: 382 TSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNIS 441

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
            A  V + ++  +    +A+I G A  G  + A   F+   D                  
Sbjct: 442 EALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDA----------------- 484

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
                         G+  D  T   +LSAC   G ++ G+                    
Sbjct: 485 --------------GIAPDEITFIGLLSACCHGGMIQTGR-------------------- 510

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS- 336
             D +S+         L  +LK Y     + M+ +    G +E+A  +  +MP ++  + 
Sbjct: 511 --DYFSQM---KSRFNLNPQLKHY-----SIMVDLLGRAGLLEEADRLMESMPMEADAAV 560

Query: 337 WNSMIVGLSQNGS 349
           W +++ G   +G+
Sbjct: 561 WGALLFGCRMHGN 573


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 182/612 (29%), Positives = 295/612 (48%), Gaps = 106/612 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-- 65
           L  +L+ C++   I  G+ +H   +K G   +   +   L+ MY +C   ++A  LF   
Sbjct: 165 LGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTG-LVDMYAKCKCVSEAEFLFKGL 223

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAAL 121
           E  R+N   W AM+ G+ + G   K+++ F  M  +    N +++  +++  A + + A 
Sbjct: 224 EFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILT--ACSSVLAR 281

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
            +G+Q+H  I+ +G       GS++                         +  SAL+  Y
Sbjct: 282 CFGEQVHGFIVKSGF------GSNV-------------------------YVQSALVDMY 310

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           A CG + +A+ + +   D   V WNS++ G++ +  + EAL LF  M    +  D  T  
Sbjct: 311 AKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFP 370

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           SVL+ C  +G + + K VHG   K G  +  +V++AL+D Y+K                 
Sbjct: 371 SVLNCCV-VGSI-NPKSVHGLIIKTGFENYKLVSNALVDMYAKT---------------- 412

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                          G ++ A  +F  M  K +ISW S++ G +QN S  E+L +FC+M 
Sbjct: 413 ---------------GDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMR 457

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
              +  D+F +AS++SACA ++ LE G+QV       GL   Q +  SLV  Y KCG   
Sbjct: 458 VTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLD 517

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          ++L  ++ M ++G +P  ITF  +L AC 
Sbjct: 518 DADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACS 577

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV EG+K+F  M   Y I P  EHY+CM+DLF R+G L+EA  L++QM  + D  +W
Sbjct: 578 HAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVW 637

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            S+L  C  H +  L  + A  + EL+P NA  Y+ LS++++ S +W   + IR +M+ K
Sbjct: 638 KSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSK 697

Query: 569 HVGKLPGCSWAD 580
            + K PGCSW +
Sbjct: 698 GIVKEPGCSWLE 709



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 141/553 (25%), Positives = 247/553 (44%), Gaps = 143/553 (25%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
            N+LL    + G   DA  LFD+MP+++ +SWN MI  ++ +G   ++ +LF+    K+ 
Sbjct: 68  TNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSS 127

Query: 104 FSWNMLISGFAK---------------------------------ADLAALEYGKQIHSH 130
            +W+ +ISG+ K                                 + L  ++ G+ IH  
Sbjct: 128 ITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGF 187

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           ++ NG + +  + + LV++Y KC   + A           +F    L             
Sbjct: 188 VVKNGFEGNVFVVTGLVDMYAKCKCVSEA-----------EFLFKGL------------- 223

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
              FDR    + V+W +M++GY  N +  +A+  F  M   GV  +  T  ++L+ACSS+
Sbjct: 224 --EFDR---KNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSV 278

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
                G+QVHG   K G   +V V SAL+D Y+K                          
Sbjct: 279 LARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAK-------------------------- 312

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                CG +++AK++  TM +  ++SWNS++VG  ++G   EAL LF NM+  ++++D +
Sbjct: 313 -----CGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDY 367

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK-----CGY------ 419
           +  SV++ C  + S+   + V   +   G ++ +++S +LVD Y K     C Y      
Sbjct: 368 TFPSVLNCCV-VGSIN-PKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM 425

Query: 420 ----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                 ++L +F +MR TGV P      +ILSAC    L++ G+
Sbjct: 426 LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGK 485

Query: 458 KWF-----DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           +         ++W   +      Y+ +V ++A+ GCL++A  +   M  + DV  W++I+
Sbjct: 486 QVHLDFIKSGLRWSQSV------YNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAII 538

Query: 513 RGCVAHGDKGLGR 525
              V +   G GR
Sbjct: 539 ---VGYAQNGKGR 548



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 133/304 (43%), Gaps = 59/304 (19%)

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
           H       + +   + LL+  SK G  +DA KLF ++   D    NTMI+ Y + GR+ +
Sbjct: 55  HTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVE 114

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+ +F     KS I+W+S+I G  + G  +EA DLF +M     +  +F+L SV+  C++
Sbjct: 115 ARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSS 174

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------------------ 417
           +  ++ GE +   V   G + +  + T LVD Y KC                        
Sbjct: 175 LGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWT 234

Query: 418 -----------GYDALALFNEMRNTGVKPTIITFTAILSACD-----------HCGLVKE 455
                      GY A+  F  M   GV+    TF  IL+AC            H  +VK 
Sbjct: 235 AMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS 294

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G                +   S +VD++A+ G L  A N++E M  + DV  W+S++ G 
Sbjct: 295 G------------FGSNVYVQSALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGF 341

Query: 516 VAHG 519
           V HG
Sbjct: 342 VRHG 345


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  286 bits (731), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 181/607 (29%), Positives = 297/607 (48%), Gaps = 71/607 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+    +  GK +H   LK G++ +   ++N L+ +Y  C    +A  +FD MP R
Sbjct: 248 ILSACSDLQDLKSGKAIHGFALKHGMVENVF-VSNALVNLYESCLCVREAQAVFDLMPHR 306

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           N  +WN++   ++  G  +K L +F  M         M +S    A   L  L+ GK IH
Sbjct: 307 NVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIH 366

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
              + +G+  D  + ++LVNLY  C     A  V ++M   +    ++L S Y NCG   
Sbjct: 367 GFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCG--- 423

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                F +                       + L +F +M  NGV  D  T+ S+L ACS
Sbjct: 424 -----FPQ-----------------------KGLNVFREMVLNGVKPDLVTMLSILHACS 455

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            L  L+ GK +HG A + G+++DV V +ALL  Y+K     +A  +F  +   +    N 
Sbjct: 456 DLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNG 515

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
           ++T Y +    E   ++F  M    +    I+W+ +I G  +N    EA+++F  M  + 
Sbjct: 516 ILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMG 575

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------- 417
            + D+ ++ S++ AC+    L +G+++   V     D D   + +LVD Y KC       
Sbjct: 576 FKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSR 635

Query: 418 --------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                     G +AL+LF +M  + VKP   TFT +LSAC H  
Sbjct: 636 NVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSM 695

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV+EG + F++M   + ++PE EHY+C+VD+++RAGCL EA   I++MP E     W + 
Sbjct: 696 LVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAF 755

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L GC  + +  L +  A+++ E+DP  +  Y+ L +I  T+  W ++S IR +M+E+ + 
Sbjct: 756 LAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGIT 815

Query: 572 KLPGCSW 578
           K PGCSW
Sbjct: 816 KTPGCSW 822



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 127/525 (24%), Positives = 233/525 (44%), Gaps = 104/525 (19%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ H    + G++ S + I N  +  Y +C     A  +FD++  R+  +WN++   ++ 
Sbjct: 60  KQFHDDATRCGVM-SDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVN 118

Query: 85  LGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
            G  ++ L +F  M     + N  + + ++ G +  DL  L+ GK+IH  ++ +G+  D 
Sbjct: 119 CGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCS--DLQDLKSGKEIHGFVVRHGMVEDV 176

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            + S+ VN Y                               A C  + +A+ VFD     
Sbjct: 177 FVSSAFVNFY-------------------------------AKCLCVREAQTVFDLMPHR 205

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             V WNS+ S Y++     + L +F +M  +GV  D  T++ +LSACS L  L+ GK +H
Sbjct: 206 DVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIH 265

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G A K G++++V V++AL                               + +Y SC  + 
Sbjct: 266 GFALKHGMVENVFVSNAL-------------------------------VNLYESCLCVR 294

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
           +A+ +F  MP++++I+WNS+       G P + L++F  M    ++ D  +++S++ AC+
Sbjct: 295 EAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACS 354

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC------------------------- 415
            +  L+ G+ +       G+  D  + T+LV+ Y                          
Sbjct: 355 QLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNS 414

Query: 416 ------KCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                  CG+    L +F EM   GVKP ++T  +IL AC     +K G K       ++
Sbjct: 415 LSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSG-KVIHGFAVRH 473

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
            +  ++   + ++ L+A+  C+ EA  + + +P   +V  W+ IL
Sbjct: 474 GMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHR-EVASWNGIL 517



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 138/637 (21%), Positives = 272/637 (42%), Gaps = 143/637 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L  C+    +  GK++H   ++ G++     +++  +  Y +C    +A  +FD M
Sbjct: 144 VSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVF-VSSAFVNFYAKCLCVREAQTVFDLM 202

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
           P R+  +WN++   ++  G  +K L +F  M     + +  + + ++S  A +DL  L+ 
Sbjct: 203 PHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILS--ACSDLQDLKS 260

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK IH   L +G+  +  + ++LVNLY  C     A  V ++M   +    ++L S Y N
Sbjct: 261 GKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVN 320

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG        F +                       + L +F +M  NGV  D   ++S+
Sbjct: 321 CG--------FPQ-----------------------KGLNVFREMGLNGVKPDPMAMSSI 349

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L ACS L  L+ GK +HG A K G+++DV V +AL                         
Sbjct: 350 LPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTAL------------------------- 384

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                 + +Y++C  + +A+ +F  MP++++++WNS+       G P + L++F  M   
Sbjct: 385 ------VNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLN 438

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
            ++ D  ++ S++ AC+++  L+ G+ +       G+  D  +  +L+  Y KC      
Sbjct: 439 GVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREA 498

Query: 418 --------------------------GYD-ALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      Y+  L +F++M    VK   IT++ ++  C   
Sbjct: 499 QVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKN 558

Query: 451 GLVKEGQKWFDAMK----------------------------------WQYHIDPEIEHY 476
             ++E  + F  M+                                  +++  D ++   
Sbjct: 559 SRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLART 618

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI--EL 534
           + +VD++A+ G L+ + N+ + MP + DV  W++++     HG+      + E+M+   +
Sbjct: 619 NALVDMYAKCGGLSLSRNVFDMMPIK-DVFSWNTMIFANGMHGNGKEALSLFEKMLLSMV 677

Query: 535 DPENACAYIQLS----SIFATSGEWEKSSLIRDIMRE 567
            P++A     LS    S+    G    +S+ RD + E
Sbjct: 678 KPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVE 714



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 70/361 (19%)

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
           I +    EA+ ++   R  G+  D     +V  AC++       KQ H  A + GV+ DV
Sbjct: 16  IPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDV 75

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            + +A +  Y K      A ++F +L   D +  N++   Y +CG  +   ++FR M   
Sbjct: 76  SIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM--- 132

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
                     GL++                  ++ +  +++S++  C+++  L+ G+++ 
Sbjct: 133 ----------GLNK------------------VKANPLTVSSILPGCSDLQDLKSGKEIH 164

Query: 393 ARVTIIGLDSDQIISTSLVDFYCK-------------------------------CGY-- 419
             V   G+  D  +S++ V+FY K                               CG+  
Sbjct: 165 GFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQ 224

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
             L +F EM   GVKP  +T + ILSAC     +K G K       ++ +   +   + +
Sbjct: 225 KGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSG-KAIHGFALKHGMVENVFVSNAL 283

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG--DKGLG--RKVAERMIELD 535
           V+L+    C+ EA  + + MP   +V  W+S+    V  G   KGL   R++    ++ D
Sbjct: 284 VNLYESCLCVREAQAVFDLMPHR-NVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPD 342

Query: 536 P 536
           P
Sbjct: 343 P 343


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  286 bits (731), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 167/553 (30%), Positives = 285/553 (51%), Gaps = 66/553 (11%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAA 120
           +FD++P  +     + I  + +L    ++L+ F  M Q N       I    K  A L A
Sbjct: 52  VFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLA 111

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           ++ GKQ+HS ++  G        ++L+N Y K  D  SA  + + +   D    + LIS 
Sbjct: 112 IDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISA 171

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+  G++  AR +FD+  D S V WN+MIS Y  N +  +  ++F +M+      +  TL
Sbjct: 172 YSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITL 231

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A+VLS C+ LG LE G ++        +  ++IV++A+L+ Y K                
Sbjct: 232 ATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVK---------------- 275

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CG ++D + +F  M  + +++W++MI G +QNG   EAL+LF NM
Sbjct: 276 ---------------CGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENM 320

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
               ++ +  +L SV+SACA + S+E GE++ + V   GL S+  ++++L+  Y KCG  
Sbjct: 321 KSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNI 380

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           DA+AL+N M+   VKP  ITF  +++AC
Sbjct: 381 IKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTAC 440

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H G V+ G ++F +M+  ++I P IEH++C+VDLF R+G L +A   I +M  E +V +
Sbjct: 441 THAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVI 500

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L     H +  L     ++++EL+P+N+  Y+ LS+I+A++G W+++  +R +M++
Sbjct: 501 WGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKD 560

Query: 568 KHVGKLPGCSWAD 580
           K V K    SW +
Sbjct: 561 KRVQKAAAYSWVE 573



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 239/505 (47%), Gaps = 64/505 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + +SC +  +I VGKQ+H   ++ G  +S++   N L+  Y +  +   A L+FD +  +
Sbjct: 102 IFKSCASLLAIDVGKQVHSLVIRYG-FHSSVFCQNALINFYAKINDLGSAELIFDGILVK 160

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +  ++N +I  + + G    + +LF+ M  ++  SWN +IS +A+        G  I   
Sbjct: 161 DTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQN--GDYHKGWIIFQR 218

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-------SALISGYAN 183
           +     + + +  ++++++  K GD       L + K  D+  L       +A++  Y  
Sbjct: 219 MQDEMCEPNEITLATVLSICAKLGDLEMG---LRIKKLNDNKNLGSNMIVSTAMLEMYVK 275

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG ++D R VFD       V W++MI+GY  N    EAL LF  M+   +  +  TL SV
Sbjct: 276 CGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSV 335

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSAC+ LG +E G+++  +    G+I +V VASALL  YSK G    A ++F +L   D 
Sbjct: 336 LSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDN 395

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           +  N                               SMI+GL+ NG   +A+ L+  M ++
Sbjct: 396 VTWN-------------------------------SMIMGLAINGFAEDAIALYNRMKEI 424

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS------LVDFYCKC 417
           +++ +  +   +++AC +   +ELG + F       + SD  IS +      +VD +C+ 
Sbjct: 425 EVKPNNITFVGLMTACTHAGHVELGLEFFR-----SMRSDHNISPNIEHFACIVDLFCRS 479

Query: 418 G--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE- 474
           G   DA      M    V+P ++ +  +LSA      V+  +    A K    ++P+   
Sbjct: 480 GRLIDAYEFICRME---VEPNVVIWGTLLSASRIHLNVELAEL---AGKKLLELEPDNSG 533

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQM 499
           +Y  + +++A AG   EA+ + + M
Sbjct: 534 NYVILSNIYASAGRWQEALKVRKLM 558



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 187/391 (47%), Gaps = 37/391 (9%)

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           N   +  AR+VFD+       +  S I+ Y   + + EAL  F  M +N V     T+  
Sbjct: 42  NASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPP 101

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +  +C+SL  ++ GKQVH    + G    V   +AL++ Y+K      A  +F  + V D
Sbjct: 102 IFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKD 161

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
           TI  N +I+ YS  G +  A+ +F  M ++S++SWN+MI   +QNG   +   +F  M  
Sbjct: 162 TIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQD 221

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
                ++ +LA+V+S CA +  LE+G ++        L S+ I+ST++++ Y KCG    
Sbjct: 222 EMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDD 281

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +AL LF  M++  +KP  +T  ++LSAC  
Sbjct: 282 GRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQ 341

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            G V+ G++    ++ +  I   +   S ++ ++++ G + +A  + +++P + D   W+
Sbjct: 342 LGSVETGERIGSYVESRGLIS-NVYVASALLGMYSKCGNIIKARQIFDKLP-QRDNVTWN 399

Query: 510 SILRGCVAHGDKGLGRKVAERM--IELDPEN 538
           S++ G   +G       +  RM  IE+ P N
Sbjct: 400 SMIMGLAINGFAEDAIALYNRMKEIEVKPNN 430



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 153/312 (49%), Gaps = 21/312 (6%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           L S + ++  +L+MY++CG   D  L+FD M RR+  +W+AMI G+ + G   ++L+LF 
Sbjct: 259 LGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFE 318

Query: 97  VMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 152
            M     + ND +   ++S  A A L ++E G++I S++   GL  +  + S+L+ +Y K
Sbjct: 319 NMKSAQIKPNDVTLVSVLS--ACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSK 376

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSM 208
           CG+   A Q+ + + + D+   +++I G A  G   DA  +++R  +     +++ +  +
Sbjct: 377 CGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGL 436

Query: 209 ISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHA--CK 265
           ++           L  F  MR +  +  +    A ++       F   G+ +  +   C+
Sbjct: 437 MTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDL-----FCRSGRLIDAYEFICR 491

Query: 266 VGVIDDVIVASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           + V  +V++   LL     +    +   A K   EL+  ++     +  +Y+S GR ++A
Sbjct: 492 MEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEA 551

Query: 323 KHIFRTMPNKSL 334
             + + M +K +
Sbjct: 552 LKVRKLMKDKRV 563


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  286 bits (731), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 181/595 (30%), Positives = 281/595 (47%), Gaps = 104/595 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
            +Q+H+  +K   ++    + + L+  Y + G   +A  LFD MP RN  SW  MI G+ 
Sbjct: 131 ARQVHVLGIKTASIDDVF-VGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYA 189

Query: 84  KLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG-LDF 138
                +++L +F +M       N+F +  ++S     +   ++ GKQ+H  ++ NG L+F
Sbjct: 190 SKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEF--VDSGKQVHCVVVKNGVLEF 247

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
            SVL                                +AL++ YA CG +N +  +F+  +
Sbjct: 248 VSVL--------------------------------NALVTMYAKCGNLNYSLMLFEMCS 275

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           D +++ W+++I+GY    +  +AL LF KM   G +    TL  VL ACS +  +E GKQ
Sbjct: 276 DKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQ 335

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
            HG+  K G    +  A+AL+D Y+K G   DA K F  L   D +L             
Sbjct: 336 THGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVL------------- 382

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
                             W S+I G  QNG   EAL ++  M    +  ++ ++ASV+ A
Sbjct: 383 ------------------WTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKA 424

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------- 418
           C+N+++LE G+Q+ AR    GL  +  I ++L   Y KCG                    
Sbjct: 425 CSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSW 484

Query: 419 -------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         +AL LF EMR  G KP  ITF  +LSAC H G+VK G  +F+ M  
Sbjct: 485 NAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFD 544

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
           ++ + P +EHY+CMVD+ +RAG LNEA   IE    +  + +W  +L  C  H +  LG 
Sbjct: 545 EFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGA 604

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
              E+++EL    + AY+ LSSI+   G       +R +M+ + V K  GCSW +
Sbjct: 605 YAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIE 659



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 152/365 (41%), Gaps = 70/365 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C+   +I  GKQ H + LK G   + +  A  L+ MY + G   DA   FD +
Sbjct: 317 LVGVLKACSDVAAIEEGKQTHGYLLKSG-YETQIYTATALVDMYAKFGFTGDARKGFDFL 375

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
              +   W ++I G+++ G  E++L ++  M  +      + ++   KA  +LAALE GK
Sbjct: 376 LEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGK 435

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+  +  GL  +  + S+L  +Y KCG       +   M + D    +A+ISG +   
Sbjct: 436 QIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQ-- 493

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                                        N    EAL LF +MR  G   D  T  +VLS
Sbjct: 494 -----------------------------NGHGREALELFEEMRLEGTKPDHITFVTVLS 524

Query: 246 ACSSLGFLEHG--------------KQVHGHACKVGVIDDV--------IVASALLD--- 280
           ACS +G ++ G               +V  +AC V V+            + SA++D   
Sbjct: 525 ACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGM 584

Query: 281 -----------TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
                       +    + + A +   EL   ++     + ++Y++ GR+ D   + R M
Sbjct: 585 CLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMM 644

Query: 330 PNKSL 334
             + +
Sbjct: 645 KVRGV 649



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 124/278 (44%), Gaps = 68/278 (24%)

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE--ALDLFCNMNK 362
           L N +I  Y+ CG +  AK +F  + +K+++S+N +I GLS NGS      L+LF  M  
Sbjct: 45  LANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIA 104

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFAR-VTIIGLDS----DQIISTSLVDFYCKC 417
            ++  D  +   V +A A    L LG    AR V ++G+ +    D  + +SLV+FYCK 
Sbjct: 105 NNILPDAHTFPGVFTAAA----LNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKV 160

Query: 418 G--YDALALFNEM--RNTGVKPTIIT-----------------------------FTAIL 444
           G  ++A  LF+ M  RN     T+I+                             FT++L
Sbjct: 161 GCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVL 220

Query: 445 SA--CD---------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           SA  C          HC +VK G   F            +   + +V ++A+ G LN ++
Sbjct: 221 SALVCPEFVDSGKQVHCVVVKNGVLEF------------VSVLNALVTMYAKCGNLNYSL 268

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            L E M  + +   WS+++ G    GD     K+  +M
Sbjct: 269 MLFE-MCSDKNAITWSALITGYSQAGDSHKALKLFSKM 305


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  286 bits (731), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 176/554 (31%), Positives = 276/554 (49%), Gaps = 68/554 (12%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAA 120
           LFD +PR       A +    KL   ++ ++  + + ++     +  I    K  A  AA
Sbjct: 34  LFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCALSAA 93

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              G Q H H LV G+  D  + ++LV+ Y K G+ +SA      M   D   ++ LI+G
Sbjct: 94  SCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLITG 153

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+  G + +ARR+FD     +S  WNSMI+ Y    E  EAL LF +M R G   +A T+
Sbjct: 154 YSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITI 213

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            +V S C+  G LE G++      +   + +VIV +AL++ Y K                
Sbjct: 214 TTVFSICAKTGDLETGRRAKAWVSEED-LQNVIVHTALMEMYVK---------------- 256

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          C  I++A+  F  MP + +++W++MI G S NG P E+L+LF  M
Sbjct: 257 ---------------CRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERM 301

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
              + + ++ +L  V+SACA + S ELGEQ+ + +    L     + ++L+D Y KCG+ 
Sbjct: 302 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHV 361

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           DA+AL+ EM   GV+P  ITF A+L+AC
Sbjct: 362 ARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTAC 421

Query: 448 DHCGLVKEGQKWFDAMKW-QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
            H GLV +G  +F  MK  + H  P++EH +C+VDL  ++G L EA   I  M  E +  
Sbjct: 422 THAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAV 481

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W+++L  C AH D  L +  A +++ L+P ++  Y+ LS+I+A +G W     IRD+MR
Sbjct: 482 IWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMR 541

Query: 567 EKHVGKLPGCSWAD 580
            K++ KL   SW +
Sbjct: 542 SKNLQKLSAYSWIE 555



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 208/444 (46%), Gaps = 44/444 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+SC    +   G Q H H L +G+L     +   L+  Y + GN   A++ F+EMP +
Sbjct: 84  VLKSCALSAASCQGTQTHCHALVRGMLGDVF-VQTALVDFYAKNGNMDSAVMAFEEMPIK 142

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +    N +I G+ + G  E++ +LF+ MP+K   SWN +I+ +A       +    +   
Sbjct: 143 DPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHG--GEFQEALTLFDQ 200

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKM 187
           +L  G   +++  +++ ++  K GD  +  +    + E D       +AL+  Y  C  +
Sbjct: 201 MLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAI 260

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           ++ARR FDR      V W++MI+GY  N    E+L LF +M+      +  TL  VLSAC
Sbjct: 261 DEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSAC 320

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + LG  E G+Q+  +     +     + SAL+D Y+K                       
Sbjct: 321 AQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTK----------------------- 357

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                   CG +  A+ +F  M  K +I+WNSMI GL+ NG   +A+ L+  M    ++ 
Sbjct: 358 --------CGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQP 409

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS--TSLVDFYCKCG--YDALA 423
           ++ +  ++++AC +   ++ G   F  +      +   +     +VD  CK G  ++A  
Sbjct: 410 NEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYK 469

Query: 424 LFNEMRNTGVKPTIITFTAILSAC 447
              +M    V+P  + +T +LSAC
Sbjct: 470 FICDME---VEPNAVIWTTLLSAC 490



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 172/367 (46%), Gaps = 44/367 (11%)

Query: 190 ARRVFD---RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           AR +FD   R T      + S++S    + E  EA+   H  RR G +  +  +  VL +
Sbjct: 31  ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLH--RRGGAIP-SGCIPLVLKS 87

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+       G Q H HA   G++ DV V +AL+D Y+K G    A   F E+ + D I +
Sbjct: 88  CALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPM 147

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +IT YS  G +E+A+ +F +MP K+  SWNSMI   +  G   EAL LF  M +    
Sbjct: 148 NCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGAS 207

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------- 417
            +  ++ +V S CA    LE G +  A V+   L  + I+ T+L++ Y KC         
Sbjct: 208 PNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQ-NVIVHTALMEMYVKCRAIDEARRE 266

Query: 418 -----------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                            GY       ++L LF  M+ T  KP  +T   +LSAC   G  
Sbjct: 267 FDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 326

Query: 454 KEGQKWFDAMKWQYHIDPEIEHY-SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           + G++    ++ Q    P   +  S ++D++ + G +  A ++  +M  +  +  W+S++
Sbjct: 327 ELGEQIGSYIESQ--TLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIA-WNSMI 383

Query: 513 RGCVAHG 519
           RG   +G
Sbjct: 384 RGLALNG 390


>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
          Length = 788

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 189/620 (30%), Positives = 317/620 (51%), Gaps = 65/620 (10%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 137 KACGALQWRGFGRGVHGYVAKSG-LDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 195

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++L   M ++      + +S    A A++  +E GKQ H+ 
Sbjct: 196 VAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKQSHAL 255

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNGL+ D++LG+S++N Y K G    A  V + M   D    + LISGY   G + DA
Sbjct: 256 AVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTWNLLISGYVQQGLVEDA 315

Query: 191 RRV----------FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
            R+          FD  T  S++M  +  +      ++ +   + H    + VL  AST 
Sbjct: 316 IRMCKLMRLEKLKFDCVT-LSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVL--ASTA 372

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
             + + C   G +   K+V        V  D+I+ + LL  Y++ G+  +A +LF E+++
Sbjct: 373 VDMYAKC---GSIVDAKKVFDST----VQKDLILWNTLLAAYAESGLSGEALRLFYEMQL 425

Query: 301 Y----DTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLISWNSMIVGLSQNGSPIE 352
                + I  N +I      G++++AK +F  M +     +++SW +M+ GL QNG   E
Sbjct: 426 ESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPTIVSWTTMMNGLVQNGCSEE 485

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLV 411
           A+     M +  +R + FS+   +SACAN++SL  G  V   +    L S  + I TSLV
Sbjct: 486 AIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLV 545

Query: 412 DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
           D Y KCG                                  +A+AL+  + + G+KP  I
Sbjct: 546 DMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAMALYRSLDDMGIKPDNI 605

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TFT ILSAC+H G + +  + F  M  ++ + P +EHY  MVDL A AG   +A+ L+E+
Sbjct: 606 TFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLASAGETEKALRLMEE 665

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MP+E D  M  S+L  C       L   ++++++E +P+N+  Y+ +S+ +A  G W++ 
Sbjct: 666 MPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPDNSGNYVTISNAYAVEGSWDEV 725

Query: 559 SLIRDIMREKHVGKLPGCSW 578
             +R++M+ K + K PGCSW
Sbjct: 726 VKMREMMKAKGLKKQPGCSW 745



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 154/667 (23%), Positives = 274/667 (41%), Gaps = 154/667 (23%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C      H G+Q+H   LK G        I  +L+  Y +C     A +LF ++
Sbjct: 30  GEILQGCVYERDFHTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEIAEVLFSKL 89

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE---YG 124
             RN FSW A+I    ++G  E +L  F  M +   F  N ++    KA   AL+   +G
Sbjct: 90  RVRNVFSWAAIIGVKCRMGLVEGALMGFVEMLKDEIFPDNFVVPNVCKA-CGALQWRGFG 148

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           + +H ++  +GLD    + SSL ++YGKCG  + A +V + + E +    +AL       
Sbjct: 149 RGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNAL------- 201

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                                   + GY+ N  + EA+ L   MR  GV     T+++ L
Sbjct: 202 ------------------------MVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCL 237

Query: 245 SACSSLGFLEHGKQVHGHA-------------------CKVGVID------------DVI 273
           SA +++G +E GKQ H  A                   CKVG+++            DV+
Sbjct: 238 SASANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVV 297

Query: 274 VASALLDTYSKRGMPSDA---CKLF----------------------------SELKVY- 301
             + L+  Y ++G+  DA   CKL                              E++ Y 
Sbjct: 298 TWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYC 357

Query: 302 -------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                  D +L +T + +Y+ CG I DAK +F +   K LI WN+++   +++G   EAL
Sbjct: 358 IRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEAL 417

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LF  M    +  +  +   +I +      ++  +++F ++   G+    +  T++++  
Sbjct: 418 RLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPTIVSWTTMMNGL 477

Query: 415 CK--CGYDALALFNEMRNTGVKPTIITFTAILSACDH----------------------- 449
            +  C  +A+    +M+  G++P + + T  LSAC +                       
Sbjct: 478 VQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSS 537

Query: 450 -------------CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL- 495
                        CG + + +K F     +  +  E+  Y+ M+  +A  G + EA+ L 
Sbjct: 538 VSIETSLVDMYAKCGDISKAEKVF-----RRKLFSELPLYNAMISAYALYGNVEEAMALY 592

Query: 496 --IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA--YIQLSSIFAT 551
             ++ M  + D   +++IL  C   GD     ++   M+       C   Y  +  + A+
Sbjct: 593 RSLDDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLAS 652

Query: 552 SGEWEKS 558
           +GE EK+
Sbjct: 653 AGETEKA 659



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 152/385 (39%), Gaps = 70/385 (18%)

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N E  EAL L  +M    V         +L  C        G+Q+H    K G       
Sbjct: 4   NGEIKEALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNG------- 56

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
                D Y+K                 +  +   ++  Y+ C  +E A+ +F  +  +++
Sbjct: 57  -----DFYAK-----------------NEYIETKLVIFYAKCDALEIAEVLFSKLRVRNV 94

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
            SW ++I    + G    AL  F  M K ++  D F + +V  AC  +     G  V   
Sbjct: 95  FSWAAIIGVKCRMGLVEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGY 154

Query: 395 VTIIGLDSDQIISTSLVDFYCKCGY--DALALFNE------------------------- 427
           V   GLD    +++SL D Y KCG   DA  +F+E                         
Sbjct: 155 VAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEA 214

Query: 428 ------MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
                 MR  GV+PT +T +  LSA  + G V+EG K   A+     ++ +    + +++
Sbjct: 215 IRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEG-KQSHALAVVNGLELDNILGTSVLN 273

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
            + + G +  A  + ++M    DV  W+ ++ G V  G      + A RM +L       
Sbjct: 274 FYCKVGLVEYAEMVFDRM-VGKDVVTWNLLISGYVQQGLV----EDAIRMCKLMRLEKLK 328

Query: 542 Y--IQLSSIFATSGEWEKSSLIRDI 564
           +  + LS++ +T+   + S L +++
Sbjct: 329 FDCVTLSTLMSTAARTQNSKLGKEV 353



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 25/188 (13%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++  + +S++ I   L+ MY +CG+ + A  +F    RR 
Sbjct: 509 LSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVF----RRK 564

Query: 72  CFS----WNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADL-AA 120
            FS    +NAMI  +   G+ E+++ L+       + P    F+ N+L +     D+  A
Sbjct: 565 LFSELPLYNAMISAYALYGNVEEAMALYRSLDDMGIKPDNITFT-NILSACNHAGDINQA 623

Query: 121 LE-YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
           +E +   +  H +   L+   +    +V+L    G+   A +++  M  EPD   + +L+
Sbjct: 624 IEIFSDMVSKHGVKPCLEHYGL----MVDLLASAGETEKALRLMEEMPYEPDARMIQSLL 679

Query: 179 SGYANCGK 186
              A C K
Sbjct: 680 ---ATCNK 684



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 47/216 (21%)

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG--LD 401
           L +NG   EAL L   M+  ++R+       ++  C        G+Q+ AR+   G    
Sbjct: 1   LCKNGEIKEALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNGDFYA 60

Query: 402 SDQIISTSLVDFYCKCGYDAL----ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
            ++ I T LV FY KC  DAL     LF+++R   V     ++ AI+      GLV+   
Sbjct: 61  KNEYIETKLVIFYAKC--DALEIAEVLFSKLRVRNV----FSWAAIIGVKCRMGLVEGAL 114

Query: 458 KWF----------------------DAMKW------------QYHIDPEIEHYSCMVDLF 483
             F                       A++W            +  +D  +   S + D++
Sbjct: 115 MGFVEMLKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMY 174

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            + G L++A  + +++P E +V  W++++ G V +G
Sbjct: 175 GKCGVLDDARKVFDEIP-ERNVVAWNALMVGYVQNG 209


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 198/623 (31%), Positives = 302/623 (48%), Gaps = 99/623 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL        +  GK LH  ++K  + +ST  ++N  + +Y +CG  + A   FD     
Sbjct: 14  LLLKSVAERDLFTGKSLHALYVKSIVASSTY-LSNHFVNLYSKCGCLSYARAAFDSTEEP 72

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           N FS+N +++ + K      + QLF+  PQ +  S+N LISG+A A   +AA+   K++ 
Sbjct: 73  NVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMR 132

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-----------AL 177
                  L F+ V G +L  L   C D       ++++K+   F +S           A 
Sbjct: 133 E------LGFE-VDGFTLSGLIAACCD------RVDLIKQLHCFAVSGGFDSYSSVNNAF 179

Query: 178 ISGYANCGKMNDARRVF---DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           ++ Y+  G + +A  VF   D   D   V WNSMI  Y  + E  +AL L+ +M   G  
Sbjct: 180 VTYYSKGGLLREAVSVFYGMDGLRD--EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFK 237

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D  TLASVL+A +SL  L  G+Q HG   K G   +  V S L+D YSK G        
Sbjct: 238 IDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCG-------- 289

Query: 295 FSELKVYDTILLNTMITVYSSCGR--IEDAKHIFRTMPNKSLISWNSMIVGLSQNGS-PI 351
                                 GR  + D++ +F+ + +  L+ WN+MI G S N     
Sbjct: 290 ----------------------GRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSE 327

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSL 410
           EA+  F  M ++  R D  S   V SAC+N+SS   G+Q+        + S++I ++ +L
Sbjct: 328 EAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNAL 387

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           +  Y K G                                  +AL L+  M ++G+ P  
Sbjct: 388 ISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNN 447

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           ITF AILSAC HCG V EGQK+F+ MK  + I+PE EHYSCM+DL  RAG L EA   I+
Sbjct: 448 ITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFID 507

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
            MP++     W+++L  C  H +  L  + A+ ++ + P  A  Y+ L++++A +G+WE+
Sbjct: 508 AMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEE 567

Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
            + +R  MR K + K PGCSW +
Sbjct: 568 MASVRKSMRGKRIRKKPGCSWIE 590


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 181/598 (30%), Positives = 284/598 (47%), Gaps = 102/598 (17%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           SI  G+Q H   +K         + + LL MY + G   +A  +FD MP RN  +W  MI
Sbjct: 126 SIFFGQQAHAVAIKMACFYDVF-VGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMI 184

Query: 80  EGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
            G+       ++ ++F +M ++    N+F++  ++S  A  +   ++ GKQIH   +  G
Sbjct: 185 SGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEF--VDSGKQIHCLAVKTG 242

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
           L         LV L            +LN           AL++ YA CG ++D+ +VF+
Sbjct: 243 L---------LVFL-----------SILN-----------ALVTMYAKCGSLDDSLQVFE 271

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
            + D +S+ W++MI+GY  + +  +AL LF +M   G+     TL  VL+ACS    +E 
Sbjct: 272 MSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEE 331

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           GKQVH +  K+G    + + +AL+D Y+K                               
Sbjct: 332 GKQVHNYLLKLGFESQLYIMTALVDMYAKS------------------------------ 361

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
            G  EDA+  F  +    L+ W SMI G  QNG   +AL L+C M    +  ++ ++ASV
Sbjct: 362 -GVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASV 420

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------- 418
           + AC+N+++ + G Q+ AR    GL  +  I ++L   Y KCG                 
Sbjct: 421 LKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDI 480

Query: 419 ----------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                            +AL LF EMR    KP  +TF  +LSAC H GLV  G  +F  
Sbjct: 481 ISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRM 540

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           M  ++ + P++EHY+CMVD+ +RAG L EA   IE    +  + +W  +L  C  + +  
Sbjct: 541 MFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYE 600

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           LG    E+++EL  + + AY+ LS I+   G  E    +R +M+ + V K PGCSW +
Sbjct: 601 LGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIE 658



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 147/561 (26%), Positives = 250/561 (44%), Gaps = 106/561 (18%)

Query: 17  THH-SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW 75
           TH  S+  G+ LH   +K    +S + +AN L+  Y +C +   A L+FD +  ++  SW
Sbjct: 18  THQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISW 77

Query: 76  NAMIEGFMKLGHKEKS--LQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIHSHI 131
           N +I G+ + G    S  ++LF  M   N        SG   A ++L+++ +G+Q H+  
Sbjct: 78  NCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVA 137

Query: 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
           +     +D  +GSSL+N+Y K                                G + +AR
Sbjct: 138 IKMACFYDVFVGSSLLNMYCKA-------------------------------GLLFEAR 166

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA--SVLSACSS 249
            VFDR  + + V W +MISGY       EA  +F  MRR    ED +  A  SVLSA + 
Sbjct: 167 EVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREE--EDVNEFAFTSVLSALAV 224

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
             F++ GKQ+H  A K G++  + + +AL+  Y+K G   D+ ++F      ++I  + M
Sbjct: 225 PEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAM 284

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT                               G +Q+G   +AL LF  M+   +   +
Sbjct: 285 IT-------------------------------GYAQSGDSHKALKLFSRMHFAGINPSE 313

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------- 419
           F+L  V++AC++  ++E G+QV   +  +G +S   I T+LVD Y K G           
Sbjct: 314 FTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNY 373

Query: 420 -----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  DAL+L+  M+  G+ P  +T  ++L AC +     +G
Sbjct: 374 LQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQG 433

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
           ++   A   +Y +  E+   S +  ++A+ G L E   +  +MP E D+  W++++ G  
Sbjct: 434 RQ-IHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMP-ERDIISWNAMISGLS 491

Query: 517 AHGDKGLGRKVAERMIELDPE 537
            +G      ++ E M + D +
Sbjct: 492 QNGYGKEALELFEEMRQQDTK 512



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 116/251 (46%), Gaps = 34/251 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+   ++  GKQ+H + LK G   S L I   L+ MY + G   DA   F+ +
Sbjct: 316 LVGVLNACSDACAVEEGKQVHNYLLKLG-FESQLYIMTALVDMYAKSGVTEDARKGFNYL 374

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
            + +   W +MI G+++ G  E +L L+  M  +      + ++   KA  +LAA + G+
Sbjct: 375 QQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGR 434

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+  +  GL  +  +GS+L  +Y KCG+    N V   M E D    +A+ISG +   
Sbjct: 435 QIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQ-- 492

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                                        N    EAL LF +MR+     D  T  +VLS
Sbjct: 493 -----------------------------NGYGKEALELFEEMRQQDTKPDDVTFVNVLS 523

Query: 246 ACSSLGFLEHG 256
           ACS +G ++ G
Sbjct: 524 ACSHMGLVDSG 534


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 187/608 (30%), Positives = 292/608 (48%), Gaps = 80/608 (13%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+SC     + +G QLH H LK       + +    L MY +C N  DA +LFD   
Sbjct: 285 ASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDNSE 343

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQ 126
             N  S+NAMI G+ +  H  K+L LF+ +         + +SG   A A +  L  G Q
Sbjct: 344 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 403

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           I+   + + L  D  + ++ +++YGK                               C  
Sbjct: 404 IYGLAIKSSLSLDVCVANAAIDMYGK-------------------------------CQA 432

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +A RVFD      +V WN++I+ +  N +  E L LF  M R+ +  D  T  S+L A
Sbjct: 433 LAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKA 492

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+  G L +G ++H    K G+  +  V  +L+D YSK GM  +A K+ S       +  
Sbjct: 493 CTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANV-- 549

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                     G +E+ + +      +  +SWNS+I G        +A  LF  M ++ + 
Sbjct: 550 ---------SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGIT 600

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            DKF+ A+V+  CAN++S  LG+Q+ A+V    L SD  I ++LVD Y KCG        
Sbjct: 601 PDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLM 660

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +A+ LF  M    +KP  +TF +IL AC H GL+
Sbjct: 661 FEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLI 720

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G ++F  MK  Y +DP++ HYS MVD+  ++G +  A+ LI +MPFEAD  +W ++L 
Sbjct: 721 DKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 780

Query: 514 GCVAHGDK-GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            C  H +   +  +    ++ LDP+++ AY  LS+++A +G WEK S +R  MR   + K
Sbjct: 781 VCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKK 840

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 841 EPGCSWVE 848



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 152/595 (25%), Positives = 252/595 (42%), Gaps = 122/595 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + + C    ++ +GKQ H H +  G   +T  + N LLQ+Y    +   A ++FD+MP R
Sbjct: 54  VFKECAKQGALELGKQAHAHMIISGFRPTTF-VLNCLLQVYTNSRDFVSASMVFDKMPLR 112

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS- 129
           +  SWN MI G+ K     K+   FN+MP ++  SWN ++SG+       L+ G+ + S 
Sbjct: 113 DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGY-------LQNGESLKSI 165

Query: 130 HILVN----GLDFDSVLGSSLVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALISGY 181
            + V+    G++FD    + ++ +     D +   Q    V+ +  + D    SAL+  Y
Sbjct: 166 EVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMY 225

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           A   +  ++ RVF    + +SV W+++I+G + NN  + AL  F +M++       S  A
Sbjct: 226 AKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYA 285

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           SVL +C++L  L  G Q+H HA K     D IV +A LD Y+K                 
Sbjct: 286 SVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK----------------- 328

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                         C  ++DA+ +F    N +  S+N+MI G SQ     +AL LF  + 
Sbjct: 329 --------------CDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLM 374

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---- 417
              L  D+ SL+ V  ACA +  L  G Q++       L  D  ++ + +D Y KC    
Sbjct: 375 SSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALA 434

Query: 418 -----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACD 448
                                        GY+ L LF  M  + ++P   TF +IL AC 
Sbjct: 435 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT 494

Query: 449 ----------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
                     H  +VK G     ++               ++D++++ G + EA  +  +
Sbjct: 495 GGSLGYGMEIHSSIVKSGMASNSSVG------------CSLIDMYSKCGMIEEAEKIHSR 542

Query: 499 MPFEADVG-------------------MWSSILRGCVAHGDKGLGRKVAERMIEL 534
               A+V                     W+SI+ G V        + +  RM+E+
Sbjct: 543 FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEM 597



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 133/579 (22%), Positives = 247/579 (42%), Gaps = 119/579 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L+ C+      +G Q+H   ++ G  ++ +  A+ LL MY +     ++L +F  +
Sbjct: 183 FAIILKVCSFLEDTSLGMQIHGIVVRVGC-DTDVVAASALLDMYAKGKRFVESLRVFQGI 241

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
           P +N  SW+A+I G ++      +L+ F  M + N      + +   +  A L+ L  G 
Sbjct: 242 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGG 301

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H+H L +    D ++ ++ +++Y K                               C 
Sbjct: 302 QLHAHALKSDFAADGIVRTATLDMYAK-------------------------------CD 330

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            M DA+ +FD + + +   +N+MI+GY       +ALLLFH++  +G+  D  +L+ V  
Sbjct: 331 NMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFR 390

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ +  L  G Q++G A K  +  DV VA+A +D Y K    ++A ++F E++  D   
Sbjct: 391 ACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDA-- 448

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                        +SWN++I    QNG   E L LF +M +  +
Sbjct: 449 -----------------------------VSWNAIIAAHEQNGKGYETLFLFVSMLRSRI 479

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             D+F+  S++ AC    SL  G ++ + +   G+ S+  +  SL+D Y KCG       
Sbjct: 480 EPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 538

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM---- 463
                         +    +M N  ++   +++ +I+S        ++ Q  F  M    
Sbjct: 539 IHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMG 598

Query: 464 ----KWQYH----------------------IDPEIEH--YSC--MVDLFARAGCLNEAV 493
               K+ Y                       I  E++   Y C  +VD++++ G L+++ 
Sbjct: 599 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR 658

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
            + E+     D   W++++ G   HG      ++ ERMI
Sbjct: 659 LMFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMI 696


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 183/676 (27%), Positives = 309/676 (45%), Gaps = 137/676 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L++C    +   G+Q+H    K G L++ + +   L+ +Y + G    A+ +FD +
Sbjct: 140 LASALRACAQSRAARFGEQVHGVAAKLG-LDANVFVGTALVNLYAKAGRIDAAMSVFDAL 198

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
           P RN  +W A+I G+ + G    +L+LF  M          +++  A A   L  +E G+
Sbjct: 199 PARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGR 258

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH +      + D+ + ++L++LY K                               C 
Sbjct: 259 QIHGYAYRTAAESDASVVNALIDLYCK-------------------------------CS 287

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++  ARR+FD   + + V W +MI+GY+ N+ DTEA+ +F ++ + G   D     S+L+
Sbjct: 288 RLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILN 347

Query: 246 ACSSLGFLEHGKQVHGHACKVGVI-------------------------------DDVIV 274
           +C SL  +  G+QVH H  K  +                                DD I 
Sbjct: 348 SCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAIS 407

Query: 275 ASALLDTYSKRGMPSDACKLFSELKV---------------------------------- 300
            +A+++ Y++ G  + A ++F +++                                   
Sbjct: 408 YNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIV 467

Query: 301 -----YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                 D    + +I VYS    ++DAK +F  M N+ ++ WN+MI GL+QN    EA+ 
Sbjct: 468 KSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVK 527

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  +    L  ++F+  ++++  + ++S+  G+Q  A++   G DSD  IS +L+D Y 
Sbjct: 528 LFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYA 587

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG+                                 +AL +F  M   GV+P  +TF +
Sbjct: 588 KCGFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVS 647

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H GLV EG   F++MK +Y ++P  EHY+ +V+LF R+G L+ A   IE+MP E
Sbjct: 648 VLSACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIE 707

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W S+L  C   G+  +GR   E  +  DP ++   + +S+I+A+ G W  +  +R
Sbjct: 708 PVATIWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLR 767

Query: 563 DIMREKHVGKLPGCSW 578
             M    V K PG SW
Sbjct: 768 QGMDCAGVVKEPGYSW 783



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 149/557 (26%), Positives = 253/557 (45%), Gaps = 108/557 (19%)

Query: 8   LARLLQSCNTHHSIH-VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           LA+LL SC     +  V    H   +  G+L   L +AN LL+ Y + G   DA  LFD 
Sbjct: 32  LAQLLLSCLAGDRLRRVLPPAHARAVVSGLL-PDLFLANLLLRGYSKLGRLGDARRLFDS 90

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-------MLISGF-AKADL 118
           MP RN  SW + I  + + G ++ +L LF   P     S +       +L S   A A  
Sbjct: 91  MPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQS 150

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            A  +G+Q+H      GLD +  +G++LVNLY K G  ++A  V + +   +    +A+I
Sbjct: 151 RAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVI 210

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           +GY+  G+                                  AL LF +M  +GV  D  
Sbjct: 211 TGYSQAGQAG-------------------------------VALELFGRMGLDGVRPDRF 239

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
            LAS  SACS LGF+E G+Q+HG+A +     D  V +AL+D Y         CK     
Sbjct: 240 VLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLY---------CK----- 285

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            C R+  A+ +F +M N++L+SW +MI G  QN    EA+ +F 
Sbjct: 286 -----------------CSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFW 328

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC- 417
            +++   + D F+  S++++C +++++  G QV A V    L+SD+ +  +L+D Y KC 
Sbjct: 329 QLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCE 388

Query: 418 -------------------------GY-------DALALFNEMRNTGVKPTIITFTAILS 445
                                    GY        A+ +F +MR   +KP+++TF ++L 
Sbjct: 389 HLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLG 448

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
                  + E  K    +  +     ++   S ++D++++   +++A  L+  +    D+
Sbjct: 449 VSSSRSDL-ELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDA-KLVFSLMQNRDM 506

Query: 506 GMWSSILRGCVAHGDKG 522
            +W++++ G +A  ++G
Sbjct: 507 VIWNAMIFG-LAQNERG 522


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  285 bits (730), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 189/687 (27%), Positives = 348/687 (50%), Gaps = 80/687 (11%)

Query: 36  ILNSTLPIA-NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           ++ +  P A + +++ +++ G+   A  LFD MP R+  S+  M++  MK G    +++L
Sbjct: 142 VVGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVEL 201

Query: 95  FNVMPQKNDFSWNMLISGFAKADLAA---------LEYGKQIHSHILVNGL-------DF 138
           +   P  +   +  +I+GF   +L           L  G   +   LV+ +       +F
Sbjct: 202 YRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEF 261

Query: 139 D---SVLG---------------SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           D   S++G               +SL+ LY + GD ++A ++ + M+  D    +AL+  
Sbjct: 262 DLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA  G +  ARRV D   + + V W ++++ +       EA+ L+ +M  +G   + S  
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SVL AC+SL  L  G+++H    K+   ++V V+SAL+D Y K     DA  +F  L  
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQ 441

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + +  N++I+ YS+  ++ +A+ +F+ MP +++ SWNS+I G +QN   I+AL  F  M
Sbjct: 442 KNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAM 501

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                   + + +SV+ ACA++ SLE+G+ V A++  +G+     + T+L D Y K G  
Sbjct: 502 LASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDL 561

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +++ LF +M + G+ P   TF AIL AC
Sbjct: 562 DSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFAC 621

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV+    +F+ M+    I P+ +HY+CMVD+ ARAG L EA +L+ ++  +++   
Sbjct: 622 SHSGLVEHAMHYFEMMQ-ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANS 680

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W+++L  C  + +K +G + A+R+ ELD +N   Y+ LS+++A+ G+W+ ++ +R +M+ 
Sbjct: 681 WAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKG 740

Query: 568 KHVGKLPGCSWA-------DGIAFNCWFLDTMFLQLAN--FDEIKQHQSADFCDYIHGFD 618
            ++ K  GCSW          I    + + T+   L N     + ++ + D+C    G +
Sbjct: 741 INLKKDGGCSWVQIRDEQLQKIQLCIYCIVTILTCLLNLVLPPLIRNSNEDYCKRCPGCE 800

Query: 619 QARLPLSSKRSFVLG--YLLSTLSLKV 643
             +  L  + + V+   Y LS ++++V
Sbjct: 801 NPKHELCYELALVITFEYELSGVTVEV 827



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 213/450 (47%), Gaps = 65/450 (14%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           +K  +L+  L + N L+ +Y+R G+   A  +FDEM  R+  SW A+++ + +LG  E +
Sbjct: 272 MKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331

Query: 92  LQLFNVMPQKNDFSWNMLIS-----GFAK----------------------------ADL 118
            ++ + MP++N+ SW  L++     G AK                            A L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G++IH+  L      +  + S+L+++Y KC     A  +   + + +  C ++LI
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           SGY+N  KM +A  +F +    +   WNS+ISGY  N +  +AL  FH M  +G      
Sbjct: 452 SGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEI 511

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T +SVL AC+SL  LE GK VH    K+G+ + + V +AL D Y+K              
Sbjct: 512 TFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKS------------- 558

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF 
Sbjct: 559 ------------------GDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFE 600

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           +M    +  ++ +  +++ AC++   +E     F  +   G+       T +VD   + G
Sbjct: 601 DMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAG 660

Query: 419 YDALALFNEMRNTGVKPTIITFTAILSACD 448
           + A A  + +     K    ++ A+LSAC+
Sbjct: 661 HLAEAE-DLLLKIESKSEANSWAALLSACN 689



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 208/497 (41%), Gaps = 110/497 (22%)

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKC-------GDFNSANQVLNMMKEPDDFCLSALIS 179
           IH+H LV+GL  D  + S L+  Y          G F     V+        F    ++ 
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVG---AASPFAYDFMVR 156

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNS-------------------------------M 208
            +   G +  ARR+FD   + S V + +                               M
Sbjct: 157 EHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAM 216

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           I+G++ N    +AL +FH+M   GV  +  TL SV+ AC   G  +    + G A K  +
Sbjct: 217 IAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNL 276

Query: 269 ID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
           +D ++ V ++L+  Y ++G    A ++F E++V D +    ++ VY+  G +E A+ +  
Sbjct: 277 LDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLD 336

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
            MP ++ +SW +++    Q G+  EA+ L+  M     R +    +SV+ ACA++  L  
Sbjct: 337 EMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRS 396

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------------------GY-- 419
           G ++  +   +   ++  +S++L+D YCKC                          GY  
Sbjct: 397 GRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSN 456

Query: 420 -----DALALFNEM--RN-----------------------------TGVKPTIITFTAI 443
                +A  LF +M  RN                             +G  P  ITF+++
Sbjct: 457 NSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSV 516

Query: 444 LSACDH-CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           L AC   C L  E  K   A   +  I   I   + + D++A++G L+ +  +  +MP  
Sbjct: 517 LLACASLCSL--EMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKR 574

Query: 503 ADVGMWSSILRGCVAHG 519
            DV  W+++++G   +G
Sbjct: 575 NDVA-WTAMIQGLAENG 590


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  285 bits (730), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 184/584 (31%), Positives = 289/584 (49%), Gaps = 83/584 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-R 69
           +L+ C+ +  +  GKQ+H H +K    +S   +   L+ MY +C    +A  LF+  P +
Sbjct: 144 VLRVCSMYVLLEKGKQIHAHAIKTQ-FDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDK 202

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGK 125
           RN   W AM+ G+ + G   K+++ F  M  +    N F++  +++  A   ++A  +G 
Sbjct: 203 RNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILT--ACGSISACGFGA 260

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H  I+ +G   +  +GS+LV++Y K                               CG
Sbjct: 261 QVHGCIVRSGFGANVFVGSALVDMYSK-------------------------------CG 289

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            +++ARR+ +       V WNSMI G +      EAL LF  M    +  D  T  SVL+
Sbjct: 290 DLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLN 349

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
             S +  + +   VH    K G     +V +AL+D Y+KRG                   
Sbjct: 350 CFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGY------------------ 391

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                         + A  +F  M +K +ISW S++ G   NGS  EAL LFC M  + +
Sbjct: 392 -------------FDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGI 438

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALA 423
             D+  +A+V+SACA ++ LE G+QV A     GL S   +  SLV  Y KCG   DA  
Sbjct: 439 HPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANK 498

Query: 424 LFNEMRNTGVKPTIITFTAIL-------SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
           +F+ M    V    IT+TA++          DH GLV+ G+ +F +M+  Y I P  EHY
Sbjct: 499 VFDSMEIQDV----ITWTALIVGYAQNGRGRDHAGLVEHGRSYFQSMEEVYGIKPGPEHY 554

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
           +CM+DL  R+G L EA  L+ QM  + D  +W ++L  C  HG+  LG + A  + EL+P
Sbjct: 555 ACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEP 614

Query: 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +NA  Y+ LS++++ +G+WE+++  R +M+ + V K PGCSW +
Sbjct: 615 KNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIE 658



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 191/403 (47%), Gaps = 69/403 (17%)

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           KCG  + A ++ ++M + D+   + +I  YAN G++N+AR++F  T   S + W+S+ISG
Sbjct: 53  KCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISG 112

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           Y     D EAL LF +M+  G   +  T  SVL  CS    LE GKQ+H HA K     +
Sbjct: 113 YCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSN 172

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
             V + L+D Y+K                               C  I +A+++F   P+
Sbjct: 173 AFVVTGLVDMYAK-------------------------------CKCILEAEYLFELAPD 201

Query: 332 K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
           K + + W +M+ G SQNG   +A++ F +M    +  ++F+  S+++AC +IS+   G Q
Sbjct: 202 KRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQ 261

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
           V   +   G  ++  + ++LVD Y KCG   L+    M  T      +++ +++  C   
Sbjct: 262 VHGCIVRSGFGANVFVGSALVDMYSKCG--DLSNARRMLETMEVDDPVSWNSMIVGCVRQ 319

Query: 451 GLVKEGQKWFDAMKWQY-HID----PEI-------------------------EHY---- 476
           GL +E    F  M  ++  ID    P +                         E Y    
Sbjct: 320 GLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVN 379

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           + +VD++A+ G  + A ++ E+M  + DV  W+S++ GCV +G
Sbjct: 380 NALVDMYAKRGYFDYAFDVFEKMT-DKDVISWTSLVTGCVHNG 421



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 135/307 (43%), Gaps = 36/307 (11%)

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C  L   E    +       G +     ++ +L   SK G   DA KLF  +   D    
Sbjct: 16  CHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSW 75

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           NTMI  Y++ GR+ +A+ +F   P +S I+W+S+I G  + G  +EAL+LF  M     R
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------- 417
            ++F+  SV+  C+    LE G+Q+ A       DS+  + T LVD Y KC         
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 418 -------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                    G+ A+  F +MR  G++    TF +IL+AC     
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
              G +    +  +      +   S +VD++++ G L+ A  ++E M  +  V  W+S++
Sbjct: 256 CGFGAQVHGCIV-RSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVS-WNSMI 313

Query: 513 RGCVAHG 519
            GCV  G
Sbjct: 314 VGCVRQG 320



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 29/175 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C     +  GKQ+H +FLK G L S+L + N L+ MY +CG   DA  +FD M
Sbjct: 445 IAAVLSACAELTVLEFGKQVHANFLKSG-LGSSLSVDNSLVSMYAKCGCIEDANKVFDSM 503

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ- 126
             ++  +W A+I G+ +                          +G  +     +E+G+  
Sbjct: 504 EIQDVITWTALIVGYAQ--------------------------NGRGRDHAGLVEHGRSY 537

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
             S   V G+       + +++L G+ G    A ++LN M  +PD     AL++ 
Sbjct: 538 FQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAA 592


>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 656

 Score =  285 bits (730), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 193/642 (30%), Positives = 298/642 (46%), Gaps = 83/642 (12%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI--------ANRLLQMYMRCGNPTDA 60
           A L + C+  H +    Q+H  F+  G+L              A+RLL +         +
Sbjct: 9   AHLARCCSARHLL----QIHAQFIASGLLADAFAASRLLLFTSASRLLPLPFH-----HS 59

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA 120
           L L   +   N FS N +++  +  G     L L+  +P   D S+   I   A A    
Sbjct: 60  LRLLRLVRYPNAFSCNTLLKSALIGGMPHLCLPLYASLPAPPD-SYTHPILAAACASRKD 118

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG-------------------------- 154
           +  G+Q+H+H + +G   +  L ++L+ +Y  CG                          
Sbjct: 119 VIEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRVFDAGPVWDAVSWNTILAA 178

Query: 155 -----DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
                D + A +V   M + +   +S+++S +   G +++ARRVFD         W +MI
Sbjct: 179 YVHAGDVDQAVEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMI 238

Query: 210 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
           S +  N+   EAL +F  MRR     D   + SV+SAC+    +++G+  HG   + G+ 
Sbjct: 239 SCFERNDMFAEALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLC 298

Query: 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
             V V +AL+  YS       A +LF   +  D    N+MI  Y   G ++DA  +F  M
Sbjct: 299 SQVNVQNALIHMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAM 358

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PNK  +SW+++I G  QN    +AL +F NM    +R D+ ++ SVISAC N+S+LE G+
Sbjct: 359 PNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGK 418

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVK------------- 434
            V   +         ++ TSL++ Y KCG    AL  FN M   G               
Sbjct: 419 SVHEYIKQNQYYVSLVLGTSLINMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNG 478

Query: 435 -------------------PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
                              P  ITFT +LSAC H GLV EG+ +F  M+ +Y I P I H
Sbjct: 479 LVMKSLDMFSEMEASDTATPNEITFTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRH 538

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y CMVDL  RAG + EA ++I+ MP   DV  W ++L  C  HG+  +G +V  +++  D
Sbjct: 539 YGCMVDLLGRAGYVKEAEDMIQSMPMSPDVPAWGALLGACWKHGEYEVGERVGRKLVNRD 598

Query: 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           P +      LS+I+A  G W+    +R  M+++HV K+ G S
Sbjct: 599 PLHDGFQTMLSNIYAKEGMWQSVDDLRGSMKQRHVQKVSGHS 640



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 122/285 (42%), Gaps = 66/285 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C     I  G+  H   ++ G L S + + N L+ MY  C +   A  LFD  
Sbjct: 269 MVSVVSACAQSEVIQNGQMCHGLVIRAG-LCSQVNVQNALIHMYSSCLDVFAARRLFDSG 327

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
              + +SWN+MI G++K GH + ++ LF+ MP K++ SW+ +ISG  +            
Sbjct: 328 ECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFD 387

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                 +L+ALE GK +H +I  N      VLG+SL+N+Y KCG
Sbjct: 388 NMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCG 447

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
              +A +  N+M+E    C                               WN++I G   
Sbjct: 448 CLEAALEAFNIMEEKGTPC-------------------------------WNAVIVGLAM 476

Query: 215 NNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           N    ++L +F +M   +    +  T   VLSAC   G ++ G+ 
Sbjct: 477 NGLVMKSLDMFSEMEASDTATPNEITFTGVLSACRHAGLVDEGRH 521


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  285 bits (730), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 180/610 (29%), Positives = 299/610 (49%), Gaps = 111/610 (18%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           +S ++  S+H G+QLH   LK G       + N L+  Y++      A  +FDEM     
Sbjct: 52  KSFSSLRSVHGGEQLHGFILKSG-FGERNSVGNSLVAFYLKNQRVDSARKVFDEMT---- 106

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
                                      +++  SWN +I+G+    LA  E G  +   +L
Sbjct: 107 ---------------------------ERDVISWNSIINGYVSNGLA--EKGLSVFVQML 137

Query: 133 VNGLDFDSVLGSSLVNLYGKCGD-----FNSANQVLNM---MKEPDDFCLSALISGYANC 184
           V+G++ D    +++V+++  C D        A   + +       D FC + L+  Y+ C
Sbjct: 138 VSGIEIDL---ATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC-NTLLDMYSKC 193

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G ++ A+ VF   +D S V + SMI+GY       EA+ LF +M   G+  D  T+ +VL
Sbjct: 194 GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 253

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           + C+    L+ GK+VH    +  +  D+ V++AL+D                        
Sbjct: 254 NCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD------------------------ 289

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF-CNMNKL 363
                  +Y+ CG +++A+ +F  M  K +ISWN++I G S+N    EAL LF   + + 
Sbjct: 290 -------MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK 342

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
               D+ ++A V+ ACA++S+ + G ++   +   G  SD+ ++ SLVD Y KCG     
Sbjct: 343 RFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 402

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +A+ALFN+MR  G++   I+F ++L AC H 
Sbjct: 403 HMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHS 462

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV EG ++F+ M+ +  I+P +EHY+C+VD+ AR G L +A   IE MP   D  +W +
Sbjct: 463 GLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGA 522

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L GC  H D  L  KVAE++ EL+PEN   Y+ +++I+A + +WE+   +R  + ++ +
Sbjct: 523 LLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 582

Query: 571 GKLPGCSWAD 580
            K PGCSW +
Sbjct: 583 RKNPGCSWIE 592



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 214/490 (43%), Gaps = 84/490 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +   C     I +G+ +H     K   +      N LL MY +CG+   A  +F EM
Sbjct: 148 IVSVFAGCADSRLISLGRAVH-SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 206

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             R+  S+ +MI G+ + G   ++++LF  M ++    + ++   +++  A+  L  L+ 
Sbjct: 207 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL--LDE 264

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK++H  I  N L FD  + ++L+++Y KCG    A  V + M+  D      +IS    
Sbjct: 265 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKD------IIS---- 314

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLAS 242
                                WN++I GY  N    EAL LF+ +        D  T+A 
Sbjct: 315 ---------------------WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 353

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL AC+SL   + G+++HG+  + G   D  VA++L+D Y+K                  
Sbjct: 354 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK------------------ 395

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG +  A  +F  + +K L+SW  MI G   +G   EA+ LF  M +
Sbjct: 396 -------------CGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQ 442

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKC 417
             +  D+ S  S++ AC++   ++ G + F     I     +I  T      +VD   + 
Sbjct: 443 AGIEADEISFVSLLYACSHSGLVDEGWRFFN----IMRHECKIEPTVEHYACIVDMLART 498

Query: 418 GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHY 476
           G D +  +  + N  + P    + A+L  C     VK  +K  + +   + ++PE   +Y
Sbjct: 499 G-DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKV---FELEPENTGYY 554

Query: 477 SCMVDLFARA 486
             M +++A A
Sbjct: 555 VLMANIYAEA 564



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 159/330 (48%), Gaps = 18/330 (5%)

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253
           FD      ++ WN +++    + + + ++ LF KM  +GV  D+ T + V  + SSL  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
             G+Q+HG   K G  +   V ++L+  Y K      A K+F E+   D I  N++I  Y
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 314 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-----RMD 368
            S G  E    +F  M    +    + IV +    +    + L   ++ + +     R D
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 369 KF--SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALAL 424
           +F  +L  + S C ++ S    + VF  ++    D   +  TS++  Y + G   +A+ L
Sbjct: 181 RFCNTLLDMYSKCGDLDS---AKAVFREMS----DRSVVSYTSMIAGYAREGLAGEAVKL 233

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F EM   G+ P + T TA+L+ C    L+ EG++  + +K +  +  +I   + ++D++A
Sbjct: 234 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK-ENDLGFDIFVSNALMDMYA 292

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           + G + EA  +  +M  + D+  W++I+ G
Sbjct: 293 KCGSMQEAELVFSEMRVK-DIISWNTIIGG 321


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 193/613 (31%), Positives = 308/613 (50%), Gaps = 88/613 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFDEMP 68
           +LQSC++   +   KQ+  H    G++N   P A+RLL        G+   A L+FD+  
Sbjct: 58  ILQSCSSMFQL---KQIQAHITCTGLMNQIFP-ASRLLAFCALSDSGDIHYAHLIFDQTE 113

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIH 128
             NCF W                               N +I G+ KA+  ++  G    
Sbjct: 114 LPNCFFW-------------------------------NTMIKGYCKANHPSM--GFSFF 140

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK---------EPDDFCLSALIS 179
             ++ N  +FDS    S V     CG F  A +++ M           + D F  + LI 
Sbjct: 141 RQMIRNRAEFDS---GSFVFALKACGQF--AEKIVGMAVHSVIWKRGFDSDLFVQNGLIQ 195

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            Y   G +  AR++FD ++    V W +MI+GY  NN   EA+ LF+ M  + V  +  T
Sbjct: 196 NYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVT 255

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           + ++LSACS  G  E GK +H H  +  +   + + +A+LD Y K G  + A ++F+ ++
Sbjct: 256 MIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNME 315

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             D     +++  Y+  G +  A+ +F  MP ++++SWN+MI G SQN  P+EAL+LF N
Sbjct: 316 RRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHN 375

Query: 360 M-NKLDLRMDKFSLASVISACANISSLELGEQVFA-RVTIIGLDSDQIISTSLVDFYCKC 417
           M + + L   + +L  V+SA   +  LE+G+++    V  IG+    I+  +++D Y KC
Sbjct: 376 MVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKC 435

Query: 418 G---------------------------------YDALALFNEMRNTGVKPTIITFTAIL 444
           G                                   AL LF++M  +G+KP  ITF  +L
Sbjct: 436 GSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVL 495

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           SAC + G V EGQ  F++M+  + ++P+ EHY+CMVDL +R G L EA  LI +MP EA 
Sbjct: 496 SACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEAS 555

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
            G W ++L  C  HG+  + +   E+++ELDPE++  Y  L++I A   +W+   ++R +
Sbjct: 556 EGGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRM 615

Query: 565 MREKHVGKLPGCS 577
           MRE+ V K+PG S
Sbjct: 616 MRERGVKKVPGHS 628



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D L  +L +      + +G+++H + + K  +  +L + N ++ MY +CG+   A  LF 
Sbjct: 387 DTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFH 446

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
            MP +N  SWN+MI  +   GH +K+L LF+ M
Sbjct: 447 SMPEKNLVSWNSMISAYASYGHAKKALTLFDQM 479


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 184/607 (30%), Positives = 289/607 (47%), Gaps = 98/607 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A L +SC    ++ +GK+LH H LK     S + +    L MY +CG   DA  +   MP
Sbjct: 286 ASLFRSCAALSALRLGKELHSHALKSA-FGSDIIVGTATLDMYAKCGRMADAQKVLSSMP 344

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQ 126
           + +  S+NA+I G+ +     ++L+ F ++ +       + +SG   A A +     G+Q
Sbjct: 345 KCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQ 404

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H      GL   S+  S++            AN +L+M               Y  C  
Sbjct: 405 VH------GLAVKSISMSNIC----------VANAILDM---------------YGKCKA 433

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +A  +FD      +V WN++I+    N  + E L  F  M  + +  D  T  SVL A
Sbjct: 434 LAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKA 493

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+    L  G ++H    K G+  D  V +AL+D Y K                      
Sbjct: 494 CAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCK---------------------- 531

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG IE A  I      K+++SWN++I G S      +A   F  M ++ + 
Sbjct: 532 ---------CGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVN 582

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D F+ A+V+  CAN++++ LG+Q+ A++    L SD  I ++LVD Y KCG        
Sbjct: 583 PDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLM 642

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL LF  M+   VKP   TF ++L AC H GLV
Sbjct: 643 FEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLV 702

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G  +FD M  +Y +DP+ EHYSCMVD+  R+G ++EA+NL+++MPFEAD  +W ++L 
Sbjct: 703 DKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLS 762

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  HG+  +  K    +++LDP+++ A + LS+I+A +G W   S +R +MR   + K 
Sbjct: 763 VCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKE 822

Query: 574 PGCSWAD 580
           PGCSW +
Sbjct: 823 PGCSWIE 829



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 150/569 (26%), Positives = 248/569 (43%), Gaps = 102/569 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L++C       +G Q+H   +K G  +  +   + LL MY +C    D+L +F E+
Sbjct: 184 LAVVLKACGALEECDMGVQVHGLVVKFG-FDCDVVTGSALLGMYAKCKRLDDSLSVFSEL 242

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-ADLAALEYGK 125
           P +N  SW+AMI G ++     + L+LF  M       S ++  S F   A L+AL  GK
Sbjct: 243 PEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGK 302

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           ++HSH L +    D ++G++ +++Y KC                               G
Sbjct: 303 ELHSHALKSAFGSDIIVGTATLDMYAKC-------------------------------G 331

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           +M DA++V       S   +N++I GY  ++   +AL  F  + + G+  D  TL+  L+
Sbjct: 332 RMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALN 391

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+S+     G+QVHG A K   + ++ VA+A+LD Y K                     
Sbjct: 392 ACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGK--------------------- 430

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     C  + +A  +F  M  +  +SWN++I    QNG+  E L  F +M    +
Sbjct: 431 ----------CKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRM 480

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             D F+  SV+ ACA   +L  G ++  R+   G+  D  +  +LVD YCKCG       
Sbjct: 481 EPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADK 540

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      DA   F+ M   GV P   T+ A+L  C +   
Sbjct: 541 IHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLAT 600

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V  G K   A   +  +  ++   S +VD++++ G + ++  + E+ P   D   W+++L
Sbjct: 601 VGLG-KQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAP-NRDFVTWNAML 658

Query: 513 RGCVAHGDKGLGRKVAERM--IELDPENA 539
            G   HG      K+ E M  + + P +A
Sbjct: 659 CGYAHHGLGEEALKLFESMQLVNVKPNHA 687



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 140/502 (27%), Positives = 244/502 (48%), Gaps = 51/502 (10%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
            +I   + + Q C+  +S++ GKQ H   +  G   +T  ++N L+QMY++C     A  
Sbjct: 47  AKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTF-VSNCLMQMYIKCLYLDYACK 105

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122
           +FD+M  R+  S+N++I G+   G  + + + F  MP+++  SWN +ISGF    L   E
Sbjct: 106 VFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGF----LQNGE 161

Query: 123 YGKQIHSHILVN--GLDFDSVLGSSLVNLYGKCGDFNSANQ-------VLNMMKEPDDFC 173
             K I   + +   G+ FD    +SL  +   CG     +        V+    + D   
Sbjct: 162 CRKSIDVFLEMGRCGVGFDR---ASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVT 218

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
            SAL+  YA C +++D+  VF    + + V W++MI+G + N+ + E L LF +M+  GV
Sbjct: 219 GSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGV 278

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
               S  AS+  +C++L  L  GK++H HA K     D+IV +A LD Y+K         
Sbjct: 279 GVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAK--------- 329

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                                 CGR+ DA+ +  +MP  SL S+N++IVG +++    +A
Sbjct: 330 ----------------------CGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQA 367

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L  F  + K  L  D+ +L+  ++ACA+I     G QV          S+  ++ +++D 
Sbjct: 368 LKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDM 427

Query: 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
           Y KC   ALA  +++ +   +   +++ AI++AC+  G  +E    F +M     ++P+ 
Sbjct: 428 YGKC--KALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASM-IHSRMEPDD 484

Query: 474 EHYSCMVDLFARAGCLNEAVNL 495
             Y  ++   A    LN  + +
Sbjct: 485 FTYGSVLKACAGRQALNTGMEI 506



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 205/435 (47%), Gaps = 66/435 (15%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +L  GKQ H+ ++  G +  + + + L+ +Y KC   + A +V + M   D    +++IS
Sbjct: 64  SLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIIS 123

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GYA+CG+M+ AR+ F    +   V WNS+ISG++ N E  +++ +F +M R GV  D ++
Sbjct: 124 GYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRAS 183

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           LA VL AC +L   + G QVHG   K G   DV+  SALL  Y+K               
Sbjct: 184 LAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAK--------------- 228

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           C R++D+  +F  +P K+ +SW++MI G  QN   +E L+LF  
Sbjct: 229 ----------------CKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKE 272

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-- 417
           M  + + + +   AS+  +CA +S+L LG+++ +        SD I+ T+ +D Y KC  
Sbjct: 273 MQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGR 332

Query: 418 -------------------------------GYDALALFNEMRNTGVKPTIITFTAILSA 446
                                          G+ AL  F  +  TG+    IT +  L+A
Sbjct: 333 MADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNA 392

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C       EG++    +  +      I   + ++D++ +   L EA +L + M    D  
Sbjct: 393 CASIRGDLEGRQ-VHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMME-RRDAV 450

Query: 507 MWSSILRGCVAHGDK 521
            W++I+  C  +G++
Sbjct: 451 SWNAIIAACEQNGNE 465


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  285 bits (729), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 192/681 (28%), Positives = 317/681 (46%), Gaps = 132/681 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++      + +GKQ+H H  K G    ++ +AN L+ +Y +CG+      +FD +  R
Sbjct: 16  LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 75

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLA-ALEYGK 125
           N  SWN++I         E +L+ F  M  +N     F+   +++  +   +   L  GK
Sbjct: 76  NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 135

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN------------------------- 160
           Q+H++ L  G + +S + ++LV +YGK G   S+                          
Sbjct: 136 QVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 194

Query: 161 QVLNMMK----------EPDDFCL------------------------------------ 174
           Q+L  ++          EPD+F +                                    
Sbjct: 195 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVG 254

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GV 233
           SAL+  Y NC ++   RRVFD   D    +WN+MI+GY  N  D EALLLF  M  + G+
Sbjct: 255 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGL 314

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           L +++T+A V+ AC   G     + +HG   K G+  D  V + L+D YS+ G    A +
Sbjct: 315 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 374

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +F +++  D +  NTMIT Y      EDA  +   M N        +   +S+  S    
Sbjct: 375 IFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQN--------LERKVSKGAS---- 422

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
                   ++ L+ +  +L +++ +CA +S+L  G+++ A      L +D  + ++LVD 
Sbjct: 423 --------RVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDM 474

Query: 414 YCKC---------------------------------GYDALALFNEMRNTGVKPTIITF 440
           Y KC                                 G +A+ L   M   GVKP  +TF
Sbjct: 475 YAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTF 534

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
            ++ +AC H G+V EG + F  MK  Y ++P  +HY+C+VDL  RAG + EA  L+  MP
Sbjct: 535 ISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP 594

Query: 501 FEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
            + +  G WSS+L     H +  +G   A+ +I+L+P  A  Y+ L++I++++G W+K++
Sbjct: 595 RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKAT 654

Query: 560 LIRDIMREKHVGKLPGCSWAD 580
            +R  M+E+ V K PGCSW +
Sbjct: 655 EVRRNMKEQGVRKEPGCSWIE 675



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 70/320 (21%)

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSD 290
           G+  D     ++L A + L  +E GKQ+H H  K G  +D V VA               
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVA--------------- 49

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
                           NT++ +Y  CG       +F  +  ++ +SWNS+I  L      
Sbjct: 50  ----------------NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKW 93

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANI---SSLELGEQVFARVTIIGLDSDQIIS 407
             AL+ F  M   ++    F+L SV++AC+N+     L +G+QV A     G  +  II+
Sbjct: 94  EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIIN 153

Query: 408 TSLVDFYCKCG---------------------------------YDALALFNEMRNTGVK 434
           T LV  Y K G                                  +AL    EM   GV+
Sbjct: 154 T-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE 212

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P   T +++L AC H  +++ G++          +D      S +VD++     +     
Sbjct: 213 PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRR 272

Query: 495 LIEQMPFEADVGMWSSILRG 514
           + + M F+  +G+W++++ G
Sbjct: 273 VFDGM-FDRKIGLWNAMIAG 291



 Score = 42.4 bits (98), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 34/121 (28%)

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG--- 418
           L ++ D ++  +++ A A++  +ELG+Q+ A V   G   D + ++ +LV+ Y KCG   
Sbjct: 4   LGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 63

Query: 419 -----YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACD 448
                +D                         AL  F  M +  V+P+  T  ++++AC 
Sbjct: 64  AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 123

Query: 449 H 449
           +
Sbjct: 124 N 124


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  285 bits (729), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 157/497 (31%), Positives = 269/497 (54%), Gaps = 65/497 (13%)

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L AL+ G ++H+H   +G     V+ + ++++Y KC    +A ++ + M E D    + +
Sbjct: 102 LRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIM 161

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-D 236
           ISGYA  G++ +AR++FD+ T+  +  W +M SGY+ +++  EAL LF  M+R+   + +
Sbjct: 162 ISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCN 221

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             T++S L+A +++  L  GK++HGH  ++G+  D +V SAL D Y K            
Sbjct: 222 KFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGK------------ 269

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                              CG I +A+HIF    ++ ++SW +MI    + G   E   L
Sbjct: 270 -------------------CGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFAL 310

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F ++ K  +  ++F+ + V++ACA+ ++ ELG+QV   +T IG D     +++LV  Y K
Sbjct: 311 FSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTK 370

Query: 417 CGY---------------------------------DALALFNEMRNTGVKPTIITFTAI 443
           CG                                  +AL  F  +  +G +P  ITF  +
Sbjct: 371 CGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGV 430

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC H GLV +G ++FD++K ++ +    +HY+C++DL +R+G L EA ++I++MP E 
Sbjct: 431 LSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEP 490

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           D  +W+S+L GC  HG+  L ++ AE + E++PEN   Y  L++I+AT+G W   + +R 
Sbjct: 491 DKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRK 550

Query: 564 IMREKHVGKLPGCSWAD 580
           +M  + V K PG SW +
Sbjct: 551 VMDARGVVKKPGLSWIE 567



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 141/515 (27%), Positives = 229/515 (44%), Gaps = 107/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C    ++  G ++H H    G +   + I+NR+L MY++C +  +A  LFDEM  R
Sbjct: 95  LLQLCLQLRALDEGMKVHAHTKTSGFVPGVV-ISNRILDMYIKCNSLVNAKRLFDEMAER 153

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------------- 117
           +  SWN MI G+ K G  +++ +LF+ M ++++FSW  + SG+ + D             
Sbjct: 154 DLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQ 213

Query: 118 ---------------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
                                + +L  GK+IH HIL  GLD D V+ S+L ++YGKCG  
Sbjct: 214 RHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSI 273

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
             A                               R +FD+T D   V W +MI  Y    
Sbjct: 274 GEA-------------------------------RHIFDKTVDRDVVSWTAMIDRYFKEG 302

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
              E   LF  + ++G+  +  T + VL+AC+     E GKQVHG+  ++G       AS
Sbjct: 303 RREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAAS 362

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
            L+  Y+K                               CG I++A+ +F  MP   L+S
Sbjct: 363 TLVHMYTK-------------------------------CGNIKNARRVFNGMPRPDLVS 391

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           W S+I G +QNG P EAL  F  + K   + D  +   V+SAC +   ++ G + F  + 
Sbjct: 392 WTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIK 451

Query: 397 II-GLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
              GL         L+D   + G   +A  + ++M    ++P    + ++L  C   G +
Sbjct: 452 EKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKM---PIEPDKFLWASLLGGCRIHGNL 508

Query: 454 KEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAG 487
           K  ++  +A+   + I+PE    Y+ + +++A AG
Sbjct: 509 KLAKRAAEAL---FEIEPENPATYTTLANIYATAG 540


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  285 bits (729), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 184/581 (31%), Positives = 298/581 (51%), Gaps = 79/581 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C+    I  G+ +H + +K G  ++   +A  L+ MY +C + ++A +LF  +
Sbjct: 215 LGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAG-LVDMYAKCRHISEAEILFKGL 273

Query: 68  P--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAAL 121
              + N   W AM+ G+ + G   K+++ F  M     + N F++  +++  A + ++A 
Sbjct: 274 AFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILT--ACSSVSAH 331

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
            +G+Q+H  I+ NG   ++ + S+LV++Y K                             
Sbjct: 332 CFGEQVHGCIVRNGFGCNAYVQSALVDMYAK----------------------------- 362

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
             CG +  A+RV +   D   V WNSMI G + +  + EA+LLF KM    +  D  T  
Sbjct: 363 --CGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFP 420

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           SVL+ C  +G ++ GK VH    K G  +  +V++AL+D Y+K                 
Sbjct: 421 SVLNCCI-VGRID-GKSVHCLVIKTGFENYKLVSNALVDMYAK----------------- 461

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
            T  LN              A  +F  M  K +ISW S++ G +QNGS  E+L  FC+M 
Sbjct: 462 -TEDLNC-------------AYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMR 507

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
              +  D+F +AS++SACA ++ LE G+QV +    +GL S   ++ SLV  Y KCG   
Sbjct: 508 ISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLD 567

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
           DA A+F  M    V    IT+TA++      G  ++  K+F  MK  Y I+P  EHY+CM
Sbjct: 568 DADAIFVSMHVRDV----ITWTALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEHYACM 623

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           +DLF R G L+EA  ++ QM  + D  +W ++L  C  HG+  LG + A  + EL+P NA
Sbjct: 624 IDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELGERAATNLFELEPMNA 683

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             Y+ LS+++  + +W+ ++ IR +M+ K + K PGCSW +
Sbjct: 684 MPYVMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIE 724



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 152/577 (26%), Positives = 262/577 (45%), Gaps = 100/577 (17%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N+LL    + G   DA  LFD+M +R+ ++WN M+ G+  +G   ++ +LFN    ++ 
Sbjct: 118 SNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSS 177

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD----------SVL-GSSLVNLYGK 152
            +W+ LISG+ +       +G+Q  +  L   +  +          S+L G S + L  K
Sbjct: 178 ITWSSLISGYCR-------FGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQK 230

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT--DTSSVMWNSMIS 210
            G+      V N   E + + ++ L+  YA C  +++A  +F        + V+W +M++
Sbjct: 231 -GEMIHGYVVKNGF-ESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVT 288

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
           GY  N +D +A+  F  M   GV  +  T  S+L+ACSS+     G+QVHG   + G   
Sbjct: 289 GYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGC 348

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
           +  V SAL+D Y+K                               CG +  AK +   M 
Sbjct: 349 NAYVQSALVDMYAK-------------------------------CGDLGSAKRVLENME 377

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
           +  ++SWNSMIVG  ++G   EA+ LF  M+  ++++D ++  SV++ C  I     G+ 
Sbjct: 378 DDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCC--IVGRIDGKS 435

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCK-----CGY-------------------------- 419
           V   V   G ++ +++S +LVD Y K     C Y                          
Sbjct: 436 VHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGS 495

Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHY 476
             ++L  F +MR +GV P      +ILSAC    L++ G++   D +K        +   
Sbjct: 496 HEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVN-- 553

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM----- 531
           + +V ++A+ GCL++A  +   M    DV  W++++ G   +G      K  ++M     
Sbjct: 554 NSLVTMYAKCGCLDDADAIFVSMHVR-DVITWTALIVGYARNGKGRDSLKYFQQMKKIYG 612

Query: 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           IE  PE+    I L   F   G+ +++  I + M  K
Sbjct: 613 IEPGPEHYACMIDL---FGRLGKLDEAKEILNQMDVK 646



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 202/441 (45%), Gaps = 102/441 (23%)

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           Y    HS+ L+NGL               K G  + A ++ + M + D++  + ++SGYA
Sbjct: 112 YQSIFHSNQLLNGLS--------------KSGQIDDARELFDKMLQRDEYTWNTMVSGYA 157

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           N G++ +AR +F+  +  SS+ W+S+ISGY       EA  LF +MR  G      TL S
Sbjct: 158 NVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGS 217

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L  CS+LG ++ G+ +HG+  K G   +V V + L+D Y+K                  
Sbjct: 218 ILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAK------------------ 259

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMP-NK-SLISWNSMIVGLSQNGSPIEALDLFCNM 360
                        C  I +A+ +F+ +  NK + + W +M+ G +QNG   +A++ F  M
Sbjct: 260 -------------CRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYM 306

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
           +   +  ++F+  S+++AC+++S+   GEQV   +   G   +  + ++LVD Y KCG  
Sbjct: 307 HTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDL 366

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A+ LF +M    +K    TF ++L+ C
Sbjct: 367 GSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCC 426

Query: 448 ---------DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
                     HC ++K G + +  +             + +VD++A+   LN A  + E+
Sbjct: 427 IVGRIDGKSVHCLVIKTGFENYKLVS------------NALVDMYAKTEDLNCAYAVFEK 474

Query: 499 MPFEADVGMWSSILRGCVAHG 519
           M FE DV  W+S++ G   +G
Sbjct: 475 M-FEKDVISWTSLVTGYTQNG 494


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  285 bits (729), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 182/609 (29%), Positives = 287/609 (47%), Gaps = 102/609 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A   +SC     +   +QLH H +K  + +S   +   ++ +Y + GN  DA   F  +P
Sbjct: 256 ASAFRSCAAMPCLSTARQLHAHAIKN-VFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLP 314

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQ 126
             N  + NAM+ G ++ G   +++QLF  M +       + +SG   A A++     G Q
Sbjct: 315 HHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQ 374

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H   + +G D D  + +++++LYGKC                      AL+  Y     
Sbjct: 375 VHCLAVKSGFDVDVCVRNAILDLYGKC---------------------KALVEAYL---- 409

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNN--EDTEALLLFHKMRRNGVLEDASTLASVL 244
                 VF       SV WN++I+    N   EDT A L  ++M R+G+  D  T  SVL
Sbjct: 410 ------VFQEMEQRDSVSWNAIIAALEQNECYEDTIAHL--NEMLRSGMEPDDFTYGSVL 461

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+ L  LE+G  VHG A K G+  D  V+S ++D Y K                    
Sbjct: 462 KACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCK-------------------- 501

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      CG I +A+ +   +  + L+SWNS+I G S      EA   F  M  + 
Sbjct: 502 -----------CGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMG 550

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           ++ D F+ A+V+  CAN++++ELG+Q+  ++    +  D+ IS++LVD Y KCG      
Sbjct: 551 VKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSL 610

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +AL +F  M+   V P   TF A+L AC H G
Sbjct: 611 LMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVG 670

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           L+ +G ++F  M  +Y + P++EH++CMVD+  R+    EA+  I  MP EAD  +W ++
Sbjct: 671 LLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTL 730

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C    D  +    A  ++ LDP++A  YI LS+++A SG+W   S  R +MR+  + 
Sbjct: 731 LSICKIRQDVEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLR 790

Query: 572 KLPGCSWAD 580
           K PGCSW +
Sbjct: 791 KEPGCSWIE 799



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 157/633 (24%), Positives = 267/633 (42%), Gaps = 114/633 (18%)

Query: 8   LARLLQSCNT--HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
            + L Q C +    ++  G+  H   L  G + +T  ++N LLQMY RCG    A  +FD
Sbjct: 20  FSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTF-VSNCLLQMYARCGGTAHAHGVFD 78

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGK 125
            MP R+  SWN M+  ++  G  + +  LF  MP  +  SWN LISG+ +  +     G 
Sbjct: 79  TMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVG- 137

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGY 181
            +   +   G+  D    + L+   G   D     Q+    +    E D    SAL+  Y
Sbjct: 138 -LSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMY 196

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
             C  ++DA R F    + +SV W + I+G + N + T  + LF +M+R G+       A
Sbjct: 197 GKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYA 256

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----------------- 284
           S   +C+++  L   +Q+H HA K     D +V +A++D Y+K                 
Sbjct: 257 SAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHH 316

Query: 285 --------------RGMPSDACKLF----------------------SELKVY------- 301
                          G+ ++A +LF                      +E+K Y       
Sbjct: 317 NVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVH 376

Query: 302 ----------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
                     D  + N ++ +Y  C  + +A  +F+ M  +  +SWN++I  L QN    
Sbjct: 377 CLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYE 436

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           + +     M +  +  D F+  SV+ ACA + SLE G  V  +    GL  D  +S+++V
Sbjct: 437 DTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVV 496

Query: 412 DFYCKCGY---------------------------------DALALFNEMRNTGVKPTII 438
           D YCKCG                                  +A   F+EM + GVKP   
Sbjct: 497 DMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHF 556

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           T+  +L  C +   ++ G++    +  Q  +  E    S +VD++A+ G + +++ + E+
Sbjct: 557 TYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYIS-STLVDMYAKCGNMPDSLLMFEK 615

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
              + D   W++++ G   HG      ++ ERM
Sbjct: 616 AR-KLDFVSWNAMICGYALHGQGLEALEMFERM 647



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 12/233 (5%)

Query: 238 STLASVLSACSSLG--FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           +T + +   C+S G   L  G+  H      G +    V++ LL  Y++ G  + A  +F
Sbjct: 18  ATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVF 77

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
             +   DT+  NTM+T Y   G  + A  +F TMP+  ++SWN++I G  Q+G    ++ 
Sbjct: 78  DTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVG 137

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           L   M++  + +D+ +LA ++ +C  +  L LG Q+ A     GL++D    ++LVD Y 
Sbjct: 138 LSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYG 197

Query: 416 KCGY--DALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
           KC    DAL  F+ M  RN+      +++ A ++ C        G + F  M+
Sbjct: 198 KCRSLDDALRFFHGMGERNS------VSWGAAIAGCVQNEQYTRGMELFVQMQ 244


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  285 bits (729), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 180/607 (29%), Positives = 292/607 (48%), Gaps = 98/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQS     S+    QLH H    G L     +A +L   Y  CG+   A  +FD++  +
Sbjct: 28  LLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLK 87

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND-FSWNMLISGFAKADLAALEYGKQ 126
           N F WN+MI G+       ++L L+  M    QK D F++  ++   A  DL   E G++
Sbjct: 88  NSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLK--ACGDLLLREMGRK 145

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H+ ++V GL+ D  +G+S++++Y K GD  +A                           
Sbjct: 146 VHALVVVGGLEEDVYVGNSILSMYFKFGDVEAA--------------------------- 178

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
               R VFDR        WN+M+SG++ N E   A  +F  MRR+G + D +TL ++LSA
Sbjct: 179 ----RVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSA 234

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C  +  L+ GK++HG+  + G                               +V +  L+
Sbjct: 235 CGDVMDLKVGKEIHGYVVRNG----------------------------ESGRVCNGFLM 266

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N++I +Y +C  +  A+ +F  +  K ++SWNS+I G  + G   +AL+LF  M  +   
Sbjct: 267 NSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAV 326

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D+ ++ SV++AC  IS+L LG  V + V   G   + ++ T+L+  Y  CG        
Sbjct: 327 PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRV 386

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +A+++F EM   GV P    FTA+LSAC H GLV
Sbjct: 387 FDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLV 446

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            EG++ F  M   Y ++P   HYSC+VDL  RAG L+EA  +IE M  + +  +W+++L 
Sbjct: 447 DEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLS 506

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  L    A+++ EL+P+    Y+ LS+I+A    WE    +R ++ ++ + K 
Sbjct: 507 ACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKP 566

Query: 574 PGCSWAD 580
           P  S+ +
Sbjct: 567 PSYSFVE 573



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 39/258 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKG----ILNSTLPIANRLLQMYMRCGNPTDALLL 63
           L  LL +C     + VGK++H + ++ G    + N  L   N ++ MY  C + + A  L
Sbjct: 228 LLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFL--MNSIIDMYCNCESVSCARKL 285

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAAL 121
           F+ +  ++  SWN++I G+ K G   ++L+LF  M         + +     A   ++AL
Sbjct: 286 FEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISAL 345

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             G  + S+++  G   + V+G++L+ +Y  CG    A +V + M E +    + +++G+
Sbjct: 346 RLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGF 405

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
              G+                                 EA+ +F++M   GV  D     
Sbjct: 406 GIHGR-------------------------------GREAISIFYEMLGKGVTPDEGIFT 434

Query: 242 SVLSACSSLGFLEHGKQV 259
           +VLSACS  G ++ GK++
Sbjct: 435 AVLSACSHSGLVDEGKEI 452


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  285 bits (729), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 174/610 (28%), Positives = 287/610 (47%), Gaps = 100/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              ++++C     I +G+QLH H +K       L   N L+ MY   G    A  +F  +
Sbjct: 263 FGSVIKACYIAGDIDLGRQLHAHVIKSW-FGHHLTSQNALISMYTNFGQIEHASNVFTRI 321

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF---AKADLAALEYG 124
           P ++  SW  MI G+++LG++ ++L LF  + ++  +  N  I G    A + L  LEYG
Sbjct: 322 PTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYG 381

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQ+H   +  GL  +   G SL ++Y K G   SA      +K PD              
Sbjct: 382 KQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPD-------------- 427

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                             V WN++I+ +  N +  EA+  F +M   G+  D+ T  S+L
Sbjct: 428 -----------------IVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLL 470

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
             C S   L  G+Q+H +  K+G   ++ V                              
Sbjct: 471 CTCGSPVRLNQGRQIHSYIVKIGFDKEITVC----------------------------- 501

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
             N+++T+Y+ C  + DA ++FR +  N +L+SWN+++    Q     E   L+  M+  
Sbjct: 502 --NSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFS 559

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
             + D  ++ +++  CA ++SL +G QV       GL  D  +   L+D Y KCG     
Sbjct: 560 GNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHA 619

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                       ++AL LF  M N GV+P  +T+   LSAC H 
Sbjct: 620 RDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHI 679

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG + + +M+ ++ I P  EH+SC+VDL ARAGCL+EA   I++   +AD+  W +
Sbjct: 680 GLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWKT 739

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +  + A  +++LDP N+ A + L +I A++G WE+ + +R +M++  V
Sbjct: 740 LLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGV 799

Query: 571 GKLPGCSWAD 580
            K+PG SW +
Sbjct: 800 QKVPGQSWIE 809



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 145/564 (25%), Positives = 228/564 (40%), Gaps = 127/564 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C    S+   K++H H LK     S + + N ++ MY +CG+  DA  +FD M   
Sbjct: 165 LVLACANFRSLDYAKKIHDHVLKSNYQPSII-LQNHMINMYGKCGSMKDARKVFDTMQLP 223

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIH 128
           N  SW +MI G+ + G    ++ ++  M +   F   +      KA   A  ++ G+Q+H
Sbjct: 224 NVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLH 283

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           +H++       S  G  L +                          +ALIS Y N G++ 
Sbjct: 284 AHVI------KSWFGHHLTS-------------------------QNALISMYTNFGQIE 312

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSAC 247
            A  VF R      + W +MI+GYI      EAL LF  + R G  + +     SV SAC
Sbjct: 313 HASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSAC 372

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           SSL  LE+GKQVHG   K G+  +V    +L D Y+K G    A   F ++K  D +  N
Sbjct: 373 SSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWN 432

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            +I  ++                                NG   EA+D F  M  + L  
Sbjct: 433 AIIAAFAD-------------------------------NGDANEAIDFFRQMIHIGLTP 461

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDAL--- 422
           D  +  S++  C +   L  G Q+ + +  IG D +  +  SL+  Y KC   +DAL   
Sbjct: 462 DSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVF 521

Query: 423 -----------------------------ALFNEMRNTGVKPTIITFTAILSACD----- 448
                                         L+ EM  +G KP  IT T +L  C      
Sbjct: 522 RDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSL 581

Query: 449 ------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
                 HC  +K G            +  ++   + ++D++A+ G L  A ++ +     
Sbjct: 582 GVGNQVHCYSIKSG------------LILDVSVCNGLIDMYAKCGSLKHARDVFDSTQ-N 628

Query: 503 ADVGMWSSILRGCVAHGDKGLGRK 526
            D+  WSS++   V +   GLG +
Sbjct: 629 LDIVSWSSLI---VGYAQCGLGHE 649



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 127/545 (23%), Positives = 228/545 (41%), Gaps = 104/545 (19%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           + + LH+  L K I++ T+    R +  Y++   P+    +F  + +      N+ I   
Sbjct: 80  ITRVLHI-LLFKYIISMTIHSVFRRMYSYVK---PSLQPAIFSNLSKE--LPTNSYIIFL 133

Query: 83  MKLGHKEKSLQLFNVMPQKND--FSWNMLIS-GFAKADLAALEYGKQIHSHILVNGLDFD 139
            K  H +++L+ F+   + ++  F  +   S   A A+  +L+Y K+IH H+L +     
Sbjct: 134 CKQHHYKEALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPS 193

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
            +L + ++N+YGK                               CG M DAR+VFD    
Sbjct: 194 IILQNHMINMYGK-------------------------------CGSMKDARKVFDTMQL 222

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            + V W SMISGY  N +  +A++++ +M R+G   D  T  SV+ AC   G ++ G+Q+
Sbjct: 223 PNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQL 282

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H H  K      +   +AL+  Y+  G    A  +F+ +   D I   TMIT Y   G  
Sbjct: 283 HAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYR 342

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
            +A ++FR +  +     N  I G                              SV SAC
Sbjct: 343 VEALYLFRDLLRQGTYQPNEFIFG------------------------------SVFSAC 372

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------------------- 419
           +++  LE G+QV       GL  +     SL D Y K G+                    
Sbjct: 373 SSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWN 432

Query: 420 -------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        +A+  F +M + G+ P  IT+ ++L  C     + +G++   +   +
Sbjct: 433 AIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQ-IHSYIVK 491

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
              D EI   + ++ ++ +   L++A+N+   +   A++  W++IL  C+    +G   +
Sbjct: 492 IGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFR 551

Query: 527 VAERM 531
           + + M
Sbjct: 552 LYKEM 556



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 53/232 (22%)

Query: 338 NSMIVGLSQNGSPIEALDLF-CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           NS I+ L +     EAL+ F  ++   +   +  +  S++ ACAN  SL+  +++     
Sbjct: 127 NSYIIFLCKQHHYKEALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLDYAKKIH---- 182

Query: 397 IIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                          D   K  Y              +P+II    +++    CG +K+ 
Sbjct: 183 ---------------DHVLKSNY--------------QPSIILQNHMINMYGKCGSMKDA 213

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSILR 513
           +K FD M+      P +  ++ M+  +++ G  N+A+ +  QM       D   + S+++
Sbjct: 214 RKVFDTMQL-----PNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIK 268

Query: 514 GCVAHGDKGLGRKVAERMIE------LDPENACAYIQLSSIFATSGEWEKSS 559
            C   GD  LGR++   +I+      L  +NA     L S++   G+ E +S
Sbjct: 269 ACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNA-----LISMYTNFGQIEHAS 315


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  285 bits (729), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 182/611 (29%), Positives = 300/611 (49%), Gaps = 113/611 (18%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           +S ++  S+H G+QLH   LK G       + N L+  Y++      A  +FDE      
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSG-FGERNSVGNSLVAFYLKNQRVDSARKVFDE------ 255

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
                                    M +++  SWN +I+G+    LA  E G  +   +L
Sbjct: 256 -------------------------MTERDVISWNSIINGYVSNGLA--EKGLSVFVQML 288

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFN--------SANQVLNMMKEPDDFCLSALISGYANC 184
           V+G++ D    +++V+++  C D           +  V       D FC + L+  Y+ C
Sbjct: 289 VSGIEIDL---ATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC-NTLLDMYSKC 344

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G ++ A+ VF   +D S V + SMI+GY       EA+ LF +M   G+  D  T+ +VL
Sbjct: 345 GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 404

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           + C+    L+ GK+VH    +  +  D+ V++AL+D                        
Sbjct: 405 NCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD------------------------ 440

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                  +Y+ CG +++A+ +F  M  K +ISWN++I G S+N    EAL LF N+   +
Sbjct: 441 -------MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF-NLLLEE 492

Query: 365 LRM--DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
            R   D+ ++A V+ ACA++S+ + G ++   +   G  SD+ ++ SLVD Y KCG    
Sbjct: 493 KRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLL 552

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +A+ALFN+MR  G++   I+F ++L AC H
Sbjct: 553 AHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSH 612

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV EG ++F+ M+ +  I+P +EHY+C+VD+ AR G L +A   IE MP   D  +W 
Sbjct: 613 SGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWG 672

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           ++L GC  H D  L  KVAE++ EL+PEN   Y+ +++I+A + +WE+   +R  + ++ 
Sbjct: 673 ALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRG 732

Query: 570 VGKLPGCSWAD 580
           + K PGCSW +
Sbjct: 733 LRKNPGCSWIE 743



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 214/490 (43%), Gaps = 84/490 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +   C     I +G+ +H     K   +      N LL MY +CG+   A  +F EM
Sbjct: 299 IVSVFAGCADSRLISLGRAVH-SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 357

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             R+  S+ +MI G+ + G   ++++LF  M ++    + ++   +++  A+  L  L+ 
Sbjct: 358 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL--LDE 415

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK++H  I  N L FD  + ++L+++Y KCG    A  V + M+  D      +IS    
Sbjct: 416 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKD------IIS---- 465

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLAS 242
                                WN++I GY  N    EAL LF+ +        D  T+A 
Sbjct: 466 ---------------------WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 504

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL AC+SL   + G+++HG+  + G   D  VA++L+D Y+K                  
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK------------------ 546

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG +  A  +F  + +K L+SW  MI G   +G   EA+ LF  M +
Sbjct: 547 -------------CGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQ 593

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKC 417
             +  D+ S  S++ AC++   ++ G + F     I     +I  T      +VD   + 
Sbjct: 594 AGIEADEISFVSLLYACSHSGLVDEGWRFFN----IMRHECKIEPTVEHYACIVDMLART 649

Query: 418 GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHY 476
           G D +  +  + N  + P    + A+L  C     VK  +K  + +   + ++PE   +Y
Sbjct: 650 G-DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKV---FELEPENTGYY 705

Query: 477 SCMVDLFARA 486
             M +++A A
Sbjct: 706 VLMANIYAEA 715



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 213/467 (45%), Gaps = 55/467 (11%)

Query: 58  TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK-A 116
            D++  FD    R+    N  +  F + G+ E +++L  V   K D     L S     A
Sbjct: 51  VDSITTFD----RSVTDANTQLRRFCESGNLENAVKLLCV-SGKWDIDPRTLCSVLQLCA 105

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           D  +L+ GK++ + I  NG   DS LGS L                 ++M          
Sbjct: 106 DSKSLKDGKEVDNFIRGNGFVIDSNLGSKL-----------------SLM---------- 138

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
               Y NCG + +A RVFD      ++ WN +++    + + + ++ LF KM  +GV  D
Sbjct: 139 ----YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMD 194

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           + T + V  + SSL  +  G+Q+HG   K G  +   V ++L+  Y K      A K+F 
Sbjct: 195 SYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFD 254

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           E+   D I  N++I  Y S G  E    +F  M    +    + IV +    +    + L
Sbjct: 255 EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISL 314

Query: 357 FCNMNKLDL-----RMDKF--SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
              ++ + +     R D+F  +L  + S C ++ S    + VF  ++    D   +  TS
Sbjct: 315 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS---AKAVFREMS----DRSVVSYTS 367

Query: 410 LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
           ++  Y + G   +A+ LF EM   G+ P + T TA+L+ C    L+ EG++  + +K + 
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK-EN 426

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            +  +I   + ++D++A+ G + EA  +  +M  + D+  W++I+ G
Sbjct: 427 DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 187/608 (30%), Positives = 292/608 (48%), Gaps = 80/608 (13%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+SC     + +G QLH H LK       + +    L MY +C N  DA +LFD   
Sbjct: 243 ASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDNSE 301

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQ 126
             N  S+NAMI G+ +  H  K+L LF+ +         + +SG   A A +  L  G Q
Sbjct: 302 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 361

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           I+   + + L  D  + ++ +++YGK                               C  
Sbjct: 362 IYGLAIKSSLSLDVCVANAAIDMYGK-------------------------------CQA 390

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +A RVFD      +V WN++I+ +  N +  E L LF  M R+ +  D  T  S+L A
Sbjct: 391 LAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKA 450

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+  G L +G ++H    K G+  +  V  +L+D YSK GM  +A K+ S       +  
Sbjct: 451 CTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANV-- 507

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                     G +E+ + +      +  +SWNS+I G        +A  LF  M ++ + 
Sbjct: 508 ---------SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGIT 558

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            DKF+ A+V+  CAN++S  LG+Q+ A+V    L SD  I ++LVD Y KCG        
Sbjct: 559 PDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLM 618

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +A+ LF  M    +KP  +TF +IL AC H GL+
Sbjct: 619 FEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLI 678

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G ++F  MK  Y +DP++ HYS MVD+  ++G +  A+ LI +MPFEAD  +W ++L 
Sbjct: 679 DKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 738

Query: 514 GCVAHGDK-GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            C  H +   +  +    ++ LDP+++ AY  LS+++A +G WEK S +R  MR   + K
Sbjct: 739 VCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKK 798

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 799 EPGCSWVE 806



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 154/602 (25%), Positives = 257/602 (42%), Gaps = 123/602 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ ++ R ++ C    ++ +GKQ H H +  G   +T  + N LLQ+Y    +   A ++
Sbjct: 6   RLLHMTRSVE-CAKQGALELGKQAHAHMIISGFRPTTF-VLNCLLQVYTNSRDFVSASMV 63

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY 123
           FD+MP R+  SWN MI G+ K     K+   FN+MP ++  SWN ++SG+       L+ 
Sbjct: 64  FDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGY-------LQN 116

Query: 124 GKQIHS-HILVN----GLDFDSVLGSSLVNLYGKCGDFNSANQ----VLNMMKEPDDFCL 174
           G+ + S  + V+    G++FD    + ++ +     D +   Q    V+ +  + D    
Sbjct: 117 GESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAA 176

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           SAL+  YA   +  ++ RVF    + +SV W+++I+G + NN  + AL  F +M++    
Sbjct: 177 SALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAG 236

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
              S  ASVL +C++L  L  G Q+H HA K     D IV +A LD Y+K          
Sbjct: 237 VSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK---------- 286

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                C  ++DA+ +F    N +  S+N+MI G SQ     +AL
Sbjct: 287 ---------------------CDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKAL 325

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LF  +    L  D+ SL+ V  ACA +  L  G Q++       L  D  ++ + +D Y
Sbjct: 326 LLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMY 385

Query: 415 CKC---------------------------------GYDALALFNEMRNTGVKPTIITFT 441
            KC                                 GY+ L LF  M  + ++P   TF 
Sbjct: 386 GKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFG 445

Query: 442 AILSACD----------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
           +IL AC           H  +VK G     ++               ++D++++ G + E
Sbjct: 446 SILKACTGGSLGYGMEIHSSIVKSGMASNSSVG------------CSLIDMYSKCGMIEE 493

Query: 492 AVNLIEQMPFEADVG-------------------MWSSILRGCVAHGDKGLGRKVAERMI 532
           A  +  +    A+V                     W+SI+ G V        + +  RM+
Sbjct: 494 AEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMM 553

Query: 533 EL 534
           E+
Sbjct: 554 EM 555



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 133/579 (22%), Positives = 247/579 (42%), Gaps = 119/579 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L+ C+      +G Q+H   ++ G  ++ +  A+ LL MY +     ++L +F  +
Sbjct: 141 FAIILKVCSFLEDTSLGMQIHGIVVRVGC-DTDVVAASALLDMYAKGKRFVESLRVFQGI 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
           P +N  SW+A+I G ++      +L+ F  M + N      + +   +  A L+ L  G 
Sbjct: 200 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGG 259

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H+H L +    D ++ ++ +++Y K                               C 
Sbjct: 260 QLHAHALKSDFAADGIVRTATLDMYAK-------------------------------CD 288

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            M DA+ +FD + + +   +N+MI+GY       +ALLLFH++  +G+  D  +L+ V  
Sbjct: 289 NMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFR 348

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ +  L  G Q++G A K  +  DV VA+A +D Y K    ++A ++F E++  D   
Sbjct: 349 ACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDA-- 406

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                        +SWN++I    QNG   E L LF +M +  +
Sbjct: 407 -----------------------------VSWNAIIAAHEQNGKGYETLFLFVSMLRSRI 437

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             D+F+  S++ AC    SL  G ++ + +   G+ S+  +  SL+D Y KCG       
Sbjct: 438 EPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 496

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM---- 463
                         +    +M N  ++   +++ +I+S        ++ Q  F  M    
Sbjct: 497 IHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMG 556

Query: 464 ----KWQYH----------------------IDPEIEH--YSC--MVDLFARAGCLNEAV 493
               K+ Y                       I  E++   Y C  +VD++++ G L+++ 
Sbjct: 557 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR 616

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
            + E+     D   W++++ G   HG      ++ ERMI
Sbjct: 617 LMFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMI 654


>gi|302762633|ref|XP_002964738.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
 gi|300166971|gb|EFJ33576.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
          Length = 644

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 169/588 (28%), Positives = 289/588 (49%), Gaps = 91/588 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  + ++C    ++  GK++H +       NS + + + L+ MY +CG+ ++A L+F  M
Sbjct: 102 LVTIFEACGNPENLEDGKKIHAYL----SCNSDVVLGSSLITMYGKCGSLSEACLMFQSM 157

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF------------AK 115
              N  +WN+++  F++    E +++L+          W ML  GF            A 
Sbjct: 158 EEWNTVAWNSLMGAFVQHDRVEAAMELY----------WEMLQCGFLPSRPTFLTVLAAI 207

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           + L +L +GK +H  ++  G + D V+ ++LVN+YGK                       
Sbjct: 208 SSLESLRHGKLVHDTLVEAGHEDDVVVQTALVNMYGK----------------------- 244

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
                   CG + +A  VFDR      ++W+++IS +++  E  E+L LF KM+  G   
Sbjct: 245 --------CGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQLEGNRP 296

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           +  TL SVLSAC     LE GK +H    + G   D+IV +A++  Y K G   DA  +F
Sbjct: 297 NNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWDVF 356

Query: 296 SELKVYDTILL-NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
             +   + + + N +I++Y  CG    A+ +F +M  +  ++WN+M+    Q     +++
Sbjct: 357 HRVPRRNGVPIGNALISMYGRCGSFGKARDLFDSMAERDAVTWNTMMSVSEQLEHGRDSI 416

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LF  M +     DK ++ +V++ CA++ +L+ G+ + A +    L ++Q+I  ++++ Y
Sbjct: 417 QLFRQMLQEGTPPDKVTILTVLNVCASLPALQEGKAICAWLDHTPLSANQMIGNAILNMY 476

Query: 415 CKCGYD---------------------------------ALALFNEMRNTGVKPTIITFT 441
            KCG                                   A  +F  M+  G  P  +TFT
Sbjct: 477 AKCGSRDEARRIFSVMQGRDAVSWNALIGAYGSYSRGRYAFQIFQAMQLEGSTPDAVTFT 536

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            ILS C H GL+ E  KWF  M+  Y+++ E  HY C+VDL  R G + EA  + E+MP 
Sbjct: 537 TILSVCSHGGLLGEAVKWFRWMREDYYVEAETGHYGCIVDLLGRLGRVPEAEEVAEKMPA 596

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549
             D  +W+++L  C  HG+   G++ AER++ELDPE   AY+ LS+I+
Sbjct: 597 GTDPIVWTTLLSACQVHGETQRGKRAAERLVELDPEVTSAYVVLSTIY 644



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 223/489 (45%), Gaps = 86/489 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C+    +  G+Q+H    +       + + N L+QMY++CG+  DA  +F ++   
Sbjct: 1   LLRQCSRSKDLARGRQIHASIARSSAPQDPV-VGNWLIQMYLKCGSLIDASQVFYQLLET 59

Query: 71  ---NCFSWNAMIEGFMKLGHKEKSLQLFNVMP-QKNDFSWNMLISGF-AKADLAALEYGK 125
              N  +W A+I  + + G  + +++LF  M  + N      L++ F A  +   LE GK
Sbjct: 60  SVVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGK 119

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +IH+++  N    D VLGSSL+ +YGKCG  + A             CL           
Sbjct: 120 KIHAYLSCNS---DVVLGSSLITMYGKCGSLSEA-------------CL----------- 152

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                  +F    + ++V WNS++  ++ ++    A+ L+ +M + G L    T  +VL+
Sbjct: 153 -------MFQSMEEWNTVAWNSLMGAFVQHDRVEAAMELYWEMLQCGFLPSRPTFLTVLA 205

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A SSL  L HGK VH    + G  DDV+V +AL++ Y K G   +A ++F  +  +D IL
Sbjct: 206 AISSLESLRHGKLVHDTLVEAGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVIL 265

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            + +I+ + +C   E++  +FR M              L  N                  
Sbjct: 266 WSAVISAHVNCAEYEESLRLFRKMQ-------------LEGN------------------ 294

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALA 423
           R +  +L SV+SAC    +LE G+ +   V   G + D I+  ++V  Y KCG   DA  
Sbjct: 295 RPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWD 354

Query: 424 LFNEM-RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM------KWQ--YHIDPEIE 474
           +F+ + R  GV        A++S    CG   + +  FD+M       W     +  ++E
Sbjct: 355 VFHRVPRRNGVP----IGNALISMYGRCGSFGKARDLFDSMAERDAVTWNTMMSVSEQLE 410

Query: 475 HYSCMVDLF 483
           H    + LF
Sbjct: 411 HGRDSIQLF 419



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 192/449 (42%), Gaps = 98/449 (21%)

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L  G+QIH+ I  +    D V+G+ L+ +Y KCG    A+QV   + E            
Sbjct: 11  LARGRQIHASIARSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLE------------ 58

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
                           T+  + V W ++I+ Y  N +   A+ LF +M+  G   D  TL
Sbjct: 59  ----------------TSVVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITL 102

Query: 241 ASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            ++  AC +   LE GK++H + +C      DV++ S+L+  Y K G  S+AC +F  ++
Sbjct: 103 VTIFEACGNPENLEDGKKIHAYLSCN----SDVVLGSSLITMYGKCGSLSEACLMFQSME 158

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
            ++T+  N+++  +    R+E                                A++L+  
Sbjct: 159 EWNTVAWNSLMGAFVQHDRVE-------------------------------AAMELYWE 187

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M +      + +  +V++A +++ SL  G+ V   +   G + D ++ T+LV+ Y KCG 
Sbjct: 188 MLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVVQTALVNMYGKCGS 247

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            ++L LF +M+  G +P  +T  ++LSA
Sbjct: 248 VVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSA 307

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C+    ++ G+   + +  +   + ++   + +V ++ + G L +A ++  ++P    V 
Sbjct: 308 CEGPQALETGKGIHECVV-EAGYEGDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRNGVP 366

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELD 535
           + ++++      G  G  R + + M E D
Sbjct: 367 IGNALISMYGRCGSFGKARDLFDSMAERD 395


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 177/612 (28%), Positives = 316/612 (51%), Gaps = 87/612 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE----M 67
           L+SC +   +   KQ+H    + G+    + + N+L+     C +P +  L + E     
Sbjct: 44  LKSCKSMTHL---KQIHAQIFRVGLHQDIVSL-NKLMAF---CTDPFNGNLNYAEKMFKY 96

Query: 68  PRRNCF-SWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALE 122
            R  C   +N +I+ F K G+ +++L LF+ + +     ++F++  +    A   L  + 
Sbjct: 97  IRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFK--AIGYLGEVS 154

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
             +++   +   GL+FD+ + +SL+++Y +     +   V+ M+                
Sbjct: 155 KAEKLRGLVTKTGLEFDTYVRNSLIDMYAQL----ALTDVMKML---------------- 194

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLA 241
                      FD   D   + WN MISGY+      +A+ +F +M+  +G++ D +T+ 
Sbjct: 195 -----------FDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVV 243

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           S LSAC++L  LE GK++H H  +  V    I+ +ALLD Y K G  S A  +F E+   
Sbjct: 244 STLSACTALKRLELGKKIH-HYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSK 302

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           + I   TM++ Y++CG +E+A+ +F   P + ++ W +MI G  Q     EA+ LF  M 
Sbjct: 303 NVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQ 362

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
              ++ DKF + S+++ CA   ++E G+ +   +    +  D ++ T+L++ Y KCG+  
Sbjct: 363 IRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIE 422

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                           AL LF++M+  GV+P  ITF  +LSAC 
Sbjct: 423 KALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACS 482

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE---ADV 505
           H GLV+EG+K+F++M+ +Y I P++EHY C+VDL  RAG LNEA  LI+++P E     V
Sbjct: 483 HGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITV 542

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            ++ S+L  C  +G+  +G +VA+++++ +  ++  +  L++I+A +  WE  + +R  M
Sbjct: 543 PLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKM 602

Query: 566 REKHVGKLPGCS 577
           ++  V K PGCS
Sbjct: 603 KDLGVKKTPGCS 614



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 154/392 (39%), Gaps = 79/392 (20%)

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           S L +C S+    H KQ+H    +VG+  D++  + L+                     +
Sbjct: 42  SYLKSCKSM---THLKQIHAQIFRVGLHQDIVSLNKLM--------------------AF 78

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
            T   N         G +  A+ +F+ +    L+ +N +I   ++ G+    L LF  + 
Sbjct: 79  CTDPFN---------GNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLR 129

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY------- 414
           +  L  D F+   V  A   +  +   E++   VT  GL+ D  +  SL+D Y       
Sbjct: 130 EDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTD 189

Query: 415 --------------------------CKCGYDALALFNEMR-NTGVKPTIITFTAILSAC 447
                                     C+   DA+ +F  M+  +G+ P   T  + LSAC
Sbjct: 190 VMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSAC 249

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
                ++ G+K    ++      P I +   ++D++ + GCL+ A  + E+MP   +V  
Sbjct: 250 TALKRLELGKKIHHYVRDNVKFTPIIGN--ALLDMYCKCGCLSIARAVFEEMP-SKNVIC 306

Query: 508 WSSILRGCVAHGDKGLGRKVAE----RMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           W++++ G    G+    R++ E    R + +       Y+Q +  F  +    +   IR 
Sbjct: 307 WTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNR-FDEAVALFREMQIRK 365

Query: 564 IMREKH--VGKLPGCSWADGIAFNCW---FLD 590
           +  +K   V  L GC+    I    W   F+D
Sbjct: 366 VKPDKFIVVSLLTGCAQTGAIEQGKWIHEFID 397


>gi|357478575|ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510628|gb|AES91770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 665

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 166/568 (29%), Positives = 291/568 (51%), Gaps = 42/568 (7%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-----FSWN 107
           R G    A  LFDEMP R+  +WNAM+  + +LG  +++  LF+ M + +D     FS++
Sbjct: 17  RSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDSKPDNFSYS 76

Query: 108 MLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
             I+  A A  + + +G ++HS ++V+G      + ++L+++YGKC + N A +V + M 
Sbjct: 77  AAINSCAGA--SDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPNDARKVFDEMN 134

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
             ++    +L+  YAN  + + A  +F    +   + WN +I+ +    E    L LF +
Sbjct: 135 YSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACLHLFKE 194

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M  N    D  T ++++SAC+      HG  +H    K G    + V ++++  Y+K   
Sbjct: 195 MCENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFYAKLEC 254

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             DA K+F+    ++ +  N +I  +   G  + A   F+  P K+++SW SMIVG ++N
Sbjct: 255 HGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIVGYTRN 314

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
           G+   AL LF +M +   ++D     +V+ ACA+++ L  G+ V + +  +GLD    + 
Sbjct: 315 GNGDLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCIIHLGLDKYLFVG 374

Query: 408 TSLVDFYCKCG---------------------------------YDALALFNEMRNTGVK 434
            SL++ Y KCG                                  +A+ +F EM  +GV+
Sbjct: 375 NSLINMYAKCGDIEGSKLALRGINDKDLVSWNSMLFAFGLNGRGNEAICMFREMVASGVR 434

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P  +TFT +L  C H GL+ EG  +F +M  +Y +   ++H +CMVD+  R G + EA +
Sbjct: 435 PDEVTFTGLLMTCSHLGLIDEGFAFFQSMSLEYGLVQGMDHVACMVDMLGRGGYVAEAQS 494

Query: 495 LIEQMPFEA--DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
           L  +    +         +L  C AHGD G G  V E +  L+P+    Y+ LS+++  S
Sbjct: 495 LARKYSKTSRDKTNSCEVLLGACHAHGDLGTGSSVGEYVKNLEPKKEVGYVLLSNMYCAS 554

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           G+W+++ ++R  M ++ V K+PGCSW +
Sbjct: 555 GKWKEAEMVRKEMMDQGVKKVPGCSWIE 582



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 134/525 (25%), Positives = 227/525 (43%), Gaps = 73/525 (13%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC     I  G +LH   +  G   S+LP+AN L+ MY +C NP DA  +FDEM   N
Sbjct: 79  INSCAGASDIRFGTKLHSLVVVSG-YQSSLPVANALIDMYGKCFNPNDARKVFDEMNYSN 137

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---------------- 115
             +W +++  +      + + ++F  MP+K + +WN++I+  A+                
Sbjct: 138 EVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACLHLFKEMCE 197

Query: 116 ---------------ADLAALE--YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
                          A   ++E  +G  +H  ++ +G      + +S+V+ Y K      
Sbjct: 198 NLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFYAKLECHGD 257

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           A +V N     +    +A+I  +   G    A   F +  + + V W SMI GY  N   
Sbjct: 258 AVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIVGYTRNGNG 317

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
             AL LF  M+RN    D     +VL AC+SL  L HGK VH     +G           
Sbjct: 318 DLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCIIHLG----------- 366

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           LD Y   G                    N++I +Y+ CG IE +K   R + +K L+SWN
Sbjct: 367 LDKYLFVG--------------------NSLINMYAKCGDIEGSKLALRGINDKDLVSWN 406

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI- 397
           SM+     NG   EA+ +F  M    +R D+ +   ++  C+++  ++ G   F  +++ 
Sbjct: 407 SMLFAFGLNGRGNEAICMFREMVASGVRPDEVTFTGLLMTCSHLGLIDEGFAFFQSMSLE 466

Query: 398 IGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
            GL         +VD   + GY  +A +L  +   T    T  +   +L AC   G +  
Sbjct: 467 YGLVQGMDHVACMVDMLGRGGYVAEAQSLARKYSKTSRDKT-NSCEVLLGACHAHGDLGT 525

Query: 456 GQKWFDAMKWQYHIDPEIE-HYSCMVDLFARAGCLNEAVNLIEQM 499
           G    + +K   +++P+ E  Y  + +++  +G   EA  + ++M
Sbjct: 526 GSSVGEYVK---NLEPKKEVGYVLLSNMYCASGKWKEAEMVRKEM 567



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 184/393 (46%), Gaps = 22/393 (5%)

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLED 236
           I   A  G++  AR++FD   +  +V WN+M++ Y       +   LF  MRR +    D
Sbjct: 12  IVSLARSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDSKPD 71

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             + ++ +++C+    +  G ++H      G    + VA+AL+D Y K   P+DA K+F 
Sbjct: 72  NFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPNDARKVFD 131

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           E+   + +   +++  Y++  R + A  IFR+MP K  I+WN +I   ++ G     L L
Sbjct: 132 EMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACLHL 191

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M +   + D+++ ++++SAC        G  +   V   G  +   ++ S+V FY K
Sbjct: 192 FKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFYAK 251

Query: 417 --CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
             C  DA+ +F    N+G     +++ AI+ A      +K G      + +Q   +  I 
Sbjct: 252 LECHGDAVKVF----NSGGAFNQVSWNAIIDA-----HMKVGDTQKALLAFQQAPEKNIV 302

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            ++ M+  + R G  + A++L   M    F+ D  +  ++L  C +      G+ V   +
Sbjct: 303 SWTSMIVGYTRNGNGDLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCI 362

Query: 532 IELDPENACAYI----QLSSIFATSGEWEKSSL 560
           I L  +    Y+     L +++A  G+ E S L
Sbjct: 363 IHLGLDK---YLFVGNSLINMYAKCGDIEGSKL 392



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 138/322 (42%), Gaps = 68/322 (21%)

Query: 8   LARLLQSCN-THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            + L+ +C  +  S+H G  +H   +K G  ++ + + N ++  Y +     DA+ +F+ 
Sbjct: 207 FSALMSACTESMESLH-GCMMHCFVIKSG-WSTAMEVNNSIVSFYAKLECHGDAVKVFNS 264

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK----------- 115
               N  SWNA+I+  MK+G  +K+L  F   P+KN  SW  +I G+ +           
Sbjct: 265 GGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIVGYTRNGNGDLALSLF 324

Query: 116 ----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                                 A LA L +GK +HS I+  GLD    +G+SL+N+Y KC
Sbjct: 325 LDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCIIHLGLDKYLFVGNSLINMYAKC 384

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           GD   +   L  + + D      L+S                         WNSM+  + 
Sbjct: 385 GDIEGSKLALRGINDKD------LVS-------------------------WNSMLFAFG 413

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDV 272
            N    EA+ +F +M  +GV  D  T   +L  CS LG ++ G       + + G++  +
Sbjct: 414 LNGRGNEAICMFREMVASGVRPDEVTFTGLLMTCSHLGLIDEGFAFFQSMSLEYGLVQGM 473

Query: 273 IVASALLDTYSKRGMPSDACKL 294
              + ++D   + G  ++A  L
Sbjct: 474 DHVACMVDMLGRGGYVAEAQSL 495


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 192/625 (30%), Positives = 303/625 (48%), Gaps = 92/625 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTL-PIANRLLQMYMRCGNPTDA------ 60
            + +L+ C+   ++ +GKQ+H   L   ++++ + P    L  +   C    D       
Sbjct: 151 FSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKV 210

Query: 61  -----LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--- 112
                 L +D  P    FS NA+++ + K G  E ++ +F  +P+ +  SWN +I+G   
Sbjct: 211 HGYLIKLGYDSDP----FSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGS-SLVNLYGKCGDFNSANQVLNMMKEPDD 171
             K DLA    GK     +  +     S L + + + L       +SA  ++ M  EPD 
Sbjct: 267 HEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSA--LMKMDMEPDS 324

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
           F    LI  Y+ CG + DAR VFD       ++WNS+ISGY +   D EA+ LF  M + 
Sbjct: 325 FVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKE 384

Query: 232 GVLEDASTLASVLSACS---SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
           G+  + +TL+++L + +   + GF E   QVH  + K G   D  VA++LLD+       
Sbjct: 385 GLEFNQTTLSTILKSTAGSQANGFCE---QVHTISIKSGYQYDGYVANSLLDS------- 434

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                                   Y  C  +EDA  +F   P + L+++ SMI   SQ G
Sbjct: 435 ------------------------YGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYG 470

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              EAL ++  M   D++ D F  +S+ +ACAN+S+ E G+Q+   V   GL SD     
Sbjct: 471 LGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGN 530

Query: 409 SLVDFYCKCG---------------------------------YDALALFNEMRNTGVKP 435
           SLV+ Y KCG                                   AL LF +M   G+ P
Sbjct: 531 SLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILP 590

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
             IT  ++LSAC+H GLV E +++F  M+  + I P  EHY+CMVD+  R G L+EA+ L
Sbjct: 591 NHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVL 650

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555
           +++MPF+A   +W ++L     H +  LGR  AE ++ L+PE +  +I L++I+A++G W
Sbjct: 651 VKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMW 710

Query: 556 EKSSLIRDIMREKHVGKLPGCSWAD 580
           +  + +R  M+   V K PG SW +
Sbjct: 711 DNVAKVRRSMKNSLVKKEPGMSWIE 735



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 144/328 (43%), Gaps = 46/328 (14%)

Query: 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF---------DRT 197
           VNLY KC  F  A +++    EPD    SALISGY   G+  +A   +            
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
              SSV+    ++  +   +    + L  +M   G+  +  +L++VL+AC+ L    +G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           +VHG+  K+G   D   A+ALLD Y+K G P  A  +F E+                   
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEI------------------- 249

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
                       P   ++SWN++I G   +     AL L   M    +    F+L+S + 
Sbjct: 250 ------------PKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALK 297

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKP 435
           ACA I  ++LG Q+ + +  + ++ D  +   L+D Y KCG   DA  +F+ M    V  
Sbjct: 298 ACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDV-- 355

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAM 463
             I + +I+S   +CG   E    F  M
Sbjct: 356 --IVWNSIISGYSNCGYDIEAMSLFTNM 381



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 36/225 (16%)

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           + +YS C     A+ +        L+SW+++I G  QNG   EAL  +  M  L  + ++
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMR 429
           F+ +SV+  C+   +LELG+Q+                              +AL  EM 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQI----------------------------HRVALVTEMI 180

Query: 430 NTGVKPTIITFTAILSACDHCGLVKE--GQKWFDAM-KWQYHIDPEIEHYSCMVDLFARA 486
           +TG+ P   + + +L+AC   GL  E  G K    + K  Y  DP     + ++D++A++
Sbjct: 181 STGISPNEFSLSTVLNAC--AGLEDENYGMKVHGYLIKLGYDSDP--FSANALLDMYAKS 236

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           GC   A+ +  ++P + D+  W++++ GCV H    L  K+  +M
Sbjct: 237 GCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLHEKNDLALKLLGKM 280



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 171/407 (42%), Gaps = 91/407 (22%)

Query: 155 DFNSANQVLNMMKEP-DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           +F   + +  ++++P   F ++  +   +N    + +  + D +++ SS+ +  ++  + 
Sbjct: 2   NFPHLHSLRTVLRKPLKPFIVNTSVKYISNLRPNDVSGFILDSSSNPSSISYPKLLLQFT 61

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--- 270
           ++ + +  + +  ++ R G+L   + L ++ S C                 +  VID   
Sbjct: 62  ASKDVSSGMAIHARIIRLGLLGLRNRLVNLYSKCQCF-----------RVARKLVIDSSE 110

Query: 271 -DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN------TMITVYSSCG---RIE 320
            D++  SAL+  Y + G   +A      L  Y+  LL       T  +V   C     +E
Sbjct: 111 PDLVSWSALISGYVQNGRGEEAL-----LTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLE 165

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
             K I R      +IS      G+S N                     +FSL++V++ACA
Sbjct: 166 LGKQIHRVALVTEMIS-----TGISPN---------------------EFSLSTVLNACA 199

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------YD----------- 420
            +     G +V   +  +G DSD   + +L+D Y K G         Y+           
Sbjct: 200 GLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNA 259

Query: 421 -------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                        AL L  +M +  V P++ T ++ L AC   GLVK G++   A+  + 
Sbjct: 260 VIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSAL-MKM 318

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            ++P+      ++D++++ G L +A  + + MP + DV +W+SI+ G
Sbjct: 319 DMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXK-DVIVWNSIISG 364


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 201/678 (29%), Positives = 309/678 (45%), Gaps = 140/678 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTDALLLFDEMP 68
           +LQ C+   S+  GK+ H       +    +   +  +L+ MY++CG+  +A  +FDEMP
Sbjct: 97  VLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMP 156

Query: 69  R-RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
           +  +   W A++ G+ K G   + + LF  M           IS   K  A L ++E G+
Sbjct: 157 QVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGE 216

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H   L+  L F S           +C   N                  AL++ YA   
Sbjct: 217 VVHG--LLEKLGFGS-----------QCAVGN------------------ALMAFYAKSN 245

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           +  DA  VFD       + WNSMISG  SN    +A+ LF +M   G   D++TL SVL 
Sbjct: 246 RTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLP 305

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD------------------------- 280
           AC+ L  L  G+ VHG++ K G I    +A+ LLD                         
Sbjct: 306 ACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVS 365

Query: 281 ------TYSKRGMPSDACKLFSELKVYDT------------------------------- 303
                 +Y++ G+      LF E+ +  T                               
Sbjct: 366 WTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAI 425

Query: 304 --------ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                    + N ++ +Y  CG +E+AK IF  + +K +ISWN++I G S+N    EA  
Sbjct: 426 RNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFS 485

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  M  L LR +  ++  ++ A A++SSLE G ++ A     G   D  ++ +L+D Y 
Sbjct: 486 LFTEM-LLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYV 544

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                  DA+ALF +MR +G+ P   +F+A
Sbjct: 545 KCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSA 604

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           IL AC H GL  EG ++FDAM+ ++ I+P ++HY+CMVDL    G L EA   I+ MP E
Sbjct: 605 ILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIE 664

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
            D  +W S+LRGC  H +  L  +VAER+ EL+PEN   Y+ L++I+A +  WE    ++
Sbjct: 665 PDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLK 724

Query: 563 DIMREKHVGKLPGCSWAD 580
           + +  + + +  GCSW +
Sbjct: 725 NKIGGRGLRENTGCSWIE 742


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 185/662 (27%), Positives = 308/662 (46%), Gaps = 128/662 (19%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y++ G+ T A  LFD MP R+  SWN M+ G+      E++  LF  MP++N  
Sbjct: 130 NAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGV 189

Query: 105 SWNMLISGFAKAD---------------------------LAALEY-GK-----QIHSHI 131
           SW ++ISG+   +                           L+A+ + GK      IH  +
Sbjct: 190 SWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLV 249

Query: 132 LVNGLDFDSVLGSSLVNLYGK-CGDFNSANQVLNMMKEPDDFCLSALI------------ 178
              G + D V+G++++N Y K     +SA +    M   +++  S +I            
Sbjct: 250 HKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDA 309

Query: 179 -------------------SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
                              +G A  G+++DA+ +FD+  + + V WN+MI+GY+ N    
Sbjct: 310 FAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVD 369

Query: 220 EALLLFHKMR---------------RNGVLEDASTLASVLS----------------ACS 248
           EA  LF++M                RNG  E A      L                 ACS
Sbjct: 370 EAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACS 429

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           ++  LE GKQVH  A K G   +  V +AL+  Y K        ++F  + V DT+  N+
Sbjct: 430 NIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNS 489

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
            ++        ++A+ +F  MP+  ++SW ++I   +Q     EA+++F +M       +
Sbjct: 490 FMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPN 549

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------- 417
              L  ++    N+ + +LG+Q+      +G+DS  +++ +LV  Y KC           
Sbjct: 550 PPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSLKVFDS 609

Query: 418 ---------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                G +A+ ++  M + GV P  +TF  +L AC H GLV EG
Sbjct: 610 MEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEG 669

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            ++F +M   Y + P +EHY+CMVDL  RAG +  A + I  MP E D  +WS++L  C 
Sbjct: 670 HQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACK 729

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  +GR+ AE++  ++P NA  Y+ LS+I+++ G W++ + +R +M+E+ V K PGC
Sbjct: 730 IHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGC 789

Query: 577 SW 578
           SW
Sbjct: 790 SW 791



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 221/495 (44%), Gaps = 71/495 (14%)

Query: 40  TLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99
           ++P    +L    R G   DA +LFD++   N  SWNAMI G+M+    +++  LFN MP
Sbjct: 320 SVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMP 379

Query: 100 QKNDFSWNMLISGFAK---------------------------------ADLAALEYGKQ 126
            +N  SW  +I+G+A+                                 +++ ALE GKQ
Sbjct: 380 FRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQ 439

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +HS  +  G  F+S + ++L+ LYGK     S  Q+ + M   D    ++ +S       
Sbjct: 440 VHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNL 499

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            ++AR VF+       V W ++IS     ++  EA+ +F  M     L +   L  +L  
Sbjct: 500 FDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGL 559

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
             +LG  + G+Q+H  A K+G+   ++VA+AL+  Y K       C     LKV+D    
Sbjct: 560 SGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFK-------CSSADSLKVFD---- 608

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                                +M  + + +WN++I G +Q+G   EA+ ++  M    + 
Sbjct: 609 ---------------------SMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVL 647

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGYDALALF 425
            ++ +   ++ AC++   ++ G Q F  ++   GL         +VD   + G D     
Sbjct: 648 PNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAG-DVQGAE 706

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFA 484
           + + +  ++P  + ++A+L AC     V+ G++   A +  + I+P    +Y  + ++++
Sbjct: 707 HFIYDMPIEPDSVIWSALLGACKIHKNVEIGRR---AAEKLFSIEPSNAGNYVMLSNIYS 763

Query: 485 RAGCLNEAVNLIEQM 499
             G  +E   + + M
Sbjct: 764 SQGMWDEVAKVRKLM 778



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/521 (24%), Positives = 224/521 (42%), Gaps = 86/521 (16%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G   +A  +FD MP R+  +WN+MI  +   G  +    L + +   N  +  +L+SG
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSG 104

Query: 113 FAKADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
           +A+A       G+   +  + +G+   ++V  +++V  Y + GD   A ++ + M   D 
Sbjct: 105 YARA-------GRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDV 157

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
              + +++GY +   M +AR +F+R  + + V W  MISGY+   +   A  +F  M   
Sbjct: 158 SSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCE 217

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR-GMPSD 290
           G+  +   L SVLSA   LG     + +H    K G   DV+V +A+L+ Y+K   M   
Sbjct: 218 GMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDS 277

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS----------------- 333
           A K F  +   +    +T+I   S  GRI+DA  +++  P KS                 
Sbjct: 278 AVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRI 337

Query: 334 --------------LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS-- 377
                         ++SWN+MI G  QN    EA DLF   N++  R +  S A +I+  
Sbjct: 338 DDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLF---NRMPFR-NTISWAGMIAGY 393

Query: 378 ---------------------------------ACANISSLELGEQVFARVTIIGLDSDQ 404
                                            AC+NI +LE G+QV +     G   + 
Sbjct: 394 ARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNS 453

Query: 405 IISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
            +  +L+  Y K  Y ++    ++ +       +++ + +SA     L  E +  F+ M 
Sbjct: 454 YVCNALITLYGK--YRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP 511

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
                 P++  ++ ++   A+A   NEAV +   M  E ++
Sbjct: 512 -----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHEREL 547



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 168/386 (43%), Gaps = 50/386 (12%)

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           + P     SA I      G++++AR VFD       + WNSMI  Y +N        L  
Sbjct: 29  RSPGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLAD 88

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            +   G L   + L   LS  +  G +   ++V      +GV  + +  +A++  Y + G
Sbjct: 89  AI-SGGNLRTGTIL---LSGYARAGRVRDARRVFD---GMGV-RNTVAWNAMVTCYVQNG 140

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG--- 343
             + A KLF  +   D    NTM+T Y     +E+A+++F  MP ++ +SW  MI G   
Sbjct: 141 DITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVL 200

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
           + Q+G    A D+F  M    +  ++ +L SV+SA  ++    + E +   V   G + D
Sbjct: 201 IEQHG---RAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERD 257

Query: 404 QIISTSLVDFYCKCGY---DALALFNEM--RNTGVKPTII-------------------- 438
            ++ T++++ Y K       A+  F  M  RN     TII                    
Sbjct: 258 VVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDP 317

Query: 439 -----TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
                + T++L+     G + + +  FD    Q H +P +  ++ M+  + +   ++EA 
Sbjct: 318 LKSVPSRTSMLTGLARYGRIDDAKILFD----QIH-EPNVVSWNAMITGYMQNEMVDEAE 372

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHG 519
           +L  +MPF   +  W+ ++ G   +G
Sbjct: 373 DLFNRMPFRNTIS-WAGMIAGYARNG 397



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 24/170 (14%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            +G+Q+H   +K G ++S L +AN L+ MY +C +  D+L +FD M  R+ F+WN +I G
Sbjct: 567 QLGQQIHTIAIKLG-MDSGLVVANALVSMYFKCSS-ADSLKVFDSMEERDIFTWNTIITG 624

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSV 141
           + + G   ++++++ +M         +   G   A           HS ++  G  F   
Sbjct: 625 YAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHA---------CSHSGLVDEGHQFFKS 675

Query: 142 LGSS------------LVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALI 178
           + S             +V+L G+ GD   A   + +M  EPD    SAL+
Sbjct: 676 MSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALL 725


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 199/614 (32%), Positives = 307/614 (50%), Gaps = 80/614 (13%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           ++L+SC  +  +  GK LH  +LK  I +ST  ++N  + +Y +C   T A   F++   
Sbjct: 13  QILKSCIANKDLLTGKSLHTIYLKSLIPSSTY-LSNHFILLYSKCNLLTTAHHAFNQTHE 71

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KAD-LAALE-YGKQ 126
            N FS+NA+I  + K      +  LF+ +PQ +  S+N LI+ +A + D L+AL  +G+ 
Sbjct: 72  PNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEM 131

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC--LSALISGYANC 184
               ++++G  F  V+ ++  N  G     +S    L      D +    ++L++ Y+  
Sbjct: 132 REMGLVMDGFTFSGVI-TACCNHVGLIRQLHS----LAFSSGFDSYVSVKNSLLTYYSKN 186

Query: 185 GKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           G + +A  VF+   +     V WNSMI  Y  +    +AL L+  M   G   D  TLAS
Sbjct: 187 GILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLAS 246

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP-SDACKLFSELKVY 301
           VL+  S +  L  G Q H  A K G   +  V S L+D Y+K G   S++ K+F E+   
Sbjct: 247 VLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEI--- 303

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS-PIEALDLFCNM 360
                         CG                L+ WN+MI G SQN    +EAL+ F  M
Sbjct: 304 --------------CG--------------SDLVVWNTMISGYSQNKELSVEALECFRQM 335

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG- 418
            +     D  S    ISAC+N+SS   G+Q  A      + S+QI ++ +LV  Y KCG 
Sbjct: 336 QRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGN 395

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            ++L LF +M    + PT IT  +ILSA
Sbjct: 396 LQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSA 455

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H G V+EG+K+F+ MK  + I+PE EHYSCM+DL  RAG L+EA  LI+ MPF     
Sbjct: 456 CAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSA 515

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            W+++L  C  +G+  L  K A + ++L+P NA  YI L+S+++ + +WE+++ IR +MR
Sbjct: 516 AWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMR 575

Query: 567 EKHVGKLPGCSWAD 580
           ++ + K PGCSW +
Sbjct: 576 DRGIRKKPGCSWIE 589


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 178/610 (29%), Positives = 292/610 (47%), Gaps = 103/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   +++C     + +G+Q+H   +K       L + N L+ MY + G+  D   LF+ +
Sbjct: 149 LGSAVRACAELGDLGLGRQVHAQAIKSDN-GGHLIVQNALVTMYSKSGSVGDGFALFERI 207

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAKADLAALE 122
             ++ FSW ++I G  + G +  +L +F  M        N+F +  +    +   + +LE
Sbjct: 208 RDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVV-INSLE 266

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           YG+QIH   +   LD +S  G SL       GD                         YA
Sbjct: 267 YGEQIHGLCVKYKLDRNSYAGCSL-------GDM------------------------YA 295

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            C K++ A +VF R      V WNS+I+ + ++   +EA++LF +MR + +  D  T+ +
Sbjct: 296 RCNKLDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMA 355

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L AC     L  G+ +H +  K+G+  DV+V                            
Sbjct: 356 LLCACVGCDALRQGRSIHSYLVKLGLGGDVMVC--------------------------- 388

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
               N++I++Y+ C     A  +F    ++ +++WNS++    Q+    +   LF  ++ 
Sbjct: 389 ----NSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHS 444

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
               +D+ SL +V+SA A +   E+ +QV A    +GL SD I+S +L+D Y KCG    
Sbjct: 445 SMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLDD 504

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +AL LF  MRN GVKP  +TF  +L AC 
Sbjct: 505 ANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACS 564

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
             GLV EG  ++  M+ +Y I P  EH SC++DL ARAG L+EA   ++QMPFE D+ MW
Sbjct: 565 RVGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMW 624

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           +++L     H D  +G++ AE ++ +DP ++ AY+ L +I+A+SG W + + ++  MR  
Sbjct: 625 NTLLAASRTHNDVEMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSS 684

Query: 569 HVGKLPGCSW 578
            V K PG SW
Sbjct: 685 GVQKSPGKSW 694



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 172/356 (48%), Gaps = 26/356 (7%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LI+ Y  C   + AR VFD   D + V W ++I+ +  N+   +A+ LF  M R G   D
Sbjct: 86  LITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPD 145

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
              L S + AC+ LG L  G+QVH  A K      +IV +AL+  YSK G   D   LF 
Sbjct: 146 EFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFE 205

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-------PNK----SLISWNSMIVGLS 345
            ++  D     ++I   +  GR  DA HIFR M       PN+    S+    S+++   
Sbjct: 206 RIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSL 265

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           + G  I  L   C   KLD   + ++  S+    A  + L+   +VF R+     +S  +
Sbjct: 266 EYGEQIHGL---CVKYKLD--RNSYAGCSLGDMYARCNKLDSAMKVFYRI-----ESPDL 315

Query: 406 IS-TSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
           +S  SL++ +   G   +A+ LF+EMR + +KP  IT  A+L AC  C  +++G+     
Sbjct: 316 VSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSY 375

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
           +  +  +  ++   + ++ ++ R      A+++  +   + DV  W+SIL  CV H
Sbjct: 376 LV-KLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETN-DRDVVTWNSILTACVQH 429



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 123/307 (40%), Gaps = 61/307 (19%)

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS L     G+ VH H          ++AS+    Y  R                +TIL 
Sbjct: 50  CSRLRSFPQGRLVHRH----------LLASSAGAAYLAR----------------NTILS 83

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +IT+Y  C   + A+ +F  M +++ +SW ++I   +QN    +A+ LF +M +L   
Sbjct: 84  NHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTA 143

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D+F+L S + ACA +  L LG QV A+          I+  +LV  Y K G        
Sbjct: 144 PDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFAL 203

Query: 419 -------------------------YDALALFNEMRNTGV-KPTIITFTAILSACDHCGL 452
                                     DAL +F EM   G+  P    F ++  AC     
Sbjct: 204 FERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVIN 263

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
             E  +    +  +Y +D        + D++AR   L+ A+ +  ++    D+  W+S++
Sbjct: 264 SLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIE-SPDLVSWNSLI 322

Query: 513 RGCVAHG 519
               A G
Sbjct: 323 NAFSADG 329


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 217/757 (28%), Positives = 338/757 (44%), Gaps = 190/757 (25%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+  ++  S+  G+ +H   L+K  L     +AN L+ +Y RCG   DA  +FD M  R
Sbjct: 210 VLKCVSSLGSLTEGEVIH-GLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPR 268

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDFSWNMLISGF-AKADLAALEYGKQIH 128
           +  SWN+MI G    G    ++ LF+ M  Q  + S   ++S   A A L     GK +H
Sbjct: 269 DAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVH 328

Query: 129 SHILVNGLDF----------DSVLGSSLVNLYGKC------------------------- 153
            + + +GL +          D+ LGS LV +Y KC                         
Sbjct: 329 GYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLI 388

Query: 154 -------GDFNSANQVLNMMKE----PDDF----------CLS----------------- 175
                  G+F  +  +   M E    PD+           CLS                 
Sbjct: 389 MGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGF 448

Query: 176 --------ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
                   ALIS YA    + DA  VF+R     ++ WNS+ISG  SN  ++EA+ LF +
Sbjct: 449 GAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIR 508

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD---------------- 271
           M   G   D+ TL SVL AC+   +   G+ VHG++ K G+I +                
Sbjct: 509 MWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSD 568

Query: 272 ---------------VIVASALLDTYSKRGMPSDACKLFSELKVYDTI------------ 304
                          V+  +A++ +Y + G+      L  E+ V D I            
Sbjct: 569 WQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEM-VLDGIRPDVFAVTSALH 627

Query: 305 ----------------------------LLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
                                       + N ++ +Y  C  +E+A+ IF  + NK +IS
Sbjct: 628 AFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVIS 687

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           WN++I G S+N  P E+  LF +M  L  R +  ++  ++ A A+ISSLE G ++ A   
Sbjct: 688 WNTLIGGYSRNNFPNESFSLFSDM-LLQFRPNAVTMTCILPAAASISSLERGREIHAYAL 746

Query: 397 IIGLDSDQIISTSLVDFYCKCG--------YD-------------------------ALA 423
             G   D   S +LVD Y KCG        +D                         A+A
Sbjct: 747 RRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIA 806

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
           LF +MR +G++P   +F+AIL AC H GL  EG+++F AM+ +Y I+P+++HY+C+VDL 
Sbjct: 807 LFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLL 866

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543
           +R G L EA+  IE MP E D  +W S+L GC  H +  L  KVA+++ +L+PEN   Y+
Sbjct: 867 SRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYV 926

Query: 544 QLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            L++I+A +  WE    +++ +  + + +  G SW +
Sbjct: 927 LLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIE 963



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 152/630 (24%), Positives = 261/630 (41%), Gaps = 111/630 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNST----LPIANRLLQMYMRCGNPTDALLLFDE 66
           ++Q C    S+   K+ H   ++     +T      +  RL+  Y++CG+  +A  +FD 
Sbjct: 103 VVQLCGEERSLEAAKRAHA-LIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDG 161

Query: 67  MPRR--NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALE 122
           MP +  +   W +++  + K G  ++++ LF  M           +S   K  + L +L 
Sbjct: 162 MPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLT 221

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+ IH  +   GL                      A  V N           ALI+ Y+
Sbjct: 222 EGEVIHGLLEKLGL--------------------GQACAVAN-----------ALIAVYS 250

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            CG+M DA RVFD      ++ WNSMI G  SN     A+ LF KM   G    + T+ S
Sbjct: 251 RCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLS 310

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL AC+ LG+   GK VHG++ K G++  +    + +D                     D
Sbjct: 311 VLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGID---------------------D 349

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNGSPIEALDLFCNMN 361
             L + ++ +Y  CG +  A+ +F  M +K  +  WN ++ G ++ G   E+L LF  M+
Sbjct: 350 AALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMH 409

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
           +L +  D+ +++ ++     +S    G      +  +G  +   +  +L+ FY K     
Sbjct: 410 ELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIG 469

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
           DA+ +FN M     +   I++ +++S C   GL  E  + F  M  Q             
Sbjct: 470 DAVLVFNRM----PRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQ------------- 512

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG---DKGLGRKVAERMIELDP 536
                  G   ++V L+  +P  A    W     G V HG     GL  + +     LD 
Sbjct: 513 -------GQELDSVTLLSVLPACAQSRYW---FAGRVVHGYSVKTGLIGETSLANALLDM 562

Query: 537 ENACAYIQ-LSSIFATSGE-----WEKSSLIRDIMREKHVGKLPGCSWA---DGIAFNCW 587
            + C+  Q  + IF + G+     W  +++I   MR     K+ G       DGI  + +
Sbjct: 563 YSNCSDWQSTNQIFRSMGQKNVVSW--TAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVF 620

Query: 588 FLDTMFLQLANFDEIKQHQSADFCDYIHGF 617
            + +     A  + +KQ +S      +HG+
Sbjct: 621 AVTSALHAFAGDESLKQGKS------VHGY 644


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 178/596 (29%), Positives = 289/596 (48%), Gaps = 103/596 (17%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G+ +H   +K G +   + +A+ L+ MY +     ++L +FDEMP R+  SWN +I  F
Sbjct: 125 LGRMIHTLVVKSGYVCDVV-VASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCF 183

Query: 83  MKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            + G  EK+L+LF  M     + N  S  + IS  ++  L  LE GK+IH   +  G + 
Sbjct: 184 YQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSR--LLWLERGKEIHRKCVKKGFEL 241

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D  + S+LV++YGKC                   CL               AR VF +  
Sbjct: 242 DEYVNSALVDMYGKCD------------------CLEV-------------AREVFQKMP 270

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
             S V WNSMI GY++  +    + + ++M   G     +TL S+L ACS    L HGK 
Sbjct: 271 RKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKF 330

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +HG+  +  V  D+ V  +L+D Y K                               CG 
Sbjct: 331 IHGYVIRSVVNADIYVNCSLIDLYFK-------------------------------CGE 359

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
              A+ +F         SWN MI      G+  +A++++  M  + ++ D  +  SV+ A
Sbjct: 360 ANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPA 419

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------- 418
           C+ +++LE G+Q+   ++   L++D+++ ++L+D Y KCG                    
Sbjct: 420 CSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSW 479

Query: 419 -------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         +AL  F+EM+  G+KP  +T  A+LSAC H GL+ EG K+F  M+ 
Sbjct: 480 TVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRS 539

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD-VGMWSSILRGCVAHGDKGLG 524
           +Y I+P IEHYSCM+D+  RAG L EA  +I+Q P  +D   + S++   C  H +  LG
Sbjct: 540 KYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLG 599

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            ++A  ++E  P++A  Y+ L +++A+   W+ +  +R  M+E  + K PGCSW +
Sbjct: 600 DRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIE 655



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 124/526 (23%), Positives = 232/526 (44%), Gaps = 86/526 (16%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMP--------RRNCFSWNAMIEGFMKLGHKEKSLQLF 95
           +++LL +   C N T +L     +         RR+     ++I  +        +  +F
Sbjct: 3   SSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVF 62

Query: 96  NVMPQKND-FSWNMLISGFAKADL--AALEYGKQ-IHSHILVNGLDFDSVLGSSLVNLYG 151
                ++D + WN L+SG++K  +    LE  K+ ++  I V     DS    +++  YG
Sbjct: 63  ENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVP----DSFTFPNVIKAYG 118

Query: 152 KCGDFNSANQVLNMMKEPDDFC----LSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
             G       +  ++ +    C     S+L+  YA      ++ +VFD   +     WN+
Sbjct: 119 ALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNT 178

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           +IS +  + E  +AL LF +M  +G   ++ +L   +SACS L +LE GK++H    K G
Sbjct: 179 VISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKG 238

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
              D  V SAL+D Y K                               C  +E A+ +F+
Sbjct: 239 FELDEYVNSALVDMYGK-------------------------------CDCLEVAREVFQ 267

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
            MP KSL++WNSMI G    G     +++   M     R  + +L S++ AC+   +L  
Sbjct: 268 KMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLH 327

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------------- 418
           G+ +   V    +++D  ++ SL+D Y KCG                             
Sbjct: 328 GKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYIS 387

Query: 419 ----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
               + A+ ++++M + GVKP ++TFT++L AC     +++G++   ++  +  ++ +  
Sbjct: 388 VGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSIS-ESRLETDEL 446

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
             S ++D++++ G   EA  +   +P + DV  W+ ++    +HG 
Sbjct: 447 LLSALLDMYSKCGNEKEAFRIFNSIP-KKDVVSWTVMISAYGSHGQ 491



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 184/445 (41%), Gaps = 99/445 (22%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K +H  IL  GL  D VL  SL+N+Y  C D  SA  V                      
Sbjct: 24  KLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFEN------------------- 64

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASV 243
                    FD  +D    +WNS++SGY  N+   + L +F ++    + + D+ T  +V
Sbjct: 65  ---------FDIRSDV--YIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNV 113

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           + A  +LG    G+ +H    K G + DV+VAS+L+  Y+K  +  ++ ++F E+   D 
Sbjct: 114 IKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDV 173

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
              NT+I+ +                                Q+G   +AL+LF  M   
Sbjct: 174 ASWNTVISCF-------------------------------YQSGEAEKALELFGRMESS 202

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
               +  SL   ISAC+ +  LE G+++  +    G + D+ ++++LVD Y KC      
Sbjct: 203 GFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVA 262

Query: 418 --------------------GYDA-------LALFNEMRNTGVKPTIITFTAILSACDHC 450
                               GY A       + + N M   G +P+  T T+IL AC   
Sbjct: 263 REVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRS 322

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG-MWS 509
             +  G K+      +  ++ +I     ++DL+ + G  N A  +  +   + DV   W+
Sbjct: 323 RNLLHG-KFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKT--QKDVAESWN 379

Query: 510 SILRGCVAHGDKGLGRKVAERMIEL 534
            ++   ++ G+     +V ++M+ +
Sbjct: 380 VMISSYISVGNWFKAVEVYDQMVSV 404


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 176/554 (31%), Positives = 275/554 (49%), Gaps = 68/554 (12%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAA 120
           LFD +PR       A +    KL   ++ ++  + + ++     +  I    K  A  AA
Sbjct: 34  LFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCALSAA 93

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              G Q H H LV G+  D  + ++LV+ Y K G+ +SA      M   D   ++ LI G
Sbjct: 94  SCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLIIG 153

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+  G + +ARR+FD     +S  WNSMI+ Y    E  EAL LF +M R G   +A T+
Sbjct: 154 YSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITI 213

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            +V S C+  G LE G++      +   + +VIV +AL++ Y K                
Sbjct: 214 TTVFSICAKTGDLETGRRAKAWVSEED-LQNVIVHTALMEMYVK---------------- 256

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          C  I++A+  F  MP + +++W++MI G S NG P E+L+LF  M
Sbjct: 257 ---------------CRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERM 301

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
              + + ++ +L  V+SACA + S ELGEQ+ + +    L     + ++L+D Y KCG+ 
Sbjct: 302 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHV 361

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           DA+AL+ EM   GV+P  ITF A+L+AC
Sbjct: 362 ARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTAC 421

Query: 448 DHCGLVKEGQKWFDAMKW-QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
            H GLV +G  +F  MK  + H  P++EH +C+VDL  ++G L EA   I  M  E +  
Sbjct: 422 THAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAV 481

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W+++L  C AH D  L +  A +++ L+P ++  Y+ LS+I+A +G W     IRD+MR
Sbjct: 482 IWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMR 541

Query: 567 EKHVGKLPGCSWAD 580
            K++ KL   SW +
Sbjct: 542 SKNLQKLSAYSWIE 555



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 208/444 (46%), Gaps = 44/444 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+SC    +   G Q H H L +G+L     +   L+  Y + GN   A++ F+EMP +
Sbjct: 84  VLKSCALSAASCQGTQTHCHALVRGMLGDVF-VQTALVDFYAKNGNMDSAVMAFEEMPIK 142

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +    N +I G+ + G  E++ +LF+ MP+K   SWN +I+ +A       +    +   
Sbjct: 143 DPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHG--GEFQEALTLFDQ 200

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKM 187
           +L  G   +++  +++ ++  K GD  +  +    + E D       +AL+  Y  C  +
Sbjct: 201 MLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAI 260

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           ++ARR FDR      V W++MI+GY  N    E+L LF +M+      +  TL  VLSAC
Sbjct: 261 DEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSAC 320

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + LG  E G+Q+  +     +     + SAL+D Y+K                       
Sbjct: 321 AQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTK----------------------- 357

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                   CG +  A+ +F  M  K +I+WNSMI GL+ NG   +A+ L+  M    ++ 
Sbjct: 358 --------CGHVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQP 409

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS--TSLVDFYCKCG--YDALA 423
           ++ +  ++++AC +   ++ G   F  +      +   +     +VD  CK G  ++A  
Sbjct: 410 NEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYK 469

Query: 424 LFNEMRNTGVKPTIITFTAILSAC 447
              +M    V+P  + +T +LSAC
Sbjct: 470 FICDME---VEPNAVIWTTLLSAC 490



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 171/367 (46%), Gaps = 44/367 (11%)

Query: 190 ARRVFD---RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           AR +FD   R T      + S++S    + E  EA+   H  RR G +  +  +  VL +
Sbjct: 31  ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLH--RRGGAIP-SGCIPLVLKS 87

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+       G Q H HA   G++ DV V +AL+D Y+K G    A   F E+ + D I +
Sbjct: 88  CALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPM 147

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +I  YS  G +E+A+ +F +MP K+  SWNSMI   +  G   EAL LF  M +    
Sbjct: 148 NCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGAS 207

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------- 417
            +  ++ +V S CA    LE G +  A V+   L  + I+ T+L++ Y KC         
Sbjct: 208 PNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQ-NVIVHTALMEMYVKCRAIDEARRE 266

Query: 418 -----------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                            GY       ++L LF  M+ T  KP  +T   +LSAC   G  
Sbjct: 267 FDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 326

Query: 454 KEGQKWFDAMKWQYHIDPEIEHY-SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           + G++    ++ Q    P   +  S ++D++ + G +  A ++  +M  +  +  W+S++
Sbjct: 327 ELGEQIGSYIESQ--TLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIA-WNSMI 383

Query: 513 RGCVAHG 519
           RG   +G
Sbjct: 384 RGLALNG 390


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 176/605 (29%), Positives = 296/605 (48%), Gaps = 98/605 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C    +I  G+ LH + +K  +L S++ + + LL MY R G    +  +F EM
Sbjct: 111 LSVVLKACGQSSNIAYGESLHAYAVKTSLL-SSVYVGSSLLDMYKRVGKIDKSCRVFSEM 169

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--WNMLISGFAKADLAALEYGK 125
           P RN  +W A+I G +  G  ++ L  F+ M +  + S  +   I+  A A L  ++YGK
Sbjct: 170 PFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGK 229

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH+H++V G      + +SL  +Y +CG+              D  CL           
Sbjct: 230 AIHTHVIVRGFVTTLCVANSLATMYTECGEMQ------------DGLCL----------- 266

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                   F+  ++   V W S+I  Y    ++ +A+  F KMR + V  +  T AS+ S
Sbjct: 267 --------FENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFS 318

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+SL  L  G+Q+H +   +G+ D + V+++++  YS                      
Sbjct: 319 ACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYS---------------------- 356

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                    +CG +  A  +F+ M  + +ISW+++I G  Q G   E    F  M +   
Sbjct: 357 ---------TCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGT 407

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           +   F+LAS++S   N++ +E G QV A     GL+ +  + +SL++ Y KCG       
Sbjct: 408 KPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASM 467

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +A+ LF +    G +P  +TF ++L+AC H G 
Sbjct: 468 IFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQ 527

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           +  G  +F+ M+  Y++ P  EHY CMVDL  RAG L++A  +I +M ++ D  +W+++L
Sbjct: 528 LDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLL 587

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C A GD   GR+ AER++ELDP  A A + L++I++++G  E+++ +R  M+ K V K
Sbjct: 588 IACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIK 647

Query: 573 LPGCS 577
            PG S
Sbjct: 648 EPGWS 652



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/541 (21%), Positives = 230/541 (42%), Gaps = 118/541 (21%)

Query: 29  LHFLKKGILNSTLPIANRL---------LQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           +  L+K +  + + I+N++         L+  +  GN   A  +FD+MP  +  SW ++I
Sbjct: 19  ISLLQKPVEENIVRISNQVMVKFDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSII 78

Query: 80  EGFMKLGHKEKSLQLFNVM--------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHI 131
           + ++   + +++L LF+ M        P  +  S  +   G +    + + YG+ +H++ 
Sbjct: 79  KRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQS----SNIAYGESLHAYA 134

Query: 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
           +   L     +GSSL+++Y + G                               K++ + 
Sbjct: 135 VKTSLLSSVYVGSSLLDMYKRVG-------------------------------KIDKSC 163

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
           RVF      ++V W ++I+G +      E L  F +M R+  L D  T A  L AC+ L 
Sbjct: 164 RVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLR 223

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
            +++GK +H H    G +  + VA++L                                T
Sbjct: 224 QVKYGKAIHTHVIVRGFVTTLCVANSL-------------------------------AT 252

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
           +Y+ CG ++D   +F  M  + ++SW S+IV   + G  ++A++ F  M    +  ++ +
Sbjct: 253 MYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQT 312

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------------- 417
            AS+ SACA++S L  GEQ+   V  +GL+    +S S++  Y  C              
Sbjct: 313 FASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMR 372

Query: 418 -------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                              G +    F+ MR +G KPT     ++LS   +  ++ EG +
Sbjct: 373 CRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVI-EGGR 431

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
              A+   + ++      S +++++++ G + EA  +  +   + D+   ++++ G   H
Sbjct: 432 QVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRD-DIVSLTAMINGYAEH 490

Query: 519 G 519
           G
Sbjct: 491 G 491



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 174/402 (43%), Gaps = 76/402 (18%)

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           +NQV  M+K   +  L +LI    N G +  AR+VFD+      V W S+I  Y++ N  
Sbjct: 34  SNQV--MVKFDPNSHLRSLI----NAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNS 87

Query: 219 TEALLLFHKMR--RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
            EAL+LF  MR   + V  D S L+ VL AC     + +G+ +H +A K  ++  V V S
Sbjct: 88  DEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGS 147

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           +LLD Y + G    +C++FSE                               MP ++ ++
Sbjct: 148 SLLDMYKRVGKIDKSCRVFSE-------------------------------MPFRNAVT 176

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           W ++I GL   G   E L  F  M++ +   D ++ A  + ACA +  ++ G+ +   V 
Sbjct: 177 WTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVI 236

Query: 397 IIGLDSDQIISTSLVDFYCKCG--YDALALFN---------------------------- 426
           + G  +   ++ SL   Y +CG   D L LF                             
Sbjct: 237 VRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVE 296

Query: 427 ---EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
              +MRN+ V P   TF ++ SAC     +  G++          ++  +   + M+ ++
Sbjct: 297 TFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQ-LHCNVLSLGLNDSLSVSNSMMKMY 355

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRG-CVA-HGDKGL 523
           +  G L  A  L + M    D+  WS+I+ G C A  G++G 
Sbjct: 356 STCGNLVSASVLFQGMRCR-DIISWSTIIGGYCQAGFGEEGF 396



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 170/380 (44%), Gaps = 81/380 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +  +C +   +  G+QLH + L  G LN +L ++N +++MY  CGN   A +LF  M
Sbjct: 313 FASMFSACASLSRLVWGEQLHCNVLSLG-LNDSLSVSNSMMKMYSTCGNLVSASVLFQGM 371

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             R+  SW+ +I G+ + G  E+  + F+ M Q      DF+   L+S     ++A +E 
Sbjct: 372 RCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLS--VSGNMAVIEG 429

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+H+  L  GL+ +S + SSL+N+Y KCG    A+ +       D   L+A+I+GYA 
Sbjct: 430 GRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAE 489

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            GK                                 EA+ LF K  + G   D+ T  SV
Sbjct: 490 HGK-------------------------------SKEAIDLFEKSLKVGFRPDSVTFISV 518

Query: 244 LSACSSLGFLEHG----------------KQVHGHA----CKVGVI-------------- 269
           L+AC+  G L+ G                K+ +G      C+ G +              
Sbjct: 519 LTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKK 578

Query: 270 DDVIVASALLDTYSK----RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
           DDV+  + L+   +K    RG    A +   EL       L T+  +YSS G +E+A ++
Sbjct: 579 DDVVWTTLLIACKAKGDIERG--RRAAERILELDPTCATALVTLANIYSSTGNLEEAANV 636

Query: 326 FRTMPNKSLIS---WNSMIV 342
            + M  K +I    W+S+ +
Sbjct: 637 RKNMKAKGVIKEPGWSSIKI 656


>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
 gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
          Length = 752

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 175/593 (29%), Positives = 312/593 (52%), Gaps = 68/593 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  +++ G+   A  LFD MP ++  S+  M++  MK G  + +++L+   P  +   +
Sbjct: 160 MVSEHVKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVAFF 219

Query: 107 NMLISGFAKADL---AALEYGKQIHSHILVNGL-------------DFDSVLG------- 143
             +I+GF + +L   A   + K +   +  N +             +FD  +G       
Sbjct: 220 TAMIAGFVRNELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAIK 279

Query: 144 -----------SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
                      +SL+ LY + GD  +A++V + M+  D    +AL+  YA  G +  ARR
Sbjct: 280 WNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARR 339

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           V D   + + V W+++I+ +    +  EAL L+ +M   G   + S  +SVLSAC++L  
Sbjct: 340 VLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACATLHD 399

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L  G ++H +A K+G    + V+S+L+D Y K    +DA ++F+ L   +T+  N++I+ 
Sbjct: 400 LRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLISG 459

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           YS  G++ +A+ +F+ MP ++  SWN+MI G ++N    +AL+ FC M        + +L
Sbjct: 460 YSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEITL 519

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
           +SV+ ACAN+ SLE+G+ V A +  +G++ +  + T+L D Y K G              
Sbjct: 520 SSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQMPE 579

Query: 419 -------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                               +++ LF  M    + P   TF AIL AC HCGLV++   +
Sbjct: 580 KNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQAIHY 639

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           F+ M+  + I P+ +HY+CMVD+ ARAG L EA  L+ ++P + D   WSS+L  C  + 
Sbjct: 640 FETMQ-AHGIPPKDKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSSWSSLLSACNTYR 698

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
           +K +G + A+++ EL+ +N   Y+ LS+++A+ G+W+ ++  R +M+   + K
Sbjct: 699 NKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGPRLKK 751



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 217/452 (48%), Gaps = 69/452 (15%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           +K  +   ++ + N L+ +Y+R G+   A  +FD+M  R+  SW A+++ + +LG  E +
Sbjct: 278 IKWNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGA 337

Query: 92  LQLFNVMPQKNDFSWNMLISGFAK---------------------------------ADL 118
            ++ + MP++N+ SW+ LI+   +                                 A L
Sbjct: 338 RRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACATL 397

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G +IH++ L  G      + SSL+++Y KC     A ++ N + E +  C ++LI
Sbjct: 398 HDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLI 457

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           SGY+  GKM +A  +F +    ++  WN+MISGY  N    +AL  F  M  +G +    
Sbjct: 458 SGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEI 517

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL+SVL AC++L  LE GK VH    K+G+ D++ + +AL D Y+K              
Sbjct: 518 TLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKS------------- 564

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             G ++ ++ +F  MP K+ I+W +M+ GL++NG   E++ LF 
Sbjct: 565 ------------------GDLDSSRRMFYQMPEKNNITWTAMVQGLAENGFAEESILLFE 606

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           NM    +  ++ +  +++ AC++   +E     F  +   G+       T +VD   + G
Sbjct: 607 NMIANRIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKDKHYTCMVDVLARAG 666

Query: 419 Y--DALALFNEMRNTGVKPTIITFTAILSACD 448
              +A  L  ++ +   K    +++++LSAC+
Sbjct: 667 RLPEAEELLMKVPS---KLDTSSWSSLLSACN 695



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 165/386 (42%), Gaps = 100/386 (25%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C T H +  G ++H + LK G  +S   +++ L+ MY +C   TDA  +F
Sbjct: 384 ISCFSSVLSACATLHDLRGGTRIHANALKMGFSSSLF-VSSSLIDMYCKCKQCTDAQRIF 442

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------- 115
           + +P +N   WN++I G+   G   ++ +LF  MP +N  SWN +ISG+A+         
Sbjct: 443 NSLPEKNTVCWNSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALN 502

Query: 116 ------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
                                   A+L +LE GK +H+ I+  G++ +  +G++L ++Y 
Sbjct: 503 YFCAMLASGQIPGEITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYA 562

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           K GD +S+ ++   M E ++                               + W +M+ G
Sbjct: 563 KSGDLDSSRRMFYQMPEKNN-------------------------------ITWTAMVQG 591

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG------KQVHG---- 261
              N    E++LLF  M  N +  +  T  ++L ACS  G +E         Q HG    
Sbjct: 592 LAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPK 651

Query: 262 ---HACKVGVID-------------------DVIVASALL---DTYSKRGMPSDACKLFS 296
              + C V V+                    D    S+LL   +TY  + +   A K   
Sbjct: 652 DKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSSWSSLLSACNTYRNKEIGERAAKKLH 711

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDA 322
           EL+  +T     +  +Y+SCG+ +DA
Sbjct: 712 ELEKDNTAGYVLLSNMYASCGKWKDA 737



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 118/295 (40%), Gaps = 75/295 (25%)

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRG------------MPSDACKLFSELKVYDTILL 306
           +H H  + G+  D  VAS LL  Y+               + +DA   F+    YD    
Sbjct: 107 LHAHTLRSGLAADRSVASNLLTAYAAFARAADRDRAFRDCVSADAASSFT----YD---- 158

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
             M++ +   G I  A+ +F  MP KS++S+ +M+  L + GS  +A+ L+         
Sbjct: 159 -FMVSEHVKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLY--------- 208

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFN 426
            ++  L SV                F    I G   +++              DA  +F 
Sbjct: 209 -ERCPLYSV---------------AFFTAMIAGFVRNELHK------------DAFPVFR 240

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD--------AMKWQYHIDPEIEHYSC 478
           +M    V+P ++T   ++ AC     V  G+  FD        A+KW    +  IE ++ 
Sbjct: 241 KMLRCSVRPNVVTLICVIKAC-----VGAGE--FDLAMGVVGLAIKWNL-FEKSIEVHNS 292

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           ++ L+ R G    A  + + M    DV  W+++L      GD    R+V + M E
Sbjct: 293 LITLYLRMGDAAAAHRVFDDMEVR-DVVSWTALLDVYAELGDLEGARRVLDAMPE 346


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 187/608 (30%), Positives = 300/608 (49%), Gaps = 99/608 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++ +    I +  +LH + LK    +S   +   L+  Y +CG   DA  +FDE+P R
Sbjct: 141 LLKTASQLRDIVLTTKLHCNILKSNAADSF--VLTSLVDAYSKCGKLRDARKVFDEIPDR 198

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SW +MI  +++    E+ L LFN M +     N F+   L++   K  L  L  GK 
Sbjct: 199 SVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTK--LGCLHQGKW 256

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H +++ NG++ +S L +SL+N+Y KCGD   A  V       D+F +S        CG 
Sbjct: 257 VHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVF------DEFSVS-------TCGG 303

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            +D             V W +MI GY        AL LF   +   +L ++ TLAS+LSA
Sbjct: 304 GDDL------------VFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSA 351

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ L  +  GK +H    K G +DD  + ++L+D Y+K G+  DA  +F+     D +  
Sbjct: 352 CAQLENIVMGKLLHVLVVKYG-LDDTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSW 410

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N++I+                               G +Q+GS  EALDLF  M      
Sbjct: 411 NSVIS-------------------------------GYAQSGSAYEALDLFNRMRMESFL 439

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG------- 418
            D  ++  V+SACA++ + ++G  +       GL S  I + T+L++FY KCG       
Sbjct: 440 PDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARM 499

Query: 419 -YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
            +D                         +LALF +M    + P  + FT +L+AC H G+
Sbjct: 500 VFDGMGEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGM 559

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+EG   FD M  + +  P ++HY+CMVDL ARAG L EA++ I++MP +  VG++ + L
Sbjct: 560 VEEGLMIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFL 619

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            GC  H +   G     RM+EL P+ AC Y+ +S+++A+ G W     +R++++++ + K
Sbjct: 620 HGCGLHSNFDFGEVAIRRMLELHPDQACYYVLISNLYASDGRWGMVKEVREMIKQRGLNK 679

Query: 573 LPGCSWAD 580
           +PG S  +
Sbjct: 680 VPGVSLVE 687



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 136/297 (45%), Gaps = 37/297 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL +C    +I +GK LH+  +K G+ +++L   N L+ MY +CG   DA  +F   
Sbjct: 345 LASLLSACAQLENIVMGKLLHVLVVKYGLDDTSL--RNSLVDMYAKCGLIPDAHYVFATT 402

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGK 125
             ++  SWN++I G+ + G   ++L LFN M  ++     + + G   A A + A + G 
Sbjct: 403 VDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGL 462

Query: 126 QIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
            +H   L  GL   S+ +G++L+N Y KCGD  SA  V + M E +              
Sbjct: 463 SLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKN-------------- 508

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                            +V W +MI G     +   +L LF  M +  ++ +     ++L
Sbjct: 509 -----------------AVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLL 551

Query: 245 SACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +ACS  G +E G  +    CK +  +  +   + ++D  ++ G   +A     ++ V
Sbjct: 552 AACSHSGMVEEGLMIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPV 608



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 165/404 (40%), Gaps = 78/404 (19%)

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
            P D   + LIS YA+ G +  AR +F R    +   +  +I  +  N+  +  +  ++ 
Sbjct: 68  HPPD---TTLISLYASFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYNL 124

Query: 228 MRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            R   G   D    + +L   S L  +    ++H +  K    D  ++ S L+D YSK G
Sbjct: 125 ARTTLGSFNDLVVFSILLKTASQLRDIVLTTKLHCNILKSNAADSFVLTS-LVDAYSKCG 183

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
              DA K+F E+                               P++S++SW SMIV   Q
Sbjct: 184 KLRDARKVFDEI-------------------------------PDRSVVSWTSMIVAYVQ 212

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           N    E L LF  M +  L  + F++ S+++AC  +  L  G+ V   V   G++ +  +
Sbjct: 213 NECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYL 272

Query: 407 STSLVDFYCKCG--------YD-------------------------------ALALFNE 427
           +TSL++ Y KCG        +D                               AL LF +
Sbjct: 273 ATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTD 332

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
            +   + P  +T  ++LSAC     +  G K    +  +Y +D +    + +VD++A+ G
Sbjct: 333 KKWYRILPNSVTLASLLSACAQLENIVMG-KLLHVLVVKYGLD-DTSLRNSLVDMYAKCG 390

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            + +A + +     + DV  W+S++ G    G       +  RM
Sbjct: 391 LIPDA-HYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRM 433


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 188/610 (30%), Positives = 300/610 (49%), Gaps = 74/610 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL  C++   +   K +H   +  G+    + +  +LL + ++ G+   A LLFD++
Sbjct: 42  LHHLLDQCSSMKRL---KLVHAQIILHGLAAQVVTLG-KLLSLCVQEGDLRYAHLLFDQI 97

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
           P+ N F +N +I G+       KSL LF  M    P  N F++  ++    KA  A   Y
Sbjct: 98  PQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVL----KACAAKPFY 153

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            + +  H                              Q + +   P     +A+++ Y  
Sbjct: 154 WEAVIVH-----------------------------AQAIKLGMGPHACVQNAILTAYVA 184

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C  +  AR+VFD  +D + V WNSMI+GY       EA+LLF +M + GV  D  TL S+
Sbjct: 185 CRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSL 244

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSA S    L+ G+ VH +    GV  D IV +AL+D Y+K G    A  +F ++   D 
Sbjct: 245 LSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDV 304

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           +   +M+  Y++ G +E+A  IF  MP K+++SWNS+I  L Q G   EA++LF  M   
Sbjct: 305 VSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCIS 364

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            +  D  +L S++S C+N   L LG+Q    +    +     +  SL+D Y KCG     
Sbjct: 365 GVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTA 424

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +A+ +F  M+ +G+ P  ITFT +LSAC H 
Sbjct: 425 IDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHS 484

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV  G+ +FD M   + I P +EHY+CMVDL  R G L EA+ LI++MP + DV +W +
Sbjct: 485 GLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGA 544

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  +G+  + +++ ++++EL   N+  Y+ LS++++ S  W+    IR IM +  +
Sbjct: 545 LLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGI 604

Query: 571 GKLPGCSWAD 580
            K    S+ +
Sbjct: 605 KKCRAISFIE 614


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 165/545 (30%), Positives = 282/545 (51%), Gaps = 71/545 (13%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKADLAALEYGK 125
           N FSWN  I GF+   +  +++ L+  + Q      +++++ +L    A+  L+ +  G 
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACAR--LSLIRMGS 127

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +I  H+L   L FDS                             D F  +A+I    +CG
Sbjct: 128 EILGHVL--HLGFDS-----------------------------DIFVSNAVIHLLVSCG 156

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++ AR++FD++     V WNSMI+GY+      EAL  + +M+  G+  D  T+  V+S
Sbjct: 157 DLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVS 216

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           +C+ L  L+ G++ H +  + G+   V +A+AL+D Y K G    A KLF  +     + 
Sbjct: 217 SCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVS 276

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
             TM+  Y+  G ++ A  +F  MP+K ++ WN+MI G        EAL LF  M  +++
Sbjct: 277 WTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNI 336

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             D+ ++ S +SAC+ + +L++G  +   +    L  +  + T+L+D Y KCG       
Sbjct: 337 NPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQ 396

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                     + A+A F+EM +  V P  +TF  +LSAC H GL
Sbjct: 397 VFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGL 456

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+EG+K+F  M  ++++ P+++HYSCMVDL  RAG L EA  LI+ MP EAD  +W ++ 
Sbjct: 457 VEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALF 516

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  HG+  +G + A +++++DP ++  Y+ L++++  +  W+++   R +MR++ V K
Sbjct: 517 FACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEK 576

Query: 573 LPGCS 577
            PGCS
Sbjct: 577 TPGCS 581



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 137/324 (42%), Gaps = 66/324 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ SC     + +G++ H +  + G L  T+P+AN L+ MYM+CGN   A  LFD M  +
Sbjct: 214 VVSSCAQLEDLDLGRESHCYIEENG-LKLTVPLANALMDMYMKCGNLESARKLFDSMTNK 272

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------------- 117
              SW  M+ G+ + G  + + +LF+ MP K+   WN +I G+  A+             
Sbjct: 273 TMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQ 332

Query: 118 --------------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
                               L AL+ G  IH +I  + L  +  LG++L+++Y KCG   
Sbjct: 333 AMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKIT 392

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
            A QV                               F      +S+ W ++ISG   +  
Sbjct: 393 KAIQV-------------------------------FQELPGRNSLTWTAIISGLALHGN 421

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVAS 276
              A+  F +M  N V+ D  T   +LSAC   G +E G++     + K  +   +   S
Sbjct: 422 AHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYS 481

Query: 277 ALLDTYSKRGMPSDACKLFSELKV 300
            ++D   + G+  +A +L   + +
Sbjct: 482 CMVDLLGRAGLLEEAEELIKSMPI 505


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 176/611 (28%), Positives = 318/611 (52%), Gaps = 69/611 (11%)

Query: 36  ILNSTLPIA-NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           ++ +  P A + +++ +++ G+   A  LFD MP R+  S+  M++  MK G    +++L
Sbjct: 142 VVGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVEL 201

Query: 95  FNVMPQKNDFSWNMLISGFAKADLAA---------LEYGKQIHSHILVNGL-------DF 138
           +   P  +   +  +I+GF   +L           L  G   +   LV+ +       +F
Sbjct: 202 YRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEF 261

Query: 139 D---SVLG---------------SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           D   S++G               +SL+ LY + GD ++A ++ + M+  D    +AL+  
Sbjct: 262 DLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA  G +  ARRV D   + + V W ++++ +       EA+ L+ +M  +G   + S  
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SVL AC+SL  L  G+++H    K+   ++V V+SAL+D Y K     DA  +F  L  
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQ 441

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + +  N++I+ YS+  ++ +A+ +F+ MP +++ SWNS+I G +QN   I+AL  F  M
Sbjct: 442 KNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAM 501

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                   + + +SV+ ACA++ SLE+G+ V A++  +G+     + T+L D Y K G  
Sbjct: 502 LASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDL 561

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +++ LF +M + G+ P   TF AIL AC
Sbjct: 562 DSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFAC 621

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV+    +F+ M+    I P+ +HY+CMVD+ ARAG L EA +L+ ++  +++   
Sbjct: 622 SHSGLVEHAMHYFEMMQ-ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANS 680

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W+++L  C  + +K +G + A+R+ ELD +N   Y+ LS+++A+ G+W+ ++ +R +M+ 
Sbjct: 681 WAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKG 740

Query: 568 KHVGKLPGCSW 578
            ++ K  GCSW
Sbjct: 741 INLKKDGGCSW 751



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 213/450 (47%), Gaps = 65/450 (14%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           +K  +L+  L + N L+ +Y+R G+   A  +FDEM  R+  SW A+++ + +LG  E +
Sbjct: 272 MKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331

Query: 92  LQLFNVMPQKNDFSWNMLIS-----GFAK----------------------------ADL 118
            ++ + MP++N+ SW  L++     G AK                            A L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G++IH+  L      +  + S+L+++Y KC     A  +   + + +  C ++LI
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           SGY+N  KM +A  +F +    +   WNS+ISGY  N +  +AL  FH M  +G      
Sbjct: 452 SGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEI 511

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T +SVL AC+SL  LE GK VH    K+G+ + + V +AL D Y+K              
Sbjct: 512 TFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKS------------- 558

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF 
Sbjct: 559 ------------------GDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFE 600

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           +M    +  ++ +  +++ AC++   +E     F  +   G+       T +VD   + G
Sbjct: 601 DMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAG 660

Query: 419 YDALALFNEMRNTGVKPTIITFTAILSACD 448
           + A A  + +     K    ++ A+LSAC+
Sbjct: 661 HLAEAE-DLLLKIESKSEANSWAALLSACN 689



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 208/497 (41%), Gaps = 110/497 (22%)

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKC-------GDFNSANQVLNMMKEPDDFCLSALIS 179
           IH+H LV+GL  D  + S L+  Y          G F     V+        F    ++ 
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVG---AASPFAYDFMVR 156

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNS-------------------------------M 208
            +   G +  ARR+FD   + S V + +                               M
Sbjct: 157 EHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAM 216

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           I+G++ N    +AL +FH+M   GV  +  TL SV+ AC   G  +    + G A K  +
Sbjct: 217 IAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNL 276

Query: 269 ID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
           +D ++ V ++L+  Y ++G    A ++F E++V D +    ++ VY+  G +E A+ +  
Sbjct: 277 LDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLD 336

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
            MP ++ +SW +++    Q G+  EA+ L+  M     R +    +SV+ ACA++  L  
Sbjct: 337 EMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRS 396

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------------------GY-- 419
           G ++  +   +   ++  +S++L+D YCKC                          GY  
Sbjct: 397 GRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSN 456

Query: 420 -----DALALFNEM--RN-----------------------------TGVKPTIITFTAI 443
                +A  LF +M  RN                             +G  P  ITF+++
Sbjct: 457 NSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSV 516

Query: 444 LSACDH-CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           L AC   C L  E  K   A   +  I   I   + + D++A++G L+ +  +  +MP  
Sbjct: 517 LLACASLCSL--EMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKR 574

Query: 503 ADVGMWSSILRGCVAHG 519
            DV  W+++++G   +G
Sbjct: 575 NDVA-WTAMIQGLAENG 590



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 132/328 (40%), Gaps = 64/328 (19%)

Query: 259 VHGHACKVGVIDDVIVASALL-----------------DTYSKRGMPS------------ 289
           +H HA   G+  D  VAS LL                 D  S  G  S            
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHV 159

Query: 290 ------DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
                  A +LF  +     +   TM+      G + DA  ++R  P  S+  + +MI G
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG---- 399
              N  P +AL +F  M    +  ++ +L SVI AC      +L       ++I+G    
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLA------MSIVGLAMK 273

Query: 400 ---LDSDQIISTSLVDFYCKCGYDALA---LFNEMRNTGVKPTIITFTAILSACDHCGLV 453
              LD +  +  SL+  Y + G DA A   +F+EM    V    +++TA+L      G +
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKG-DADAARRMFDEMEVRDV----VSWTALLDVYAELGDL 328

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSS 510
           +  ++  D M  +  +      +  +V    + G   EAV+L  QM  +    ++  +SS
Sbjct: 329 EGARRVLDEMPERNEVS-----WGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSS 383

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPEN 538
           +L  C +  D   GRK+  + +++   N
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSN 411


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 176/611 (28%), Positives = 318/611 (52%), Gaps = 69/611 (11%)

Query: 36  ILNSTLPIA-NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           ++ +  P A + +++ +++ G+   A  LFD MP R+  S+  M++  MK G    +++L
Sbjct: 142 VVGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVEL 201

Query: 95  FNVMPQKNDFSWNMLISGFAKADLAA---------LEYGKQIHSHILVNGL-------DF 138
           +   P  +   +  +I+GF   +L           L  G   +   LV+ +       +F
Sbjct: 202 YRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEF 261

Query: 139 D---SVLG---------------SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           D   S++G               +SL+ LY + GD ++A ++ + M+  D    +AL+  
Sbjct: 262 DLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA  G +  ARRV D   + + V W ++++ +       EA+ L+ +M  +G   + S  
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SVL AC+SL  L  G+++H    K+   ++V V+SAL+D Y K     DA  +F  L  
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQ 441

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + +  N++I+ YS+  ++ +A+ +F+ MP +++ SWNS+I G +QN   I+AL  F  M
Sbjct: 442 KNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAM 501

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                   + + +SV+ ACA++ SLE+G+ V A++  +G+     + T+L D Y K G  
Sbjct: 502 LASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDL 561

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +++ LF +M + G+ P   TF AIL AC
Sbjct: 562 DSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFAC 621

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV+    +F+ M+    I P+ +HY+CMVD+ ARAG L EA +L+ ++  +++   
Sbjct: 622 SHSGLVEHAMHYFEMMQ-ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANS 680

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W+++L  C  + +K +G + A+R+ ELD +N   Y+ LS+++A+ G+W+ ++ +R +M+ 
Sbjct: 681 WAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKG 740

Query: 568 KHVGKLPGCSW 578
            ++ K  GCSW
Sbjct: 741 INLKKDGGCSW 751



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 213/450 (47%), Gaps = 65/450 (14%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           +K  +L+  L + N L+ +Y+R G+   A  +FDEM  R+  SW A+++ + +LG  E +
Sbjct: 272 MKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331

Query: 92  LQLFNVMPQKNDFSWNMLIS-----GFAK----------------------------ADL 118
            ++ + MP++N+ SW  L++     G AK                            A L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G++IH+  L      +  + S+L+++Y KC     A  +   + + +  C ++LI
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           SGY+N  KM +A  +F +    +   WNS+ISGY  N +  +AL  FH M  +G      
Sbjct: 452 SGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEI 511

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T +SVL AC+SL  LE GK VH    K+G+ + + V +AL D Y+K              
Sbjct: 512 TFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKS------------- 558

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF 
Sbjct: 559 ------------------GDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFE 600

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           +M    +  ++ +  +++ AC++   +E     F  +   G+       T +VD   + G
Sbjct: 601 DMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAG 660

Query: 419 YDALALFNEMRNTGVKPTIITFTAILSACD 448
           + A A  + +     K    ++ A+LSAC+
Sbjct: 661 HLAEAE-DLLLKIESKSEANSWAALLSACN 689



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 208/497 (41%), Gaps = 110/497 (22%)

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKC-------GDFNSANQVLNMMKEPDDFCLSALIS 179
           IH+H LV+GL  D  + S L+  Y          G F     V+        F    ++ 
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVG---AASPFAYDFMVR 156

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNS-------------------------------M 208
            +   G +  ARR+FD   + S V + +                               M
Sbjct: 157 EHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAM 216

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           I+G++ N    +AL +FH+M   GV  +  TL SV+ AC   G  +    + G A K  +
Sbjct: 217 IAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNL 276

Query: 269 ID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
           +D ++ V ++L+  Y ++G    A ++F E++V D +    ++ VY+  G +E A+ +  
Sbjct: 277 LDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLD 336

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
            MP ++ +SW +++    Q G+  EA+ L+  M     R +    +SV+ ACA++  L  
Sbjct: 337 EMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRS 396

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------------------GY-- 419
           G ++  +   +   ++  +S++L+D YCKC                          GY  
Sbjct: 397 GRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSN 456

Query: 420 -----DALALFNEM--RN-----------------------------TGVKPTIITFTAI 443
                +A  LF +M  RN                             +G  P  ITF+++
Sbjct: 457 NSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSV 516

Query: 444 LSACDH-CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           L AC   C L  E  K   A   +  I   I   + + D++A++G L+ +  +  +MP  
Sbjct: 517 LLACASLCSL--EMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKR 574

Query: 503 ADVGMWSSILRGCVAHG 519
            DV  W+++++G   +G
Sbjct: 575 NDVA-WTAMIQGLAENG 590



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 132/328 (40%), Gaps = 64/328 (19%)

Query: 259 VHGHACKVGVIDDVIVASALL-----------------DTYSKRGMPS------------ 289
           +H HA   G+  D  VAS LL                 D  S  G  S            
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHV 159

Query: 290 ------DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
                  A +LF  +     +   TM+      G + DA  ++R  P  S+  + +MI G
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG---- 399
              N  P +AL +F  M    +  ++ +L SVI AC      +L       ++I+G    
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLA------MSIVGLAMK 273

Query: 400 ---LDSDQIISTSLVDFYCKCGYDALA---LFNEMRNTGVKPTIITFTAILSACDHCGLV 453
              LD +  +  SL+  Y + G DA A   +F+EM    V    +++TA+L      G +
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKG-DADAARRMFDEMEVRDV----VSWTALLDVYAELGDL 328

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSS 510
           +  ++  D M  +  +      +  +V    + G   EAV+L  QM  +    ++  +SS
Sbjct: 329 EGARRVLDEMPERNEVS-----WGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSS 383

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPEN 538
           +L  C +  D   GRK+  + +++   N
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSN 411


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 182/608 (29%), Positives = 296/608 (48%), Gaps = 100/608 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A + +SC    +  +G QLH H LK      ++ I    L MY +C    DA  +F+ +P
Sbjct: 243 ASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSI-IGTATLDMYAKCERMFDAWKVFNTLP 301

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML-ISGFAKADLAALEY--GK 125
                S+NA+I G+ +     K+L +F  + Q+N+  ++ + +SG   A      +  G 
Sbjct: 302 NPPRQSYNAIIVGYARQDQGLKALDIFQSL-QRNNLGFDEISLSGALTACSVIKRHLEGI 360

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H   +  GL F+  + ++++++YGKCG    A             CL           
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALMEA-------------CL----------- 396

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                  +F+      +V WN++I+ +  N E  + L LF  M R+ +  D  T  SV+ 
Sbjct: 397 -------IFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVK 449

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+    L +G ++HG   K G+  D  V SAL+D Y K GM  +A K+ + L+   T+ 
Sbjct: 450 ACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVS 509

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N++I+ +SS  + E+A+  F  M    +I                              
Sbjct: 510 WNSIISGFSSQKQSENAQRYFSQMLEMGIIP----------------------------- 540

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------- 417
             D ++ A+V+  CAN++++ELG+Q+ A++  + L SD  I+++LVD Y KC        
Sbjct: 541 --DNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRL 598

Query: 418 -------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                    G  A+ LF EM+   VKP    F ++L AC H G 
Sbjct: 599 MFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGY 658

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V +G  +F  M   Y +DP++EHYSCMVDL  R+G +NEA+ LIE MPFEAD  +W ++L
Sbjct: 659 VDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLL 718

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C   G+  +  K    +++LDP+++ AY+ L++++A  G W + + +R IM+   + K
Sbjct: 719 SNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKK 778

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 779 EPGCSWIE 786



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 141/555 (25%), Positives = 247/555 (44%), Gaps = 105/555 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C+      +G Q+H   ++ G  N  +   + L+ MY +C    DA  +F EM
Sbjct: 141 FAVILKACSGIEDYGLGLQVHCLAIQMGFENDVV-TGSALVDMYSKCKKLDDAFRVFREM 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-ADLAALEYGK 125
           P RN   W+A+I G+++     + L+LF  M +     S +   S F   A L+A + G 
Sbjct: 200 PERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGT 259

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H H L +   +DS++G++ +++Y K                               C 
Sbjct: 260 QLHGHALKSDFAYDSIIGTATLDMYAK-------------------------------CE 288

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           +M DA +VF+   +     +N++I GY   ++  +AL +F  ++RN +  D  +L+  L+
Sbjct: 289 RMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALT 348

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS +     G Q+HG A K G+  ++ VA+ +LD Y K G   +AC +F E        
Sbjct: 349 ACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEE-------- 400

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                  M  +  +SWN++I    QN   ++ L LF +M +  +
Sbjct: 401 -----------------------MERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTM 437

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             D F+  SV+ ACA   +L  G ++  R+   G+  D  + ++LVD Y KCG       
Sbjct: 438 EPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEK 497

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +A   F++M   G+ P   T+  +L  C +   
Sbjct: 498 IHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMAT 557

Query: 453 VKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           ++ G++     +K Q H D  I   S +VD++++ G + ++  + E+ P + D   WS++
Sbjct: 558 IELGKQIHAQILKLQLHSDVYIA--STLVDMYSKCGNMQDSRLMFEKAP-KRDYVTWSAM 614

Query: 512 LRGCVAHGDKGLGRK 526
           +    A+   GLG K
Sbjct: 615 I---CAYAYHGLGEK 626



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 150/612 (24%), Positives = 254/612 (41%), Gaps = 159/612 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +LQ C+   +++ GKQ+H   +  G +  T+ +AN LLQ Y +      A  +FD M
Sbjct: 9   FSHILQKCSNLKALNPGKQVHTQMIVTGFV-PTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-------------- 113
           P+R+  SWN +I G+  +G+   +  LF+ MP+++  SWN L+S +              
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 114 -------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                              A + +     G Q+H   +  G + D V GS+LV++Y KC 
Sbjct: 128 RMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
             + A +V   M E +  C SA+                               I+GY+ 
Sbjct: 188 KLDDAFRVFREMPERNLVCWSAV-------------------------------IAGYVQ 216

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N+   E L LF  M + G+    ST ASV  +C+ L   + G Q+HGHA K     D I+
Sbjct: 217 NDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSII 276

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            +A LD Y+K                               C R+ DA  +F T+PN   
Sbjct: 277 GTATLDMYAK-------------------------------CERMFDAWKVFNTLPNPPR 305

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
            S+N++IVG ++    ++ALD+F ++ + +L  D+ SL+  ++AC+ I     G Q+   
Sbjct: 306 QSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGL 365

Query: 395 VTIIGLDSDQIISTSLVDFYCKCG---------------------------------YDA 421
               GL  +  ++ +++D Y KCG                                    
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKT 425

Query: 422 LALFNEMRNTGVKPTIITFTAILSACD-----------HCGLVKEGQ--KWFDAMKWQYH 468
           L+LF  M  + ++P   T+ +++ AC            H  ++K G    WF        
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVG------ 479

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
                   S +VD++ + G L EA  +  ++  +  V  W+SI+ G  +       ++  
Sbjct: 480 --------SALVDMYGKCGMLMEAEKIHARLEEKTTVS-WNSIISGFSSQKQSENAQRYF 530

Query: 529 ERMIELD--PEN 538
            +M+E+   P+N
Sbjct: 531 SQMLEMGIIPDN 542



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T + +L  CS+L  L  GKQVH      G +  + VA+ LL  Y K    + A K+F  +
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              D I  NT+I  Y+  G +  A+ +F +MP + ++SWNS++     NG   +++++F 
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M  L +  D  + A ++ AC+ I    LG QV      +G ++D +  ++LVD Y KC 
Sbjct: 128 RMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 419 Y--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
              DA  +F EM     +  ++ ++A+++         EG K F  M
Sbjct: 188 KLDDAFRVFREMP----ERNLVCWSAVIAGYVQNDRFIEGLKLFKDM 230



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 78/175 (44%), Gaps = 14/175 (8%)

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFN 426
           K + + ++  C+N+ +L  G+QV  ++ + G      ++  L+ FYCK      A  +F+
Sbjct: 6   KLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFD 65

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
            M    V    I++  ++      G +   Q  FD+M      + ++  ++ ++  +   
Sbjct: 66  RMPQRDV----ISWNTLIFGYAGIGNMGFAQSLFDSMP-----ERDVVSWNSLLSCYLHN 116

Query: 487 GCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
           G   +++ +  +M       D   ++ IL+ C    D GLG +V    I++  EN
Sbjct: 117 GVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFEN 171


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 176/612 (28%), Positives = 300/612 (49%), Gaps = 104/612 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA+LL++C+ +     G Q+H   +  G     L + N L+ MY +C     A  +FD M
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMG-FGFDLIMNNDLIDMYGKCSRVDLACSVFDRM 65

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             RN  SW A++ G+++ G+ + SL L   M     + N+F+++  +   A   L  +E 
Sbjct: 66  LERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLK--ACGALGVVEN 123

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G QIH   + +G ++ SV+G++ +++Y KCG    A QV N M          L+S    
Sbjct: 124 GMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMP------FRNLVS---- 173

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                                WN+MI+G+       ++L+LF +M+  G + D  T  S 
Sbjct: 174 ---------------------WNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTST 212

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDV--IVASALLDTYSKRGMPSDACKLFSELKVY 301
           L AC +LG +  G Q+H      G    +  I+ASA++D Y+K                 
Sbjct: 213 LKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAK----------------- 255

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                         CG + +A+ +F  +  K+LISW+++I G +Q G+ +EA+DLF  + 
Sbjct: 256 --------------CGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLR 301

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
           +    +D F L+ ++   A+++ +E G+Q+   +  +    D  ++ S++D Y KCG   
Sbjct: 302 ESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTE 361

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                           A+ LFN M+  G++   + + A+LSAC 
Sbjct: 362 EAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACS 421

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GL++E Q++F  +   + + P IEHY+CMVD+  RAG L EA NLIE M  + + G+W
Sbjct: 422 HSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIW 481

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L  C  HG+  +GR+V E +  +D +N   Y+ +S+I+A +G W++   +R +++ K
Sbjct: 482 QTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAK 541

Query: 569 HVGKLPGCSWAD 580
            + K  G SW +
Sbjct: 542 GLKKEAGQSWVE 553


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 176/611 (28%), Positives = 318/611 (52%), Gaps = 69/611 (11%)

Query: 36  ILNSTLPIA-NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           ++ +  P A + +++ +++ G+   A  LFD MP R+  S+  M++  MK G    +++L
Sbjct: 142 VVGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVEL 201

Query: 95  FNVMPQKNDFSWNMLISGFAKADLAA---------LEYGKQIHSHILVNGL-------DF 138
           +   P  +   +  +I+GF   +L           L  G   +   LV+ +       +F
Sbjct: 202 YRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEF 261

Query: 139 D---SVLG---------------SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           D   S++G               +SL+ LY + GD ++A ++ + M+  D    +AL+  
Sbjct: 262 DLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA  G +  ARRV D   + + V W ++++ +       EA+ L+ +M  +G   + S  
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SVL AC+SL  L  G+++H    K+   ++V V+SAL+D Y K     DA  +F  L  
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQ 441

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + +  N++I+ YS+  ++ +A+ +F+ MP +++ SWNS+I G +QN   I+AL  F  M
Sbjct: 442 KNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAM 501

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                   + + +SV+ ACA++ SLE+G+ V A++  +G+     + T+L D Y K G  
Sbjct: 502 LASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDL 561

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +++ LF +M + G+ P   TF AIL AC
Sbjct: 562 DSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFAC 621

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV+    +F+ M+    I P+ +HY+CMVD+ ARAG L EA +L+ ++  +++   
Sbjct: 622 SHSGLVEHAMHYFEMMQ-ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANS 680

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W+++L  C  + +K +G + A+R+ ELD +N   Y+ LS+++A+ G+W+ ++ +R +M+ 
Sbjct: 681 WAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKG 740

Query: 568 KHVGKLPGCSW 578
            ++ K  GCSW
Sbjct: 741 INLKKDGGCSW 751



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 213/450 (47%), Gaps = 65/450 (14%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           +K  +L+  L + N L+ +Y+R G+   A  +FDEM  R+  SW A+++ + +LG  E +
Sbjct: 272 MKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331

Query: 92  LQLFNVMPQKNDFSWNMLIS-----GFAK----------------------------ADL 118
            ++ + MP++N+ SW  L++     G AK                            A L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G++IH+  L      +  + S+L+++Y KC     A  +   + + +  C ++LI
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           SGY+N  KM +A  +F +    +   WNS+ISGY  N +  +AL  FH M  +G      
Sbjct: 452 SGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEI 511

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T +SVL AC+SL  LE GK VH    K+G+ + + V +AL D Y+K              
Sbjct: 512 TFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKS------------- 558

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF 
Sbjct: 559 ------------------GDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFE 600

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           +M    +  ++ +  +++ AC++   +E     F  +   G+       T +VD   + G
Sbjct: 601 DMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAG 660

Query: 419 YDALALFNEMRNTGVKPTIITFTAILSACD 448
           + A A  + +     K    ++ A+LSAC+
Sbjct: 661 HLAEA-EDLLLKIESKSEANSWAALLSACN 689



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 208/497 (41%), Gaps = 110/497 (22%)

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKC-------GDFNSANQVLNMMKEPDDFCLSALIS 179
           IH+H LV+GL  D  + S L+  Y          G F     V+        F    ++ 
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVG---AASPFAYDFMVR 156

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNS-------------------------------M 208
            +   G +  ARR+FD   + S V + +                               M
Sbjct: 157 EHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAM 216

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           I+G++ N    +AL +FH+M   GV  +  TL SV+ AC   G  +    + G A K  +
Sbjct: 217 IAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNL 276

Query: 269 ID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
           +D ++ V ++L+  Y ++G    A ++F E++V D +    ++ VY+  G +E A+ +  
Sbjct: 277 LDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLD 336

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
            MP ++ +SW +++    Q G+  EA+ L+  M     R +    +SV+ ACA++  L  
Sbjct: 337 EMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRS 396

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------------------GY-- 419
           G ++  +   +   ++  +S++L+D YCKC                          GY  
Sbjct: 397 GRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSN 456

Query: 420 -----DALALFNEM--RN-----------------------------TGVKPTIITFTAI 443
                +A  LF +M  RN                             +G  P  ITF+++
Sbjct: 457 NSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSV 516

Query: 444 LSACDH-CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           L AC   C L  E  K   A   +  I   I   + + D++A++G L+ +  +  +MP  
Sbjct: 517 LLACASLCSL--EMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKR 574

Query: 503 ADVGMWSSILRGCVAHG 519
            DV  W+++++G   +G
Sbjct: 575 NDVA-WTAMIQGLAENG 590



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 132/328 (40%), Gaps = 64/328 (19%)

Query: 259 VHGHACKVGVIDDVIVASALL-----------------DTYSKRGMPS------------ 289
           +H HA   G+  D  VAS LL                 D  S  G  S            
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHV 159

Query: 290 ------DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
                  A +LF  +     +   TM+      G + DA  ++R  P  S+  + +MI G
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG---- 399
              N  P +AL +F  M    +  ++ +L SVI AC      +L       ++I+G    
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLA------MSIVGLAMK 273

Query: 400 ---LDSDQIISTSLVDFYCKCGYDALA---LFNEMRNTGVKPTIITFTAILSACDHCGLV 453
              LD +  +  SL+  Y + G DA A   +F+EM    V    +++TA+L      G +
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKG-DADAARRMFDEMEVRDV----VSWTALLDVYAELGDL 328

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSS 510
           +  ++  D M  +  +      +  +V    + G   EAV+L  QM  +    ++  +SS
Sbjct: 329 EGARRVLDEMPERNEVS-----WGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSS 383

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPEN 538
           +L  C +  D   GRK+  + +++   N
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSN 411


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 185/620 (29%), Positives = 293/620 (47%), Gaps = 100/620 (16%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           +    +++LQ C     +  G  +H + +K  I N  + I N+LL +Y++ G+   A  L
Sbjct: 58  KFHQFSQILQECTDAGDLRTGMSVHTYLVKLNI-NGFILIWNKLLSLYLKFGHIHHAHQL 116

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSL-QLFNVMPQKNDFSWNMLISGFAKA--DLAA 120
           FD MPRR+  S+N MI   ++  +    L  L++ M +++    ++  +G   A   L A
Sbjct: 117 FDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIA 176

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L      H+H +  GL  +  +GSSLV+                               G
Sbjct: 177 LRLRGIFHAHTVRCGLSSNEFVGSSLVD-------------------------------G 205

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA   K+ DA + F+   +   V WN MI G   NN    A+ +F +M +  V  D  TL
Sbjct: 206 YAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTL 265

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            S++  CS  G L+HG Q HG A K+G                          L  E  +
Sbjct: 266 TSIIKTCSKPGDLKHGMQFHGSAIKLG--------------------------LAHETPI 299

Query: 301 YDTILLNTMITVYSSCGR-IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           Y     N +IT+YS C + +     IF ++   ++ISW +MI G  QN    EA+ LF  
Sbjct: 300 Y-----NALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKE 354

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-- 417
           M +L +R + FS +S++    N+++LE G+Q+ AR+       D  ++ +L+D Y KC  
Sbjct: 355 MLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGS 414

Query: 418 -------------------------------GYDALALFNEMRNTGVKPTIITFTAILSA 446
                                          G +AL +  EM++ G+ P  +TF   L A
Sbjct: 415 LEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYA 474

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GLV+EG + F  M   +++ P+ EH++C+VD+  RAG LNEA N I++M  E+DV 
Sbjct: 475 CSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVL 534

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C  HG+  LG K A++++EL P     Y+ L++I+A  G WE   ++R+ + 
Sbjct: 535 VWETLLGACRVHGEMVLGEKSAQKIMELQPGRHGPYVLLANIYAERGSWEDKVMVREKLV 594

Query: 567 EKHVGKLPGCSWADGIAFNC 586
              + K  GCSW      +C
Sbjct: 595 SHGLKKQVGCSWVALETMSC 614



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 41/265 (15%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT- 58
           + R+D   L  ++++C+    +  G Q H   +K G+ + T PI N L+ MY +C     
Sbjct: 257 NVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHET-PIYNALITMYSKCEKGVA 315

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFA 114
             + +F  +   N  SW AMI GFM+    E+++ LF  M     ++NDFS++ ++  + 
Sbjct: 316 SPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVY- 374

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
             +LA LE GKQIH+ I+ +    D  + ++L+++Y KCG    A+ V   M + D    
Sbjct: 375 -GNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSC 433

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + +I  Y   GK                                 EAL +  +M+  G++
Sbjct: 434 TTMIMSYGQHGK-------------------------------GKEALEILAEMKSEGLV 462

Query: 235 EDASTLASVLSACSSLGFLEHGKQV 259
            D  T    L ACS  G +E G +V
Sbjct: 463 PDGVTFLGCLYACSHGGLVEEGVRV 487


>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
           [Vitis vinifera]
 gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
          Length = 617

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 183/608 (30%), Positives = 299/608 (49%), Gaps = 75/608 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++    +S   G+ LH   +K G  +  +  A  L  MYM+    + AL +F+EMP R
Sbjct: 39  LLKASAKLNSPLQGQILHTQLIKTG-FHLDIYAATALADMYMKLHLLSYALKVFEEMPHR 97

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N  S N  I GF + G+  ++L  F  +   N F  N +         A++E   Q+H  
Sbjct: 98  NLPSLNVTISGFSRNGYFREALGAFKQVGLGN-FRPNSVTIASVLPACASVELDGQVHCL 156

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +  G+                               E D +  +A+++ Y+NCG++  A
Sbjct: 157 AIKLGV-------------------------------ESDIYVATAVVTMYSNCGELVLA 185

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSS 249
           ++VFD+  D + V +N+ ISG + N        +F  +   +G + ++ TL S+LSACS 
Sbjct: 186 KKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSK 245

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-VYDTILLNT 308
           L ++  G+Q+HG   K+ +  D +V +AL+D YSK G    A  +F EL    + +  N+
Sbjct: 246 LLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNS 305

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
           MI      G+ + A  +F  +  + L     +WN+MI G SQ G  +EA   F  M    
Sbjct: 306 MIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAG 365

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA- 423
           +     S+ S++ AC+ +S+L+ G+++        +D+D+ IST+L+D Y KCG+  LA 
Sbjct: 366 VIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLAR 425

Query: 424 ----------------------------------LFNEMRNTGVKPTIITFTAILSACDH 449
                                             +FN+M+   V+P   T  +ILS C H
Sbjct: 426 RVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSH 485

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            G +  G + F  M   Y ++P  EH+ CMVDL  R+G L EA  LI +MP EA V +++
Sbjct: 486 TGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP-EASVSVFA 544

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           S+L  C  H D  LG ++A+++ EL+P++   ++ LS+I+A  G W     +R++M ++ 
Sbjct: 545 SLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDRG 604

Query: 570 VGKLPGCS 577
           + K PGCS
Sbjct: 605 LKKPPGCS 612



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 160/363 (44%), Gaps = 72/363 (19%)

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           I+  +SN    EAL L+ K+  + VLE   T   +L A + L     G+ +H    K G 
Sbjct: 5   IAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGF 64

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
             D+  A+AL D Y K  + S A K+F E                               
Sbjct: 65  HLDIYAATALADMYMKLHLLSYALKVFEE------------------------------- 93

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           MP+++L S N  I G S+NG   EAL  F  +   + R +  ++ASV+ ACA   S+EL 
Sbjct: 94  MPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACA---SVELD 150

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LFNE------------------- 427
            QV      +G++SD  ++T++V  Y  CG   LA  +F++                   
Sbjct: 151 GQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQN 210

Query: 428 -------------MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                        + ++G  P  +T  +ILSAC     ++ G++    +  +  I+ +  
Sbjct: 211 GAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQ-IHGLVVKIEINFDTM 269

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
             + +VD++++ GC + A  +  ++    ++  W+S++ G + +G   +  ++ E   +L
Sbjct: 270 VGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFE---QL 326

Query: 535 DPE 537
           +PE
Sbjct: 327 EPE 329


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 180/602 (29%), Positives = 292/602 (48%), Gaps = 85/602 (14%)

Query: 24  GKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            KQLH       IL S  P   +A++L+ +Y +  +   A  +FD++P +N FS+NAM+ 
Sbjct: 43  AKQLHARL----ILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLI 98

Query: 81  GFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
            +        +L LF+ +   N   + S   L+   +   L+ ++ GK++H  +L  G D
Sbjct: 99  SYSLHNRHGDALDLFSSLASSNLVNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFD 158

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
                                           D F  +ALI+ Y+ C  ++ +R+VFDR 
Sbjct: 159 -------------------------------ADVFVENALITYYSKCYDLDLSRKVFDRM 187

Query: 198 TDTSSVMWNSMISGYISNN--EDTEALLL----FHKMRRNGVLEDASTLASVLSACSSLG 251
           T    V WNSMISGY      ED + L      F   R NGV     T+ SVL AC    
Sbjct: 188 TKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGV-----TVVSVLQACGQTQ 242

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
            L  G +VH       V  D+ V +AL+  Y+K G    A +LF E+   D +    +I+
Sbjct: 243 DLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIIS 302

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
                G ++ +  +FR M  + L +WN++I GL QN      LDL   M  L  R +  +
Sbjct: 303 GLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVT 362

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD----------- 420
           L+SV+S  A  SSL+ G+++ +    IG   +  ++T+++D Y K GY            
Sbjct: 363 LSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSK 422

Query: 421 ----------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                 AL LF+EM   G++P  +TFTA+L+AC HCG+V +  +
Sbjct: 423 DRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWE 482

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
            F++M  +Y I P +EHY+C+V    +A  L+EA   + +MP E    +W ++L G    
Sbjct: 483 IFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVWGALLHGASIS 542

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            D  LG+ V + + E++PEN   Y+ ++++++ +G W+++  +R+ M +  + K+PG SW
Sbjct: 543 SDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKVGLQKIPGSSW 602

Query: 579 AD 580
            +
Sbjct: 603 IE 604



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 177/375 (47%), Gaps = 32/375 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ+C     +  G ++H  F+    +   + + N L+ +Y +CG+   A  LFDEM  +
Sbjct: 234 VLQACGQTQDLAFGMEVH-KFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEK 292

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGKQIH 128
           +  ++ A+I G M  G+ ++SL+LF  M  +   +WN +I+G  + +     L+  +++ 
Sbjct: 293 DEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQ 352

Query: 129 S-HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           +     N +   SVL S++       G     +  + +    + +  +A+I  YA  G +
Sbjct: 353 ALGFRPNAVTLSSVL-STIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYL 411

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
             A+RVFD++ D S V+W ++IS Y  + +   AL LFH+M + G+  D  T  +VL+AC
Sbjct: 412 RGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAAC 471

Query: 248 SSLG------------FLEHGKQ--VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           +  G            F ++G Q  V  +AC VG +      S   +  SK  MP +   
Sbjct: 472 AHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSK--MPIEPSA 529

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG--LSQNGSPI 351
                KV+  +L    I+     G+     ++F   P     + N +I+    SQ G   
Sbjct: 530 -----KVWGALLHGASISSDVELGK-SVCDYLFEIEPEN---TGNYVIMANLYSQAGRWK 580

Query: 352 EALDLFCNMNKLDLR 366
           EA ++   MNK+ L+
Sbjct: 581 EADEVRERMNKVGLQ 595



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 134/304 (44%), Gaps = 18/304 (5%)

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           H++  +    D      +L   + L      KQ+H       V  +  +AS L+  YSK 
Sbjct: 13  HRLLTSAAGLDCGIYGHLLHHLTELRLPLQAKQLHARLILFSVTPENYLASKLVALYSKT 72

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
              + A  +F ++   +T   N M+  YS   R  DA  +F ++ + +L++  S+   L 
Sbjct: 73  NHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLASSNLVNNISITCLLK 132

Query: 346 QNGS-PIEALDLFCNMNKLDLRM----DKFSLASVISACANISSLELGEQVFARVTIIGL 400
              S  +  + L   ++   LR     D F   ++I+  +    L+L  +VF R+T    
Sbjct: 133 SLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMT---- 188

Query: 401 DSDQIISTSLVDFYCKCGY--DALALFNEMRN-TGVKPTIITFTAILSACDHCGLVKEGQ 457
             D +   S++  Y + G   D   L+ EM + +G +P  +T  ++L A   CG  ++  
Sbjct: 189 KRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQA---CGQTQDLA 245

Query: 458 KWFDAMKWQYHIDPEIEHYSC--MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
              +  K+      EI+   C  ++ L+A+ G L+ A  L ++M  E D   + +I+ G 
Sbjct: 246 FGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMS-EKDEVTYGAIISGL 304

Query: 516 VAHG 519
           + HG
Sbjct: 305 MLHG 308


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 183/610 (30%), Positives = 289/610 (47%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C    S+  GK LH   L+ G       +   L+ MY +CG   DAL +F ++
Sbjct: 54  LSTVLKGCANTGSLREGKVLHALALRSGCEIDEF-LGCSLVDMYSKCGTVYDALKVFTKI 112

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              +  +W+AMI G  + GH +++ +LF++M +K    N F+ + L+S     ++  L Y
Sbjct: 113 RNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVS--TATNMGDLRY 170

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+ IH  I   G + D+++ + L+ +Y K                             + 
Sbjct: 171 GQSIHGCICKYGFESDNLVSNPLIMMYMK-----------------------------SR 201

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C  + D  +VF+  T+   V WN+++SG+  +        +F++M   G   +  T  SV
Sbjct: 202 C--VEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISV 259

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L +CSSL   E GKQVH H  K    DD  V +AL+D Y+K                   
Sbjct: 260 LRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAK------------------- 300

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                     + C  +EDA   F  + N+ + SW  +I G +Q     +A+  F  M + 
Sbjct: 301 ----------ARC--LEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQRE 348

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            ++ ++++LAS +S C+++++LE G Q+ A     G   D  + ++LVD Y KCG     
Sbjct: 349 GIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHA 408

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         AL  F  M + G+ P   TF  +LSAC   
Sbjct: 409 EAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFM 468

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG+K FD+M   Y I+P IEHY+CMVD+  RAG  NE    IE+M       +W +
Sbjct: 469 GLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWET 528

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  HG+   G K A+++ E++P    +YI LS+IFA+ G W+    IR +M  + +
Sbjct: 529 VLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGI 588

Query: 571 GKLPGCSWAD 580
            K PGCSW +
Sbjct: 589 KKEPGCSWVE 598



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 218/504 (43%), Gaps = 106/504 (21%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADL 118
           LF  MP +N  SWNA++ G+ +LG  +K L+LF  M +     + F+ + ++ G A  + 
Sbjct: 7   LFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCA--NT 64

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            +L  GK +H+  L +G + D  LG SLV++Y K                          
Sbjct: 65  GSLREGKVLHALALRSGCEIDEFLGCSLVDMYSK-------------------------- 98

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                CG + DA +VF +  +   V W++MI+G        EA  LFH MRR G   +  
Sbjct: 99  -----CGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQF 153

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL+S++S  +++G L +G+ +HG  CK G   D +V++ L+  Y K              
Sbjct: 154 TLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMK-------------- 199

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                          S C  +ED   +F  M N  L+SWN+++ G   + +      +F 
Sbjct: 200 ---------------SRC--VEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFY 242

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC- 417
            M     + + F+  SV+ +C+++   E G+QV A +     D D  + T+LVD Y K  
Sbjct: 243 QMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKAR 302

Query: 418 -------------------------GY-------DALALFNEMRNTGVKPTIITFTAILS 445
                                    GY        A+  F +M+  G+KP   T  + LS
Sbjct: 303 CLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLS 362

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
            C H   ++ G++         H   +I   S +VDL+ + GC+  A  + + +    D+
Sbjct: 363 GCSHMATLENGRQLHAVAVKAGHFG-DIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDI 420

Query: 506 GMWSSILRGCVAHGDKGLGRKVAE 529
             W++I+ G   HG    G K  E
Sbjct: 421 VSWNTIISGYSQHGQ---GEKALE 441



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 154/361 (42%), Gaps = 66/361 (18%)

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           M  A R+F    + + V WN++++GY    +  + L LF KM+         TL++VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C++ G L  GK +H  A + G   D  +  +L+D YSK G   DA K+F++++  D +  
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           + MIT                               GL Q G   EA +LF  M +   R
Sbjct: 121 SAMIT-------------------------------GLDQQGHGQEAAELFHLMRRKGAR 149

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK--CGYDALAL 424
            ++F+L+S++S   N+  L  G+ +   +   G +SD ++S  L+  Y K  C  D   +
Sbjct: 150 PNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKV 209

Query: 425 FNEMRNT-------------------------------GVKPTIITFTAILSACDHCGLV 453
           F  M N                                G KP + TF ++L +C    L 
Sbjct: 210 FEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSL-LD 268

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            E  K   A   +   D +    + +VD++A+A CL +A    +++    D+  W+ I+ 
Sbjct: 269 PEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRL-VNRDIFSWTVIIS 327

Query: 514 G 514
           G
Sbjct: 328 G 328


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 189/652 (28%), Positives = 297/652 (45%), Gaps = 129/652 (19%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L    R G   DA  LFDE+PRRN  SWNAMI      G    +  LF+ MP ++ F
Sbjct: 46  NAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMPARDGF 105

Query: 105 SW--------------------------------NMLISGFAK--------ADLAALEYG 124
           SW                                N +ISG+AK        A L  +   
Sbjct: 106 SWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAP 165

Query: 125 KQIHSHILVNGLD-----------FDSVLGSSLVNL------YGKCGDFNSANQVLNMMK 167
             I  + ++ GL            FD +    +V+       Y + GD +SA  +   + 
Sbjct: 166 DIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVP 225

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
            P+      L++GY   G++ +AR +FDR  D +   WN M+SGY+  +   EA  LF +
Sbjct: 226 SPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTE 285

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M      +++ +  +++SA    G L+  K +          D     +AL+  Y +  M
Sbjct: 286 MPD----KNSISWTTMISALVRGGKLQEAKDLLDKM----PFDSFAAKTALMHGYLQSKM 337

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS-- 345
             DA  +F  L+V D +  NTMI+ Y  CG +++A  +F+ MPNK ++SWN+MI G +  
Sbjct: 338 IDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHD 397

Query: 346 -----------------------------QNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
                                        QNG  +EAL  F  M +   R D  + A  +
Sbjct: 398 GQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCL 457

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------- 419
           SACA++++L +G Q  + +   G   D     +L+  Y KCG                  
Sbjct: 458 SACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIV 517

Query: 420 ----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                           +A+++F EM +  V+P  +TF  +LSAC H GL+ EG  +F++M
Sbjct: 518 SWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSM 577

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
              Y + P  EHY+CMVDL  R+G L+EA  +I+ M  + + G+W ++L  C  H +  L
Sbjct: 578 TKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHEL 637

Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
            +  AE++ EL+P     Y+ LS+I A +G+W+++  +R  ++E+ V K PG
Sbjct: 638 AQLAAEKLYELEPHKTSNYVLLSNITAEAGKWDEAQNMRVFIKERGVHKTPG 689



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 209/476 (43%), Gaps = 46/476 (9%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N+ L    R G    A  LFD MP RN  S+NAM+    + G    + +LF+ +P++N 
Sbjct: 14  SNQELTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNT 73

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQV 162
            SWN +I+       A  ++G+   +  L + +   D    + +V+ Y + G+   A   
Sbjct: 74  VSWNAMIA-------ACSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDA 126

Query: 163 LNMMKEPDD---FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
           L+ M  P D    C +A+ISGYA  G+ +DA  +         + WNS++ G   N E  
Sbjct: 127 LDRM--PGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMV 184

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SAL 278
            A+  F +M       D  +   +L      G++  G          GV    +V+   L
Sbjct: 185 RAVKFFDEM----PARDMVSWNLMLE-----GYVRAGDVDSAAGLFAGVPSPNVVSWVTL 235

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L+ Y + G   +A +LF  +   +    N M++ Y     +E+A  +F  MP+K+ ISW 
Sbjct: 236 LNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWT 295

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV-FARVTI 397
           +MI  L + G   EA DL          +DK    S  +  A +      + +  AR+  
Sbjct: 296 TMISALVRGGKLQEAKDL----------LDKMPFDSFAAKTALMHGYLQSKMIDDARLIF 345

Query: 398 IGLD-SDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
            GL+  D +   +++  Y  CG   +A+ LF +M N      ++++  +++   H G ++
Sbjct: 346 DGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNK----DMVSWNTMIAGYAHDGQMR 401

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           +    F  M  +  +      ++ ++  F + G   EA+     M  +A    WS+
Sbjct: 402 KAVGIFRKMNQRNTVS-----WNSVISGFVQNGLCVEALQHFVLMRRDAKRADWST 452



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 130/285 (45%), Gaps = 38/285 (13%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H G       L + + N  +   N ++  Y   G    A+ +F +M +RN  SWN++I 
Sbjct: 364 VHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVIS 423

Query: 81  GFMKLGHKEKSLQLFNVM---PQKNDFS-WNMLISGFAKADLAALEYGKQIHSHILVNGL 136
           GF++ G   ++LQ F +M    ++ D+S +   +S  A ADLAAL  G+Q HS +  +G 
Sbjct: 424 GFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLS--ACADLAALHVGRQFHSLLARSGY 481

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
             DS  G++L++ Y KCG    A QV + M  PD    +ALI GYA              
Sbjct: 482 IGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYA-------------- 527

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                            SN   TEA+ +F +M  N V  D  T   VLSACS  G ++ G
Sbjct: 528 -----------------SNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEG 570

Query: 257 KQVHGHACKVGVIDDVIVASA-LLDTYSKRGMPSDACKLFSELKV 300
                   K   +  V    A ++D   + G  S+A ++   ++V
Sbjct: 571 FDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQV 615



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 19/255 (7%)

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L   ++ G  + A +LF  +   +T+  N M++  +  GRI DA+ +F  +P ++ +SWN
Sbjct: 18  LTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWN 77

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           +MI   S +G   +A DLF  M       D FS   ++S  A    L L      R+   
Sbjct: 78  AMIAACSDHGRVADARDLFDAMPA----RDGFSWTLMVSCYARAGELGLARDALDRMPG- 132

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
             D       +++  Y K G   DA+AL  EM      P II++ ++L      G +   
Sbjct: 133 --DKCTACYNAMISGYAKHGRFDDAVALLREM----PAPDIISWNSVLVGLTRNGEMVRA 186

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            K+FD M  +     ++  ++ M++ + RAG ++ A  L   +P   +V  W ++L G  
Sbjct: 187 VKFFDEMPAR-----DMVSWNLMLEGYVRAGDVDSAAGLFAGVP-SPNVVSWVTLLNGYC 240

Query: 517 AHGDKGLGRKVAERM 531
             G  G  R++ +R+
Sbjct: 241 RAGRIGEARELFDRI 255



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++HVG+Q H    + G +  +    N L+  Y +CG   +A  +FDEMP  +
Sbjct: 457 LSACADLAALHVGRQFHSLLARSGYIGDSFA-GNALISAYAKCGRILEARQVFDEMPAPD 515

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
             SWNA+I+G+   GH  +++ +F  M + ND
Sbjct: 516 IVSWNALIDGYASNGHGTEAISVFREM-EDND 546


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 177/597 (29%), Positives = 287/597 (48%), Gaps = 101/597 (16%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + +GKQ+H   ++ G L+  + + N L+ MY++ G+ + A  +F +M   +  SWN MI 
Sbjct: 951  LELGKQIHGIVMRSG-LDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMIS 1009

Query: 81   GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG----KQIHSHILVNGL 136
            G    G +E S+ +F  + + +       ++   +A  ++LE G     QIH+  +  G+
Sbjct: 1010 GCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRA-CSSLEGGYYLATQIHACAMKAGV 1068

Query: 137  DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
              DS                               F  +ALI  Y+  GKM +A  +F  
Sbjct: 1069 VLDS-------------------------------FVSTALIDVYSKRGKMEEAEFLFVN 1097

Query: 197  TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                    WN+++ GYI + +  +AL L+  M+ +G   D  TL +   A   L  L+ G
Sbjct: 1098 QDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQG 1157

Query: 257  KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
            KQ+H    K G   D+ V S +LD Y K                               C
Sbjct: 1158 KQIHAVVVKRGFNLDLFVTSGVLDMYLK-------------------------------C 1186

Query: 317  GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
            G +E A+ +F  +P+   ++W +MI G  +NG    AL  +  M    ++ D+++ A+++
Sbjct: 1187 GEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLV 1246

Query: 377  SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
             AC+ +++LE G Q+ A +  +    D  + TSLVD Y KCG                  
Sbjct: 1247 KACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIA 1306

Query: 419  ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                            +AL  F  M++ GV P  +TF  +LSAC H GLV E  + F +M
Sbjct: 1307 SWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSM 1366

Query: 464  KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
            +  Y I+PEIEHYSC+VD  +RAG + EA  +I  MPFEA   M+ ++L  C    D+  
Sbjct: 1367 QKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRET 1426

Query: 524  GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            G++VAE+++ L+P ++ AY+ LS+++A + +WE  +  R++MR+ +V K PG SW D
Sbjct: 1427 GKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVD 1483



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 147/590 (24%), Positives = 242/590 (41%), Gaps = 130/590 (22%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAM 78
            + +GK+ H   L  G       + N L+ MY +CG+ + A  LFD  P   R+  +WNA+
Sbjct: 672  LSLGKRAHARILTSGHHPDRF-VTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAI 730

Query: 79   IEGFMKLGHKEKS---LQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGKQIHSHILV 133
            +       H +KS     LF ++ +    +    ++   K  L  A+    + +H + + 
Sbjct: 731  LSALA--AHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVK 788

Query: 134  NGLDFDSVLGSSLVNLYGKCGDFNSANQVLN------------MMK-------------- 167
             GL +D  +  +LVN+Y K G    A  + +            MMK              
Sbjct: 789  IGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLL 848

Query: 168  ---------EPDDFCLSALISGYANCGK--------MNDARRVFDRTTDTSSVM-WNSMI 209
                      PDD  L  L S    C K           A ++F    D S V+ WN  +
Sbjct: 849  FSEFHRTGFRPDDVTLRTL-SRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKAL 907

Query: 210  SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
            S ++   E  EA+  F  M  + V  D  T   +L+  + L  LE GKQ+HG   + G+ 
Sbjct: 908  SRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLD 967

Query: 270  DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
              V V + L++ Y K G  S A  +F ++   D                           
Sbjct: 968  QVVSVGNCLINMYVKAGSVSRARSVFGQMNEVD--------------------------- 1000

Query: 330  PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE--- 386
                LISWN+MI G + +G    ++ +F ++ +  L  D+F++ASV+ AC   SSLE   
Sbjct: 1001 ----LISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRAC---SSLEGGY 1053

Query: 387  -LGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------GYD----------- 420
             L  Q+ A     G+  D  +ST+L+D Y K               G+D           
Sbjct: 1054 YLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGY 1113

Query: 421  --------ALALFNEMRNTGVKPTIITFT-AILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                    AL L+  M+ +G +   IT   A  +A    GL +  Q     +K  +++D 
Sbjct: 1114 IVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDL 1173

Query: 472  EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
             +   S ++D++ + G +  A  +  ++P   DV  W++++ GCV +G +
Sbjct: 1174 FVT--SGVLDMYLKCGEMESARRVFSEIPSPDDVA-WTTMISGCVENGQE 1220



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 146/623 (23%), Positives = 240/623 (38%), Gaps = 163/623 (26%)

Query: 19   HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN---------------------- 56
            H +H  + +H+   +  +L ST   A + LQ+Y+  G                       
Sbjct: 538  HGLHASEAIHVLKHELSVLKSTAIAAEQRLQVYILVGTGHHTRGSRTPARLPIAVQRFLL 597

Query: 57   --------PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS---------LQLFNVMP 99
                        LL   E  + +  S  AMI   M L  +  +           L + +P
Sbjct: 598  EEGIDFMETQPGLLREREGHKSDNPSPTAMIMALMHLRLRAATSTANPLTPRAHLIHSLP 657

Query: 100  QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 159
            Q     +++L    A +DL+    GK+ H+ IL +G                        
Sbjct: 658  Q----CFSILRQAIAASDLS---LGKRAHARILTSG------------------------ 686

Query: 160  NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS--VMWNSMISGYISNNE 217
                     PD F  + LI+ YA CG ++ AR++FD T DT+   V WN+++S   ++ +
Sbjct: 687  -------HHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHAD 739

Query: 218  DT-EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
             + +   LF  +RR+ V     TLA V   C         + +HG+A K+G+  DV VA 
Sbjct: 740  KSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAG 799

Query: 277  ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY-SSCGRIED-------------- 321
            AL++ Y+K G+  +A  LF  + V D +L N M+  Y  +C   E               
Sbjct: 800  ALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRP 859

Query: 322  --------------AKHI-----FRTMPNK---------SLISWNSMIVGLSQNGSPIEA 353
                           K+I     F+    K          +I WN  +    Q G   EA
Sbjct: 860  DDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEA 919

Query: 354  LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
            +D F +M    +  D  +   +++  A ++ LELG+Q+   V   GLD    +   L++ 
Sbjct: 920  VDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINM 979

Query: 414  YCKCG--YDALALFNEMR-------NTGVK------------------------PTIITF 440
            Y K G    A ++F +M        NT +                         P   T 
Sbjct: 980  YVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTV 1039

Query: 441  TAILSACD--HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL-IE 497
             ++L AC     G     Q    AMK    +D  +   + ++D++++ G + EA  L + 
Sbjct: 1040 ASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVS--TALIDVYSKRGKMEEAEFLFVN 1097

Query: 498  QMPFEADVGMWSSILRGCVAHGD 520
            Q  F  D+  W++I+ G +  GD
Sbjct: 1098 QDGF--DLASWNAIMHGYIVSGD 1118



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 14/167 (8%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTDALLLFD 65
             A L+++C+   ++  G+Q+H + +K   LN      +   L+ MY +CGN  DA  LF 
Sbjct: 1242 FATLVKACSLLTALEQGRQIHANIVK---LNCAFDPFVMTSLVDMYAKCGNIEDARGLFK 1298

Query: 66   EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLA 119
                R   SWNAMI G  + G+ +++LQ F       VMP +  F    ++S  + + L 
Sbjct: 1299 RTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIG--VLSACSHSGLV 1356

Query: 120  ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
            +  Y +  +S     G++ +    S LV+   + G    A +V++ M
Sbjct: 1357 SEAY-ENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSM 1402


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 177/603 (29%), Positives = 279/603 (46%), Gaps = 98/603 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++C    S+  G+ +H   L++ + N +  I N LL+MY  CG+  D   +FDEM  +
Sbjct: 93  LFEACGKLRSLADGRLIHDR-LRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMK 151

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIH 128
           N  SW  +I  + K G  EK+++LF+ M        + +     ++ L    LE GKQIH
Sbjct: 152 NLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIH 211

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           SH++   L+ +  + +++ N+Y                                 CG + 
Sbjct: 212 SHVIRAQLNANITVETAICNMY-------------------------------VRCGWLE 240

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            A+ VFD     ++V W  ++ GY    +   AL LF +M   GV  D    + VL  C 
Sbjct: 241 GAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCC 300

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            L   + G+Q+H H  K+G   +V V + L+D Y K                        
Sbjct: 301 GLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVK------------------------ 336

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  CG IE A   F  +   + +SW+++I G SQ+G   + + +F ++    + ++
Sbjct: 337 -------CGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLN 389

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------- 419
            F   SV  ACA  ++L +G Q        GL S     +++V  Y KCG          
Sbjct: 390 SFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFE 449

Query: 420 ------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +AL  F  M++ GV+P  +TF A+L+AC H GLV E
Sbjct: 450 SIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAE 509

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
            +++  +M   Y + P I+HY CM+D ++RAG L EA+ LI +MPFE D   W S+L GC
Sbjct: 510 AKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGC 569

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
            AH D  LG+  AE +  LDP +   YI L ++++  G+WE++  +R +M E+ + K   
Sbjct: 570 WAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVS 629

Query: 576 CSW 578
           CSW
Sbjct: 630 CSW 632



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 197/474 (41%), Gaps = 78/474 (16%)

Query: 124 GKQIHSHILVNGLDFD--SVLGSSLVNLYGKCGDFNS-------ANQVLNMMKEPDDFCL 174
           GK   +H  +  +D    SV   S   L+  CG   S        +++   +K P     
Sbjct: 66  GKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIE 125

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + L+  Y +CG   D ++VFD     + V W  +IS Y  N E  +A+ LF  M+ +G+ 
Sbjct: 126 NCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIR 185

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +++   S+L +C    FLE GKQ+H H  +  +  ++ V +A+ + Y +          
Sbjct: 186 PNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVR---------- 235

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                CG +E AK +F  M  ++ ++W  ++VG +Q      AL
Sbjct: 236 ---------------------CGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVAL 274

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +LF  M    + +D+F  + V+  C  +   ++G Q+ + +  +G +S+  + T LVDFY
Sbjct: 275 ELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFY 334

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            KCG                                  D + +F  +R+ GV      +T
Sbjct: 335 VKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYT 394

Query: 442 AILSAC-DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           ++  AC     L    Q   DA+K    +   +   S MV ++++ G L+ A    E + 
Sbjct: 395 SVFQACAAQANLNMGSQAHGDAIK--RGLVSYLYGESAMVTMYSKCGRLDYARRAFESID 452

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSG 553
            E D   W++I+ G   HG+         RM       NA  +I + +  + SG
Sbjct: 453 -EPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSG 505



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 99/272 (36%), Gaps = 76/272 (27%)

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N  +V LS+ G   EA D    M+  D+ +   S   +  AC  + SL  G  +  R+  
Sbjct: 56  NLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRR 115

Query: 398 IGLDSDQIISTSLVDFYCKCG--------YD-------------------------ALAL 424
              +    I   L+  YC CG        +D                         A+ L
Sbjct: 116 TVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRL 175

Query: 425 FNEMRNTGVKPTIITFTAILSAC-----------------------------------DH 449
           F++M+ +G++P    + ++L +C                                     
Sbjct: 176 FSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVR 235

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVG 506
           CG ++  +  FD M  Q  +      ++ ++  + +A  L  A+ L  +M  E    D  
Sbjct: 236 CGWLEGAKLVFDGMDAQNAVT-----WTGLMVGYTQAKKLEVALELFARMAMEGVELDEF 290

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
           ++S +L+ C    D  +GR++   +++L  E+
Sbjct: 291 VFSIVLKVCCGLEDWDMGRQIHSHIVKLGAES 322


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 178/612 (29%), Positives = 295/612 (48%), Gaps = 109/612 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG-NPTDALLLFDEM 67
           A LLQ+CN   S   G Q H H +K G L +   + N LL +Y + G    +   +FD  
Sbjct: 65  ASLLQTCNKVFSFIHGIQFHAHVVKSG-LETDRNVGNSLLSLYFKLGPGMRETRRVFDGR 123

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             ++  SW +M+ G++      K+L++F  M       N+F+ +  +   A ++L  +  
Sbjct: 124 FVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVK--ACSELGEVRL 181

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+  H  ++ +G +++  + S+L  LYG             + +EP D            
Sbjct: 182 GRCFHGVVITHGFEWNHFISSTLAYLYG-------------VNREPVD------------ 216

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLAS 242
                 ARRVFD   +   + W +++S +  N+   EAL LF+ M R  G++ D ST  +
Sbjct: 217 ------ARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGT 270

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL+AC +L  L+ GK++HG     G+  +V+V S+LLD Y K                  
Sbjct: 271 VLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGK------------------ 312

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG + +A+ +F  M  K+ +SW++++ G  QNG   +A+++F  M +
Sbjct: 313 -------------CGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEE 359

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
            DL    +   +V+ ACA ++++ LG+++  +    G   + I+ ++L+D Y K G    
Sbjct: 360 KDL----YCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDS 415

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +A++ FN+M   G+KP  I+F AIL+AC H
Sbjct: 416 ASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGH 475

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            G+V EG+ +F  M   Y I P  EHYSCM+DL  RAG   EA NL+E+     D  +W 
Sbjct: 476 TGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWG 535

Query: 510 SILRGCVAHGDKG-LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            +L  C A+ D   +  ++A+RM+EL+P+   +Y+ LS+++   G    +  IR +M  +
Sbjct: 536 VLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRR 595

Query: 569 HVGKLPGCSWAD 580
            V K  G SW D
Sbjct: 596 GVAKTVGQSWID 607



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 138/351 (39%), Gaps = 66/351 (18%)

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
           TEA+ + +    + +       AS+L  C+ +    HG Q H H  K G+  D  V ++L
Sbjct: 43  TEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSL 102

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L  Y K G P                              + + + +F     K  ISW 
Sbjct: 103 LSLYFKLG-PG-----------------------------MRETRRVFDGRFVKDAISWT 132

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           SM+ G       ++AL++F  M    L  ++F+L+S + AC+ +  + LG      V   
Sbjct: 133 SMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITH 192

Query: 399 GLDSDQIISTSLVDFYC--KCGYDALALFNEM---------------------------- 428
           G + +  IS++L   Y   +   DA  +F+EM                            
Sbjct: 193 GFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLF 252

Query: 429 ----RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
               R  G+ P   TF  +L+AC +   +K+G++    +     I   +   S ++D++ 
Sbjct: 253 YAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNVVVESSLLDMYG 311

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           + G + EA  +   M  +  V  WS++L G   +G+     ++   M E D
Sbjct: 312 KCGSVREARQVFNGMSKKNSVS-WSALLGGYCQNGEHEKAIEIFREMEEKD 361


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 183/602 (30%), Positives = 293/602 (48%), Gaps = 100/602 (16%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C+   ++   + +H H +K     + L +   ++ MY++C     A  LF  MP+R+ 
Sbjct: 62  KACSKLLNLKYSQIVHTHVVKSR-FQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDV 120

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIHSH 130
            SWN+MI GF +LG  ++ + LF  M  +   + ++ + G   + L+   L+  + IHS 
Sbjct: 121 ASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSF 180

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +  G+D D     S+ N +                           I+ YA CG+   A
Sbjct: 181 GIKIGIDTDV----SVSNTW---------------------------IAAYAKCGEFGLA 209

Query: 191 RRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
             VFD       + V WNSMI+GY    + ++A+  F KM   G   D ST+ S+LS+C 
Sbjct: 210 ETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCV 269

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
               L HGK +H H  +VG   D+ V                               +NT
Sbjct: 270 QPEVLFHGKLIHAHGIQVGCDSDIQV-------------------------------INT 298

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +I++YS CG I  A+++F  M  K+ +SW +MI G ++ G   EA+ LF  M  +  + D
Sbjct: 299 LISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPD 358

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
             ++ S++S C    +LELG+ +    T  GL  + ++  +L+D Y KCG          
Sbjct: 359 LVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFY 418

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +AL LF +M   G+KP  ITF A+L AC+H G +++
Sbjct: 419 TMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEK 478

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G + F+ M   Y I+P ++HYSCM DL  R G L EA   I+ MPF+ DVG+WS +L  C
Sbjct: 479 GWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSAC 538

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             H +  +G  VA  + EL+P+ A  Y+Q+++I+A++G+W++ + IR +M+     K PG
Sbjct: 539 KIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSPG 598

Query: 576 CS 577
            S
Sbjct: 599 KS 600



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 199/497 (40%), Gaps = 101/497 (20%)

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHIL 132
           WN+ I   +  G+  K+L LF  M Q      N+     AKA   L  L+Y + +H+H++
Sbjct: 22  WNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVV 81

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
            +    D  + +S+V++Y K                               C ++  A  
Sbjct: 82  KSRFQADLFVQTSVVDMYVK-------------------------------CSQLGFAYN 110

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           +F R        WNSMI G+         + LF +M   G+  D+ T+  +  +  SL  
Sbjct: 111 LFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKD 170

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L+  + +H    K+G+  DV V+                               NT I  
Sbjct: 171 LKMLESIHSFGIKIGIDTDVSVS-------------------------------NTWIAA 199

Query: 313 YSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
           Y+ CG    A+ +F  +    K+ +SWNSMI G +      +A+  F  M     R D  
Sbjct: 200 YAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLS 259

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------ 418
           ++ S++S+C     L  G+ + A    +G DSD  +  +L+  Y KCG            
Sbjct: 260 TILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNM 319

Query: 419 ---------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                 +A+ LF+ M   G KP ++T  +++S C   G ++ G 
Sbjct: 320 LGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELG- 378

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           KW D       +   +   + ++D++A+ G ++ A  L   MP E  +  W++++ GC  
Sbjct: 379 KWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTLIAGCAL 437

Query: 518 HGDKGLGRKVAERMIEL 534
           +G+      +  +M+EL
Sbjct: 438 NGEFKEALGLFFQMVEL 454



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 161/367 (43%), Gaps = 69/367 (18%)

Query: 190 ARRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           A + F+R ++  +V  WNS I+  ++     +ALLLF +M++NG+  +  T  SV  ACS
Sbjct: 6   ATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACS 65

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            L  L++ + VH H  K     D+ V ++++D Y K                        
Sbjct: 66  KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVK------------------------ 101

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  C ++  A ++F  MP + + SWNSMI+G +Q G     + LFC M    +R D
Sbjct: 102 -------CSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRAD 154

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD 420
             ++  +  +  ++  L++ E + +    IG+D+D  +S + +  Y KCG        +D
Sbjct: 155 SVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFD 214

Query: 421 ---------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                      A+  F +M   G +  + T  ++LS+C    ++
Sbjct: 215 GIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVL 274

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
             G K   A   Q   D +I+  + ++ ++++ G +  A  L + M  +  V  W++++ 
Sbjct: 275 FHG-KLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVS-WTAMIA 332

Query: 514 GCVAHGD 520
           G    GD
Sbjct: 333 GYAEKGD 339


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 195/686 (28%), Positives = 313/686 (45%), Gaps = 160/686 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+ C+    I  G ++H    K G  ++ + + N LL +Y  CG   DA  LFDEMP R
Sbjct: 165 VLKLCSDSFDICKGMEVHGVVFKLG-FDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPER 223

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL--------- 121
           +  SWN +I G + +          +    +N + W M++    K +L ++         
Sbjct: 224 DVVSWNTII-GLLSVNG--------DYTEARNYYFW-MILRSVIKPNLVSVISLLPISAA 273

Query: 122 ----EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
               E  ++IH + +  GLD      ++LV+ YGKCG   +  QV N   E ++   +++
Sbjct: 274 LEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSI 333

Query: 178 ISGYANCGKMNDARRVFDRT---------------------------------------T 198
           I+G A  G+  DA   F                                          T
Sbjct: 334 INGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGT 393

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKM-RRN-------------------------- 231
           +T   + NS+I  Y  +   TEA  +FH + RRN                          
Sbjct: 394 ETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQ 453

Query: 232 ----GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
               G   +A T  +VL AC+ LGFL  GK++H    ++G+  D+ V+++L+D Y+K   
Sbjct: 454 MQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAK--- 510

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
                                       CG +  A+++F T   K  +S+N +I+G S+ 
Sbjct: 511 ----------------------------CGCLHSARNVFNT-SRKDEVSYNILIIGYSET 541

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
              +++L+LF  M  L  + D  S   VISACAN+++L+ G++V        L S   +S
Sbjct: 542 DDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVS 601

Query: 408 TSLVDFYCKCGY---------------------------------DALALFNEMRNTGVK 434
            SL+DFY KCG                                   A+++F  MR+  V+
Sbjct: 602 NSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQ 661

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
             ++++ A+LSAC H GLV+ G ++F  M  Q  ++P   HY+CMVDL  RAG + EA  
Sbjct: 662 YDLVSYIAVLSACSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAK 720

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
           LI+Q+P   D  +W ++L  C  +G+  LGR+ AE + EL P++   YI LS+I+A +G 
Sbjct: 721 LIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGR 780

Query: 555 WEKSSLIRDIMREKHVGKLPGCSWAD 580
           W++++ IR++M+ +   K PGCSW  
Sbjct: 781 WDEANKIRELMKSRGAKKNPGCSWVQ 806



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 140/614 (22%), Positives = 250/614 (40%), Gaps = 145/614 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR- 69
           LL  C+   S+   KQ+H   +  G L  ++ +   L+  Y +  +P     LF++  + 
Sbjct: 60  LLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQN 119

Query: 70  -RNCFSWNAMIEGF-MKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
            R  F WN +I    +         + +N M ++    +D ++  ++     +D   +  
Sbjct: 120 CRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLK--LCSDSFDICK 177

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G ++H  +   G D D  +G++L+ LYG CG  N                          
Sbjct: 178 GMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLN-------------------------- 211

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL-LLFHKMRRNGVLEDASTLAS 242
                DARR+FD   +   V WN++I     N + TEA    F  + R+ +  +  ++ S
Sbjct: 212 -----DARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVIS 266

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L   ++L   E  +++H ++ KVG+   V   +AL+D Y K G      ++F+E    +
Sbjct: 267 LLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKN 326

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLIS-------------------- 336
            +  N++I   +  GR  DA + FR M      PN   IS                    
Sbjct: 327 EVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHG 386

Query: 337 -------------WNSMIVGLSQNGSPIEALDLFCN-----------------MNKLDLR 366
                         NS+I   +++G   EA  +F N                 +N+L L 
Sbjct: 387 FSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLE 446

Query: 367 MDKF--------------SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
             +F              +  +V+ ACA +  L  G+++ A    IGL SD  +S SL+D
Sbjct: 447 AIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLID 506

Query: 413 FYCKCG--------------------------------YDALALFNEMRNTGVKPTIITF 440
            Y KCG                                  +L LF+EMR  G KP +++F
Sbjct: 507 MYAKCGCLHSARNVFNTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSF 566

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             ++SAC +   +K+G++    +  + H+   +   + ++D + + G ++ A  L  Q+ 
Sbjct: 567 VGVISACANLAALKQGKE-VHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQIL 625

Query: 501 FEADVGMWSSILRG 514
           F+ DV  W++++ G
Sbjct: 626 FK-DVASWNTMILG 638


>gi|125597302|gb|EAZ37082.1| hypothetical protein OsJ_21424 [Oryza sativa Japonica Group]
          Length = 671

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 211/693 (30%), Positives = 315/693 (45%), Gaps = 149/693 (21%)

Query: 6   DYLARLL-QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           D+LA LL +    HH  H  + +H   +K G L ST  + N LL  Y   G+  DA  +F
Sbjct: 3   DHLAALLLRGSGGHHHSH-PRAVHGAAVKLGCLASTY-LCNNLLLSYQARGHLADARGVF 60

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADL 118
           DEMPRRN  SW+ +I    +LG    +L LF  M       + N F+   L++G A+A  
Sbjct: 61  DEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKD 120

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           A    G+Q+H+  +  G+D D  +  +LV++Y K                          
Sbjct: 121 AV--AGEQVHASAVKLGVDEDESVAGTLVDMYAK-------------------------- 152

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE----DTEALLLFHKMRRNGVL 234
                CG++  + R F  T   S + W SMI+  +++ +    DT A++LF KM    V 
Sbjct: 153 -----CGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDT-AIVLFKKMLVLKVW 206

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVG--------------------------- 267
              +T + +L        L  GKQVHG   K+G                           
Sbjct: 207 PTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRL 266

Query: 268 ---VIDDVIVASALLDTYSKRG----------------MPSD---------ACKLFSELK 299
              +  D    ++LL  Y++ G                MP D          C    +L+
Sbjct: 267 ACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLR 326

Query: 300 VY--------------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           V               DT+LLN ++TVY  CG I  ++ +F T+ NK  ISW +++    
Sbjct: 327 VVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYV 386

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           QN    EAL  F  M +  L    F + SV+ AC+  SSL  G Q+ +RV  +G+D D  
Sbjct: 387 QNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTS 446

Query: 406 ISTSLVDFYCKCGYD--ALALFNEMRNTG------------------------------- 432
           +  +LV  Y KCG    AL +FN MRN G                               
Sbjct: 447 VENALVTMYAKCGVVQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEM 506

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           V P   TF  +LS+C   GLV EG ++F  MK +Y+++P++EHY+CMVDLFARAG  ++A
Sbjct: 507 VCPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDA 566

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
           +  I+ MP + D  +W ++L  C  HG+  LGR  A++++E+ PE+   YI LSSI A+ 
Sbjct: 567 MKFIDAMPCQPDQLVWEALLASCRVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHASI 626

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWADGIAFN 585
             W++ +  R ++  + + K  G S  D   F+
Sbjct: 627 DMWDEKARNRTLLDFQQLRKDVGSSQLDSQGFS 659



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 124/246 (50%), Gaps = 19/246 (7%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +++ I  +  +L++C+   S+  G Q+H   +K G+ + T  + N L+ MY +CG    A
Sbjct: 406 LESSIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDT-SVENALVTMYAKCGVVQVA 464

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA 116
           L +F+ M  R   SWNA+I  F + G++  ++QLF++M ++    +D+++  L+S  ++ 
Sbjct: 465 LKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRM 524

Query: 117 DLAA--LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFC 173
            L A   EY KQ+ +      L+      + +V+L+ + G F+ A + ++ M  +PD   
Sbjct: 525 GLVAEGCEYFKQMKTKY---NLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLV 581

Query: 174 LSALIS-----GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI---SNNEDTEALLLF 225
             AL++     G  + G+M   + +  +  D S  +  S I   I           LL F
Sbjct: 582 WEALLASCRVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHASIDMWDEKARNRTLLDF 641

Query: 226 HKMRRN 231
            ++R++
Sbjct: 642 QQLRKD 647


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 178/618 (28%), Positives = 295/618 (47%), Gaps = 109/618 (17%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +   +LQ C     +   +++H H +K G       +   L+ +Y +CG    A  +FDE
Sbjct: 71  FYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAF-LMTFLVNVYAKCGTMETARKVFDE 129

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYG 124
           +PRRN  SW  ++ G++     E ++Q+F  M +   +  N  +     A +DL + E G
Sbjct: 130 LPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELG 189

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQIH + +   ++FD+ +G+SL +LY KC                               
Sbjct: 190 KQIHGYSIKYRIEFDASIGNSLCSLYSKC------------------------------- 218

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G +  A + F R  D + + W ++IS +  N E    L  F +M    V  +  TL S L
Sbjct: 219 GSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSAL 278

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S C  +  L+ G Q+H    K+G   ++ +                              
Sbjct: 279 SLCCVMQSLDIGTQIHSLTIKLGFESNLPIK----------------------------- 309

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG-----------LSQNGSPIEA 353
             N+++ +Y  CG I +AK +F  M   SL++WN+MI G           L+ +    EA
Sbjct: 310 --NSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEA 367

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L +F  +N+  ++ D F+ +SV+S C+++ +LE GEQV A+    G  SD ++ T+LV+ 
Sbjct: 368 LSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNM 427

Query: 414 YCKCG---------------------------------YDALALFNEMRNTGVKPTIITF 440
           Y KCG                                   AL LF +MR  GV+P  ITF
Sbjct: 428 YNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITF 487

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H G+V E   +F  MK +Y I P ++HY+C++D+F R G L+EA + I++M 
Sbjct: 488 VGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMD 547

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E +  +WS ++ GC + G   LG   AE+++ L P++   Y  L +++ ++G+W++ S 
Sbjct: 548 LEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSR 607

Query: 561 IRDIMREKHVGKLPGCSW 578
           +R +M+E+ +G+L   SW
Sbjct: 608 VRKMMKEEKLGRLKDWSW 625



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 37/236 (15%)

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
           R G   +++    +L  C     +   +++H H  K G   D  + + L++ Y+K G   
Sbjct: 62  REGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTME 121

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
            A K+F EL   + +   T++T Y    + E A  +FR M              L     
Sbjct: 122 TARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREM--------------LEAGAY 167

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           P                   ++L + +SA +++ S ELG+Q+        ++ D  I  S
Sbjct: 168 PT-----------------NYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNS 210

Query: 410 LVDFYCKCGYD--ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
           L   Y KCG    A+  F  +R+  V    I++T ++SA    G    G ++F  M
Sbjct: 211 LCSLYSKCGSLECAVKAFRRIRDKNV----ISWTTVISAWGDNGEAATGLQFFVEM 262


>gi|297605857|ref|NP_001057684.2| Os06g0493800 [Oryza sativa Japonica Group]
 gi|255677066|dbj|BAF19598.2| Os06g0493800 [Oryza sativa Japonica Group]
          Length = 721

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 215/707 (30%), Positives = 320/707 (45%), Gaps = 153/707 (21%)

Query: 6   DYLARLL-QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           D+LA LL +    HH  H  + +H   +K G L ST  + N LL  Y   G+  DA  +F
Sbjct: 3   DHLAALLLRGSGGHHHSH-PRAVHGAAVKLGCLASTY-LCNNLLLSYQARGHLADARGVF 60

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADL 118
           DEMPRRN  SW+ +I    +LG    +L LF  M       + N F+   L++G A+A  
Sbjct: 61  DEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKD 120

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           A    G+Q+H+  +  G+D D  +  +LV++Y K                          
Sbjct: 121 AV--AGEQVHASAVKLGVDEDESVAGTLVDMYAK-------------------------- 152

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE----DTEALLLFHKMRRNGVL 234
                CG++  + R F  T   S + W SMI+  +++ +    DT A++LF KM    V 
Sbjct: 153 -----CGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDT-AIVLFKKMLVLKVW 206

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVG--------------------------- 267
              +T + +L        L  GKQVHG   K+G                           
Sbjct: 207 PTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRL 266

Query: 268 ---VIDDVIVASALLDTYSKRG----------------MPSD---------ACKLFSELK 299
              +  D    ++LL  Y++ G                MP D          C    +L+
Sbjct: 267 ACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLR 326

Query: 300 VY--------------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           V               DT+LLN ++TVY  CG I  ++ +F T+ NK  ISW +++    
Sbjct: 327 VVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYV 386

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           QN    EAL  F  M +  L    F + SV+ AC+  SSL  G Q+ +RV  +G+D D  
Sbjct: 387 QNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTS 446

Query: 406 ISTSLVDFYCKCGYD--ALALFNEMRNTG------------------------------- 432
           +  +LV  Y KCG    AL +FN MRN G                               
Sbjct: 447 VENALVTMYAKCGVVQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEM 506

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           V P   TF  +LS+C   GLV EG ++F  MK +Y+++P++EHY+CMVDLFARAG  ++A
Sbjct: 507 VCPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDA 566

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
           +  I+ MP + D  +W ++L  C  HG+  LGR  A++++E+ PE+   YI LSSI A+ 
Sbjct: 567 MKFIDAMPCQPDQLVWEALLASCRVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHASI 626

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANF 599
             W++ +  R ++  + + K  G S  D   F+    D +F  L  F
Sbjct: 627 DMWDEKARNRTLLDFQQLRKDVGSSQLDSQGFS----DDIFNALQPF 669



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 124/246 (50%), Gaps = 19/246 (7%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +++ I  +  +L++C+   S+  G Q+H   +K G+ + T  + N L+ MY +CG    A
Sbjct: 406 LESSIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDT-SVENALVTMYAKCGVVQVA 464

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA 116
           L +F+ M  R   SWNA+I  F + G++  ++QLF++M ++    +D+++  L+S  ++ 
Sbjct: 465 LKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRM 524

Query: 117 DLAA--LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFC 173
            L A   EY KQ+ +      L+      + +V+L+ + G F+ A + ++ M  +PD   
Sbjct: 525 GLVAEGCEYFKQMKTKY---NLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLV 581

Query: 174 LSALIS-----GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI---SNNEDTEALLLF 225
             AL++     G  + G+M   + +  +  D S  +  S I   I           LL F
Sbjct: 582 WEALLASCRVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHASIDMWDEKARNRTLLDF 641

Query: 226 HKMRRN 231
            ++R++
Sbjct: 642 QQLRKD 647


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 177/603 (29%), Positives = 279/603 (46%), Gaps = 98/603 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++C    S+  G+ +H   L++ + N +  I N LL+MY  CG+  D   +FDEM  +
Sbjct: 93  LFEACGKLRSLADGRLIHDR-LRRTVKNPSGSIENCLLRMYCDCGSXIDVQKVFDEMLMK 151

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIH 128
           N  SW  +I  + K G  EK+++LF+ M        + +     ++ L    LE GKQ+H
Sbjct: 152 NLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMH 211

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           SH++   L+ +  + +++ N+Y                                 CG + 
Sbjct: 212 SHVIRAQLNANITVETAICNMY-------------------------------VRCGWLE 240

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            A+ VFD     ++V W  ++ GY    +   AL LF +M   GV  D    + VL  C 
Sbjct: 241 GAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCC 300

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            L   + GKQ+H H  K+G   +V V + L+D Y K                        
Sbjct: 301 XLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVK------------------------ 336

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  CG IE A   F  +   + +SW+++I G SQ+G   + + +F ++    + ++
Sbjct: 337 -------CGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLN 389

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------- 419
            F   SV  ACA  ++L +G Q        GL S     +++V  Y KCG          
Sbjct: 390 SFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFE 449

Query: 420 ------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +AL  F  M++ GV+P  +TF A+L+AC H GLV E
Sbjct: 450 SIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAE 509

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
            +++  +M   Y + P I+HY CM+D ++RAG L EA+ LI +MPFE D   W S+L GC
Sbjct: 510 AKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMPFEPDAMSWKSLLGGC 569

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
            AH D  LG+  AE +  LDP +   YI L ++++  G+WE++  +R +M E+ + K   
Sbjct: 570 WAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVS 629

Query: 576 CSW 578
           CSW
Sbjct: 630 CSW 632



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 198/474 (41%), Gaps = 78/474 (16%)

Query: 124 GKQIHSHILVNGLDFD--SVLGSSLVNLYGKCGDFNS-------ANQVLNMMKEPDDFCL 174
           GK   +H  +  +D    SV   S   L+  CG   S        +++   +K P     
Sbjct: 66  GKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIE 125

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + L+  Y +CG   D ++VFD     + V W  +IS Y  N E  +A+ LF  M+ +G+ 
Sbjct: 126 NCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIR 185

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +++   S+L +C    FLE GKQ+H H  +  +  ++ V +A+ + Y +          
Sbjct: 186 PNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVR---------- 235

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                CG +E AK +F  M  ++ ++W  ++VG +Q      AL
Sbjct: 236 ---------------------CGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVAL 274

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +LF  M    + +D+F  + V+  C  +   ++G+Q+ + +  +G +S+  + T LVDFY
Sbjct: 275 ELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFY 334

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            KCG                                  D + +F  +R+ GV      +T
Sbjct: 335 VKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYT 394

Query: 442 AILSAC-DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           ++  AC     L    Q   DA+K    +   +   S MV ++++ G L+ A    E + 
Sbjct: 395 SVFQACAAQANLNMGSQAHGDAIK--RGLVSYLYGESAMVTMYSKCGRLDYARRAFESID 452

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSG 553
            E D   W++I+ G   HG+         RM       NA  +I + +  + SG
Sbjct: 453 -EPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSG 505



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 37/211 (17%)

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N  +V LS+ G   EA D    M+  D+ +   S   +  AC  + SL  G  +  R+  
Sbjct: 56  NLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRR 115

Query: 398 IGLDSDQIISTSLVDFYCKCG--------YD-------------------------ALAL 424
              +    I   L+  YC CG        +D                         A+ L
Sbjct: 116 TVKNPSGSIENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRL 175

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLF 483
           F++M+ +G++P    + ++L +C     ++ G++     ++ Q + +  +E   C  +++
Sbjct: 176 FSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAIC--NMY 233

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            R G L  A  + + M  +  V  W+ ++ G
Sbjct: 234 VRCGWLEGAKLVFDGMDAQNAV-TWTGLMVG 263


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 175/620 (28%), Positives = 299/620 (48%), Gaps = 86/620 (13%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND- 103
           N ++  Y+      DA  LFD M +R+ +SW  MI  + ++G  EK+ +LFN++P K D 
Sbjct: 81  NSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDT 140

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVN--------------------GLDFDSVLG 143
              N LI+G+AK  L      K++   +LV                     GL F   +G
Sbjct: 141 VCRNALIAGYAKKRL--FREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMG 198

Query: 144 SS-------LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
                    +V+ Y   GD +SA      +  P+      ++SG+A+ G+M +AR +F+ 
Sbjct: 199 ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNE 258

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMR---------------RNGVLEDASTLA 241
               + V WN+MI  Y+  N+  +A  LF +M                R G L  A  + 
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREIL 318

Query: 242 SVL-----SACSSL--GFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACK 293
           +++     +A +++  G+L+ G+    +     + + D +  ++++  Y+  G   +A +
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALR 378

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF E+   D +  NTMI  Y+  G+++ A  +F  M  ++++SWNS+I G  QNG   EA
Sbjct: 379 LFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEA 438

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L+ F  M +   + D+ ++   + A AN+++L +G Q+       G  +D  +  +++  
Sbjct: 439 LNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTM 498

Query: 414 YCK---------------------------------CGYDALALFNEMRNTGVKPTIITF 440
           Y K                                 CG +A+ LF  M   G+ P  +TF
Sbjct: 499 YAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTF 558

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           T +LSAC+H G V +G   F +M   Y I P+ EHY+C+++L  R G L EAV +++ M 
Sbjct: 559 TGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMK 618

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
             +   +W ++L  C  H +  L +  AER++ L+P+NA  Y+ LS++ A +G W+    
Sbjct: 619 TVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVER 678

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +M+E    K PGCSW +
Sbjct: 679 VRVLMKENKAEKQPGCSWIE 698



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 184/370 (49%), Gaps = 11/370 (2%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           H G+      L   +    L   N ++  Y+R     DA  LF EMP ++  SW AMI G
Sbjct: 245 HYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMING 304

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSV 141
           ++++G   ++ ++ N+MP KN  +   +I+G+ ++    ++   +I S I V     DSV
Sbjct: 305 YVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQS--GRMDEANEIFSQISVR----DSV 358

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
             +S++  Y  CG  + A ++   M   D    + +I+ YA  G+M+ A  +F+   + +
Sbjct: 359 CWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERN 418

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            V WNS+I+GY+ N    EAL  F  M++ G   D +T+   L A ++L  L  G Q+H 
Sbjct: 419 VVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHH 478

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
              K G  +D+ V +A+L  Y+K G   +A  +F+E+K  D +  N++I  Y+  G  ++
Sbjct: 479 LTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKE 538

Query: 322 AKHIFRTMPNKSLISWNSMIVGL----SQNGSPIEALDLFCNMNK-LDLRMDKFSLASVI 376
           A  +F  MP + +I       GL    +  G   + L+LF +M +   ++      A VI
Sbjct: 539 AVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVI 598

Query: 377 SACANISSLE 386
           +    +  LE
Sbjct: 599 NLLGRVGRLE 608



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 221/470 (47%), Gaps = 66/470 (14%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G   +A+ +F +M  RN  ++N+MI  + K G    + +LF++MPQ+N  SWN +I+G
Sbjct: 27  RSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAG 86

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD- 171
           +   +L  +E   ++   +       D    + ++  Y + G+   A ++ N++ +  D 
Sbjct: 87  YLHNEL--VEDAARLFDRMFKR----DIYSWTLMITCYTRIGELEKARELFNLLPDKQDT 140

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
            C +ALI+GYA      +A+++FD     + V WNS++SGY  N +    L  F  M   
Sbjct: 141 VCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM--- 197

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
                                   G++            +V+  + ++D Y   G    A
Sbjct: 198 ------------------------GER------------NVVSWNLMVDGYVGVGDLDSA 221

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
              F ++   + +   TM++ ++  GR+ +A+++F  MP K+L+SWN+MI    +     
Sbjct: 222 WMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQID 281

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           +A  LF  M +     D  S  ++I+    +  L    ++   +    + +     T+++
Sbjct: 282 DAYKLFMEMPE----KDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQ----TAMI 333

Query: 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
           + Y + G   +A  +F+++    V+ ++  + ++++   HCG   E  + F  M     +
Sbjct: 334 NGYLQSGRMDEANEIFSQI---SVRDSV-CWNSMITGYAHCGRTDEALRLFQEM-----V 384

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             ++  ++ M+  +A+AG +++A+ +  +M  E +V  W+S++ G V +G
Sbjct: 385 CKDMVSWNTMIAAYAQAGQMDKALEMFNEMQ-ERNVVSWNSLITGYVQNG 433



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 125/269 (46%), Gaps = 33/269 (12%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + VGK L    +   +    +     ++  Y++ G   +A  +F ++  R+   WN+MI 
Sbjct: 306 VRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMIT 365

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGKQIHSHILV----- 133
           G+   G  +++L+LF  M  K+  SWN +I+ +A+A     ALE   ++    +V     
Sbjct: 366 GYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSL 425

Query: 134 ------NGLDFDSVLGSSLVNLYGKCGDFN--------SAN-QVLNMMKE---------- 168
                 NGL F+++    L+   G+  D          SAN   LN+  +          
Sbjct: 426 ITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGF 485

Query: 169 -PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
             D F  +A+++ YA  G++ +A  VF    +   V WNS+I+GY  N    EA+ LF  
Sbjct: 486 GNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEV 545

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHG 256
           M   G++ D  T   +LSAC+  GF++ G
Sbjct: 546 MPLRGIIPDEVTFTGLLSACNHGGFVDQG 574



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 121/250 (48%), Gaps = 19/250 (7%)

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           + G   +A  +F ++   + +  N+MI+ Y+  GRI +A+ +F  MP ++L+SWNSMI G
Sbjct: 27  RSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAG 86

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
              N    +A  LF  M K D+    +S   +I+    I  LE   ++F    ++    D
Sbjct: 87  YLHNELVEDAARLFDRMFKRDI----YSWTLMITCYTRIGELEKARELF---NLLPDKQD 139

Query: 404 QIISTSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
            +   +L+  Y K     +A  LF+EM    +   ++++ +ILS     G ++ G ++F+
Sbjct: 140 TVCRNALIAGYAKKRLFREAKKLFDEM----LVKNVVSWNSILSGYTKNGKMQLGLQFFE 195

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
           AM      +  +  ++ MVD +   G L+ A    +++P   +V  W ++L G   +G  
Sbjct: 196 AMG-----ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP-TPNVVSWVTMLSGFAHYGRM 249

Query: 522 GLGRKVAERM 531
              R +   M
Sbjct: 250 TEARNLFNEM 259


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 181/600 (30%), Positives = 290/600 (48%), Gaps = 105/600 (17%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + +G+Q+H   +K       +P++N L+ MY + G    A   F   P  +  SWN MI 
Sbjct: 910  LDLGEQIHALVIKSSFA-PVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMIS 968

Query: 81   GFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY---GKQIHSHILV 133
             + +   + +++  F  +     + + F+   ++   +  D    EY   G Q+H + + 
Sbjct: 969  SYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEG--EYFTLGSQVHVYAI- 1025

Query: 134  NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
                              KCG  N            D F  +ALI  Y+  GKM++A  +
Sbjct: 1026 ------------------KCGIIN------------DSFVSTALIDLYSKGGKMDEAEFL 1055

Query: 194  FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253
                 D     WN+++ GYI +N+  +AL  F  M   G+  D  TLA+ + A   L  L
Sbjct: 1056 LHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINL 1115

Query: 254  EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
            + GKQ+  +A K+G  +D+ V+S +LD Y K G   +A +LF E+               
Sbjct: 1116 KQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEI--------------- 1160

Query: 314  SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
                          + P++  ++W +MI G  +NG    AL ++  M    ++ D+++ A
Sbjct: 1161 --------------SRPDE--VAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFA 1204

Query: 374  SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------------- 419
            ++I A + +++LE G+Q+ A V  +    D  + TSLVD YCKCG               
Sbjct: 1205 TLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 420  -------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                               +AL LF  M++ G++P  +TF  +LSAC H GL  E  K+F
Sbjct: 1265 KVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYF 1324

Query: 461  DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
            DAM   Y I PEIEHYSC+VD   RAG + EA N+I  MPF+A   M+ ++L  C   GD
Sbjct: 1325 DAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGD 1384

Query: 521  KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
                ++VA++++ LDP ++ AY+ LS+I+A S +W+  +  R++M+ K+V K PG SW D
Sbjct: 1385 AETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWID 1444



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 141/588 (23%), Positives = 264/588 (44%), Gaps = 129/588 (21%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + V + +H + +K G     L ++  L+ +Y + G    A LLFD+MP R+   WN M++
Sbjct: 733  VQVSETVHGYAVKIG-FELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLK 791

Query: 81   GFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKADLA--ALEYGKQIHSHILVNG 135
             +++   ++++L+ F+   +     DFS    + G   +D++     + +Q+ ++ +   
Sbjct: 792  AYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAM-KM 850

Query: 136  LDFDSVLGSSLVNLYGKCGDFNSANQ-------------------------VLNMMKEPD 170
              FD   GS++     K  +F  A Q                         +L+     D
Sbjct: 851  FPFDQ--GSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGAD 908

Query: 171  DFCL--------------------SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
            D  L                    ++L++ Y+  G +  A + F  + +   + WN+MIS
Sbjct: 909  DLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMIS 968

Query: 211  GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH---GKQVHGHACKVG 267
             Y  NN + EA+  F  + R+G+  D  TLASVL ACS+    E+   G QVH +A K G
Sbjct: 969  SYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCG 1028

Query: 268  VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
            +I+D  V++AL+D YSK                                G++++A+ +  
Sbjct: 1029 IINDSFVSTALIDLYSK-------------------------------GGKMDEAEFLLH 1057

Query: 328  TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
               +  L SWN+++ G  ++    +AL+ F  M+++ + +D+ +LA+ I A   + +L+ 
Sbjct: 1058 GKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQ 1117

Query: 388  GEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNE------------------ 427
            G+Q+ A    +G ++D  +S+ ++D Y KCG   +AL LF E                  
Sbjct: 1118 GKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIE 1177

Query: 428  -------------MRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEI 473
                         MR +GV+P   TF  ++ A      +++G++   + +K  Y +D   
Sbjct: 1178 NGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD--- 1234

Query: 474  EHY--SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             H+  + +VD++ + G + +A  +  +M     V  W+++L G   HG
Sbjct: 1235 -HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHG 1280



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 133/596 (22%), Positives = 238/596 (39%), Gaps = 136/596 (22%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + +GK+ H   +  G L     + N L+ MY +CG+   A  +FD+   R+  +WN+++ 
Sbjct: 627  LKLGKRAHARIVTSGDLPDRY-LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 81   GFMKLGHK--EKSLQLFNVMPQKNDFSWNML------------ISGFAKADLAALEYGKQ 126
             + +      E  L+ F +     +F +++             +SGF       ++  + 
Sbjct: 686  AYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGF-------VQVSET 738

Query: 127  IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
            +H + +  G + D  +  +LVN+Y K                                G 
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCK-------------------------------YGL 767

Query: 187  MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            +  AR +FD+  +  +V+WN M+  Y+ N+   EAL  F    R+G   D S L  V+  
Sbjct: 768  VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGG 827

Query: 247  CS---SLGFLEHGKQVHGHACKVGVID---DVIVASALLDTYSKRGMPSDACKLFSELKV 300
             +   S     H +QV  +A K+   D   ++   +  L  +   G    A   F  L  
Sbjct: 828  VNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLR 887

Query: 301  ----YDTILL-----------------------------------NTMITVYSSCGRIED 321
                +D++ L                                   N+++ +YS  G +  
Sbjct: 888  STIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYA 947

Query: 322  AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
            A+  F   P   LISWN+MI   +QN   +EA+  F ++ +  L+ D+F+LASV+ AC+ 
Sbjct: 948  AEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACST 1007

Query: 382  ISSLE---LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------YD------ 420
                E   LG QV       G+ +D  +ST+L+D Y K G            YD      
Sbjct: 1008 GDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASW 1067

Query: 421  ---------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                           AL  F+ M   G+    IT    + A      +K+G K   A   
Sbjct: 1068 NAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQG-KQIQAYAI 1126

Query: 466  QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
            +   + ++   S ++D++ + G +  A+ L  ++    +V  W++++ G + +GD+
Sbjct: 1127 KLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVA-WTTMISGYIENGDE 1181


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 190/625 (30%), Positives = 289/625 (46%), Gaps = 115/625 (18%)

Query: 8   LARLLQSCNTH----HSI---------HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC 54
              L+ SC+TH    H++         H GKQLH H +K G  N  L + N++L +Y++C
Sbjct: 63  FTNLVDSCSTHSFSSHALKISAKLGFLHGGKQLHAHVIKLGNCN-LLSLQNQVLHVYVKC 121

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMI----EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
               D   +FDEMP +N  SWN +I    EG  K          F  M  +      + +
Sbjct: 122 KEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITL 181

Query: 111 SGFAKADLAALEYG--KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 168
           +G  +A +   + G  +Q+H  IL +G D +  +GS                        
Sbjct: 182 NGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGS------------------------ 217

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
                  AL+  YA  G +++A+  FD  +    V+WN M+S Y  N    +A  +F  M
Sbjct: 218 -------ALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLM 270

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
           R  GV  D  T  S++++C  LG    GKQVHG   ++    DV+VASAL+D YSK    
Sbjct: 271 RLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNE-- 328

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                                         IEDA+  F  M  K+++SW +MIVG  Q+G
Sbjct: 329 -----------------------------NIEDARKAFDGMIVKNIVSWTTMIVGYGQHG 359

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              EA+ L   M ++    D+ +LAS++S+C N+S+     QV A V   G ++   I+ 
Sbjct: 360 DGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIAN 419

Query: 409 SLVDFYCKCG---------------------------------YDALALFNEMRNTGVKP 435
           +LV  Y KCG                                  + + +F +M  + V+P
Sbjct: 420 ALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRP 479

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
             + F  +LSAC H G V EG  +F+ M   Y I P+ EHY+C++DL  RAG L+EA+NL
Sbjct: 480 DKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINL 539

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555
           +  MP E       + L  C  H + GL R  +E++  ++P     Y  +S+++A+ G W
Sbjct: 540 LTSMPVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHW 599

Query: 556 EKSSLIRDIMREKHVGKLPGCSWAD 580
              + +R +MRE+   K+PGCSW +
Sbjct: 600 FDVARVRKLMRERCDFKVPGCSWME 624


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 183/604 (30%), Positives = 291/604 (48%), Gaps = 98/604 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+SC     +  G+++H H ++    +  + + N L+ MY++CG+   A +LFD+MP R
Sbjct: 141 VLRSCAGAMDLVRGREVHAHVVRFD-FDMDVDVVNALITMYVKCGDVVSARMLFDKMPTR 199

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAKADLAALE-YGKQIH 128
           +  SWNAMI G+ +     + L+LF  M + + D     + S  +  +L   E  G Q+H
Sbjct: 200 DRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLH 259

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           S+++    D +  + +SL+ +Y   G +  A  V + M+  D                  
Sbjct: 260 SYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRD------------------ 301

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                         V W ++ISG + N    +AL  +  M   G + D  T+ASVLSAC+
Sbjct: 302 -------------VVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACA 348

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           SLG L+ G ++H  A + G I  V+VA++L+D                            
Sbjct: 349 SLGQLDMGMKLHELAERTGHILYVVVANSLID---------------------------- 380

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
              +YS C RIE A  IF  +P+K +ISW S+I GL  N    EAL  F  M  L  + +
Sbjct: 381 ---MYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKM-ILKSKPN 436

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALAL---- 424
             +L S +SACA + +L  G+++ A     G+  D  +  +++D Y +CG    AL    
Sbjct: 437 SVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN 496

Query: 425 ----------------------------FNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                       F  M  + + P  +TF ++L AC   G+V EG
Sbjct: 497 LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEG 556

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            ++F  MK  YHI P ++HY+C+VDL  RAG LNEA   IE+MP + D  +W ++L  C 
Sbjct: 557 LEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACR 616

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H    LG   A+ + + D E+   YI L +++A SG+W++ + +R  M+E+ +   PGC
Sbjct: 617 IHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGC 676

Query: 577 SWAD 580
           SW +
Sbjct: 677 SWVE 680



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 119/511 (23%), Positives = 213/511 (41%), Gaps = 81/511 (15%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  +  ++ +C       +G QLH + ++    +  + + N L+QMY+  G+  +A
Sbjct: 232 IDPDLMTMTSVISACELLGDERLGTQLHSYVVRTA-YDGNISVYNSLIQMYLSVGHWKEA 290

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADL 118
             +F  M  R+  SW  +I G +     +K+L+ +  M         + I+    A A L
Sbjct: 291 ESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASL 350

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L+ G ++H      G     V+ +SL+++Y KC                         
Sbjct: 351 GQLDMGMKLHELAERTGHILYVVVANSLIDMYSKC------------------------- 385

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                  ++  A  +F +  D   + W S+I+G   NN   EAL+ F KM       ++ 
Sbjct: 386 ------KRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKSK-PNSV 438

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL S LSAC+ +G L  GK++H HA K G+  D  + +A+LD Y +              
Sbjct: 439 TLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVR-------------- 484

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            CGR+  A + F  +  K + +WN ++ G +Q G     ++LF 
Sbjct: 485 -----------------CGRMRTALNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFK 526

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M + ++  D  +  S++ AC+    +  G + F R+ +     +  I+ +L  + C   
Sbjct: 527 RMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKV-----NYHITPNLKHYACVVD 581

Query: 419 YDALA-LFNE----MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE- 472
               A   NE    +    +KP    + A+L+AC     V  G+    A +  +  D E 
Sbjct: 582 LLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGEL---AAQHIFKQDAES 638

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           I +Y  + +L+A +G  +E   +   M  E 
Sbjct: 639 IGYYILLCNLYADSGKWDEVAKVRRTMKEEG 669



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 163/406 (40%), Gaps = 97/406 (23%)

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           LG++L++++ + GD  +A  V   M E D F  + L+ GY   G        FD      
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAG-------FFD------ 117

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
                             EAL L+H++   G+  D  T  SVL +C+    L  G++VH 
Sbjct: 118 ------------------EALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHA 159

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
           H  +     DV V +AL+  Y K G    A  LF ++   D                   
Sbjct: 160 HVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDR------------------ 201

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
                        ISWN+MI G  +N   +E L+LF  M +L +  D  ++ SVISAC  
Sbjct: 202 -------------ISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACEL 248

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------------- 419
           +    LG Q+ + V     D +  +  SL+  Y   G+                      
Sbjct: 249 LGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTI 308

Query: 420 -----------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
                       AL  +  M  TG  P  +T  ++LSAC   G +  G K  +  +   H
Sbjct: 309 ISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGH 368

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           I   +   S ++D++++   + +A+ +  Q+P + DV  W+S++ G
Sbjct: 369 ILYVVVANS-LIDMYSKCKRIEKALEIFHQIP-DKDVISWTSVING 412



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 157/351 (44%), Gaps = 42/351 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C +   + +G +LH    + G +   + +AN L+ MY +C     AL +F ++
Sbjct: 340 IASVLSACASLGQLDMGMKLHELAERTGHILYVV-VANSLIDMYSKCKRIEKALEIFHQI 398

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-AKADLAALEYGKQ 126
           P ++  SW ++I G        ++L  F  M  K+  +   LIS   A A + AL  GK+
Sbjct: 399 PDKDVISWTSVINGLRINNRCFEALIFFRKMILKSKPNSVTLISALSACARVGALMCGKE 458

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH+H L  G+ FD  L +++++LY +CG   +A    N + E D    + L++GYA  GK
Sbjct: 459 IHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGK 517

Query: 187 ----MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLA 241
               M   +R+ +   +   V + S++     +   TE L  F +M+ N  +  +    A
Sbjct: 518 GAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYA 577

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK-----LFS 296
            V+      G L    + H    ++ +  D  +  ALL          +AC+     L  
Sbjct: 578 CVVDLLGRAGKL---NEAHEFIERMPIKPDPAIWGALL----------NACRIHRHVLLG 624

Query: 297 ELKV------------YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
           EL              Y  +L N    +Y+  G+ ++   + RTM  + LI
Sbjct: 625 ELAAQHIFKQDAESIGYYILLCN----LYADSGKWDEVAKVRRTMKEEGLI 671


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 188/681 (27%), Positives = 318/681 (46%), Gaps = 143/681 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L+SC+     + G +      K G  +S   + + L+  Y +CG   +A  +F+ M
Sbjct: 119 LSTALRSCSALREFNHGTRFQALVTKSG-FDSNPVLGSALIDFYSKCGCTQEAYRVFEYM 177

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
              +  SW  M+  F++ G   ++LQL++ M Q     N+F++  L+   A +    L Y
Sbjct: 178 NNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLL---AASSFLGLNY 234

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK +H+H+++  ++ + VL ++LV++Y K                               
Sbjct: 235 GKLVHAHLMMWRIELNLVLKTALVDMYCK------------------------------- 263

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C  + DA +V   T +    +W ++ISG+  + +  EA+  FH+M  +GV+ +  T + +
Sbjct: 264 CQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGI 323

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVA---------------------------- 275
           L+ACSS+  L+ GKQ+H      G+ +DV V                             
Sbjct: 324 LNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPN 383

Query: 276 ----SALLDTYSKRGMPSDACKLFSELKVY------------------------------ 301
               ++L+  +S+ G+  ++ K+F  ++                                
Sbjct: 384 VISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHG 443

Query: 302 ---------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
                    D ++ N ++  Y+  G ++DA H+   M ++ +I++ S+   ++Q G+   
Sbjct: 444 YIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEM 503

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL++  +MNK D+RMD FSLAS +SA A I  +E G+Q+       GL S   +S  LVD
Sbjct: 504 ALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVD 563

Query: 413 FYCKCG---------------------------------YDALALFNEMRNTGVKPTIIT 439
            Y KCG                                   AL+ F +MR  GV+P  IT
Sbjct: 564 LYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQIT 623

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
              +L AC H GLV  G  +F +M+ ++ I P+++HY C+VDL  RAG L EA+N+IE M
Sbjct: 624 CLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETM 683

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           PF+ D  ++ ++L  C  HG+  LG  +A + +ELDP +   Y+ L++++  SG  E   
Sbjct: 684 PFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGE 743

Query: 560 LIRDIMREKHVGKLPGCSWAD 580
             R +MRE+ V K PG SW +
Sbjct: 744 KTRRMMRERGVRKNPGQSWME 764



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 226/471 (47%), Gaps = 76/471 (16%)

Query: 1   MDTRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           + ++I+Y  L  ++  CN+  S+  G  +H   +K G     + ++N LL +Y +C    
Sbjct: 10  IPSKIEYSLLKDIVSFCNSR-SVRDGICIHSPIIKMG-FQEDMFLSNNLLSLYGKCFGVA 67

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL 118
           +A  LFDEMP R+  SW  ++  + K+G+ E++L+LF+ M    ++     +S   ++  
Sbjct: 68  EARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCS 127

Query: 119 AALEY--GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           A  E+  G +  + +  +G D + VLGS+L++ Y KCG                      
Sbjct: 128 ALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCG---------------------- 165

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
                  C +  +A RVF+   +   V W  M+S ++     ++AL L+H+M + GV  +
Sbjct: 166 -------CTQ--EAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPN 216

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             T   +L+A S LG L +GK VH H     +  ++++ +AL+D Y K            
Sbjct: 217 EFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIELNLVLKTALVDMYCK------------ 263

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                              C  IEDA  + +      +  W ++I G +Q+    EA+  
Sbjct: 264 -------------------CQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITA 304

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    +  + F+ + +++AC++I +L+LG+Q+ +RV + GL++D  +  SLVD Y K
Sbjct: 305 FHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMK 364

Query: 417 CG---YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
           C     DA+  F  +      P +I++T++++     GL +E  K F AM+
Sbjct: 365 CSNMIEDAVRAFRGI----ASPNVISWTSLIAGFSEHGLEEESIKVFGAMQ 411



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 169/392 (43%), Gaps = 68/392 (17%)

Query: 162 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221
           ++ M  + D F  + L+S Y  C  + +AR++FD         W  ++S Y       EA
Sbjct: 41  IIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEA 100

Query: 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281
           L LF  M  +G   +  TL++ L +CS+L    HG +      K G   + ++ SAL+D 
Sbjct: 101 LELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDF 160

Query: 282 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
           YSK                               CG  ++A  +F  M N  ++SW  M+
Sbjct: 161 YSK-------------------------------CGCTQEAYRVFEYMNNGDIVSWTMMV 189

Query: 342 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 401
               + GS  +AL L+  M +  +  ++F+   +++A + +  L  G+ V A + +  ++
Sbjct: 190 SSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFL-GLNYGKLVHAHLMMWRIE 248

Query: 402 SDQIISTSLVDFYCKCG--------------YD-------------------ALALFNEM 428
            + ++ T+LVD YCKC               YD                   A+  F+EM
Sbjct: 249 LNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEM 308

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR-AG 487
             +GV P   T++ IL+AC     +  G++   +      ++ ++   + +VD++ + + 
Sbjct: 309 ETSGVVPNNFTYSGILNACSSILALDLGKQ-IHSRVVMAGLENDVSVGNSLVDMYMKCSN 367

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            + +AV     +    +V  W+S++ G   HG
Sbjct: 368 MIEDAVRAFRGIA-SPNVISWTSLIAGFSEHG 398



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 15/187 (8%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R+D   LA  L +      +  GKQLH + +K G L S + ++N L+ +Y +CG   D
Sbjct: 515 DVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSG-LGSWISVSNGLVDLYGKCGCIHD 573

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK 115
           A   F E+   +  SWN +I G    GH   +L  F  M     + +  +  +++   + 
Sbjct: 574 AHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSH 633

Query: 116 ADLA--ALEYGKQIHS-HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDD 171
             L    L+Y + +   H +   LD        LV+L G+ G    A  V+  M  +PD 
Sbjct: 634 GGLVDMGLDYFQSMREKHGIRPQLDHYVC----LVDLLGRAGRLEEAMNVIETMPFKPDA 689

Query: 172 FCLSALI 178
                L+
Sbjct: 690 LIYKTLL 696


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 195/684 (28%), Positives = 313/684 (45%), Gaps = 160/684 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+ C+    I  G ++H    K G  ++ + + N LL +Y  CG   DA  LFDEMP R
Sbjct: 16  VLKLCSDSFDICKGMEVHGVVFKLG-FDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPER 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL--------- 121
           +  SWN +I G + +          +    +N + W M++    K +L ++         
Sbjct: 75  DVVSWNTII-GLLSVNG--------DYTEARNYYFW-MILRSVIKPNLVSVISLLPISAA 124

Query: 122 ----EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
               E  ++IH + +  GLD      ++LV+ YGKCG   +  QV N   E ++   +++
Sbjct: 125 LEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSI 184

Query: 178 ISGYANCGKMNDARRVFDRT---------------------------------------T 198
           I+G A  G+  DA   F                                          T
Sbjct: 185 INGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGT 244

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKM-RRN-------------------------- 231
           +T   + NS+I  Y  +   TEA  +FH + RRN                          
Sbjct: 245 ETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQ 304

Query: 232 ----GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
               G   +A T  +VL AC+ LGFL  GK++H    ++G+  D+ V+++L+D Y+K   
Sbjct: 305 MQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAK--- 361

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
                                       CG +  A+++F T   K  +S+N +I+G S+ 
Sbjct: 362 ----------------------------CGCLHSARNVFNT-SRKDEVSYNILIIGYSET 392

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
              +++L+LF  M  L  + D  S   VISACAN+++L+ G++V        L S   +S
Sbjct: 393 DDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVS 452

Query: 408 TSLVDFYCKCGY---------------------------------DALALFNEMRNTGVK 434
            SL+DFY KCG                                   A+++F  MR+  V+
Sbjct: 453 NSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQ 512

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
             ++++ A+LSAC H GLV+ G ++F  M  Q  ++P   HY+CMVDL  RAG + EA  
Sbjct: 513 YDLVSYIAVLSACSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAK 571

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
           LI+Q+P   D  +W ++L  C  +G+  LGR+ AE + EL P++   YI LS+I+A +G 
Sbjct: 572 LIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGR 631

Query: 555 WEKSSLIRDIMREKHVGKLPGCSW 578
           W++++ IR++M+ +   K PGCSW
Sbjct: 632 WDEANKIRELMKSRGAKKNPGCSW 655



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 118/305 (38%), Gaps = 64/305 (20%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M R GV  D  T   VL  CS    +  G +VHG   K+G   DV V + LL  Y   G 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
            +DA +LF E+   D +  NT+I + S  G   +A++ +  M  +S+I  N +       
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLV------- 113

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
                                  S+ S++   A +   E+  ++      +GLDS     
Sbjct: 114 -----------------------SVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTC 150

Query: 408 TSLVDFYCKCG---------------------------------YDALALFNEMRNTGVK 434
            +LVD Y KCG                                 +DAL  F  M + G +
Sbjct: 151 NALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQ 210

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P  +T ++IL         K G++       +   + +I   + ++D++A++G   EA  
Sbjct: 211 PNSVTISSILPVLVELECFKAGKE-IHGFSMRMGTETDIFIANSLIDMYAKSGHSTEAST 269

Query: 495 LIEQM 499
           +   +
Sbjct: 270 IFHNL 274


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 175/620 (28%), Positives = 299/620 (48%), Gaps = 86/620 (13%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND- 103
           N ++  Y+      DA  LFD M +R+ +SW  MI  + ++G  EK+ +LFN++P K D 
Sbjct: 81  NSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDT 140

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVN--------------------GLDFDSVLG 143
              N LI+G+AK  L      K++   +LV                     GL F   +G
Sbjct: 141 VCRNALIAGYAKKRL--FREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMG 198

Query: 144 SS-------LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
                    +V+ Y   GD +SA      +  P+      ++SG+A+ G+M +AR +F+ 
Sbjct: 199 ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNE 258

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMR---------------RNGVLEDASTLA 241
               + V WN+MI  Y+  N+  +A  LF +M                R G L  A  + 
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREIL 318

Query: 242 SVL-----SACSSL--GFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACK 293
           +++     +A +++  G+L+ G+    +     + + D +  ++++  Y+  G   +A +
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALR 378

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF E+   D +  NTMI  Y+  G+++ A  +F  M  ++++SWNS+I G  QNG   EA
Sbjct: 379 LFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEA 438

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L+ F  M +   + D+ ++   + A AN+++L +G Q+       G  +D  +  +++  
Sbjct: 439 LNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTM 498

Query: 414 YCK---------------------------------CGYDALALFNEMRNTGVKPTIITF 440
           Y K                                 CG +A+ LF  M   G+ P  +TF
Sbjct: 499 YAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTF 558

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           T +LSAC+H G V +G   F +M   Y I P+ EHY+C+++L  R G L EAV +++ M 
Sbjct: 559 TGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMK 618

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
             +   +W ++L  C  H +  L +  AER++ L+P+NA  Y+ LS++ A +G W+    
Sbjct: 619 TVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVER 678

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +M+E    K PGCSW +
Sbjct: 679 VRVLMKENKAEKQPGCSWIE 698



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 184/370 (49%), Gaps = 11/370 (2%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           H G+      L   +    L   N ++  Y+R     DA  LF EMP ++  SW AMI G
Sbjct: 245 HYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMING 304

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSV 141
           ++++G   ++ ++ N+MP KN  +   +I+G+ ++    ++   +I S I V     DSV
Sbjct: 305 YVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQS--GRMDEANEIFSQISVR----DSV 358

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
             +S++  Y  CG  + A ++   M   D    + +I+ YA  G+M+ A  +F+   + +
Sbjct: 359 CWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERN 418

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            V WNS+I+GY+ N    EAL  F  M++ G   D +T+   L A ++L  L  G Q+H 
Sbjct: 419 VVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHH 478

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
              K G  +D+ V +A+L  Y+K G   +A  +F+E+K  D +  N++I  Y+  G  ++
Sbjct: 479 LTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKE 538

Query: 322 AKHIFRTMPNKSLISWNSMIVGL----SQNGSPIEALDLFCNMNK-LDLRMDKFSLASVI 376
           A  +F  MP + +I       GL    +  G   + L+LF +M +   ++      A VI
Sbjct: 539 AVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVI 598

Query: 377 SACANISSLE 386
           +    +  LE
Sbjct: 599 NLLGRVGRLE 608



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 221/470 (47%), Gaps = 66/470 (14%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G   +A+ +F +M  RN  ++N+MI  + K G    + +LF++MPQ+N  SWN +I+G
Sbjct: 27  RSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAG 86

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD- 171
           +   +L  +E   ++   +       D    + ++  Y + G+   A ++ N++ +  D 
Sbjct: 87  YLHNEL--VEDAARLFDRMFKR----DIYSWTLMITCYTRIGELEKARELFNLLPDKQDT 140

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
            C +ALI+GYA      +A+++FD     + V WNS++SGY  N +    L  F  M   
Sbjct: 141 VCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM--- 197

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
                                   G++            +V+  + ++D Y   G    A
Sbjct: 198 ------------------------GER------------NVVSWNLMVDGYVGVGDLDSA 221

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
              F ++   + +   TM++ ++  GR+ +A+++F  MP K+L+SWN+MI    +     
Sbjct: 222 WMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQID 281

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           +A  LF  M +     D  S  ++I+    +  L    ++   +    + +     T+++
Sbjct: 282 DAYKLFMEMPE----KDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQ----TAMI 333

Query: 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
           + Y + G   +A  +F+++    V+ ++  + ++++   HCG   E  + F  M     +
Sbjct: 334 NGYLQSGRMDEANEIFSQI---SVRDSV-CWNSMITGYAHCGRTDEALRLFQEM-----V 384

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             ++  ++ M+  +A+AG +++A+ +  +M  E +V  W+S++ G V +G
Sbjct: 385 CKDMVSWNTMIAAYAQAGQMDKALEMFNEMQ-ERNVVSWNSLITGYVQNG 433



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 124/269 (46%), Gaps = 33/269 (12%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + VGK L    +   +    +     ++  Y++ G   +A  +F ++  R+   WN+MI 
Sbjct: 306 VRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMIT 365

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGKQIHSHILV----- 133
           G+   G  +++L+LF  M  K+  SWN +I+ +A+A     ALE   ++    +V     
Sbjct: 366 GYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSL 425

Query: 134 ------NGLDFDSVLGSSLVNLYGKCGDFN--------SAN-QVLNMMKE---------- 168
                 NGL F+++    L+   G+  D          SAN   LN+  +          
Sbjct: 426 ITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGF 485

Query: 169 -PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
             D F  +A+++ YA  G++ +A  VF        V WNS+I+GY  N    EA+ LF  
Sbjct: 486 GNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEV 545

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHG 256
           M   G++ D  T   +LSAC+  GF++ G
Sbjct: 546 MPLRGIIPDEVTFTGLLSACNHGGFVDQG 574



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 121/250 (48%), Gaps = 19/250 (7%)

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           + G   +A  +F ++   + +  N+MI+ Y+  GRI +A+ +F  MP ++L+SWNSMI G
Sbjct: 27  RSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAG 86

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
              N    +A  LF  M K D+    +S   +I+    I  LE   ++F    ++    D
Sbjct: 87  YLHNELVEDAARLFDRMFKRDI----YSWTLMITCYTRIGELEKARELF---NLLPDKQD 139

Query: 404 QIISTSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
            +   +L+  Y K     +A  LF+EM    +   ++++ +ILS     G ++ G ++F+
Sbjct: 140 TVCRNALIAGYAKKRLFREAKKLFDEM----LVKNVVSWNSILSGYTKNGKMQLGLQFFE 195

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
           AM      +  +  ++ MVD +   G L+ A    +++P   +V  W ++L G   +G  
Sbjct: 196 AMG-----ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP-TPNVVSWVTMLSGFAHYGRM 249

Query: 522 GLGRKVAERM 531
              R +   M
Sbjct: 250 TEARNLFNEM 259


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 193/625 (30%), Positives = 281/625 (44%), Gaps = 114/625 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R   +A LL++     S+  G QLH    K G  + T+ + N L+ MY +CG    A  +
Sbjct: 216 RRKMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTM-LGNNLIDMYAKCGELDMAGEV 274

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-MLISGFAKA-----D 117
           F  M  RN  SW A++ GF++ G     L+L   M   ++ + N   +S   KA     D
Sbjct: 275 FGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTED 334

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           + A   G  IH   +  G +   V+ SSLV LY K G                       
Sbjct: 335 MGA---GVGIHGLCVRTGYEEHYVVASSLVLLYSKGG----------------------- 368

Query: 178 ISGYANCGKMNDARRVFD-RTTDTSSVMWNSMISGYISNNEDTEALLLFHKM------RR 230
                   ++ DARRVFD          WN+MISGY       +ALL+F +M        
Sbjct: 369 --------RIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHE 420

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG--VIDDVIVASALLDTYSKRGMP 288
           +    D  T AS+L AC  LG    G QVH      G     + I+A AL+D Y K    
Sbjct: 421 DQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVK---- 476

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                                      CGR+  A  +F  +  K+ I W +++VG +Q G
Sbjct: 477 ---------------------------CGRLPVAMQVFERLERKNAIQWTTVVVGHAQEG 509

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
             +EAL+LF    +   R D   L+S++   A+ + +E G QV          +D     
Sbjct: 510 QVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGN 569

Query: 409 SLVDFYCKCG---------------------------------YDALALFNEMRNTGVKP 435
           S+VD Y KCG                                  +A+A+F EMR  GV+P
Sbjct: 570 SIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEP 629

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
             +T+ A+LSAC H GLV E +++F  ++    + P+ EHY+CMVDL  RAG L EA +L
Sbjct: 630 DEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDL 689

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555
           I  MP E  VG+W ++L  C  H D  +GR+  + ++ +D +N   Y+ LS++FA +G W
Sbjct: 690 IRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAEAGAW 749

Query: 556 EKSSLIRDIMREKHVGKLPGCSWAD 580
            +   +RD MR + + K  GCSW +
Sbjct: 750 RECHKVRDAMRRRGLKKQGGCSWVE 774


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 211/714 (29%), Positives = 323/714 (45%), Gaps = 138/714 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C     +  G+ +H     +G+ + ++  +  L  MY +C  P DA  +FD M   
Sbjct: 22  LLKLCAARADLATGRAVHAQLEARGLASESIA-STALANMYFKCRRPADARRVFDRM--- 77

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
                                       P ++  +WN +++G+A+  L +      +   
Sbjct: 78  ----------------------------PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQ 109

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-----------SALIS 179
               G   DSV   +LV++   C D     + L+  +E   F L           +A++ 
Sbjct: 110 GEEGGERPDSV---TLVSVLPACAD----ARALHACREVHAFALRAGLDELVNVSTAVLD 162

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDAS 238
            Y  CG +  AR VFD     +SV WN+MI GY  N   TEA+ LF +M + GV + DAS
Sbjct: 163 AYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDAS 222

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
            LA+ L AC  LG+L+  ++VH    +VG+  +V V +AL                    
Sbjct: 223 VLAA-LQACGELGYLDEVRRVHELLVRVGLSSNVSVTNAL-------------------- 261

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLF 357
                      IT Y+ C R + A  +F  + NK + ISWN+MI+G +QN  P +A  LF
Sbjct: 262 -----------ITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLF 310

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M   ++R D F+L SVI A A+IS       +        LD D  + T+L+D Y KC
Sbjct: 311 ARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKC 370

Query: 418 G--------YD-------------------------ALALFNEMRNTGVKPTIITFTAIL 444
           G        +D                         A+ LF EM+ TG  P   TF ++L
Sbjct: 371 GRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVL 430

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           +AC H GLV EGQK+F +MK  Y ++P +EHY  MVDL  RAG L+EA + I+ MP E  
Sbjct: 431 AACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPG 490

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
           + ++ ++L  C  H +  L  + A+ + EL PE    ++ L++I+A +  W+  + +R  
Sbjct: 491 ISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTA 550

Query: 565 MREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQHQSADFCDYIHGFD-QARLP 623
           M +K + K PG S                +QL N  E+    S    ++ H  D  ARL 
Sbjct: 551 MEKKGLQKTPGWS---------------IIQLKN--EVHTFYSGS-TNHQHAKDIYARLA 592

Query: 624 LSSKRSFVLGYLLSTLSLKVVYSNLCSSLVVPTRNEL--AYLLIRMVYGNILTI 675
              +    +GY+  T S+  V  ++ + L+     +L  AY LIR   G  + I
Sbjct: 593 KLIEEIKDMGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQI 646



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 74/324 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    ++H  +++H   L+ G L+  + ++  +L  Y +CG    A  +FD M
Sbjct: 122 LVSVLPACADARALHACREVHAFALRAG-LDELVNVSTAVLDAYCKCGAVEAARAVFDCM 180

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYGK 125
           P RN  SWNAMI+G+   G+  +++ LF  M Q+  D +   +++   A  +L  L+  +
Sbjct: 181 PVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVR 240

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK------------------ 167
           ++H  ++  GL  +  + ++L+  Y KC   + A QV N +                   
Sbjct: 241 RVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQN 300

Query: 168 ------------------EPDDFCLSALISGYAN-------------------------- 183
                              PD F L ++I   A+                          
Sbjct: 301 ECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVL 360

Query: 184 ---------CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
                    CG+++ ARR+FD   D   + WN+MI GY S+     A+ LF +M+  G L
Sbjct: 361 TALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSL 420

Query: 235 EDASTLASVLSACSSLGFLEHGKQ 258
            + +T  SVL+ACS  G ++ G++
Sbjct: 421 PNETTFLSVLAACSHAGLVDEGQK 444



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 103/255 (40%), Gaps = 66/255 (25%)

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T  ++L  C++   L  G+ VH      G+  + I ++AL + Y K   P+DA ++F   
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDR- 76

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                                         MP++  ++WN+++ G ++NG P  A++   
Sbjct: 77  ------------------------------MPSRDRVAWNAVVAGYARNGLPSSAMEAVV 106

Query: 359 NMNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
            M   +   R D  +L SV+ ACA+  +L    +V A     GLD    +ST+++D YCK
Sbjct: 107 RMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCK 166

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                  +A+ALF  M   GV  T  +  A 
Sbjct: 167 CGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAA 226

Query: 444 LSACDHCGLVKEGQK 458
           L AC   G + E ++
Sbjct: 227 LQACGELGYLDEVRR 241


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 181/600 (30%), Positives = 290/600 (48%), Gaps = 105/600 (17%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + +G+Q+H   +K       +P++N L+ MY + G    A   F   P  +  SWN MI 
Sbjct: 910  LDLGEQIHALVIKSSFA-PVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMIS 968

Query: 81   GFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY---GKQIHSHILV 133
             + +   + +++  F  +     + + F+   ++   +  D    EY   G Q+H + + 
Sbjct: 969  SYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEG--EYFTLGSQVHVYAI- 1025

Query: 134  NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
                              KCG  N            D F  +ALI  Y+  GKM++A  +
Sbjct: 1026 ------------------KCGIIN------------DSFVSTALIDLYSKGGKMDEAEFL 1055

Query: 194  FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253
                 D     WN+++ GYI +N+  +AL  F  M   G+  D  TLA+ + A   L  L
Sbjct: 1056 LHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINL 1115

Query: 254  EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
            + GKQ+  +A K+G  +D+ V+S +LD Y K G   +A +LF E+               
Sbjct: 1116 KQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEI--------------- 1160

Query: 314  SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
                          + P++  ++W +MI G  +NG    AL ++  M    ++ D+++ A
Sbjct: 1161 --------------SRPDE--VAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFA 1204

Query: 374  SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------------- 419
            ++I A + +++LE G+Q+ A V  +    D  + TSLVD YCKCG               
Sbjct: 1205 TLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 420  -------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                               +AL LF  M++ G++P  +TF  +LSAC H GL  E  K+F
Sbjct: 1265 KVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYF 1324

Query: 461  DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
            DAM   Y I PEIEHYSC+VD   RAG + EA N+I  MPF+A   M+ ++L  C   GD
Sbjct: 1325 DAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGD 1384

Query: 521  KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
                ++VA++++ LDP ++ AY+ LS+I+A S +W+  +  R++M+ K+V K PG SW D
Sbjct: 1385 AETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWID 1444



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 141/588 (23%), Positives = 264/588 (44%), Gaps = 129/588 (21%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + V + +H + +K G     L ++  L+ +Y + G    A LLFD+MP R+   WN M++
Sbjct: 733  VQVSETVHGYAVKIG-FELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLK 791

Query: 81   GFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKADLA--ALEYGKQIHSHILVNG 135
             +++   ++++L+ F+   +     DFS    + G   +D++     + +Q+ ++ +   
Sbjct: 792  AYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAM-KM 850

Query: 136  LDFDSVLGSSLVNLYGKCGDFNSANQ-------------------------VLNMMKEPD 170
              FD   GS++     K  +F  A Q                         +L+     D
Sbjct: 851  FPFDQ--GSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGAD 908

Query: 171  DFCL--------------------SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
            D  L                    ++L++ Y+  G +  A + F  + +   + WN+MIS
Sbjct: 909  DLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMIS 968

Query: 211  GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH---GKQVHGHACKVG 267
             Y  NN + EA+  F  + R+G+  D  TLASVL ACS+    E+   G QVH +A K G
Sbjct: 969  SYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCG 1028

Query: 268  VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
            +I+D  V++AL+D YSK                                G++++A+ +  
Sbjct: 1029 IINDSFVSTALIDLYSK-------------------------------GGKMDEAEFLLH 1057

Query: 328  TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
               +  L SWN+++ G  ++    +AL+ F  M+++ + +D+ +LA+ I A   + +L+ 
Sbjct: 1058 GKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQ 1117

Query: 388  GEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNE------------------ 427
            G+Q+ A    +G ++D  +S+ ++D Y KCG   +AL LF E                  
Sbjct: 1118 GKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIE 1177

Query: 428  -------------MRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEI 473
                         MR +GV+P   TF  ++ A      +++G++   + +K  Y +D   
Sbjct: 1178 NGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD--- 1234

Query: 474  EHY--SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             H+  + +VD++ + G + +A  +  +M     V  W+++L G   HG
Sbjct: 1235 -HFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHG 1280



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 133/596 (22%), Positives = 238/596 (39%), Gaps = 136/596 (22%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + +GK+ H   +  G L     + N L+ MY +CG+   A  +FD+   R+  +WN+++ 
Sbjct: 627  LKLGKRAHARIVTSGDLPDRY-LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 81   GFMKLGHK--EKSLQLFNVMPQKNDFSWNML------------ISGFAKADLAALEYGKQ 126
             + +      E  L+ F +     +F +++             +SGF       ++  + 
Sbjct: 686  AYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGF-------VQVSET 738

Query: 127  IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
            +H + +  G + D  +  +LVN+Y K                                G 
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCK-------------------------------YGL 767

Query: 187  MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            +  AR +FD+  +  +V+WN M+  Y+ N+   EAL  F    R+G   D S L  V+  
Sbjct: 768  VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGG 827

Query: 247  CS---SLGFLEHGKQVHGHACKVGVID---DVIVASALLDTYSKRGMPSDACKLFSELKV 300
             +   S     H +QV  +A K+   D   ++   +  L  +   G    A   F  L  
Sbjct: 828  VNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLR 887

Query: 301  ----YDTILL-----------------------------------NTMITVYSSCGRIED 321
                +D++ L                                   N+++ +YS  G +  
Sbjct: 888  STIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYA 947

Query: 322  AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
            A+  F   P   LISWN+MI   +QN   +EA+  F ++ +  L+ D+F+LASV+ AC+ 
Sbjct: 948  AEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACST 1007

Query: 382  ISSLE---LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------YD------ 420
                E   LG QV       G+ +D  +ST+L+D Y K G            YD      
Sbjct: 1008 GDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASW 1067

Query: 421  ---------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                           AL  F+ M   G+    IT    + A      +K+G K   A   
Sbjct: 1068 NAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQG-KQIQAYAI 1126

Query: 466  QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
            +   + ++   S ++D++ + G +  A+ L  ++    +V  W++++ G + +GD+
Sbjct: 1127 KLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVA-WTTMISGYIENGDE 1181


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 191/661 (28%), Positives = 301/661 (45%), Gaps = 122/661 (18%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEM 67
           AR LQ C        G+ +H H +++G +    L  AN LL MY + G    A  LFD M
Sbjct: 63  ARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRM 122

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P RN  S+  +++   + G  E +  LF  +     + N F    ++      D A L  
Sbjct: 123 PERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF-------CLS- 175
           G  +HS     G D ++ +GS L++ Y  C   + A  V N +   D         C S 
Sbjct: 183 G--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSE 240

Query: 176 -------------------------------------------ALISGYANCGKMNDARR 192
                                                      AL+  YA CG + DAR 
Sbjct: 241 NDCPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARL 300

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
            F+       ++ + MIS Y  +N++ +A  LF ++ R+ VL +  +L+SVL AC+++  
Sbjct: 301 AFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ 360

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L+ GKQ+H HA K+G   D+ V +AL+D Y+K      + K+FS L+  + +  NT++  
Sbjct: 361 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIV-- 418

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
                                        VG SQ+G   EAL +FC M    +   + + 
Sbjct: 419 -----------------------------VGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 449

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------- 419
           +SV+ ACA+ +S+    Q+   +     ++D +I  SL+D Y KCGY             
Sbjct: 450 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLME 509

Query: 420 --------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                               DAL LF+ M  + V+   ITF A+LS C   GLV  G   
Sbjct: 510 RDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSL 569

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           FD+M+  + I P +EHY+C+V L  RAG LN+A+  I  +P      +W ++L  C+ H 
Sbjct: 570 FDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHK 629

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579
           +  LGR  AE+++E++P++   Y+ LS+++A +G  ++ +L+R  MR   V K+PG SW 
Sbjct: 630 NVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWV 689

Query: 580 D 580
           +
Sbjct: 690 E 690



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +LQ+C     +  GKQ+H H +K G   S L + N L+  Y +C +   +L +F  +
Sbjct: 348 LSSVLQACTNMVQLDFGKQIHNHAIKIG-HESDLFVGNALMDFYAKCNDMDSSLKIFSSL 406

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGK 125
              N  SWN ++ GF + G  E++L +F  M         +  S    A A  A++ +  
Sbjct: 407 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG 466

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH  I  +  + D+V+G+SL++ Y KCG    A +V   + E D    +A+ISGYA  G
Sbjct: 467 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 526

Query: 186 KMNDARRVFDR----TTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           +  DA  +FDR      +++ + + +++S   S       L LF  MR
Sbjct: 527 QAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMR 574



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T++ Y + +L++C +  SI    Q+H   ++K   N+   I N L+  Y +CG   DAL 
Sbjct: 445 TQVTY-SSVLRACASTASIRHAGQIHCS-IEKSTFNNDTVIGNSLIDTYAKCGYIRDALK 502

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADL 118
           +F  +  R+  SWNA+I G+   G    +L+LF+ M     + ND ++  L+S      L
Sbjct: 503 VFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGL 562

Query: 119 AALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSA 176
             + +G  +   + ++ G+       + +V L G+ G  N A Q + ++   P      A
Sbjct: 563 --VNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRA 620

Query: 177 LIS 179
           L+S
Sbjct: 621 LLS 623


>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
          Length = 824

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 188/645 (29%), Positives = 309/645 (47%), Gaps = 113/645 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 173 KACGALQWSRFGRGVHGYVAKAG-LHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 231

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++L + M ++      + +S    A A++  +E GKQ H+ 
Sbjct: 232 VAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASANMRGIEEGKQSHAI 291

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNGL+ D++LG+S++N Y K G                                ++ A
Sbjct: 292 AIVNGLELDNILGTSILNFYCKVG-------------------------------LIDYA 320

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
             +FDR  +   V WN +ISGY+       A+ +   MR   +  D  TL++++SA +  
Sbjct: 321 EMIFDRMIEKDVVTWNLLISGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAART 380

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK+V  +  +     D+++AS  +D Y+K G   DA K+F      D IL NT++
Sbjct: 381 QNLKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLL 440

Query: 311 TVYSSCG-----------------------------------RIEDAKHIF------RTM 329
             Y+  G                                   ++ +AK +F       T 
Sbjct: 441 AAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGTF 500

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  +ISW +M+ GL QNG   EA+     M +  +R + FS+   +SAC N++SL  G 
Sbjct: 501 PN--MISWTTMMNGLVQNGCSEEAILFLRKMQESGMRPNVFSITVALSACVNLASLHFGR 558

Query: 390 QVFARVTIIGLDSDQI-ISTSLVDFYCKCG-------------YDALALFNEM------- 428
            +   +      S    I TSLVD Y KCG             Y  L L+N M       
Sbjct: 559 SIHGYIIRNQQHSSSASIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALY 618

Query: 429 --------------RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                          + G+KP  IT T +LSAC+H G + +  + F  M  ++ + P +E
Sbjct: 619 GNVKEAVALYRSLEEDVGIKPDNITITNVLSACNHAGDINQAIEIFTDMVSKHGMKPCLE 678

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG-LGRKVAERMIE 533
           HY  MVDL A AG   +A++LIE+MP++ D  M  S++  C     K  L   ++ +++E
Sbjct: 679 HYGLMVDLLASAGETEKALSLIEEMPYKPDARMIQSLVASCKKQQHKSELMDYLSSQLLE 738

Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            +PEN+  Y+++S+ +A  G W++   +R++M+ K + K PGCSW
Sbjct: 739 SEPENSGNYVRVSNAYAVEGSWDEVVKMREMMKVKGLKKKPGCSW 783



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/523 (26%), Positives = 241/523 (46%), Gaps = 77/523 (14%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           +    +LQ C     +  G+Q+H   LK G        I  +L+  Y +C     A +LF
Sbjct: 63  EIFGEILQGCVYXRDLRTGQQIHARILKNGDFYARNEYIETKLVIFYAKCDALEVAEVLF 122

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALE 122
            ++  RN FSW A+I    ++G  E +L  F  M +   F  N ++    KA   L    
Sbjct: 123 SKLRVRNVFSWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSR 182

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           +G+ +H ++   GL     + SSL ++YGK                              
Sbjct: 183 FGRGVHGYVAKAGLHDCVFVASSLADMYGK------------------------------ 212

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            CG ++DAR+VFD   + + V WN+++ GY+ N  + EA+ L   MR+ GV     T+++
Sbjct: 213 -CGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVST 271

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
            LSA +++  +E GKQ H  A   G+  D I+ +++L+ Y K G+               
Sbjct: 272 CLSASANMRGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGL--------------- 316

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                           I+ A+ IF  M  K +++WN +I G    G  +E     C + +
Sbjct: 317 ----------------IDYAEMIFDRMIEKDVVTWNLLISGYVHQG-LVENAIYMCQLMR 359

Query: 363 LD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--Y 419
           L+ L+ D  +L++++SA A   +L+LG++V         +SD +++++ VD Y KCG   
Sbjct: 360 LENLKFDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSVV 419

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
           DA  +F    ++ V+  +I +  +L+A    GL  E  + F  M+ +  + P +  ++ +
Sbjct: 420 DAKKVF----DSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLE-SVPPNVITWNLI 474

Query: 480 VDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHG 519
           +    R G +NEA  +  QM       ++  W++++ G V +G
Sbjct: 475 ILSLLRNGQVNEAKEMFLQMQSSGTFPNMISWTTMMNGLVQNG 517



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 138/357 (38%), Gaps = 64/357 (17%)

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           +  + SS  +   +S    N E  EAL L  +M    +         +L  C     L  
Sbjct: 21  QARNPSSTSYFHRVSSLCKNGEIREALSLVTEMDFRNLRIGPEIFGEILQGCVYXRDLRT 80

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G+Q+H    K G            D Y++                 +  +   ++  Y+ 
Sbjct: 81  GQQIHARILKNG------------DFYAR-----------------NEYIETKLVIFYAK 111

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
           C  +E A+ +F  +  +++ SW ++I    + G    AL  F  M +  +  D F + +V
Sbjct: 112 CDALEVAEVLFSKLRVRNVFSWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNV 171

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
             AC  +     G  V   V   GL     +++SL D Y KCG                 
Sbjct: 172 CKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 231

Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                            +A+ L ++MR  GV+PT +T +  LSA  +   ++EG K   A
Sbjct: 232 VAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASANMRGIEEG-KQSHA 290

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           +     ++ +    + +++ + + G ++ A  + ++M  E DV  W+ ++ G V  G
Sbjct: 291 IAIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRM-IEKDVVTWNLLISGYVHQG 346



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 44/89 (49%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    +S+  I   L+ MY +CG+   A  +F       
Sbjct: 545 LSACVNLASLHFGRSIHGYIIRNQQHSSSASIETSLVDMYAKCGDINKAERVFGSKLYSE 604

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
              +NAMI  +   G+ ++++ L+  + +
Sbjct: 605 LPLYNAMISAYALYGNVKEAVALYRSLEE 633


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 186/613 (30%), Positives = 302/613 (49%), Gaps = 109/613 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPR 69
           ++++C+    + VG+      +K G   S + +   L+ M+++  N   +A  +FD+M  
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGK 125
            N  +W  MI   M++G   ++++ F  M     + + F+ + + S  A A+L  L  GK
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS--ACAELENLSLGK 289

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKC---GDFNSANQVLNMMKEPDDFCLSALISGY- 181
           Q+HS  + +GL  D  +  SLV++Y KC   G  +   +V + M++      +ALI+GY 
Sbjct: 290 QLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYM 347

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTL 240
            NC                               N  TEA+ LF +M   G +E +  T 
Sbjct: 348 KNC-------------------------------NLATEAINLFSEMITQGHVEPNHFTF 376

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +S   AC +L     GKQV G A K G+  +  VA                         
Sbjct: 377 SSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA------------------------- 411

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                 N++I+++    R+EDA+  F ++  K+L+S+N+ + G  +N +  +A  L   +
Sbjct: 412 ------NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEI 465

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            + +L +  F+ AS++S  AN+ S+  GEQ+ ++V  +GL  +Q +  +L+  Y KCG  
Sbjct: 466 TERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                             L  FN+M   GVKP  +T+ AILSAC
Sbjct: 526 DTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV EG + F++M   + I P++EHY+CMVDL  RAG L +A   I  MPF+ADV +
Sbjct: 586 SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLV 645

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W + L  C  H +  LG+  A +++ELDP    AYIQLS+I+A +G+WE+S+ +R  M+E
Sbjct: 646 WRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705

Query: 568 KHVGKLPGCSWAD 580
           +++ K  GCSW +
Sbjct: 706 RNLVKEGGCSWIE 718



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 120/508 (23%), Positives = 218/508 (42%), Gaps = 92/508 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---GNPTDALLLF 64
           L+ +  +C    ++ +GKQLH   ++ G+++    +   L+ MY +C   G+  D   +F
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRKVF 328

Query: 65  DEMPRRNCFSWNAMIEGFMK-LGHKEKSLQLFNVMPQKNDFSWNMLI--SGF-AKADLAA 120
           D M   +  SW A+I G+MK      +++ LF+ M  +     N     S F A  +L+ 
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              GKQ+       GL  +S +                AN V++M  + D          
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSV----------------ANSVISMFVKSD---------- 422

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
                +M DA+R F+  ++ + V +N+ + G   N    +A  L  ++    +   A T 
Sbjct: 423 -----RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTF 477

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           AS+LS  +++G +  G+Q+H    K+G+  +  V +AL+  YSK                
Sbjct: 478 ASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSK---------------- 521

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CG I+ A  +F  M N+++ISW SMI G +++G  I  L+ F  M
Sbjct: 522 ---------------CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQM 566

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS------LVDFY 414
            +  ++ ++ +  +++SAC+++  +  G + F       +  D  I         +VD  
Sbjct: 567 IEEGVKPNEVTYVAILSACSHVGLVSEGWRHFN-----SMYEDHKIKPKMEHYACMVDLL 621

Query: 415 CKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP- 471
           C+ G   DA    N M     +  ++ +   L AC      + G+    A +    +DP 
Sbjct: 622 CRAGLLTDAFEFINTM---PFQADVLVWRTFLGACRVHSNTELGKL---AARKILELDPN 675

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           E   Y  + +++A AG   E+  +  +M
Sbjct: 676 EPAAYIQLSNIYACAGKWEESTEMRRKM 703



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 157/347 (45%), Gaps = 50/347 (14%)

Query: 139 DSVLGSSLVNLYGKCGDFNSAN----QVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           DSV  SSL+    +  DF        +++    EPD    ++LIS Y+  G    A  VF
Sbjct: 61  DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120

Query: 195 D---RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
           +   R      V W++M++ Y +N  + +A+ +F +    G++ +     +V+ ACS+  
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSD 180

Query: 252 FLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
           F+  G+   G   K G  + DV V  +L+D + K G  S                     
Sbjct: 181 FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVK-GENS--------------------- 218

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                    E+A  +F  M   ++++W  MI    Q G P EA+  F +M       DKF
Sbjct: 219 --------FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKF 270

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA-----LALF 425
           +L+SV SACA + +L LG+Q+ +     GL  D  +  SLVD Y KC  D        +F
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVF 328

Query: 426 NEMRNTGVKPTIITFTAILSA-CDHCGLVKEGQKWFDAMKWQYHIDP 471
           + M +     +++++TA+++    +C L  E    F  M  Q H++P
Sbjct: 329 DRMEDH----SVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEP 371



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 44/248 (17%)

Query: 351 IEALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           + ALDL   M +  +R MD  + +S++ +C       LG+ V AR+    ++ D ++  S
Sbjct: 46  VSALDL---MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNS 102

Query: 410 LVDFYCKCG------------------------------------YDALALFNEMRNTGV 433
           L+  Y K G                                     DA+ +F E    G+
Sbjct: 103 LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL 162

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA-GCLNEA 492
            P    +TA++ AC +   V  G+     +    H + ++     ++D+F +       A
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENA 222

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
             + ++M  E +V  W+ ++  C+  G      +    M+    E+      LSS+F+  
Sbjct: 223 YKVFDKMS-ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFES--DKFTLSSVFSAC 279

Query: 553 GEWEKSSL 560
            E E  SL
Sbjct: 280 AELENLSL 287



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 7/103 (6%)

Query: 486 AGCLNEAVNLIEQMPFEA----DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NAC 540
           AG L  AV+ ++ M  +     D   +SS+L+ C+   D  LG+ V  R+IE D E ++ 
Sbjct: 39  AGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV 98

Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIA 583
            Y  L S+++ SG+  K+  + + MR    GK    SW+  +A
Sbjct: 99  LYNSLISLYSKSGDSAKAEDVFETMR--RFGKRDVVSWSAMMA 139


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 187/596 (31%), Positives = 287/596 (48%), Gaps = 104/596 (17%)

Query: 19  HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAM 78
           H  H+  Q++   L  G+      IA +L+      G  + A  LFD+ P  + F WNA+
Sbjct: 87  HKTHL-NQIYAKLLVTGLQYGGFLIA-KLVNKASNIGEVSCARKLFDKFPDPDVFLWNAI 144

Query: 79  IEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVN 134
           +  + + G    +++++  M       + FS+  ++   A + L ALE G+++H  I  +
Sbjct: 145 VRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLK--ACSALPALEMGRRVHGQIFRH 202

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           G                                E D F  + L++ YA CG++  A  VF
Sbjct: 203 GF-------------------------------ESDVFVQNGLVALYAKCGEIVRANAVF 231

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
            R  D + V W S+ISGY  N +  EAL +F +MR+  V  D   L SVL A + +  LE
Sbjct: 232 GRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLE 291

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
           HGK +HG   K+G+                       C+       +D  LL ++ ++Y+
Sbjct: 292 HGKSIHGCVIKMGL----------------------ECE-------FD--LLISLTSLYA 320

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            CG +  A+  F  + N SLI WN+MI G  +NG   EA++LF  M   ++R D  ++ S
Sbjct: 321 KCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTS 380

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------- 417
            I+ACA I SLEL   +   +++    +D I++TSL+D Y KC                 
Sbjct: 381 SIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKD 440

Query: 418 ----------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                           G +++ LF+ MR  GV P  +TF  +L+AC + GLV+EG   F 
Sbjct: 441 VVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFH 500

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
            M+  Y I+P  +HY+C+VDL  RAG L+ A N +  MP E  V +W ++L  C  H   
Sbjct: 501 RMR-DYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHV 559

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            LG   AER+  LDP N   Y+QLS+++A+S  W+  + +R +MREK + K  G S
Sbjct: 560 TLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYS 615



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 128/528 (24%), Positives = 238/528 (45%), Gaps = 89/528 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+   ++ +G+++H    + G   S + + N L+ +Y +CG    A  +F  +  R
Sbjct: 179 VLKACSALPALEMGRRVHGQIFRHG-FESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR 237

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYGKQIH 128
              SW ++I G+ + G   ++L++F+ M + N    W  L+S   A  D+  LE+GK IH
Sbjct: 238 TIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIH 297

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
             ++  GL+ +  L  SL +LY KCG    A    N ++ P     +A+ISG        
Sbjct: 298 GCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISG-------- 349

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                                  Y+ N    EA+ LF  M+   +  D+ T+ S ++AC+
Sbjct: 350 -----------------------YVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACA 386

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            +G LE  + +  +       +DVIV ++L+DTY+K                        
Sbjct: 387 QIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAK------------------------ 422

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  CG ++ A+ +F  +P+K ++ W++M+VG   +G   E++ LF  M +  +  +
Sbjct: 423 -------CGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPN 475

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEM 428
             +   +++AC N   +E G  +F R+   G++        +VD   + G+   A +N +
Sbjct: 476 DVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRA-YNFV 534

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG 487
            N  ++P +  + A+LSAC     V  G+    A +  + +DP    HY  + +L+A + 
Sbjct: 535 MNMPIEPGVSVWGALLSACKIHRHVTLGEY---AAERLFSLDPYNTGHYVQLSNLYA-SS 590

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           CL                  W  + +  V   +KGL + +   +IE++
Sbjct: 591 CL------------------WDCVAKVRVLMREKGLTKHLGYSVIEIN 620



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 126/259 (48%), Gaps = 36/259 (13%)

Query: 2   DTRIDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           + R D++A   +L++      +  GK +H   +K G L     +   L  +Y +CG+   
Sbjct: 269 NVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMG-LECEFDLLISLTSLYAKCGHVMV 327

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKAD 117
           A L F+++   +   WNAMI G++K G+ E++++LF +M  KN    ++ ++    A A 
Sbjct: 328 ARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQ 387

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           + +LE  + +  +I ++    D ++ +SL++ Y KCG  + A  V + + + D       
Sbjct: 388 IGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKD------- 440

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                                    V+W++M+ GY  + +  E+++LFH MR+ GV  + 
Sbjct: 441 ------------------------VVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPND 476

Query: 238 STLASVLSACSSLGFLEHG 256
            T   +L+AC + G +E G
Sbjct: 477 VTFVGLLTACKNSGLVEEG 495



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 151/386 (39%), Gaps = 56/386 (14%)

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
           D   AS + D+  K  +     KL      Y   L+  ++   S+ G +  A+ +F   P
Sbjct: 75  DKFYASLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFP 134

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
           +  +  WN+++   S++G    A++++  M    +  D FS   V+ AC+ + +LE+G +
Sbjct: 135 DPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRR 194

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCG-------------------------------- 418
           V  ++   G +SD  +   LV  Y KCG                                
Sbjct: 195 VHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQ 254

Query: 419 -YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
             +AL +F+EMR T V+P  I   ++L A      ++ G K       +  ++ E +   
Sbjct: 255 PIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHG-KSIHGCVIKMGLECEFDLLI 313

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
            +  L+A+ G +  A     Q+     +  W++++ G V +G        AE  IEL   
Sbjct: 314 SLTSLYAKCGHVMVARLFFNQVE-NPSLIFWNAMISGYVKNG-------YAEEAIELFRL 365

Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLA 597
                I+  SI  TS           I     +G L    W D       F + + +  +
Sbjct: 366 MKSKNIRPDSITVTSS----------IAACAQIGSLELARWMDEYISMSEFRNDVIVNTS 415

Query: 598 NFDEIKQHQSADFCDYIHGFDQARLP 623
             D   +  S D   ++  FD  R+P
Sbjct: 416 LIDTYAKCGSVDMARFV--FD--RIP 437


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 195/601 (32%), Positives = 295/601 (49%), Gaps = 85/601 (14%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCG-NPTD----ALLLFDEMPRR--NCFSWNA 77
           KQ+H   +K G L++TL   ++L++    C  +P+     AL LF  +  +  N F WN 
Sbjct: 42  KQIHSLIIKSG-LHNTLFAQSKLIEF---CALSPSRDLSYALSLFHSIHHQPPNIFIWNT 97

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILV 133
           +I           SL LF+ M       N  ++  L    AK+   A    KQ+H+H L 
Sbjct: 98  LIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSK--ATHEAKQLHAHALK 155

Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
             L     + +SL+++Y + G+   A  V +     D    +ALI+GY + G ++DARR+
Sbjct: 156 LALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRL 215

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253
           FD       V WN+MI+GY+ +    EAL  F +M+   V  + ST+ SVLSAC  L  L
Sbjct: 216 FDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSL 275

Query: 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
           E GK +                S + D    RG   +              L+N ++ +Y
Sbjct: 276 ELGKWI---------------GSWVRD----RGFGKN------------LQLVNALVDMY 304

Query: 314 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
           S CG I  A+ +F  M +K +I WN+MI G        EAL LF  M + ++  +  +  
Sbjct: 305 SKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFL 364

Query: 374 SVISACANISSLELGEQVFARV--TIIGLDSDQIIS--TSLVDFYCKCG----------- 418
           +V+ ACA++ +L+LG+ V A +   + G  +   +S  TS++  Y KCG           
Sbjct: 365 AVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRS 424

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                   AL LF EM N G +P  ITF  +LSAC   G V+ G
Sbjct: 425 MGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELG 484

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            ++F +M   Y I P+++HY CM+DL AR+G  +EA  L+  M  E D  +W S+L  C 
Sbjct: 485 HRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACR 544

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            HG    G  VAER+ EL+PEN+ AY+ LS+I+A +G W+  + IR  + +K + K+PGC
Sbjct: 545 IHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGC 604

Query: 577 S 577
           +
Sbjct: 605 T 605



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 144/518 (27%), Positives = 235/518 (45%), Gaps = 110/518 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L +SC    + H  KQLH H LK   L+    +   L+ MY + G    A L+FD+   R
Sbjct: 133 LFKSCAKSKATHEAKQLHAHALKLA-LHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLR 191

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-------------- 116
           +  S+ A+I G++  GH + + +LF+ +P K+  SWN +I+G+ ++              
Sbjct: 192 DAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQ 251

Query: 117 -------------------DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
                               L +LE GK I S +   G   +  L ++LV++Y KCG+  
Sbjct: 252 EADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIG 311

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
           +A ++ + M++ D                                ++WN+MI GY   + 
Sbjct: 312 TARKLFDGMEDKD-------------------------------VILWNTMIGGYCHLSL 340

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
             EAL+LF  M R  V  +  T  +VL AC+SLG L+ GK VH +      ID  +  + 
Sbjct: 341 YEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAY------IDKNLKGTG 394

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
            ++  S                     L  ++I +Y+ CG +E A+ +FR+M ++SL SW
Sbjct: 395 NVNNVS---------------------LWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASW 433

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N+MI GL+ NG    AL LF  M     + D  +   V+SAC     +ELG + F+    
Sbjct: 434 NAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFS---- 489

Query: 398 IGLDSDQIISTSLVDFYCKCGYDALAL---FNE----MRNTGVKPTIITFTAILSACDHC 450
             ++ D  IS  L  + C    D LA    F+E    M N  ++P    + ++L+AC   
Sbjct: 490 -SMNKDYGISPKLQHYGCMI--DLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIH 546

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVDLFARAG 487
           G V+ G+   + +   + ++PE    Y  + +++A AG
Sbjct: 547 GQVEFGEYVAERL---FELEPENSGAYVLLSNIYAGAG 581


>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 188/643 (29%), Positives = 307/643 (47%), Gaps = 111/643 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L   + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 181 KACGALQWSRFGRGVHGYVVKAG-LEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 239

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++LF+ M ++      + +S    A A++  +E GKQ H+ 
Sbjct: 240 VAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGVEEGKQSHAI 299

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNGL+ D++LG+SL+N Y K G    A  V + M + D    + +ISGY         
Sbjct: 300 AIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIISGYVQ------- 352

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                               G + N     A+ +   MR   +  D  TLA+++SA +  
Sbjct: 353 -------------------QGLVEN-----AIYMCQLMRLEKLKYDCVTLATLMSAAART 388

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK+V  +  +     D+++AS ++D Y+K G   DA K+F      D IL NT++
Sbjct: 389 QNLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLL 448

Query: 311 TVYSSC-----------------------------------GRIEDAKHIFRTM------ 329
             Y+                                     G +++AK +F  M      
Sbjct: 449 AAYAESGLSGEGLRLFYGMQLEGVPPNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIF 508

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  LISW +M+ G+ QNG   EA+     M +  LR +  S+   +SACAN++SL  G 
Sbjct: 509 PN--LISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANLASLHFGR 566

Query: 390 QVFARVTIIGLDSDQI-ISTSLVDFYCKCG------------------------------ 418
            +   +      S  + I TSLVD Y KCG                              
Sbjct: 567 SIHGYIIRNLQHSSSVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLYNAMISAYALY 626

Query: 419 ---YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
               +A+AL+  +   G+KP  IT T +LSAC+H G   +  +    M  ++ ++P +EH
Sbjct: 627 GNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDNNQATEIVTEMVSKHGMNPCLEH 686

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y  MVDL A AG  ++A+ LIE+MP++ D  M  S++  C       L   ++ ++IE +
Sbjct: 687 YGLMVDLLASAGQTDKALRLIEEMPYKPDARMIQSLVASCNKQPKSELVDYLSRQLIESE 746

Query: 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           P+N+  Y+ +S+ +A  G W++   +R+IM+ K + K PGCSW
Sbjct: 747 PDNSGNYVTISNAYAVEGSWDEVVKMREIMKAKGLKKKPGCSW 789



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 248/520 (47%), Gaps = 77/520 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G        I  +L+  Y +C     A +LF ++
Sbjct: 74  GEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKL 133

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             RN FSW A+I    ++G  E +L  F  M +   F  N ++    KA   L    +G+
Sbjct: 134 RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGR 193

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H +++  GL+    + SSL ++YGK                               CG
Sbjct: 194 GVHGYVVKAGLEDCVFVASSLADMYGK-------------------------------CG 222

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++DAR+VFD   + + V WN+++ GY+ N  + EA+ LF  MR+ GV     T+++ LS
Sbjct: 223 VLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLS 282

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A +++G +E GKQ H  A   G+  D I+ ++LL+ Y K G+                  
Sbjct: 283 ASANMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGL------------------ 324

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD- 364
                        IE A+ +F  M +K +++WN +I G  Q G  +E     C + +L+ 
Sbjct: 325 -------------IEYAEMVFDRMIDKDVVTWNLIISGYVQQGL-VENAIYMCQLMRLEK 370

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDAL 422
           L+ D  +LA+++SA A   +L+LG++V         +SD +++++++D Y KCG   DA 
Sbjct: 371 LKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAK 430

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            +F    ++  +  +I +  +L+A    GL  EG + F  M+ +  + P +  ++ ++  
Sbjct: 431 KVF----DSTAEKDLILWNTLLAAYAESGLSGEGLRLFYGMQLE-GVPPNVITWNLIILS 485

Query: 483 FARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHG 519
             R G ++EA ++  QM       ++  W++++ G V +G
Sbjct: 486 LLRNGEVDEAKDMFLQMQSSGIFPNLISWTTMMNGMVQNG 525



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 142/358 (39%), Gaps = 64/358 (17%)

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           D+  + SS  +   +S    N E  EAL L  +M    +         +L  C     L 
Sbjct: 28  DQALNPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLC 87

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            GKQ+H    K G            D Y+K                 +  +   ++  Y+
Sbjct: 88  TGKQIHARILKNG------------DFYAK-----------------NEYIETKLVIFYA 118

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            C  ++ A+ +F  +  +++ SW ++I    + G    AL  F  M + ++  D F + +
Sbjct: 119 KCDALDIAEVLFTKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPN 178

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------- 419
           V  AC  +     G  V   V   GL+    +++SL D Y KCG                
Sbjct: 179 VCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERN 238

Query: 420 ------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                             +A+ LF++MR  GV+PT +T +  LSA  + G V+EG K   
Sbjct: 239 VVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGVEEG-KQSH 297

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           A+     ++ +    + +++ + + G +  A  + ++M  + DV  W+ I+ G V  G
Sbjct: 298 AIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRM-IDKDVVTWNLIISGYVQQG 354



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 43/84 (51%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    +S++ I   L+ MY +CG+   A  +F       
Sbjct: 553 LSACANLASLHFGRSIHGYIIRNLQHSSSVSIETSLVDMYAKCGDINKAEKVFGSKLYSE 612

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLF 95
              +NAMI  +   G+ ++++ L+
Sbjct: 613 LPLYNAMISAYALYGNLKEAIALY 636


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 294/619 (47%), Gaps = 114/619 (18%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDAL 61
           +YL+  L   N    IH  + L LH          L   N LL + + C    G+   + 
Sbjct: 20  NYLSNGLNFFNQLKHIH-ARLLRLH----------LDQDNYLLNLILCCALDFGSTNYSK 68

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL 121
           L+F ++   N F WN MI G +     + ++ L+  M        N  I    KA    L
Sbjct: 69  LVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKL 128

Query: 122 EY--GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +   G +IHS ++  G D D  + +SL++LY K                           
Sbjct: 129 DVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVK--------------------------- 161

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               C   +DA +VFD   D + V W ++I+GYIS+    EA+  F K+   G+  D+ +
Sbjct: 162 ----CDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFS 217

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L  VL+AC+ LG    G+ +  +    G+  +V VA++LLD Y K               
Sbjct: 218 LVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK--------------- 262

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG +E A  IF  MP K ++SW++MI G + NG P +ALDLF  
Sbjct: 263 ----------------CGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M   +L+ D +++  V+SACA + +L+LG    + +      S+ ++ T+L+D Y KCG 
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 419 ------------------YDAL--------------ALFNEMRNTGVKPTIITFTAILSA 446
                             ++A+              +LF+ +   G++P   TF  +L  
Sbjct: 367 VTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H G V EG+++F+ MK  + + P IEHY CMVDL  RAG LNEA  LI  MP + +  
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L GC  H D  L  +V +++IEL+P N+  Y+QLS+I++ +  WE++  IR  M+
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMK 546

Query: 567 EKHVGKLPGCSW--ADGIA 583
           E+ + K+  CSW   DGI 
Sbjct: 547 EQQIQKIRACSWIEIDGIV 565


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 294/619 (47%), Gaps = 114/619 (18%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDAL 61
           +YL+  L   N    IH  + L LH          L   N LL + + C    G+   + 
Sbjct: 20  NYLSNGLNFFNQLKHIH-ARLLRLH----------LDQDNYLLNLILCCALDFGSTNYSK 68

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL 121
           L+F ++   N F WN MI G +     + ++ L+  M        N  I    KA    L
Sbjct: 69  LVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKL 128

Query: 122 EY--GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +   G +IHS ++  G D D  + +SL++LY K                           
Sbjct: 129 DVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVK--------------------------- 161

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               C   +DA +VFD   D + V W ++I+GYIS+    EA+  F K+   G+  D+ +
Sbjct: 162 ----CDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFS 217

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L  VL+AC+ LG    G+ +  +    G+  +V VA++LLD Y K               
Sbjct: 218 LVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK--------------- 262

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG +E A  IF  MP K ++SW++MI G + NG P +ALDLF  
Sbjct: 263 ----------------CGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M   +L+ D +++  V+SACA + +L+LG    + +      S+ ++ T+L+D Y KCG 
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 419 ------------------YDAL--------------ALFNEMRNTGVKPTIITFTAILSA 446
                             ++A+              +LF+ +   G++P   TF  +L  
Sbjct: 367 VTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H G V EG+++F+ MK  + + P IEHY CMVDL  RAG LNEA  LI  MP + +  
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L GC  H D  L  +V +++IEL+P N+  Y+QLS+I++ +  WE++  IR  M+
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMK 546

Query: 567 EKHVGKLPGCSW--ADGIA 583
           E+ + K+  CSW   DGI 
Sbjct: 547 EQQIQKIRACSWIEIDGIV 565


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 180/619 (29%), Positives = 295/619 (47%), Gaps = 77/619 (12%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M+T  +    LLQ+ ++  S    KQLH   L+  + + +L   + +L +Y       D+
Sbjct: 1   MNTTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSL--LSTILSIYSNLNLLHDS 58

Query: 61  LLLFDEMPRR-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--D 117
           LL+F+ +P      +W ++I  +   G    SL  F  M     +  + +     K+   
Sbjct: 59  LLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTL 118

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK---CGDFNSANQVLNMMKEPDDFCL 174
           +  L +G+ +H  I+  G+ FD    ++L+N+Y K     + N+  +V +  K  D +  
Sbjct: 119 MKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSK 178

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
               S Y     +   R+VF+       V WN++ISG   N    +AL++  +M    + 
Sbjct: 179 KEKESYY-----LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLR 233

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D+ TL+SVL   +    L  GK++HG+A + G   DV + S+L+D Y+K          
Sbjct: 234 PDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAK---------- 283

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                C R++D+  +F  +P    ISWNS+I G  QNG   E L
Sbjct: 284 ---------------------CTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGL 322

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
             F  M    ++ +  S +S++ ACA++++L LG+Q+   +     D +  I+++LVD Y
Sbjct: 323 KFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMY 382

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            KCG                                 YDA++LF  M   GVKP  + F 
Sbjct: 383 AKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFM 442

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           A+L+AC H GLV E  K+F++M   Y I P +EHY+ + DL  R G L EA   I  M  
Sbjct: 443 AVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHI 502

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           E    +WS++L  C  H +  L  KV++++  +DP+N  AY+ LS+I++ +G W+ +  +
Sbjct: 503 EPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKL 562

Query: 562 RDIMREKHVGKLPGCSWAD 580
           R  MR+K + K P CSW +
Sbjct: 563 RIAMRDKGMKKKPACSWIE 581


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 180/593 (30%), Positives = 283/593 (47%), Gaps = 99/593 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK++H   L++ I +S + +A  L+ MY +CG    A  LF  +  R+  +W+A+I   +
Sbjct: 348 GKEIHGCALQQRI-DSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALV 406

Query: 84  KLGHKEKSLQLFNVMP-QKNDFSWNMLISGF-AKADLAALEYGKQIHSHILVNGLDFDSV 141
           + G+ E++L LF  M  QK   +   L+S   A ADL+ L+ GK IH   +   +D D  
Sbjct: 407 QTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLS 466

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
            G+                               AL+S YA CG    A   F+R +   
Sbjct: 467 TGT-------------------------------ALVSMYAKCGFFTAALTTFNRMSSRD 495

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            V WNS+I+GY    +   A+ +F+K+R + +  DA T+  V+ AC+ L  L+ G  +HG
Sbjct: 496 IVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHG 555

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
              K+G   D  V +AL+D Y+K                               CG +  
Sbjct: 556 LIVKLGFESDCHVKNALIDMYAK-------------------------------CGSLPS 584

Query: 322 AKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
           A+ +F +T   K  ++WN +I    QNG   EA+  F  M   +   +  +  SV+ A A
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------- 419
            +++   G    A +  +G  S+ ++  SL+D Y KCG                      
Sbjct: 645 YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNA 704

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                        A+ALF+ M+ + V+   ++F ++LSAC H GLV+EG+K F +M  +Y
Sbjct: 705 MLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKY 764

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
           HI P++EHY+CMVDL  RAG  +E +  I+ MP E D G+W ++L  C  H +  LG   
Sbjct: 765 HIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVA 824

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            + +++L+P N   ++ LSSI+A SG W  +   R  M +  + K PGCSW +
Sbjct: 825 LDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVE 877



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 143/553 (25%), Positives = 242/553 (43%), Gaps = 119/553 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++  G   H    ++G L   + I   L+ MY + G+   A  +FD+MP+R
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRG-LERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKR 193

Query: 71  NCFSWNAMIEGFMKLGHKE---------KSLQLFNVMPQKNDFSWNMLISGFAKADLAAL 121
           +  +WNAMI G   L   E         +S+QL  V P  +  S   L  G  K  L+ +
Sbjct: 194 DVVAWNAMIAG---LSQSEDPCEAVDFFRSMQLVGVEP--SSVSLLNLFPGICK--LSNI 246

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           E  + IH ++     DF S + + L++LY KC                            
Sbjct: 247 ELCRSIHGYVFRR--DFSSAVSNGLIDLYSKC---------------------------- 276

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTL 240
              G ++ ARRVFD+  D   V W +M++GY  N    E L LF KM+   V +   S +
Sbjct: 277 ---GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAV 333

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           ++ L+A  ++  LE GK++HG A +  +  D++VA+ L+  Y+K                
Sbjct: 334 SAFLAAAETID-LEKGKEIHGCALQQRIDSDILVATPLMVMYAK---------------- 376

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CG  E AK +F  +  + L++W+++I  L Q G P EAL LF  M
Sbjct: 377 ---------------CGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEM 421

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
               ++ ++ +L S++ ACA++S L+LG+ +        +DSD    T+LV  Y KCG  
Sbjct: 422 QNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFF 481

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                          Y+A+ +F ++R + + P   T   ++ AC
Sbjct: 482 TAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPAC 541

Query: 448 DHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
                + +G       +K  +  D  ++  + ++D++A+ G L  A  L  +  F  D  
Sbjct: 542 ALLNDLDQGTCIHGLIVKLGFESDCHVK--NALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 507 MWSSILRGCVAHG 519
            W+ I+   + +G
Sbjct: 600 TWNVIIAAYMQNG 612



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 134/590 (22%), Positives = 252/590 (42%), Gaps = 110/590 (18%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           +I + + +H +  ++   ++   ++N L+ +Y +CG+   A  +FD+M  ++  SW  M+
Sbjct: 245 NIELCRSIHGYVFRRDFSSA---VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMM 301

Query: 80  EGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYGKQIHSHILVNGLD 137
            G+   G   + L+LF+ M   N   +    +S F A A+   LE GK+IH   L   +D
Sbjct: 302 AGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRID 361

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            D ++ + L+ +Y KCG+   A Q+   ++  D                           
Sbjct: 362 SDILVATPLMVMYAKCGETEKAKQLFWGLQGRD--------------------------- 394

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                V W+++I+  +      EAL LF +M+   +  +  TL S+L AC+ L  L+ GK
Sbjct: 395 ----LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
            +H    K  +  D+   +AL+  Y+K G  + A   F+ +   D +             
Sbjct: 451 SIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIV------------- 497

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
                             +WNS+I G +Q G P  A+D+F  +    +  D  ++  V+ 
Sbjct: 498 ------------------TWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVP 539

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------- 418
           ACA ++ L+ G  +   +  +G +SD  +  +L+D Y KCG                   
Sbjct: 540 ACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 419 ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                           +A++ F++MR     P  +TF ++L A  +    +EG   F A 
Sbjct: 600 TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHAC 658

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV--AHGDK 521
             Q          + ++D++A+ G L+ +  L  +M  + D   W+++L G     HGD+
Sbjct: 659 IIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDR 717

Query: 522 GLG--RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
            +     + E  +++D   + +++ + S    +G  E+   I   M +K+
Sbjct: 718 AIALFSLMQESQVQID---SVSFVSVLSACRHAGLVEEGRKIFHSMSDKY 764



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/559 (23%), Positives = 232/559 (41%), Gaps = 116/559 (20%)

Query: 3   TRIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILN--STLPIANRLLQMYMRCGNPT 58
           T  +YL   RLL SC   + +    Q+H   +  G  +  S   + N L  ++ +C    
Sbjct: 28  TYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITHLIN-LYSLFHKCDL-- 81

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFA 114
            A  +FD  P  +   WN+MI  + +     ++L+++  M +K    + +++  ++    
Sbjct: 82  -ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT 140

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            A    L+ G   H  I   GL+ D  +G+ LV++Y K                      
Sbjct: 141 GA--LNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKM--------------------- 177

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
                     G +  AR VFD+      V WN+MI+G   + +  EA+  F  M+  GV 
Sbjct: 178 ----------GDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVE 227

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
             + +L ++      L  +E  + +HG+  +                             
Sbjct: 228 PSSVSLLNLFPGICKLSNIELCRSIHGYVFR----------------------------- 258

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
               + + + + N +I +YS CG ++ A+ +F  M ++  +SW +M+ G + NG  +E L
Sbjct: 259 ----RDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVL 314

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +LF  M   ++R++K S  S   A A    LE G+++        +DSD +++T L+  Y
Sbjct: 315 ELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMY 374

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            KCG                                  +AL+LF EM+N  +KP  +T  
Sbjct: 375 AKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLM 434

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           +IL AC    L+K G K       +  +D ++   + +V ++A+ G    A+    +M  
Sbjct: 435 SILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS- 492

Query: 502 EADVGMWSSILRGCVAHGD 520
             D+  W+S++ G    GD
Sbjct: 493 SRDIVTWNSLINGYAQIGD 511



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 212/487 (43%), Gaps = 76/487 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C     + +GK +H  F  K  ++S L     L+ MY +CG  T AL  F+ M
Sbjct: 433 LMSILPACADLSLLKLGKSIHC-FTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNV--MPQKNDFSWNMLISGFAKADLAALEYGK 125
             R+  +WN++I G+ ++G    ++ +F    +   N  +  M+    A A L  L+ G 
Sbjct: 492 SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH  I+  G + D  + ++L+++Y KCG   SA  + N                     
Sbjct: 552 CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKT------------------- 592

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                    D T D   V WN +I+ Y+ N    EA+  FH+MR      ++ T  SVL 
Sbjct: 593 ---------DFTKD--EVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A + L     G   H    ++G + + +V ++L+D Y+K G    + KLF+E+   DT+ 
Sbjct: 642 AAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTV- 700

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                         SWN+M+ G + +G    A+ LF  M +  +
Sbjct: 701 ------------------------------SWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGYDALAL 424
           ++D  S  SV+SAC +   +E G ++F  ++    +  D      +VD   + G     L
Sbjct: 731 QIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAG-----L 785

Query: 425 FNE----MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           F+E    ++   V+P    + A+L +C     VK G+   D +      +P   H+  + 
Sbjct: 786 FDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNP--AHFVVLS 843

Query: 481 DLFARAG 487
            ++A++G
Sbjct: 844 SIYAQSG 850


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 180/610 (29%), Positives = 288/610 (47%), Gaps = 104/610 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   +++C     I VG+Q+H   +K     S L + N L+ MY + G   D  LLF  M
Sbjct: 145 LGSTVRACAELGDIGVGRQVHAQAMKSEN-GSDLIVQNALVTMYSKSGLVADGFLLFGRM 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAKADLAALE 122
             ++  SW ++I GF + G + ++LQ+F  M        N+F +  + S  A   L +LE
Sbjct: 204 REKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFS--ACGVLGSLE 261

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           YG+QIHS  +   LD +S  G SL ++Y                               A
Sbjct: 262 YGEQIHSLSVKYRLDHNSYAGCSLSDMY-------------------------------A 290

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            C K+  A+RVF        V WNS+I+        +EA++L  +MR +G+  D  T+  
Sbjct: 291 RCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRG 350

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L AC     ++HG+ +H +  K+G+  DV V                            
Sbjct: 351 LLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVC--------------------------- 383

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
               N+++++Y+ C     A  +F    ++ +++WNS++    Q+        LF  + +
Sbjct: 384 ----NSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLFNLLQR 439

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
               +D+ SL +V+SA A +   E+ +QV      +GL +D ++S  L+D Y KCG    
Sbjct: 440 SLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSLDD 499

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                           AL LF  MRN GV+P  +TF  +L+AC 
Sbjct: 500 AVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNHVTFVGVLTACS 559

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
             GLV EG  ++  M+ ++ + P  EH SC++DL ARAG L EA   ++QMPFE D+ MW
Sbjct: 560 RVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKFVDQMPFEPDIVMW 619

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L G   H D  +GR+ AE ++ +DP ++ AY+ L +I++ SG+W + + ++  MR  
Sbjct: 620 KTLLAGSKTHNDVEMGRRAAEGILNIDPSHSAAYVLLCNIYSASGDWNEFARLKKAMRSS 679

Query: 569 HVGKLPGCSW 578
            V K PG SW
Sbjct: 680 GVKKSPGKSW 689



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 165/376 (43%), Gaps = 67/376 (17%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LI+ Y  C     AR VFD     + V W S+I+ +  N   T+AL LF  M R+G   D
Sbjct: 82  LITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPD 141

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
              L S + AC+ LG +  G+QVH  A K     D+IV +AL+  YSK G+ +D   LF 
Sbjct: 142 QFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVADGFLLFG 201

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            ++  D I                               SW S+I G +Q G  +EAL +
Sbjct: 202 RMREKDPI-------------------------------SWGSIIAGFAQQGCEMEALQI 230

Query: 357 FCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           F  M    +   ++F   SV SAC  + SLE GEQ+ +      LD +     SL D Y 
Sbjct: 231 FREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYA 290

Query: 416 KC-----------GYD----------------------ALALFNEMRNTGVKPTIITFTA 442
           +C           G D                      A+ L +EMR +G++P  IT   
Sbjct: 291 RCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRG 350

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L AC  C  ++ G +   +   +  +D ++   + ++ ++AR    + A+++  +   +
Sbjct: 351 LLCACVGCDAIQHG-RLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETR-D 408

Query: 503 ADVGMWSSILRGCVAH 518
            DV  W+SIL  CV H
Sbjct: 409 RDVVTWNSILTACVQH 424



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 141/606 (23%), Positives = 253/606 (41%), Gaps = 117/606 (19%)

Query: 15  CNTHHSIHVGKQLHLHFLK---KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           C+   ++ +G  +H H L      ++ +T+ + N L+ MY RC  P  A L+FDEMP +N
Sbjct: 48  CSRLRALCLGCLVHRHLLASPDPNLVRNTV-LNNHLITMYGRCAAPESARLVFDEMPAKN 106

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIHS 129
             SW ++I    +      +L LF+ M +         +    +  A+L  +  G+Q+H+
Sbjct: 107 PVSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHA 166

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
             + +    D ++ ++LV +Y K G       +   M+E D     ++I+G+A  G   +
Sbjct: 167 QAMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEME 226

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A ++F             +  G    NE       FH               SV SAC  
Sbjct: 227 ALQIFREM----------VAEGMHHPNE-------FH-------------FGSVFSACGV 256

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           LG LE+G+Q+H  + K  +  +     +L D Y++                         
Sbjct: 257 LGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYAR------------------------- 291

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                 C ++E AK +F  +    L+SWNS+I   S  G   EA+ L   M    LR D 
Sbjct: 292 ------CKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDG 345

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNE 427
            ++  ++ AC    +++ G  + + +  +GLD D  +  SL+  Y +C     A+ +F+E
Sbjct: 346 ITVRGLLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHE 405

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY-------------------H 468
            R+  V    +T+ +IL+AC     ++   K F+ ++                      +
Sbjct: 406 TRDRDV----VTWNSILTACVQHQHLEVVFKLFNLLQRSLPSLDRISLNNVLSASAELGY 461

Query: 469 IDPEIEHYSC---------------MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +   + ++C               ++D +A+ G L++AV L E M   +DV  WSS++ 
Sbjct: 462 FEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSLI- 520

Query: 514 GCVAHGDKGLGRKVAE-----RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
             V +   G  RK  +     R + + P N   ++ + +  +  G  ++      IM  +
Sbjct: 521 --VGYAQSGYPRKALDLFARMRNLGVRP-NHVTFVGVLTACSRVGLVDEGCYYYSIMEPE 577

Query: 569 HVGKLP 574
           H G LP
Sbjct: 578 H-GVLP 582



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 141/353 (39%), Gaps = 78/353 (22%)

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLAS--------------VLSACSSLGFLEHGKQVH 260
            N +   L L+H  R +  L    ++ S              +L+ CS L  L  G  VH
Sbjct: 2   QNPNGTILQLYHSGRLSAALHAFQSIPSSPAPAPLSAATYAALLATCSRLRALCLGCLVH 61

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
            H          ++AS   +                   V +T+L N +IT+Y  C   E
Sbjct: 62  RH----------LLASPDPNL------------------VRNTVLNNHLITMYGRCAAPE 93

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            A+ +F  MP K+ +SW S+I   +QN    +AL LF +M +     D+F+L S + ACA
Sbjct: 94  SARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACA 153

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK------------------------ 416
            +  + +G QV A+       SD I+  +LV  Y K                        
Sbjct: 154 ELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGS 213

Query: 417 ---------CGYDALALFNEMRNTGV-KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                    C  +AL +F EM   G+  P    F ++ SAC   G ++ G++   ++  +
Sbjct: 214 IIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQ-IHSLSVK 272

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           Y +D        + D++AR   L  A  +   +    D+  W+SI+  C   G
Sbjct: 273 YRLDHNSYAGCSLSDMYARCKKLESAKRVFYGID-APDLVSWNSIINACSVEG 324


>gi|224082372|ref|XP_002306667.1| predicted protein [Populus trichocarpa]
 gi|222856116|gb|EEE93663.1| predicted protein [Populus trichocarpa]
          Length = 630

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 191/640 (29%), Positives = 299/640 (46%), Gaps = 128/640 (20%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + Y + L+  C +  S+   +  H   +K G LN    + NR L +Y + GN  DAL 
Sbjct: 14  TSLSYYSYLIDHCFSLKSLSFARITHAQLIKVG-LNRHTFLGNRCLDLYSQFGNVNDALK 72

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AA 120
           +FD++  +N  SWN  ++G +K  +   +  +F+ MP+++  SWN +ISG+A       A
Sbjct: 73  VFDDISSKNIVSWNICLKGLLKFDNLSLACSVFDDMPERDVVSWNSMISGYASRGYFDCA 132

Query: 121 LE----------------------------YGKQIHSHILVNGLD-FDSVLGSSLVNLYG 151
           LE                            +GK+IH  I+ +GL   + VLG+SL+++YG
Sbjct: 133 LETFWEMQKLGVRPSEFTYSILMSVVFGVRHGKEIHGSIVRSGLGALNVVLGNSLIDMYG 192

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           K    + A  V   M+E D                                + WNS+IS 
Sbjct: 193 KFSSLDYALGVFLTMEELD-------------------------------VISWNSLISV 221

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
              +     AL  F  MR  G   D  +++ V+++C +L  LE GKQ+     KVG + +
Sbjct: 222 CCQSGYPELALDKFCIMRSLGYSPDEFSVSVVITSCLNLRNLEKGKQIFALCVKVGFLCN 281

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
            I++SA +D +SK     D+ +LF E   +D+ + N+MI+ Y+ CG  ED          
Sbjct: 282 TIISSATIDLFSKCNRLEDSVRLFEEQDQWDSAVCNSMISSYARCGFREDG--------- 332

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
                                 L LF    K D+R  +F+L+SV+ +  +I  LE G Q 
Sbjct: 333 ----------------------LRLFVLTLKKDIRPTEFTLSSVLHS-TSILKLEQGTQF 369

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCGY-------------------------------- 419
            +     GL+ D I+++SLV+ Y K G+                                
Sbjct: 370 HSLAVKSGLELDAIVASSLVEMYSKFGFIDCSIKIFNKMVARDLIAWNTMIMGLTHNGRV 429

Query: 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
            +AL  F E+  TG+ P  IT   +L AC   G + EG   F +M+ +Y + P  EHY+C
Sbjct: 430 FEALQTFKELIRTGLPPDRITLAGVLLACSFGGFISEGMTVFSSMEERYGVKPSNEHYAC 489

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
            VDL  +AG L+EA+ + E MP+E    +W SIL  C+ HGD  L  +VAER++EL+P++
Sbjct: 490 FVDLLCQAGRLDEALYVAESMPYEPVSLIWESILHACLIHGDLKLSERVAERLMELEPQS 549

Query: 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +  Y+ L+ +F   G+WE    ++  M+   V K+ GCSW
Sbjct: 550 SLPYLVLARMFEIRGQWEGVVRVKKAMKRGKVEKVIGCSW 589



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 137/308 (44%), Gaps = 44/308 (14%)

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           H++ R  +    S  + ++  C SL  L   +  H    KVG+     + +  LD YS+ 
Sbjct: 9   HRVSRTSL----SYYSYLIDHCFSLKSLSFARITHAQLIKVGLNRHTFLGNRCLDLYSQF 64

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           G  +DA K+F ++   + +  N  +        +  A  +F  MP + ++SWNSMI G +
Sbjct: 65  GNVNDALKVFDDISSKNIVSWNICLKGLLKFDNLSLACSVFDDMPERDVVSWNSMISGYA 124

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-DQ 404
             G    AL+ F  M KL +R  +F+ + ++S    +     G+++   +   GL + + 
Sbjct: 125 SRGYFDCALETFWEMQKLGVRPSEFTYSILMSVVFGVRH---GKEIHGSIVRSGLGALNV 181

Query: 405 IISTSLVDFY-------------------------------CKCGYDALAL--FNEMRNT 431
           ++  SL+D Y                               C+ GY  LAL  F  MR+ 
Sbjct: 182 VLGNSLIDMYGKFSSLDYALGVFLTMEELDVISWNSLISVCCQSGYPELALDKFCIMRSL 241

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           G  P   + + ++++C +   +++G++ F   +K  +  +  I   S  +DLF++   L 
Sbjct: 242 GYSPDEFSVSVVITSCLNLRNLEKGKQIFALCVKVGFLCNTIIS--SATIDLFSKCNRLE 299

Query: 491 EAVNLIEQ 498
           ++V L E+
Sbjct: 300 DSVRLFEE 307


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 191/618 (30%), Positives = 293/618 (47%), Gaps = 112/618 (18%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T  D L  LL+ C +  S+   +Q+H   +   I        N LL  ++   +  +A L
Sbjct: 29  TLTDKLLSLLKQCTSTKSL---QQIHTQMIINAIHK-----PNFLLHRFIDLKDFNNASL 80

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHK-----EKSLQLFNVMPQKNDFSWNMLISGFAKAD 117
           LF ++P  N +++N MI G      K     E   Q+ +   + N+F++  +    A A+
Sbjct: 81  LFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVF--IACAN 138

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L  L +G+  HS +L +GL  D  +  SL+ +Y +                         
Sbjct: 139 LLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSR------------------------- 173

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                 CG++  ARRVFD  ++   V WNSMISGY       +A+ LF +MR  G   D 
Sbjct: 174 ------CGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDE 227

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            TL S+L AC  LG L  G  + G   +  +  +  V SAL+  Y K             
Sbjct: 228 MTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGK------------- 274

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                             CG +  A+ +F  M  K +++WN+MI G +QNG   EA+ LF
Sbjct: 275 ------------------CGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILF 316

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M +  +  DK +L  V+SACA+I +L+ G+ +    +  GL +D  +ST+L+D Y KC
Sbjct: 317 SGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKC 376

Query: 418 G---------------------------------YDALALFNEMRNTG--VKPTIITFTA 442
           G                                  ++L+LF  M   G  V+P  I+F  
Sbjct: 377 GSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIG 436

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H GLV EG++ FD M   + + P+IEH+SCMVDL ARAG ++EA + IE+MP +
Sbjct: 437 VLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEK 496

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
            D  +  ++L  C    +  +  +V   ++E++P N+  YI  S IFA    W+ S+ +R
Sbjct: 497 PDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMR 556

Query: 563 DIMREKHVGKLPGCSWAD 580
            +MR++ V K PGCSW +
Sbjct: 557 VLMRQRGVTKTPGCSWIE 574


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 181/608 (29%), Positives = 285/608 (46%), Gaps = 103/608 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +  T   +  GK++H   +++G LNS + +   L+ M +RCG+   A   F  +  R
Sbjct: 235 LLDAFTTPSMLDEGKRIHKLTVEEG-LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR 293

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +   +NA+I    + GH  ++ + +  M       N  ++  +++  + +   ALE GK 
Sbjct: 294 DVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSK--ALEAGKL 351

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IHSHI  +G   D  +G+                               ALIS YA CG 
Sbjct: 352 IHSHISEDGHSSDVQIGN-------------------------------ALISMYARCGD 380

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  AR +F        + WN++I+GY    +  EA+ L+ +M+  GV     T   +LSA
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSA 440

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C++      GK +H    + G+  +  +A+AL++ Y +                      
Sbjct: 441 CANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRR---------------------- 478

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG + +A+++F     + +ISWNSMI G +Q+GS   A  LF  M   +L 
Sbjct: 479 ---------CGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE 529

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  + ASV+S C N  +LELG+Q+  R+T  GL  D  +  +L++ Y +CG        
Sbjct: 530 PDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNV 589

Query: 419 -------------------------YDALALFNEMRNTGVKPTI-ITFTAILSACDHCGL 452
                                      A+ LF +M+N G +P    TFT+ILSAC+H GL
Sbjct: 590 FHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGL 649

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V EG + F +M+ +Y + P IEHY C+V L  RA    EA  LI QMPF  D  +W ++L
Sbjct: 650 VLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLL 709

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  HG+  L    A   ++L+  N   YI LS+++A +G W+  + IR +M  + + K
Sbjct: 710 GACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRK 769

Query: 573 LPGCSWAD 580
            PG SW +
Sbjct: 770 EPGRSWIE 777



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 145/575 (25%), Positives = 266/575 (46%), Gaps = 109/575 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R  Y+A LLQ+C     +   K++H   ++ G+    + ++N L+ MY++C +  DA  +
Sbjct: 27  RATYVA-LLQNCTRKRLLPEAKRIHAQMVEAGV-GPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSW-NMLISGFAKADL 118
           F EMPRR+  SWN++I  + + G K+K+ QLF  M       N  ++ ++L + ++ A+ 
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE- 143

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             LE GK+IHS I+  G   D  + +SL+++YGKCGD                       
Sbjct: 144 --LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD----------------------- 178

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                   +  AR+VF   +    V +N+M+  Y       E L LF +M   G+  D  
Sbjct: 179 --------LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKV 230

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T  ++L A ++   L+ GK++H    + G+  D+ V +AL                    
Sbjct: 231 TYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTAL-------------------- 270

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                      +T+   CG ++ AK  F+ + ++ ++ +N++I  L+Q+G  +EA + + 
Sbjct: 271 -----------VTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M    + +++ +  S+++AC+   +LE G+ + + ++  G  SD  I  +L+  Y +CG
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCG 379

Query: 419 ---------------------------------YDALALFNEMRNTGVKPTIITFTAILS 445
                                             +A+ L+ +M++ GVKP  +TF  +LS
Sbjct: 380 DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC +     +G+   + +  +  I       + +++++ R G L EA N+ E      DV
Sbjct: 440 ACANSSAYADGKMIHEDI-LRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DV 497

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMI--ELDPEN 538
             W+S++ G   HG      K+ + M   EL+P+N
Sbjct: 498 ISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 186/406 (45%), Gaps = 14/406 (3%)

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           PD F  + LI+ Y  C  + DA +VF        + WNS+IS Y       +A  LF +M
Sbjct: 60  PDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM 119

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
           +  G + +  T  S+L+AC S   LE+GK++H    K G   D  V ++LL  Y K G  
Sbjct: 120 QNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDL 179

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
             A ++F+ +   D +  NTM+ +Y+    +++   +F  M ++ +       + L    
Sbjct: 180 PRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAF 239

Query: 349 SPIEALDLFCNMNKLD----LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
           +    LD    ++KL     L  D     ++++ C     ++  +Q F  +     D D 
Sbjct: 240 TTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIA----DRDV 295

Query: 405 IISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
           ++  +L+    + G+  +A   +  MR+ GV     T+ +IL+AC     ++ G+     
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH 355

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           +    H   +++  + ++ ++AR G L +A  L   MP + D+  W++I+ G     D+G
Sbjct: 356 ISEDGH-SSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRG 413

Query: 523 LGRKVAERM-IELDPENACAYIQLSSIFATSGEWEKSSLI-RDIMR 566
              ++ ++M  E        ++ L S  A S  +    +I  DI+R
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR 459



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 130/317 (41%), Gaps = 66/317 (20%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D +T  ++L  C+    L   K++H    + GV  D+ +++ L++ Y K     DA ++F
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            E+   D I  N++I+ Y+  G  + A  +F  M N   I                    
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIP------------------- 126

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
                       +K +  S+++AC + + LE G+++ +++   G   D  +  SL+  Y 
Sbjct: 127 ------------NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYG 174

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                  + L LF +M + G+ P  +T+  
Sbjct: 175 KCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYIN 234

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L A     ++ EG++    +  +  ++ +I   + +V +  R G ++ A    + +  +
Sbjct: 235 LLDAFTTPSMLDEGKR-IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIA-D 292

Query: 503 ADVGMWSSILRGCVAHG 519
            DV ++++++     HG
Sbjct: 293 RDVVVYNALIAALAQHG 309



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 25/178 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L  C    ++ +GKQ+H    + G L   + + N L+ MY+RCG+  DA  +F  +
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESG-LQLDVNLGNALINMYIRCGSLQDARNVFHSL 593

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE--YGK 125
             R+  SW AMI G    G   K+++LF          W M   GF   D +        
Sbjct: 594 QHRDVMSWTAMIGGCADQGEDMKAIELF----------WQMQNEGFRPPDGSTFTSILSA 643

Query: 126 QIHSHILVNGLDFDSVLGSS------------LVNLYGKCGDFNSANQVLNMMKEPDD 171
             H+ +++ G    S + S             LV L G+   F  A  ++N M  P D
Sbjct: 644 CNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPD 701


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 178/620 (28%), Positives = 291/620 (46%), Gaps = 113/620 (18%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +   LLQ C    S    + +H H +K G  ++   + + L+ +Y +CGN  DA  +F+ 
Sbjct: 66  FYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFF-VMSFLVNVYAKCGNMEDARRVFEN 124

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYG 124
           MPRRN  +W  ++ GF++    + ++ +F  M     +     +S    A   L +L+ G
Sbjct: 125 MPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLG 184

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
            Q H++I+   LDFD+ +GS+L +LY KC                               
Sbjct: 185 DQFHAYIIKYHLDFDTSVGSALCSLYSKC------------------------------- 213

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G++ DA + F R  + + + W S +S    N    + L LF +M    +  +  TL S L
Sbjct: 214 GRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSAL 273

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S C  +  LE G QV     K G   ++ V ++LL  Y K G                  
Sbjct: 274 SQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGF----------------- 316

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS-------------QNGSPI 351
                         I +A   F  M + S+++WN+MI G +             Q GS  
Sbjct: 317 --------------IVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGS-- 360

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           EAL +F  +N+  ++ D F+L+SV+S C+ + ++E GEQ+ A+    G  SD I+STSL+
Sbjct: 361 EALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLI 420

Query: 412 DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
             Y KCG                                   AL +F +M   GV+P  +
Sbjct: 421 SMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTV 480

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TF  +LSAC H G+V +   +F+ M+ +Y I P ++HY CMVD+F R G L +A+N I++
Sbjct: 481 TFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKK 540

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           M +E    +WS+ + GC +HG+  LG   +E+++ L P++   Y+ L +++ ++  ++  
Sbjct: 541 MNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDPETYVLLLNMYLSADRFDDV 600

Query: 559 SLIRDIMREKHVGKLPGCSW 578
           S +R +M  + VGKL   SW
Sbjct: 601 SRVRKMMEVEKVGKLKDWSW 620


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 178/573 (31%), Positives = 276/573 (48%), Gaps = 97/573 (16%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L+  Y  CG+   A   FD +  ++  SW  M+  + +    + SLQLF  M    
Sbjct: 78  VGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVG 137

Query: 103 DFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
               +   +G  KA   L A   GK +H  +L    + D  +G  L++LY K GD     
Sbjct: 138 FNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGD----- 192

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
                                      ND  RVF+       + W+ MIS Y  +N+  E
Sbjct: 193 --------------------------ANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSRE 226

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           A+ LF +MRR  VL +  T ASVL +C+S+  L+ GKQVH H  KVG+  +V V++AL+D
Sbjct: 227 AVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMD 286

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K G   ++ KLF EL   + +  NTM                               
Sbjct: 287 VYAKCGRLDNSMKLFMELPNRNEVTWNTM------------------------------- 315

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           IVG  Q+G   +AL L+ NM +  ++  + + +SV+ ACA+++++ELG Q+ +       
Sbjct: 316 IVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIY 375

Query: 401 DSDQIISTSLVDFYCKCGY---------------------------------DALALFNE 427
           D D ++  +L+D Y KCG                                  +AL  F  
Sbjct: 376 DKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQM 435

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M+ T   P  +TF +ILSAC + GL+  GQ +F +M   Y I+P +EHY+CMV L  R+G
Sbjct: 436 MQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSG 495

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
            L++AV LIE++P E +V +W ++L  CV H D  LG   A++++++DP++   ++ LS+
Sbjct: 496 HLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSN 555

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           I+A +  W   + +R  M+ K V K PG SW +
Sbjct: 556 IYARTRRWNSVASVRKFMKNKGVKKEPGLSWIE 588



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 220/494 (44%), Gaps = 73/494 (14%)

Query: 98  MPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG--KCGD 155
           MP +N  S+  LI G+ ++    L+    + S +   G + +  + ++++ L    +C +
Sbjct: 1   MPDRNTVSFVTLIQGYVQS--FQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAE 58

Query: 156 FNSANQ--VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
              +    +  +  E + F  +ALI  YA CG +N AR+ FD       V W  M++ Y 
Sbjct: 59  LAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYA 118

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
            N+   ++L LF +MR  G   +  T A VL AC  L     GK VHG   K     D+ 
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
           V   LLD Y+K G  +D  ++F E+  +D I                             
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEEMPKHDVI----------------------------- 209

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
              W+ MI   +Q+    EA++LF  M +  +  ++F+ ASV+ +CA+I +L+LG+QV  
Sbjct: 210 --PWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHC 267

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCGY---------------------------------D 420
            V  +GLD +  +S +L+D Y KCG                                   
Sbjct: 268 HVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDK 327

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           AL+L+  M    V+ + +T++++L AC     ++ G +   ++  +   D ++   + ++
Sbjct: 328 ALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ-IHSLSLKTIYDKDVVVGNALI 386

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD-PENA 539
           D++A+ G +  A  L+  M  E D   W++++ G   HG  G   K  + M E +   N 
Sbjct: 387 DMYAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNK 445

Query: 540 CAYIQLSSIFATSG 553
             ++ + S  + +G
Sbjct: 446 LTFVSILSACSNAG 459



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 207/447 (46%), Gaps = 75/447 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C    +  VGK +H   LK       L +   LL +Y + G+  D L +F+EM
Sbjct: 145 FAGVLKACIGLEAFSVGKSVHGCVLKT-CYEMDLYVGVGLLDLYTKFGDANDVLRVFEEM 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
           P+ +   W+ MI  + +     ++++LF  M +     N F++  ++   + A +  L+ 
Sbjct: 204 PKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQ--SCASIENLQL 261

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H H+L  GLD +  + ++L+++Y KC                              
Sbjct: 262 GKQVHCHVLKVGLDGNVFVSNALMDVYAKC------------------------------ 291

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G+++++ ++F    + + V WN+MI GY+ + +  +AL L+  M    V     T +SV
Sbjct: 292 -GRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSV 350

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L AC+SL  +E G Q+H  + K     DV+V +AL+D Y+K G   +A  +F  L   D 
Sbjct: 351 LRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDE 410

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           I  N MI+ YS  G                       +VG        EAL  F  M + 
Sbjct: 411 ISWNAMISGYSMHG-----------------------LVG--------EALKAFQMMQET 439

Query: 364 DLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGY--D 420
           +   +K +  S++SAC+N   L++G+  F + V   G++      T +V    + G+   
Sbjct: 440 ECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDK 499

Query: 421 ALALFNEMRNTGVKPTIITFTAILSAC 447
           A+ L  E+    ++P +  + A+L AC
Sbjct: 500 AVKLIEEI---PLEPNVKVWRALLGAC 523


>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 647

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 191/625 (30%), Positives = 291/625 (46%), Gaps = 79/625 (12%)

Query: 26  QLHLHFLKKGILNSTLPI--------ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA 77
           Q+H  F+  G+L              A RLL   +   + +  LL     P  N FS N 
Sbjct: 22  QIHGQFIASGLLADAFAASRLLLFTSATRLLPFPI---HHSFRLLRLVRCP--NAFSCNT 76

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           +++  +  G     L L+  +P   D ++   I   A A    +  G+Q+ SH + +G  
Sbjct: 77  LLKAALLAGMPHLCLPLYTSLPASPD-TYTHPILAAACAARRDVSEGRQVQSHAIRHGFG 135

Query: 138 FDSVLGSSLVNLYGKCG-------------------------------DFNSANQVLNMM 166
            D  L ++L+++Y  CG                               D + A  V   M
Sbjct: 136 DDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVFARM 195

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
            + +   +S+++S +   G + +AR VFD         W +MIS +  N+   EAL +F 
Sbjct: 196 PKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHMFS 255

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            MRR     D + + SV++AC+    + +G+  HG   + G+   + + + L+  YS   
Sbjct: 256 CMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSCCL 315

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
               A +LF      D    N+MI  Y   G +E+A  +F  MP+K  +SW++MI G  Q
Sbjct: 316 DVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQ 375

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           N     AL +F NM    +R D+ ++ SVISAC N+S+LE G+ V   V         ++
Sbjct: 376 NNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVL 435

Query: 407 STSLVDFYCKCGY--DALALFNEMRNTGVK------------------------------ 434
            TSL+D Y KCGY   A+ +FN M   G                                
Sbjct: 436 GTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASST 495

Query: 435 --PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
             P  ITFT +LSAC H GLV+EG+ +F  M+ +Y I P I HY CMVDL  RAG + EA
Sbjct: 496 AIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEA 555

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
            +LIE MP   DV  W ++L  C  HG+  +G +V  +++ LDP +      LS+I+A  
Sbjct: 556 EDLIESMPMSPDVPAWGALLGACWKHGENEVGERVGRKLVNLDPRHDGFQTMLSNIYAKE 615

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCS 577
           G W+  + +RD M+++HV K+ G S
Sbjct: 616 GMWQSVNDLRDSMKQRHVPKVSGYS 640



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 135/562 (24%), Positives = 237/562 (42%), Gaps = 115/562 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L  +C     +  G+Q+  H ++ G     L + N L+ MY  CG   DA  +FD  P  
Sbjct: 109 LAAACAARRDVSEGRQVQSHAIRHG-FGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVW 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND--------------------------- 103
           +  SWN ++  ++  G  ++++ +F  MP++N                            
Sbjct: 168 DAVSWNTILAAYVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAE 227

Query: 104 ----FSWNMLISGFAKADL---------------------------AALEYGKQIHSHIL 132
               F+W  +IS F + D+                           AA    + I +  L
Sbjct: 228 CRDIFTWTAMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGEL 287

Query: 133 VNGLDFDSVLGS------SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
            +GL   + L S       L+++Y  C D  +A ++ +     D F  +++I+GY   G 
Sbjct: 288 CHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGH 347

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +A  +F    D  +V W++MISG + NN+ + AL +F  MR  GV  D  T+ SV+SA
Sbjct: 348 VENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISA 407

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C++L  LE GK VH +  +      +++ ++L+D Y K                      
Sbjct: 408 CTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMK---------------------- 445

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG +E A  +F  M  K    WN++IVGL+ NG   ++L++F  M      
Sbjct: 446 ---------CGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTA 496

Query: 367 M-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKCGY- 419
           + ++ +   V+SAC +   +E G   F  +        QI+        +VD   + GY 
Sbjct: 497 IPNEITFTGVLSACRHAGLVEEGRHFFKLMQ----HKYQIVPNIRHYGCMVDLLGRAGYV 552

Query: 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
            +A  L   M    + P +  + A+L AC   G  + G++     +   ++DP  + +  
Sbjct: 553 KEAEDLIESM---PMSPDVPAWGALLGACWKHGENEVGER---VGRKLVNLDPRHDGFQT 606

Query: 479 MV-DLFARAGCLNEAVNLIEQM 499
           M+ +++A+ G      +L + M
Sbjct: 607 MLSNIYAKEGMWQSVNDLRDSM 628



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 123/284 (43%), Gaps = 64/284 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C     I  G+  H   ++ G L S L I N L+ MY  C +   A  LFD  
Sbjct: 269 MVSVVAACAQSEVIRNGELCHGLVIRAG-LCSLLNIQNVLIHMYSCCLDVVAARRLFDSG 327

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
              + FSWN+MI G++K GH E ++ LF+ MP K++ SW+ +ISG  +            
Sbjct: 328 DCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFD 387

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                 +L+ALE GK +H ++  N      VLG+SL+++Y KCG
Sbjct: 388 NMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCG 447

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
              +A  V N+M+E    C +A+I G A  G +  +  +F     +S+ + N +      
Sbjct: 448 YLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEI------ 501

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
                                   T   VLSAC   G +E G+ 
Sbjct: 502 ------------------------TFTGVLSACRHAGLVEEGRH 521


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 174/599 (29%), Positives = 303/599 (50%), Gaps = 68/599 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  +++ G+   A  LFD MP R   S+  M++  MK G   ++++L+   P  +   +
Sbjct: 155 MVSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 214

Query: 107 NMLISGFAKADL---AALEYGKQIHSHILVNGL-------------DFD---SVLG---- 143
              ISGF + +L   A   + K +   +  NG+             +F    S++G    
Sbjct: 215 TATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIK 274

Query: 144 -----------SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
                      +SL+ LY + GD  +A +V + M   D    +AL+  Y+  G ++ ARR
Sbjct: 275 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARR 334

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           V D   + + V W ++I+ +       EA+ L+ +M  +G   + S  +SVLSAC+SL  
Sbjct: 335 VLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLED 394

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L  G ++H  + K+G   +V V+ +L+D Y K     DA  +F  L   + +  N++++ 
Sbjct: 395 LRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSG 454

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           YS  G++ +A ++F+ MP ++L SWN++I G +QN   ++AL  F  M        + + 
Sbjct: 455 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITF 514

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
           +SV+ ACAN+ SL  G+   A+   +G++    I T+L D Y K G              
Sbjct: 515 SSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPE 574

Query: 419 -------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                               +++ LF +M  TG+ P   TF A+L AC H GLV++   +
Sbjct: 575 RNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHY 634

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           FD M+    I P+ +HY+CMVD+ ARAG L EA  L+ + P +++   W+++L  C  + 
Sbjct: 635 FDKMQ-ALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYR 693

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           ++ +  + A+R+ EL  +N   Y+ LS+++A+ G W+ ++ IR +M+   + K  GCSW
Sbjct: 694 NEEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSW 752



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 211/450 (46%), Gaps = 65/450 (14%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           +K     S++ + N L+ +Y+R G+   A  +FDEM  ++  SW A+++ + + G  + +
Sbjct: 273 IKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGA 332

Query: 92  LQLFNVMPQKNDFSWNMLISGFAK---------------------------------ADL 118
            ++ + MP++N+ SW  LI+   +                                 A L
Sbjct: 333 RRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASL 392

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G +IH+  L  G   +  +  SL+++Y KC     A  + + + + +  C ++L+
Sbjct: 393 EDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLV 452

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           SGY+  GKM +A  +F +    +   WN++ISGY  N +  +AL  F+ M  +G +    
Sbjct: 453 SGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEI 512

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T +SVL AC++L  L  GK  H    K+G+ + + + +AL D Y+K              
Sbjct: 513 TFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAK-------------- 558

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF 
Sbjct: 559 -----------------SGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFE 601

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           +M    +  ++ +  +++ AC++   +E     F ++  +G+   +   T +VD   + G
Sbjct: 602 DMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFDKMQALGISPKEKHYTCMVDVLARAG 661

Query: 419 YDALALFNEMRNTGVKPTIITFTAILSACD 448
             A A    M+ T  K    ++ A+LSAC+
Sbjct: 662 RLAEAEALLMK-TPSKSEANSWAALLSACN 690



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 90/419 (21%), Positives = 174/419 (41%), Gaps = 68/419 (16%)

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT---ILLNTMITVYSS 315
           +H HA + GV  D  VAS LL TY+     ++  + F +    D       + M++ +  
Sbjct: 102 LHAHAVRSGVAADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDFMVSEHVK 161

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL------------------- 356
            G I  A+ +F  MP+++++S+ +M+  L + G   EA++L                   
Sbjct: 162 AGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISGF 221

Query: 357 ------------FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL---- 400
                       F  M    +R +  ++  +I AC       L       ++I+GL    
Sbjct: 222 VRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLA------LSIVGLAIKS 275

Query: 401 ---DSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
              +S   +  SL+  Y + G  A A  +F+EM    VK  ++++TA+L      G +  
Sbjct: 276 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEM---DVK-DVVSWTALLDVYSESGDLDG 331

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSIL 512
            ++  DAM  +  +      +  ++    + G   EAV L  QM  +    ++  +SS+L
Sbjct: 332 ARRVLDAMPERNEVS-----WGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVL 386

Query: 513 RGCVAHGDKGLGRKVAERMIEL-DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
             C +  D   G ++  R +++    N      L  ++    +   +  I D + +K++ 
Sbjct: 387 SACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNI- 445

Query: 572 KLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQHQSADFCDYIHGFDQARLPLSSKRSF 630
            +   S   G ++N   ++ M+L    F ++     A +   I G+ Q R  + + +SF
Sbjct: 446 -VCWNSLVSGYSYNGKMVEAMYL----FKKMPARNLASWNTIISGYAQNRQFVDALKSF 499


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 184/610 (30%), Positives = 289/610 (47%), Gaps = 107/610 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C +   I +G QLH   +  G L+    I N LL MY +CG   DA+ LF  M R 
Sbjct: 241 VLSVCASKLLIDLGVQLHGLVVVSG-LDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRA 299

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  +WN MI G+++ G  E+SL  F       V+P    FS   L+   +K     LEY 
Sbjct: 300 DTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFS--SLLPSVSK--FENLEYC 355

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +QIH +I+ + +                                 D F  SALI  Y  C
Sbjct: 356 RQIHCYIMRHSISL-------------------------------DIFLTSALIDAYFKC 384

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             ++ A+++F +      V++ +MISGY+ N  + +AL +F  + +  +  +  TL S+L
Sbjct: 385 RGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSIL 444

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
                L  L+ G+++HG   K G  +   +  A++D Y+K                    
Sbjct: 445 PVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAK-------------------- 484

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      CGR+  A  IF  +  + ++SWNSMI   +Q+ +P  A+D+F  M    
Sbjct: 485 -----------CGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSG 533

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           +  D  S+++ +SACAN+ S   G+ +   +    L  D    ++L+D Y KCG      
Sbjct: 534 ICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAM 593

Query: 419 ---------------------------YDALALFNEM-RNTGVKPTIITFTAILSACDHC 450
                                       D+L LF+EM   +G +P  ITF  I+S C H 
Sbjct: 594 NVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHV 653

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G V EG ++F +M   Y I P+ EHY+C+VDLF RAG L+EA   ++ MPF  D G+W +
Sbjct: 654 GDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGT 713

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L     H +  L +  + R+++LDP N+  Y+ +S+  A +GEWE  + +R +M+E+ V
Sbjct: 714 LLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREV 773

Query: 571 GKLPGCSWAD 580
            K+PG SW +
Sbjct: 774 QKIPGYSWIE 783



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 122/522 (23%), Positives = 233/522 (44%), Gaps = 56/522 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LLQ C+    +  GKQ+H   +   I   +     R+L MY  CG+ ++   +F  +
Sbjct: 34  LSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSY-TDERILGMYAMCGSFSNCGKMFYRL 92

Query: 68  PRR--NCFSWNAMIEGFMKLGHKEKSLQL------FNVMPQKNDFSWNMLISGFAKADLA 119
             R  +   WN++I  F+++G   ++L        F V P  + F          KA +A
Sbjct: 93  DSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPC------LVKACVA 146

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
              +           G++F S                   + V ++  + ++F  S+LI 
Sbjct: 147 LKNF----------KGIEFLS-------------------DTVSSLGMDCNEFVASSLIK 177

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            Y   GK++ A ++FDR      V+WN M++GY         +  F  MR + +  +A T
Sbjct: 178 AYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVT 237

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
              VLS C+S   ++ G Q+HG     G+  +  + ++LL  YSK G   DA KLF  + 
Sbjct: 238 FDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMS 297

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALD 355
             DT+  N MI+ Y   G +E++   F  M +  +    I+++S++  +S+  +      
Sbjct: 298 RADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQ 357

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           + C + +  + +D F  +++I A      + + +++F++   +    D ++ T+++  Y 
Sbjct: 358 IHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSV----DVVVFTAMISGYL 413

Query: 416 KCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
             G   DAL +F  +    + P  IT  +IL        +K G++       +   D   
Sbjct: 414 HNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRE-LHGFIIKKGFDNRC 472

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
                ++D++A+ G +N A  +  ++  + D+  W+S++  C
Sbjct: 473 NIGCAVIDMYAKCGRMNLAYEIFGRLS-KRDIVSWNSMITRC 513


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 185/675 (27%), Positives = 313/675 (46%), Gaps = 144/675 (21%)

Query: 11  LLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L++C  +   + VG ++H   +K G+ +  + I   LL MY + GN +DA  +FD MP 
Sbjct: 106 VLRACAGSREHLSVGGKVHGRIIKGGVDDDAV-IETSLLCMYGQTGNLSDAEKVFDGMPV 164

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGK 125
           R+  +W+ ++   ++ G   K+L++F  M     + +  +   ++ G   A+L  L   +
Sbjct: 165 RDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGC--AELGCLRIAR 222

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H  I     D D  L +SL+ +Y KCGD  S+                          
Sbjct: 223 SVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSS-------------------------- 256

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                 R+F++    ++V W +MIS Y       +AL  F +M ++G+  +  TL SVLS
Sbjct: 257 -----ERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLS 311

Query: 246 ACSSLGFLEHGKQVHGHACK------------------------------VGVIDD--VI 273
           +C  +G +  GK VHG A +                              + V+ D  ++
Sbjct: 312 SCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIV 371

Query: 274 VASALLDTYSKRGMPSDACKLFSEL----------------------------------- 298
             ++L+  Y+ RGM   A  LF ++                                   
Sbjct: 372 AWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHV 431

Query: 299 ---KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
               V D  + N++I +YS  G ++ A  +F  + ++S+++WNSM+ G SQNG+ +EA+ 
Sbjct: 432 IRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAIS 491

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  M    L M++ +  +VI AC++I SLE G+ V  ++ I GL  D    T+L+D Y 
Sbjct: 492 LFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL-KDLFTDTALIDMYA 550

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                   A++ FN+M  +G KP  + F  
Sbjct: 551 KCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMN 610

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H G V+EG+ +F+ MK  + + P  EH++C +DL +R+G L EA   I++MPF 
Sbjct: 611 VLSACGHSGSVEEGKYYFNLMK-SFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFL 669

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
           AD  +W S++ GC  H    + + +   + ++  ++   Y  LS+I+A  GEWE+   +R
Sbjct: 670 ADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLR 729

Query: 563 DIMREKHVGKLPGCS 577
             M+  ++ K+PG S
Sbjct: 730 SAMKSSNLKKVPGYS 744



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 141/595 (23%), Positives = 255/595 (42%), Gaps = 113/595 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILN-STLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           L +SC+   S+ +  QLH H L  G L    LP+  +L++ Y   G+P  + L+F+  P 
Sbjct: 7   LFRSCS---SLRLVSQLHAHLLVTGRLRRDPLPV-TKLIESYAFMGSPDSSRLVFEAFPY 62

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY---GKQ 126
            + F +  +I+  +     + ++ L++ +  +       +     +A   + E+   G +
Sbjct: 63  PDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGK 122

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  I+  G+D D+V+ +SL+ +YG+ G+                               
Sbjct: 123 VHGRIIKGGVDDDAVIETSLLCMYGQTGN------------------------------- 151

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           ++DA +VFD       V W++++S  + N E  +AL +F  M  +GV  DA T+ SV+  
Sbjct: 152 LSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEG 211

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ LG L   + VHG   +                           K+F      D  L 
Sbjct: 212 CAELGCLRIARSVHGQITR---------------------------KMFD----LDETLC 240

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N+++T+YS CG +  ++ IF  +  K+ +SW +MI   ++     +AL  F  M K  + 
Sbjct: 241 NSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIE 300

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSD-QIISTSLVDFYCKCG------- 418
            +  +L SV+S+C  I  +  G+ V        LD + + +S +LV+ Y +CG       
Sbjct: 301 PNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCET 360

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       AL LF +M    +KP   T  + +SAC++ GL
Sbjct: 361 VLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGL 420

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V  G K       +  +  E    S ++D+++++G ++ A  +  Q+   + V  W+S+L
Sbjct: 421 VPLG-KQIHGHVIRTDVSDEFVQNS-LIDMYSKSGSVDSASTVFNQIKHRS-VVTWNSML 477

Query: 513 RGCVAHGDKGLGRKVAERM----IELDPENACAYIQLSSIFAT--SGEWEKSSLI 561
            G   +G+      + + M    +E++     A IQ  S   +   G+W    LI
Sbjct: 478 CGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLI 532


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 291/609 (47%), Gaps = 104/609 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C   +S+ +G+ +H      G     + + + L++ Y   G   DA  LFD MP +
Sbjct: 153 VIKACGGLNSVALGRVVHDKIQFMG-FELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK 211

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
           +   WN M+ G++K G  + +  +F  M +     N  ++  ++S  A   +  + +G Q
Sbjct: 212 DGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIM--INFGSQ 269

Query: 127 IHSHILVNGLDFDSVLGSS--LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +H  ++ +GL+ DS + ++  L+++Y KC D   A ++ +     D    +A+ISGY   
Sbjct: 270 LHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLN 329

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G  N+A  +F          W                 LL  +MR N V     TLASVL
Sbjct: 330 GMNNNALEIFR---------W-----------------LLQERMRANSV-----TLASVL 358

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+ L  L  GK++HGH  K G      V SA++D Y+K G    A + F  +   D +
Sbjct: 359 PACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAV 418

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N+MIT  S  G+ E                               EA+DLF  M    
Sbjct: 419 CWNSMITSCSQNGKPE-------------------------------EAIDLFRQMGMAG 447

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
            + D  S+++ +SACAN+ +L  G+++ A +      SD    ++L+D Y KCG      
Sbjct: 448 TKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLAC 507

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       D+L LF+ M   G++P  +TF AI+SAC H G
Sbjct: 508 RVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAG 567

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V EG  +F  M  +  I   +EHY+CMVDLF RAG LNEA  +I  MPF  D G+W ++
Sbjct: 568 QVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTL 627

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  HG+  L    +  + +LDP+N+  Y+ LS++ A +G+WE    IR +M+E+ V 
Sbjct: 628 LGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQ 687

Query: 572 KLPGCSWAD 580
           K+PGCSW D
Sbjct: 688 KVPGCSWID 696



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 134/557 (24%), Positives = 232/557 (41%), Gaps = 106/557 (19%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D+    L  +LQ+C     +  G+Q H   L  GI  + + +  +LL MY+ CG   DA 
Sbjct: 43  DSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGI-LGTKLLGMYVLCGAFLDAK 101

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAK 115
            +F ++       WN MI GF  +G  + +L  +        +P K  F + +   G   
Sbjct: 102 NIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACG--- 158

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
             L ++  G+ +H  I   G + D  +GSSL+                            
Sbjct: 159 -GLNSVALGRVVHDKIQFMGFELDVFVGSSLIKF-------------------------- 191

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
                Y+  G ++DAR +FDR      V+WN M++GY+ N +   A  +F +MRR     
Sbjct: 192 -----YSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNP 246

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           ++ T A VLS C+S   +  G Q+HG     G+  D  VA+                   
Sbjct: 247 NSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTF----------------- 289

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                        +I +Y  C  +E A+ IF       ++   +MI G   NG    AL+
Sbjct: 290 ------------ALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALE 337

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           +F  + +  +R +  +LASV+ ACA +++L LG+++   +   G      + ++++D Y 
Sbjct: 338 IFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYA 397

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +A+ LF +M   G K   ++ +A
Sbjct: 398 KCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISA 457

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
            LSAC +   +  G++   A   +     ++   S ++D++++ G L+ A  + + M  +
Sbjct: 458 ALSACANLPALHYGKE-IHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEK 516

Query: 503 ADVGMWSSILRGCVAHG 519
            +V  W+SI+     HG
Sbjct: 517 NEVS-WNSIIAAYGNHG 532



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 11/170 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++  L +C    ++H GK++H  F+ +G   S L   + L+ MY +CGN   A  +FD M
Sbjct: 455 ISAALSACANLPALHYGKEIHA-FMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTM 513

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLIS--GFAKADLAAL 121
             +N  SWN++I  +   G  + SL LF+ M     Q +  ++  +IS  G A      +
Sbjct: 514 EEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGI 573

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPD 170
            Y + +   +   G+       + +V+L+G+ G  N A  ++N M   PD
Sbjct: 574 HYFRCMTEEL---GIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPD 620


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 197/623 (31%), Positives = 300/623 (48%), Gaps = 122/623 (19%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T  + L  L++ C + + +   KQ+H   L    +NS +P  N LL   +   +   A L
Sbjct: 31  TLTEKLLSLIKQCKSKNLL---KQIHAQML----INS-IPKPNFLLSKIIDLKDLAYASL 82

Query: 63  LFDEMPRRNCFSWNAMIEGF----------MKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           +F+++ + N +++N M+ G           ++L +K KSL L     + N+F++  L   
Sbjct: 83  VFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGL-----KANNFTYPFLF-- 135

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
            A  ++  L +GK  H  +   GLD D  +  SL+ +Y                      
Sbjct: 136 IACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMY---------------------- 173

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
                    A CG+M  AR+VFD   D   V WNSMISGY       EA+ LF +MR  G
Sbjct: 174 ---------ARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEG 224

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
              D  TL SVL AC  LG L  G+ V G   +  +  +  + SAL+D Y K G      
Sbjct: 225 FEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCG------ 278

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
            L S  +V+D+                         MPNK +++WN++I G +QNG+  E
Sbjct: 279 DLISARRVFDS-------------------------MPNKDVVTWNAIITGYAQNGASNE 313

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           A+ LF  M +     D+ ++  V+SAC+ I +L+LG+ V    +  GL  D  ++++L+D
Sbjct: 314 AIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALID 373

Query: 413 FYCKCG---------------------------------YDALALFNEMR--NTGVKPTI 437
            Y KCG                                  +AL+LF  M   N  V+P  
Sbjct: 374 MYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPND 433

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           ITF  +LSAC H GLV EG++ F++M   + + P++EHYSCMVDL ARAG L EA +LI+
Sbjct: 434 ITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIK 493

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
           +MP + D  +  S+L  C    +  +G +V +  +E++  N+  Y+  S I+A    W+ 
Sbjct: 494 KMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDD 553

Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
           S+ +R +MR+  V K PGCSW D
Sbjct: 554 SAKMRVLMRQCGVSKTPGCSWID 576


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 179/595 (30%), Positives = 289/595 (48%), Gaps = 102/595 (17%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G  +H    K G  +S   +   L+  Y  CG    A  +FD +  ++  SW  M+  +
Sbjct: 163 LGFSVHACVYKLG-FDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 83  MKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
           ++    E+SL+LF+ M     + N+F++  ++   A   L     GK +H          
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLK--ACVGLEVFNVGKAVHGCAFKTSYLE 279

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           +  +G  L++LY K GD                               ++DA +VF+   
Sbjct: 280 ELFVGVELIDLYIKSGD-------------------------------VDDALQVFEEMP 308

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
               + W+ MI+ Y  + +  EA+ +F +MRR  VL +  TLAS+L AC+SL  L+ G Q
Sbjct: 309 KDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQ 368

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +H H  KVG+  +V V++AL+D Y+K                               CGR
Sbjct: 369 IHCHVVKVGLDMNVFVSNALMDMYAK-------------------------------CGR 397

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +E++  +F   PN + +SWN++IVG  Q G+  +AL LF +M +  ++  + + +SV+ A
Sbjct: 398 MENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRA 457

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------- 419
           CA I++LE G Q+ +       D + ++  +L+D Y KCG                    
Sbjct: 458 CAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSW 517

Query: 420 --------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         +AL  F  M  T  KP  +TF  ILSAC + GL+  GQ +F +M  
Sbjct: 518 NAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVE 577

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
           +Y I+P  EHY+CMV L  R+G L++A  L+ ++PFE  V +W ++L  CV H D  LGR
Sbjct: 578 EYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGR 637

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             A+R++E++PE+   ++ LS+I+A +  W   + IR  M+ K + K PG SW +
Sbjct: 638 ISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIE 692



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 156/563 (27%), Positives = 251/563 (44%), Gaps = 106/563 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANR-LLQMYMRCGNPTDALLLFDEMPR 69
           LLQSC  +     GK LH   +KKG  N     AN  LL  Y++  +  DA  LFDEMP 
Sbjct: 50  LLQSCIRNGDCATGKYLHCEIIKKG--NCLDLFANNILLNFYVKYDSLPDAAKLFDEMPD 107

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGK 125
           RN  S+  +I+G+ +     +++ LF+ +     + N F ++ ++     A+ A L  G 
Sbjct: 108 RNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKL--GF 165

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H+ +   G D D+ +G++L++ Y  C                          GYA C 
Sbjct: 166 SVHACVYKLGFDSDAFVGTALIDCYSVC--------------------------GYAEC- 198

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
               AR+VFD       V W  M++ Y+ N    E+L LF +MR  G   +  T ASVL 
Sbjct: 199 ----ARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLK 254

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC  L     GK VHG A K   ++++ V   L+D Y K G   DA ++F E+   D I 
Sbjct: 255 ACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVI- 313

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                          W+ MI   +Q+    EA+++FC M +  +
Sbjct: 314 ------------------------------PWSFMIARYAQSEQSEEAIEMFCRMRRGLV 343

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             ++F+LAS++ ACA++  L+LG Q+   V  +GLD +  +S +L+D Y KCG       
Sbjct: 344 LPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQ 403

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       AL LF +M    V+ T +T++++L AC     
Sbjct: 404 LFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAA 463

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           ++ G +   ++  +   D      + ++D++A+ G + +A  L+  M  E D   W++++
Sbjct: 464 LEPGSQ-IHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDA-RLVFDMLREHDQVSWNAMI 521

Query: 513 RGCVAHGDKGLGRKVAERMIELD 535
            G   HG  G   K  E M+E +
Sbjct: 522 SGYSVHGLYGEALKTFESMLETE 544



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 38/254 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LLQ+C +   + +G Q+H H +K G L+  + ++N L+ MY +CG   ++L LF E 
Sbjct: 350 LASLLQACASLVDLQLGNQIHCHVVKVG-LDMNVFVSNALMDMYAKCGRMENSLQLFSES 408

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
           P     SWN +I G+++ G+ EK+L LF  M     Q  + +++ ++   A A +AALE 
Sbjct: 409 PNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLR--ACAGIAALEP 466

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G QIHS  +    D ++V+G++L+++Y KCG+   A  V +M++E D    +A+ISGY+ 
Sbjct: 467 GSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSV 526

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G   +A + F+   +T                                   D  T   +
Sbjct: 527 HGLYGEALKTFESMLETE-------------------------------CKPDKVTFVGI 555

Query: 244 LSACSSLGFLEHGK 257
           LSACS+ G L+ G+
Sbjct: 556 LSACSNAGLLDRGQ 569


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 182/646 (28%), Positives = 305/646 (47%), Gaps = 141/646 (21%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--- 99
           +A+ L++ Y+  G       LFD + +++C  WN M+ G+ K G  +  ++ F+VM    
Sbjct: 175 VASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQ 234

Query: 100 -QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
              N  +++ ++S  A   L  ++ G Q+H  ++V+G+DF+  + +SL+++Y K      
Sbjct: 235 ISPNAVTFDCVLSVCASKLL--IDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSK------ 286

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
                                    CG+ +DA ++F   +   +V WN MISGY+ +   
Sbjct: 287 -------------------------CGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLM 321

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK----------VGV 268
            E+L  F++M  +GVL DA T +S+L + S    LE+ KQ+H +  +            +
Sbjct: 322 EESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSAL 381

Query: 269 ID---------------------DVIVASALLDTYSKRGMPSDACKLF------------ 295
           ID                     DV+V +A++  Y   G+  D+ ++F            
Sbjct: 382 IDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNE 441

Query: 296 ----SELKVYDTILL-----------------------NTMITVYSSCGRIEDAKHIFRT 328
               S L V   +L                          +I +Y+ CGR+  A  IF  
Sbjct: 442 ITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFER 501

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           +  + ++SWNSMI   +Q+ +P  A+D+F  M    +  D  S+++ +SACAN+ S   G
Sbjct: 502 LSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFG 561

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------------ 418
           + +   +    L SD    ++L+D Y KCG                              
Sbjct: 562 KAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNH 621

Query: 419 ---YDALALFNEM-RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
               D+L LF+EM   +G++P  ITF  I+S+C H G V EG ++F +M   Y I P+ E
Sbjct: 622 GKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQE 681

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           HY+C+VDLF RAG L EA   ++ MPF  D G+W ++L  C  H +  L    + ++++L
Sbjct: 682 HYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDL 741

Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           DP N+  Y+ +S+  A + EWE  + +R +M+E+ V K+PG SW +
Sbjct: 742 DPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIE 787



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 126/538 (23%), Positives = 238/538 (44%), Gaps = 56/538 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-- 65
           L+ LLQ+C+  + +  GKQ+H   +   I   +     R+L MY  CG+ +D   +F   
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSY-TDERILGMYAMCGSFSDCGKMFYRL 96

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQL------FNVMPQKNDFSWNMLISGFAKADLA 119
           ++ R +   WN++I  F++ G   ++L        F V P  + F          KA +A
Sbjct: 97  DLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPC------LVKACVA 150

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
              +           G+DF   L  ++ +L   C                ++F  S+LI 
Sbjct: 151 LKNF----------KGIDF---LSDTVSSLGMDC----------------NEFVASSLIK 181

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            Y   GK++   ++FDR      V+WN M++GY         +  F  MR + +  +A T
Sbjct: 182 AYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVT 241

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
              VLS C+S   ++ G Q+HG     GV  +  + ++LL  YSK G   DA KLF  + 
Sbjct: 242 FDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMS 301

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALD 355
             DT+  N MI+ Y   G +E++   F  M +  +    I+++S++  +S+  +      
Sbjct: 302 RADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQ 361

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           + C + +  + +D F  +++I A      + + + +F++   +    D ++ T+++  Y 
Sbjct: 362 IHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSV----DVVVFTAMISGYL 417

Query: 416 KCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
             G   D+L +F  +    + P  IT  +IL        +K G++       +   D   
Sbjct: 418 HNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRE-LHGFIIKKGFDNRC 476

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
                ++D++A+ G +N A  + E++  + D+  W+S++  C    +      +  +M
Sbjct: 477 NIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDNPSAAIDIFRQM 533



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 49/289 (16%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ +G++LH   +KKG  N    I   ++ MY +CG    A  +F+ + +R+  SWN+MI
Sbjct: 456 ALKLGRELHGFIIKKGFDNRC-NIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMI 514

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIHSHILVNGLD 137
               +  +   ++ +F  M         + IS    A A+L +  +GK IH  ++ + L 
Sbjct: 515 TRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLA 574

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            D    S+L+++Y KCG+  +A  V   MKE +    +++I+   N GK+ D        
Sbjct: 575 SDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKD-------- 626

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHG 256
                                  +L LFH+M  ++G+  D  T   ++S+C  +G ++ G
Sbjct: 627 -----------------------SLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEG 663

Query: 257 --------------KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
                          Q   +AC V +       +   +T      P DA
Sbjct: 664 VRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDA 712



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S   GK +H  F+ K  L S +   + L+ MY +CGN   A+ +F  M  +N
Sbjct: 549 LSACANLPSESFGKAIH-GFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKN 607

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALEYGKQ 126
             SWN++I      G  + SL LF+ M +K     +  ++  +IS  +   +  ++ G +
Sbjct: 608 IVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIIS--SCCHVGDVDEGVR 665

Query: 127 IHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
               +  + G+       + +V+L+G+ G    A + +  M  P D
Sbjct: 666 FFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPD 711


>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 166/509 (32%), Positives = 266/509 (52%), Gaps = 38/509 (7%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y + G    A  +FDE+P R+  SW  MI G+ ++G  E ++++F  M +    
Sbjct: 10  NTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMFVAMMKDKVL 69

Query: 105 SWNMLISG-FAK-ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 162
                ++  FA  A L AL+ GK+IHS ++  GL     + +SL+N+Y K GD   A  V
Sbjct: 70  PTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKAGDSVMAKIV 129

Query: 163 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 222
            + M+       + +IS + + G+ + A   F++ ++   V WNSMI+GY  +  D EAL
Sbjct: 130 FDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKEAL 189

Query: 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
            LF +M  + +  D  TLAS+LSAC+++  L  GKQ+H +  +       +V +AL+  Y
Sbjct: 190 ELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALISMY 249

Query: 283 SKRGMPSDACKLFSELKVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
           +K G    A  +  +  + D   I    ++  Y   G I  A+HIF ++ +  +++W +M
Sbjct: 250 AKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTAM 309

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           IVG  QNG   +A++LF  M K   R + F+LA+++S  +N++SL  G+Q+ A     G 
Sbjct: 310 IVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVASLNHGKQIHASAIRSGE 369

Query: 401 DSDQIISTSLVDFYCKC----------------------------------GYDALALFN 426
           +    +  +L+  Y K                                   G +++ LF 
Sbjct: 370 NLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQESIELFE 429

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +M   G+KP  IT+  +LSAC H GLV++G+ +F+ M   + I+P + HY+CM+DLF RA
Sbjct: 430 KMLALGIKPDHITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTLSHYACMIDLFGRA 489

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G L EA + IE MP E DV  W S+L  C
Sbjct: 490 GLLQEAFSFIENMPIEPDVIAWGSLLSSC 518



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 231/476 (48%), Gaps = 68/476 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +  SC    ++ +GK++H   +K G L+  +P+AN LL MY + G+   A ++FD M
Sbjct: 75  VTNVFASCAALGALDIGKKIHSFVIKLG-LSGCVPVANSLLNMYAKAGDSVMAKIVFDRM 133

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
             R+  SWN MI   M  G  + +L  F  M +++  +WN +I+G+++            
Sbjct: 134 RLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKEALELFS 193

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                A++  L  GKQIHS+I+    D   V+ ++L+++Y K G
Sbjct: 194 RMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALISMYAKTG 253

Query: 155 DFNSANQVLNM--MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
               A  ++    + + +    +AL+ GY   G +  AR +FD   D+  V W +MI GY
Sbjct: 254 GVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGY 313

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
           + N  + +A+ LF  M + G   ++ TLA++LS  S++  L HGKQ+H  A + G    V
Sbjct: 314 VQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVASLNHGKQIHASAIRSGENLSV 373

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            V +AL+  Y+K G  +DA ++F+ ++                               NK
Sbjct: 374 SVGNALITMYAKAGSITDAQQVFNLIQ------------------------------RNK 403

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
             +SW SMI+ L Q+G   E+++LF  M  L ++ D  +   V+SAC ++  +E G   F
Sbjct: 404 DTVSWTSMIIALGQHGLGQESIELFEKMLALGIKPDHITYVGVLSACTHVGLVEQGRGYF 463

Query: 393 ARVTII-GLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447
             +T I  ++        ++D + + G    A F+ + N  ++P +I + ++LS+C
Sbjct: 464 NLMTSIHKIEPTLSHYACMIDLFGRAGLLQEA-FSFIENMPIEPDVIAWGSLLSSC 518



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 181/339 (53%), Gaps = 7/339 (2%)

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
           M     F  + +++GYA  G +  A  VFD   D  SV W +MI GY        A+ +F
Sbjct: 1   MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
             M ++ VL    T+ +V ++C++LG L+ GK++H    K+G+   V VA++LL+ Y+K 
Sbjct: 61  VAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKA 120

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           G    A  +F  +++      N MI+++   GR + A   F  M  + +++WNSMI G S
Sbjct: 121 GDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYS 180

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           Q+G   EAL+LF  M +  L+ D+F+LAS++SACANI +L LG+Q+ + +     D   +
Sbjct: 181 QHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGV 240

Query: 406 ISTSLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAILSACDHCGLVKEGQKWFDAMK 464
           +  +L+  Y K G   +A  + +  +G+    +I FTA+L      G +   +  FD++K
Sbjct: 241 VQNALISMYAKTGGVEIAQ-SIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLK 299

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
                D ++  ++ M+  + + G  ++A+ L   M  E 
Sbjct: 300 -----DSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEG 333



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 159/335 (47%), Gaps = 33/335 (9%)

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           + V  T   NT++T Y+  G +  A  +F  +P++  +SW +MIVG +Q G    A+ +F
Sbjct: 1   MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M K  +   +F++ +V ++CA + +L++G+++ + V  +GL     ++ SL++ Y K 
Sbjct: 61  VAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKA 120

Query: 418 GYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
           G   +A  +F+ MR      +I ++  ++S   H G        F+ M      + ++  
Sbjct: 121 GDSVMAKIVFDRMR----LRSISSWNIMISLHMHGGRADLALAQFEQMS-----ERDVVT 171

Query: 476 YSCMVDLFARAGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           ++ M+  +++ G   EA+ L  +M     + D    +SIL  C    +  LG+++   +I
Sbjct: 172 WNSMITGYSQHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYII 231

Query: 533 ELDPE-NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDT 591
             + + +      L S++A +G  E   + + I+ +  +  L      + IAF    LD 
Sbjct: 232 RTEFDISGVVQNALISMYAKTGGVE---IAQSIVEQSGISDL------NVIAFTA-LLDG 281

Query: 592 MFLQLAN-------FDEIKQHQSADFCDYIHGFDQ 619
            +++L N       FD +K      +   I G+ Q
Sbjct: 282 -YVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQ 315


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 178/596 (29%), Positives = 291/596 (48%), Gaps = 101/596 (16%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G+Q+H   +K G   S     + LL MY +C    DA  +F  MP RN  SWNA+I+GF
Sbjct: 120 LGQQVHSLIVKIGYEQSVYA-GSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGF 178

Query: 83  MKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
           +++G ++ +  L + M ++     D ++  L++         L    Q+H  I+ +GL+F
Sbjct: 179 VQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDGDKFYKLT--MQLHCKIIKHGLEF 236

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
            + L                                +A ++ Y+ CG + DA+RVFD   
Sbjct: 237 YNAL-------------------------------CNATLTAYSECGLLEDAKRVFDGAV 265

Query: 199 DTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
            T   V WNSM+  Y+ +++D +A  LF +M+  G   D  T   V+SAC +     +GK
Sbjct: 266 GTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGK 325

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
             H    K G+ + V + +AL+  Y K    S                            
Sbjct: 326 SFHALVIKRGLEESVTICNALITMYLKLNNKS---------------------------- 357

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            +E A ++F +M +K  +SWNS++ G SQ G   +AL LF +M      +D ++ ++V+ 
Sbjct: 358 -MEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLR 416

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------ 419
           +C++++ L+LG+Q+       G DS+  +++SL+  Y KCG                   
Sbjct: 417 SCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSIT 476

Query: 420 ---------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                           AL LF+ MR   VK   +TF A+L+AC H GLV++G+    +M+
Sbjct: 477 WNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQGRCVLKSME 536

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             Y I P +EHY+C VDLF RAG L EA  LI+ MPF+ +  +  ++L  C A G+  L 
Sbjct: 537 SDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVLKTLLGACRACGNIELA 596

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +VA +++E++PE  C Y+ LS+++     W+  + +  +MRE+ V K+PG SW +
Sbjct: 597 AQVASQLLEVEPEEHCTYVILSNMYGHLKRWDDKASVTRLMRERKVKKVPGWSWIE 652



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 129/566 (22%), Positives = 229/566 (40%), Gaps = 113/566 (19%)

Query: 16  NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC--GNPTDALLLFDEMPRRNCF 73
           ++ H+++     H    K GI+ S + +AN +L  Y +C  G+   A  LFDEMP ++  
Sbjct: 10  SSRHALYNVFLTHCQAFKSGII-SHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTV 68

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHS 129
           +WN MI G+++ G+   + +    M     Q + +++  ++ G A A     + G+Q+HS
Sbjct: 69  TWNTMITGYVESGNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHA--CRHDLGQQVHS 126

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            I+  G +     GS+L+++Y K                               C ++ D
Sbjct: 127 LIVKIGYEQSVYAGSALLDMYAK-------------------------------CERVED 155

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A  VF      + V WN++I G++   +   A  L   M++ GV  +  T A +L+    
Sbjct: 156 AYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDG 215

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
             F +   Q+H                               CK+      +   L N  
Sbjct: 216 DKFYKLTMQLH-------------------------------CKIIKHGLEFYNALCNAT 244

Query: 310 ITVYSSCGRIEDAKHIFR-TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +T YS CG +EDAK +F   +  + L++WNSM+V    +    +A +LF  M       D
Sbjct: 245 LTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPD 304

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK------------ 416
            ++   VISAC   +    G+   A V   GL+    I  +L+  Y K            
Sbjct: 305 IYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNL 364

Query: 417 ----------------CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                            G+       DAL LF  MR++  +     ++A+L +C    ++
Sbjct: 365 FHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAIL 424

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           + GQ+    +  +   D      S ++ ++++ G + +A    E    E+ +  W+SI+ 
Sbjct: 425 QLGQQ-IHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSI-TWNSIMF 482

Query: 514 GCVAHGDKGLGRKV----AERMIELD 535
               HG   +   +     ER ++LD
Sbjct: 483 AYAQHGQGDVALDLFSIMREREVKLD 508



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 42/323 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT--DALLLFDEMP 68
           ++ +C      + GK  H   +K+G L  ++ I N L+ MY++  N +   AL LF  M 
Sbjct: 311 VISACFAAAHKNYGKSFHALVIKRG-LEESVTICNALITMYLKLNNKSMEAALNLFHSMK 369

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYG 124
            ++  SWN+++ GF ++G  E +L+LF  M     + +D++++ ++   + +DLA L+ G
Sbjct: 370 SKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLR--SCSDLAILQLG 427

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +QIH   +  G D +  + SSL+ +Y K                               C
Sbjct: 428 QQIHLLTVKTGFDSNDFVASSLIFMYSK-------------------------------C 456

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G + DA + F+ TT  SS+ WNS++  Y  + +   AL LF  MR   V  D  T  +VL
Sbjct: 457 GIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVL 516

Query: 245 SACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-D 302
           +ACS +G +E G+ V        G+   +   +  +D + + G   +A  L   +    +
Sbjct: 517 TACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPN 576

Query: 303 TILLNTMITVYSSCGRIEDAKHI 325
            ++L T++    +CG IE A  +
Sbjct: 577 AMVLKTLLGACRACGNIELAAQV 599


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  281 bits (720), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 180/593 (30%), Positives = 283/593 (47%), Gaps = 99/593 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK++H   L++ I +S + +A  L+ MY +CG    A  LF  +  R+  +W+A+I   +
Sbjct: 348 GKEIHGCALQQRI-DSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALV 406

Query: 84  KLGHKEKSLQLFNVMP-QKNDFSWNMLISGF-AKADLAALEYGKQIHSHILVNGLDFDSV 141
           + G+ E++L LF  M  QK   +   L+S   A ADL+ L+ GK IH   +   +D D  
Sbjct: 407 QTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLS 466

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
            G+                               AL+S YA CG    A   F+R +   
Sbjct: 467 TGT-------------------------------ALVSMYAKCGFFTAALTTFNRMSSRD 495

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            V WNS+I+GY    +   A+ +F+K+R + +  DA T+  V+ AC+ L  L+ G  +HG
Sbjct: 496 IVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHG 555

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
              K+G   D  V +AL+D Y+K                               CG +  
Sbjct: 556 LIVKLGFESDCHVKNALIDMYAK-------------------------------CGSLPS 584

Query: 322 AKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
           A+ +F +T   K  ++WN +I    QNG   EA+  F  M   +   +  +  SV+ A A
Sbjct: 585 AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------- 419
            +++   G    A +  +G  S+ ++  SL+D Y KCG                      
Sbjct: 645 YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNA 704

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                        A+ALF+ M+ + V+   ++F ++LSAC H GLV+EG+K F +M  +Y
Sbjct: 705 MLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKY 764

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
           HI P++EHY+CMVDL  RAG  +E +  I+ MP E D G+W ++L  C  H +  LG   
Sbjct: 765 HIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVA 824

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            + +++L+P N   ++ LSSI+A SG W  +   R  M +  + K PGCSW +
Sbjct: 825 LDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVE 877



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 143/553 (25%), Positives = 242/553 (43%), Gaps = 119/553 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++  G   H    ++G L   + I   L+ MY + G+   A  +FD+MP+R
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRG-LERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKR 193

Query: 71  NCFSWNAMIEGFMKLGHKE---------KSLQLFNVMPQKNDFSWNMLISGFAKADLAAL 121
           +  +WNAMI G   L   E         +S+QL  V P  +  S   L  G  K  L+ +
Sbjct: 194 DVVAWNAMIAG---LSQSEDPCEAVDFFRSMQLVGVEP--SSVSLLNLFPGICK--LSNI 246

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           E  + IH ++     DF S + + L++LY KC                            
Sbjct: 247 ELCRSIHGYVFRR--DFSSAVSNGLIDLYSKC---------------------------- 276

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTL 240
              G ++ ARRVFD+  D   V W +M++GY  N    E L LF KM+   V +   S +
Sbjct: 277 ---GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAV 333

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           ++ L+A  ++  LE GK++HG A +  +  D++VA+ L+  Y+K                
Sbjct: 334 SAFLAAAETID-LEKGKEIHGCALQQRIDSDILVATPLMVMYAK---------------- 376

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CG  E AK +F  +  + L++W+++I  L Q G P EAL LF  M
Sbjct: 377 ---------------CGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEM 421

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
               ++ ++ +L S++ ACA++S L+LG+ +        +DSD    T+LV  Y KCG  
Sbjct: 422 QNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFF 481

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                          Y+A+ +F ++R + + P   T   ++ AC
Sbjct: 482 TAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPAC 541

Query: 448 DHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
                + +G       +K  +  D  ++  + ++D++A+ G L  A  L  +  F  D  
Sbjct: 542 ALLNDLDQGTCIHGLIVKLGFESDCHVK--NALIDMYAKCGSLPSAEFLFNKTDFTKDEV 599

Query: 507 MWSSILRGCVAHG 519
            W+ I+   + +G
Sbjct: 600 TWNVIIAAYMQNG 612



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/513 (23%), Positives = 216/513 (42%), Gaps = 100/513 (19%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           ++N L+ +Y +CG+   A  +FD+M  ++  SW  M+ G+   G   + L+LF+ M   N
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 103 -DFSWNMLISGF-AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
              +    +S F A A+   LE GK+IH   L   +D D ++ + L+ +Y KCG+   A 
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           Q+   ++  D                                V W+++I+  +      E
Sbjct: 385 QLFWGLQGRD-------------------------------LVAWSAIIAALVQTGYPEE 413

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL LF +M+   +  +  TL S+L AC+ L  L+ GK +H    K  +  D+   +AL+ 
Sbjct: 414 ALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVS 473

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K G  + A   F+ +   D +                               +WNS+
Sbjct: 474 MYAKCGFFTAALTTFNRMSSRDIV-------------------------------TWNSL 502

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           I G +Q G P  A+D+F  +    +  D  ++  V+ ACA ++ L+ G  +   +  +G 
Sbjct: 503 INGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGF 562

Query: 401 DSDQIISTSLVDFYCKCG----------------------------------YDALALFN 426
           +SD  +  +L+D Y KCG                                   +A++ F+
Sbjct: 563 ESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFH 622

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +MR     P  +TF ++L A  +    +EG   F A   Q          + ++D++A+ 
Sbjct: 623 QMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKC 681

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           G L  +  L  +M  + D   W+++L G   HG
Sbjct: 682 GQLXYSEKLFNEMDHK-DTVSWNAMLSGYAVHG 713



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 130/559 (23%), Positives = 232/559 (41%), Gaps = 116/559 (20%)

Query: 3   TRIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILN--STLPIANRLLQMYMRCGNPT 58
           T  +YL   RLL SC   + +    Q+H   +  G  +  S   + N L  ++ +C    
Sbjct: 28  TYTNYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITHLIN-LYSLFHKCDL-- 81

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFA 114
            A  +FD  P  +   WN+MI  + +     ++L+++  M +K    + +++  ++    
Sbjct: 82  -ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT 140

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            A    L+ G   H  I   GL+ D  +G+ LV++Y K                      
Sbjct: 141 GA--LNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKM--------------------- 177

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
                     G +  AR VFD+      V WN+MI+G   + +  EA+  F  M+  GV 
Sbjct: 178 ----------GDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVE 227

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
             + +L ++      L  +E  + +HG+  +                             
Sbjct: 228 PSSVSLLNLFPGICKLSNIELCRSIHGYVFR----------------------------- 258

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
               + + + + N +I +YS CG ++ A+ +F  M ++  +SW +M+ G + NG  +E L
Sbjct: 259 ----RDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVL 314

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +LF  M   ++R++K S  S   A A    LE G+++        +DSD +++T L+  Y
Sbjct: 315 ELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMY 374

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            KCG                                  +AL+LF EM+N  +KP  +T  
Sbjct: 375 AKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLM 434

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           +IL AC    L+K G K       +  +D ++   + +V ++A+ G    A+    +M  
Sbjct: 435 SILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS- 492

Query: 502 EADVGMWSSILRGCVAHGD 520
             D+  W+S++ G    GD
Sbjct: 493 SRDIVTWNSLINGYAQIGD 511



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 212/487 (43%), Gaps = 76/487 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C     + +GK +H  F  K  ++S L     L+ MY +CG  T AL  F+ M
Sbjct: 433 LMSILPACADLSLLKLGKSIHC-FTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNV--MPQKNDFSWNMLISGFAKADLAALEYGK 125
             R+  +WN++I G+ ++G    ++ +F    +   N  +  M+    A A L  L+ G 
Sbjct: 492 SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH  I+  G + D  + ++L+++Y KCG   SA  + N                     
Sbjct: 552 CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKT------------------- 592

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                    D T D   V WN +I+ Y+ N    EA+  FH+MR      ++ T  SVL 
Sbjct: 593 ---------DFTKD--EVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A + L     G   H    ++G + + +V ++L+D Y+K G    + KLF+E+   DT+ 
Sbjct: 642 AAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTV- 700

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                         SWN+M+ G + +G    A+ LF  M +  +
Sbjct: 701 ------------------------------SWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGYDALAL 424
           ++D  S  SV+SAC +   +E G ++F  ++    +  D      +VD   + G     L
Sbjct: 731 QIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAG-----L 785

Query: 425 FNE----MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           F+E    ++   V+P    + A+L +C     VK G+   D +      +P   H+  + 
Sbjct: 786 FDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNP--AHFVVLS 843

Query: 481 DLFARAG 487
            ++A++G
Sbjct: 844 SIYAQSG 850


>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
          Length = 800

 Score =  281 bits (720), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 218/754 (28%), Positives = 361/754 (47%), Gaps = 149/754 (19%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           H   +K G   +++  AN ++  Y +CG    A  +FDE  +R+  SWN MI G +  G+
Sbjct: 22  HCLAIKSGT-TASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGN 80

Query: 88  KEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLG 143
            E +L+    M +     + +S+  ++ G A   +  +E G+Q+HS I+  G + +   G
Sbjct: 81  FETALEFLKSMKRYGFAVDGYSFGSILKGVAC--VGYVEVGQQVHSMIVKIGYEGNVFAG 138

Query: 144 SSLVNL-------------------------------YGKCGDFNSANQVLNMMK----E 168
           S+L+++                               Y   GD  +A  +L+ M+    E
Sbjct: 139 SALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVE 198

Query: 169 PDDFCLS-----------------------------------ALISGYANCGKMNDARRV 193
            DD   +                                   A+I+ Y+ CG + DA RV
Sbjct: 199 IDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERV 258

Query: 194 FDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           FD   +T   V WNSM++ Y+ NN++ EA  LF +M+  G   D  T  SV+SA      
Sbjct: 259 FDGAIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAH 318

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
              GK +HG   K G+   V ++++L+  Y K                            
Sbjct: 319 QGQGKSLHGLVIKRGLEFLVPISNSLIAMYLK---------------------------- 350

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
            S    +++A +IF ++ NK  +SWNS++ G SQ+G   +AL  F NM    + +D ++ 
Sbjct: 351 -SHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAF 409

Query: 373 ASVISACANISSLELGEQVF--------ARVTIIGLDSDQIIS-TSLVDFYCKCGYD--A 421
           ++V+ +C+++++L+LG+QV         AR +      D  I+  SL+  Y + G    A
Sbjct: 410 SAVLRSCSDLATLQLGQQVHVLCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIA 469

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           L LF  M++  VK   ITF A+L+AC H GLV+EG  +  +M+  Y I P +EHY+CM+D
Sbjct: 470 LDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMID 529

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
           L  RAG L+EA  LIE MPFE D  +W ++L  C   GD  L  +VA  ++EL+PE  C 
Sbjct: 530 LLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCT 589

Query: 542 YIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW------------ADGIAFNCWFL 589
           Y+ LSS+F     W + + I+ +M+E+ V K+PG SW             D    NC   
Sbjct: 590 YVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVHSFNAEDRSHPNC--- 646

Query: 590 DTMFLQLANF-DEIKQHQSADFCDYIHGFDQARLPLSSKRSFVLGYLLSTLSLKVVY--S 646
           + ++L+L +  +EI++       DY+    +    LS    ++    +S LS+ +VY  +
Sbjct: 647 EEIYLRLGDLMEEIRR------LDYVAN-SEIMSYLSGSSPYIKSGAVSVLSV-LVYKDT 698

Query: 647 NLCSSLVVPTRNELAYLLIRMVYGNILTIALLLL 680
           ++C+S+     ++LA  ++ ++ G  + +A  +L
Sbjct: 699 DICTSV-----SDLAPSVLALLQGKAVEVAKFML 727



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 41/208 (19%)

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           SS   L      H  A K G    +  A+ ++  Y+K G    A K+F E    D +  N
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWN 69

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           TMI    + G  E                                AL+   +M +    +
Sbjct: 70  TMIAGXVNFGNFET-------------------------------ALEFLKSMKRYGFAV 98

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALF 425
           D +S  S++   A +  +E+G+QV + +  IG + +    ++L+D Y KC    DA  +F
Sbjct: 99  DGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVEDAFEVF 158

Query: 426 NE--MRNTGVKPTIITFTAILSACDHCG 451
               +RN+      +T+ A++S   H G
Sbjct: 159 KSINIRNS------VTWNALISGYAHVG 180


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  281 bits (720), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 175/608 (28%), Positives = 299/608 (49%), Gaps = 105/608 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    S  +G+Q+    +K   ++++L +AN  L M+ + G   DA  LF+ +  +
Sbjct: 307 VLGACAHLDSHCLGRQVQCVTIKN-CMDASLFVANATLDMHSKFGAIDDAKTLFNLITYK 365

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWNA++ G       E+++ +   M       ++ S+  +I+  A +++ A E GKQ
Sbjct: 366 DTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVIN--ACSNIRATETGKQ 423

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH   + + +  +  +GSSL++ Y K GD  S                            
Sbjct: 424 IHCLAMKHSICSNHAVGSSLIDFYSKHGDVESC--------------------------- 456

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
               R+V  +   +S V  N +I+G + NN + EA+ LF ++ R+G+   + T +S+LS 
Sbjct: 457 ----RKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSG 512

Query: 247 CSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           C+ L     GKQVH +  K G + DD  V  +L+ TY K  MP DA KL  E        
Sbjct: 513 CTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIE-------- 564

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                                  MP+ K+L+ W +++ G +QNG   ++L  F  M   D
Sbjct: 565 -----------------------MPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYD 601

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           +  D+ + AS++ AC+ +++L  G+++   +   G  S +  +++++D Y KCG      
Sbjct: 602 VHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSF 661

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF +M+++ +K   +TF  +L AC H 
Sbjct: 662 EAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHA 721

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GL+ EG+ +FD+M   Y I P ++HY+C +DL  R G L EA  +I ++PF  D  +W++
Sbjct: 722 GLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPDGVIWAT 781

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
            L  C  H D+  G   A+ ++EL+P+N+  Y+ LS+++A +G W ++ + R+ MREK  
Sbjct: 782 YLAACRMHKDEERGEIAAKELVELEPQNSSTYVLLSNMYAAAGNWVEAKMAREAMREKGA 841

Query: 571 GKLPGCSW 578
            K PGCSW
Sbjct: 842 TKFPGCSW 849



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 155/626 (24%), Positives = 250/626 (39%), Gaps = 188/626 (30%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L +C+   ++  GKQ H    K+G L S    A  L+ MY RCG   DA  +F  +
Sbjct: 34  LAATLSACSRLGALVSGKQAHCDAEKRG-LGSGAFCAAALVNMYARCGRVGDARRVFGGI 92

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
              +   W +MI G+ + G  ++++ LF  M +                           
Sbjct: 93  SLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRLEDAR 152

Query: 101 ---------KNDFSWNMLISGFAK----------------------------------AD 117
                     +  +WN +ISG+A+                                  A+
Sbjct: 153 TLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAAN 212

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
             A   G+Q+H+  + +GLD +  +GSSL+NLY K                         
Sbjct: 213 ATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAK------------------------- 247

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                 CG + DA  VFD + + + VMWN+M++G + N    EA+ +F  M+R G+  D 
Sbjct: 248 ------CGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADE 301

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T  SVL AC+ L     G+QV     K  +   + VA+A LD +SK G   DA  LF+ 
Sbjct: 302 FTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNL 361

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           +   DT                               +SWN+++VGL+ N    EA+ + 
Sbjct: 362 ITYKDT-------------------------------VSWNALLVGLTHNEEDEEAIHML 390

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             MN   +  D+ S A+VI+AC+NI + E G+Q+        + S+  + +SL+DFY K 
Sbjct: 391 KGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKH 450

Query: 418 G---------------------------------YDALALFNEMRNTGVKPTIITFTAIL 444
           G                                  +A+ LF ++   G+KP+  TF++IL
Sbjct: 451 GDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSIL 510

Query: 445 SACD-----------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           S C            HC  +K G            ++ +      +V  + +A    +A 
Sbjct: 511 SGCTGLLSSIIGKQVHCYTLKSG-----------FLNDDTSVGVSLVGTYLKARMPEDAN 559

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHG 519
            L+ +MP   ++  W++I+ G   +G
Sbjct: 560 KLLIEMPDHKNLVEWTAIVSGYAQNG 585



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/556 (22%), Positives = 241/556 (43%), Gaps = 106/556 (19%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           TR  + + L  + N    I  G+Q+H   ++ G L++ + + + L+ +Y +CG   DA+L
Sbjct: 199 TRSTFASMLSAAANATAFIE-GRQVHAAAVRHG-LDANVFVGSSLINLYAKCGCIGDAIL 256

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADL 118
           +FD    +N   WNAM+ G ++  ++ +++Q+F  M     + ++F++  ++   A  D 
Sbjct: 257 VFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDS 316

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G+Q+    + N +D    + ++ ++++ K G  + A  + N++   D        
Sbjct: 317 HCL--GRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKD-------- 366

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                                  +V WN+++ G   N ED EA+ +   M  +GV  D  
Sbjct: 367 -----------------------TVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEV 403

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           + A+V++ACS++   E GKQ+H  A K  +  +  V S+L+D YSK              
Sbjct: 404 SFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKH------------- 450

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             G +E  + +   +   S++  N +I GL QN    EA+DLF 
Sbjct: 451 ------------------GDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQ 492

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKC 417
            + +  L+   F+ +S++S C  + S  +G+QV       G L+ D  +  SLV  Y K 
Sbjct: 493 QVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKA 552

Query: 418 ----------------------------------GYDALALFNEMRNTGVKPTIITFTAI 443
                                              Y +L  F  MR+  V P  +TF +I
Sbjct: 553 RMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASI 612

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L AC     + +G++    +  +          S ++D++++ G +  +    +++  + 
Sbjct: 613 LKACSEMTALSDGKE-IHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQ 671

Query: 504 DVGMWSSILRGCVAHG 519
           D+ +W+S++ G   +G
Sbjct: 672 DITLWNSMILGFAKNG 687



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 215/501 (42%), Gaps = 78/501 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++ +C+   +   GKQ+H   +K  I  S   + + L+  Y + G+      +  ++
Sbjct: 405 FATVINACSNIRATETGKQIHCLAMKHSIC-SNHAVGSSLIDFYSKHGDVESCRKVLAQV 463

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
              +    N +I G ++   +++++ LF  +     + + F+++ ++SG     L +   
Sbjct: 464 DASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGC--TGLLSSII 521

Query: 124 GKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           GKQ+H + L +G L+ D+ +G SLV  Y K      AN++L  M  PD   L        
Sbjct: 522 GKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEM--PDHKNL-------- 571

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
                               V W +++SGY  N    ++LL F +MR   V  D  T AS
Sbjct: 572 --------------------VEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFAS 611

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L ACS +  L  GK++HG   K G        SA++D YSK G    + + F ELK   
Sbjct: 612 ILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQ 671

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            I L                              WNSMI+G ++NG   EAL LF  M  
Sbjct: 672 DITL------------------------------WNSMILGFAKNGYADEALLLFQKMQD 701

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGY-- 419
             ++ D+ +   V+ ACA+   +  G   F  ++ + G+          +D   + G+  
Sbjct: 702 SQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQ 761

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSC 478
           +A  + NE+     +P  + +   L+AC    + K+ ++   A K    ++P+    Y  
Sbjct: 762 EAQEVINELP---FRPDGVIWATYLAACR---MHKDEERGEIAAKELVELEPQNSSTYVL 815

Query: 479 MVDLFARAGCLNEAVNLIEQM 499
           + +++A AG   EA    E M
Sbjct: 816 LSNMYAAAGNWVEAKMAREAM 836



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 43/305 (14%)

Query: 219 TEALLLFHKMRR----NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           T  L  F + RR     GV  D   LA+ LSACS LG L  GKQ H  A K G+      
Sbjct: 9   TAVLDAFVRARRCSAGGGVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFC 68

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           A+AL++ Y++                               CGR+ DA+ +F  +     
Sbjct: 69  AAALVNMYAR-------------------------------CGRVGDARRVFGGISLPDT 97

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
           + W SMI G  + G   EA+ LF  M K+    D+ +  +V+ A   +  LE    +  R
Sbjct: 98  VCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRLEDARTLLHR 157

Query: 395 VTIIGLDSDQIISTSLVDFYCK---CGYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
           +      S  +   +++  Y +     ++   L+ +MR  G+ PT  TF ++LSA  +  
Sbjct: 158 MPA---PSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANAT 214

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
              EG++   A   ++ +D  +   S +++L+A+ GC+ +A+ L+     E +V MW+++
Sbjct: 215 AFIEGRQ-VHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAI-LVFDCSGEKNVVMWNAM 272

Query: 512 LRGCV 516
           L G V
Sbjct: 273 LNGLV 277


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 190/642 (29%), Positives = 315/642 (49%), Gaps = 75/642 (11%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  +  ++ LL SC    S+  G+QLH H +  G     + +  +L+  Y       DA 
Sbjct: 171 DLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPI-LVPKLVTFYSAFNLLVDAH 229

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
           ++ +     + F WN +I  +++ G  +K+L  +  M +K     N       KA  +  
Sbjct: 230 VITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEEL 289

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L +GK++H  I  + + +  ++ ++L+++YGKCG    A  + + + E D    +++IS
Sbjct: 290 DLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMIS 349

Query: 180 GYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
            YA+ G  N+A  +F        + + ++WN++  GY+       AL L  +MR+ G   
Sbjct: 350 VYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHL 409

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D+  L   L ACS +G  + GK++H  A +                         +C  F
Sbjct: 410 DSVALIIGLGACSHIGDAKLGKEIHSFAIR-------------------------SC--F 442

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            E+   DT+  N++IT+YS C  ++ A  +F+ M  KSLISWNS+I G        EA  
Sbjct: 443 GEV---DTVK-NSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASF 498

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII-STSLVDFY 414
           L   M    +  +  ++ASV+  CA +++L+ G++    +T      D ++   +LVD Y
Sbjct: 499 LLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMY 558

Query: 415 CKCG--------YD-------------------------ALALFNEMRNTGVKPTIITFT 441
            + G        +D                         AL LF EM N  +KP  IT  
Sbjct: 559 ARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMI 618

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           A+LSAC H GLV +GQ  F+ M+  Y + P +EH++CM DLF RAG LN+A  +I  MP+
Sbjct: 619 AVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPY 678

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           +    MW++++  C  H +  +G   AE+++E+ PEN   Y+ +++++A +G W K + +
Sbjct: 679 KPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKV 738

Query: 562 RDIMREKHVGKLPGCSWAD-GIAFNCWFLDTMFLQLANFDEI 602
           R  MR+  V K PGC+W D G  F+ + +D      AN DEI
Sbjct: 739 RXFMRDLGVRKAPGCAWVDVGTGFSPFLVDDT--SNANADEI 778


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 183/597 (30%), Positives = 282/597 (47%), Gaps = 100/597 (16%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+ +G+Q+H   LK G L+  L ++N L+ MY +      A  +F+ M  R+  SWN++I
Sbjct: 337 SLALGQQVHCMALKLG-LDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVI 395

Query: 80  EGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
            G  +   + +++ LF  + +   K D      +   A +    L   KQIH H +    
Sbjct: 396 AGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAI---- 451

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
                                  N V       D F  +ALI  Y+    M +A  +F R
Sbjct: 452 ---------------------KTNNV------ADSFVSTALIDAYSRNRCMKEAEVLFGR 484

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             +   V WN+M+SGY  +++  + L LF  M + G   D  TLA+VL  C  L  +  G
Sbjct: 485 N-NFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQG 543

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           KQVH +A K G   D+ V+S +LD Y K                               C
Sbjct: 544 KQVHAYAIKSGYDLDLWVSSGILDMYVK-------------------------------C 572

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G +  A+  F ++P    ++W ++I G  +NG    AL +F  M  + +  D+F++A++ 
Sbjct: 573 GDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLA 632

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
            A + +++LE G Q+ A    +   SD  + TSLVD Y KCG                  
Sbjct: 633 KASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNIT 692

Query: 419 ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                           +AL LF +M + G+KP  +TF  +LSAC H GLV E  K+  +M
Sbjct: 693 AWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSM 752

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
              Y I PEIEHYSC+ D   RAG + EA NLI+ M  EA   M+ ++L  C   GD   
Sbjct: 753 HRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTET 812

Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           G++VA +++EL+P ++ AY+ LS+++A + +W++  L R +M+   V K PG SW +
Sbjct: 813 GKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 869



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 194/459 (42%), Gaps = 89/459 (19%)

Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
           + GKC    +  ++L + + P+ F ++ LIS Y+ CG +  ARRVFD+  +   V WNS+
Sbjct: 63  MLGKC----THARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSI 118

Query: 209 ISGYISNNEDT-----EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
           ++ Y  ++E       EA LLF  +R++ V     TL+ +L  C   G++   +  HG+A
Sbjct: 119 LAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYA 178

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
           CK+G+  D  VA AL++ Y K G   +   LF E+   D +L N M+  Y   G  E+A 
Sbjct: 179 CKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 238

Query: 324 ------HIFRTMPNK--------------------------------SLISWNSMIVGLS 345
                 H     PN+                                 +IS N ++ G  
Sbjct: 239 DLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYL 298

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
             G     L  F +M + DL  D+ +   V++    + SL LG+QV      +GLD    
Sbjct: 299 HAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLT 358

Query: 406 ISTSLVDFYCK---------------------------------CGYDALALFNEMRNTG 432
           +S SL++ YCK                                    +A+ LF ++   G
Sbjct: 359 VSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCG 418

Query: 433 VKPTIITFTAILSACDHC--GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           +KP   T T++L A      GL    Q    A+K     D  +   + ++D ++R  C+ 
Sbjct: 419 LKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVS--TALIDAYSRNRCMK 476

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           EA  L  +  F  D+  W++++ G     D   G K  E
Sbjct: 477 EAEVLFGRNNF--DLVAWNAMMSGYTQSHD---GHKTLE 510



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/568 (22%), Positives = 235/568 (41%), Gaps = 113/568 (19%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK-----LGHKEKSLQLFNV 97
           + N L+ MY +CG+ T A  +FD+MP R+  SWN+++  + +     + + +++  LF +
Sbjct: 83  LVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRI 142

Query: 98  MPQKNDFSWNMLISGFAKADLAA--LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155
           + Q   ++  M +S   K  L +  +   +  H +    GLD D  +  +LVN+Y K G 
Sbjct: 143 LRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGK 202

Query: 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA------------------------- 190
                 +   M   D    + ++  Y   G   +A                         
Sbjct: 203 VKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRI 262

Query: 191 ---------RRVFDRTTDTSSV----MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                     + F+   D S+V      N ++SGY+   + +  L  F  M  + +  D 
Sbjct: 263 SGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQ 322

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T   VL+    L  L  G+QVH  A K+G +D ++  S                     
Sbjct: 323 VTFILVLATAVRLDSLALGQQVHCMALKLG-LDLMLTVS--------------------- 360

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                    N++I +Y    +I  A+ +F  M  + LISWNS+I G++Q+   +EA+ LF
Sbjct: 361 ---------NSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLF 411

Query: 358 CNMNKLDLRMDKFSLASVISACANISS-LELGEQVFARVTIIGLDSDQIISTSLVDFYC- 415
             + +  L+ D +++ SV+ A +++   L L +Q+          +D  +ST+L+D Y  
Sbjct: 412 MQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSR 471

Query: 416 -KC------------------------------GYDALALFNEMRNTGVKPTIITFTAIL 444
            +C                              G+  L LF  M   G +    T   +L
Sbjct: 472 NRCMKEAEVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVL 531

Query: 445 SACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
             C     + +G++    A+K  Y +D  +   S ++D++ + G ++ A    + +P   
Sbjct: 532 KTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPVPD 589

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERM 531
           DV  W++++ GC+ +G++     V  +M
Sbjct: 590 DVA-WTTLISGCIENGEEERALHVFSQM 616



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 149/322 (46%), Gaps = 36/322 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L++C    +I+ GKQ+H + +K G  +  L +++ +L MY++CG+ + A   FD +
Sbjct: 527 LATVLKTCGFLFAINQGKQVHAYAIKSG-YDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 585

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYGK 125
           P  +  +W  +I G ++ G +E++L +F+ M           I+  AKA   L ALE G+
Sbjct: 586 PVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGR 645

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH++ L      D  +G+SLV++Y KCG  +            D +CL           
Sbjct: 646 QIHANALKLNCTSDPFVGTSLVDMYAKCGSID------------DAYCL----------- 682

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                   F R    +   WN+M+ G   + E  EAL LF +M   G+  D  T   VLS
Sbjct: 683 --------FKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLS 734

Query: 246 ACSSLGFL-EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           ACS  G + E  K +       G+  ++   S L D   + G+  +A  L   + +  + 
Sbjct: 735 ACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASA 794

Query: 305 -LLNTMITVYSSCGRIEDAKHI 325
            +  T++      G  E  K +
Sbjct: 795 SMYRTLLAACRVQGDTETGKRV 816


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 188/610 (30%), Positives = 307/610 (50%), Gaps = 81/610 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDALLLFDE 66
           LL +C T  S+ +   +H   +K G+ N+   ++ +L++  +      G P  A+ +F  
Sbjct: 39  LLHNCKTLQSLRI---IHAQMIKIGLHNTNYALS-KLIEFCILSPHFEGLPY-AISVFKT 93

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALE 122
           +   N   WN M  G         +L+L+  M       N +++  ++   AK+   A +
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSK--AFK 151

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+QIH H+L  G D D  + +SL+++Y + G    A++V +     D    +ALI GYA
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           + G + +A+++FD       V WN+MISGY       EAL LF  M +  V  D ST+ +
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           V+SAC+  G +E G+QVH        IDD              G  S+       LK+  
Sbjct: 272 VVSACAQSGSIELGRQVHL------WIDD-------------HGFGSN-------LKI-- 303

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
              +N +I +YS CG +E A  +F  +P K +ISWN++I G +      EAL LF  M +
Sbjct: 304 ---VNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360

Query: 363 LDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                +  ++ S++ ACA++ ++++G    V+    + G+ +   + TSL+D Y KCG  
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 420

Query: 419 -----------------YDALA--------------LFNEMRNTGVKPTIITFTAILSAC 447
                            ++A+               LF+ MR  G++P  ITF  +LSAC
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H G++  G+  F  M   Y + P++EHY CM+DL   +G   EA  +I  M  E D  +
Sbjct: 481 SHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVI 540

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W S+L+ C  HG+  LG   AE +I+++PEN  +Y+ LS+I+A++G W + +  R ++ +
Sbjct: 541 WCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLND 600

Query: 568 KHVGKLPGCS 577
           K + K+PGCS
Sbjct: 601 KGMKKVPGCS 610



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 40/258 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C    SI +G+Q+HL     G   S L I N L+ +Y +CG    A  LF+ +
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHG-FGSNLKIVNALIDLYSKCGELETACGLFERL 327

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
           P ++  SWN +I G+  +   +++L LF  M       ND +  ML    A A L A++ 
Sbjct: 328 PYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT--MLSILPACAHLGAIDI 385

Query: 124 GKQIHSHI--LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           G+ IH +I   + G+   S L +SL+++Y KCGD  +A+QV N +        +A+I G+
Sbjct: 386 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           A  G+ + +   FD                            LF +MR+ G+  D  T  
Sbjct: 446 AMHGRADAS---FD----------------------------LFSRMRKIGIQPDDITFV 474

Query: 242 SVLSACSSLGFLEHGKQV 259
            +LSACS  G L+ G+ +
Sbjct: 475 GLLSACSHSGMLDLGRHI 492


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 186/611 (30%), Positives = 296/611 (48%), Gaps = 107/611 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C+   ++   + +H H +K     + L +   ++ MY++C     A  LF  MP R+ 
Sbjct: 62  KACSKLLNLKYSQIVHTHVVKSR-FQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDV 120

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIHSH 130
            SWN+MI GF +LG  ++ + LF  M  +   + ++ + G   + L+   L+  + IHS 
Sbjct: 121 ASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSF 180

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +  G+D D     S+ N +                           I+ YA CG+   A
Sbjct: 181 GIKIGIDTDV----SVSNTW---------------------------IAAYAKCGEFGLA 209

Query: 191 RRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
             VFD       + V WNSMI+GY    + ++A+  F KM   G   D ST+ S+LS+C 
Sbjct: 210 ETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSSCV 269

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
               L HGK +H H  +VG   D+ V                               +NT
Sbjct: 270 QPEVLFHGKLIHAHGIQVGCDSDIQV-------------------------------INT 298

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +I++YS CG I  A+++F  M  K+ +SW +MI G ++ G   EA+ LF  M  +  + D
Sbjct: 299 LISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPD 358

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
             ++ S++S C    +LELG+ +    T  GL  + ++  +L+D Y KCG          
Sbjct: 359 LVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFY 418

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +AL LF +M   G+KP  ITF A+L AC+H G +++
Sbjct: 419 TMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEK 478

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G + F+ M   Y I+P ++HYSCM DL  R G L EA   I+ MPF+ DVG+WS +L  C
Sbjct: 479 GWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSAC 538

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR----EKHVG 571
             H +  +G  VA  + EL+P+ A  Y+Q+++I+A++G+W++ + IR +M+     K  G
Sbjct: 539 KIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSSG 598

Query: 572 KLPGCS--WAD 580
           + P CS  W D
Sbjct: 599 EKP-CSSKWED 608



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 199/497 (40%), Gaps = 101/497 (20%)

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHIL 132
           WN+ I   +  G+  K+L LF  M Q      N+     AKA   L  L+Y + +H+H++
Sbjct: 22  WNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVV 81

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
            +    D  + +S+V++Y K                               C ++  A  
Sbjct: 82  KSRFQADLFVQTSVVDMYVK-------------------------------CSQLGFAYN 110

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           +F R        WNSMI G+         + LF +M   G+  D+ T+  +  +  SL  
Sbjct: 111 LFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKD 170

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L+  + +H    K+G+  DV V+                               NT I  
Sbjct: 171 LKMLESIHSFGIKIGIDTDVSVS-------------------------------NTWIAA 199

Query: 313 YSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
           Y+ CG    A+ +F  +    K+ +SWNSMI G +      +A+  F  M     R D  
Sbjct: 200 YAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLS 259

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------ 418
           ++ S++S+C     L  G+ + A    +G DSD  +  +L+  Y KCG            
Sbjct: 260 TILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNM 319

Query: 419 ---------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                 +A+ LF+ M   G KP ++T  +++S C   G ++ G 
Sbjct: 320 LGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELG- 378

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           KW D       +   +   + ++D++A+ G ++ A  L   MP E  +  W++++ GC  
Sbjct: 379 KWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTLIAGCAL 437

Query: 518 HGDKGLGRKVAERMIEL 534
           +G+      +  +M+EL
Sbjct: 438 NGEFKEALGLFFQMVEL 454



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 160/367 (43%), Gaps = 69/367 (18%)

Query: 190 ARRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           A + F+R ++  +V  WNS I+  ++     +ALLLF +M++NG+  +  T  SV  ACS
Sbjct: 6   ATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACS 65

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            L  L++ + VH H  K     D+ V ++++D Y K                        
Sbjct: 66  KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVK------------------------ 101

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  C ++  A ++F  MP + + SWNSMI G +Q G     + LFC M    +R D
Sbjct: 102 -------CSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRAD 154

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD 420
             ++  +  +  ++  L++ E + +    IG+D+D  +S + +  Y KCG        +D
Sbjct: 155 SVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFD 214

Query: 421 ---------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                      A+  F +M   G +  + T  ++LS+C    ++
Sbjct: 215 GIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSSCVQPEVL 274

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
             G K   A   Q   D +I+  + ++ ++++ G +  A  L + M  +  V  W++++ 
Sbjct: 275 FHG-KLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVS-WTAMIA 332

Query: 514 GCVAHGD 520
           G    GD
Sbjct: 333 GXAEKGD 339


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 193/692 (27%), Positives = 315/692 (45%), Gaps = 154/692 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++      + +GKQ+H H  K G    ++ +AN L+ +Y +CG+      +FD +  R
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLA-ALEYGK 125
           N  SWN++I         E +L+ F  M  +N     F+   +++  +   +   L  GK
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCG---------------DFNSANQVLNMM---- 166
           Q+H++ L  G + +S + ++LV +YGK G               D  + N VL+ +    
Sbjct: 223 QVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 281

Query: 167 ----------------KEPDDFCLS----------------------------------- 175
                            EPD+F +S                                   
Sbjct: 282 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVG 341

Query: 176 -ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GV 233
            AL+  Y NC ++   RRVFD   D    +WN+MI+GY  N  D EALLLF  M  + G+
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGL 401

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           L +++T+A V+ AC   G     + +HG   K G+  D  V                   
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQ------------------ 443

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                        NT++ +YS  G+I+ A  IF  M ++ L++WN+MI G   +    +A
Sbjct: 444 -------------NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490

Query: 354 LDLFCNMNKLDLRMDK-----------FSLASVISACANISSLELGEQVFARVTIIGLDS 402
           L L   M  L+ ++ K            +L +++ +CA +S+L  G+++ A      L +
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550

Query: 403 DQIISTSLVDFYCKCG---------------------------------YDALALFNEMR 429
           D  + ++LVD Y KCG                                  +A+ L   M 
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
             GVKP  +TF ++ +AC H G+V EG + F  MK  Y ++P  +HY+C+VDL  RAG +
Sbjct: 611 VQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRI 670

Query: 490 NEAVNLIEQMPFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
            EA  L+  MP + +  G WSS+L     H +  +G   A+ +I+L+P  A  Y+ L++I
Sbjct: 671 KEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANI 730

Query: 549 FATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++++G W+K++ +R  M+E+ V K PGCSW +
Sbjct: 731 YSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 140/347 (40%), Gaps = 70/347 (20%)

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           W  ++   + +N   EA+L +  M   G+  D     ++L A + L  +E GKQ+H H  
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 265 KVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
           K G  +D V VA                               NT++ +Y  CG      
Sbjct: 125 KFGYGVDSVTVA-------------------------------NTLVNLYRKCGDFGAVY 153

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI- 382
            +F  +  ++ +SWNS+I  L        AL+ F  M   ++    F+L SV++AC+N+ 
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 383 --SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
               L +G+QV A     G  +  II+T LV  Y K G                      
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 419 -----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +AL    EM   GV+P   T +++L AC H  +++ G++         
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            +D      S +VD++     +     + + M F+  +G+W++++ G
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 193/692 (27%), Positives = 315/692 (45%), Gaps = 154/692 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++      + +GKQ+H H  K G    ++ +AN L+ +Y +CG+      +FD +  R
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLA-ALEYGK 125
           N  SWN++I         E +L+ F  M  +N     F+   +++  +   +   L  GK
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCG---------------DFNSANQVLNMM---- 166
           Q+H++ L  G + +S + ++LV +YGK G               D  + N VL+ +    
Sbjct: 223 QVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 281

Query: 167 ----------------KEPDDFCLS----------------------------------- 175
                            EPD+F +S                                   
Sbjct: 282 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVG 341

Query: 176 -ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GV 233
            AL+  Y NC ++   RRVFD   D    +WN+MI+GY  N  D EALLLF  M  + G+
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGL 401

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           L +++T+A V+ AC   G     + +HG   K G+  D  V                   
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQ------------------ 443

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                        NT++ +YS  G+I+ A  IF  M ++ L++WN+MI G   +    +A
Sbjct: 444 -------------NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490

Query: 354 LDLFCNMNKLDLRMDK-----------FSLASVISACANISSLELGEQVFARVTIIGLDS 402
           L L   M  L+ ++ K            +L +++ +CA +S+L  G+++ A      L +
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550

Query: 403 DQIISTSLVDFYCKCG---------------------------------YDALALFNEMR 429
           D  + ++LVD Y KCG                                  +A+ L   M 
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
             GVKP  +TF ++ +AC H G+V EG + F  MK  Y ++P  +HY+C+VDL  RAG +
Sbjct: 611 VQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRI 670

Query: 490 NEAVNLIEQMPFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
            EA  L+  MP + +  G WSS+L     H +  +G   A+ +I+L+P  A  Y+ L++I
Sbjct: 671 KEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANI 730

Query: 549 FATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++++G W+K++ +R  M+E+ V K PGCSW +
Sbjct: 731 YSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 140/347 (40%), Gaps = 70/347 (20%)

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           W  ++   + +N   EA+L +  M   G+  D     ++L A + L  +E GKQ+H H  
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 265 KVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
           K G  +D V VA                               NT++ +Y  CG      
Sbjct: 125 KFGYGVDSVTVA-------------------------------NTLVNLYRKCGDFGAVY 153

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI- 382
            +F  +  ++ +SWNS+I  L        AL+ F  M   ++    F+L SV++AC+N+ 
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 383 --SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
               L +G+QV A     G  +  II+T LV  Y K G                      
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 419 -----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +AL    EM   GV+P   T +++L AC H  +++ G++         
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            +D      S +VD++     +     + + M F+  +G+W++++ G
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 180/604 (29%), Positives = 297/604 (49%), Gaps = 71/604 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G Q+H   +K G     + + N L+  Y  CG       +FD+M  R
Sbjct: 145 VLSACTKSAALTEGFQVHGAIVKMG-FERDMFVENSLIHFYGECGEIDCMRRVFDKMSER 203

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           N  SW ++I G+ K G  ++++ LF     V  + N  +   +IS  AK  L  L+ G+Q
Sbjct: 204 NVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAK--LQDLQLGEQ 261

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           + + I    L+ ++++ ++LV++Y K                               CG 
Sbjct: 262 VCTCIGELELEVNALMVNALVDMYMK-------------------------------CGA 290

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           ++ AR++FD   D + V++N+++S Y+      E L +  +M ++G   D  T+ S +SA
Sbjct: 291 IDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSA 350

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS L  +  GK  HG+  + G+     V +A+++ Y K G    AC++F  +     +  
Sbjct: 351 CSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSW 410

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N++I  +   G +E A  IF  MP+  L+SWN+MI  L Q     EA++LF  M    + 
Sbjct: 411 NSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGIT 470

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------- 417
            DK ++  V SAC  + +L+L + +   +    +  D  + T+LVD + +C         
Sbjct: 471 ADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQV 530

Query: 418 ------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                   G  A+ LF+EM   G+KP  + F A+L+A  H GLV
Sbjct: 531 FNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLV 590

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           ++G   F +MK  Y I P+  HY CMVDL  RAG L+EA++LI  M  E +  +W S+L 
Sbjct: 591 EQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLA 650

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  +    AER+ ELDPE    ++ LS+I+A++G W+  + +R  ++EK   K+
Sbjct: 651 ACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKM 710

Query: 574 PGCS 577
           PG S
Sbjct: 711 PGSS 714



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 185/444 (41%), Gaps = 89/444 (20%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQ+HS I  NGL+   +   SL NL   C +  +   +    K  + F            
Sbjct: 50  KQLHSQITKNGLNHHPL---SLTNLISSCTEMGTFESLEYAQKALELF------------ 94

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                   + D     +  M++S+I G+ +     +A+++F ++   G + D  T   VL
Sbjct: 95  --------IEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVL 146

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SAC+    L  G QVHG   K+G   D+ V                              
Sbjct: 147 SACTKSAALTEGFQVHGAIVKMGFERDMFVE----------------------------- 177

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N++I  Y  CG I+  + +F  M  ++++SW S+I G ++ G   EA+ LF  M ++ 
Sbjct: 178 --NSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVG 235

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           +R +  ++  VISACA +  L+LGEQV   +  + L+ + ++  +LVD Y KCG      
Sbjct: 236 IRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKAR 295

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       + LA+  EM   G +P  IT  + +SAC    
Sbjct: 296 KIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELD 355

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V  G KW      +  ++      + +++++ + G    A  + ++M  +  V  W+S+
Sbjct: 356 DVSCG-KWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVS-WNSL 413

Query: 512 LRGCVAHGDKGLGRKVAERMIELD 535
           + G V +GD     K+   M + D
Sbjct: 414 IAGFVRNGDMESAWKIFSAMPDSD 437


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 186/647 (28%), Positives = 303/647 (46%), Gaps = 109/647 (16%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF 95
           I+++ + I+N     Y +      A  LFD+MP+R   SWN MI  + K G   ++L L 
Sbjct: 72  IISTNIAISN-----YAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLV 126

Query: 96  NVMPQKN----DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
             M + +    + +++ ++S  A+  L  L  GK IH  +L +G +   ++GS+L+  Y 
Sbjct: 127 YSMHRSHMKLSESTFSSVLSVCAR--LRCLRDGKLIHCLVLKSGSESFELVGSALLYFYA 184

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
            C +   A +V +++   ++   S ++ GY  C  M+DA  VF +      V W ++ISG
Sbjct: 185 SCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISG 244

Query: 212 YISNNEDT-EALLLFHKMRRNG-VLEDASTLASVLSACSSLGF---------------LE 254
           +  N +   +AL +F  M R+G    +  T   V+ AC  LG                LE
Sbjct: 245 FSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLE 304

Query: 255 HGKQVHG----HACKVGVIDDV-------------------------------------- 272
           +   + G      C+   IDD                                       
Sbjct: 305 YDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGM 364

Query: 273 -----IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
                +  + ++  Y+  G   D+ +LF ++        NTMI+VYS  G I+ A  +F 
Sbjct: 365 TEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFE 424

Query: 328 TMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
              N K  ++WNSMI G   +G P EAL L+  M++L ++  + + +++  AC+ + SL+
Sbjct: 425 ETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQ 484

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------- 419
            G+ + A +     +S+  + TSL+D Y KCG                            
Sbjct: 485 QGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHA 544

Query: 420 ------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
                 +A++LF+ M   G+ P   TF  +LSAC   GLV EG K F +M+  Y + P +
Sbjct: 545 YHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTL 604

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           EHY+C+VDL  R+G + EA   I++MP EAD  +W ++L  C    D  +G +VAE+M  
Sbjct: 605 EHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFS 664

Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            DP+   +Y+ LS+I+A  G W +  ++R I+R   V K PGCSW +
Sbjct: 665 FDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIE 711



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 108/224 (48%), Gaps = 40/224 (17%)

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           + I  N  I+ Y+   +++ A+ +F  MP ++++SWN+MI   S++G   EAL L  +M+
Sbjct: 71  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH 130

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA 421
           +  +++ + + +SV+S CA +  L  G+ +   V   G +S +++ ++L+ FY  C    
Sbjct: 131 RSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASC---- 186

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
              F                           + E ++ FD +  +  +      +S M+ 
Sbjct: 187 ---FE--------------------------IGEARRVFDVLVRRNEV-----LWSLMLV 212

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
            +     +++A+++  +MP   DV  W++++ G   +GD G G+
Sbjct: 213 GYVTCNVMDDALSVFVKMP-RRDVVAWTTLISGFSKNGD-GCGK 254


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 174/585 (29%), Positives = 277/585 (47%), Gaps = 92/585 (15%)

Query: 34  KGILNSTLPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88
           +G+ + T+P  N      LL  Y RCG   +A  LFD MP R+  SWNAMI G++  G  
Sbjct: 44  RGVFD-TMPFRNSVSWAALLTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMV 102

Query: 89  EKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS--HILVNGLDFDSVLGSSL 146
           +++  LF+VMP +ND SW M+ISG+ K         K++     I        + + ++L
Sbjct: 103 DRARDLFDVMPARNDVSWLMMISGYMKR--------KRVREAREIFDRAPSPTTSVCNAL 154

Query: 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
           ++ Y + G    A  +   M+ PD    +A+I+GY   G M  A+R+FD   +  +V W 
Sbjct: 155 LSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMPEKDTVSWT 214

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           +++ GY+ N +   A  +F  M    VL   + ++         GF              
Sbjct: 215 AIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMS---------GF-------------- 251

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
                  V S  LD         DA +LF+++   D +  NT++  Y   G ++ A   F
Sbjct: 252 -------VVSERLD---------DALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWF 295

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
           R MP K   SWN++I G    G    AL+L   M +   R D+ + +  IS C+++++L 
Sbjct: 296 RKMPEKDEASWNTLISGYKDEG----ALNLLSEMTQGGYRPDQATWSVAISICSSLAALG 351

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------- 419
            G  V       G + D ++ +SL+  Y KCG                            
Sbjct: 352 CGRMVHVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYA 411

Query: 420 ------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
                 +AL LF+ M   G  P   TF ++LSAC H G + EG   F +M+  +++ P  
Sbjct: 412 YHGLAAEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRS 471

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           +HYSCMVDL  R+G +++A N   ++P +  +  W ++   C AHGD  LG  VA+ +++
Sbjct: 472 DHYSCMVDLLGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCNAHGDIQLGELVAKNVLQ 531

Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
             P +   Y  LS+I+A  G W  ++ +R +M+E+ + K  GCSW
Sbjct: 532 SRPSDGGMYTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETGCSW 576



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/498 (22%), Positives = 204/498 (40%), Gaps = 115/498 (23%)

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLG 143
           + G    + ++F+ M ++N F+WN +ISG  +                  NG+       
Sbjct: 5   RAGRVGAARRVFDEMSERNVFTWNCMISGLVR------------------NGM------- 39

Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
                          A  V + M   +    +AL++GYA CG++ +AR +FDR  D S V
Sbjct: 40  ------------LTDARGVFDTMPFRNSVSWAALLTGYARCGRVAEARELFDRMPDRSVV 87

Query: 204 MWNSMISGYISN----------------NEDTEALLLFHKMRRNGVLEDASTL----ASV 243
            WN+MISGY+ N                N+ +  +++   M+R  V E         +  
Sbjct: 88  SWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIFDRAPSPT 147

Query: 244 LSACSSL--GFLEHG--KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            S C++L  G+ EHG  K       ++    D++  +A++  Y++ GM   A +LF E+ 
Sbjct: 148 TSVCNALLSGYAEHGYLKDAEDLFGRMQT-PDLVSWNAMITGYTRAGMMQVAQRLFDEMP 206

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             DT+    ++  Y   G ++ A  +F+ MP++ +++WN+M+ G   +    +AL LF +
Sbjct: 207 EKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMSGFVVSERLDDALRLFAD 266

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M   DL     S  +++        ++     F ++     + D+    +L+  Y   G 
Sbjct: 267 MPDRDL----VSWNTILQGYVQQGDMDGATAWFRKMP----EKDEASWNTLISGYKDEG- 317

Query: 420 DALALFNEMRNTGVKPTIITFTAILSAC-------------------------------- 447
            AL L +EM   G +P   T++  +S C                                
Sbjct: 318 -ALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERDALVMSSLI 376

Query: 448 ---DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---F 501
                CGL+ E  + FD +     +  +   ++ M+  +A  G   EA+ L ++M    F
Sbjct: 377 SMYSKCGLITEASQVFDLI-----VQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDGF 431

Query: 502 EADVGMWSSILRGCVAHG 519
             D   + S+L  C   G
Sbjct: 432 SPDHATFLSVLSACAHKG 449



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 139/314 (44%), Gaps = 50/314 (15%)

Query: 259 VHGHACKVG----VIDD-----VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
            H  A +VG    V D+     V   + ++    + GM +DA  +F  +   +++    +
Sbjct: 2   AHFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAAL 61

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           +T Y+ CGR+ +A+ +F  MP++S++SWN+MI G   NG    A DLF   + +  R D 
Sbjct: 62  LTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLF---DVMPARND- 117

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNE 427
            S   +IS       +    ++F R           +  +L+  Y + GY  DA  LF  
Sbjct: 118 VSWLMMISGYMKRKRVREAREIFDRAP----SPTTSVCNALLSGYAEHGYLKDAEDLFGR 173

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK----------------------- 464
           M+     P ++++ A+++     G+++  Q+ FD M                        
Sbjct: 174 MQT----PDLVSWNAMITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAA 229

Query: 465 ---WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
              +Q   D ++  ++ M+  F  +  L++A+ L   MP + D+  W++IL+G V  GD 
Sbjct: 230 WKVFQDMPDRDVLAWNTMMSGFVVSERLDDALRLFADMP-DRDLVSWNTILQGYVQQGDM 288

Query: 522 GLGRKVAERMIELD 535
                   +M E D
Sbjct: 289 DGATAWFRKMPEKD 302


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 175/610 (28%), Positives = 291/610 (47%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C    ++  G+ +H   ++ G       I+  L+ MY +CG   DAL +F  +
Sbjct: 333 LSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEF-ISCCLVDMYSKCGLAGDALKVFVRI 391

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              +  SW+A+I    + G   ++ ++F  M       N F+   L+S  A  DL  L Y
Sbjct: 392 EDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVS--AATDLGDLYY 449

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+ IH+ +   G ++D+ + ++LV +Y K                               
Sbjct: 450 GESIHACVCKYGFEYDNTVCNALVTMYMKI------------------------------ 479

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G + D  RVF+ TT+   + WN+++SG+  N      L +F++M   G   +  T  S+
Sbjct: 480 -GSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISI 538

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L +CSSL  ++ GKQVH    K  +  +  V +AL+D Y+K                   
Sbjct: 539 LRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRF---------------- 582

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                          +EDA+ IF  +  + L +W  ++ G +Q+G   +A+  F  M + 
Sbjct: 583 ---------------LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQRE 627

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            ++ ++F+LAS +S C+ I++L+ G Q+ +     G   D  ++++LVD Y KCG     
Sbjct: 628 GVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA 687

Query: 419 ---YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHC 450
              +D                         AL  F  M + G  P  +TF  +LSAC H 
Sbjct: 688 EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHM 747

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GL++EG+K F+++   Y I P IEHY+CMVD+  RAG  +E  + IE+M   ++V +W +
Sbjct: 748 GLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWET 807

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  HG+   G + A ++ EL+PE    YI LS++FA  G W+  + +R +M  + V
Sbjct: 808 VLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGV 867

Query: 571 GKLPGCSWAD 580
            K PGCSW +
Sbjct: 868 KKEPGCSWVE 877



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 170/340 (50%), Gaps = 45/340 (13%)

Query: 135 GLDFDSV----LGSSLVNLYGKCGDFNSAN----QVLNMMKEPDDFCLSALISGYANCGK 186
           GLDFDS       S ++      GD N       QV+     PD    ++L++ YA CG 
Sbjct: 119 GLDFDSKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGS 178

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            N A +VF    +   V W ++I+G+++    + A+ LF +MRR GV  +  T A+ L A
Sbjct: 179 ANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKA 238

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS    LE GKQVH  A KVG   D+ V SAL+D Y+K                      
Sbjct: 239 CSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAK---------------------- 276

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG +  A+ +F  MP ++ +SWN+++ G +Q G   + L+LFC M   ++ 
Sbjct: 277 ---------CGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEIN 327

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALAL 424
             KF+L++V+  CAN  +L  G+ V +    IG + D+ IS  LVD Y KCG   DAL +
Sbjct: 328 FSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKV 387

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
           F  + +    P +++++AI++  D  G  +E  + F  M+
Sbjct: 388 FVRIED----PDVVSWSAIITCLDQKGQSREAAEVFKRMR 423



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 144/571 (25%), Positives = 255/571 (44%), Gaps = 107/571 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+   + +L++C +   ++ GK +H   +K GI N    + N L+ +Y +CG+   A  +
Sbjct: 127 RLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGI-NPDSHLWNSLVNVYAKCGSANYACKV 185

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
           F E+P R+  SW A+I GF+  G+   ++ LF  M ++    N+F++   +   A +   
Sbjct: 186 FGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALK--ACSMCL 243

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            LE+GKQ+H+  +  G   D  +GS+LV+LY KCG+   A +V   M + +    +AL++
Sbjct: 244 DLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLN 303

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           G+A   +M DA +V +                            LF +M  + +     T
Sbjct: 304 GFA---QMGDAEKVLN----------------------------LFCRMTGSEINFSKFT 332

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L++VL  C++ G L  G+ VH  A ++G   D  ++  L+D YSK G+  DA K+F  ++
Sbjct: 333 LSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE 392

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             D +  + +IT     G+  +A  +F+ M +  +I                        
Sbjct: 393 DPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIP----------------------- 429

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
                   ++F+LAS++SA  ++  L  GE + A V   G + D  +  +LV  Y K G 
Sbjct: 430 --------NQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGS 481

Query: 419 -------YDA-------------------------LALFNEMRNTGVKPTIITFTAILSA 446
                  ++A                         L +FN+M   G  P + TF +IL +
Sbjct: 482 VQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRS 541

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C     V  G K   A   +  +D      + +VD++A+   L +A  +  ++  + D+ 
Sbjct: 542 CSSLSDVDLG-KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLF 599

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
            W+ I+ G   +   G G K  +  I++  E
Sbjct: 600 AWTVIVAG---YAQDGQGEKAVKCFIQMQRE 627


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 198/686 (28%), Positives = 321/686 (46%), Gaps = 118/686 (17%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEMP 68
           +LLQSC    S  +G++LH      G+L    P +  +L+ MY +CG+  +A  +F EM 
Sbjct: 90  QLLQSCIDQGSAELGRKLHARI---GLLEEMNPFVETKLVSMYAKCGSLGEARKVFGEMR 146

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQ 126
            RN ++W+AMI  + +     + +Q F  M +        L+    +A  +    E GK 
Sbjct: 147 ERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNCGDAETGKL 206

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IHS ++  G++F+  + +S++ +Y KCG  + A +    M   D    +++I+GY   G+
Sbjct: 207 IHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGE 266

Query: 187 MNDARRVFDRTT-------------------------DTSSVM--------------WNS 207
           +  + ++F++                           D   +M              W S
Sbjct: 267 LEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTS 326

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           MISG+  NN  ++AL LF +M   G+  +  T+ S +SAC+SL  L+ G ++H  A K+G
Sbjct: 327 MISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIG 386

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSEL----------------------KVYD--- 302
            ++D++V ++L+D YSK G   DA ++F  +                      K YD   
Sbjct: 387 CVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFI 446

Query: 303 ----------TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI-----SWNSMIVGLSQN 347
                      +  N MI+ Y   G  + A  +F  M    LI     SWNS+I G  QN
Sbjct: 447 KMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQN 506

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANI-------------------SSLEL- 387
           G   +AL +F  M    +R +  ++ S++ ACAN+                   S L + 
Sbjct: 507 GHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVA 566

Query: 388 ----------GEQVFARVTIIGLDSDQIIS-TSLVDFYC--KCGYDALALFNEMRNTGVK 434
                     G  V+A+    G+ S  IIS  SL+  Y    C   AL LF++M   GVK
Sbjct: 567 NCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVK 626

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P+  TF +I+ A    G+V +G++ F +M   Y I P +EH+S M+DL  R+G L EA+ 
Sbjct: 627 PSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIE 686

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
            IE M  E D  +W+++L     HG+ GL  +  E ++EL+P N   + Q+  ++A SG+
Sbjct: 687 FIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEPSNFSIHQQILQMYALSGK 746

Query: 555 WEKSSLIRDIMREKHVGKLPGCSWAD 580
           +E  S +R   +     +  GCSW +
Sbjct: 747 FEDVSKLRKSEKRSETKQPLGCSWIE 772



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/558 (23%), Positives = 245/558 (43%), Gaps = 158/558 (28%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L ++LQ+C        GK +H   ++ G +N  + ++N +L +Y +CG  + A   F+ M
Sbjct: 188 LPKILQACGNCGDAETGKLIHSLVIRCG-MNFNIRVSNSILAVYAKCGRLSCARRFFENM 246

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
             R+  SWN++I G+ + G  EKS QLF  M ++                          
Sbjct: 247 DYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAM 306

Query: 102 -------------NDFSWNMLISGFAK--------------------------------- 115
                        + F+W  +ISGFA+                                 
Sbjct: 307 ELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISAC 366

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           A L AL+ G ++HS  +  G   D ++G+SL+++Y K G+   A +V +M+ + D +  +
Sbjct: 367 ASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWN 426

Query: 176 ALISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
           ++I GY   G    A  +F +  ++    + V WN+MISGYI N ++ +A+ LFH+M ++
Sbjct: 427 SMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKD 486

Query: 232 GVLE------------------------------------DASTLASVLSACSSLGFLEH 255
           G+++                                    ++ T+ S+L AC++L   + 
Sbjct: 487 GLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKK 546

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
            K++HG   +  +  ++ VA+ L+DTY+K G                             
Sbjct: 547 VKEIHGCILRRNLGSELSVANCLIDTYAKSG----------------------------- 577

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
              I  A+ IF+ + +K +ISWNS+I G   +G    ALDLF  M K+ ++  + +  S+
Sbjct: 578 --NIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSI 635

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIIS-----TSLVDFYCKCGY--DALALFNEM 428
           I A +    ++ G+QVF+ +    ++  QI+      ++++D   + G   +A+    +M
Sbjct: 636 IYAFSLSGMVDKGKQVFSSM----MEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDM 691

Query: 429 RNTGVKPTIITFTAILSA 446
               ++P    + A+L+A
Sbjct: 692 ---AIEPDSCIWAALLTA 706


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 185/624 (29%), Positives = 299/624 (47%), Gaps = 111/624 (17%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G+ +H   +K G +   + +A+ L+ MY +     D++ +FDEMP R+  SWN +I  F
Sbjct: 124 LGRMIHTVVVKSGHVCDVV-VASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSF 182

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWN---MLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
            + G  EK+L+LF  M +++DF  N   + ++  A + L  LE GK+IH   L    + D
Sbjct: 183 YQRGDAEKALELFGRM-ERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELD 241

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
             + S+LV++                               Y  C  +  AR VF +   
Sbjct: 242 EYVNSALVDM-------------------------------YGRCDFLEMAREVFQQMRR 270

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
            S V WNSMI GY++  +    + L ++M   G     +TL S+L ACS    L HGK V
Sbjct: 271 KSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFV 330

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           HG+  +  V  D+ +  +L+D Y K G          E+K+ +T+ L T   V  S    
Sbjct: 331 HGYVIRSVVDADIYINCSLIDLYFKCG----------EVKLAETVFLKTQKDVVES---- 376

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
                            WN MI G    G+  +A+D++  M  + ++ D  +  SV+S C
Sbjct: 377 -----------------WNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTC 419

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------- 418
           + +++LE G+Q+   ++   L++D+++ ++L+D Y KCG                     
Sbjct: 420 SQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWT 479

Query: 419 ------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        +AL  F+EM+  GVKP  +TF A+LSAC H GL+ EG K+F  M+ +
Sbjct: 480 VMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSK 539

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD-VGMWSSILRGCVAHGDKGLGR 525
           Y I+  IE YSC++D+  RAG L EA  +++Q P   D   + S++   C  H D  LG 
Sbjct: 540 YGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRDNAELLSTLFCACCLHRDHLLGY 599

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFN 585
            +A+ ++E  P++A  Y  L +++A+   W+ +  +R  M+E  + K PGCSW +     
Sbjct: 600 TIAKLLVEKYPDDASTYTVLFNLYASGESWDAAKRVRLKMKEVGMRKKPGCSWIEMNEKV 659

Query: 586 CWFLDTMFLQLANFDEIKQHQSAD 609
           C F          F E + H  A+
Sbjct: 660 CHF----------FAEDRSHPQAE 673



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 128/552 (23%), Positives = 233/552 (42%), Gaps = 108/552 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL+ C    S+   K +H   L  G L S + +   L+ +Y  C +   A L+F+  
Sbjct: 6   LLSLLRECTNTKSLRQAKLVHQRILTVG-LRSDVVLCKSLINVYFACKDHCSARLVFE-- 62

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL---AALEYG 124
                                       N+  + + + WN L+SG++K  +       + 
Sbjct: 63  ----------------------------NIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFK 94

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC----LSALISG 180
           + ++  I V     DS    +++  YG  G       +  ++ +    C     S+L+  
Sbjct: 95  RLLNCPICVP----DSFTYPNVIKAYGALGREFLGRMIHTVVVKSGHVCDVVVASSLVGM 150

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA      D+ +VFD   +     WN++IS +    +  +AL LF +M R+    ++ ++
Sbjct: 151 YAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSI 210

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
              +SACS L  LE GK++H    K     D  V SAL+D Y +                
Sbjct: 211 TVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGR---------------- 254

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          C  +E A+ +F+ M  KSL++WNSMI G    G     ++L   M
Sbjct: 255 ---------------CDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRM 299

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                R  + +L S++ AC+   +L  G+ V   V    +D+D  I+ SL+D Y KCG  
Sbjct: 300 IIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEV 359

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                          + A+ ++++M + GV+P I+TFT++LS C
Sbjct: 360 KLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTC 419

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
                +++G++   ++  +  ++ +    S ++D++++ G + EA  +   +P + DV  
Sbjct: 420 SQLAALEKGKQIHLSIS-ESRLETDELLLSALLDMYSKCGNVKEASRIFNSIP-KKDVVS 477

Query: 508 WSSILRGCVAHG 519
           W+ ++    +HG
Sbjct: 478 WTVMISAYGSHG 489



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 185/415 (44%), Gaps = 76/415 (18%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + +C+    +  GK++H  +LKK   L+  +  A  L+ MY RC     A  +F +M R+
Sbjct: 214 ISACSRLLCLERGKEIHRKYLKKEFELDEYVNSA--LVDMYGRCDFLEMAREVFQQMRRK 271

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALEYG 124
           +  +WN+MI G++  G  +  ++L N M      P +   +  ++    ++     L +G
Sbjct: 272 SLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSR----NLLHG 327

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K +H +++ + +D D  +  SL++LY KCG+   A                         
Sbjct: 328 KFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAET----------------------- 364

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                   VF +T       WN MISGY+S     +A+ ++ +M   GV  D  T  SVL
Sbjct: 365 --------VFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVL 416

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S CS L  LE GKQ+H    +  +  D ++ SALLD YSK G   +A ++F+ +   D +
Sbjct: 417 STCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVV 476

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
               MI+ Y S                               +G P EAL  F  M K  
Sbjct: 477 SWTVMISAYGS-------------------------------HGQPREALYHFDEMQKFG 505

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 418
           ++ D  +  +V+SAC +   ++ G + F+++ +  G+++     + L+D   + G
Sbjct: 506 VKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAG 560



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 188/452 (41%), Gaps = 103/452 (22%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +L   K +H  IL  GL  D VL  SL+N+Y  C D  SA                    
Sbjct: 18  SLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSA-------------------- 57

Query: 180 GYANCGKMNDARRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDA 237
                      R VF+     S V +WNS++SGY  N+   + L +F ++    + + D+
Sbjct: 58  -----------RLVFENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDS 106

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T  +V+ A  +LG    G+ +H    K G + DV+VAS+L+  Y+K  +          
Sbjct: 107 FTYPNVIKAYGALGREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNL---------- 156

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                                 ED+  +F  MP + + SWN++I    Q G   +AL+LF
Sbjct: 157 ---------------------FEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELF 195

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M + D   +  S+   ISAC+ +  LE G+++  +      + D+ ++++LVD Y +C
Sbjct: 196 GRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRC 255

Query: 418 GYDALA--LFNEMRNT-------------------------------GVKPTIITFTAIL 444
            +  +A  +F +MR                                 G +P+  T T+IL
Sbjct: 256 DFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSIL 315

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG--CLNEAVNLIEQMPFE 502
            AC     +  G K+      +  +D +I     ++DL+ + G   L E V L  Q    
Sbjct: 316 MACSRSRNLLHG-KFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDV- 373

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
             V  W+ ++ G V+ G+      V ++M+ +
Sbjct: 374 --VESWNVMISGYVSVGNWFKAVDVYDQMVSV 403



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 10/167 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   ++  GKQ+HL  + +  L +   + + LL MY +CGN  +A  +F+ +P++
Sbjct: 415 VLSTCSQLAALEKGKQIHLS-ISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKK 473

Query: 71  NCFSWNAMIEGFMKLGHKEKSL------QLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  SW  MI  +   G   ++L      Q F V P    F   +   G A      ++Y 
Sbjct: 474 DVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYF 533

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
            Q+ S     G++      S L+++ G+ G    A  +L    E  D
Sbjct: 534 SQMRSKY---GIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRD 577


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 182/608 (29%), Positives = 297/608 (48%), Gaps = 73/608 (12%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+SC T   + +G QLH H LK   +   + +    L MY +C N  DA  LFD   
Sbjct: 286 ASVLKSCATLPDLRLGTQLHAHALKSDFVKDGI-VRTATLDMYAKCNNMQDAQRLFDMSE 344

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQ 126
             N  S+NAMI G+ +  +  ++L LF  + + +     + +SG  +A   +  L  G Q
Sbjct: 345 NLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQ 404

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H     +    +  + ++ +++YGKC                                 
Sbjct: 405 LHGLATKSNFSRNICVANAFIDMYGKCE-------------------------------A 433

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +++A RVFD      +V WN++I+ +  N E ++ L +   M R+G+  D  T  SVL A
Sbjct: 434 LDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKA 493

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+    L HG ++H    K+G+  +  + S+L+D YSK GM  +A K+ +++     I +
Sbjct: 494 CAG-DSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKI----FIGI 548

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
               T       IE+ K I      + ++SWN++I G        +A   F  M ++ + 
Sbjct: 549 GDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGIT 608

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            DKF+ ++V+  CAN++S+ LG+Q+ A V    L  D  I ++LVD Y KCG        
Sbjct: 609 PDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLM 668

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +A+ LF  M    + P   TF ++L AC H GLV
Sbjct: 669 FEKAPIRDFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLV 728

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           + G  +F  MK +Y +DP +EHYS MVD+  ++G + +A+ LI++MPFEAD  +W ++L 
Sbjct: 729 ERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTLLS 788

Query: 514 GC-VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            C +   +       A  ++ LDP+++  YI LS+I+A +G W+K+S +R  MR   + K
Sbjct: 789 ACKINRNNVEAAEVAANALLRLDPQDSSTYILLSNIYADAGMWDKASELRTAMRSDKLKK 848

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 849 EPGCSWVE 856



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 145/532 (27%), Positives = 240/532 (45%), Gaps = 83/532 (15%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T +   + + + C    +  +GKQ H H +  G    T+ ++N LLQ+Y+ CGN   A  
Sbjct: 47  TSVANFSFVFKECAKQRAHELGKQAHAHMIISG-FRPTVFVSNCLLQLYINCGNLGYATK 105

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122
           LFD MP R+  SWNAMI G+       ++   F +MP ++  SWN ++SGF       L+
Sbjct: 106 LFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGF-------LQ 158

Query: 123 YGKQIHS-----HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFC 173
            G+ + S      +  +G++FD+   S ++ +     ++    Q+    L M  + D   
Sbjct: 159 TGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVS 218

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
            SAL+  YA C +++++  VF      + + W+++I+G + NN     L +F +M++ GV
Sbjct: 219 GSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGV 278

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
               S  ASVL +C++L  L  G Q+H HA K   + D IV +A LD Y+K     DA +
Sbjct: 279 GVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQR 338

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF                                   N +L S+N+MI G SQ  +   A
Sbjct: 339 LFD-------------------------------MSENLNLQSYNAMITGYSQKDNGFRA 367

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L LF  ++K  L  D+ SL+  + ACA +  L  G Q+    T      +  ++ + +D 
Sbjct: 368 LLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDM 427

Query: 414 YCKCGY--DALALFNEMR-------------------------------NTGVKPTIITF 440
           Y KC    +A  +F+EM                                 +G++P   TF
Sbjct: 428 YGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTF 487

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
            ++L AC    L    +     +K     +P I   S +VD++++ G ++EA
Sbjct: 488 GSVLKACAGDSLNHGMEIHTTIVKLGMASNPYIG--SSLVDMYSKCGMIDEA 537



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 136/583 (23%), Positives = 255/583 (43%), Gaps = 126/583 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+ C+   +  +G Q+H   L+ G  ++ +   + LL MY +C    ++  +F  MP++
Sbjct: 187 ILKVCSILENYKLGTQIHGIALRMG-YDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQK 245

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIH 128
           N  SW+A+I G ++    +  L++F  M +        + +   K  A L  L  G Q+H
Sbjct: 246 NWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLH 305

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           +H L +    D ++ ++ +++Y K                               C  M 
Sbjct: 306 AHALKSDFVKDGIVRTATLDMYAK-------------------------------CNNMQ 334

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           DA+R+FD + + +   +N+MI+GY   +    ALLLF K+ ++ +  D  +L+  L AC+
Sbjct: 335 DAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACA 394

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           ++  L  G Q+HG A K     ++ VA+A +D Y K     +AC++F E           
Sbjct: 395 TVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDE----------- 443

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                               M  K  +SWN++I    QN    + L++  +M +  +  D
Sbjct: 444 --------------------MGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPD 483

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFN 426
           +++  SV+ ACA   SL  G ++   +  +G+ S+  I +SLVD Y KCG   +A  + N
Sbjct: 484 EYTFGSVLKACAG-DSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHN 542

Query: 427 E-----------------------MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
           +                       +++  V+  I+++ AI+S        ++ Q++F+ M
Sbjct: 543 KIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRM 602

Query: 464 --------KWQYH----------------------IDPEIEH--YSC--MVDLFARAGCL 489
                   K+ Y                       I  E+++  Y C  +VD++++ G L
Sbjct: 603 MEMGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNL 662

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           +++  + E+ P   D   W++++ G   HG      K+ E M+
Sbjct: 663 HDSRLMFEKAPIR-DFVTWNAMICGYAHHGMGEEAIKLFESMV 704



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 189/378 (50%), Gaps = 25/378 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L++C T   +  G QLH     K   +  + +AN  + MY +C    +A  +FDEM
Sbjct: 386 LSGALRACATVKGLSEGLQLH-GLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEM 444

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
            R++  SWNA+I    +   + K+L +   M     + +++++  ++   A     +L +
Sbjct: 445 GRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG---DSLNH 501

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G +IH+ I+  G+  +  +GSSLV++Y KCG  + A ++ N +     F      + Y+ 
Sbjct: 502 GMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKI-----FIGIGDSNTYSE 556

Query: 184 CGK-MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             + + + + + DR      V WN++ISGY+   +  +A   F++M   G+  D  T ++
Sbjct: 557 HPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYST 616

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL  C++L  +  GKQ+H H  K  +  DV + S L+D YSK G   D+  +F +  + D
Sbjct: 617 VLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRD 676

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRT------MPNKSLISWNSMIVGLSQNGSPIEALDL 356
            +  N MI  Y+  G  E+A  +F +      MPN +  ++ S++   +  G     LD 
Sbjct: 677 FVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHA--TFVSLLRACAHMGLVERGLDY 734

Query: 357 FCNMNK---LDLRMDKFS 371
           F  M K   LD R++ +S
Sbjct: 735 FHMMKKEYGLDPRLEHYS 752



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 109/283 (38%), Gaps = 72/283 (25%)

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           V   C+     E GKQ H H    G    V V++ LL                       
Sbjct: 55  VFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQ---------------------- 92

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                    +Y +CG +  A  +F  MP + ++SWN+MI G + +   + A   F  M  
Sbjct: 93  ---------LYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPT 143

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDAL 422
            D+     S  S++S       L+ GE +                            +++
Sbjct: 144 RDV----VSWNSMLSGF-----LQTGENL----------------------------ESV 166

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            +F EM  +GV+    +F+ IL  C      K G +    +  +   D ++   S ++D+
Sbjct: 167 KVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQ-IHGIALRMGYDTDVVSGSALLDM 225

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG--DKGL 523
           +A+   L+E+  +   MP +  +  WS+I+ GCV +   D GL
Sbjct: 226 YAKCKRLDESFTVFYAMPQKNWIS-WSAIIAGCVQNNFLDGGL 267


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 181/623 (29%), Positives = 296/623 (47%), Gaps = 107/623 (17%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R+D    +  L  C     + +G+ +H      G+    L + N L+ MY +CG    
Sbjct: 115 DLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVL-LTNSLIDMYCKCGRIDW 173

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK 115
           A L+F+     +  SWN++I G++++G  ++ L+L   M +     N ++    +     
Sbjct: 174 ARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGS 233

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
              +++E GK +H   +  GLD D V+G+                               
Sbjct: 234 NFSSSIECGKMLHGCAVKLGLDLDVVVGT------------------------------- 262

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI-----SNNEDTEALLLFHKMRR 230
           AL+  YA  G + DA ++F    D + VM+N+MI+G++     ++    EA+ LF +M+ 
Sbjct: 263 ALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQS 322

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
            G+     T +S+L ACS++   E GKQ+H    K  +  D  + +AL++          
Sbjct: 323 RGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVE---------- 372

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
                                +YS  G IED    F + P   ++SW S+IVG  QNG  
Sbjct: 373 ---------------------LYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQF 411

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
              L LF  +     + D+F+++ ++SACAN+++++ GEQ+ A     G+ +  II  S 
Sbjct: 412 EGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQ 471

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           +  Y KCG                                  +A+ LF  M+ +G+ P  
Sbjct: 472 ICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNH 531

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           ITF  +L AC H GLV+EG ++F+ MK  + I P ++H +C+VDL  RAG L EA + I 
Sbjct: 532 ITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIM 591

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
              FE D  MW S+L  C  H     G++VAER+IEL+PE A +Y+ L +I+  +G    
Sbjct: 592 DSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMP 651

Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
           ++ IR++M+++ V K PG SW +
Sbjct: 652 ATEIRNLMKDRGVKKEPGLSWIE 674



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 159/567 (28%), Positives = 244/567 (43%), Gaps = 143/567 (25%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
            +L+Q      S+  GK  H+H +K       L + N LL MY +CG    A  LFD MP
Sbjct: 23  TKLVQCSTRTGSLIHGKLAHMHMIKT-CFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMP 81

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALE 122
           +RN  SWN++I G+ ++G   + + LF      ++   K  FS  + + G        L 
Sbjct: 82  KRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCG----RTLDLR 137

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+ IH+ I V+GL    +L +SL+++Y KCG  + A  V     E D    ++LI+GY 
Sbjct: 138 LGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYV 197

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             G  ND                              E L L  KM R+G+  ++  L S
Sbjct: 198 RIGS-ND------------------------------EMLRLLVKMLRHGLNLNSYALGS 226

Query: 243 VLSACSS--LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            L AC S     +E GK +HG A K+G+  DV+V +ALLDTY+K G   DA K       
Sbjct: 227 ALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATK------- 279

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI-----EALD 355
                                   IF+ MP+ +++ +N+MI G  Q  +       EA+ 
Sbjct: 280 ------------------------IFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMY 315

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  M    ++  +F+ +S++ AC+ I + E G+Q+ A++    L SD+ I  +LV+ Y 
Sbjct: 316 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 375

Query: 416 ---------KCGYD------------------------ALALFNEMRNTGVKPTIITFTA 442
                    KC +                          L LF+E+  +G KP   T + 
Sbjct: 376 LSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISI 435

Query: 443 ILSACDHCGLVKEGQKW----------------------------FDA--MKWQYHIDPE 472
           +LSAC +   VK G++                              D+  M ++   +P+
Sbjct: 436 MLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPD 495

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQM 499
           I  +S M+   A+ GC  EAV+L E M
Sbjct: 496 IVSWSVMISSNAQHGCAKEAVDLFELM 522



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 193/429 (44%), Gaps = 77/429 (17%)

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQV-LNMMK---EPDDFCLSALISGYANCGKMNDA 190
           GL  DSV  + LV    + G         ++M+K   +P  F L+ L+  Y  CG+ + A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           +++FDR    + V WNS+ISGY       E + LF + R + +  D  T ++ LS C   
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L  G+ +H                  L T S  G P               +L N++I
Sbjct: 134 LDLRLGRLIHA-----------------LITVSGLGGP--------------VLLTNSLI 162

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
            +Y  CGRI+ A+ +F +      +SWNS+I G  + GS  E L L   M +  L ++ +
Sbjct: 163 DMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSY 222

Query: 371 SLASVISACAN--ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
           +L S + AC +   SS+E G+ +      +GLD D ++ T+L+D Y K G          
Sbjct: 223 ALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFK 282

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +A+ LF EM++ G+KP+  TF++IL AC   
Sbjct: 283 LMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTI 342

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
              + G K   A  ++Y++  +    + +V+L++ +G + + +      P + DV  W+S
Sbjct: 343 EAFECG-KQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTP-KLDVVSWTS 400

Query: 511 ILRGCVAHG 519
           ++ G V +G
Sbjct: 401 LIVGHVQNG 409


>gi|449527015|ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 202/654 (30%), Positives = 304/654 (46%), Gaps = 106/654 (16%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           NS +   N  +  ++R G+   A  LF+EMP R+  SWN MI G+ K G   ++L L + 
Sbjct: 34  NSNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASE 93

Query: 98  MP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
           M     + N+ +++ L+S  A +  ++   GKQ H  +L +GL     +GS+LV  Y   
Sbjct: 94  MHCNNVKLNETTFSSLLSICAHSGCSS--EGKQFHCLVLKSGLQIFERVGSALVYFYANI 151

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
            D + A QV + + + +D     L+ GY  C  M+DA  +F +      V W +MIS Y 
Sbjct: 152 NDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYA 211

Query: 214 SNNEDTE-ALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
            +  + +  L LF  MR NG +E +  T  SV+ AC  + +L  GK VHG   K G   D
Sbjct: 212 RSEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFD 271

Query: 272 VIVASALLDTYSK-------------------------------RGMPSDACKLFSELKV 300
             V SAL+  Y +                                G  +DA ++F +L+ 
Sbjct: 272 HSVCSALILFYCQCEAIDSAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLRE 331

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL-------------------------- 334
            + +  N M+  Y++ GRIE +K +F  M +K+                           
Sbjct: 332 KNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKLFESV 391

Query: 335 ------ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
                 ++WNSMI G  QN     AL L+  M +  +   + + +++  AC  +  ++LG
Sbjct: 392 KSEGDPVTWNSMISGYIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLG 451

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDA------------------------- 421
           + +         DS+  + TSL+D Y KCG  YDA                         
Sbjct: 452 QALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCLPNVAAFTALINGYVHH 511

Query: 422 ------LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
                  ++F+EM    V P   T   ILSAC   G+VKEG   F +M+  Y + P +EH
Sbjct: 512 GLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTLEH 571

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y+C+VDL  R+G L EA   I  MP EAD  +W ++L  C    D  LG  VA++++ LD
Sbjct: 572 YACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLELGESVAKKVLSLD 631

Query: 536 PENACAYIQLSSIFATSGEW-EKSSLIRDIMREKHVGKLPGCSWADGIAFNCWF 588
           P+   AYI LS+I+A  G+W EK ++ R +M  K V K+ GCSW D     C F
Sbjct: 632 PKAISAYIILSNIYAKLGKWVEKINVRRKLMSLK-VKKIRGCSWIDVNNKTCVF 684


>gi|125555425|gb|EAZ01031.1| hypothetical protein OsI_23065 [Oryza sativa Indica Group]
          Length = 671

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 210/693 (30%), Positives = 314/693 (45%), Gaps = 149/693 (21%)

Query: 6   DYLARLL-QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           D+LA LL +    HH  H  + +H   +K G L ST  + N LL  Y   G+  DA  +F
Sbjct: 3   DHLAALLLRGSGGHHHSH-PRAVHGAAVKLGCLASTY-LCNNLLLSYQARGHLADARGVF 60

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADL 118
           DEMPRRN  SW+ +I    +LG    +L LF  M       + N F+   L++G A+A  
Sbjct: 61  DEMPRRNVVSWSVLIVASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKD 120

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           A    G+Q+H+  +  G+D D  +  +LV++Y K                          
Sbjct: 121 AV--AGEQVHASAVKLGVDEDESVAGTLVDMYAK-------------------------- 152

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE----DTEALLLFHKMRRNGVL 234
                CG++  + R F  T   S + W SMI+  +++ +    DT A++LF KM    V 
Sbjct: 153 -----CGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDT-AIVLFKKMLVLKVW 206

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVG--------------------------- 267
              +T + +L        L  GKQVHG   K+G                           
Sbjct: 207 PTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRL 266

Query: 268 ---VIDDVIVASALLDTYSKRG----------------MPSD---------ACKLFSELK 299
              +  D    ++LL  Y++ G                MP D          C    +L+
Sbjct: 267 ACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLR 326

Query: 300 VY--------------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           V               DT+LLN ++TVY  CG I  ++ +F T+ NK  ISW +++    
Sbjct: 327 VVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYV 386

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           QN    EAL  F  M +  L    F + SV+ AC+  SSL  G Q+ +RV  +G+D D  
Sbjct: 387 QNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTS 446

Query: 406 ISTSLVDFYCKCGYD--ALALFNEMRNTG------------------------------- 432
           +  +LV  Y KCG    AL +FN  RN G                               
Sbjct: 447 VENALVTMYAKCGVVQVALKIFNSTRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEM 506

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           V P   TF  +LS+C   GLV EG ++F  MK +Y+++P++EHY+CMVDLFARAG  ++A
Sbjct: 507 VCPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDA 566

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
           +  I+ MP + D  +W ++L  C  HG+  LGR  A++++E+ PE+   YI LSSI A+ 
Sbjct: 567 MKFIDAMPCQPDQLVWEALLASCRVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHASI 626

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWADGIAFN 585
             W++ +  R ++  + + K  G S  D   F+
Sbjct: 627 DMWDEKARNRTLLDFQQLRKDVGSSQLDSQGFS 659



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 19/246 (7%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +++ I  +  +L++C+   S+  G Q+H   +K G+ + T  + N L+ MY +CG    A
Sbjct: 406 LESSIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDT-SVENALVTMYAKCGVVQVA 464

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA 116
           L +F+    R   SWNA+I  F + G++  ++QLF++M ++    +D+++  L+S  ++ 
Sbjct: 465 LKIFNSTRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRM 524

Query: 117 DLAA--LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFC 173
            L A   EY KQ+ +      L+      + +V+L+ + G F+ A + ++ M  +PD   
Sbjct: 525 GLVAEGCEYFKQMKTKY---NLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLV 581

Query: 174 LSALIS-----GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI---SNNEDTEALLLF 225
             AL++     G  + G+M   + +  +  D S  +  S I   I           LL F
Sbjct: 582 WEALLASCRVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHASIDMWDEKARNRTLLDF 641

Query: 226 HKMRRN 231
            ++R++
Sbjct: 642 QQLRKD 647


>gi|347954456|gb|AEP33728.1| chlororespiratory reduction 21, partial [Brassica oleracea]
          Length = 643

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 184/630 (29%), Positives = 304/630 (48%), Gaps = 107/630 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FDE+P RN  +WNA++ G++
Sbjct: 3   GRGVHGYVAKSG-LDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYV 61

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSHILVNGLDFDSV 141
           + G  E++++L   M ++      + +S    A A++  +E GK  H+  +VNGL+ D++
Sbjct: 62  QNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDNI 121

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           LG+S++N Y K G  + A  V + M   D    + LISGY   G + DA R         
Sbjct: 122 LGTSILNFYCKVGLIDYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIR--------- 172

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
                                 +   MR   +  D  TL++++S  +     + GK+V  
Sbjct: 173 ----------------------MCQLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQC 210

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC----- 316
           +  +     D+++ASA +D Y+K G   DA K+F      D IL NT++  Y+       
Sbjct: 211 YCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGE 270

Query: 317 ------------------------------GRIEDAKHIFRTMPNK----SLISWNSMIV 342
                                         G++++AK +F  M +     +++SW +M+ 
Sbjct: 271 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKEMFLQMQSSGIVPTIVSWTTMMN 330

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           GL  NG   EA+     M +  +R + FS+   +SACAN++SL  G  V   +    L S
Sbjct: 331 GLVXNGCSEEAIHYLRKMQESGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHS 390

Query: 403 DQI-ISTSLVDFYCKCG---------------------------------YDALALFNEM 428
             + I TSLVD Y KCG                                  +A+AL+  +
Sbjct: 391 SSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAMALYGSL 450

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488
            + G+KP  ITFT ILSAC+H G + +  + F  M  ++ + P +EHY  MVDL A AG 
Sbjct: 451 EDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLASAGE 510

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
             +A+ L+E+MP+E D  M  S+L  C       L   ++++++E +P+N+  Y+ +S+ 
Sbjct: 511 TEKALRLMEEMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPDNSGNYVTISNA 570

Query: 549 FATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +A  G W++   +R++M+ K + K PGCSW
Sbjct: 571 YAGEGSWDEVVKMREMMKAKGLKKQPGCSW 600



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 119/549 (21%), Positives = 219/549 (39%), Gaps = 149/549 (27%)

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           +G+ +H ++  +GLD    + SSL ++YGKCG  + A +V + + E +    +AL     
Sbjct: 2   FGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNAL----- 56

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
                                     + GY+ N  + EA+ L   MR  GV     T+++
Sbjct: 57  --------------------------MVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVST 90

Query: 243 VLSACSSLGFLEHGKQVHGHA-------------------CKVGVID------------D 271
            LSA +++G +E GK  H  A                   CKVG+ID            D
Sbjct: 91  CLSASANMGGVEEGKXSHALAVVNGLELDNILGTSILNFYCKVGLIDYAEMVFDRMIGKD 150

Query: 272 VIVASALLDTYSKRGMPSDA-------------------------------CKLFSELKV 300
           V+  + L+  Y ++G+  DA                                KL  E++ 
Sbjct: 151 VVTWNLLISGYVQQGLVEDAIRMCQLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQC 210

Query: 301 Y--------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
           Y        D +L +  + +Y+ CG I DAK +F +   K LI WN+++   +++G   E
Sbjct: 211 YCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGE 270

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL LF  M    +  +  +   +I +      ++  +++F ++   G+    +  T++++
Sbjct: 271 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKEMFLQMQSSGIVPTIVSWTTMMN 330

Query: 413 FYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDH--------------------- 449
                 C  +A+    +M+ +G++P + + T  LSAC +                     
Sbjct: 331 GLVXNGCSEEAIHYLRKMQESGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHS 390

Query: 450 ---------------CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
                          CG + + +K F     +  +  E+  Y+ M+  +A  G + EA+ 
Sbjct: 391 SSVSIETSLVDMYAKCGDISKAEKVF-----RRKLFSELPLYNAMISAYALYGNVEEAMA 445

Query: 495 L---IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA--YIQLSSIF 549
           L   +E M  + D   +++IL  C   GD     ++   M+       C   Y  +  + 
Sbjct: 446 LYGSLEDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLL 505

Query: 550 ATSGEWEKS 558
           A++GE EK+
Sbjct: 506 ASAGETEKA 514



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 25/188 (13%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++  + +S++ I   L+ MY +CG+ + A  +F    RR 
Sbjct: 364 LSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVF----RRK 419

Query: 72  CFS----WNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADL-AA 120
            FS    +NAMI  +   G+ E+++ L+       + P    F+ N+L +     D+  A
Sbjct: 420 LFSELPLYNAMISAYALYGNVEEAMALYGSLEDMGIKPDNITFT-NILSACNHAGDINQA 478

Query: 121 LE-YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
           +E +   +  H +   L+   +    +V+L    G+   A +++  M  EPD   + +L+
Sbjct: 479 IEIFSDMVSKHGVKPCLEHYGL----MVDLLASAGETEKALRLMEEMPYEPDARMIQSLL 534

Query: 179 SGYANCGK 186
              A C K
Sbjct: 535 ---ATCNK 539


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 184/609 (30%), Positives = 291/609 (47%), Gaps = 95/609 (15%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C+     H G+ +H H +  G L + L ++  LL MY++C    DA  +F  MP R+
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAG-LQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 72  CFSWNAMIEGFMKLGHKEKSL-QLFNVMPQKNDFSWN--MLISGFAK-ADLAALEYGKQI 127
             +WNAM+ G+   G    ++  L ++  Q +    N   L++     A   AL  G  +
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 128 HSHILVNGLDFDSVLGSSLVN--LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           H++ +   L  +    S L +  L G                       +AL+  YA CG
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLG-----------------------TALLDMYAKCG 287

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVL 244
            +  ARRVFD     + V W+++I G++  +  T+A LLF  M   G+     +++AS L
Sbjct: 288 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASAL 347

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+SL  L  G+Q+H    K GV  D+   ++LL  Y+K                    
Sbjct: 348 RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK-------------------- 387

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                       G I+ A  +F  M  K  +S+++++ G  QNG   EA  +F  M   +
Sbjct: 388 -----------AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACN 436

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           +  D  ++ S+I AC+++++L+ G      V I GL S+  I  +L+D Y KCG      
Sbjct: 437 VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSR 496

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +A ALF EM N G  P  +TF  +LSAC H G
Sbjct: 497 QVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 556

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV EG+ WF  M+  Y + P +EHY CMVDL +R G L+EA   I+ MP  ADV +W ++
Sbjct: 557 LVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVAL 616

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  + +  LG+KV+  + EL PE    ++ LS+I++ +G +++++ +R I + +   
Sbjct: 617 LGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFK 676

Query: 572 KLPGCSWAD 580
           K PGCSW +
Sbjct: 677 KSPGCSWIE 685



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 118/514 (22%), Positives = 222/514 (43%), Gaps = 74/514 (14%)

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE-----YGKQIHSHILVNGLDFDS 140
           GH  ++  LF+ +P  +  ++N LI  ++ +   A       Y + +   +  N   F  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            L +        CG        ++   + D F  +AL+  Y  C  + DA  +F      
Sbjct: 131 ALKACSALADHHCGR-AIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 201 SSVMWNSMISGYISNN--EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
             V WN+M++GY  +       A LL  +M+ + +  +ASTL ++L   +  G L  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT-MITVYSSCG 317
           VH +  +  +             +S R          S+ K+ D +LL T ++ +Y+ CG
Sbjct: 250 VHAYRIRACL-------------HSNRN---------SKSKLTDGVLLGTALLDMYAKCG 287

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVI 376
            +  A+ +F  MP ++ ++W+++I G        +A  LF  M    L  +   S+AS +
Sbjct: 288 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASAL 347

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNE------- 427
            ACA++  L +GEQ+ A +   G+ +D     SL+  Y K G    A+ALF+E       
Sbjct: 348 RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTV 407

Query: 428 ------------------------MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                                   M+   V+P   T  +++ AC H   ++ G+    ++
Sbjct: 408 SYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV 467

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
             +  +  E    + ++D++A+ G ++ +  +   MP   D+  W++++ G   +G  GL
Sbjct: 468 IIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAG---YGIHGL 522

Query: 524 GRKVAERMIELD----PENACAYIQLSSIFATSG 553
           G++     +E++    P +   +I L S  + SG
Sbjct: 523 GKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 556



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 161/377 (42%), Gaps = 78/377 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C +   + +G+QLH    K G+ ++ L   N LL MY + G    A+ LFDEM
Sbjct: 343 IASALRACASLDHLRMGEQLHALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEM 401

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGK 125
             ++  S++A++ G+++ G  E++  +F  M   N    +  M+    A + LAAL++G+
Sbjct: 402 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
             H  +++ GL  ++ + ++L+++Y KCG  + + QV NMM   D               
Sbjct: 462 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD--------------- 506

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                            V WN+MI+GY  +    EA  LF +M   G   D  T   +LS
Sbjct: 507 ----------------IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLS 550

Query: 246 ACSSLGFLEHGKQ-----VHGHA---------CKV------GVID-------------DV 272
           ACS  G +  GK       HG+          C V      G +D             DV
Sbjct: 551 ACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 610

Query: 273 IVASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI---- 325
            V  ALL     Y    +     ++  EL    T     +  +YS+ GR ++A  +    
Sbjct: 611 RVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQ 670

Query: 326 ----FRTMPNKSLISWN 338
               F+  P  S I  N
Sbjct: 671 KVQGFKKSPGCSWIEIN 687


>gi|334185448|ref|NP_001078182.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273297|sp|Q9LHN5.1|PP242_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g18840
 gi|9294693|dbj|BAB03093.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642633|gb|AEE76154.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 193/636 (30%), Positives = 315/636 (49%), Gaps = 91/636 (14%)

Query: 28  HLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           H+  +K G   STL    +N+L+ +Y + G   +A  +FDEM  RN +SWNA+I  ++K 
Sbjct: 11  HIRSIKSG---STLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAYVKF 67

Query: 86  GHKEKSLQLFNVMPQKNDF-SWNMLISGFAKAD--------------------------- 117
            + +++ +LF     + D  ++N L+SGFAK D                           
Sbjct: 68  NNVKEARELFESDNCERDLITYNTLLSGFAKTDGCESEAIEMFGEMHRKEKDDIWIDDFT 127

Query: 118 ----------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN--M 165
                     L  + YG+Q+H  ++  G D      SSL+++Y KCG F     + N   
Sbjct: 128 VTTMVKLSAKLTNVFYGEQLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSC 187

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLL 224
           ++  D    +A+I+ Y   G ++ A  VF R  +   ++ WN++I+GY  N  + EAL +
Sbjct: 188 VEFVDSVARNAMIAAYCREGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGYEEEALKM 247

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
              M  NG+  D  +  +VL+  SSL  L+ GK+VH    K G   +  V+S ++D Y K
Sbjct: 248 AVSMEENGLKWDEHSFGAVLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCK 307

Query: 285 RG---MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
            G       A  L+    +Y     ++MI  YSS G++ +AK +F ++  K+L+ W +M 
Sbjct: 308 CGNMKYAESAHLLYGFGNLYSA---SSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMF 364

Query: 342 VG---LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           +G   L Q  S +E    F   N+ +   D   + SV+ AC+  + +E G+++       
Sbjct: 365 LGYLNLRQPDSVLELARAFI-ANETNTP-DSLVMVSVLGACSLQAYMEPGKEIHGHSLRT 422

Query: 399 GLDSDQIISTSLVDFYCKCG-------------------YDALAL--------------F 425
           G+  D+ + T+ VD Y KCG                   Y+A+                F
Sbjct: 423 GILMDKKLVTAFVDMYSKCGNVEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHF 482

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            +M   G KP  ITF A+LSAC H GLV EG+K+F +M   Y+I PE  HY+CM+DL+ +
Sbjct: 483 EDMTEGGFKPDEITFMALLSACRHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGK 542

Query: 486 AGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544
           A  L++A+ L+E +   E D  +  + L  C  + +  L ++V E+++ ++  N   YIQ
Sbjct: 543 AYRLDKAIELMEGIDQVEKDAVILGAFLNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQ 602

Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +++ +A+SG W++   IR  MR K +    GCSWA+
Sbjct: 603 IANAYASSGRWDEMQRIRHQMRGKELEIFSGCSWAN 638



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 111/273 (40%), Gaps = 66/273 (24%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN----------------------- 56
           S+ +GK++H   LK G  ++   +++ ++ +Y +CGN                       
Sbjct: 275 SLKIGKEVHARVLKNGSYSNKF-VSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSASSMI 333

Query: 57  --------PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN--VMPQKNDFSW 106
                     +A  LFD +  +N   W AM  G++ L   +  L+L    +  + N    
Sbjct: 334 VGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTPDS 393

Query: 107 NMLISGFAKADLAA-LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 165
            +++S      L A +E GK+IH H L  G+  D  L ++ V++Y KCG+   A ++   
Sbjct: 394 LVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNVEYAERIF-- 451

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
                                        D + +  +VM+N+MI+G   +  + ++   F
Sbjct: 452 -----------------------------DSSFERDTVMYNAMIAGCAHHGHEAKSFQHF 482

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
             M   G   D  T  ++LSAC   G +  G++
Sbjct: 483 EDMTEGGFKPDEITFMALLSACRHRGLVLEGEK 515



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 8/179 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C+    +  GK++H H L+ GIL     +    + MY +CGN   A  +FD  
Sbjct: 396 MVSVLGACSLQAYMEPGKEIHGHSLRTGILMDK-KLVTAFVDMYSKCGNVEYAERIFDSS 454

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             R+   +NAMI G    GH+ KS Q F  M +     ++ ++  L+S      L  LE 
Sbjct: 455 FERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGL-VLEG 513

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK--EPDDFCLSALISG 180
            K   S I    +  ++   + +++LYGK    + A +++  +   E D   L A ++ 
Sbjct: 514 EKYFKSMIEAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGIDQVEKDAVILGAFLNA 572


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 181/623 (29%), Positives = 296/623 (47%), Gaps = 107/623 (17%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R+D    +  L  C     + +G+ +H      G+    L + N L+ MY +CG    
Sbjct: 36  DLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVL-LTNSLIDMYCKCGRIDW 94

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK 115
           A L+F+     +  SWN++I G++++G  ++ L+L   M +     N ++    +     
Sbjct: 95  ARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGS 154

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
              +++E GK +H   +  GLD D V+G+                               
Sbjct: 155 NFSSSIECGKMLHGCAVKLGLDLDVVVGT------------------------------- 183

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI-----SNNEDTEALLLFHKMRR 230
           AL+  YA  G + DA ++F    D + VM+N+MI+G++     ++    EA+ LF +M+ 
Sbjct: 184 ALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQS 243

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
            G+     T +S+L ACS++   E GKQ+H    K  +  D  + +AL++          
Sbjct: 244 RGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVE---------- 293

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
                                +YS  G IED    F + P   ++SW S+IVG  QNG  
Sbjct: 294 ---------------------LYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQF 332

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
              L LF  +     + D+F+++ ++SACAN+++++ GEQ+ A     G+ +  II  S 
Sbjct: 333 EGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQ 392

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           +  Y KCG                                  +A+ LF  M+ +G+ P  
Sbjct: 393 ICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNH 452

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           ITF  +L AC H GLV+EG ++F+ MK  + I P ++H +C+VDL  RAG L EA + I 
Sbjct: 453 ITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIM 512

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
              FE D  MW S+L  C  H     G++VAER+IEL+PE A +Y+ L +I+  +G    
Sbjct: 513 DSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMP 572

Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
           ++ IR++M+++ V K PG SW +
Sbjct: 573 ATEIRNLMKDRGVKKEPGLSWIE 595



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 217/509 (42%), Gaps = 142/509 (27%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAA 120
           MP+RN  SWN++I G+ ++G   + + LF      ++   K  FS  + + G        
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCG----RTLD 56

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L  G+ IH+ I V+GL    +L +SL+++Y KCG  + A  V     E D    ++LI+G
Sbjct: 57  LRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAG 116

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y   G  ND                              E L L  KM R+G+  ++  L
Sbjct: 117 YVRIGS-ND------------------------------EMLRLLVKMLRHGLNLNSYAL 145

Query: 241 ASVLSACSS--LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
            S L AC S     +E GK +HG A K+G+  DV+V +ALLDTY+K G   DA K     
Sbjct: 146 GSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATK----- 200

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI-----EA 353
                                     IF+ MP+ +++ +N+MI G  Q  +       EA
Sbjct: 201 --------------------------IFKLMPDPNVVMYNAMIAGFLQMETMADEFANEA 234

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           + LF  M    ++  +F+ +S++ AC+ I + E G+Q+ A++    L SD+ I  +LV+ 
Sbjct: 235 MYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVEL 294

Query: 414 YC---------KCGYD------------------------ALALFNEMRNTGVKPTIITF 440
           Y          KC +                          L LF+E+  +G KP   T 
Sbjct: 295 YSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTI 354

Query: 441 TAILSACDHCGLVKEGQKW----------------------------FDA--MKWQYHID 470
           + +LSAC +   VK G++                              D+  M ++   +
Sbjct: 355 SIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKN 414

Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           P+I  +S M+   A+ GC  EAV+L E M
Sbjct: 415 PDIVSWSVMISSNAQHGCAKEAVDLFELM 443


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 184/609 (30%), Positives = 290/609 (47%), Gaps = 95/609 (15%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C+     H G+ +H H +  G L + L ++  LL MY++C    DA  +F  MP R+
Sbjct: 17  LKACSALADHHCGRAIHRHAIHAG-LQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 75

Query: 72  CFSWNAMIEGFMKLGHKEKSL-QLFNVMPQKNDFSWN--MLISGFAK-ADLAALEYGKQI 127
             +WNAM+ G+   G    ++  L ++  Q +    N   L++     A   AL  G  +
Sbjct: 76  LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 135

Query: 128 HSHILVNGLDFDSVLGSSLVN--LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           H++ +   L  +    S L +  L G                       +AL+  YA CG
Sbjct: 136 HAYCIRACLHPNRNSKSKLTDGVLLG-----------------------TALLDMYAKCG 172

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVL 244
            +  ARRVFD     + V W+++I G++  +  T+A LLF  M   G+     +++AS L
Sbjct: 173 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASAL 232

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+SL  L  G+Q+H    K GV  D+   ++LL  Y+K                    
Sbjct: 233 RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK-------------------- 272

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                       G I+ A  +F  M  K  +S+++++ G  QNG   EA  +F  M   +
Sbjct: 273 -----------AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACN 321

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           +  D  ++ S+I AC+++++L+ G      V I GL S+  I  +L+D Y KCG      
Sbjct: 322 VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSR 381

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +A ALF EM N G  P  +TF  +LSAC H G
Sbjct: 382 QVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 441

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV EG+ WF  M   Y + P +EHY CMVDL +R G L+EA   I+ MP  ADV +W ++
Sbjct: 442 LVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVAL 501

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  + +  LG+KV+  + EL PE    ++ LS+I++ +G +++++ +R I + +   
Sbjct: 502 LGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFK 561

Query: 572 KLPGCSWAD 580
           K PGCSW +
Sbjct: 562 KSPGCSWIE 570



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 161/377 (42%), Gaps = 78/377 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C +   + +G+QLH    K G+ ++ L   N LL MY + G    A+ LFDEM
Sbjct: 228 IASALRACASLDHLRMGEQLHALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEM 286

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGK 125
             ++  S++A++ G+++ G  E++  +F  M   N    +  M+    A + LAAL++G+
Sbjct: 287 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
             H  +++ GL  ++ + ++L+++Y KCG  + + QV NMM   D               
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD--------------- 391

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                            V WN+MI+GY  +    EA  LF +M   G   D  T   +LS
Sbjct: 392 ----------------IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLS 435

Query: 246 ACSSLGFLEHGK---QVHGHA-----------CKV------GVID-------------DV 272
           ACS  G +  GK    V GH            C V      G +D             DV
Sbjct: 436 ACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 495

Query: 273 IVASALLD---TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI---- 325
            V  ALL     Y    +     ++  EL    T     +  +YS+ GR ++A  +    
Sbjct: 496 RVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQ 555

Query: 326 ----FRTMPNKSLISWN 338
               F+  P  S I  N
Sbjct: 556 KVQGFKKSPGCSWIEIN 572



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 142/311 (45%), Gaps = 25/311 (8%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M R+ V  +  T    L ACS+L     G+ +H HA   G+  D+ V++ALLD Y K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA--------KHIFRTMPNKSLISWNS 339
             DA  +F+ +   D +  N M+  Y+  G    A          + R  PN S +   +
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV--A 118

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL-----ELGEQVFAR 394
           ++  L+Q G+  +   +     +  L  ++ S + +       ++L     + G  ++AR
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178

Query: 395 VTIIGLDS-DQIISTSLVDFYCKCGY--DALALFNEMRNTG---VKPTIITFTAILSACD 448
                + + +++  ++L+  +  C     A  LF  M   G   + PT I   + L AC 
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSI--ASALRACA 236

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
               ++ G++   A+  +  +  ++   + ++ ++A+AG +++A+ L ++M  + D   +
Sbjct: 237 SLDHLRMGEQ-LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSY 294

Query: 509 SSILRGCVAHG 519
           S+++ G V +G
Sbjct: 295 SALVSGYVQNG 305


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 173/603 (28%), Positives = 290/603 (48%), Gaps = 97/603 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++C    S+  G+ LH + ++ GI N ++ + N +LQMY  CG+  DA  LFDEM   
Sbjct: 87  LFEACRELRSLSHGRLLH-NRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDL 145

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           N  S   MI  + + G  +K++ LF+ M +  D   + + +   K+  +  AL+ G+QIH
Sbjct: 146 NAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIH 205

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           +H++  GL  ++ + + +VN+Y KC                               G + 
Sbjct: 206 AHVIRAGLCSNASIETGIVNMYVKC-------------------------------GWLV 234

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            A+RVFD+      V W  ++ GY       +AL LF  +   GV  D+   + VL AC+
Sbjct: 235 GAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACA 294

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           SL  L  GKQ+H    K+G+  +V V + L+D Y K      AC+ F E++  + +  + 
Sbjct: 295 SLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSA 354

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +I+ Y    + E+A   F+++ +K+ +  NS                             
Sbjct: 355 IISGYCQMSQFEEAVKTFKSLRSKNAVVLNS----------------------------- 385

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
            F+  S+  AC+ ++   +G QV A      L   Q   ++L+  Y KCG          
Sbjct: 386 -FTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFE 444

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +AL LF +M + G+KP  +TF A+L+AC H GLV++
Sbjct: 445 SMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQ 504

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G+ + D M  +Y++ P I+HY CM+D++AR+G L+EA+  ++ MPFE D   W   L GC
Sbjct: 505 GKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGC 564

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             H +  LG+   E + +LDPE+   Y+   +++  +G+WE+++ +  +M E+ + K   
Sbjct: 565 WTHKNLELGKIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELS 624

Query: 576 CSW 578
           CSW
Sbjct: 625 CSW 627



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 132/329 (40%), Gaps = 68/329 (20%)

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASAL 278
           EA   F +M + GV     +   +  AC  L  L HG+ +H    ++G+ +  V++ + +
Sbjct: 64  EAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRM-RMGIENPSVLLQNCV 122

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L  Y + G   DA KLF E+   + +   TMI+ Y+  G ++ A  +F  M         
Sbjct: 123 LQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRM--------- 173

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
                L     P  ++                   +++ +  N  +L++G Q+ A V   
Sbjct: 174 -----LESGDKPPSSM-----------------YTTLLKSLVNPRALDIGRQIHAHVIRA 211

Query: 399 GLDSDQIISTSLVDFYCKCGY---------------------------------DALALF 425
           GL S+  I T +V+ Y KCG+                                 DAL LF
Sbjct: 212 GLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLF 271

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            ++   GV+     F+ +L AC     ++ G++   A   +  ++ E+   + +VD + +
Sbjct: 272 VDLITEGVEWDSFVFSVVLKACASLEELRFGKQ-IHACVAKLGLECEVSVGTPLVDFYIK 330

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRG 514
                 A    +++    DV  WS+I+ G
Sbjct: 331 CSSFESACRAFQEIREPNDVS-WSAIISG 358



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N  +V LS++G   EA + F  M+K  + +  +S   +  AC  + SL  G  +  R+ +
Sbjct: 50  NLHLVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRM 109

Query: 398 IGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
              +   ++   ++  YC+CG   DA  LF+EM +       ++ T ++SA    GL+ +
Sbjct: 110 GIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNA----VSRTTMISAYAEQGLLDK 165

Query: 456 GQKWFDAM 463
               F  M
Sbjct: 166 AVGLFSRM 173


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 177/588 (30%), Positives = 281/588 (47%), Gaps = 66/588 (11%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K+LH +++  G+ N    ++  L    +   +   A  +FD++     F WN +I G  +
Sbjct: 5   KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQ 64

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVL 142
                 ++  +           N+      KA   + AL  G+Q+H+HI   GL  D  +
Sbjct: 65  SDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFV 124

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
            +SL++LY                               A CG +  AR VFD       
Sbjct: 125 SNSLIHLY-------------------------------AACGNLCYARSVFDEMVVKDV 153

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V WNS+I GY   N   + L LF  M+  GV  D  T+  V+SAC+ LG       +  +
Sbjct: 154 VSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRY 213

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
                +  DV + + L+D + +RG    A K+F  +KV + + +N MI  Y+    I  A
Sbjct: 214 IEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSA 273

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
           + IF  +P K LISW+SMI G SQ     +AL++F  M +  ++ D   +ASV+S+CA++
Sbjct: 274 RKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHL 333

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNT--------- 431
            +L+LG+ V   V    + +D I+  SL+D Y KCG   +AL +F EM+           
Sbjct: 334 GALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSII 393

Query: 432 ----------------------GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                                 G +P  +TF  +L AC +  LV+EG   F++MK  Y +
Sbjct: 394 IGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSL 453

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           +P+++HY C+VDL  RAG L +A+  I +MP + D  +W  +L  C  HGD  +   V +
Sbjct: 454 EPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTK 513

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           ++ EL+P N+  Y  LS+ +A++  W ++  +R  M +  V K PGCS
Sbjct: 514 KLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCS 561



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 247/498 (49%), Gaps = 50/498 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C   ++++ G+Q+H H  K G+L S + ++N L+ +Y  CGN   A  +FDEM  +
Sbjct: 93  ILKACARINALNEGEQMHNHITKLGLL-SDIFVSNSLIHLYAACGNLCYARSVFDEMVVK 151

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK-ADLAALEYGK 125
           +  SWN++I G+ +    +  L LF +M  +    +  +   ++S   +  D +  +Y  
Sbjct: 152 DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADY-- 209

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +  +I    ++ D  LG++LV+ +G+ G   SA +V   MK  +   ++A+I+ YA   
Sbjct: 210 -MVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQ 268

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            +  AR++FD+      + W+SMISGY   N  ++AL +F +M+R  V  DA  +ASV+S
Sbjct: 269 DIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVS 328

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           +C+ LG L+ GK VH +  +  +  D I+ ++L+D Y K G   +A ++F E+K  DT  
Sbjct: 329 SCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDT-- 386

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                        +SWNS+I+GL+ NG   E+L+LF  M     
Sbjct: 387 -----------------------------LSWNSIIIGLANNGFEKESLNLFQAMLTEGF 417

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGY--DAL 422
           R +  +   V+ ACAN   +E G   F  +  +  L+        +VD   + G    AL
Sbjct: 418 RPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKAL 477

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVD 481
               EM    + P  + +  +L +C+  G V   +      K    ++P    +Y+ + +
Sbjct: 478 RFITEM---PIDPDPVVWRILLGSCNTHGDVAIAEI---VTKKLNELEPSNSGNYTLLSN 531

Query: 482 LFARAGCLNEAVNLIEQM 499
            +A A   +EA+N+ + M
Sbjct: 532 AYASAHRWSEAMNVRQCM 549


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 159/489 (32%), Positives = 259/489 (52%), Gaps = 66/489 (13%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK++H HI+  G+D    L ++L+N+YGKC                              
Sbjct: 22  GKKLHCHIIKTGIDQCKSLSNNLINMYGKC------------------------------ 51

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLAS 242
            G + DA  +F++      + W S+++     N     L +F  M +++G+  D    A 
Sbjct: 52  -GLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFAC 110

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           ++ AC+ LG ++ GKQVH       V DD +V S+L+D Y+K G+P     +F  +   +
Sbjct: 111 LVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKN 170

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
           +I    MI+ Y+  GR  DA  +F+ MP K+L+SW ++I GL Q+G+ +++  LF  M  
Sbjct: 171 SISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRS 230

Query: 363 LDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---- 417
             + + D F L+S+I A AN++ L LG+Q+   V ++G +S   +S +LVD Y KC    
Sbjct: 231 KGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVL 290

Query: 418 -----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +AL+L+N M +TG+KP  +TF  ++ AC 
Sbjct: 291 AAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACS 350

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV +G+ +F++M   Y I+P ++HY+C++DL +R+G L EA NLI+ MPF+ D   W
Sbjct: 351 HVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATW 410

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           +++L  C  H +  +G +VA+ ++ L PE+   YI LS+I+A++  WE  S +R +M   
Sbjct: 411 AALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAM 470

Query: 569 HVGKLPGCS 577
            V K PG S
Sbjct: 471 EVKKEPGYS 479



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 227/450 (50%), Gaps = 42/450 (9%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L   LQ+C  H S  +GK+LH H +K GI +    ++N L+ MY +CG   DAL LF++
Sbjct: 5   HLVYQLQACARHQSPPIGKKLHCHIIKTGI-DQCKSLSNNLINMYGKCGLIQDALNLFNQ 63

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAKADLAAL 121
           +P R+  SW +++    +      +L +F  M      Q + + +  L+   A A L A+
Sbjct: 64  LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVK--ACAILGAM 121

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           + GKQ+H+  +V+ +  D V+ SSLV++Y KCG  +    V + +   +    +A+ISGY
Sbjct: 122 KQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGY 181

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTL 240
           A  G+  DA ++F +    + + W ++ISG + +    ++  LF +MR  G+ + D   L
Sbjct: 182 AQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFIL 241

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +S++ A ++L  L  GKQ+H     +G    + V++AL+D Y+K                
Sbjct: 242 SSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAK---------------- 285

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          C  +  AK IF  M  + ++SW S+IVG +Q+G   EAL L+  M
Sbjct: 286 ---------------CSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRM 330

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGY 419
               L+ ++ +   +I AC+++  +  G   F + +   G++      T L+D   + G+
Sbjct: 331 LSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGH 390

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDH 449
              A  N ++    KP   T+ A+LSAC+H
Sbjct: 391 LEEAE-NLIKAMPFKPDEATWAALLSACNH 419



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 71/284 (25%)

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           S L   L AC+       GK++H H  K G+     +++ L++ Y K G+  DA  LF++
Sbjct: 4   SHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQ 63

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           L                               P++  ISW S++   +Q   P   L +F
Sbjct: 64  L-------------------------------PHRDPISWASILTANNQANLPHLTLSMF 92

Query: 358 CNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
             M K D L+ D +  A ++ ACA + +++ G+QV A   +  +  D ++ +SLVD Y K
Sbjct: 93  PAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAK 152

Query: 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
           CG                P I                  G+  FD++  +  I      +
Sbjct: 153 CGL---------------PDI------------------GRVVFDSISSKNSIS-----W 174

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
           + M+  +A++G   +A+ L ++MP + ++  W++++ G V  G+
Sbjct: 175 TAMISGYAQSGRKLDAIQLFQKMPVK-NLLSWTALISGLVQSGN 217


>gi|449456490|ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 202/654 (30%), Positives = 304/654 (46%), Gaps = 106/654 (16%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           NS +   N  +  ++R G+   A  LF+EMP R+  SWN MI G+ K G   ++L L + 
Sbjct: 34  NSNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASE 93

Query: 98  MP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
           M     + N+ +++ L+S  A +  ++   GKQ H  +L +GL     +GS+LV  Y   
Sbjct: 94  MHCNNVKLNETTFSSLLSICAHSGCSS--EGKQFHCLVLKSGLQIFERVGSALVYFYANI 151

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
            D + A QV + + + +D     L+ GY  C  M+DA  +F +      V W +MIS Y 
Sbjct: 152 NDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYA 211

Query: 214 SNNEDTE-ALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
            +  + +  L LF  MR NG +E +  T  SV+ AC  + +L  GK VHG   K G   D
Sbjct: 212 RSEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFD 271

Query: 272 VIVASALLDTYSK-------------------------------RGMPSDACKLFSELKV 300
             V SAL+  Y +                                G  +DA ++F +L+ 
Sbjct: 272 HSVCSALILFYCQCEAIDNAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLRE 331

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL-------------------------- 334
            + +  N M+  Y++ GRIE +K +F  M +K+                           
Sbjct: 332 KNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKLFESV 391

Query: 335 ------ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
                 ++WNSMI G  QN     AL L+  M +  +   + + +++  AC  +  ++LG
Sbjct: 392 KSEGDPVTWNSMISGCIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLG 451

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDA------------------------- 421
           + +         DS+  + TSL+D Y KCG  YDA                         
Sbjct: 452 QALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCFPNVAAFTALINGYVHH 511

Query: 422 ------LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
                  ++F+EM    V P   T   ILSAC   G+VKEG   F +M+  Y + P +EH
Sbjct: 512 GLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTLEH 571

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y+C+VDL  R+G L EA   I  MP EAD  +W ++L  C    D  LG  VA++++ LD
Sbjct: 572 YACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLELGESVAKKVLSLD 631

Query: 536 PENACAYIQLSSIFATSGEW-EKSSLIRDIMREKHVGKLPGCSWADGIAFNCWF 588
           P+   AYI LS+I+A  G+W EK ++ R +M  K V K+ GCSW D     C F
Sbjct: 632 PKAISAYIILSNIYAKLGKWVEKINVRRQLMSLK-VKKIRGCSWIDVNNKTCVF 684


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 183/596 (30%), Positives = 294/596 (49%), Gaps = 109/596 (18%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDEMPRRNCFSWNAMIEGFMK 84
           QLH H LK     + + I    L MYM+C N +D +  LF+ +P  N  S+NA+I G+ +
Sbjct: 232 QLHGHALKTD-FGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYAR 290

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNML-ISGFAKA------DLAALEYGKQIHSHILVNGLD 137
                ++L +F ++ QK+    + + +SG  +A      DL  L+          V+GL 
Sbjct: 291 SDKGIEALGMFRLL-QKSGLGLDEVSLSGAXRACAVIKGDLEGLQ----------VHGLS 339

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
             S+  S++            AN +L+M               Y  CG + +A  VF+  
Sbjct: 340 MKSLCQSNIC----------VANAILDM---------------YGKCGALVEACLVFEEM 374

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
               +V WN++I+ +  N  + + L LF  M ++G+  D  T  SVL AC+    L  G 
Sbjct: 375 VSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGM 434

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           ++H    K  +  D  V  AL+D YSK                               CG
Sbjct: 435 EIHNRIIKSRMGLDSFVGIALIDMYSK-------------------------------CG 463

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            +E A+ +   +  ++++SWN++I G S      EA   F  M ++ +  D F+ A+++ 
Sbjct: 464 MMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILD 523

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------- 418
            CAN+ ++ELG+Q+ A++    L SD  IS++LVD Y KCG                   
Sbjct: 524 TCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVT 583

Query: 419 --------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                          +AL +F  M+   VKP   TF A+L AC H GLV++G  +F +M 
Sbjct: 584 WNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSML 643

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             Y +DP++EHYSC+VD+  R+G +++A+ LIE MPFEAD  +W ++L  C  HG+  + 
Sbjct: 644 SNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVA 703

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            K A  +++L+PE++ AY+ LS+I+A +G W + + +R +MR   + K PGCSW +
Sbjct: 704 EKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIE 759



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 151/603 (25%), Positives = 261/603 (43%), Gaps = 109/603 (18%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T+    + + Q C+   ++  GKQ H   +       T+ + N L+QMY++C +   A  
Sbjct: 40  TKKKTFSHIFQECSDRKALCPGKQAHARMILTE-FKPTVFVTNCLIQMYIKCSDLGFAFK 98

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-------DFSWNMLISGFAK 115
           +FD MP+R+  SWNAM+ G+   G    + +LF+ MP          DF    + + F +
Sbjct: 99  VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDR 158

Query: 116 ADLA-------ALE---YGKQIHSHILVNGLDFDSVLGSSLVNLYGKC----GDFNSANQ 161
              A       +LE    G QIH   +  G D D V GS+L+++Y KC     D     +
Sbjct: 159 TTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLE 218

Query: 162 VLNMMKEP-------------DDFCLSALISG-----YANCGKMND-ARRVFDRTTDTSS 202
           +   M++               DF    +I       Y  C  ++D + ++F+   + + 
Sbjct: 219 LFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNL 278

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
             +N++I GY  +++  EAL +F  ++++G+  D  +L+    AC+ +     G QVHG 
Sbjct: 279 QSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGL 338

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           + K     ++ VA+A+LD Y K G   +AC +F E                         
Sbjct: 339 SMKSLCQSNICVANAILDMYGKCGALVEACLVFEE------------------------- 373

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
                 M ++  +SWN++I    QNG+  + L LF  M +  +  D+F+  SV+ ACA  
Sbjct: 374 ------MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGW 427

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDALA----------- 423
            +L  G ++  R+    +  D  +  +L+D Y KCG        +D LA           
Sbjct: 428 QALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAII 487

Query: 424 --------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYH 468
                          F++M   GV P   T+  IL  C +   V+ G++     +K +  
Sbjct: 488 SGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQ 547

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
            D  I   S +VD++++ G + +   + E+ P   D   W++++ G   HG      K+ 
Sbjct: 548 SDAYIS--STLVDMYSKCGNMQDFQLIFEKAP-NRDFVTWNAMVCGYAQHGLGEEALKIF 604

Query: 529 ERM 531
           E M
Sbjct: 605 EYM 607



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 11/178 (6%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L +C    ++ +GKQ+H   +KK  L S   I++ L+ MY +CGN  D  L+F++ P
Sbjct: 519 ATILDTCANLVTVELGKQIHAQIIKKE-LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 577

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALE 122
            R+  +WNAM+ G+ + G  E++L++F      NV P    F   +   G        L 
Sbjct: 578 NRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLH 637

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALIS 179
           Y    HS +   GLD      S +V++ G+ G  + A +++  M  E D      L+S
Sbjct: 638 Y---FHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 692


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 189/642 (29%), Positives = 314/642 (48%), Gaps = 75/642 (11%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  +  ++ LL SC    S+  G+QLH H +  G     + +  +L+  Y       DA 
Sbjct: 97  DLIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPI-LVPKLVTFYSAFNLLVDAH 155

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
           ++ +     + F WN +I  +++ G  +K+L  +  M +K     N       KA  +  
Sbjct: 156 VITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEEL 215

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L +GK++H  I  + + +  ++ ++L+++YGKCG    A  + + + E D    +++IS
Sbjct: 216 DLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMIS 275

Query: 180 GYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
            YA+ G  N+A  +F        + + ++WN++  GY+       AL L  +MR+ G   
Sbjct: 276 VYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHL 335

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D+  L   L ACS +G  + GK++H  A +                         +C  F
Sbjct: 336 DSVALIIGLGACSHIGDAKLGKEIHSFAIR-------------------------SC--F 368

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            E+   DT+  N +IT+YS C  ++ A  +F+ M  KSLI+WNS+I G        EA  
Sbjct: 369 GEV---DTVK-NALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASF 424

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII-STSLVDFY 414
           L   M    +  +  ++ASV+  CA +++L+ G++    +T      D ++   +LVD Y
Sbjct: 425 LLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMY 484

Query: 415 CKCG--------YD-------------------------ALALFNEMRNTGVKPTIITFT 441
            + G        +D                         AL LF EM N  +KP  IT  
Sbjct: 485 ARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMI 544

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           A+LSAC H GLV +GQ  F+ M+  Y + P +EH++CM DLF RAG LN+A  +I  MP+
Sbjct: 545 AVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPY 604

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           +    MW++++  C  H +  +G   AE+++E+ PEN   Y+ +++++A +G W K + +
Sbjct: 605 KPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKV 664

Query: 562 RDIMREKHVGKLPGCSWAD-GIAFNCWFLDTMFLQLANFDEI 602
           R  MR+  V K PGC+W D G  F+ + +D      AN DEI
Sbjct: 665 RIFMRDLGVRKAPGCAWVDVGTGFSPFLVDDT--SNANADEI 704


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/607 (28%), Positives = 286/607 (47%), Gaps = 98/607 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A   +SC     ++ G+QLH H +K    +S   +   ++ +Y +  + TDA   F  +P
Sbjct: 254 ASAFRSCAAMSCLNTGRQLHAHAIKNK-FSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQ 126
                + NAM+ G ++ G   +++ LF  M + +     + +SG   A A+      G+Q
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 372

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H   + +G D D  + +++++LYGKC     A  +   MK+ D                
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKD---------------- 416

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                          SV WN++I+    N    + +L F++M R G+  D  T  SVL A
Sbjct: 417 ---------------SVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKA 461

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C++L  LE+G  VH    K G+  D  VAS ++D Y K                      
Sbjct: 462 CAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCK---------------------- 499

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG I++A+ +   +  + ++SWN+++ G S N    EA   F  M  + L+
Sbjct: 500 ---------CGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLK 550

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D F+ A+V+  CAN++++ELG+Q+  ++    +  D+ IS++LVD Y KCG        
Sbjct: 551 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 610

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL +F  M+   V P   TF A+L AC H GL 
Sbjct: 611 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 670

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G ++F  M   Y ++P++EH++CMVD+  R+    EAV  I  MPF+AD  +W ++L 
Sbjct: 671 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 730

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C    D  +    A  ++ LDP+++  YI LS+++A SG+W   S  R ++++  + K 
Sbjct: 731 ICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKE 790

Query: 574 PGCSWAD 580
           PGCSW +
Sbjct: 791 PGCSWIE 797



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 142/558 (25%), Positives = 233/558 (41%), Gaps = 130/558 (23%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           ++N LLQMY RC     A  +FD MPRR+  SWN M+  +   G    ++ LF+ MP  +
Sbjct: 54  VSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPD 113

Query: 103 DFSWNMLISGFAK---------------------------------ADLAALEYGKQIHS 129
             SWN L+SG+ +                                 + L  L  G Q+H+
Sbjct: 114 VVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHA 173

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
             +  GL+ D   GS+LV++YGK                               C  ++D
Sbjct: 174 LAVKTGLEIDVRTGSALVDMYGK-------------------------------CRSLDD 202

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A   F    + + V W + I+G + N +    L LF +M+R G+     + AS   +C++
Sbjct: 203 ALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAA 262

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           +  L  G+Q+H HA K     D +V +A++D Y+K                         
Sbjct: 263 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK------------------------- 297

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                    + DA+  F  +PN ++ + N+M+VGL + G  IEA+ LF  M +  +R D 
Sbjct: 298 ------ANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDV 351

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            SL+ V SACA       G+QV       G D D  ++ +++D Y KC            
Sbjct: 352 VSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQG 411

Query: 419 ---------------------YDALAL-FNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                YD   L FNEM   G+KP   T+ ++L AC     ++ G
Sbjct: 412 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG 471

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
               D +  +  +  +    S +VD++ + G ++EA  L +++  +  V  W++IL G  
Sbjct: 472 LMVHDKV-IKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNAILSGFS 529

Query: 517 AHGDKGLGRKVAERMIEL 534
            + +    +K    M+++
Sbjct: 530 LNKESEEAQKFFSEMLDM 547



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 186/423 (43%), Gaps = 66/423 (15%)

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            ++V+G    + + + L+ +Y +C     A +V + M   D    + +++ Y++ G ++ 
Sbjct: 42  RMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 101

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A  +FD   D   V WN+++SGY       E++ LF +M R GV  D +T A +L +CS+
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  L  G QVH  A K G+  DV   SAL+D Y K                         
Sbjct: 162 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK------------------------- 196

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                 C  ++DA   F  MP ++ +SW + I G  QN   +  L+LF  M +L L + +
Sbjct: 197 ------CRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQ 250

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------ 417
            S AS   +CA +S L  G Q+ A        SD+++ T++VD Y K             
Sbjct: 251 PSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFG 310

Query: 418 ---------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                G +A+ LF  M  + ++  +++ + + SAC       +G
Sbjct: 311 LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQG 370

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
           Q+    +  +   D +I   + ++DL+ +   L EA  + + M  + D   W++I+    
Sbjct: 371 QQ-VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALE 428

Query: 517 AHG 519
            +G
Sbjct: 429 QNG 431



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 140/325 (43%), Gaps = 45/325 (13%)

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G +    V++ LL  Y++    + A ++F  +   DT+  NTM+T YS  G I  A  +F
Sbjct: 47  GFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             MP+  ++SWN+++ G  Q G   E++DLF  M +  +  D+ + A ++ +C+ +  L 
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------------- 418
           LG QV A     GL+ D    ++LVD Y KC                             
Sbjct: 167 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCV 226

Query: 419 -----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPE 472
                   L LF EM+  G+  +  ++ +   +C     +  G++    A+K ++  D  
Sbjct: 227 QNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV 286

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           +   + +VD++A+A  L +A      +P    E    M   ++R  +     GL + +  
Sbjct: 287 VG--TAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR 344

Query: 530 RMIELDPENACAYIQLSSIFATSGE 554
             I  D       + LS +F+   E
Sbjct: 345 SSIRFD------VVSLSGVFSACAE 363


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/607 (28%), Positives = 286/607 (47%), Gaps = 98/607 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A   +SC     ++ G+QLH H +K    +S   +   ++ +Y +  + TDA   F  +P
Sbjct: 254 ASAFRSCAAMSCLNTGRQLHAHAIKNK-FSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQ 126
                + NAM+ G ++ G   +++ LF  M + +     + +SG   A A+      G+Q
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 372

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H   + +G D D  + +++++LYGKC     A  +   MK+ D                
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKD---------------- 416

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                          SV WN++I+    N    + +L F++M R G+  D  T  SVL A
Sbjct: 417 ---------------SVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKA 461

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C++L  LE+G  VH    K G+  D  VAS ++D Y K                      
Sbjct: 462 CAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCK---------------------- 499

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG I++A+ +   +  + ++SWN+++ G S N    EA   F  M  + L+
Sbjct: 500 ---------CGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLK 550

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D F+ A+V+  CAN++++ELG+Q+  ++    +  D+ IS++LVD Y KCG        
Sbjct: 551 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 610

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL +F  M+   V P   TF A+L AC H GL 
Sbjct: 611 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 670

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G ++F  M   Y ++P++EH++CMVD+  R+    EAV  I  MPF+AD  +W ++L 
Sbjct: 671 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 730

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C    D  +    A  ++ LDP+++  YI LS+++A SG+W   S  R ++++  + K 
Sbjct: 731 ICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKE 790

Query: 574 PGCSWAD 580
           PGCSW +
Sbjct: 791 PGCSWIE 797



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 142/558 (25%), Positives = 233/558 (41%), Gaps = 130/558 (23%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           ++N LLQMY RC     A  +FD MPRR+  SWN M+  +   G    ++ LF+ MP  +
Sbjct: 54  VSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPD 113

Query: 103 DFSWNMLISGFAK---------------------------------ADLAALEYGKQIHS 129
             SWN L+SG+ +                                 + L  L  G Q+H+
Sbjct: 114 VVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHA 173

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
             +  GL+ D   GS+LV++YGK                               C  ++D
Sbjct: 174 LAVKTGLEIDVRTGSALVDMYGK-------------------------------CRSLDD 202

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A   F    + + V W + I+G + N +    L LF +M+R G+     + AS   +C++
Sbjct: 203 ALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAA 262

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           +  L  G+Q+H HA K     D +V +A++D Y+K                         
Sbjct: 263 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK------------------------- 297

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                    + DA+  F  +PN ++ + N+M+VGL + G  IEA+ LF  M +  +R D 
Sbjct: 298 ------ANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDV 351

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            SL+ V SACA       G+QV       G D D  ++ +++D Y KC            
Sbjct: 352 VSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQG 411

Query: 419 ---------------------YDALAL-FNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                YD   L FNEM   G+KP   T+ ++L AC     ++ G
Sbjct: 412 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG 471

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
               D +  +  +  +    S +VD++ + G ++EA  L +++  +  V  W++IL G  
Sbjct: 472 LMVHDKV-IKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNAILSGFS 529

Query: 517 AHGDKGLGRKVAERMIEL 534
            + +    +K    M+++
Sbjct: 530 LNKESEEAQKFFSEMLDM 547



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 187/423 (44%), Gaps = 66/423 (15%)

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            ++V+G   ++ + + L+ +Y +C     A +V + M   D    + +++ Y++ G ++ 
Sbjct: 42  RMVVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 101

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A  +FD   D   V WN+++SGY       E++ LF +M R GV  D +T A +L +CS+
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  L  G QVH  A K G+  DV   SAL+D Y K                         
Sbjct: 162 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK------------------------- 196

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                 C  ++DA   F  MP ++ +SW + I G  QN   +  L+LF  M +L L + +
Sbjct: 197 ------CRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQ 250

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------ 417
            S AS   +CA +S L  G Q+ A        SD+++ T++VD Y K             
Sbjct: 251 PSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFG 310

Query: 418 ---------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                G +A+ LF  M  + ++  +++ + + SAC       +G
Sbjct: 311 LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQG 370

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
           Q+    +  +   D +I   + ++DL+ +   L EA  + + M  + D   W++I+    
Sbjct: 371 QQ-VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALE 428

Query: 517 AHG 519
            +G
Sbjct: 429 QNG 431



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 141/325 (43%), Gaps = 45/325 (13%)

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G + +  V++ LL  Y++    + A ++F  +   DT+  NTM+T YS  G I  A  +F
Sbjct: 47  GFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             MP+  ++SWN+++ G  Q G   E++DLF  M +  +  D+ + A ++ +C+ +  L 
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------------- 418
           LG QV A     GL+ D    ++LVD Y KC                             
Sbjct: 167 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCV 226

Query: 419 -----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPE 472
                   L LF EM+  G+  +  ++ +   +C     +  G++    A+K ++  D  
Sbjct: 227 QNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV 286

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           +   + +VD++A+A  L +A      +P    E    M   ++R  +     GL + +  
Sbjct: 287 VG--TAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR 344

Query: 530 RMIELDPENACAYIQLSSIFATSGE 554
             I  D       + LS +F+   E
Sbjct: 345 SSIRFD------VVSLSGVFSACAE 363


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 184/609 (30%), Positives = 290/609 (47%), Gaps = 95/609 (15%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C+     H G+ +H H +  G L + L ++  LL MY++C    DA  +F  MP R+
Sbjct: 17  LKACSALADHHCGRAIHRHAIHAG-LQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 75

Query: 72  CFSWNAMIEGFMKLGHKEKSL-QLFNVMPQKNDFSWN--MLISGFAK-ADLAALEYGKQI 127
             +WNAM+ G+   G    ++  L ++  Q +    N   L++     A   AL  G  +
Sbjct: 76  LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 135

Query: 128 HSHILVNGLDFDSVLGSSLVN--LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           H++ +   L  +    S L +  L G                       +AL+  YA CG
Sbjct: 136 HAYCIRACLHPNRNSKSKLTDGVLLG-----------------------TALLDMYAKCG 172

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVL 244
            +  ARRVFD     + V W+++I G++  +  T+A LLF  M   G+     +++AS L
Sbjct: 173 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASAL 232

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+SL  L  G+Q+H    K GV  D+   ++LL  Y+K                    
Sbjct: 233 RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK-------------------- 272

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                       G I+ A  +F  M  K  +S+++++ G  QNG   EA  +F  M   +
Sbjct: 273 -----------AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACN 321

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           +  D  ++ S+I AC+++++L+ G      V I GL S+  I  +L+D Y KCG      
Sbjct: 322 VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSR 381

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +A ALF EM N G  P  +TF  +LSAC H G
Sbjct: 382 QVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 441

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV EG+ WF  M   Y + P +EHY CMVDL +R G L+EA   I+ MP  ADV +W ++
Sbjct: 442 LVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVAL 501

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  + +  LG+KV+  + EL PE    ++ LS+I++ +G +++++ +R I + +   
Sbjct: 502 LGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFK 561

Query: 572 KLPGCSWAD 580
           K PGCSW +
Sbjct: 562 KSPGCSWIE 570



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 161/377 (42%), Gaps = 78/377 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C +   + +G+QLH    K G+ ++ L   N LL MY + G    A+ LFDEM
Sbjct: 228 IASALRACASLDHLRMGEQLHALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEM 286

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGK 125
             ++  S++A++ G+++ G  E++  +F  M   N    +  M+    A + LAAL++G+
Sbjct: 287 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
             H  +++ GL  ++ + ++L+++Y KCG  + + QV NMM   D               
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD--------------- 391

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                            V WN+MI+GY  +    EA  LF +M   G   D  T   +LS
Sbjct: 392 ----------------IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLS 435

Query: 246 ACSSLGFLEHGK---QVHGHA-----------CKV------GVID-------------DV 272
           ACS  G +  GK    V GH            C V      G +D             DV
Sbjct: 436 ACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 495

Query: 273 IVASALLD---TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI---- 325
            V  ALL     Y    +     ++  EL    T     +  +YS+ GR ++A  +    
Sbjct: 496 RVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQ 555

Query: 326 ----FRTMPNKSLISWN 338
               F+  P  S I  N
Sbjct: 556 KVQGFKKSPGCSWIEIN 572



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 142/311 (45%), Gaps = 25/311 (8%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M R+ V  +  T    L ACS+L     G+ +H HA   G+  D+ V++ALLD Y K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA--------KHIFRTMPNKSLISWNS 339
             DA  +F+ +   D +  N M+  Y+  G    A          + R  PN S +   +
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV--A 118

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL-----ELGEQVFAR 394
           ++  L+Q G+  +   +     +  L  ++ S + +       ++L     + G  ++AR
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178

Query: 395 VTIIGLDS-DQIISTSLVDFYCKCGY--DALALFNEMRNTG---VKPTIITFTAILSACD 448
                + + +++  ++L+  +  C     A  LF  M   G   + PT I   + L AC 
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSI--ASALRACA 236

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
               ++ G++   A+  +  +  ++   + ++ ++A+AG +++A+ L ++M  + D   +
Sbjct: 237 SLDHLRMGEQ-LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSY 294

Query: 509 SSILRGCVAHG 519
           S+++ G V +G
Sbjct: 295 SALVSGYVQNG 305


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/607 (28%), Positives = 286/607 (47%), Gaps = 98/607 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A   +SC     ++ G+QLH H +K    +S   +   ++ +Y +  + TDA   F  +P
Sbjct: 296 ASAFRSCAAMSCLNTGRQLHAHAIKNK-FSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 354

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQ 126
                + NAM+ G ++ G   +++ LF  M + +     + +SG   A A+      G+Q
Sbjct: 355 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 414

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H   + +G D D  + +++++LYGKC     A  +   MK+ D                
Sbjct: 415 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKD---------------- 458

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                          SV WN++I+    N    + +L F++M R G+  D  T  SVL A
Sbjct: 459 ---------------SVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKA 503

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C++L  LE+G  VH    K G+  D  VAS ++D Y K                      
Sbjct: 504 CAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCK---------------------- 541

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG I++A+ +   +  + ++SWN+++ G S N    EA   F  M  + L+
Sbjct: 542 ---------CGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLK 592

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D F+ A+V+  CAN++++ELG+Q+  ++    +  D+ IS++LVD Y KCG        
Sbjct: 593 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 652

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL +F  M+   V P   TF A+L AC H GL 
Sbjct: 653 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 712

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G ++F  M   Y ++P++EH++CMVD+  R+    EAV  I  MPF+AD  +W ++L 
Sbjct: 713 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 772

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C    D  +    A  ++ LDP+++  YI LS+++A SG+W   S  R ++++  + K 
Sbjct: 773 ICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKE 832

Query: 574 PGCSWAD 580
           PGCSW +
Sbjct: 833 PGCSWIE 839



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 142/558 (25%), Positives = 233/558 (41%), Gaps = 130/558 (23%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           ++N LLQMY RC     A  +FD MPRR+  SWN M+  +   G    ++ LF+ MP  +
Sbjct: 96  VSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPD 155

Query: 103 DFSWNMLISGFAK---------------------------------ADLAALEYGKQIHS 129
             SWN L+SG+ +                                 + L  L  G Q+H+
Sbjct: 156 VVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHA 215

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
             +  GL+ D   GS+LV++YGK                               C  ++D
Sbjct: 216 LAVKTGLEIDVRTGSALVDMYGK-------------------------------CRSLDD 244

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A   F    + + V W + I+G + N +    L LF +M+R G+     + AS   +C++
Sbjct: 245 ALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAA 304

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           +  L  G+Q+H HA K     D +V +A++D Y+K                         
Sbjct: 305 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK------------------------- 339

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                    + DA+  F  +PN ++ + N+M+VGL + G  IEA+ LF  M +  +R D 
Sbjct: 340 ------ANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDV 393

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            SL+ V SACA       G+QV       G D D  ++ +++D Y KC            
Sbjct: 394 VSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQG 453

Query: 419 ---------------------YDALAL-FNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                YD   L FNEM   G+KP   T+ ++L AC     ++ G
Sbjct: 454 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG 513

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
               D +  +  +  +    S +VD++ + G ++EA  L +++  +  V  W++IL G  
Sbjct: 514 LMVHDKV-IKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNAILSGFS 571

Query: 517 AHGDKGLGRKVAERMIEL 534
            + +    +K    M+++
Sbjct: 572 LNKESEEAQKFFSEMLDM 589



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 186/423 (43%), Gaps = 66/423 (15%)

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            ++V+G    + + + L+ +Y +C     A +V + M   D    + +++ Y++ G ++ 
Sbjct: 84  RMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 143

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A  +FD   D   V WN+++SGY       E++ LF +M R GV  D +T A +L +CS+
Sbjct: 144 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 203

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  L  G QVH  A K G+  DV   SAL+D Y K                         
Sbjct: 204 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK------------------------- 238

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                 C  ++DA   F  MP ++ +SW + I G  QN   +  L+LF  M +L L + +
Sbjct: 239 ------CRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQ 292

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------ 417
            S AS   +CA +S L  G Q+ A        SD+++ T++VD Y K             
Sbjct: 293 PSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFG 352

Query: 418 ---------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                G +A+ LF  M  + ++  +++ + + SAC       +G
Sbjct: 353 LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQG 412

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
           Q+    +  +   D +I   + ++DL+ +   L EA  + + M  + D   W++I+    
Sbjct: 413 QQ-VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAALE 470

Query: 517 AHG 519
            +G
Sbjct: 471 QNG 473



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 140/325 (43%), Gaps = 45/325 (13%)

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G +    V++ LL  Y++    + A ++F  +   DT+  NTM+T YS  G I  A  +F
Sbjct: 89  GFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 148

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             MP+  ++SWN+++ G  Q G   E++DLF  M +  +  D+ + A ++ +C+ +  L 
Sbjct: 149 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 208

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------------- 418
           LG QV A     GL+ D    ++LVD Y KC                             
Sbjct: 209 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCV 268

Query: 419 -----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPE 472
                   L LF EM+  G+  +  ++ +   +C     +  G++    A+K ++  D  
Sbjct: 269 QNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV 328

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           +   + +VD++A+A  L +A      +P    E    M   ++R  +     GL + +  
Sbjct: 329 VG--TAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR 386

Query: 530 RMIELDPENACAYIQLSSIFATSGE 554
             I  D       + LS +F+   E
Sbjct: 387 SSIRFD------VVSLSGVFSACAE 405


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 179/618 (28%), Positives = 281/618 (45%), Gaps = 118/618 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  + +C+    +  G+Q+H +  +      T  + N L+ +Y +C   + A  LFD M
Sbjct: 224 LASAVSACSALGFLEGGRQIHGYAYRSATETDT-SVINVLIDLYCKCSRLSAARKLFDCM 282

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
             RN  SW  MI G+M+     +++ +F          WNM  +G+              
Sbjct: 283 EYRNLVSWTTMISGYMQNSFNAEAITMF----------WNMTQAGWQPDGFACTSILNSC 332

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
             LAA+  G+QIH+H++   L                               E D++  +
Sbjct: 333 GSLAAIWQGRQIHAHVIKADL-------------------------------EADEYVKN 361

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           ALI  YA C  + +AR VFD   +  ++ +N+MI GY  N +  EA+ +F +MR   +  
Sbjct: 362 ALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRP 421

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
              T  S+L   SS   +E  KQ+HG   K G   D+  ASAL+D YSK           
Sbjct: 422 SLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSK----------- 470

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                               C  + DAK +F  +  K ++ WNSMI G +QN    EA+ 
Sbjct: 471 --------------------CSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIK 510

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  +    +  ++F+  ++++  + ++S+  G+Q  A +   G+D+D  +S +L+D Y 
Sbjct: 511 LFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYA 570

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG+                                 +AL +F  M    V+P  +TF  
Sbjct: 571 KCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVG 630

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H G V EG   F++MK  Y I+P IEHY+ +V+LF R+G L+ A   IE+MP +
Sbjct: 631 VLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIK 690

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W S+L  C   G+  +GR  AE  +  DP ++  Y+ LS+I+A+ G W     +R
Sbjct: 691 PAAAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNLR 750

Query: 563 DIMREKHVGKLPGCSWAD 580
             M      K  GCSW +
Sbjct: 751 QQMDSSGTVKETGCSWIE 768



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 141/551 (25%), Positives = 239/551 (43%), Gaps = 104/551 (18%)

Query: 3   TRIDYLARLLQSC---NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           T I  LAR+L SC          +   +H      G L+  L + N LL+ Y   G   D
Sbjct: 13  THIRSLARVLLSCLPTGGDRLRRLNPAIHARATVAGRLDD-LFLTNLLLRGYSNLGRLRD 71

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAKA-- 116
           A  LFD MP RN  SW ++I  + + G  + ++ LF    + + +     L++   +A  
Sbjct: 72  ARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACT 131

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
              A+  G+Q+H   +   LD +  +G++L+NLY K G  + A  V + +        + 
Sbjct: 132 QSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNT 191

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           +I+GYA  G    A  +FDR                               M   GV  D
Sbjct: 192 VITGYAQIGCGGVALELFDR-------------------------------MGIEGVRPD 220

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
              LAS +SACS+LGFLE G+Q+HG+A +     D  V + L+D Y K    S A KLF 
Sbjct: 221 RFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFD 280

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                                           M  ++L+SW +MI G  QN    EA+ +
Sbjct: 281 -------------------------------CMEYRNLVSWTTMISGYMQNSFNAEAITM 309

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F NM +   + D F+  S++++C +++++  G Q+ A V    L++D+ +  +L+D Y K
Sbjct: 310 FWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAK 369

Query: 417 CG--------YDALA-------------------------LFNEMRNTGVKPTIITFTAI 443
           C         +DALA                         +F  MR   ++P+++TF ++
Sbjct: 370 CEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSL 429

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L       L  E  K    +  +     ++   S ++D++++   +N+A  +   + ++ 
Sbjct: 430 LGVSS-SQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYK- 487

Query: 504 DVGMWSSILRG 514
           D+ +W+S++ G
Sbjct: 488 DMVIWNSMIFG 498



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 141/584 (24%), Positives = 256/584 (43%), Gaps = 105/584 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L++C    ++ +G+Q+H   +K   L++ + +   L+ +Y + G   +A+L+F  +
Sbjct: 123 LASVLRACTQSKAVSLGEQVHGIAVKLD-LDANVYVGTALINLYAKLGCMDEAMLVFHAL 181

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P R   +WN +I G+ ++G    +L+LF+ M     + + F     +S  A + L  LE 
Sbjct: 182 PVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVS--ACSALGFLEG 239

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH +   +  + D+ + + L++LY K                               
Sbjct: 240 GRQIHGYAYRSATETDTSVINVLIDLYCK------------------------------- 268

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C +++ AR++FD     + V W +MISGY+ N+ + EA+ +F  M + G   D     S+
Sbjct: 269 CSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSI 328

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L++C SL  +  G+Q+H H  K  +  D  V +AL+D Y+K    ++A  +F  L   D 
Sbjct: 329 LNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDA 388

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           I  N MI                                G S+N    EA+++F  M   
Sbjct: 389 ISYNAMIE-------------------------------GYSKNRDLAEAVNIFQRMRFF 417

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
            LR    +  S++   ++  ++EL +Q+   +   G   D   +++L+D Y KC      
Sbjct: 418 SLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDA 477

Query: 418 ---------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      G +A+ LFN++  +G+ P   TF A+++     
Sbjct: 478 KTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTL 537

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
             +  GQ+ F A   +  +D +    + ++D++A+ G + E   L E    E DV  W+S
Sbjct: 538 ASMFHGQQ-FHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGE-DVICWNS 595

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSG 553
           ++     HG      +V   M E + E N   ++ + S  A +G
Sbjct: 596 MITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAG 639



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 177/400 (44%), Gaps = 75/400 (18%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D F  + L+ GY+N G++ DAR +FDR    + V W S+IS Y  +  D  A+ LF   +
Sbjct: 52  DLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQ 111

Query: 230 RNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
           +    + +   LASVL AC+    +  G+QVHG A K+ +  +V V +AL++ Y+K G  
Sbjct: 112 KASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCM 171

Query: 289 SDACKLFSELKVYDTILLNTMITVYSS--CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
            +A  +F  L V   +  NT+IT Y+   CG +                           
Sbjct: 172 DEAMLVFHALPVRTPVTWNTVITGYAQIGCGGV--------------------------- 204

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
                 AL+LF  M    +R D+F LAS +SAC+ +  LE G Q+         ++D  +
Sbjct: 205 ------ALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSV 258

Query: 407 STSLVDFYCKC--------------------------GY-------DALALFNEMRNTGV 433
              L+D YCKC                          GY       +A+ +F  M   G 
Sbjct: 259 INVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGW 318

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY--SCMVDLFARAGCLNE 491
           +P     T+IL++C     + +G++    +      D E + Y  + ++D++A+   L E
Sbjct: 319 QPDGFACTSILNSCGSLAAIWQGRQIHAHV---IKADLEADEYVKNALIDMYAKCEHLTE 375

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           A  + + +  E D   +++++ G   + D      + +RM
Sbjct: 376 ARAVFDALA-EDDAISYNAMIEGYSKNRDLAEAVNIFQRM 414


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/607 (28%), Positives = 309/607 (50%), Gaps = 56/607 (9%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           + +L R   S  T +   +  ++           S + I+N  L+     G   +A  +F
Sbjct: 20  LRHLNRSFSSLKTPNPSKITTRIPFPVFASDTYESNVKISNLGLR-----GKVKEARKVF 74

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
           DEMPRR+  S+ +MI  ++K     ++  LF  +P++N  + + +ISG+ +A    L+  
Sbjct: 75  DEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSAMISGYVRA--GRLDKA 132

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +Q+   ++    + +    +SLV+ Y K G+ + A ++ N M E +    +  + GYA  
Sbjct: 133 RQVFDQMV----ERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSWTTAVVGYAQN 188

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G +++AR +F++  + + + W +M+  Y+ N+E  EA  LF++M +  +     +   ++
Sbjct: 189 GFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLY----SWNIMI 244

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S C +   L    Q+     +   +    + + L    ++ GM   A K F  +   D  
Sbjct: 245 SGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGL----ARNGMMELARKYFDHMPTKDIA 300

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N MIT Y   G + +A ++F  MP K+++SWN++I G ++NG    +L     M + +
Sbjct: 301 AWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSN 360

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
            + ++ ++ SV++AC +I  LEL  Q    V  +G + D++++  LV  Y +CG      
Sbjct: 361 FKPNETTITSVLTACDSI--LEL-MQAHGLVIHLGFEQDKVLANGLVTTYSRCGDVLSAR 417

Query: 419 --YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCG 451
             +D                         AL +F  M  +G KP  ITF  +LSAC H G
Sbjct: 418 FIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAG 477

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSS 510
           LVK+GQ  FD+M   Y ++P  EHYSC+VD+  RAG +N+A+ ++ +M P E D  +  +
Sbjct: 478 LVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGA 537

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H D GL   + E++IE +P ++ +Y+ L++ +A  G+W + + +R  M+E++V
Sbjct: 538 LLGACRLHKDVGLANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNV 597

Query: 571 GKLPGCS 577
            K PG S
Sbjct: 598 KKEPGFS 604


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 180/622 (28%), Positives = 305/622 (49%), Gaps = 116/622 (18%)

Query: 2   DTRID---YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           D+RI+     A LLQ+C    S   G+Q H H +K G L +   + N LL +Y + G  +
Sbjct: 54  DSRINKPLLYASLLQTCIKVDSFTRGRQFHAHVVKSG-LETDRFVGNSLLSLYFKLG--S 110

Query: 59  DALL---LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLIS 111
           D+LL   +FD +  ++  SW +MI G+++ G    +++LF  M     + N F+ + +I 
Sbjct: 111 DSLLTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIK 170

Query: 112 GFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
             A +++  L  GK  H  ++  G D + V+ SSL+++YG+    NS +           
Sbjct: 171 --ACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGR----NSVS----------- 213

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH-KMRR 230
                           +DAR++FD   +   V W ++IS +  N+   EAL  F+ K R 
Sbjct: 214 ----------------SDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRA 257

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
           + +  D  T  SVL+AC +LG L  G+++H      G   +V+  S+L+D Y K      
Sbjct: 258 HRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGK------ 311

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
                                    CG +E ++ +F  M N++ +SW++++     NG  
Sbjct: 312 -------------------------CGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDY 346

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
            +A++LF  M ++DL    +S  +VI ACA ++++  G+++  +    G   D I+ ++L
Sbjct: 347 EKAVNLFREMKEVDL----YSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESAL 402

Query: 411 VDFYCKCG--------YD-------------------------ALALFNEMRNTGVKPTI 437
           VD Y KCG        +D                         A+ +F  M   G+KP  
Sbjct: 403 VDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDC 462

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           I+F  +L AC H GLV + + +FD M  +Y I P +EHY+CMVDL  RAG L EA NLIE
Sbjct: 463 ISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDLLGRAGLLEEAENLIE 522

Query: 498 QMPFEADVGMWSSILRGCVAH-GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
                 D  +W  +L  C     +     ++A++++EL+P+   +Y+ L++++   G W+
Sbjct: 523 NAECRNDSSLWLVLLGACTTTCTNSATAERIAKKLMELEPQCYLSYVHLANVYRAVGRWD 582

Query: 557 KSSLIRDIMREKHVGKLPGCSW 578
            +  +R++M+ + + K+PG SW
Sbjct: 583 DAVKVRELMKNRQLKKMPGQSW 604


>gi|449445246|ref|XP_004140384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Cucumis sativus]
          Length = 688

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 187/614 (30%), Positives = 296/614 (48%), Gaps = 81/614 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     + +GK +     +  +   T+ + N L+ M+++CG+  DA+ +F  + R 
Sbjct: 109 VLKACGFVGDLGLGKLIQERIYEDKLQADTI-LMNSLMDMFVKCGSLNDAVEVFHNISRA 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KADLAALEYGKQIHS 129
              +WN ++ G+ K G   ++ +LF+ MP  N  SWN +I+GFA      ALE+   +H 
Sbjct: 168 TTTTWNIIVSGYSKAGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNGSQRALEFVSMMHK 227

Query: 130 H-ILVNGLDFDSVLGSSLVN---LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
             I ++   F   L  S ++     GK       + V  +  E   F LSALI  Y+NC 
Sbjct: 228 RCIKLDDFTFPCALKISALHGLLFIGK----QVHSYVTKLGYESSCFTLSALIDMYSNCN 283

Query: 186 KMNDARRVFDRTTDTSS------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            + +A ++FD+ +  ++       +WNSM+SGY+ NN D  AL L  ++  +G L D+ T
Sbjct: 284 DLIEAVKLFDQHSSFNASISDNLALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSYT 343

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
               L  C +L     G Q+HG     G   D +V S L+D Y+K               
Sbjct: 344 FGGALKVCINLLSRRVGLQLHGLIVTCGYELDYVVGSILVDLYAK--------------- 388

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                              I+DA  IF  +P K +I+W+ +I+G +Q G    A  +F  
Sbjct: 389 ----------------LANIDDALAIFHRLPRKDIIAWSGLIMGCAQIGLNWLAFSMFKG 432

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M +L   +D F +++++  C+N++SL  G+QV A     G + +    TSL+D Y KCG 
Sbjct: 433 MLELVNEIDHFVISTILKVCSNLASLRSGKQVHALCVKSGYEMEGFTITSLLDMYSKCGE 492

Query: 420 --DALALF-------------------------------NEMRNTGVKPTIITFTAILSA 446
             DAL LF                               +EM  +G+ P  ITF  +LSA
Sbjct: 493 IEDALTLFCCEQEKDIVSWTGIIVGCGQNGKAAEAVRFFHEMIRSGITPNEITFLGVLSA 552

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C + GLV+E +  F++MK  Y ++P +EHY CMVDL A  G   EA  LI  MPFE +  
Sbjct: 553 CRYAGLVEEARSIFNSMKSVYGLEPHLEHYCCMVDLLASVGLPEEAEKLIANMPFEPNQT 612

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            W ++L  C    D  L  +VA+ ++E  P +   Y+ LS+ +A+ G W   S  R+  +
Sbjct: 613 TWRTLLGACGTRNDTKLINRVADGLLEATPNDPSTYVTLSNAYASLGMWHTLSKAREASK 672

Query: 567 EKHVGKLPGCSWAD 580
           +  + K  G SW +
Sbjct: 673 KFGIKK-AGLSWIE 685



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 146/575 (25%), Positives = 245/575 (42%), Gaps = 87/575 (15%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ++ +A+ L+ C T  +   G  +H +  K G LN    +AN L+ MY    N  DA  +F
Sbjct: 3   VNIIAKDLRHCATVRAFKRGNAIHAYLRKFGGLNDVF-LANNLISMYAEFFNVRDAEKVF 61

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK---NDFSWNMLISGFAKADLAAL 121
           DEM  RN  +W  M+  F   G   ++++L+N MP+    N + ++ ++   A   +  L
Sbjct: 62  DEMTDRNIVTWTTMVSAFTDGGRPYEAIRLYNDMPKSETPNGYMYSAVLK--ACGFVGDL 119

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             GK I   I  + L  D++L +SL++++ KCG  N A +V + +        + ++SGY
Sbjct: 120 GLGKLIQERIYEDKLQADTILMNSLMDMFVKCGSLNDAVEVFHNISRATTTTWNIIVSGY 179

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           +  G M +A ++F      + V WNSMI+G+ ++N    AL     M +  +  D  T  
Sbjct: 180 SKAGLMVEAEKLFHCMPHPNVVSWNSMIAGF-ADNGSQRALEFVSMMHKRCIKLDDFTFP 238

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
             L   +  G L  GKQVH +  K+G        SAL+D YS      +A KLF      
Sbjct: 239 CALKISALHGLLFIGKQVHSYVTKLGYESSCFTLSALIDMYSNCNDLIEAVKLF------ 292

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                              D    F    + +L  WNSM+ G   N     AL+L   ++
Sbjct: 293 -------------------DQHSSFNASISDNLALWNSMLSGYVINNCDQAALNLLSEIH 333

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
                +D ++    +  C N+ S  +G Q+   +   G + D ++ + LVD Y K     
Sbjct: 334 CSGALLDSYTFGGALKVCINLLSRRVGLQLHGLIVTCGYELDYVVGSILVDLYAKLANID 393

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW--FDAMKWQYHIDPEIEHY- 476
           DALA+F+ +     +  II ++ ++  C   GL      W  F   K    +  EI+H+ 
Sbjct: 394 DALAIFHRLP----RKDIIAWSGLIMGCAQIGL-----NWLAFSMFKGMLELVNEIDHFV 444

Query: 477 ------------------------------------SCMVDLFARAGCLNEAVNLI--EQ 498
                                               + ++D++++ G + +A+ L   EQ
Sbjct: 445 ISTILKVCSNLASLRSGKQVHALCVKSGYEMEGFTITSLLDMYSKCGEIEDALTLFCCEQ 504

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
              E D+  W+ I+ GC  +G      +    MI 
Sbjct: 505 ---EKDIVSWTGIIVGCGQNGKAAEAVRFFHEMIR 536



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L+ C+   S+  GKQ+H   +K G       I + LL MY +CG   DAL LF   
Sbjct: 445 ISTILKVCSNLASLRSGKQVHALCVKSGYEMEGFTITS-LLDMYSKCGEIEDALTLFCCE 503

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             ++  SW  +I G  + G   ++++ F+ M +     N+ ++  ++S    A L  +E 
Sbjct: 504 QEKDIVSWTGIIVGCGQNGKAAEAVRFFHEMIRSGITPNEITFLGVLSACRYAGL--VEE 561

Query: 124 GKQI-HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISGY 181
            + I +S   V GL+        +V+L    G    A +++ NM  EP+      L+   
Sbjct: 562 ARSIFNSMKSVYGLEPHLEHYCCMVDLLASVGLPEEAEKLIANMPFEPNQTTWRTLLGA- 620

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
             CG  ND + + +R  D       +  S Y++ +    +L ++H + +
Sbjct: 621 --CGTRNDTKLI-NRVADGLLEATPNDPSTYVTLSNAYASLGMWHTLSK 666


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 202/717 (28%), Positives = 339/717 (47%), Gaps = 159/717 (22%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           + + +YL  LL++C    S+   K++H HFLK    N+   + ++L ++Y+ C     A 
Sbjct: 6   EVKNNYL-HLLEACIQSKSLTEAKKIHQHFLKN-TSNADSSVLHKLTRLYLSCNQVVLAR 63

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAD 117
            LFDE+P  +   WN +I  +   G  + ++ L++ M     + N +++  ++   A + 
Sbjct: 64  RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK--ACSG 121

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVN----------------------------- 148
           L A+E G +IHSH  + GL+ D  + ++LV+                             
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAM 181

Query: 149 -----LYGKCGDFNSANQVLNMMKE----PDD------------------------FCL- 174
                LYG C D   A Q++  M+E    P+                         +C+ 
Sbjct: 182 IAGCSLYGLCDD---AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR 238

Query: 175 ----------SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
                     + L+  YA C  +  AR++FD     + V W++MI GY++++   EAL L
Sbjct: 239 RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALEL 298

Query: 225 FHKMRRNGVLEDA-----STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           F +M    +L+DA      TL SVL AC+ L  L  G+++H +  K+G            
Sbjct: 299 FDQM----ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLG------------ 342

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
                               V D +L NT++++Y+ CG I+DA   F  M  K  +S+++
Sbjct: 343 -------------------SVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSA 383

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           ++ G  QNG+   AL +F  M    +  D  ++  V+ AC+++++L+ G      + + G
Sbjct: 384 IVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRG 443

Query: 400 LDSDQIISTSLVDFYCKCG---------------------------------YDALALFN 426
             +D +I  +L+D Y KCG                                  +AL LF+
Sbjct: 444 FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFH 503

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           ++   G+KP  ITF  +LS+C H GLV EG+ WFDAM   + I P +EH  CMVD+  RA
Sbjct: 504 DLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRA 563

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G ++EA + I  MPFE DV +WS++L  C  H +  LG +V++++  L PE+   ++ LS
Sbjct: 564 GLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLS 623

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD--GIAFNCWFLDTMFLQLANFDE 601
           +I++ +G W+ ++ IR   ++  + K+PGCSW +  GI       D   LQL+  + 
Sbjct: 624 NIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINR 680



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 169/392 (43%), Gaps = 88/392 (22%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD     L  +L++C     +  G++LH + +K G +   L + N LL MY +CG   DA
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDIL-LGNTLLSMYAKCGVIDDA 366

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKAD 117
           +  FDEM  ++  S++A++ G ++ G+   +L +F +M       D +  ML    A + 
Sbjct: 367 IRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLT-TMLGVLPACSH 425

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           LAAL++G   H +++V G   D+++ ++L+++Y KCG  + A +V N M   D       
Sbjct: 426 LAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHD------- 478

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                                    V WN+MI GY  +    EAL LFH +   G+  D 
Sbjct: 479 ------------------------IVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDD 514

Query: 238 STLASVLSACSSLGFLEHGK--------------QVHGHACKVGVIDDVIVASALLDT-- 281
            T   +LS+CS  G +  G+              ++    C V    D++  + L+D   
Sbjct: 515 ITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMV----DILGRAGLIDEAH 570

Query: 282 YSKRGMPSDA-----CKLFSELKVYDTILLNTMIT-------------------VYSSCG 317
           +  R MP +        L S  +++  I L   ++                   +YS+ G
Sbjct: 571 HFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 630

Query: 318 RIEDAKHI--------FRTMPNKSLISWNSMI 341
           R +DA HI         + +P  S I  N ++
Sbjct: 631 RWDDAAHIRITQKDWGLKKIPGCSWIEINGIV 662


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 186/647 (28%), Positives = 302/647 (46%), Gaps = 109/647 (16%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF 95
           I+++ + I+N     Y +      A  LFD+MP+R   SWN MI  + K G   ++L L 
Sbjct: 32  IISTNIAISN-----YAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLV 86

Query: 96  NVMPQKN----DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
             M + +    + +++ ++S  A+  L  L  GK IH  +L +G +   ++GS+L+  Y 
Sbjct: 87  YSMHRSHMKLSESTFSSVLSVCAR--LRCLRDGKLIHCLVLKSGSESFELVGSALLYFYA 144

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
            C +   A +V +++   ++   S ++ GY  C  M+DA  VF +      V W ++ISG
Sbjct: 145 SCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISG 204

Query: 212 YISNNEDT-EALLLFHKMRRNG-VLEDASTLASVLSACSSLGF---------------LE 254
           +  N +   +AL +F  M R+G    +  T   V+ AC  LG                LE
Sbjct: 205 FSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLE 264

Query: 255 HGKQVHG----HACKVGVIDDV-------------------------------------- 272
           +   + G      C+   IDD                                       
Sbjct: 265 YDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGM 324

Query: 273 -----IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
                +  + ++  Y+  G   D+ +LF ++        NTMI+VYS  G I+ A  +F 
Sbjct: 325 TEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFE 384

Query: 328 TMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
              N K  ++WNSMI G   +G P EAL L+  M++L ++  + + +++  AC+ + SL 
Sbjct: 385 ETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLH 444

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------- 419
            G+ + A +     +S+  + TSL+D Y KCG                            
Sbjct: 445 QGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHA 504

Query: 420 ------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
                 +A++LF+ M   G+ P   TF  +LSAC   GLV EG K F +M+  Y + P +
Sbjct: 505 YHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTL 564

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           EHY+C+VDL  R+G + EA   I++MP EAD  +W ++L  C    D  +G +VAE+M  
Sbjct: 565 EHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFS 624

Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            DP+   +Y+ LS+I+A  G W +  ++R I+R   V K PGCSW +
Sbjct: 625 FDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIE 671



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 108/224 (48%), Gaps = 40/224 (17%)

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           + I  N  I+ Y+   +++ A+ +F  MP ++++SWN+MI   S++G   EAL L  +M+
Sbjct: 31  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH 90

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA 421
           +  +++ + + +SV+S CA +  L  G+ +   V   G +S +++ ++L+ FY  C    
Sbjct: 91  RSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASC---- 146

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
              F                           + E ++ FD +  +  +      +S M+ 
Sbjct: 147 ---FE--------------------------IGEARRVFDVLVRRNEV-----LWSLMLV 172

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
            +     +++A+++  +MP   DV  W++++ G   +GD G G+
Sbjct: 173 GYVTCNVMDDALSVFVKMP-RRDVVAWTTLISGFSKNGD-GCGK 214


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 183/635 (28%), Positives = 316/635 (49%), Gaps = 76/635 (11%)

Query: 3   TRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           T+ D+  L   L++C    S   G+ LH      G   S + + N L+ MY RCG+  DA
Sbjct: 145 TKPDHFTLPYALKACGELPSYCCGRALHGLICCNG-FESNVFVCNALVAMYSRCGSLEDA 203

Query: 61  LLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGF 113
            L+FDE+ R+   +  SWN+++   +K  +   +L+LF+ M     +K     + +IS  
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIV 263

Query: 114 ----AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
               A A L AL   K+IHS+ + NG   D+ + ++L++ Y KCG  N A +V N+M+  
Sbjct: 264 NILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLF 225
           D    +A+++GY   G    A  +F+     +     + W+++I+GY       EAL  F
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M  +G   ++ T+ S+LSAC+SLG L  G ++H ++ K            LL   +  
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLK----------KCLLSLDNDF 433

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVG 343
           G   D   L         ++ N +I +YS C   + A+ IF ++P   +++++W  MI G
Sbjct: 434 GGDGDGEDL---------MVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGG 484

Query: 344 LSQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 401
            +Q G   +AL +F  M      +  + ++++ ++ ACA++++L +G+Q+ A VT     
Sbjct: 485 YAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEY 544

Query: 402 SDQI--ISTSLVDFYCKC---------------------------------GYDALALFN 426
              +  ++  L+D Y KC                                 G +AL +F+
Sbjct: 545 EPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFD 604

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +M+  G  P  I+F  +L AC H G+V +G  +FD M+  Y +    EHY+C++DL AR 
Sbjct: 605 KMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARC 664

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G L++A   I++MP E    +W ++L  C  H +  L      +++ +  EN  +Y  +S
Sbjct: 665 GRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLIS 724

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADG 581
           +I+A +  W+  + IR +M++  + K PGCSW  G
Sbjct: 725 NIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQG 759



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 141/604 (23%), Positives = 265/604 (43%), Gaps = 123/604 (20%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKG----------ILNSTLP--------- 42
           D    + A LL+ C    S++  +Q+H   +  G          +  + LP         
Sbjct: 28  DVSPTHFASLLKEC---RSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKS 84

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL----QLFNVM 98
           +   ++  Y+ CG   DAL + + +       WN ++   +K GH ++++    ++    
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 99  PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
            + + F+    +   A  +L +   G+ +H  I  NG + +  + ++LV +Y +CG    
Sbjct: 145 TKPDHFTLPYALK--ACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGS--- 199

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISN 215
                                       + DA  VFD  T       + WNS+++ ++  
Sbjct: 200 ----------------------------LEDASLVFDEITRKGIDDVISWNSIVAAHVKG 231

Query: 216 NEDTEALLLFHKM------RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
           +    AL LF +M      +      D  ++ ++L AC+SL  L   K++H +A + G  
Sbjct: 232 SNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTF 291

Query: 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
            D  V +AL+DTY+K G  +DA K+F+ ++  D +  N M+T Y+  G    A  +F  M
Sbjct: 292 ADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENM 351

Query: 330 PNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
             +++    I+W+++I G +Q G   EALD F  M       +  ++ S++SACA++ +L
Sbjct: 352 RKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGAL 411

Query: 386 ELGEQVFA---RVTIIGLDSDQ---------IISTSLVDFYCKC---------------- 417
             G ++ A   +  ++ LD+D          ++  +L+D Y KC                
Sbjct: 412 SQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRR 471

Query: 418 ------------GY-------DALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEG 456
                       GY       DAL +F+EM  +   V P   T + IL AC H   ++ G
Sbjct: 472 ERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMG 531

Query: 457 QKWFDAMKWQYHIDPEIEHYS-CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           ++    +   +  +P +   + C++D++++ G ++ A N+ + MP   +V  W+S++ G 
Sbjct: 532 KQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMMSGY 590

Query: 516 VAHG 519
             HG
Sbjct: 591 GMHG 594



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 166/367 (45%), Gaps = 50/367 (13%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + +++ Y  CG   DA  V +R T + +V WN ++  +I       A+ +  +M R G  
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D  TL   L AC  L     G+ +HG  C  G   +V V +AL+  YS+          
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSR---------- 196

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPI 351
                                CG +EDA  +F  +  K +   ISWNS++    +  +P 
Sbjct: 197 ---------------------CGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPR 235

Query: 352 EALDLFCNMNKL------DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
            AL+LF  M+ +      + R D  S+ +++ ACA++ +L   +++ +     G  +D  
Sbjct: 236 TALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAF 295

Query: 406 ISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
           +  +L+D Y KCG   DA+ +FN M    V    +++ A+++     G      + F+ M
Sbjct: 296 VCNALIDTYAKCGSMNDAVKVFNVMEFKDV----VSWNAMVTGYTQSGNFGAAFELFENM 351

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF---EADVGMWSSILRGCVAHGD 520
           + + +I  ++  +S ++  +A+ GC  EA++  +QM     E +     S+L  C + G 
Sbjct: 352 R-KENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGA 410

Query: 521 KGLGRKV 527
              G ++
Sbjct: 411 LSQGMEI 417


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 305/659 (46%), Gaps = 107/659 (16%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L++C     I +G ++H   +K+G  L+  L  A  L+  Y RC     A  +F EMP  
Sbjct: 140 LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCA--LMNFYGRCWGLEKANQVFHEMPNP 197

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA----------- 119
               WN  I   ++    +K ++LF    +K  FS       F KA+ A           
Sbjct: 198 EALLWNEAIILNLQSEKLQKGVELF----RKMQFS-------FLKAETATIVRVLQACGK 246

Query: 120 --ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
             AL   KQIH ++   GLD D  L + L+++Y K G    A +V + M+  +    +++
Sbjct: 247 MGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSM 306

Query: 178 ISGYANCGKMNDARRVF------DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
           IS YA  G +NDA  +F      D   D   V WN ++SG+  +    E L +  +M+  
Sbjct: 307 ISSYAALGFLNDAWSLFYELESSDMKPDI--VTWNCLLSGHFLHGYKEEVLNILQRMQGE 364

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           G   ++S++ SVL A S LGFL  GK+ HG+  + G   DV V ++L+D Y K    + A
Sbjct: 365 GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSA 424

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----------------- 334
             +F  +K  +    N++++ YS  G  EDA  +   M  + +                 
Sbjct: 425 QAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMW 484

Query: 335 ----------------------ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
                                 +SW ++I G SQ G+  ++L  F  M +  +  +  S+
Sbjct: 485 GCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASI 544

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------- 417
             ++ ACA++S L+ G+++       G   D  ++T+L+D Y K                
Sbjct: 545 TCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQN 604

Query: 418 ------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                             G +A+++FNEM+  GV P  ITFTA+LSAC + GL+ EG K+
Sbjct: 605 KTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKY 664

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           FD+M   Y I P +EHY CMVDL  RAG L+EA +LI  MP + D  +W ++L  C  H 
Sbjct: 665 FDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHK 724

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +       A+ + +L+P N+  YI + ++++    WE    +R++M    V      SW
Sbjct: 725 NLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSW 783



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 155/374 (41%), Gaps = 46/374 (12%)

Query: 164 NMMKEPD----DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
            M+K P     D     LIS Y   G    A  VF      + + WNS +  + S+    
Sbjct: 55  QMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSL 114

Query: 220 EALL-LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
             +L +F ++   GV+ D+   +  L  C+ +  +  G ++HG   K G   DV +  AL
Sbjct: 115 HIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCAL 174

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           ++ Y +                               C  +E A  +F  MPN   + WN
Sbjct: 175 MNFYGR-------------------------------CWGLEKANQVFHEMPNPEALLWN 203

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
             I+   Q+    + ++LF  M    L+ +  ++  V+ AC  + +L   +Q+   V   
Sbjct: 204 EAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRF 263

Query: 399 GLDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
           GLDSD  +   L+  Y K G   LA  +F+ M N        ++ +++S+    G + + 
Sbjct: 264 GLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTS----SWNSMISSYAALGFLNDA 319

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILR 513
              F  ++    + P+I  ++C++      G   E +N++++M    F+ +    +S+L+
Sbjct: 320 WSLFYELE-SSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQ 378

Query: 514 GCVAHGDKGLGRKV 527
                G   +G++ 
Sbjct: 379 AISELGFLNMGKET 392


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 178/573 (31%), Positives = 273/573 (47%), Gaps = 114/573 (19%)

Query: 56  NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNML 109
           NP    L    + + N FSWN++I    + G   ++L+ F+ M      P ++ F   + 
Sbjct: 101 NPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIK 160

Query: 110 ISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
               + + L  L  G+Q H   L+ G                                EP
Sbjct: 161 ----SCSALLDLHSGRQAHQQALIFGF-------------------------------EP 185

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-- 227
           D F  SAL+  Y+ CG++ DAR +FD  +  + V W SMI+GY+ N++   ALLLF +  
Sbjct: 186 DLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFL 245

Query: 228 MRRNG------VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281
           +  +G      V  D   + SVLSACS +      + VHG   K G   D+ V + L+D 
Sbjct: 246 VEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDA 305

Query: 282 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
           Y+K                               CG +  ++ +F  M  + +ISWNS+I
Sbjct: 306 YAK-------------------------------CGELGVSRRVFDGMAERDVISWNSII 334

Query: 342 VGLSQNGSPIEALDLFCNMNK-LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
              +QNG   E++++F  M K  ++  +  +L++V+ ACA+  S  LG+ +  +V  +GL
Sbjct: 335 AVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGL 394

Query: 401 DSDQIISTSLVDFYCKCGY---------------------------------DALALFNE 427
           +S+  + TS++D YCKCG                                  +AL +F E
Sbjct: 395 ESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYE 454

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M   GVKP  ITF ++L+AC H GL++EG  WF AM  ++ ++P +EHY CMVDL  RAG
Sbjct: 455 MNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAG 514

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
            L EA +LI+ M    D  +W ++L  C  H +  LG   A ++ ELDP+N   Y+ LS+
Sbjct: 515 YLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSN 574

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           I+A +G WE    +R +M+   + K PG S  D
Sbjct: 575 IYADAGRWEDVERMRILMKNSGLVKPPGFSLVD 607



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 223/492 (45%), Gaps = 86/492 (17%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           ++SC+    +H G+Q H   L  G     L +++ L+ MY +CG   DA  LFDE+  RN
Sbjct: 159 IKSCSALLDLHSGRQAHQQALIFG-FEPDLFVSSALVDMYSKCGELRDARTLFDEISHRN 217

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN------------MLISGFAKADLA 119
             SW +MI G+++     ++L LF     +   S               ++S  ++    
Sbjct: 218 IVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEK 277

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           ++  G  +H  ++  G + D  + ++L++ Y KCG+   + +V + M E D    +++I+
Sbjct: 278 SITEG--VHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIA 335

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DAS 238
            YA                                N   TE++ +FH+M ++G +  +A 
Sbjct: 336 VYAQ-------------------------------NGMSTESMEIFHRMVKDGEINYNAV 364

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL++VL AC+  G    GK +H    K+G+  +V V ++++D Y K              
Sbjct: 365 TLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCK-------------- 410

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            CG++E A+  F  M  K++ SW++M+ G   +G   EAL++F 
Sbjct: 411 -----------------CGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFY 453

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS--TSLVDFYCK 416
            MN   ++ +  +  SV++AC++   LE G   F  ++    D +  +     +VD   +
Sbjct: 454 EMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMS-HEFDVEPGVEHYGCMVDLLGR 512

Query: 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEH 475
            GY   A F+ ++   ++P  + + A+L AC     V  G+    A K  + +DP+   +
Sbjct: 513 AGYLKEA-FDLIKGMKLRPDFVVWGALLGACRMHKNVDLGE--ISARKL-FELDPKNCGY 568

Query: 476 YSCMVDLFARAG 487
           Y  + +++A AG
Sbjct: 569 YVLLSNIYADAG 580


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 177/557 (31%), Positives = 277/557 (49%), Gaps = 72/557 (12%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAK 115
           A  +F+ +   N   WN MI G         SL L+  M       N +++  L+   AK
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           +       G+QIH  +L  G D D  + +SL+++Y +      A +V +     D    +
Sbjct: 77  SK--TFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYT 134

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           ALI+GYA+ G +  A+++FD       V WN+MISGY       EAL LF +M +  V  
Sbjct: 135 ALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRP 194

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D ST  +VLSAC+  G +E G+QVH        +DD              G  S+     
Sbjct: 195 DESTYVTVLSACAHSGSIELGRQVHSW------VDD-------------HGFDSN----- 230

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
             LK+     +N +I +YS CG +E A  +F+ +  K +ISWN++I G +      EAL 
Sbjct: 231 --LKI-----VNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALL 283

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDF 413
           LF  M +     +  ++ SV+ ACA++ ++++G    V+    + G+ +   + TSL+D 
Sbjct: 284 LFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDM 343

Query: 414 YCKCG-------------------YDALA--------------LFNEMRNTGVKPTIITF 440
           Y KCG                   ++A+               LF+ MR  G++P  ITF
Sbjct: 344 YAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITF 403

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H G++  G+  F +M   Y + P++EHY CM+DL   +G   EA  +I  M 
Sbjct: 404 VGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTME 463

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E D  +W S+L+ C  HG+  L    A+ +I+++PEN  +YI LS+I+A++G WE  + 
Sbjct: 464 MEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVAR 523

Query: 561 IRDIMREKHVGKLPGCS 577
           IR ++  K + K+PGCS
Sbjct: 524 IRALLNGKCMKKVPGCS 540



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 138/518 (26%), Positives = 231/518 (44%), Gaps = 112/518 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H   LK G  +  L +   L+ MY++     DA  +FD    R
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLG-FDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHR 128

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------------- 115
           +  S+ A+I G+   G    + +LF+ +P K+  SWN +ISG+A+               
Sbjct: 129 DVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM 188

Query: 116 ------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
                             A   ++E G+Q+HS +  +G D +  + ++L++LY KCG+  
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVE 248

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
           +A                        CG       +F   +    + WN++I GY   N 
Sbjct: 249 TA------------------------CG-------LFQGLSYKDVISWNTLIGGYTHMNL 277

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK--VGVIDDVIVA 275
             EALLLF +M R+G   +  T+ SVL AC+ LG ++ G+ +H +  K   GV +   + 
Sbjct: 278 YKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 337

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
           ++L+D Y+K                               CG IE A  +F +M +KSL 
Sbjct: 338 TSLIDMYAK-------------------------------CGDIEAAHQVFNSMLHKSLS 366

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           SWN+MI G + +G    + DLF  M K+ +  D  +   ++SAC++   L+LG  +F  +
Sbjct: 367 SWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 426

Query: 396 TIIGLDSDQIISTSLVDFYCKC---GYDAL-ALFNEMRNT-GVKPTIITFTAILSACDHC 450
           T      D  ++  L  + C     G+  L     EM NT  ++P  + + ++L AC   
Sbjct: 427 T-----QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMH 481

Query: 451 GLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAG 487
           G V+  + +   +     I+PE    Y  + +++A AG
Sbjct: 482 GNVELAESFAQNL---IKIEPENPSSYILLSNIYASAG 516


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 177/588 (30%), Positives = 281/588 (47%), Gaps = 66/588 (11%)

Query: 25   KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
            K+LH +++  G+ N    ++  L    +   +   A  +FD++     F WN +I G  +
Sbjct: 470  KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQ 529

Query: 85   LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVL 142
                  ++  +           N+      KA   + AL  G+Q+H+HI   GL  D  +
Sbjct: 530  SDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFV 589

Query: 143  GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
             +SL++LY                               A CG +  AR VFD       
Sbjct: 590  SNSLIHLY-------------------------------AACGNLCYARSVFDEMVVKDV 618

Query: 203  VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
            V WNS+I GY   N   + L LF  M+  GV  D  T+  V+SAC+ LG       +  +
Sbjct: 619  VSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRY 678

Query: 263  ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
                 +  DV + + L+D + +RG    A K+F  +KV + + +N MI  Y+    I  A
Sbjct: 679  IEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSA 738

Query: 323  KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
            + IF  +P K LISW+SMI G SQ     +AL++F  M +  ++ D   +ASV+S+CA++
Sbjct: 739  RKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHL 798

Query: 383  SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNT--------- 431
             +L+LG+ V   V    + +D I+  SL+D Y KCG   +AL +F EM+           
Sbjct: 799  GALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSII 858

Query: 432  ----------------------GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                                  G +P  +TF  +L AC +  LV+EG   F++MK  Y +
Sbjct: 859  IGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSL 918

Query: 470  DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            +P+++HY C+VDL  RAG L +A+  I +MP + D  +W  +L  C  HGD  +   V +
Sbjct: 919  EPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTK 978

Query: 530  RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            ++ EL+P N+  Y  LS+ +A++  W ++  +R  M +  V K PGCS
Sbjct: 979  KLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCS 1026



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 206/414 (49%), Gaps = 39/414 (9%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A +VFDR        W++++  Y       +AL LF   R +   +D       L AC+ 
Sbjct: 47  AHQVFDRRPTP----WHALLKAYSHGPHPQDALQLFRHARWHAA-DDTYAFTFALKACAG 101

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           LG+     Q+HG   + G      V +AL++ Y   G  +D+   F E+ V + +  N +
Sbjct: 102 LGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVV 161

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT ++  G +E A+ +F  MP ++++SW+ MI G ++   P+EA+ LF  M    +   +
Sbjct: 162 ITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSE 221

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            ++ +V+ A +N+  + +GE +       GL  D  +  SL+D Y K G           
Sbjct: 222 ITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDE 281

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                    A+ LF +MR  G++P  ITF ++L AC H GLV++
Sbjct: 282 MLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQ 341

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G  +F +M ++Y+I+P+++H+ C++D+  RAG L EA  +I   P E +  +W ++L  C
Sbjct: 342 GVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCC 401

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
             +G+  +G +  ++++ L+ E    ++ LS++      +  + ++R ++ +++
Sbjct: 402 SKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRN 455



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 247/498 (49%), Gaps = 50/498 (10%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            +L++C   ++++ G+Q+H H  K G+L S + ++N L+ +Y  CGN   A  +FDEM  +
Sbjct: 558  ILKACARINALNEGEQMHNHITKLGLL-SDIFVSNSLIHLYAACGNLCYARSVFDEMVVK 616

Query: 71   NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK-ADLAALEYGK 125
            +  SWN++I G+ +    +  L LF +M     + +  +   ++S   +  D +  +Y  
Sbjct: 617  DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADY-- 674

Query: 126  QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
             +  +I    ++ D  LG++LV+ +G+ G   SA +V   MK  +   ++A+I+ YA   
Sbjct: 675  -MVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQ 733

Query: 186  KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
             +  AR++FD+      + W+SMISGY   N  ++AL +F +M+R  V  DA  +ASV+S
Sbjct: 734  DIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVS 793

Query: 246  ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            +C+ LG L+ GK VH +  +  +  D I+ ++L+D Y K G   +A ++F E+K  DT  
Sbjct: 794  SCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDT-- 851

Query: 306  LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                                         +SWNS+I+GL+ NG   E+L+LF  M     
Sbjct: 852  -----------------------------LSWNSIIIGLANNGFEKESLNLFQAMLTEGF 882

Query: 366  RMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGY--DAL 422
            R +  +   V+ ACAN   +E G   F  +  +  L+        +VD   + G    AL
Sbjct: 883  RPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKAL 942

Query: 423  ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVD 481
                EM    + P  + +  +L +C+  G V   +      K    ++P    +Y+ + +
Sbjct: 943  RFITEM---PIDPDPVVWRILLGSCNTHGDVAIAEI---VTKKLNELEPSNSGNYTLLSN 996

Query: 482  LFARAGCLNEAVNLIEQM 499
             +A A   +EA+N+ + M
Sbjct: 997  AYASAHRWSEAMNVRQCM 1014



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 122/552 (22%), Positives = 227/552 (41%), Gaps = 97/552 (17%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           QLH   ++KG    T  +   L+ +Y+ CG   D+ + F+EMP +N  SWN +I GF   
Sbjct: 110 QLHGLVVRKGFEFQTY-VHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGW 168

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----------------------------- 116
           G  E +  LF  MP +N  SW+ +I G+ +A                             
Sbjct: 169 GEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVV 228

Query: 117 ----DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
               ++  +  G+ +H +    GL +D  +G+SL++LY K G                  
Sbjct: 229 PALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGS----------------- 271

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRN 231
                         + ++ RVFD   D  + V W S+ISG+  +    +A+ LF  MRR 
Sbjct: 272 --------------IQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRA 317

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRGMPSD 290
           G+  +  T  SVL ACS  G +E G         +  +  DV     ++D   + G   +
Sbjct: 318 GIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLRE 377

Query: 291 ACKLFSELKV-YDTILLNTMITVYSSCGRIEDAKHIFRTMP------NKSLISWNSMIVG 343
           A ++  +  V  +  +  T++   S  G +E  +   + +           +  ++M+  
Sbjct: 378 AEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTE 437

Query: 344 LSQ--NGSPIEAL-------DLFCNMNKLDL--RMDKFSLASVISACANISSLELGEQVF 392
           L +  +   +  L         F N+ +++   R+  + + S +  C    S  L     
Sbjct: 438 LRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAI 497

Query: 393 ARVTII----GLDSDQIISTSLVDFYCK------CGYDALALFNEMRNTGVKPTIITFTA 442
            +  ++      D  +  +T L +   +         DA+A + + +  G+ P  +TF  
Sbjct: 498 LQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPF 557

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           IL AC     + EG++  + +  +  +  +I   + ++ L+A  G L  A ++ ++M  +
Sbjct: 558 ILKACARINALNEGEQMHNHIT-KLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK 616

Query: 503 ADVGMWSSILRG 514
            DV  W+S++ G
Sbjct: 617 -DVVSWNSLICG 627


>gi|242045336|ref|XP_002460539.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
 gi|241923916|gb|EER97060.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
          Length = 630

 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 167/564 (29%), Positives = 288/564 (51%), Gaps = 40/564 (7%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G+   A  +FD MPRR+  +WNAM+  + + G    +L LF+  P  + FS  +  + 
Sbjct: 23  RAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFSRAPAPDAFS--LTAAL 80

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
            A A L +   G Q+H+ +L  GL     +G+SL+++Y KC     A +    M+E +  
Sbjct: 81  SAAAALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKCARAEDAARAFGEMRERNAL 140

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
              +L+  Y     +  A+ +FD   + ++V WN+++ GY  +      LLLF+KMR  G
Sbjct: 141 SWCSLLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGNANHCLLLFNKMRMAG 200

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +  D +TL  ++ AC+ L     G  +H    + G      V+++L+  Y+K  +  DA 
Sbjct: 201 LTCDDATLCILVDACTELANPSAGSAIHKIVVQSGWNAMAEVSNSLISLYTKFSLLDDAV 260

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
           ++F  ++V   +  N++I  Y   G +E A  +F ++P  ++ISW +MI GL++NG   E
Sbjct: 261 RIFESMEVQTIVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWTAMIGGLARNGLADE 320

Query: 353 ALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           AL LF  M   + +  D F+  +V+ ACA  +SL  G  V  RV   G  S   ++ SL+
Sbjct: 321 ALILFVEMLAHEHIHPDDFTFGAVLHACATAASLASGRMVHCRVFQSGFVSYLYVANSLI 380

Query: 412 DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
           D Y KCG                                  +AL +++ M++  V P  +
Sbjct: 381 DMYAKCGDLEGGTNVFSTIVNKDLVSWNTMLFGFAINGLPNEALVVYDSMKSHDVCPDEV 440

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE- 497
           TFT +L+AC H GL++ G+ +F+ M   + I P+ EH SC++D++AR+G + +A+ +++ 
Sbjct: 441 TFTGLLTACSHSGLLEHGKTFFELMVSVHGIQPKPEHLSCILDMYARSGNITKAMEMLDR 500

Query: 498 --QMPFEADVGMWSSILRGC-VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
             +M    +  +  ++L  C + H +  + RK  + M+         Y+ LS++F  +G+
Sbjct: 501 YSEMIQTHNSDIREALLSACSLEHLNFSVARKAVKDMVATKSAGDVGYVMLSNLFCATGQ 560

Query: 555 WEKSSLIRDIMREKHVGKLPGCSW 578
           W ++  +R  M E  + K PGCSW
Sbjct: 561 WNQAERVRIAMAEYGIKKSPGCSW 584



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 214/467 (45%), Gaps = 81/467 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G QLH   L+ G L + LP+ N L+ MY +C    DA   F EM  RN  SW ++++ ++
Sbjct: 92  GAQLHARLLRVG-LRALLPVGNSLISMYAKCARAEDAARAFGEMRERNALSWCSLLDAYV 150

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--------------------------- 116
                  + +LF+ MP +N+ +WN L+ G++++                           
Sbjct: 151 ASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGNANHCLLLFNKMRMAGLTCDDATLCI 210

Query: 117 ------DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 170
                 +LA    G  IH  ++ +G +  + + +SL++LY K    + A ++   M+   
Sbjct: 211 LVDACTELANPSAGSAIHKIVVQSGWNAMAEVSNSLISLYTKFSLLDDAVRIFESMEVQT 270

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-R 229
               ++LI  Y   G +  A  +F    +T+ + W +MI G   N    EAL+LF +M  
Sbjct: 271 IVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWTAMIGGLARNGLADEALILFVEMLA 330

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
              +  D  T  +VL AC++   L  G+ VH    + G +  + VA++L+D Y+K     
Sbjct: 331 HEHIHPDDFTFGAVLHACATAASLASGRMVHCRVFQSGFVSYLYVANSLIDMYAK----- 385

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
                                     CG +E   ++F T+ NK L+SWN+M+ G + NG 
Sbjct: 386 --------------------------CGDLEGGTNVFSTIVNKDLVSWNTMLFGFAINGL 419

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA-RVTIIGLDSDQIIST 408
           P EAL ++ +M   D+  D+ +   +++AC++   LE G+  F   V++ G+       +
Sbjct: 420 PNEALVVYDSMKSHDVCPDEVTFTGLLTACSHSGLLEHGKTFFELMVSVHGIQPKPEHLS 479

Query: 409 SLVDFYCKCG-----YDALALFNEM---RNTGVKPTIITFTAILSAC 447
            ++D Y + G      + L  ++EM    N+ ++       A+LSAC
Sbjct: 480 CILDMYARSGNITKAMEMLDRYSEMIQTHNSDIR------EALLSAC 520



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 172/399 (43%), Gaps = 50/399 (12%)

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
           V  +S +   G+ GD  SA  V + M   D    +A+++ YA  G+  DA  +F R    
Sbjct: 12  VAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFSRAP-- 69

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
                                              DA +L + LSA ++L     G Q+H
Sbjct: 70  ---------------------------------APDAFSLTAALSAAAALRSPTAGAQLH 96

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
               +VG+   + V ++L+  Y+K     DA + F E++  + +   +++  Y +   + 
Sbjct: 97  ARLLRVGLRALLPVGNSLISMYAKCARAEDAARAFGEMRERNALSWCSLLDAYVASDDLR 156

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            A+ +F  MPN++ ++WN++++G S++G+    L LF  M    L  D  +L  ++ AC 
Sbjct: 157 LAQELFDEMPNRNNVAWNTLLMGYSRSGNANHCLLLFNKMRMAGLTCDDATLCILVDACT 216

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTII 438
            +++   G  +   V   G ++   +S SL+  Y K     DA+ +F  M       TI+
Sbjct: 217 ELANPSAGSAIHKIVVQSGWNAMAEVSNSLISLYTKFSLLDDAVRIFESME----VQTIV 272

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           ++ +++ A    G V++    F ++      +  +  ++ M+   AR G  +EA+ L  +
Sbjct: 273 SWNSLIDAYMKLGCVEKATSLFGSVP-----ETNVISWTAMIGGLARNGLADEALILFVE 327

Query: 499 M----PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           M        D   + ++L  C        GR V  R+ +
Sbjct: 328 MLAHEHIHPDDFTFGAVLHACATAASLASGRMVHCRVFQ 366



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 46/235 (19%)

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G    ++ A++ + +  + G  + A  +F  +   D +  N M+T Y+  G+  DA  +F
Sbjct: 6   GPFAGLVAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALF 65

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
              P                  +P                 D FSL + +SA A + S  
Sbjct: 66  SRAP------------------AP-----------------DAFSLTAALSAAAALRSPT 90

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAIL 444
            G Q+ AR+  +GL +   +  SL+  Y KC    DA   F EMR    +   +++ ++L
Sbjct: 91  AGAQLHARLLRVGLRALLPVGNSLISMYAKCARAEDAARAFGEMR----ERNALSWCSLL 146

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
            A      ++  Q+ FD M  + ++      ++ ++  ++R+G  N  + L  +M
Sbjct: 147 DAYVASDDLRLAQELFDEMPNRNNV-----AWNTLLMGYSRSGNANHCLLLFNKM 196


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 180/586 (30%), Positives = 286/586 (48%), Gaps = 94/586 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+++H   LK G  +    +A  L+ +Y R G    A  +F +MP R+  SWNAMI GF 
Sbjct: 166 GEKMHCWVLKMGFEHDVY-VAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFC 224

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLG 143
           + G+  ++L++ + M  +             K D   +       S +L      + V+G
Sbjct: 225 QNGNVAEALRVLDRMKTEE-----------VKMDTVTV-------SSMLPICAQSNDVVG 266

Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
             LV+LY           V+    E D F  +ALI+ Y+  G++ DA+RVFD       V
Sbjct: 267 GVLVHLY-----------VIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLV 315

Query: 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
            WNS+I+ Y  N++   AL  F +M   G+  D  T+ S+ S    L     G+ VHG  
Sbjct: 316 SWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFV 375

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
            +                          C+        D ++ N ++ +Y+  G I+ A+
Sbjct: 376 VR--------------------------CRWLE----VDIVIGNALVNMYAKLGSIDCAR 405

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRMDKFSLASVISACANI 382
            +F  +P++ +ISWN++I G +QNG   EA+D +  M +   +  ++ +  S++ A +++
Sbjct: 406 AVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHV 465

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------------- 419
            +L+ G ++  R+    L  D  ++T L+D Y KCG                        
Sbjct: 466 GALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAII 525

Query: 420 ----------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                      AL LF +MR  GVK   ITF ++LSAC H GLV E Q  FD M+ +Y I
Sbjct: 526 SSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRI 585

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P ++HY CMVDLF RAG L +A NL+  MP +AD  +W ++L  C  HG+  LG   ++
Sbjct: 586 KPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASD 645

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
           R++E+D EN   Y+ LS+I+A  G+WE +  +R + R++ + K PG
Sbjct: 646 RLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPG 691



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 140/557 (25%), Positives = 237/557 (42%), Gaps = 119/557 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + +SC    +I+V KQLH   L  G     + +  +L+ +Y   G+ + +   F  + R+
Sbjct: 57  VFRSCT---NINVAKQLHALLLVLGKAQDVV-LLTQLVTLYATLGDLSLSSTTFKHIQRK 112

Query: 71  NCFSWNAMIEGFMKLGHKEKSL----QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           N FSWN+M+  +++ G    S+    +L ++   + DF          KA L+ L  G++
Sbjct: 113 NIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDF---YTFPPVLKACLS-LADGEK 168

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  +L  G + D  + +SL++LY + G    A++V   M   D    +A+ISG+   G 
Sbjct: 169 MHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGN 228

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +A RV DR                               M+   V  D  T++S+L  
Sbjct: 229 VAEALRVLDR-------------------------------MKTEEVKMDTVTVSSMLPI 257

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+    +  G  VH +  K G+  DV V++AL++ YSK G   DA ++F  ++V D    
Sbjct: 258 CAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRD---- 313

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                                      L+SWNS+I    QN  P+ AL  F  M  + +R
Sbjct: 314 ---------------------------LVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMR 346

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCG------- 418
            D  ++ S+ S    +S   +G  V   V     L+ D +I  +LV+ Y K G       
Sbjct: 347 PDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARA 406

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         DA  +  E R   + P   T+ +IL A  H
Sbjct: 407 VFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRT--IVPNQGTWVSILPAYSH 464

Query: 450 CGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
            G +++G K    + K    +D  +   +C++D++ + G L +A++L  ++P E  V  W
Sbjct: 465 VGALQQGMKIHGRLIKNCLFLDVFVA--TCLIDMYGKCGRLEDAMSLFYEIPQETSVP-W 521

Query: 509 SSILR--GCVAHGDKGL 523
           ++I+   G   HG+K L
Sbjct: 522 NAIISSLGIHGHGEKAL 538



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 38/240 (15%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G+ +H   ++   L   + I N L+ MY + G+   A  +F+++P R+  SWN +I G+
Sbjct: 367 IGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGY 426

Query: 83  MKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
            + G   +++  +N+M +      N  +W  ++  ++   + AL+ G +IH  ++ N L 
Sbjct: 427 AQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSH--VGALQQGMKIHGRLIKNCLF 484

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            D  + + L+++YGK                               CG++ DA  +F   
Sbjct: 485 LDVFVATCLIDMYGK-------------------------------CGRLEDAMSLFYEI 513

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
              +SV WN++IS    +    +AL LF  MR +GV  D  T  S+LSACS  G ++  +
Sbjct: 514 PQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQ 573



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  G ++H   +K  +      +A  L+ MY +CG   DA+ LF E+P+     WNA+I
Sbjct: 467 ALQQGMKIHGRLIKNCLFLDVF-VATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAII 525

Query: 80  EGFMKLGHKEKSLQLFNVM 98
                 GH EK+LQLF  M
Sbjct: 526 SSLGIHGHGEKALQLFKDM 544


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 184/610 (30%), Positives = 294/610 (48%), Gaps = 79/610 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDEMPR 69
           L Q C +   +   KQ+H   L+   L+     +           +  D A  +FD++P+
Sbjct: 145 LFQQCTSFKQL---KQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQ 201

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKADLAALEYG 124
            N +SWN +I          +S+ +F  M        N F++ +LI   A A+      G
Sbjct: 202 PNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIK--AVAERRCFLVG 259

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K +H      G+   +  G                          D F L++LI  YA+C
Sbjct: 260 KAVH------GMAIKTSFGD-------------------------DVFVLNSLIHFYASC 288

Query: 185 GKMNDARRVFD--RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           G ++ A  VF+     +   V WNSM++G++      +AL LF +MR  GV  +A T+ S
Sbjct: 289 GHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVS 348

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           V+SAC+    L  G++V  +  +  ++ ++ V +A +D + K G    A  LF  ++  D
Sbjct: 349 VMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRD 408

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF--CNM 360
            +   T+I  Y+       A+ IF +MP K + +WN +I G  Q+G P EAL +F    +
Sbjct: 409 VVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQL 468

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            K   R D+ +L S +SACA + ++++GE +   +    +  ++ ++TSL+D Y K G  
Sbjct: 469 TKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDV 528

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                            A+ LF +M+ T VKP  +TFT +L AC
Sbjct: 529 EKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCAC 588

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV EG++ FD M+  Y + P+ +HYSCMVD+  RAG L EA+  IE MP      +
Sbjct: 589 SHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASV 648

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L  C  HG+  L  K   R++E++P N  AY+ LS+++A +G+WE  S +R  MR+
Sbjct: 649 WGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRD 708

Query: 568 KHVGKLPGCS 577
             + K  GCS
Sbjct: 709 SGLKKETGCS 718


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 180/597 (30%), Positives = 288/597 (48%), Gaps = 109/597 (18%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ+H   L  G+  S   I  +L+      G+ T A  +FD++PR   F WNA+I G+ +
Sbjct: 38  KQIHARLLVLGLQFSGFLI-TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSR 96

Query: 85  LGHKEKSL------QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
             H + +L      QL  V P  + F++  L+   A + L+ L+ G+ +H+ +   G D 
Sbjct: 97  NNHFQDALLMYSNMQLARVSP--DSFTFPHLLK--ACSGLSHLQMGRFVHAQVFRLGFDA 152

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD--R 196
           D                                F  + LI+ YA C ++  AR VF+   
Sbjct: 153 DV-------------------------------FVQNGLIALYAKCRRLGSARTVFEGLP 181

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             + + V W +++S Y  N E  EAL +F +MR+  V  D   L SVL+A + L  L+ G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           + +H    K+G+                            E++    I LNTM   Y+ C
Sbjct: 242 RSIHASVVKMGL----------------------------EIEPDLLISLNTM---YAKC 270

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G++  AK +F  M + +LI WN+MI G ++NG   EA+D+F  M   D+R D  S+ S I
Sbjct: 271 GQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAI 330

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
           SACA + SLE    ++  V       D  IS++L+D + KCG                  
Sbjct: 331 SACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVV 390

Query: 419 ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                           +A++L+  M   GV P  +TF  +L AC+H G+V+EG  +F+ M
Sbjct: 391 VWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM 450

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
              + I+P+ +HY+C++DL  RAG L++A  +I+ MP +  V +W ++L  C  H    L
Sbjct: 451 A-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVEL 509

Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           G   A+++  +DP N   Y+QLS+++A +  W++ + +R  M+EK + K  GCSW +
Sbjct: 510 GEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 38/261 (14%)

Query: 1   MDTRIDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNP 57
           MD + D++A   +L +      +  G+ +H   +K G+ +   L I+  L  MY +CG  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS--LNTMYAKCGQV 273

Query: 58  TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AK 115
             A +LFD+M   N   WNAMI G+ K G+  +++ +F+ M  K+     + I+    A 
Sbjct: 274 ATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           A + +LE  + ++ ++  +    D  + S+L++++ KCG    A  V +   + D    S
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           A+I GY   G+                                 EA+ L+  M R GV  
Sbjct: 394 AMIVGYGLHGRAR-------------------------------EAISLYRAMERGGVHP 422

Query: 236 DASTLASVLSACSSLGFLEHG 256
           +  T   +L AC+  G +  G
Sbjct: 423 NDVTFLGLLMACNHSGMVREG 443


>gi|414589997|tpg|DAA40568.1| TPA: hypothetical protein ZEAMMB73_314346 [Zea mays]
          Length = 627

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 166/564 (29%), Positives = 288/564 (51%), Gaps = 40/564 (7%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G+   A  +FD MPRR+  +WNAM+  +++ G    +L LF+  P  + FS    +S 
Sbjct: 24  RAGDAASARAMFDAMPRRDAVAWNAMLTAYVRAGQPRDALTLFSRAPAPDAFSLTAALSA 83

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
            A         G Q+H+ ++  GL     +G++LV++Y KC   + A +    M+E +  
Sbjct: 84  AAALRSPVA--GAQLHARLIRAGLRALLPVGNTLVDMYAKCARADDAARAFGEMRERNAL 141

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
              +L+  Y     +  A+ +FD+  + ++V WN+++ GY  +    + LLLF+KMR  G
Sbjct: 142 SWCSLLHAYVVSDHLMLAQELFDQMPNRNNVAWNTLLMGYSRSGNANQCLLLFNKMRAEG 201

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +  D +TL  +  AC+ L     G  +H  A + G      V+++L+  YSK  +  DA 
Sbjct: 202 MACDGATLCILADACTELAHPSAGSAIHKVAVQSGWSAMAEVSNSLISLYSKFSLLDDAV 261

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
           ++F  ++V   +  N++I  Y   G +E A  +FR +P  ++ISW +MI GL++NG   E
Sbjct: 262 RIFESMEVRTIVSWNSLIDSYMKLGCVEKATSLFRRVPETNVISWTAMIGGLARNGCADE 321

Query: 353 ALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           AL LF  M   + +  D F+  SV+ ACA  +SL  G  V  R    G  +   ++ SL+
Sbjct: 322 ALALFIVMLAHEHIHPDDFTFGSVLHACATAASLASGRMVHCRAFRSGFAAYLYVANSLM 381

Query: 412 DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
           D Y KCG                                  +AL +++ M++  V P  +
Sbjct: 382 DMYAKCGDVEGGTNVFGAIVNKDLVSWNTMLFGFAINGWANEALVVYDSMKSHEVCPDEV 441

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE- 497
           TF  +L+AC+H GL++ G+ +F++M   + I P+ EH SC++D++AR+G + +A+ +++ 
Sbjct: 442 TFAGLLTACNHSGLLEHGESFFESMVSVHGIQPKPEHLSCILDMYARSGNITKAMEMLDL 501

Query: 498 --QMPFEADVGMWSSILRGC-VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
             +     +  +  ++L  C + H +  + RK  E M+         Y+ LS++F  +G+
Sbjct: 502 YSETIRAHNSDIREALLSACSLEHLNFRVARKAMEDMVATKSAGDVGYVMLSNLFCAAGQ 561

Query: 555 WEKSSLIRDIMREKHVGKLPGCSW 578
           W ++  +R  M E  + K PGCSW
Sbjct: 562 WNQAEQVRIAMAEHGIKKTPGCSW 585



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 210/468 (44%), Gaps = 81/468 (17%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
            G QLH   ++ G L + LP+ N L+ MY +C    DA   F EM  RN  SW +++  +
Sbjct: 92  AGAQLHARLIRAG-LRALLPVGNTLVDMYAKCARADDAARAFGEMRERNALSWCSLLHAY 150

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-------------------------- 116
           +   H   + +LF+ MP +N+ +WN L+ G++++                          
Sbjct: 151 VVSDHLMLAQELFDQMPNRNNVAWNTLLMGYSRSGNANQCLLLFNKMRAEGMACDGATLC 210

Query: 117 -------DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
                  +LA    G  IH   + +G    + + +SL++LY K    + A ++   M+  
Sbjct: 211 ILADACTELAHPSAGSAIHKVAVQSGWSAMAEVSNSLISLYSKFSLLDDAVRIFESMEVR 270

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 228
                ++LI  Y   G +  A  +F R  +T+ + W +MI G   N    EAL LF  M 
Sbjct: 271 TIVSWNSLIDSYMKLGCVEKATSLFRRVPETNVISWTAMIGGLARNGCADEALALFIVML 330

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
               +  D  T  SVL AC++   L  G+ VH  A + G    + VA++L+D Y+K    
Sbjct: 331 AHEHIHPDDFTFGSVLHACATAASLASGRMVHCRAFRSGFAAYLYVANSLMDMYAK---- 386

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                                      CG +E   ++F  + NK L+SWN+M+ G + NG
Sbjct: 387 ---------------------------CGDVEGGTNVFGAIVNKDLVSWNTMLFGFAING 419

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIIS 407
              EAL ++ +M   ++  D+ + A +++AC +   LE GE  F + V++ G+       
Sbjct: 420 WANEALVVYDSMKSHEVCPDEVTFAGLLTACNHSGLLEHGESFFESMVSVHGIQPKPEHL 479

Query: 408 TSLVDFYCKCG-----YDALALFNEM---RNTGVKPTIITFTAILSAC 447
           + ++D Y + G      + L L++E     N+ ++       A+LSAC
Sbjct: 480 SCILDMYARSGNITKAMEMLDLYSETIRAHNSDIR------EALLSAC 521



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 196/449 (43%), Gaps = 41/449 (9%)

Query: 174 LSALISGYANCGKMNDA---RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
           L A  S  A+ G+  DA   R +FD      +V WN+M++ Y+   +  +AL LF +   
Sbjct: 12  LVAATSRIASLGRAGDAASARAMFDAMPRRDAVAWNAMLTAYVRAGQPRDALTLFSR--- 68

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
                DA +L + LSA ++L     G Q+H    + G+   + V + L+D Y+K     D
Sbjct: 69  -APAPDAFSLTAALSAAAALRSPVAGAQLHARLIRAGLRALLPVGNTLVDMYAKCARADD 127

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
           A + F E++  + +   +++  Y     +  A+ +F  MPN++ ++WN++++G S++G+ 
Sbjct: 128 AARAFGEMRERNALSWCSLLHAYVVSDHLMLAQELFDQMPNRNNVAWNTLLMGYSRSGNA 187

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
            + L LF  M    +  D  +L  +  AC  ++    G  +       G  +   +S SL
Sbjct: 188 NQCLLLFNKMRAEGMACDGATLCILADACTELAHPSAGSAIHKVAVQSGWSAMAEVSNSL 247

Query: 411 VDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
           +  Y K     DA+ +F  M       TI+++ +++ +    G V++    F  +     
Sbjct: 248 ISLYSKFSLLDDAVRIFESME----VRTIVSWNSLIDSYMKLGCVEKATSLFRRVP---- 299

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQM----PFEADVGMWSSILRGCVAHGDKGLG 524
            +  +  ++ M+   AR GC +EA+ L   M        D   + S+L  C        G
Sbjct: 300 -ETNVISWTAMIGGLARNGCADEALALFIVMLAHEHIHPDDFTFGSVLHACATAASLASG 358

Query: 525 RKVAERMIELDPENACAYI----QLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           R V  R          AY+     L  ++A  G+ E  + +   +  K +      SW  
Sbjct: 359 RMVHCRAFR---SGFAAYLYVANSLMDMYAKCGDVEGGTNVFGAIVNKDL-----VSWNT 410

Query: 581 ---GIAFNCWFLDTMFLQLANFDEIKQHQ 606
              G A N W  + + +    +D +K H+
Sbjct: 411 MLFGFAINGWANEALVV----YDSMKSHE 435


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 180/611 (29%), Positives = 294/611 (48%), Gaps = 105/611 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            A  LQ+C     I +G Q+H   LK G +L+  + +AN L+ MY+R G   +A ++F  
Sbjct: 163 FAAALQACEDSSFIKLGMQIHAAILKSGRVLD--VYVANALVAMYVRFGKMPEAAVIFGN 220

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWNMLISGFAKADLAALE 122
           +  ++  +WN+M+ GF++ G   ++L+ F    N   + +  S   +I   A   L  L 
Sbjct: 221 LEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISII--VASGRLGYLL 278

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            GK+IH++ + NG D + ++G++L+++Y KC                   C         
Sbjct: 279 NGKEIHAYAIKNGFDSNILVGNTLIDMYAKC-------------------CC-------- 311

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
               M+   R FD       + W +  +GY  N    +AL L  +++  G+  DA+ + S
Sbjct: 312 ----MSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGS 367

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L AC  L  L   K++HG                    Y+ RG  SD            
Sbjct: 368 ILLACRGLNCLGKIKEIHG--------------------YTIRGGLSDP----------- 396

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            +L NT+I VY  CG I+ A  IF ++  K ++SW SMI     NG   +AL++F +M +
Sbjct: 397 -VLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
             L  D  +L S++SA  ++S+L+ G+++   +   G   +  IS +LVD Y +CG    
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVED 515

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                          A+ LF  M++  + P  ITF A+L AC H
Sbjct: 516 AYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSH 575

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV EG+ + + MK +Y ++P  EHY+C+VDL  R  CL EA  +++ M  E    +W 
Sbjct: 576 SGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWC 635

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           ++L  C  H +K +G   AE+++ELD +N   Y+ +S++FA +G W+    +R  M+   
Sbjct: 636 ALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSG 695

Query: 570 VGKLPGCSWAD 580
           + K PGCSW +
Sbjct: 696 LTKNPGCSWIE 706



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/565 (23%), Positives = 245/565 (43%), Gaps = 107/565 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C     +  G ++H   +K G  +S + + N L+ +Y +C +   A  LFD M  R
Sbjct: 64  LLKACGIVEDLFCGAEIHGLAIKYGC-DSFVFVVNSLVALYAKCNDINGARKLFDRMYVR 122

Query: 71  N-CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQI 127
           N   SWN++I  +   G   ++L LF+ M +    +     +   +A  D + ++ G QI
Sbjct: 123 NDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQI 182

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H+ IL +G   D  + ++LV +                               Y   GKM
Sbjct: 183 HAAILKSGRVLDVYVANALVAM-------------------------------YVRFGKM 211

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
            +A  +F        V WNSM++G+I N   +EAL  F+ ++   +  D  ++ S++ A 
Sbjct: 212 PEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVAS 271

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
             LG+L +GK++H +A K G   +++V + L+D Y+K                       
Sbjct: 272 GRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAK----------------------- 308

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                   C  +      F  M +K LISW +   G +QN   ++AL+L   +    + +
Sbjct: 309 --------CCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV 360

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------- 419
           D   + S++ AC  ++ L   +++    TI G  SD ++  +++D Y +CG         
Sbjct: 361 DATMIGSILLACRGLNCLGKIKEIHG-YTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIF 419

Query: 420 -------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                     AL +F+ M+ TG++P  +T  +ILSA      +K
Sbjct: 420 ESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLK 479

Query: 455 EGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +G++     ++  + ++  I +   +VD++AR G + +A  +        ++ +W++++ 
Sbjct: 480 KGKEIHGFIIRKGFILEGSISN--TLVDMYARCGSVEDAYKIFTCTK-NRNLILWTAMIS 536

Query: 514 GCVAHGDKGLGRKVAERMIELDPEN 538
              A+G  G G    E  + +  E 
Sbjct: 537 ---AYGMHGYGEAAVELFMRMKDEK 558



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 144/547 (26%), Positives = 238/547 (43%), Gaps = 121/547 (22%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           MY +CG+  DA ++FD+M  R+ F                               +WN +
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIF-------------------------------TWNAM 29

Query: 110 ISGFAK--ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM-M 166
           + G+      L ALE  +++  H+   G+ FDS     L+   G   D     ++  + +
Sbjct: 30  MGGYVSNGEALGALEMYREMR-HL---GVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAI 85

Query: 167 KEPDD---FCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEAL 222
           K   D   F +++L++ YA C  +N AR++FDR    + V+ WNS+IS Y  N   TEAL
Sbjct: 86  KYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEAL 145

Query: 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
            LF +M + GV+ +  T A+ L AC    F++ G Q+H    K G + DV VA+AL+  Y
Sbjct: 146 CLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMY 205

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
            + G   +A  +F  L+  D +  N+M+T                               
Sbjct: 206 VRFGKMPEAAVIFGNLEGKDIVTWNSMLT------------------------------- 234

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G  QNG   EAL+ F ++   DL+ D+ S+ S+I A   +  L  G+++ A     G DS
Sbjct: 235 GFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDS 294

Query: 403 DQIISTSLVDFYCKC--------------------------GY-------DALALFNEMR 429
           + ++  +L+D Y KC                          GY        AL L  +++
Sbjct: 295 NILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQ 354

Query: 430 NTGVKPTIITFTAILSACD--HC-GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
             G+        +IL AC   +C G +KE   +          DP +++   ++D++   
Sbjct: 355 MEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS---DPVLQN--TIIDVYGEC 409

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQ 544
           G ++ AV + E +  + DV  W+S++   V +G      +V   M E  L+P+    Y+ 
Sbjct: 410 GIIDYAVRIFESIECK-DVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPD----YVT 464

Query: 545 LSSIFAT 551
           L SI + 
Sbjct: 465 LVSILSA 471


>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 242/439 (55%), Gaps = 35/439 (7%)

Query: 116 ADLAALEYGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           AD  AL  GK++H H+ + GL    + L + L+N+Y KCG    A +V + M   + +  
Sbjct: 70  ADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSW 129

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + ++SGYA  G +  AR++FD+  +   V WN+M+  +       EAL  + + R+ G+ 
Sbjct: 130 NNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQ 189

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  + A VL+ C  L  +   +QVHG     G + +V+++S++LD Y K G+  DA KL
Sbjct: 190 CNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKL 249

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F E+   D +   TM++ Y+  G ++ A  +F  MP K+ +SW ++I G ++NG   +AL
Sbjct: 250 FDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKAL 309

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           +LF  M    +R D+F+ +S + ACA+I+SL+ G+Q+ A +  I    + I+ ++L+D Y
Sbjct: 310 ELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMY 369

Query: 415 CK----------------------------------CGYDALALFNEMRNTGVKPTIITF 440
            K                                  CG +A+ + ++M  +G KP  ITF
Sbjct: 370 SKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITF 429

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             IL+AC H GLV++G  +F++M   Y I P  EHY+C++DL  RAGC  E ++ +E+MP
Sbjct: 430 VVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMP 489

Query: 501 FEADVGMWSSILRGCVAHG 519
           ++ D  +W+++L  C  HG
Sbjct: 490 YKPDDRVWNALLGVCRIHG 508



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/482 (28%), Positives = 229/482 (47%), Gaps = 69/482 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D+R   LA LLQ C    ++  GK++HLH    G+      ++N L+ MY +CG   +A
Sbjct: 57  LDSRT--LASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEA 114

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI---------- 110
             +FD+M  RN +SWN M+ G+ KLG  + + +LF+ MP+K+  SWN ++          
Sbjct: 115 RKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWD 174

Query: 111 ----------------SGFAKADLAAL-----EYG--KQIHSHILVNGLDFDSVLGSSLV 147
                           +GF+ A +  +     E G  +Q+H  ILV G   + VL SS++
Sbjct: 175 EALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVL 234

Query: 148 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
           + Y KCG    A ++ + M   D    + ++SGYA  G M  A  +F    + + V W +
Sbjct: 235 DAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTA 294

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           +ISGY  N    +AL LF KM    V  D  T +S L AC+S+  L+HGKQ+H +  ++ 
Sbjct: 295 LISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRIN 354

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
              + IV SAL+D YSK                               CG +   + +F 
Sbjct: 355 FQPNTIVVSALIDMYSK-------------------------------CGSLGIGRKVFD 383

Query: 328 TMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
            M NK  ++ WN++I  L+Q+G   EA+ +  +M +   + DK +   +++AC++   ++
Sbjct: 384 LMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQ 443

Query: 387 LGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILS 445
            G   F  ++   G+   Q     L+D   + G     + +++     KP    + A+L 
Sbjct: 444 QGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFE-EVMDQLEKMPYKPDDRVWNALLG 502

Query: 446 AC 447
            C
Sbjct: 503 VC 504



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 21/212 (9%)

Query: 326 FRTMPNKSLIS--WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
           FRT P K          IV L +     EA+    N+ +  LR+D  +LAS++  CA+  
Sbjct: 14  FRTNPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSR 73

Query: 384 SLELGEQVFARVTIIGLDSD-QIISTSLVDFYCKCG--YDALALFNEM--RNTGVKPTII 438
           +L  G++V   + + GL      +S  L++ Y KCG   +A  +F++M  RN      + 
Sbjct: 74  ALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARN------LY 127

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL--- 495
           ++  +LS     G++K  +K FD M      + ++  ++ MV   A+ G  +EA+     
Sbjct: 128 SWNNMLSGYAKLGMIKPARKLFDKMP-----EKDVVSWNTMVIAHAQCGYWDEALRFYSE 182

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
             Q+  + +   ++ +L  CV   + GL R+V
Sbjct: 183 FRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQV 214


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 202/717 (28%), Positives = 338/717 (47%), Gaps = 159/717 (22%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           + + +YL  LL++C    S+   K++H HFLK    N+   + ++L ++Y+ C     A 
Sbjct: 6   EVKNNYL-HLLEACIQSKSLTEAKKIHQHFLKN-TSNADSSVLHKLTRLYLSCNQVVLAR 63

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAD 117
            LFDE+P  +   WN +I  +   G  + ++ L++ M     + N +++  ++   A + 
Sbjct: 64  RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK--ACSG 121

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVN----------------------------- 148
           L A+E G +IHSH  + GL+ D  + ++LV+                             
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAM 181

Query: 149 -----LYGKCGDFNSANQVLNMMKE----PDD------------------------FCL- 174
                LYG C D   A Q++  M+E    P+                         +C+ 
Sbjct: 182 IAGCSLYGLCDD---AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR 238

Query: 175 ----------SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
                     + L+  YA C  +  AR++FD     + V W++MI GY+ ++   EAL L
Sbjct: 239 RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALEL 298

Query: 225 FHKMRRNGVLEDA-----STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           F +M    +L+DA      TL SVL AC+ L  L  G+++H +  K+G            
Sbjct: 299 FDQM----ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLG------------ 342

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
                               V D +L NT++++Y+ CG I+DA   F  M  K  +S+++
Sbjct: 343 -------------------XVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSA 383

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           ++ G  QNG+   AL +F  M    +  D  ++  V+ AC+++++L+ G      + + G
Sbjct: 384 IVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRG 443

Query: 400 LDSDQIISTSLVDFYCKCG---------------------------------YDALALFN 426
             +D +I  +L+D Y KCG                                  +AL LF+
Sbjct: 444 FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFH 503

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           ++   G+KP  ITF  +LS+C H GLV EG+ WFDAM   + I P +EH  CMVD+  RA
Sbjct: 504 DLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRA 563

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G ++EA + I  MPFE DV +WS++L  C  H +  LG +V++++  L PE+   ++ LS
Sbjct: 564 GLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLS 623

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD--GIAFNCWFLDTMFLQLANFDE 601
           +I++ +G W+ ++ IR   ++  + K+PGCSW +  GI       D   LQL+  + 
Sbjct: 624 NIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINR 680



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 168/392 (42%), Gaps = 88/392 (22%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD     L  +L++C     +  G++LH + +K G +   L + N LL MY +CG   DA
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDIL-LGNTLLSMYAKCGVIDDA 366

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKAD 117
           +  FD M  ++  S++A++ G ++ G+   +L +F +M       D +  ML    A + 
Sbjct: 367 IRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLT-TMLGVLPACSH 425

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           LAAL++G   H +++V G   D+++ ++L+++Y KCG  + A +V N M   D       
Sbjct: 426 LAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHD------- 478

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                                    V WN+MI GY  +    EAL LFH +   G+  D 
Sbjct: 479 ------------------------IVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDD 514

Query: 238 STLASVLSACSSLGFLEHGK--------------QVHGHACKVGVIDDVIVASALLDT-- 281
            T   +LS+CS  G +  G+              ++    C V    D++  + L+D   
Sbjct: 515 ITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMV----DILGRAGLIDEAH 570

Query: 282 YSKRGMPSDA-----CKLFSELKVYDTILLNTMIT-------------------VYSSCG 317
           +  R MP +        L S  +++  I L   ++                   +YS+ G
Sbjct: 571 HFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 630

Query: 318 RIEDAKHI--------FRTMPNKSLISWNSMI 341
           R +DA HI         + +P  S I  N ++
Sbjct: 631 RWDDAAHIRITQKDWGLKKIPGCSWIEINGIV 662


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 166/537 (30%), Positives = 276/537 (51%), Gaps = 71/537 (13%)

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           +I+ + +LGH E + Q+F+  PQ    +WN +I  +++    A+     ++  +   G+ 
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRR--GAMFEALSLYHRMASEGVR 102

Query: 138 FDSVLGSSLVNLYGKCGDFNSAN----QVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
            DS   + ++    +  D  S      Q ++     D F  +A+++ YA CGKM++A RV
Sbjct: 103 PDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRV 162

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253
           FD+      V W +MI+G   N +  EA+ ++ +M +  V  D   +  ++ AC++LG  
Sbjct: 163 FDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHS 222

Query: 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
           + G  +HG+  +  +I DVIV ++L+D Y+K                             
Sbjct: 223 KMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKN---------------------------- 254

Query: 314 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
              G +E A  +FR M  K++ISW+++I G +QNG    AL L  +M     + D  SL 
Sbjct: 255 ---GHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLV 311

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------- 418
           SV+ AC+ +  L+LG+ V   + +  L  D + ST+++D Y KCG               
Sbjct: 312 SVLLACSQVGFLKLGKSVHGYI-VRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFR 370

Query: 419 ------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                              +AL+LF +MR T VKP   TF ++LSA  H GLV++G+ WF
Sbjct: 371 DSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWF 430

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
             M  +Y I P  +HY+CMVDL +RAG + EA  LIE M  E  + +W ++L GC+ HG 
Sbjct: 431 SIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGK 490

Query: 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
             +G   A++++EL+P++   Y  +S+ FAT+  W++ + +R IM++  + K+PG S
Sbjct: 491 FLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYS 547



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 82/151 (54%), Gaps = 10/151 (6%)

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRN 430
           A +I + A +  +E   QVF +    G+D+      +++  Y + G  ++AL+L++ M +
Sbjct: 43  AKLIQSYARLGHIESARQVFDKSPQCGVDA----WNAMIIAYSRRGAMFEALSLYHRMAS 98

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQK-WFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
            GV+P   T+T +L AC     ++ G++ W  A+   Y  D  +   + +++L+A+ G +
Sbjct: 99  EGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVG--AAVLNLYAKCGKM 156

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
           +EA+ + ++M    D+  W++++ G   +G 
Sbjct: 157 DEAMRVFDKMG-RRDLVCWTTMITGLAQNGQ 186


>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score =  279 bits (714), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 186/642 (28%), Positives = 304/642 (47%), Gaps = 127/642 (19%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           + T + Y + L++ C    S+   K +H   +K G  N+   + NR L +Y + G   D+
Sbjct: 33  LATSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVG-FNTHTFLGNRCLDLYSQLGTGNDS 91

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL-- 118
           L +F+++  +N  SWN  ++ F++ G  E++  +F+ MP+++  SWN +ISG+    L  
Sbjct: 92  LRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFD 151

Query: 119 ----------------AALEY------------GKQIHSHILVNGLDFDSVL-GSSLVNL 149
                           +   Y            GKQIH+ ++ NG+D  +V+ G+SL+ +
Sbjct: 152 DAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACRGKQIHASMIRNGVDLSNVVVGNSLIGM 211

Query: 150 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
           YGK G  + A  V   M+E D                           T  +S++W+   
Sbjct: 212 YGKFGVVDYAFGVFITMEELD--------------------------ITSWNSLIWSCGK 245

Query: 210 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
           SGY        AL  F  MR  G   D  T+++V++ CS+L  LE G+Q+     +VG +
Sbjct: 246 SGY-----QNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFL 300

Query: 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
            + IV+SA +D +SK                               C R+ED+  +F  +
Sbjct: 301 SNSIVSSASIDLFSK-------------------------------CNRLEDSVRVFEEI 329

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
                +  N+MI   + +G    AL LF    + +LR  +F+L+ V+SA + +  ++ G 
Sbjct: 330 YQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGS 389

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------------ 419
           Q+ + V   GL+SD I+++SLV+ Y K G                               
Sbjct: 390 QIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNG 449

Query: 420 ---DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
               AL +F E+   G  P  IT   +L AC+  GLV EG   F +M+ +Y + P IEHY
Sbjct: 450 RVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHY 509

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
           +C+VD+ +R G L EA++++E MP E    +W S+L  C  +GD     +VAER++EL+P
Sbjct: 510 ACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEP 569

Query: 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +++  Y+ L+  +   G WE    +R  M+EK V K+ GCSW
Sbjct: 570 QSSLPYLVLAQAYEMRGRWESLVRVRRAMKEKGVRKVIGCSW 611



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 148/337 (43%), Gaps = 52/337 (15%)

Query: 218 DTEALLLFHKMRRNGVLEDA--------STLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
           + + + L H +R    L+ A        S  ++++  C  L  L++ K VH    KVG  
Sbjct: 10  EEKLVYLCHSIRMQPFLKKAHGPLATSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVGFN 69

Query: 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
               + +  LD YS+ G  +D+ ++F ++   + I  N  +  +   G +E A+ +F  M
Sbjct: 70  THTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEM 129

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           P + ++SWN+MI G    G   +A   F  M K  +R   F+ ++++S    +SS   G+
Sbjct: 130 PKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSF---VSSACRGK 186

Query: 390 QVFARVTIIGLD-SDQIISTSLVDFY-------------------------------CKC 417
           Q+ A +   G+D S+ ++  SL+  Y                                K 
Sbjct: 187 QIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDITSWNSLIWSCGKS 246

Query: 418 GYDALAL--FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
           GY  LAL  F  MR+ G  P   T + +++ C +   +++G++ F        +   I  
Sbjct: 247 GYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVS 306

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
            S  +DLF++   L ++V + E+      +  W S+L
Sbjct: 307 -SASIDLFSKCNRLEDSVRVFEE------IYQWDSVL 336


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  279 bits (714), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 195/681 (28%), Positives = 311/681 (45%), Gaps = 147/681 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLK--KGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           L RLL SC T  S+ V   LH   L   +G+L  +L    +LL  Y   G+   A ++FD
Sbjct: 32  LLRLLPSCGTLPSLRV---LHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVFD 88

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLA 119
             PR + +S+  M+   ++     +++ L   M      P+  D   + ++S   KA + 
Sbjct: 89  GTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQD---DFVLSLALKACIR 145

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           + +YG     H        D+V          K G               D F +++L+ 
Sbjct: 146 SADYGYGTRLHC-------DAV----------KVGG-------------ADGFVMNSLVD 175

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            YA  G +  AR+VF+R    + V W SM+SG + N    + LLLF+KMR++ V     T
Sbjct: 176 MYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYT 235

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK--------------- 284
           +A+V++ACS+L  L  G+ +HG   K G++ +  +++ALLD Y K               
Sbjct: 236 IATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELS 295

Query: 285 ----------------RGMPSDACKLFSELK----------------------------- 299
                            G P DA +LF + K                             
Sbjct: 296 YIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRS 355

Query: 300 ----------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
                     V  T+++N ++ +Y+ C  + +A  IF ++ NK +++WNSM+ G ++N  
Sbjct: 356 IHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNM 415

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
             +AL LF  M+      D  S+   +SA   +  L +G+            S+  +ST+
Sbjct: 416 CNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTA 475

Query: 410 LVDFYCKCG--------YD-------------------------ALALFNEMRNTGVKPT 436
           L++ Y KCG        +D                         ++ LF EM   GV P 
Sbjct: 476 LLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPN 535

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            + FT+ILS C H G+V   +++FD+M   ++I P ++HY+CMVD+ ARAG L EA+  I
Sbjct: 536 DVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFI 595

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
           + MP +AD  +W + L GC  H     G +  +RM+ L PE    Y+ +S+++ ++G WE
Sbjct: 596 DNMPMQADTSVWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYVLISNLYTSNGMWE 655

Query: 557 KSSLIRDIMREKHVGKLPGCS 577
           KS  IR  M+EK + KLPG S
Sbjct: 656 KSQAIRRWMQEKGLVKLPGYS 676


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 184/609 (30%), Positives = 290/609 (47%), Gaps = 95/609 (15%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C+     H G+ +H H +  G L + L ++  LL MY++C    DA  +F  MP R+
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAG-LQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 72  CFSWNAMIEGFMKLGHKEKSL-QLFNVMPQKNDFSWN--MLISGFAK-ADLAALEYGKQI 127
             +WNAM+ G+   G    ++  L ++  Q +    N   L++     A   AL  G  +
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 128 HSHILVNGLDFDSVLGSSLVN--LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           H++ +   L  +    S L +  L G                       +AL+  YA CG
Sbjct: 251 HAYCIRACLHPNRNSKSKLTDGVLLG-----------------------TALLDMYAKCG 287

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVL 244
            +  ARRVFD     + V W+++I G++  +  T+A LLF  M   G+     +++AS L
Sbjct: 288 SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASAL 347

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+SL  L  G+Q+H    K GV  D+   ++LL  Y+K                    
Sbjct: 348 RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK-------------------- 387

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                       G I+ A  +F  M  K  +S+++++ G  QNG   EA  +F  M   +
Sbjct: 388 -----------AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACN 436

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           +  D  ++ S+I AC+++++L+ G      V I GL S+  I  +L+D Y KCG      
Sbjct: 437 VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSR 496

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +A ALF EM N G  P  +TF  +LSAC H G
Sbjct: 497 QVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 556

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV EG+ WF  M   Y + P +EHY CMVDL +R G L+EA   I+ MP  ADV +W ++
Sbjct: 557 LVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVAL 616

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  + +  LG+KV+  + EL PE    ++ LS+I++ +G +++++ +R I + +   
Sbjct: 617 LGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFK 676

Query: 572 KLPGCSWAD 580
           K PGCSW +
Sbjct: 677 KSPGCSWIE 685



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 120/523 (22%), Positives = 219/523 (41%), Gaps = 92/523 (17%)

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE-----YGKQIHSHILVNGLDFDS 140
           GH  ++  LF+ +P  +  ++N LI  ++ +   A       Y + +   +  N   F  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            L +        CG        ++   + D F  +AL+  Y  C  + DA  +F      
Sbjct: 131 ALKACSALADHHCGR-AIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 201 SSVMWNSMISGYISNN--EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
             V WN+M++GY  +       A LL  +M+ + +  +ASTL ++L   +  G L  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 259 VHGH---AC-------KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           VH +   AC       K  + D V++ +ALLD Y+K                        
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAK------------------------ 285

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RM 367
                  CG +  A+ +F  MP ++ ++W+++I G        +A  LF  M    L  +
Sbjct: 286 -------CGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 338

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALF 425
              S+AS + ACA++  L +GEQ+ A +   G+ +D     SL+  Y K G    A+ALF
Sbjct: 339 SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF 398

Query: 426 NE-------------------------------MRNTGVKPTIITFTAILSACDHCGLVK 454
           +E                               M+   V+P   T  +++ AC H   ++
Sbjct: 399 DEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQ 458

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            G+    ++  +  +  E    + ++D++A+ G ++ +  +   MP   D+  W++++ G
Sbjct: 459 HGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAG 516

Query: 515 CVAHGDKGLGRKVAERMIELD----PENACAYIQLSSIFATSG 553
              +G  GLG++     +E++    P +   +I L S  + SG
Sbjct: 517 ---YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 556



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 161/377 (42%), Gaps = 78/377 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C +   + +G+QLH    K G+ ++ L   N LL MY + G    A+ LFDEM
Sbjct: 343 IASALRACASLDHLRMGEQLHALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEM 401

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGK 125
             ++  S++A++ G+++ G  E++  +F  M   N    +  M+    A + LAAL++G+
Sbjct: 402 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
             H  +++ GL  ++ + ++L+++Y KCG  + + QV NMM   D               
Sbjct: 462 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD--------------- 506

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                            V WN+MI+GY  +    EA  LF +M   G   D  T   +LS
Sbjct: 507 ----------------IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLS 550

Query: 246 ACSSLGFLEHGK---QVHGHA-----------CKV------GVID-------------DV 272
           ACS  G +  GK    V GH            C V      G +D             DV
Sbjct: 551 ACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 610

Query: 273 IVASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI---- 325
            V  ALL     Y    +     ++  EL    T     +  +YS+ GR ++A  +    
Sbjct: 611 RVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQ 670

Query: 326 ----FRTMPNKSLISWN 338
               F+  P  S I  N
Sbjct: 671 KVQGFKKSPGCSWIEIN 687


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 183/597 (30%), Positives = 284/597 (47%), Gaps = 75/597 (12%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           KQ+H H L+          A++LL  Y    C     A  +F+++P+ N + WN +I G+
Sbjct: 89  KQIHAHMLRTSRFCDPY-TASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGY 147

Query: 83  MKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
                  +S  +F  M        N F++  L    A + L  L  G  +H  ++   L 
Sbjct: 148 ASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFK--AASRLKVLHLGSVLHGMVIKASLS 205

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            D  + +SL+N YG  G              PD                   A RVF   
Sbjct: 206 SDLFILNSLINFYGSSG-------------APD------------------LAHRVFTNM 234

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                V WN+MI+ +       +ALLLF +M    V  +  T+ SVLSAC+    LE G+
Sbjct: 235 PGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGR 294

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
            +  +    G  + +I+ +A+LD Y K G  +DA  LF+++   D +   TM+  ++  G
Sbjct: 295 WICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLG 354

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVI 376
             ++A  IF  MP+K   +WN++I    QNG P  AL LF  M    D + D+ +L   +
Sbjct: 355 NYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICAL 414

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------------- 417
            A A + +++ G  +   +    ++ +  ++TSL+D Y KC                   
Sbjct: 415 CASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVY 474

Query: 418 --------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                         G  AL LF+ M    +KP  +TFT IL AC+H GLV EG++ F+ M
Sbjct: 475 VWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQM 534

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
           +  Y I P+I+HY C+VD+F RAG L +A + IE+MP      +W ++L  C  HG+  L
Sbjct: 535 EPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVEL 594

Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
                + ++EL+P N  A++ LS+I+A +G+WEK S +R +MR+  V K P CS  D
Sbjct: 595 AELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSID 651



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 227/489 (46%), Gaps = 51/489 (10%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H+G  LH   +K   L+S L I N L+  Y   G P  A  +F  MP ++  SWNAMI 
Sbjct: 189 LHLGSVLHGMVIKAS-LSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMIN 247

Query: 81  GFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
            F   G  +K+L LF  M  K    N  +   ++S  AK     LE+G+ I S+I  NG 
Sbjct: 248 AFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKK--IDLEFGRWICSYIENNGF 305

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
               +L ++++++Y KCG  N A  + N M E D    + ++ G+A  G  ++A  +FD 
Sbjct: 306 TEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDA 365

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEH 255
                +  WN++IS Y  N +   AL LFH+M+       D  TL   L A + LG ++ 
Sbjct: 366 MPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDF 425

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G  +H +  K  +  +  +A++LLD Y+K                               
Sbjct: 426 GHWIHVYIKKHDINLNCHLATSLLDMYAK------------------------------- 454

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
           CG +  A  +F  +  K +  W++MI  L+  G    ALDLF +M +  ++ +  +  ++
Sbjct: 455 CGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNI 514

Query: 376 ISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG-YDALALFNEMRNTGV 433
           + AC +   +  GEQ+F ++  + G+         +VD + + G  +  A F E     +
Sbjct: 515 LCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIE--KMPI 572

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV---DLFARAGCLN 490
            PT   + A+L AC   G V+  +     + +Q  ++ E  ++   V   +++A+AG   
Sbjct: 573 PPTAAVWGALLGACSRHGNVELAE-----LAYQNLLELEPCNHGAFVLLSNIYAKAGDWE 627

Query: 491 EAVNLIEQM 499
           +  NL + M
Sbjct: 628 KVSNLRKLM 636



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 167/381 (43%), Gaps = 49/381 (12%)

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC----LSALISGYA--NCGK 186
           V G   + V  ++++    +C +     Q+   M     FC     S L++ YA  +C  
Sbjct: 62  VKGEKGNEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSC 121

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF-HKMRRNGVLEDASTLASVLS 245
           +  A+ VF++    +   WN++I GY S+++ T++ L+F H +       +  T   +  
Sbjct: 122 LIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFK 181

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A S L  L  G  +HG   K  +  D+ + ++L++ Y   G P  A ++F+ +   D + 
Sbjct: 182 AASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVS 241

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N MI  ++  G           +P+K+L+                    LF  M   D+
Sbjct: 242 WNAMINAFALGG-----------LPDKALL--------------------LFQEMEMKDV 270

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALA 423
           + +  ++ SV+SACA    LE G  + + +   G     I++ +++D Y KCG   DA  
Sbjct: 271 KPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKD 330

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
           LFN+M     +  I+++T +L      G   E    FDAM  ++        ++ ++  +
Sbjct: 331 LFNKMS----EKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKW-----TAAWNALISAY 381

Query: 484 ARAGCLNEAVNLIEQMPFEAD 504
            + G    A++L  +M    D
Sbjct: 382 EQNGKPRVALSLFHEMQLSKD 402


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 175/609 (28%), Positives = 290/609 (47%), Gaps = 108/609 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL +C     +    Q+H   +  G+  +       ++  Y R G  T A  LFD++
Sbjct: 10  LKHLLLACKDEAPV---TQIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKL 66

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAAL 121
           P+R   +WNAMI  + +  H  + L L++ M      P  + F+    ++  A + L  L
Sbjct: 67  PQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFT----VAIKASSSLKDL 122

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           E G++I    +  G   D  +GSS++NLY K                             
Sbjct: 123 EAGERIWRRAVDFGYGCDVFVGSSVLNLYVK----------------------------- 153

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
             CGK+++A+ VFD+      V W +MI+G + N    EA+ +F +MR+ G+  D   + 
Sbjct: 154 --CGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLML 211

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            ++ AC++LG L+ G  VHGHA +                               E+ + 
Sbjct: 212 GLVQACANLGELKLGLSVHGHAVR------------------------------REMLMD 241

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D IL  +++ +Y+  G +E A  +F  MP K+ +SW ++I G +QNG    ALDL   M 
Sbjct: 242 DVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQ 301

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
            L+ + D   L S + AC+ +  L+LG+ +   + +  L  + ++ T+L+D Y KCG   
Sbjct: 302 SLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYI-VRRLGFELVLGTALIDMYAKCGSLS 360

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          + L+LF +M+   + P   TF ++LSA  
Sbjct: 361 CAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALS 420

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H G V  GQ WF+AM  +  I P  +HY+CMVDLF+RAG + EA  LIE M  E  + +W
Sbjct: 421 HSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIW 480

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L GC  + +   G   A+++++L+P++   Y  +S+ F+ +  W++ S++R IM+E 
Sbjct: 481 VALLSGCHNYRNLLFGEVAAKKILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMKET 540

Query: 569 HVGKLPGCS 577
            + K+PG S
Sbjct: 541 GMKKVPGYS 549


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 178/584 (30%), Positives = 289/584 (49%), Gaps = 73/584 (12%)

Query: 37  LNSTLP--IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           L ++LP  +A + +++Y   G+   A  LFD++P+ +  +W  +I    K G   +++Q 
Sbjct: 5   LPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQY 64

Query: 95  FNVMPQKNDFSWN-MLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
           +N    KN    + +L+   AKA   L  +   K++H   +  G   D +LG++L+++YG
Sbjct: 65  YNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYG 124

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
           KC                              C +   AR VF+       + W SM S 
Sbjct: 125 KC-----------------------------RCSE--GARLVFEGMPFRDVISWTSMASC 153

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           Y++     EAL  F KM  NG   ++ T++S+L AC+ L  L+ G++VHG   + G+  +
Sbjct: 154 YVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGN 213

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
           V V+SAL++ Y+       A  +F  +   DT+  N +IT Y      E    +F  M +
Sbjct: 214 VFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMS 273

Query: 332 KSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
           + +     SWN++I G  QNG   +AL++   M     + ++ ++ SV+ AC N+ SL  
Sbjct: 274 EGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRG 333

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------------- 418
           G+Q+   +       D   +T+LV  Y KCG                             
Sbjct: 334 GKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSM 393

Query: 419 ----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                +AL LF EM ++GV+P  +TFT +LS C H  LV EG   FD+M   + ++P+ +
Sbjct: 394 HGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDAD 453

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           H+SCMVD+ +RAG L EA   I++MP E   G W ++L GC  + +  LGR  A R+ E+
Sbjct: 454 HHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEI 513

Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           + +N   Y+ LS+I  ++  W ++S  R +MR++ V K PGCSW
Sbjct: 514 ESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSW 557



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 138/334 (41%), Gaps = 70/334 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C     +  G+++H   ++ G +   + +++ L+ MY  C +   A L+FD M
Sbjct: 182 VSSILPACTDLKDLKSGREVHGFVVRNG-MGGNVFVSSALVNMYASCLSIRQAQLVFDSM 240

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLI------------- 110
            RR+  SWN +I  +      EK L +F  M  +    N  SWN +I             
Sbjct: 241 SRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKAL 300

Query: 111 --------SGF------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
                   SGF            A  +L +L  GKQIH +I  +    D    ++LV +Y
Sbjct: 301 EVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMY 360

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
            KCGD   + +V +MM + D                               +V WN+MI 
Sbjct: 361 AKCGDLELSRRVFSMMTKRD-------------------------------TVSWNTMII 389

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
               +    EALLLF +M  +GV  ++ T   VLS CS    ++ G  +     +   ++
Sbjct: 390 ATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVE 449

Query: 271 -DVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
            D    S ++D  S+ G   +A +   ++ +  T
Sbjct: 450 PDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPT 483


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 184/611 (30%), Positives = 296/611 (48%), Gaps = 105/611 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L R++ SC    S+ VG QLH   +K G  +S + I + L+ MY +CG  + A  LFDEM
Sbjct: 82  LNRMVSSCAKSGSVFVGIQLHSTIIKVG-FDSNVYICSALVDMYGKCGAVSSAQRLFDEM 140

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
           P RN  +WN++I G++ +G  E +++LF  M +       FS + ++ G  + +   L  
Sbjct: 141 PHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAVLVGCWRMEDTKL-- 198

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+H   +  G  ++ V+G+ L++LY K  + +++                        
Sbjct: 199 GIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDAS------------------------ 234

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                  R +FD   + + + W SM++GY    +   A++L   M+R G+  +  T   +
Sbjct: 235 -------RLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCL 287

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LS+ SS   L+H KQVH                               C++  E    ++
Sbjct: 288 LSSFSSSNDLDHCKQVH-------------------------------CRIIREGLESNS 316

Query: 304 ILLNTMITVYSSCGR--IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
            L  T++TVYS C    +ED   +   +     ISWN++I GLS  G+   AL  F  M 
Sbjct: 317 YLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMR 376

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
           +  + MD F+  SV+ A   IS+L+ G+Q+ A V   G  S+  +   LV  Y +CG   
Sbjct: 377 QAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSIN 436

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +A+ LF +MR +GVKP   TF  +LSAC 
Sbjct: 437 DAKRVFSLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACR 496

Query: 449 HCGLVKEGQKWFDAMKWQYHID-PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
           H GL+ +G ++FD M+  Y ++ P  EHYS MVDLF+RAG L+EA + I  MP E    +
Sbjct: 497 HVGLLDKGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSV 556

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           + ++L  C  HG+  +  + A++++++ P +   Y+ LS++ AT G W+  + IR +M +
Sbjct: 557 YKALLSACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVASIRKVMCD 616

Query: 568 KHVGKLPGCSW 578
           + V K PG SW
Sbjct: 617 RGVRKEPGYSW 627


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  279 bits (713), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 173/563 (30%), Positives = 278/563 (49%), Gaps = 107/563 (19%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGF 113
           A  +FD+MP RN  +W  MI  F +LG    ++ LF        +P +  F+++ ++S  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR--FTYSSVLS-- 59

Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC---GDFNSANQVLNMMKEPD 170
           A  +L  L  GKQ+HS ++  GL  D  +G SLV++Y KC   G  + + +V   M E +
Sbjct: 60  ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 119

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
               +A+I+ YA  G+                               D EA+ LF KM  
Sbjct: 120 VMSWTAIITAYAQSGEC------------------------------DKEAIELFCKMIS 149

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
             +  +  + +SVL AC +L     G+QV+ +A K+G+     V ++L+  Y++ G    
Sbjct: 150 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG---- 205

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
                                      R+EDA+  F  +  K+L+S+N+++ G ++N   
Sbjct: 206 ---------------------------RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKS 238

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
            EA  LF  +    + +  F+ AS++S  A+I ++  GEQ+  R+   G  S+Q I  +L
Sbjct: 239 EEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL 298

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           +  Y +CG                                   AL +F++M  TG KP  
Sbjct: 299 ISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE 358

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           IT+ A+LSAC H G++ EGQK F++M  ++ I P +EHY+CMVDL  R+G L EA+  I 
Sbjct: 359 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN 418

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
            MP  AD  +W ++L  C  HG+  LGR  AE ++E +P++  AYI LS++ A++G+W+ 
Sbjct: 419 SMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKD 478

Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
              IR  M+E+++ K  GCSW +
Sbjct: 479 VVKIRKSMKERNLIKEAGCSWIE 501



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 153/323 (47%), Gaps = 40/323 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L++C      + G+Q++ + +K GI  S   + N L+ MY R G   DA   FD +
Sbjct: 159 FSSVLKACGNLSDPYTGEQVYSYAVKLGIA-SVNCVGNSLISMYARSGRMEDARKAFDIL 217

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             +N  S+NA+++G+ K    E++  LFN +       + F++  L+SG   A + A+  
Sbjct: 218 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG--AASIGAMGK 275

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH  +L  G   +  + ++L+++Y +CG+  +A QV N M++ +    +++I+G+A 
Sbjct: 276 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 335

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G                                 T AL +FHKM   G   +  T  +V
Sbjct: 336 HGFA-------------------------------TRALEMFHKMLETGTKPNEITYVAV 364

Query: 244 LSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY- 301
           LSACS +G +  G K  +    + G++  +   + ++D   + G+  +A +  + + +  
Sbjct: 365 LSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMA 424

Query: 302 DTILLNTMITVYSSCGRIEDAKH 324
           D ++  T++      G  E  +H
Sbjct: 425 DALVWRTLLGACRVHGNTELGRH 447


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  279 bits (713), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 173/614 (28%), Positives = 314/614 (51%), Gaps = 89/614 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC------GNPTDALLLF 64
           LL++C +   +   KQ+    L+ G   S        L  +M C      GN   A  +F
Sbjct: 38  LLKNCKSMQHL---KQIQTQILRTGFHQS-----GDTLNKFMVCCTDPSIGNLHYAERIF 89

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAA 120
           + +     F +N +I+ F K G   K++ LF  + ++    ++F++  +    A   L  
Sbjct: 90  NYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFK--AIGCLGE 147

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           +  G++++  ++ +GL+FD+ + +SL+++Y                              
Sbjct: 148 VREGEKVYGFVVKSGLEFDTYVCNSLMDMY------------------------------ 177

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DAST 239
            A  G++ + R+VF+       V WN +ISGY+      +A+ +F +M++   L  + +T
Sbjct: 178 -AEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEAT 236

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           + S LSAC +L  LE GK++H +  +  +   + + +AL+D Y K G  S A ++F+++ 
Sbjct: 237 VVSTLSACIALKMLELGKEIHRYV-REQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMP 295

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           +   I   +M++ Y +CG++++A+ +F   P + ++ W +MI G  Q     +A+ LF  
Sbjct: 296 IKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFRE 355

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M    +  D+F+L ++++ CA + +LE G+ +   +    +  D ++ T+L++ Y KCG+
Sbjct: 356 MQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGF 415

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                             AL LF EM  TGVKP  ITF  +LSA
Sbjct: 416 IEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSA 475

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEA 503
           C H GLV+EG+K F +M   Y I+P++EHY C++DL  RAG L+EA  LIE+ P    E 
Sbjct: 476 CSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEV 535

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
            V ++ ++L  C  HG+  +G +VA+R++ ++  ++  +  L++I+A++  WE  + +R 
Sbjct: 536 IVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRR 595

Query: 564 IMREKHVGKLPGCS 577
            M++  V K+PGCS
Sbjct: 596 KMKDLGVKKVPGCS 609



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 10/203 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL  C    ++  GK +H +  +  I+   + +   L++MY +CG    +L +F+ +
Sbjct: 368 LVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAV-VGTALIEMYAKCGFIEKSLEIFNGL 426

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             ++  SW ++I G    G   K+L+LF  M Q     +D ++  ++S  +   L   E 
Sbjct: 427 KEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVE-EG 485

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL----NMMKEPDDFCLSALIS 179
            K   S   V  ++        L++L G+ G  + A +++    N+  E       AL+S
Sbjct: 486 RKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLS 545

Query: 180 GYANCGKMNDARRVFDRTTDTSS 202
                G +    RV  R     S
Sbjct: 546 ACRTHGNVEMGERVAKRLVGIES 568


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 190/682 (27%), Positives = 310/682 (45%), Gaps = 149/682 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFL--KKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           L RLL SC T  S+ V   LH   L   +G+L  +L    +LL  Y   G+   A ++FD
Sbjct: 65  LLRLLPSCGTLLSLRV---LHARLLTHPQGLLLGSLRARTKLLSCYAALGDLASARMVFD 121

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------NDFSWNMLISGFAKADL 118
             PR + +S+ AM+   ++      ++ L + M ++       +DF  ++ +    ++  
Sbjct: 122 GTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRS-- 179

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           A   YG+ +H   +  G                                  D F +++L+
Sbjct: 180 AEYSYGRSLHCDAIKVG--------------------------------GADGFVMNSLV 207

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
             YA    +  AR+VF+R  D + V W SMISG + N   ++ LLLF+KMR++ V     
Sbjct: 208 DMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEY 267

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK-------------- 284
           T+A+V++ACS+L  L  G+ +HG   K G++ +  +++ALLD Y K              
Sbjct: 268 TIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDEL 327

Query: 285 -----------------RGMPSDACKLFSELK---------------------------- 299
                             G P DA +LF + +                            
Sbjct: 328 SYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGK 387

Query: 300 -----------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                      V   ++ N ++ +Y+ C  + +A  IF  + NK +++WNSMI G ++N 
Sbjct: 388 SIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENN 447

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              +AL LF  M+      D  S+ + +SA   +  L +G+ +          S+  + T
Sbjct: 448 MGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDT 507

Query: 409 SLVDFYCKCG--------YD-------------------------ALALFNEMRNTGVKP 435
           +L++ Y KCG        +D                         ++ LF EM   GV P
Sbjct: 508 ALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYP 567

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
             I FT+ILS C H G+V  G+++FD+M   ++I P ++HY+CMVD+ ARAG L +A+  
Sbjct: 568 NDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEF 627

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555
           I+ MP +AD  +W + L GC  H       +  +RM+ L PE    Y+ +S+++ ++G W
Sbjct: 628 IDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNGMW 687

Query: 556 EKSSLIRDIMREKHVGKLPGCS 577
           +KS  IR  M+EK + KLPGCS
Sbjct: 688 DKSLAIRRWMQEKGLVKLPGCS 709


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 181/607 (29%), Positives = 292/607 (48%), Gaps = 104/607 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++  G+++H+H ++ G   S + + N L+ MY++CG+   A L+FD+MP R
Sbjct: 213 VLRTCGGMPNLVRGREIHVHVIRYG-FESDVDVVNALITMYVKCGDVNTARLVFDKMPNR 271

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKNDFSWNMLISGFAKAD--LAALEYGK 125
           +  SWNAMI G+ + G   + L+LF +M   P   D    M ++    A   L     G+
Sbjct: 272 DRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDL---MTMTSVITACELLGDDRLGR 328

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH ++L      D  + +SL+ +Y   G    A  V +  +  D    +A+ISGY NC 
Sbjct: 329 QIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENC- 387

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                            +M               +AL  +  M   G++ D  T+A VLS
Sbjct: 388 -----------------LM-------------PQKALETYKMMEAEGIMPDEITIAIVLS 417

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS L  L+ G  +H  A + G++   IVA++L+D Y+K                     
Sbjct: 418 ACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAK--------------------- 456

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     C  I+ A  IF +   K+++SW S+I+GL  N    EAL  F  M +  L
Sbjct: 457 ----------CKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR-RL 505

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
           + +  +L  V+SACA I +L  G+++ A     G+  D  +  +++D Y +CG       
Sbjct: 506 KPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWK 565

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                      A  LF  M  + V P  +TF +IL AC   G+V
Sbjct: 566 QFFSVDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMV 625

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            EG ++F++MK++Y I P ++HY+C+VDL  R+G L EA   I++MP + D  +W ++L 
Sbjct: 626 AEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLN 685

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H    LG   AE + + D  +   YI LS+++A +G+W+K + +R +MR+  +   
Sbjct: 686 SCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVD 745

Query: 574 PGCSWAD 580
           PGCSW +
Sbjct: 746 PGCSWVE 752


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 180/597 (30%), Positives = 286/597 (47%), Gaps = 109/597 (18%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ+H   L  G+  S   I  +L+      G+ T A  +FD++PR   F WNA+I G+ +
Sbjct: 38  KQIHARLLVLGLQFSGFLI-TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSR 96

Query: 85  LGHKEKSL------QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
             H + +L      QL  V P  + F++  L+   A + L+ L+ G+ +H+ +   G D 
Sbjct: 97  NNHFQDALLMYSNMQLARVSP--DSFTFPHLLK--ACSGLSHLQMGRFVHAQVFRLGFDA 152

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD--R 196
           D                                F  + LI+ YA C ++  AR VF+   
Sbjct: 153 DV-------------------------------FVQNGLIALYAKCRRLGSARTVFEGLP 181

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             + + V W +++S Y  N E  EAL +F  MR+  V  D   L SVL+A + L  L+ G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           + +H    K+G+                            E++    I LNTM   Y+ C
Sbjct: 242 RSIHASVVKMGL----------------------------EIEPDLLISLNTM---YAKC 270

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G++  AK +F  M + +LI WN+MI G ++NG   EA+D+F  M   D+R D  S+ S I
Sbjct: 271 GQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAI 330

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
           SACA + SLE    ++  V       D  IS++L+D + KCG                  
Sbjct: 331 SACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVV 390

Query: 419 ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                           +A++L+  M   GV P  +TF  +L AC+H G+V+EG  WF  +
Sbjct: 391 VWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGW-WFFNL 449

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
              + I+P+ +HY+C++DL  RAG L++A  +I+ MP +  V +W ++L  C  H    L
Sbjct: 450 MADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVEL 509

Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           G   A+++  +DP N   Y+QLS+++A +  W++ + +R  M+EK + K  GCSW +
Sbjct: 510 GEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 38/261 (14%)

Query: 1   MDTRIDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNP 57
           MD + D++A   +L +      +  G+ +H   +K G+ +   L I+  L  MY +CG  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS--LNTMYAKCGQV 273

Query: 58  TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AK 115
             A +LFD+M   N   WNAMI G+ K G+  +++ +F+ M  K+     + I+    A 
Sbjct: 274 ATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           A + +LE  + ++ ++  +    D  + S+L++++ KCG    A  V +   + D    S
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           A+I GY   G+                                 EA+ L+  M R GV  
Sbjct: 394 AMIVGYGLHGRAR-------------------------------EAISLYRAMERGGVHP 422

Query: 236 DASTLASVLSACSSLGFLEHG 256
           +  T   +L AC+  G +  G
Sbjct: 423 NDVTFLGLLMACNHSGMVREG 443



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 140/378 (37%), Gaps = 79/378 (20%)

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G+  D   AS +     K  +     +L      +   L+  +I   SS G I  A+ +F
Sbjct: 17  GIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVF 76

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             +P   +  WN++I G S+N    +AL ++ NM    +  D F+   ++ AC+ +S L+
Sbjct: 77  DDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQ 136

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------------------- 417
           +G  V A+V  +G D+D  +   L+  Y KC                             
Sbjct: 137 MGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196

Query: 418 ------GYDALALFNEMRNTGVKPTIITFTAILSACD----------------------- 448
                   +AL +F+ MR   VKP  +   ++L+A                         
Sbjct: 197 YAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256

Query: 449 ------------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
                        CG V   +  FD MK      P +  ++ M+  +A+ G   EA+++ 
Sbjct: 257 PDLLISLNTMYAKCGQVATAKILFDKMK-----SPNLILWNAMISGYAKNGYAREAIDMF 311

Query: 497 EQM---PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD-PENACAYIQLSSIFATS 552
            +M       D    +S +  C   G     R + E +   D  ++      L  +FA  
Sbjct: 312 HEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC 371

Query: 553 GEWEKSSLIRDIMREKHV 570
           G  E + L+ D   ++ V
Sbjct: 372 GSVEGARLVFDRTLDRDV 389


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 185/621 (29%), Positives = 302/621 (48%), Gaps = 125/621 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPR 69
           ++++C+    + VG+ +    +K G   S + +   L+ M+++  N   +A  +FD+M  
Sbjct: 172 VIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF------------AKAD 117
            N  +W  MI   M++G   ++++ F           +M++SGF            A A+
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFF----------LDMVLSGFESDKFTLSSVFSACAE 281

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC---GDFNSANQVLNMMKEPDDFCL 174
           L  L  G+Q+HS  + +GL  D  +  SLV++Y KC   G  +   +V + M++      
Sbjct: 282 LENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSW 339

Query: 175 SALISGY-ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           +ALI+GY  NC                               N  TEA+ LF +M   G 
Sbjct: 340 TALITGYMQNC-------------------------------NLATEAINLFSEMITQGH 368

Query: 234 LE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +E +  T +S   AC ++     GKQV GHA K G+  +  V+++++  + K        
Sbjct: 369 VEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVK-------- 420

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
                                  C R+EDA+  F ++  K+L+S+N+ + G  +N     
Sbjct: 421 -----------------------CDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEH 457

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           A +L   + + +L +  F+ AS++S  AN+ SL  GEQ+ ++V  +GL  +Q +  +L+ 
Sbjct: 458 AFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALIS 517

Query: 413 FYCKCG---------------------------------YDALALFNEMRNTGVKPTIIT 439
            Y KCG                                    L  FN+M   GVKP  +T
Sbjct: 518 MYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVT 577

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           + AILSAC H GLV EG + F++M   + I P++EHY+CMVDL  RAG L +A   I  M
Sbjct: 578 YVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTM 637

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           PF+ADV +W + L  C  H +  LG+  A +++E DP    AYIQLS+I+A++G+WE+S+
Sbjct: 638 PFQADVLVWRTFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEEST 697

Query: 560 LIRDIMREKHVGKLPGCSWAD 580
            +R  M+E+++ K  GCSW +
Sbjct: 698 EMRRKMKERNLVKEGGCSWIE 718



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 133/572 (23%), Positives = 251/572 (43%), Gaps = 121/572 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LL+SC       +GK +H   ++  I   ++ + N L+ +Y + G+ T A  +F+ M
Sbjct: 65  FSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSV-LYNSLISLYSKSGDLTKAKDVFETM 123

Query: 68  PR---RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADL 118
            R   R+  SW+AM+  F   G +  +++LF       ++P  ND+ +  +I   + +D 
Sbjct: 124 GRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVP--NDYCYTAVIRACSNSDF 181

Query: 119 AALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
             +  G+ I   ++  G  + D  +G SL++++               +K  + F     
Sbjct: 182 VGV--GRVILGFLMKTGHFESDVCVGCSLIDMF---------------VKGENSF----- 219

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                      +A +VFD+ ++ + V W  MI+  +      EA+  F  M  +G   D 
Sbjct: 220 ----------ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK 269

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            TL+SV SAC+ L  L  G+Q+H  A + G+ DD  V  +L+D Y+K       C     
Sbjct: 270 FTLSSVFSACAELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAK-------C----- 315

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS-PIEALDL 356
                           S+ G ++D + +F  M + S++SW ++I G  QN +   EA++L
Sbjct: 316 ----------------SADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNLATEAINL 359

Query: 357 FCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           F  M  +  +  + F+ +S   AC N+S   +G+QV       GL S+  +S S++  + 
Sbjct: 360 FSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFV 419

Query: 416 KC-------------------GYD--------------ALALFNEMRNTGVKPTIITFTA 442
           KC                    Y+              A  L +E+    +  +  TF +
Sbjct: 420 KCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFAS 479

Query: 443 ILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           +LS   + G +++G++     +K     +  +   + ++ ++++ G ++ A  +   M  
Sbjct: 480 LLSGVANVGSLRKGEQIHSQVLKLGLSCNQPV--CNALISMYSKCGSIDTASRVFSLMD- 536

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
             +V  W+S++ G   HG        AER++E
Sbjct: 537 NRNVISWTSMITGFAKHG-------FAERVLE 561



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 161/349 (46%), Gaps = 47/349 (13%)

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
           ++ + F S+L S +   + + G    A +++    EPD    ++LIS Y+  G +  A+ 
Sbjct: 60  MDSVTFSSLLKSCIRARHFRLGKLVHA-RLIEFEIEPDSVLYNSLISLYSKSGDLTKAKD 118

Query: 193 VFD---RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           VF+   R      V W++M++ + +N  + +A+ LF +    G++ +     +V+ ACS+
Sbjct: 119 VFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSN 178

Query: 250 LGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
             F+  G+ + G   K G  + DV V  +L+D + K                        
Sbjct: 179 SDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVK------------------------ 214

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                      E+A  +F  M   ++++W  MI    Q G P EA+  F +M       D
Sbjct: 215 ------GENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESD 268

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA-----LA 423
           KF+L+SV SACA + +L LG Q+ +     GL  D  +  SLVD Y KC  D        
Sbjct: 269 KFTLSSVFSACAELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRK 326

Query: 424 LFNEMRNTGVKPTIITFTAILSA-CDHCGLVKEGQKWFDAMKWQYHIDP 471
           +F+ M++     +++++TA+++    +C L  E    F  M  Q H++P
Sbjct: 327 VFDRMQDH----SVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEP 371



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL       S+  G+Q+H   LK G L+   P+ N L+ MY +CG+   A  +F  M
Sbjct: 477 FASLLSGVANVGSLRKGEQIHSQVLKLG-LSCNQPVCNALISMYSKCGSIDTASRVFSLM 535

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK 101
             RN  SW +MI GF K G  E+ L+ FN M ++
Sbjct: 536 DNRNVISWTSMITGFAKHGFAERVLETFNQMTKE 569



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 44/252 (17%)

Query: 351 IEALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           + ALDL   M +  +R MD  + +S++ +C       LG+ V AR+    ++ D ++  S
Sbjct: 46  VSALDL---MARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNS 102

Query: 410 LVDFYCKCG------------------------------------YDALALFNEMRNTGV 433
           L+  Y K G                                    +DA+ LF E    G+
Sbjct: 103 LISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGL 162

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA-GCLNEA 492
            P    +TA++ AC +   V  G+     +    H + ++     ++D+F +       A
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENA 222

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
             + ++M  E +V  W+ ++  C+  G      +    M+    E+      LSS+F+  
Sbjct: 223 YKVFDKMS-ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFES--DKFTLSSVFSAC 279

Query: 553 GEWEKSSLIRDI 564
            E E  SL R +
Sbjct: 280 AELENLSLGRQL 291


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 173/563 (30%), Positives = 278/563 (49%), Gaps = 107/563 (19%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGF 113
           A  +FD+MP RN  +W  MI  F +LG    ++ LF        +P +  F+++ ++S  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR--FTYSSVLS-- 64

Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC---GDFNSANQVLNMMKEPD 170
           A  +L  L  GKQ+HS ++  GL  D  +G SLV++Y KC   G  + + +V   M E +
Sbjct: 65  ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 124

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
               +A+I+ YA  G+                               D EA+ LF KM  
Sbjct: 125 VMSWTAIITAYAQSGEC------------------------------DKEAIELFCKMIS 154

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
             +  +  + +SVL AC +L     G+QV+ +A K+G+     V ++L+  Y++ G    
Sbjct: 155 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG---- 210

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
                                      R+EDA+  F  +  K+L+S+N+++ G ++N   
Sbjct: 211 ---------------------------RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKS 243

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
            EA  LF  +    + +  F+ AS++S  A+I ++  GEQ+  R+   G  S+Q I  +L
Sbjct: 244 EEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL 303

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           +  Y +CG                                   AL +F++M  TG KP  
Sbjct: 304 ISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE 363

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           IT+ A+LSAC H G++ EGQK F++M  ++ I P +EHY+CMVDL  R+G L EA+  I 
Sbjct: 364 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN 423

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
            MP  AD  +W ++L  C  HG+  LGR  AE ++E +P++  AYI LS++ A++G+W+ 
Sbjct: 424 SMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKD 483

Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
              IR  M+E+++ K  GCSW +
Sbjct: 484 VVKIRKSMKERNLIKEAGCSWIE 506



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 153/323 (47%), Gaps = 40/323 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L++C      + G+Q++ + +K GI  S   + N L+ MY R G   DA   FD +
Sbjct: 164 FSSVLKACGNLSDPYTGEQVYSYAVKLGIA-SVNCVGNSLISMYARSGRMEDARKAFDIL 222

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             +N  S+NA+++G+ K    E++  LFN +       + F++  L+SG   A + A+  
Sbjct: 223 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG--AASIGAMGK 280

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH  +L  G   +  + ++L+++Y +CG+  +A QV N M++ +    +++I+G+A 
Sbjct: 281 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 340

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G                                 T AL +FHKM   G   +  T  +V
Sbjct: 341 HGFA-------------------------------TRALEMFHKMLETGTKPNEITYVAV 369

Query: 244 LSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY- 301
           LSACS +G +  G++      K  G++  +   + ++D   + G+  +A +  + + +  
Sbjct: 370 LSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMA 429

Query: 302 DTILLNTMITVYSSCGRIEDAKH 324
           D ++  T++      G  E  +H
Sbjct: 430 DALVWRTLLGACRVHGNTELGRH 452


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 188/665 (28%), Positives = 310/665 (46%), Gaps = 143/665 (21%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G+Q+H   +K G+++  + +   L+ MYM+  N  D   +FDEM  RN  SW +++ G+
Sbjct: 111 LGRQVHCQCVKFGLVDH-VSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGY 169

Query: 83  MKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
              G      +LF       V+P  N ++ + +I+      +  +  G Q+H+ ++ +G 
Sbjct: 170 SWNGLYGYVWELFCQMQYEGVLP--NRYTVSTVIAALVNEGVVGI--GLQVHAMVVKHG- 224

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
                              F  A  V N           +LIS Y+  G + DAR VFD+
Sbjct: 225 -------------------FEEAIPVFN-----------SLISLYSRLGMLRDARDVFDK 254

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                 V WNSMI+GY+ N +D E   +F+KM+  GV     T ASV+ +C+SL  L   
Sbjct: 255 MEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALV 314

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSK-------------------------------- 284
           K +   A K G   D IV +AL+   SK                                
Sbjct: 315 KLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQ 374

Query: 285 RGMPSDACKLFSELK---------VYDTILL--------------------------NTM 309
            G    A  LFS+++          Y  IL                             +
Sbjct: 375 NGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTAL 434

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           +  Y   G   DA  +F  +  K L++W++M+ G +Q G   EA  LF  + K  ++ ++
Sbjct: 435 LDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNE 494

Query: 370 FSLASVISACAN-ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK------------ 416
           F+ +SVI+ACA+  ++ E G+Q  A    + L++   +S++LV  Y K            
Sbjct: 495 FTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFK 554

Query: 417 --------------CGYD-------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                          GY        AL +F+EM+   +    +TF  +++AC H GLV++
Sbjct: 555 RQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEK 614

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           GQK+F++M   +HI+P ++HYSCM+DL++RAG L +A+ +I +MPF     +W ++L   
Sbjct: 615 GQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAA 674

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             H +  LG   AE++I L PE++ AY+ LS+++A +G W++ + +R +M ++ V K PG
Sbjct: 675 RVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPG 734

Query: 576 CSWAD 580
            SW +
Sbjct: 735 YSWIE 739



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 160/368 (43%), Gaps = 73/368 (19%)

Query: 190 ARRVFDRTTDTSSVM--WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           A  +FD+     + +   N ++  Y  + +  EAL LF  +  + +  D STL+ V + C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           +     + G+QVH    K G++D V V ++L+D Y K                       
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMK----------------------- 140

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                      + D + +F  M  ++++SW S++ G S NG      +LFC M    +  
Sbjct: 141 --------TENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLP 192

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------- 419
           +++++++VI+A  N   + +G QV A V   G +    +  SL+  Y + G         
Sbjct: 193 NRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVF 252

Query: 420 -------------------------DALALFNEMRNTGVKPTIITFTAILSAC---DHCG 451
                                    +   +FN+M+  GVKPT +TF +++ +C       
Sbjct: 253 DKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELA 312

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LVK  Q    A+K  +  D +I   + MV L ++   +++A++L   M    +V  W+++
Sbjct: 313 LVKLMQ--CKALKSGFTTD-QIVITALMVAL-SKCKEMDDALSLFSLMEEGKNVVSWTAM 368

Query: 512 LRGCVAHG 519
           + GC+ +G
Sbjct: 369 ISGCLQNG 376


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  278 bits (712), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 175/597 (29%), Positives = 288/597 (48%), Gaps = 101/597 (16%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + +GKQ+H   ++ G L+  + + N L+ MY++ G+ + A  +F +M   +  SWN MI 
Sbjct: 922  LELGKQIHGIVVRSG-LDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMIS 980

Query: 81   GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG----KQIHSHILVNGL 136
            G    G +E S+ +F  + +         ++   +A  ++L  G     QIH+  +  G+
Sbjct: 981  GCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRA-CSSLGGGCHLATQIHACAMKAGV 1039

Query: 137  DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
              DS + ++L+++Y                               +  GKM +A  +F  
Sbjct: 1040 VLDSFVSTTLIDVY-------------------------------SKSGKMEEAEFLFVN 1068

Query: 197  TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                    WN+M+ GYI + +  +AL L+  M+ +G   +  TLA+   A   L  L+ G
Sbjct: 1069 QDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQG 1128

Query: 257  KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
            KQ+     K G   D+ V S +LD Y K                               C
Sbjct: 1129 KQIQAVVVKRGFNLDLFVISGVLDMYLK-------------------------------C 1157

Query: 317  GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
            G +E A+ IF  +P+   ++W +MI G  +NG    AL  + +M    ++ D+++ A+++
Sbjct: 1158 GEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLV 1217

Query: 377  SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
             AC+ +++LE G Q+ A    +    D  + TSLVD Y KCG                  
Sbjct: 1218 KACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIA 1277

Query: 419  ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                            +AL  F EM++ GV P  +TF  +LSAC H GLV E  + F +M
Sbjct: 1278 SWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSM 1337

Query: 464  KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
            +  Y I+PEIEHYSC+VD  +RAG + EA  +I  MPFEA   M+ ++L  C    D+  
Sbjct: 1338 QKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRET 1397

Query: 524  GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            G++VAE+++ L+P ++ AY+ LS+++A + +WE  +  R++MR+ +V K PG SW D
Sbjct: 1398 GKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVD 1454



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 185/447 (41%), Gaps = 95/447 (21%)

Query: 161  QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS--VMWNSMISGYISNNED 218
            ++L     PD F  + LI+ Y+ CG ++ AR++FD T DTS   V WN+++S +     D
Sbjct: 651  RILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKARD 710

Query: 219  TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
                 LF  +RR+ V     TLA V   C         + +HG+A K+G+  DV VA AL
Sbjct: 711  --GFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGAL 768

Query: 279  LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF------------ 326
            ++ Y+K G   +A  LF  + + D +L N M+  Y   G   +A  +F            
Sbjct: 769  VNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDD 828

Query: 327  -------RTMPNKS----------------------------LISWNSMIVGLSQNGSPI 351
                   R + +K                             +I+WN  +    Q G   
Sbjct: 829  VTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETW 888

Query: 352  EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
            EA+D F +M    +  D  +   ++S  A ++ LELG+Q+   V   GLD    +   L+
Sbjct: 889  EAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLI 948

Query: 412  DFYCKCGYDALA---------------------------------LFNEMRNTGVKPTII 438
            + Y K G  + A                                 +F ++   G+ P   
Sbjct: 949  NMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQF 1008

Query: 439  TFTAILSACDH----CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
            T  ++L AC      C L  +      AMK    +D  +   + ++D+++++G + EA  
Sbjct: 1009 TVASVLRACSSLGGGCHLATQIHAC--AMKAGVVLDSFVS--TTLIDVYSKSGKMEEAEF 1064

Query: 495  L-IEQMPFEADVGMWSSILRGCVAHGD 520
            L + Q  F  D+  W++++ G +  GD
Sbjct: 1065 LFVNQDGF--DLASWNAMMHGYIVSGD 1089



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 132/587 (22%), Positives = 235/587 (40%), Gaps = 127/587 (21%)

Query: 23   VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIE 80
            +GK+ H   L  G       + N L+ MY +CG+ + A  LFD  P   R+  +WNA++ 
Sbjct: 644  LGKRAHARILTSGHHPDRF-LTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILS 702

Query: 81   GFMKLGHKEKS---LQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGKQIHSHILVNG 135
                  H +K+     LF ++ +    +    ++   K  L  A+    + +H + +  G
Sbjct: 703  A-----HADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIG 757

Query: 136  LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
            L +D  +  +LVN+Y K G    A  + + M   D    + ++  Y + G   +A  +F 
Sbjct: 758  LQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFS 817

Query: 196  -------RTTDTS----------------------------------------SVMWNSM 208
                   R  D +                                         + WN  
Sbjct: 818  EFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKT 877

Query: 209  ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
            +S ++   E  EA+  F  M  + V  D  T   +LS  + L  LE GKQ+HG   + G+
Sbjct: 878  LSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGL 937

Query: 269  IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
               V V + L++ Y K G  S A  +F ++   D                          
Sbjct: 938  DQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVD-------------------------- 971

Query: 329  MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI-SSLEL 387
                 L+SWN+MI G + +G    ++ +F ++ +  L  D+F++ASV+ AC+++     L
Sbjct: 972  -----LVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHL 1026

Query: 388  GEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------GYD------------- 420
              Q+ A     G+  D  +ST+L+D Y K               G+D             
Sbjct: 1027 ATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIV 1086

Query: 421  ------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                  AL L+  M+ +G +   IT      A      +K+G K   A+  +   + ++ 
Sbjct: 1087 SGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQG-KQIQAVVVKRGFNLDLF 1145

Query: 475  HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
              S ++D++ + G +  A  +  ++P   DV  W++++ GCV +G +
Sbjct: 1146 VISGVLDMYLKCGEMESARRIFNEIPSPDDVA-WTTMISGCVENGQE 1191



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 10/165 (6%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTDALLLFD 65
             A L+++C+   ++  G+Q+H + +K   LN      +   L+ MY +CGN  DA  LF 
Sbjct: 1213 FATLVKACSLLTALEQGRQIHANTVK---LNCAFDPFVMTSLVDMYAKCGNIEDARGLFK 1269

Query: 66   EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAAL 121
                    SWNAMI G  + G+ E++LQ F  M  +    +  ++  ++S  + + L + 
Sbjct: 1270 RTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSE 1329

Query: 122  EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
             Y +  +S   + G++ +    S LV+   + G    A +V++ M
Sbjct: 1330 AY-ENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSM 1373



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 25/234 (10%)

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-- 299
           S+L    +   L  GK+ H      G   D  + + L+  YSK G  S A KLF      
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ----NGSPIEALD 355
             D +  N +++ ++   R  D  H+FR +    + +    +  + +    + SP  A  
Sbjct: 691 SRDLVTWNAILSAHADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAES 748

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSLVDFY 414
           L     K+ L+ D F    V  A  NI + + G    ARV   G+   D ++   ++  Y
Sbjct: 749 LHGYAVKIGLQWDVF----VAGALVNIYA-KFGRIREARVLFDGMGLRDVVLWNVMMKAY 803

Query: 415 CKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
              G  Y+AL LF+E   TG++P  +T       C    +VK  Q   + ++WQ
Sbjct: 804 VDTGLEYEALLLFSEFNRTGLRPDDVTL------CTLARVVKSKQ---NVLEWQ 848


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 241/453 (53%), Gaps = 49/453 (10%)

Query: 172 FCLSALISGYANCGKMND---ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           F  S L++ Y++  K+ND   AR +FDR    S + WN++I  Y+ N    + ++LFH++
Sbjct: 49  FVSSRLLALYSD-PKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL 107

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
                L D  TL  V+  C+ LG ++ GKQ+HG A K+G   DV V  +L++ YSK G  
Sbjct: 108 VHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEI 166

Query: 289 SDACKLFSELKVYDTILLNT-----------MITVYSSCGRIEDAKHIFRTMPNKSLISW 337
             A K+F  +   D +L N+           MI  Y   G  + A  +F  MP   L++W
Sbjct: 167 DCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTW 226

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N MI G   NG  ++A+ +F  M KL  R    +L SV+SA + ++ L  G  + + +  
Sbjct: 227 NLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEK 286

Query: 398 IGLDSDQIISTSLVDFYCKCG---------------------------------YDALAL 424
            G + D I+ TSL++ Y KCG                                   ALAL
Sbjct: 287 NGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALAL 346

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F EM  TG+KP  I F  +L+AC+H GLV +G+++FD M  +Y I+P +EHY C+VD+  
Sbjct: 347 FLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILC 406

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544
           RAG L EA N IE MP   +  +W S+L G   HG   +G   A+R+IE+ PE    YI 
Sbjct: 407 RAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYIL 466

Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           LS+++A SG WEK S +R++M ++   K PGCS
Sbjct: 467 LSNMYAASGMWEKVSHVREMMYKRGFRKDPGCS 499



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 140/521 (26%), Positives = 236/521 (45%), Gaps = 70/521 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMP 68
           L Q+C+    +   +QLH   LK  I N    +++RLL +Y   +  +   A  +FD + 
Sbjct: 22  LFQTCSAPQEV---EQLHAFSLKTAIFNHPF-VSSRLLALYSDPKINDLGYARSIFDRIQ 77

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK---NDFSWNMLISGFAKADLAALEYGK 125
           RR+   WN +I+ +++       + LF+ +  +   ++F+   +I G A+  L  ++ GK
Sbjct: 78  RRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCVIKGCAR--LGVVQEGK 135

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD-----------FCL 174
           QIH   L  G   D  +  SLVN+Y KCG+ + A +V + M + D               
Sbjct: 136 QIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSW 195

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           +A+I+GY   G  + A  +F +      V WN MI+GY  N +  +A+ +F  M + G  
Sbjct: 196 NAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR 255

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
              +TL SVLSA S L  L  G+ +H +  K G   D I+ ++L++ Y+K          
Sbjct: 256 PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAK---------- 305

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                CG IE A  +FR +  K +  W ++IVGL  +G    AL
Sbjct: 306 ---------------------CGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHAL 344

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----S 409
            LF  M K  L+ +      V++AC +   ++ G Q F  +    ++  +I  T      
Sbjct: 345 ALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMM----MNEYKIEPTLEHYGC 400

Query: 410 LVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
           LVD  C+ G+   A  N + N  + P  + + ++L    + G +  G+    A +    +
Sbjct: 401 LVDILCRAGHLEEAK-NTIENMPISPNKVIWMSLLGGSRNHGKIDIGEY---AAQRVIEV 456

Query: 470 DPE-IEHYSCMVDLFARAGCLNEAVNLIEQM---PFEADVG 506
            PE I  Y  + +++A +G   +  ++ E M    F  D G
Sbjct: 457 APETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPG 497


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 180/604 (29%), Positives = 290/604 (48%), Gaps = 103/604 (17%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C     + +G   H   LK G L   L + + LL MY +CG   +A +LFD    +N  S
Sbjct: 309 CARQGEVRLGMVFHGLALKLG-LCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVIS 366

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML----ISGFAKADLAALEYGKQIHSH 130
           WN+MI G+ K      + +L   M  ++    N +    +    + ++  L+  K+IH +
Sbjct: 367 WNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKL-KEIHGY 425

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            L +G                                + D+   +A ++GYA CG ++ A
Sbjct: 426 ALRHGF------------------------------IQSDELVANAFVAGYAKCGSLHYA 455

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
             VF          WN++I G++ N    +AL L+  MR +G+  D  T+AS+LSAC+ L
Sbjct: 456 EGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARL 515

Query: 251 GFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
             L  GK++HG   + G  +D+ I  S                                +
Sbjct: 516 KSLSCGKEIHGSMLRNGFELDEFICIS--------------------------------L 543

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           +++Y  CG+I  AK  F  M  K+L+ WN+MI G SQN  P +ALD+F  M    +  D+
Sbjct: 544 VSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDE 603

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD- 420
            S+   + AC+ +S+L LG+++        L     ++ SL+D Y KCG        +D 
Sbjct: 604 ISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDR 663

Query: 421 ------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                   A+ LF  M+N G +P  +TF A+L+AC+H GLV EG
Sbjct: 664 VHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEG 723

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            ++   M+  + I P++EHY+C+VD+  RAG LNEA+ L+ ++P + D  +WSS+L  C 
Sbjct: 724 LEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCR 783

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            + D  +G KVA +++EL P+ A  Y+ +S+ +A  G+W++   +R  M+E  + K  GC
Sbjct: 784 NYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGC 843

Query: 577 SWAD 580
           SW +
Sbjct: 844 SWIE 847



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 138/564 (24%), Positives = 252/564 (44%), Gaps = 102/564 (18%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H + L+ G + S   +AN  +  Y +CG+   A  +F  M  +   SWNA+I G ++
Sbjct: 420 KEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQ 479

Query: 85  LGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
            G   K+L L+ +M     + + F+   L+S  A+  L +L  GK+IH  +L NG + D 
Sbjct: 480 NGFPRKALDLYLLMRGSGLEPDLFTIASLLSACAR--LKSLSCGKEIHGSMLRNGFELDE 537

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            +  SLV+LY +CG    A    + M+E +  C                           
Sbjct: 538 FICISLVSLYVQCGKILLAKLFFDNMEEKNLVC--------------------------- 570

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
               WN+MI+G+  N    +AL +FH+M  + +  D  ++   L ACS +  L  GK++H
Sbjct: 571 ----WNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELH 626

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
             A K  + +   V  +L+D Y+K                               CG +E
Sbjct: 627 CFAVKSHLTEHSFVTCSLIDMYAK-------------------------------CGCME 655

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            +++IF  +  K  ++WN +I G   +G   +A++LF +M     R D  +  ++++AC 
Sbjct: 656 QSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACN 715

Query: 381 NISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTI 437
           +   +  G +   ++ ++ G+         +VD   + G   +AL L NE+ +   KP  
Sbjct: 716 HAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPD---KPDS 772

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLI 496
             ++++LS+C +   +  G+K  + +     + P+  E+Y  + + +AR G  +E   + 
Sbjct: 773 RIWSSLLSSCRNYRDLDIGEKVANKL---LELGPDKAENYVLISNFYARLGKWDEVRKMR 829

Query: 497 EQMP---FEADVGMWSSILRGCVAH---GDKGL--GRKVAERMIELD---------PENA 539
           ++M     + D G     + G V+    GD+ L    K+ +  IEL+         P+ +
Sbjct: 830 QRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTS 889

Query: 540 CAYIQLSSIFATSGEWEKSSLIRD 563
           C   +L        E EK  ++R+
Sbjct: 890 CVLHELE-------EDEKIKILRN 906



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 129/546 (23%), Positives = 235/546 (43%), Gaps = 109/546 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C  + +I +G+++H          + + +  RL+ MY  C +P D+ L+F+   R+
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW-NMLISGFAKADLAA--LEYGKQI 127
           N F WNA++ G+++      ++ +F  M    +F   N  +    KA +    +  G+ +
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H   L   +  D  +G++L+ +YGK G   S                             
Sbjct: 219 HGFALKTKVLSDVFVGNALIAMYGKFGFVES----------------------------- 249

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--NGVLEDASTLASVLS 245
             A +VFD+    + V WNS++   + N    E+  LF  +     G++ D +T+ +V+ 
Sbjct: 250 --AVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIP 307

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            C+  G +  G   HG A K+G+  ++ V S+LLD YSK                     
Sbjct: 308 LCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSK--------------------- 346

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD- 364
                     CG + +A+ +F T   K++ISWNSMI G S++     A +L   M   D 
Sbjct: 347 ----------CGYLCEARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDK 395

Query: 365 LRMDKFSLASVISAC-ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
           +++++ +L +V+  C   I  L+L E     +    + SD++++ + V  Y KCG     
Sbjct: 396 VKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYA 455

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         AL L+  MR +G++P + T  ++LSAC   
Sbjct: 456 EGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARL 515

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSC--MVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
             +  G++   +M        E++ + C  +V L+ + G +  A    + M  E ++  W
Sbjct: 516 KSLSCGKEIHGSM---LRNGFELDEFICISLVSLYVQCGKILLAKLFFDNME-EKNLVCW 571

Query: 509 SSILRG 514
           ++++ G
Sbjct: 572 NTMING 577


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 176/602 (29%), Positives = 294/602 (48%), Gaps = 68/602 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C    +   G Q+H   +K G L   + I N L+  Y  CG+      +F+ M  R
Sbjct: 137 VLSGCTKIAAFCEGIQVHGSVVKMG-LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER 195

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADLAALEYGKQIH 128
           N  SW ++I G+ +    ++++ LF  M +      S  M+    A A L  L+ G+++ 
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVC 255

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           ++I   GL  + V+ ++LV++Y K                               CG ++
Sbjct: 256 AYIGELGLKLNKVMVNALVDMYMK-------------------------------CGAID 284

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            A+R+FD   D + V++N+++S Y       EAL +  +M + G   D  T+ S +SA +
Sbjct: 285 AAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASA 344

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            L  L +GK  HG+  + G+     + + ++D Y K G P  AC++F  +     +  N+
Sbjct: 345 QLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNS 404

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +   +   G +E A  +F  +P ++ + WN+MI GL Q     +A++LF  M    ++ D
Sbjct: 405 LTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKAD 464

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
           + ++  + SAC  + + EL + V   +   G+  D  ++T+LVD + +CG          
Sbjct: 465 RVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFN 524

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                    A  LFN+M   GVKP ++ F  +L+AC H G V++
Sbjct: 525 KMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQ 584

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G   F  M+  + I P+IEHY CMVDL  RAG L EA +LI+ MP E +  +W S+L  C
Sbjct: 585 GLHIFSLME-DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAAC 643

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             H +  +    AER+ EL P+ A  ++ LS+I+A++G+W   + +R  +REK V K+PG
Sbjct: 644 RVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPG 703

Query: 576 CS 577
            S
Sbjct: 704 SS 705



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 149/347 (42%), Gaps = 66/347 (19%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS---ANQVLNMMKEPDDFCLSALISGY 181
           KQ+H  I  NGLD      + LVN   +     S   A +   + KE             
Sbjct: 42  KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE------------- 88

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
                        D  +D +  M NS+I GY S     EA+LL+ +M   GV  +  T  
Sbjct: 89  -------------DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFP 135

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            VLS C+ +     G QVHG   K+G+ +DV +                           
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQ-------------------------- 169

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                N +I  Y+ CG ++    +F  M  ++++SW S+I G ++   P EA+ LF  M 
Sbjct: 170 -----NCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMV 224

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
           +  +R    ++  VISACA +  L++GE+V A +  +GL  ++++  +LVD Y KCG   
Sbjct: 225 EAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAID 284

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
            A  LF+E     V   ++ +  ILS     GL +E     D M  Q
Sbjct: 285 AAKRLFDEC----VDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 180/611 (29%), Positives = 296/611 (48%), Gaps = 111/611 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C    SI  G  LH H LK G    T  +   L+ MY +C +   A  +FDEMP+R
Sbjct: 52  LLKACANLPSIQHGTMLHGHVLKLGFQADTF-VQTALVDMYSKCSHVASARQVFDEMPQR 110

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALEY- 123
           +  SWNAM+  + +    +++L L   M      P  + F    ++SG++  D  + E+ 
Sbjct: 111 SVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFV--SILSGYSNLD--SFEFH 166

Query: 124 --GKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
             GK IH  ++  G+ +  V L +SL+ +Y +                   FCL      
Sbjct: 167 LLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQ-------------------FCL------ 201

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
                 M++AR+VFD   + S + W +MI GY+      EA  LF++M+   V  D    
Sbjct: 202 ------MDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVF 255

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            +++S C  +  L     VH    K G  +   V                          
Sbjct: 256 LNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVE------------------------- 290

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                 N +IT+Y+ CG +  A+ IF  +  KS++SW SMI G    G P EALDLF  M
Sbjct: 291 ------NLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRM 344

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
            + D+R +  +LA+V+SACA++ SL +G+++   + + GL+SDQ + TSL+  Y KCG  
Sbjct: 345 IRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSI 404

Query: 420 --------------------------------DALALFNEMRNT-GVKPTIITFTAILSA 446
                                           +A++LF++M    G+ P  I +T++  A
Sbjct: 405 VKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLA 464

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GLV+EG K+F +M+  + I P +EH +C++DL  R G L+ A+N I+ MP +    
Sbjct: 465 CSHSGLVEEGLKYFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQ 524

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W  +L  C  HG+  LG     R+++  P ++ +Y+ +++++ + G+W+++ ++R+ M 
Sbjct: 525 VWGPLLSACRIHGNVELGELATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMD 584

Query: 567 EKHVGKLPGCS 577
            K + K  G S
Sbjct: 585 GKGLVKESGWS 595



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/491 (22%), Positives = 203/491 (41%), Gaps = 105/491 (21%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYG 124
           RR+ ++WN MI      G   ++L +++ M       N+ ++ +L+   A A+L ++++G
Sbjct: 8   RRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLK--ACANLPSIQHG 65

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
             +H H+L  G                                + D F  +AL+  Y+ C
Sbjct: 66  TMLHGHVLKLGF-------------------------------QADTFVQTALVDMYSKC 94

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             +  AR+VFD     S V WN+M+S Y   +   +AL L  +M   G    AST  S+L
Sbjct: 95  SHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSIL 154

Query: 245 SACSSLGFLEH---GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           S  S+L   E    GK +H    K+G++                                
Sbjct: 155 SGYSNLDSFEFHLLGKSIHCCLIKLGIV------------------------------YL 184

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           +  L N+++ +Y     +++A+ +F  M  KS+ISW +MI G  + G  +EA  LF  M 
Sbjct: 185 EVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQ 244

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
              + +D     ++IS C  +  L L   V + V   G +    +   L+  Y KCG   
Sbjct: 245 HQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLT 304

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +AL LF  M  T ++P   T   ++SAC 
Sbjct: 305 SARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACA 364

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
             G +  GQ+  +   +   ++ + +  + ++ ++++ G + +A  + E++  + D+ +W
Sbjct: 365 DLGSLSIGQE-IEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVT-DKDLTVW 422

Query: 509 SSILRGCVAHG 519
           +S++     HG
Sbjct: 423 TSMINSYAIHG 433



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 161/374 (43%), Gaps = 77/374 (20%)

Query: 5   IDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           ID++    L+  C     + +   +H   LK G  N   P+ N L+ MY +CGN T A  
Sbjct: 250 IDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGC-NEKDPVENLLITMYAKCGNLTSARR 308

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADL 118
           +FD +  ++  SW +MI G++ LGH  ++L LF  M     + N  +   ++S  A ADL
Sbjct: 309 IFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVS--ACADL 366

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            +L  G++I  +I +NGL+ D  + +SL+++Y KCG    A +V   + + D    +++I
Sbjct: 367 GSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMI 426

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDA 237
           + YA  G  N+                               A+ LFHKM    G++ DA
Sbjct: 427 NSYAIHGMGNE-------------------------------AISLFHKMTTAEGIMPDA 455

Query: 238 STLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSK-----------R 285
               SV  ACS  G +E G K         G+   V   + L+D   +           +
Sbjct: 456 IVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQ 515

Query: 286 GMPSDA-----CKLFSELKVYDTILLNTMITV-------------------YSSCGRIED 321
           GMP D        L S  +++  + L  + TV                   Y+S G+ ++
Sbjct: 516 GMPPDVQAQVWGPLLSACRIHGNVELGELATVRLLDSSPGSSGSYVLMANLYTSLGKWKE 575

Query: 322 AKHIFRTMPNKSLI 335
           A  +  +M  K L+
Sbjct: 576 AHMMRNSMDGKGLV 589



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 157/383 (40%), Gaps = 76/383 (19%)

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           R  F R+  T    WN MI    +N   T+ L ++  M  +GV  +  T   +L AC++L
Sbjct: 4   RPSFRRSLYT----WNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANL 59

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             ++HG  +HGH  K+G   D  V +AL+D YSK    + A ++F E+            
Sbjct: 60  PSIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEM------------ 107

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                              P +S++SWN+M+   S+  S  +AL L   M  L       
Sbjct: 108 -------------------PQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTAS 148

Query: 371 SLASVISACANISSLE---LGEQVF-------------------------------ARVT 396
           +  S++S  +N+ S E   LG+ +                                AR  
Sbjct: 149 TFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKV 208

Query: 397 IIGLDSDQIIS-TSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHC-GL 452
              +D   IIS T+++  Y K G+  +A  LF +M++  V    + F  ++S C     L
Sbjct: 209 FDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDL 268

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           +         +K   +    +E+   ++ ++A+ G L  A  + + +  E  +  W+S++
Sbjct: 269 LLASSVHSLVLKCGCNEKDPVEN--LLITMYAKCGNLTSARRIFD-LIIEKSMLSWTSMI 325

Query: 513 RGCVAHGDKGLGRKVAERMIELD 535
            G V  G  G    +  RMI  D
Sbjct: 326 AGYVHLGHPGEALDLFRRMIRTD 348


>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
          Length = 677

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 176/583 (30%), Positives = 296/583 (50%), Gaps = 61/583 (10%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           LL+   +  +P    +L  ++ +     + ++  A+ + +MKL     +L++F  MP +N
Sbjct: 99  LLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRN 158

Query: 103 DFSWNMLISGFAKADL--AALEYGKQIH-SHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 159
             S N+ ISGF++      AL   KQ+   +   N +   SVL +        C      
Sbjct: 159 LPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPA--------CASVELD 210

Query: 160 NQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 215
            QV    + +  E D +  +A+++ Y+NCG++  A++VFD+  D + V +N+ ISG + N
Sbjct: 211 GQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQN 270

Query: 216 NEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
                   +F  +   +G + ++ TL S+LSACS L ++  G+Q+HG   K+ +  D +V
Sbjct: 271 GAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMV 330

Query: 275 ASALLDTYSKRGMPSDACKLFSELK-VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
            +AL+D YSK G    A  +F EL    + +  N+MI      G+ + A  +F  +  + 
Sbjct: 331 GTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEG 390

Query: 334 L----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           L     +WN+MI G SQ G  +EA   F  M    +     S+ S++ AC+ +S+L+ G+
Sbjct: 391 LEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGK 450

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA-------------------------- 423
           ++        +D+D+ IST+L+D Y KCG+  LA                          
Sbjct: 451 EIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGR 510

Query: 424 ---------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                    +FN+M+   V+P   T  +ILS C H G +  G + F  M   Y ++P  E
Sbjct: 511 NGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSE 570

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           H+ CMVDL  R+G L EA  LI +MP EA V +++S+L  C  H D  LG ++A+++ EL
Sbjct: 571 HFGCMVDLLGRSGRLKEAQELIHEMP-EASVSVFASLLGACRHHSDSALGEEMAKKLSEL 629

Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +P++   ++ LS+I+A  G W     +R++M ++ + K PGCS
Sbjct: 630 EPQDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLKKPPGCS 672



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 219/457 (47%), Gaps = 56/457 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    S+ +  Q+H   +K G+  S + +A  ++ MY  CG    A  +FD++
Sbjct: 197 IASVLPACA---SVELDGQVHCLAIKLGV-ESDIYVATAVVTMYSNCGELVLAKKVFDQI 252

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKADLAALE 122
             +N  S+NA I G ++ G       +F  + +      N  +   ++S  +K  L  + 
Sbjct: 253 LDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSK--LLYIR 310

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-SALISGY 181
           +G+QIH  ++   ++FD+++G++LV++Y KCG ++ A  +   +    +    +++I+G 
Sbjct: 311 FGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGM 370

Query: 182 ANCGKMNDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
              G+ + A  +F++      +  S  WN+MISG+    +  EA   FHKM+  GV+   
Sbjct: 371 MLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASL 430

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            ++ S+L ACS+L  L+ GK++HGH  +  +  D  +++AL+D Y K G    A ++F +
Sbjct: 431 KSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQ 490

Query: 298 LKVY--DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            ++   D    N MI+ Y   GR                            NG    A +
Sbjct: 491 FQIKPDDPAFWNAMISGY---GR----------------------------NGKYQSAFE 519

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFY 414
           +F  M +  ++ +  +L S++S C++   ++ G Q+F  +    GL+        +VD  
Sbjct: 520 IFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLL 579

Query: 415 CKCGY--DALALFNEMRNTGVKPTIITFTAILSACDH 449
            + G   +A  L +EM    V      F ++L AC H
Sbjct: 580 GRSGRLKEAQELIHEMPEASVS----VFASLLGACRH 612



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 160/363 (44%), Gaps = 72/363 (19%)

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           I+  +SN    EAL L+ K+  + VLE   T   +L A + L     G+ +H    K G 
Sbjct: 65  IAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGF 124

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
             D+  A+AL D Y K  + S A K+F E                               
Sbjct: 125 HLDIYAATALADMYMKLHLLSYALKVFEE------------------------------- 153

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           MP+++L S N  I G S+NG   EAL  F  +   + R +  ++ASV+ ACA   S+EL 
Sbjct: 154 MPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACA---SVELD 210

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LFNE------------------- 427
            QV      +G++SD  ++T++V  Y  CG   LA  +F++                   
Sbjct: 211 GQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQN 270

Query: 428 -------------MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                        + ++G  P  +T  +ILSAC     ++ G++    +  +  I+ +  
Sbjct: 271 GAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQ-IHGLVVKIEINFDTM 329

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
             + +VD++++ GC + A  +  ++    ++  W+S++ G + +G   +  ++ E   +L
Sbjct: 330 VGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFE---QL 386

Query: 535 DPE 537
           +PE
Sbjct: 387 EPE 389


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  278 bits (711), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 192/621 (30%), Positives = 296/621 (47%), Gaps = 95/621 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C     +  GK LH  + K  I  ST  ++N    +Y +CG+  +A   FD     
Sbjct: 15  LLKACIAQRDLITGKTLHALYFKSLIPPSTY-LSNHFTLLYSKCGSLHNAQTSFDLTQYP 73

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N FS+N +I  + K      + Q+F+ +PQ +  S+N LI+ +A  D        ++ + 
Sbjct: 74  NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYA--DRGECRPALRLFAE 131

Query: 131 I--LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-----------SAL 177
           +  L  GLD     G +L  +   CGD       + ++++   F +           +A+
Sbjct: 132 VRELRFGLD-----GFTLSGVIIACGD------DVGLVRQLHCFVVVCGYDCYASVNNAV 180

Query: 178 ISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           ++ Y+  G +N+ARRVF    +      V WN+MI     + E  EA+ LF +M R G+ 
Sbjct: 181 LACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLK 240

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D  T+ASVL+A + +  L  G Q HG   K G   +  V S L+D YSK          
Sbjct: 241 VDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSK---------- 290

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE-A 353
                                 G + + + +F  +    L+ WN+MI G SQ     E  
Sbjct: 291 --------------------CAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDG 330

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVD 412
           +  F  M       D  S   V SAC+N+SS  +G+QV A      +  +++ ++ +LV 
Sbjct: 331 IWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVA 390

Query: 413 FYCKCG---------------------------------YDALALFNEMRNTGVKPTIIT 439
            Y KCG                                  ++L LF  M    + P  IT
Sbjct: 391 MYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTIT 450

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           F A+LSAC H G V+EGQK+F+ MK ++ I+PE EHYSCM+DL  RAG L EA  +IE M
Sbjct: 451 FIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETM 510

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           PF      W+++L  C  HG+  L  K A   ++L+P NA  Y+ LS+++A++  WE+++
Sbjct: 511 PFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAA 570

Query: 560 LIRDIMREKHVGKLPGCSWAD 580
            ++ +MRE+ V K PGCSW +
Sbjct: 571 TVKRLMRERGVKKKPGCSWIE 591



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 115/255 (45%), Gaps = 15/255 (5%)

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T  ++L AC +   L  GK +H    K  +     +++     YSK G   +A   F  
Sbjct: 10  QTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDL 69

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
            +  +    NT+I  Y+    I  A+ +F  +P   ++S+N++I   +  G    AL LF
Sbjct: 70  TQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLF 129

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             + +L   +D F+L+ VI AC +   + L  Q+   V + G D    ++ +++  Y + 
Sbjct: 130 AEVRELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRK 187

Query: 418 GY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
           G+  +A  +F EM   G +   +++ A++ A   CG  +EG +  +  +       E+  
Sbjct: 188 GFLNEARRVFREMGEGGGRDE-VSWNAMIVA---CGQHREGLEAVELFR-------EMVR 236

Query: 476 YSCMVDLFARAGCLN 490
               VD+F  A  L 
Sbjct: 237 RGLKVDMFTMASVLT 251


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  278 bits (711), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 175/592 (29%), Positives = 284/592 (47%), Gaps = 99/592 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G  +H + +K G   +   + N L+  Y +     DAL++FDEMP+R+  SWN++I G  
Sbjct: 3   GLVVHGYLVKYG-FGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 84  KLGHKEKSLQLFNVM-PQKNDFSWNMLISGFAKADLAALEY-GKQIHSHILVNGLDFDSV 141
             G  +K+++LF  M  +  +     L+S       +   + G  +H + +  GL  ++ 
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           LG++L+++Y                               +NC       ++F      +
Sbjct: 122 LGNALLDMY-------------------------------SNCSDWRSTNKIFRNMEQKN 150

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            V W +MI+ Y       +   LF +M   G+  D   + S L A +    L+HGK VHG
Sbjct: 151 VVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHG 210

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
           +A + G+ + + VA+AL++ Y K                               CG +E+
Sbjct: 211 YAIRNGIEEVLPVANALMEMYVK-------------------------------CGYMEE 239

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+ IF  +  K  ISWN++I G S++    EA  LF  M  L LR +  ++A ++ A A+
Sbjct: 240 ARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEM-LLQLRPNAVTMACILPAAAS 298

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------- 418
           +SSLE G ++ A     G   D  ++ +LVD Y KCG                       
Sbjct: 299 LSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIM 358

Query: 419 ----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
                      DA+ALF +M+ +G++P   +F+AIL AC H GL  EG ++F+AM+ ++ 
Sbjct: 359 IAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHR 418

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
           I+P+++HY+CMVDL    G L EA   IE MP E D  +W S+LRGC  H +  L  KVA
Sbjct: 419 IEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVA 478

Query: 529 ERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           E + EL+PEN   Y+ L++I+A +  WE    +++ +  + + +  GCSW +
Sbjct: 479 EMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIE 530



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 119/238 (50%), Gaps = 33/238 (13%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+  GK +H + ++ GI    LP+AN L++MY++CG   +A  +FD + +++  SWN +I
Sbjct: 201 SLKHGKSVHGYAIRNGI-EEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLI 259

Query: 80  EGFMKLGHKEKSLQLFNVM-PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            G+ +     ++  LFN M  Q    +  M     A A L++LE G+++H++ +  G   
Sbjct: 260 GGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLE 319

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D+ + ++LV++Y KCG    A ++ +M+   +    + +I+GY   G+  D         
Sbjct: 320 DNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRD--------- 370

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                                 A+ LF +M+ +G+  DA + +++L ACS  G  + G
Sbjct: 371 ----------------------AIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEG 406



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +  +  S+  G+++H + +++G L     +AN L+ MY++CG    A  LFD +
Sbjct: 289 MACILPAAASLSSLERGREMHAYAVRRGYLEDNF-VANALVDMYVKCGALLLARRLFDML 347

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS 105
             +N  SW  MI G+   G    ++ LF  M      P    FS
Sbjct: 348 TNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFS 391


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 189/682 (27%), Positives = 311/682 (45%), Gaps = 144/682 (21%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L+ +L  CN       G+Q+H + ++  +      +   L+ MY  C  P +A  LF ++
Sbjct: 550  LSIVLGICNRLSWYMAGRQIHGYIIRN-MFEGDPYLETALIGMYSSCSRPMEAWSLFGKL 608

Query: 68   PRR-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA-----AL 121
              R N  +WN MI GF++ G  EKSL+L+++   +N     ++ + F  A  A      L
Sbjct: 609  ENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNEN---CKLVSASFTGAFTACSHGEVL 665

Query: 122  EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA----NQVL-------------- 163
            ++G+Q+H  ++      D  + +SL+ +Y K G    A    +QVL              
Sbjct: 666  DFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAF 725

Query: 164  -------------NMMK----EPDDFCLSALISG-------------------------- 180
                         N MK      D F +S+L+SG                          
Sbjct: 726  IGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNV 785

Query: 181  ---------YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
                     Y  CG   DA  VF    +   V W SMI+G+  N    +AL LF  M + 
Sbjct: 786  AIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKE 845

Query: 232  GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
            GV  D+  + SV+SA   L  +E G  +HG A K G+  DV VA +L+D YSK G     
Sbjct: 846  GVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFA--- 902

Query: 292  CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
                                        E A+ +F +MPNK+L++WNSMI   S NG P 
Sbjct: 903  ----------------------------ESAEMVFSSMPNKNLVAWNSMISCYSWNGLPE 934

Query: 352  EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
             +++L   + +    +D  S+ +V+ A +++++L  G+ + A    + + SD  +  +L+
Sbjct: 935  MSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALI 994

Query: 412  DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
            D Y KCG                                  +A+ LF EM+ +   P  +
Sbjct: 995  DMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEV 1054

Query: 439  TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
            TF A++++C H G+V+EG   F  M+ +Y ++P +EHY+ +VDL  RAG L++A + I  
Sbjct: 1055 TFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRG 1114

Query: 499  MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
            MP +AD  +W  +L  C AH +  LG  VA+ +++++P     Y+ L +++     W+++
Sbjct: 1115 MPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRA 1174

Query: 559  SLIRDIMREKHVGKLPGCSWAD 580
            + +R  M+ + + K PGCSW +
Sbjct: 1175 ANLRASMKGRGLKKSPGCSWIE 1196



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/544 (23%), Positives = 227/544 (41%), Gaps = 108/544 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C +  +++ G+ +H   +  G L S   IA  L+ MY++CG    AL +FD+M   
Sbjct: 447 LLKTCASLSNLYHGRTIHASIVTMG-LQSDPYIATSLINMYVKCGLLGSALQVFDKMSES 505

Query: 71  -----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAAL 121
                +   WN +I+G+ K GH E+ L  F  M +     + +S ++++    +  L+  
Sbjct: 506 RDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNR--LSWY 563

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             G+QIH +I+ N  + D  L ++L+ +Y  C                     S  +  +
Sbjct: 564 MAGRQIHGYIIRNMFEGDPYLETALIGMYSSC---------------------SRPMEAW 602

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           +  GK+ +   +         V WN MI G++ N    ++L L+   +       +++  
Sbjct: 603 SLFGKLENRSNI---------VAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFT 653

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
              +ACS    L+ G+QVH    K+   DD  V ++LL  Y+K G   DA K+F ++   
Sbjct: 654 GAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDK 713

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           +  L N MI+ +   GR  D                               AL L+  M 
Sbjct: 714 EVELRNAMISAFIGNGRAYD-------------------------------ALGLYNKMK 742

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
             +  +D F+++S++S C+ + S + G  V A V    + S+  I ++L+  Y KCG   
Sbjct: 743 AGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTE 802

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          DAL LF  M   GVK      T+++SA  
Sbjct: 803 DADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGL 862

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
               V+ G         +  ++ ++     +VD++++ G    A  +   MP   ++  W
Sbjct: 863 GLENVELGH-LIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMP-NKNLVAW 920

Query: 509 SSIL 512
           +S++
Sbjct: 921 NSMI 924



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 129/555 (23%), Positives = 220/555 (39%), Gaps = 111/555 (20%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           N  +P+   + ++      P  A+L    +P+         I+  ++ G   ++L+L + 
Sbjct: 378 NVKMPVLTAVARIIDNELTPKKAVLELMNLPQVE------EIKALVQQGKYSQALELHSK 431

Query: 98  MPQKNDFSWNMLISGFAK--ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155
            P     +         K  A L+ L +G+ IH+ I+  GL  D  + +SL+N+Y KCG 
Sbjct: 432 TPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGL 491

Query: 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 215
             SA QV +                     KM+++R   D   D +  +WN +I GY   
Sbjct: 492 LGSALQVFD---------------------KMSESR---DSAPDIT--VWNPVIDGYFKY 525

Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
               E L  F +M+  G+  D  +L+ VL  C+ L +   G+Q+HG+  +     D  + 
Sbjct: 526 GHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLE 585

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
           +AL+  YS    P +A  LF                     G++E+  +I         +
Sbjct: 586 TALIGMYSSCSRPMEAWSLF---------------------GKLENRSNI---------V 615

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           +WN MI G  +NG   ++L+L+      + ++   S     +AC++   L+ G QV   V
Sbjct: 616 AWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDV 675

Query: 396 TIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
             +    D  + TSL+  Y K G                                  V++
Sbjct: 676 IKMNFQDDPYVCTSLLTMYAKSGS---------------------------------VED 702

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSIL 512
            +K FD +     +D E+E  + M+  F   G   +A+ L  +M       D    SS+L
Sbjct: 703 AKKVFDQV-----LDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLL 757

Query: 513 RGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
            GC   G    GR V   +I+   + N      L +++   G  E +  +   M+E+ V 
Sbjct: 758 SGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDV- 816

Query: 572 KLPGCSWADGIAFNC 586
                +W   IA  C
Sbjct: 817 ----VAWGSMIAGFC 827


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 174/614 (28%), Positives = 294/614 (47%), Gaps = 102/614 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L++C       +GK +H + +K G  +S L ++   + MY +CG    A L FD++
Sbjct: 149 LATVLKACGGLGCSRIGKCVHGYAVKIG-FDSDLFVSGSTVYMYCKCGILDMAGLAFDQI 207

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             ++  +WN MI G+ +  ++E++++LF  M     + ND ++  ++   A   ++    
Sbjct: 208 ENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLK--ASTAMSDSAV 265

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+  H+ +L  G   D  + ++LV++Y K  D                            
Sbjct: 266 GRCFHAKVLKLGCSMDVFVATALVDMYSKFYD---------------------------- 297

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
              + D  R F   +  + V +N++I+GY    +  EAL ++ +++  G+  D+ T   +
Sbjct: 298 ---IEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGL 354

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
            S+CS    +  G QVH H+ K G+  DV V +++++ YSK                   
Sbjct: 355 FSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSK------------------- 395

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       CG  + A   F ++   + + W  +I G +QNG   +AL  FC M K 
Sbjct: 396 ------------CGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKF 443

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
             + D+FS +SVI A ++ +++E G  + A V   GLD    + ++++D Y KCG     
Sbjct: 444 IDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDA 503

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF EM ++G+ PT +TF  IL AC H 
Sbjct: 504 QKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHA 563

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG+ +++ M   Y I P +EH +CMVDL  RAG L EA   +    F  + G+W S
Sbjct: 564 GLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWGS 623

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +G + A+  + L+P  + +Y  LS+I+A+   W + S IRD+M++  V
Sbjct: 624 LLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSRIRDLMKDMGV 683

Query: 571 GKLPGCSWADGIAF 584
            K PGCSW + + F
Sbjct: 684 EKEPGCSWIESLRF 697



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 142/548 (25%), Positives = 231/548 (42%), Gaps = 106/548 (19%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + +C       +   LH   LKKG  N  L +++ L+ MY +     +A  LFD+MP R+
Sbjct: 48  ISACAQSTRPSLATSLHCLILKKGFSNQ-LFVSSGLISMYSKHDRIKEARFLFDDMPERD 106

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD-------LAALEYG 124
             SWN+MI G+ + G  E++  LF  M    + +W +L+S F  A        L     G
Sbjct: 107 DVSWNSMIAGYSQRGLNEEACGLFCSMINSCE-NWKLLVSDFTLATVLKACGGLGCSRIG 165

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K +H + +  G D D  +  S V +Y KCG       +L+M                   
Sbjct: 166 KCVHGYAVKIGFDSDLFVSGSTVYMYCKCG-------ILDM------------------- 199

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                A   FD+  +   V WN+MI+GY  N  + EA+ LF++M   G   + +T   VL
Sbjct: 200 -----AGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVL 254

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            A +++     G+  H    K+G   DV VA+AL+D YSK     D  + F E+   + +
Sbjct: 255 KASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLV 314

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N +IT YS  G+ E                               EAL ++  +    
Sbjct: 315 SFNALITGYSLMGKYE-------------------------------EALRVYSQLQSEG 343

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           +  D F+   + S+C+  S++  G QV       GLDSD  +  S+V+FY KCG+     
Sbjct: 344 MEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSAL 403

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                        AL  F +MR    K    + ++++ A     
Sbjct: 404 EAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWA 463

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V++G+    A   +  +D  I   S ++D++++ G + +A  +   MP E +V  W+S+
Sbjct: 464 AVEQGRH-LHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMP-EKNVVSWNSM 521

Query: 512 LRGCVAHG 519
           + G   +G
Sbjct: 522 ITGYAQNG 529



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 112/281 (39%), Gaps = 60/281 (21%)

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           +T+ V W S I+         +AL  F +M R G+  +A T ++ +SAC+          
Sbjct: 3   ETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATS 62

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +H    K G  + + V+S L+  YSK     +A  LF ++   D +  N+MI  YS  G 
Sbjct: 63  LHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGL 122

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
            E+A  +F +M N S  +W                           L +  F+LA+V+ A
Sbjct: 123 NEEACGLFCSMIN-SCENWK--------------------------LLVSDFTLATVLKA 155

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------- 419
           C  +    +G+ V      IG DSD  +S S V  YCKCG                    
Sbjct: 156 CGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAW 215

Query: 420 --------------DALALFNEMRNTGVKPTIITFTAILSA 446
                         +A+ LF +M   G KP   TF  +L A
Sbjct: 216 NTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKA 256


>gi|302776320|ref|XP_002971335.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
 gi|300161317|gb|EFJ27933.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
          Length = 614

 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 169/601 (28%), Positives = 296/601 (49%), Gaps = 64/601 (10%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+ C +   +   KQ      + G       + N L+Q Y +CG+  DA  +FD + 
Sbjct: 16  ASILRDCASTRDLTAAKQAQWEIARDG-FGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQ 74

Query: 69  RRNCFSWNAMIEGFM--------------KLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
           RRN FSW  M+  +               K GH E++  +F  + ++N  SWN +++ +A
Sbjct: 75  RRNIFSWTIMLGAYADNGHGREALGLMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYA 134

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA--NQVLNMMKEPDDF 172
           +      E   +++  +   G+  D+    S+++ +   G+      +QV+      +  
Sbjct: 135 QN--GHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGEHGRRIHDQVVESGFGSNTT 192

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
             +AL+S Y + G+++DAR VFD   + + V WN+M++ Y  N    EA+ LF KM    
Sbjct: 193 LANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGEAVDLFWKM---D 249

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           V  D  +  +VL AC  +   E G+ VH H    G    V+V+++L++ Y +     +A 
Sbjct: 250 VAPDTVSFVNVLGACMDI---EEGRLVHEHIKASGFPVGVLVSTSLVNMYGRFLRLEEAK 306

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
           + F + +  D +  N+M+  Y+  G +E+AK +F  + +K ++ W +++   S+N     
Sbjct: 307 QCFEQARERDRVCWNSMVGAYAQNGCMEEAKAVFDRVASKDIVLWTALLTAYSRNEDAKG 366

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL ++ NM+   +  ++F+ +S++S CA+  +L  G++V      +G D D I+ T+LVD
Sbjct: 367 ALLVYRNMDLEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHTVSVGYDKDVIVGTTLVD 426

Query: 413 FYCKC---------------------------------GYDALALFNEMR------NTGV 433
           FY KC                                 G +A+ L+ +M         G+
Sbjct: 427 FYSKCHDVDTARSVFDGIEGKDIVTWNVMITGFVRNGHGREAVRLYQKMDLPPDSLTMGI 486

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
            P  +TF ++L AC H G +++G   F +    Y I    +HY C+VD+  R G L EA 
Sbjct: 487 MPDELTFLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQ 546

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
            ++ +MPF+A+   W ++L  C  H D   GR+ A+ +IELDP+NA  Y  LS++F+ +G
Sbjct: 547 EVLNRMPFQANDVAWMTLLGACRIHRDFEQGRRAADYVIELDPQNAAPYALLSTMFSAAG 606

Query: 554 E 554
            
Sbjct: 607 R 607



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 26/251 (10%)

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           S+ AS+L  C+S   L   KQ      + G   D  + + L+  Y K G   DA ++F  
Sbjct: 13  SSHASILRDCASTRDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDR 72

Query: 298 LKVYD----TILLNTMIT----------VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           ++  +    TI+L               +Y  CG +E+AK +F T+  ++ +SWN+M+  
Sbjct: 73  IQRRNIFSWTIMLGAYADNGHGREALGLMYGKCGHLEEAKAVFATLVERNRVSWNAMLAA 132

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
            +QNG   EA+ L+  M    ++ D  +  SV+         E G ++  +V   G  S+
Sbjct: 133 YAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEG--EHGRRIHDQVVESGFGSN 190

Query: 404 QIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
             ++ +LV  Y   G   DA  +F+ +     + T++++ A+L+A    G   E    F 
Sbjct: 191 TTLANALVSMYGSGGRVDDARYVFDGI----AEKTVVSWNAMLTAYAQNGRYGEAVDLF- 245

Query: 462 AMKWQYHIDPE 472
              W+  + P+
Sbjct: 246 ---WKMDVAPD 253


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 184/635 (28%), Positives = 310/635 (48%), Gaps = 76/635 (11%)

Query: 3   TRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           T+ D+  L   L++C    S   G   H      G   S + + N L+ MY R G+  DA
Sbjct: 145 TKPDHFTLPYALKACGELPSYRSGSAFHGLICCNG-FESNVFVCNALVAMYSRSGSLEDA 203

Query: 61  LLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGF 113
            L+FDE+ R+   +  SWN+++   +K  +   +L LF+ M     +K     + +IS  
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIV 263

Query: 114 ----AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 169
               A A L AL   K+IHS+ + NG   D+ + ++L++ Y KCG    A  V N+M+  
Sbjct: 264 NILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFK 323

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLF 225
           D    +A+++GY   GK   A  +F      +     + W+++I+GY       EAL  F
Sbjct: 324 DVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTF 383

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M   G   ++ T+ S+LSAC+SLG L  G + H ++ K            LL   +  
Sbjct: 384 QQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLK----------KCLLSLDNDF 433

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVG 343
           G   D   L         ++ N +I +YS C   + A+ IF ++P   +++++W  MI G
Sbjct: 434 GGDGDGEDL---------VVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGG 484

Query: 344 LSQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 401
            +Q G   +AL LF  M      +  + ++++ ++ ACA++SSL +G+Q+ A VT     
Sbjct: 485 YAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEY 544

Query: 402 SDQI--ISTSLVDFYCKC---------------------------------GYDALALFN 426
              +  ++  L+D Y KC                                 G +AL +F+
Sbjct: 545 ESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFD 604

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +M+  G  P  I+F  +L AC H G+V +G  +FD M+  Y +    +HY+C++DL AR+
Sbjct: 605 KMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARS 664

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G L++A   I++MP E    +W ++L  C  H +  L      +++ +  EN  +Y  +S
Sbjct: 665 GRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLIS 724

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADG 581
           +I+AT+  W+  + IR +M++  + K PGCSW  G
Sbjct: 725 NIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQG 759



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 151/333 (45%), Gaps = 41/333 (12%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + +++ Y  CG  +DA  V +R   + +V WN ++  +I       A+ +  +M R G  
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D  TL   L AC  L     G   HG  C  G   +V V +AL+  YS+ G   DA  +
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLV 206

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F E+                +   I+D            +ISWNS++    +  +P  AL
Sbjct: 207 FDEI----------------TRKGIDD------------VISWNSIVAAHVKGSNPRTAL 238

Query: 355 DLFCNMNKL------DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
           DLF  M  +      + R D  S+ +++ ACA++ +L   +++ +     G  +D  +  
Sbjct: 239 DLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCN 298

Query: 409 SLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
           +L+D Y KCG   DA+ +FN M    V    +++ A+++     G      + F  M+ +
Sbjct: 299 ALIDTYAKCGSMKDAVNVFNVMEFKDV----VSWNAMVTGYTQSGKFGAAFELFKNMR-K 353

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
            +I  ++  +S ++  +A+ G   EA++  +QM
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM 386


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 182/614 (29%), Positives = 302/614 (49%), Gaps = 93/614 (15%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP----RRNCFSWNAMIE--- 80
           + H L    LN  + +   +L+ Y    +    +L+F+ M     R + F +  +I+   
Sbjct: 52  YTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG 111

Query: 81  ----GF----MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
               GF    +KLGH   +            F  N +I  +A+  L  + + +++   I 
Sbjct: 112 NGGIGFHAHVLKLGHGSDA------------FVRNAVIDMYAR--LGPIGHARKVFDEIP 157

Query: 133 VNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
               D++  +   +++V+ Y K      A  + ++M E +    +A+++GYA    +  A
Sbjct: 158 ----DYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAA 213

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           RR FD   + S V WN+M+SGY  N    E L LF +M   G+  D +T  +V+SACSS 
Sbjct: 214 RRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSR 273

Query: 251 G---------FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           G            H KQ+           +  V +ALLD Y+K G    A ++F EL  Y
Sbjct: 274 GDPCLAASLVRTLHQKQIQ---------LNCFVRTALLDMYAKCGSIGAARRIFDELGAY 324

Query: 302 -DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            +++  N MI+ Y+  G ++ A+ +F TMP +++++WNSMI G +QNG    A++LF  M
Sbjct: 325 RNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM 384

Query: 361 -NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
                L  D+ ++ SVISAC ++ +LELG  V   +T   +        +++  Y +CG 
Sbjct: 385 ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGS 444

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+ L + M+  G++P  +TF  +L+A
Sbjct: 445 MEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 504

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL++EG+K F+++K     DP I+HY+CMVDL  R G L +A   +E+MP E   G
Sbjct: 505 CSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAG 559

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           ++ S+L     H    LG   A ++ EL+P+N+  +I LS+I+A++G W+    IR+ M+
Sbjct: 560 VYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMK 619

Query: 567 EKHVGKLPGCSWAD 580
           +  V K  G SW +
Sbjct: 620 KGGVKKTTGWSWVE 633


>gi|449531597|ref|XP_004172772.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Cucumis sativus]
          Length = 680

 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 186/609 (30%), Positives = 294/609 (48%), Gaps = 81/609 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     + +GK +     +  +   T+ + N L+ M+++CG+  DA+ +F  + R 
Sbjct: 109 VLKACGFVGDLGLGKLIQERIYEDKLQADTI-LMNSLMDMFVKCGSLNDAVEVFHNISRA 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KADLAALEYGKQIHS 129
              +WN ++ G+ K G   ++ +LF+ MP  N  SWN +I+GFA      ALE+   +H 
Sbjct: 168 TTTTWNIIVSGYSKAGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNGSQRALEFVSMMHK 227

Query: 130 H-ILVNGLDFDSVLGSSLVN---LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
             I ++   F   L  S ++     GK       + V  +  E   F LSALI  Y+NC 
Sbjct: 228 RCIKLDDFTFPCALKISALHGLLFIGK----QVHSYVTKLGYESSCFTLSALIDMYSNCN 283

Query: 186 KMNDARRVFDRTTDTSS------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            + +A ++FD+ +  ++       +WNSM+SGY+ NN D  AL L  ++  +G L D+ T
Sbjct: 284 DLIEAVKLFDQHSSFNASISDNLALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSYT 343

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
               L  C +L     G Q+HG     G   D +V S L+D Y+K               
Sbjct: 344 FGGALKVCINLLSRRVGLQLHGLIVTCGYELDYVVGSILVDLYAK--------------- 388

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                              I+DA  IF  +P K +I+W+ +I+G +Q G    A  +F  
Sbjct: 389 ----------------LANIDDALAIFHRLPRKDIIAWSGLIMGCAQIGLNWLAFSMFKG 432

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M +L   +D F +++++  C+N++SL  G+QV A     G + +    TSL+D Y KCG 
Sbjct: 433 MLELVNEIDHFVISTILKVCSNLASLRSGKQVHALCVKSGYEMEGFTITSLLDMYSKCGE 492

Query: 420 --DALALF-------------------------------NEMRNTGVKPTIITFTAILSA 446
             DAL LF                               +EM  +G+ P  ITF  +LSA
Sbjct: 493 IEDALTLFCCEQEKDIVSWTGIIVGCGQNGKAAEAVRFFHEMIRSGITPNEITFLGVLSA 552

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C + GLV+E +  F++MK  Y ++P +EHY CMVDL A  G   EA  LI  MPFE +  
Sbjct: 553 CRYAGLVEEARSIFNSMKSVYGLEPHLEHYCCMVDLLASVGLPEEAEKLIANMPFEPNQT 612

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            W ++L  C    D  L  +VA+ ++E  P +   Y+ LS+ +A+ G W   S  R+  +
Sbjct: 613 TWRTLLGACGTRNDTKLINRVADGLLEATPNDPSTYVTLSNAYASLGMWHTLSKAREASK 672

Query: 567 EKHVGKLPG 575
           +  + K PG
Sbjct: 673 KFGIKK-PG 680



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 146/575 (25%), Positives = 245/575 (42%), Gaps = 87/575 (15%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ++ +A+ L+ C T  +   G  +H +  K G LN    +AN L+ MY    N  DA  +F
Sbjct: 3   VNIIAKDLRHCATVRAFKRGNAIHAYLRKFGGLNDVF-LANNLISMYAEFFNVRDAEKVF 61

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK---NDFSWNMLISGFAKADLAAL 121
           DEM  RN  +W  M+  F   G   ++++L+N MP+    N + ++ ++   A   +  L
Sbjct: 62  DEMTDRNIVTWTTMVSAFTDGGRPYEAIRLYNDMPKSETPNGYMYSAVLK--ACGFVGDL 119

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             GK I   I  + L  D++L +SL++++ KCG  N A +V + +        + ++SGY
Sbjct: 120 GLGKLIQERIYEDKLQADTILMNSLMDMFVKCGSLNDAVEVFHNISRATTTTWNIIVSGY 179

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           +  G M +A ++F      + V WNSMI+G+ ++N    AL     M +  +  D  T  
Sbjct: 180 SKAGLMVEAEKLFHCMPHPNVVSWNSMIAGF-ADNGSQRALEFVSMMHKRCIKLDDFTFP 238

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
             L   +  G L  GKQVH +  K+G        SAL+D YS      +A KLF      
Sbjct: 239 CALKISALHGLLFIGKQVHSYVTKLGYESSCFTLSALIDMYSNCNDLIEAVKLF------ 292

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                              D    F    + +L  WNSM+ G   N     AL+L   ++
Sbjct: 293 -------------------DQHSSFNASISDNLALWNSMLSGYVINNCDQAALNLLSEIH 333

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
                +D ++    +  C N+ S  +G Q+   +   G + D ++ + LVD Y K     
Sbjct: 334 CSGALLDSYTFGGALKVCINLLSRRVGLQLHGLIVTCGYELDYVVGSILVDLYAKLANID 393

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW--FDAMKWQYHIDPEIEHY- 476
           DALA+F+ +     +  II ++ ++  C   GL      W  F   K    +  EI+H+ 
Sbjct: 394 DALAIFHRLP----RKDIIAWSGLIMGCAQIGL-----NWLAFSMFKGMLELVNEIDHFV 444

Query: 477 ------------------------------------SCMVDLFARAGCLNEAVNLI--EQ 498
                                               + ++D++++ G + +A+ L   EQ
Sbjct: 445 ISTILKVCSNLASLRSGKQVHALCVKSGYEMEGFTITSLLDMYSKCGEIEDALTLFCCEQ 504

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
              E D+  W+ I+ GC  +G      +    MI 
Sbjct: 505 ---EKDIVSWTGIIVGCGQNGKAAEAVRFFHEMIR 536



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L+ C+   S+  GKQ+H   +K G       I + LL MY +CG   DAL LF   
Sbjct: 445 ISTILKVCSNLASLRSGKQVHALCVKSGYEMEGFTITS-LLDMYSKCGEIEDALTLFCCE 503

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             ++  SW  +I G  + G   ++++ F+ M +     N+ ++  ++S    A L  +E 
Sbjct: 504 QEKDIVSWTGIIVGCGQNGKAAEAVRFFHEMIRSGITPNEITFLGVLSACRYAGL--VEE 561

Query: 124 GKQI-HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISGY 181
            + I +S   V GL+        +V+L    G    A +++ NM  EP+      L+   
Sbjct: 562 ARSIFNSMKSVYGLEPHLEHYCCMVDLLASVGLPEEAEKLIANMPFEPNQTTWRTLLGA- 620

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
             CG  ND + + +R  D       +  S Y++ +    +L ++H + +
Sbjct: 621 --CGTRNDTKLI-NRVADGLLEATPNDPSTYVTLSNAYASLGMWHTLSK 666


>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
          Length = 788

 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 188/644 (29%), Positives = 313/644 (48%), Gaps = 113/644 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L+  + +A+ L  MY +CG   DA  +FD++P RN 
Sbjct: 141 KACGALQWTWFGRGVHGYLVKAG-LHDCVFVASSLADMYGKCGVLNDARKVFDKIPERNV 199

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++L + M ++      + +S    A A++  +E GKQ H+ 
Sbjct: 200 VAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIEEGKQSHAI 259

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNGL+ D++LG+S++N Y K G    A  + + M E D    + LISGY   G ++D 
Sbjct: 260 AIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVDD- 318

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                         A+ +   MR   +  D+ TL++++SA +  
Sbjct: 319 ------------------------------AIHMCKLMRLENLRYDSVTLSTLMSAAART 348

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK+V  +  +     ++++AS  +D Y+K G   DA K+F      D IL NT++
Sbjct: 349 HNLKLGKEVQCYCIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLL 408

Query: 311 TVYSSC-----------------------------------GRIEDAKHIFRTM------ 329
             Y+                                     G++++AK +F  M      
Sbjct: 409 AAYADSGLSGEALRLFYDMQLESVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQSSGIF 468

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  LISW +M+ GL QNG   EA++    M +  LR + FS+   +SACA+++SL  G 
Sbjct: 469 PN--LISWTTMMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLASLNFGR 526

Query: 390 QVFARVTIIGLDSDQIIS--TSLVDFYCKCG-------------YDALALFNEM------ 428
            +   + I  L     +S  TSLVD Y KCG             YD L L+N M      
Sbjct: 527 SIHGYI-IRNLQHSSSVSFVTSLVDMYAKCGDINQAEKAFGSKLYDELPLYNAMISAYAL 585

Query: 429 --------------RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                          +  +KP  ITFT++LSAC H G + +    F  M  ++ + P +E
Sbjct: 586 YGNMKEAIALYRRLEDMAIKPDSITFTSLLSACSHAGDIVQAINIFTEMVSKHGMKPCLE 645

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           HY  MVDL A +G  N+A+ LI++MP++ D  M  S++          L   ++++++E 
Sbjct: 646 HYGLMVDLLASSGETNKALELIKEMPYKPDARMIQSLVASNNKQHKTELVDYLSKQLLES 705

Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +PEN+  Y+ +S+ FA  G W++   +R++M+ K + K PGCSW
Sbjct: 706 EPENSGNYVTISNAFAIEGSWDEVVKMREMMKAKGLKKKPGCSW 749



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 156/674 (23%), Positives = 275/674 (40%), Gaps = 155/674 (22%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LK G        I  +LL  Y +C     A  LF  +
Sbjct: 34  GEILQGCVYERDLCTGQQIHARILKNGDFYARNQYIETKLLIFYAKCDAIEVAQNLFSRL 93

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE---YG 124
             RN FSW A+I    ++G  E +L  F  M +      N ++    KA   AL+   +G
Sbjct: 94  RVRNVFSWAAIIGLKCRIGLCEGALTGFVEMIENGVLPDNYVVPNVCKA-CGALQWTWFG 152

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           + +H +++  GL     + SSL ++YGKCG  N A +V + + E +    +AL       
Sbjct: 153 RGVHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKVFDKIPERNVVAWNAL------- 205

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                                   + GY+ N  + EA+ L   MR+ G+     T+++ L
Sbjct: 206 ------------------------MVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCL 241

Query: 245 SACSSLGFLEHGKQVHGHA-------------------CKVGVID------------DVI 273
           SA +++  +E GKQ H  A                   CKVG+++            DV+
Sbjct: 242 SASANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVV 301

Query: 274 VASALLDTYSKRGMPSDA---CKLF----------------------------SELKVY- 301
             + L+  Y ++G+  DA   CKL                              E++ Y 
Sbjct: 302 TWNLLISGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYC 361

Query: 302 -------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                  + +L +T + +Y+ CG I DAK +F +   K LI WN+++   + +G   EAL
Sbjct: 362 IRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSGEAL 421

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LF +M    +  +  +  S+I +      ++  +++F ++   G+  + I  T++++  
Sbjct: 422 RLFYDMQLESVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGL 481

Query: 415 CK--CGYDALALFNEMRNTGVKPTIITFTAILSACDH----------------------- 449
            +  C  +A+    +M+ +G++P   + T  LSAC H                       
Sbjct: 482 VQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLASLNFGRSIHGYIIRNLQHSSS 541

Query: 450 -------------CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL- 495
                        CG + + +K F +  +      E+  Y+ M+  +A  G + EA+ L 
Sbjct: 542 VSFVTSLVDMYAKCGDINQAEKAFGSKLYD-----ELPLYNAMISAYALYGNMKEAIALY 596

Query: 496 --IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA--YIQLSSIFAT 551
             +E M  + D   ++S+L  C   GD      +   M+       C   Y  +  + A+
Sbjct: 597 RRLEDMAIKPDSITFTSLLSACSHAGDIVQAINIFTEMVSKHGMKPCLEHYGLMVDLLAS 656

Query: 552 SGEWEKS-SLIRDI 564
           SGE  K+  LI+++
Sbjct: 657 SGETNKALELIKEM 670



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 133/344 (38%), Gaps = 64/344 (18%)

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           +S    + E  EAL L  +M    V         +L  C     L  G+Q+H    K G 
Sbjct: 2   VSSLCKHGEIREALRLVKEMEFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNG- 60

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
                      D Y++                 +  +   ++  Y+ C  IE A+++F  
Sbjct: 61  -----------DFYAR-----------------NQYIETKLLIFYAKCDAIEVAQNLFSR 92

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           +  +++ SW ++I    + G    AL  F  M +  +  D + + +V  AC  +     G
Sbjct: 93  LRVRNVFSWAAIIGLKCRIGLCEGALTGFVEMIENGVLPDNYVVPNVCKACGALQWTWFG 152

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------------------- 419
             V   +   GL     +++SL D Y KCG                              
Sbjct: 153 RGVHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKVFDKIPERNVVAWNALMVGYVQN 212

Query: 420 ----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
               +A+ L ++MR  G++PT +T +  LSA  +   ++EG K   A+     ++ +   
Sbjct: 213 GMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIEEG-KQSHAIAIVNGLEMDNIL 271

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            + +++ + + G +  A  + ++M  E DV  W+ ++ G V  G
Sbjct: 272 GTSILNFYCKVGLVEYAEMIFDRM-IEKDVVTWNLLISGYVQQG 314


>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
          Length = 820

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 184/643 (28%), Positives = 302/643 (46%), Gaps = 107/643 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + ++C        G+ +H + LK G L   + +A+ L  MY +CG   DA  +FDE+P R
Sbjct: 168 VFKACGALQWSRFGRGVHGYVLKAG-LEDCVFVASSLADMYGKCGVLDDARKVFDEIPER 226

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIH 128
           N  +WNA++ G+++ G  E++++L + M +       + +S    A A++A +E G Q H
Sbjct: 227 NVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEEGTQCH 286

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           +  +VNGL+ D++LG+SL+N Y K G    A  + + M E D    + LISGY   G + 
Sbjct: 287 AIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISGYVQQGLVE 346

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           D                               A+ +   MR   +  D  TLA+++SA +
Sbjct: 347 D-------------------------------AIYMCQLMRLEKLKYDCVTLATLMSAAA 375

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
               L+ GK+V     +  +  D+++AS  +D Y+K G   DA K+F      D IL NT
Sbjct: 376 RTENLKLGKEVQCXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNT 435

Query: 309 MITVYSSCGRIEDAKHIFRTM------PN------------------------------- 331
           ++  Y+  G   +A  +F  M      PN                               
Sbjct: 436 LLAAYAESGHSGEALRLFYEMQLESVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQSSG 495

Query: 332 --KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
              +LISW +M+ G+ QNG   EA+     M +  +R + FS+   +SA AN++S   G 
Sbjct: 496 ITPNLISWTTMMNGMVQNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLASXHFGR 555

Query: 390 QVFARVTI-IGLDSDQIISTSLVDFYCKCG------------------------------ 418
            +   +   +   S   I TSLVD Y KCG                              
Sbjct: 556 SIHGYIIRNLRHSSSASIETSLVDMYAKCGDINKAERVFESKLSNELPLYNAMISAYALX 615

Query: 419 ---YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
               +A+AL+  + + G KP  ITFT++LSAC+H G + +  + F  M   + + P +EH
Sbjct: 616 GNVTEAVALYRSLEDMGXKPDSITFTSLLSACNHAGDIDQAIRVFTDMVSNHGVKPCLEH 675

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y  +VDLFA A   ++A+ L+E+MP++ D  M  S++  C       L   ++ +++E +
Sbjct: 676 YGLLVDLFASAKETDKALRLMEEMPYKPDXRMIQSLVASCNKQHKTELVDYLSRQLLETE 735

Query: 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           PE +  Y+ +S+ +A  G W++    R++M+ K + K PGCSW
Sbjct: 736 PEXSGNYVTISNAYAVEGSWDEVVKTREMMKAKGLKKKPGCSW 778



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 156/666 (23%), Positives = 276/666 (41%), Gaps = 152/666 (22%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G L +    I  +L+  Y +C +   A +LF ++
Sbjct: 63  GEILQGCVYERDLCTGKQIHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKL 122

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             RN FSW A+I    ++G  E +L  F  M +   F  N ++    KA   L    +G+
Sbjct: 123 RVRNVFSWAAIIGVKCRMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGR 182

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H ++L  GL+    + SSL ++YGK                               CG
Sbjct: 183 GVHGYVLKAGLEDCVFVASSLADMYGK-------------------------------CG 211

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++DAR+VFD   + + V WN+++ GY+ N  + EA+ L   MR++GV     T+++ LS
Sbjct: 212 VLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLS 271

Query: 246 ACSSLGFLEHGKQVHGHA-------------------CKVGVID------------DVIV 274
           A +++  +E G Q H  A                   CKVG+I+            DV+ 
Sbjct: 272 ASANMAGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVT 331

Query: 275 ASALLDTYSKRGMPSDA---------------------------------------CKLF 295
            + L+  Y ++G+  DA                                       C  F
Sbjct: 332 WNLLISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCXCF 391

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                 D +L +T + +Y+ CG I DAK +F +   K LI WN+++   +++G   EAL 
Sbjct: 392 RHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGHSGEALR 451

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  M    +  +  +   +I +    + +   +++F ++   G+  + I  T++++   
Sbjct: 452 LFYEMQLESVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQSSGITPNLISWTTMMNGMV 511

Query: 416 K--CGYDALALFNEMRNTGVKPTIITFTAILSACDH------------------------ 449
           +  C  +A+    +M+ +G++P   + T  LSA  +                        
Sbjct: 512 QNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLASXHFGRSIHGYIIRNLRHSSSA 571

Query: 450 ------------CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL-- 495
                       CG + + ++ F++      +  E+  Y+ M+  +A  G + EAV L  
Sbjct: 572 SIETSLVDMYAKCGDINKAERVFES-----KLSNELPLYNAMISAYALXGNVTEAVALYR 626

Query: 496 -IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA--YIQLSSIFATS 552
            +E M  + D   ++S+L  C   GD     +V   M+       C   Y  L  +FA++
Sbjct: 627 SLEDMGXKPDSITFTSLLSACNHAGDIDQAIRVFTDMVSNHGVKPCLEHYGLLVDLFASA 686

Query: 553 GEWEKS 558
            E +K+
Sbjct: 687 KETDKA 692



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 138/352 (39%), Gaps = 64/352 (18%)

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           SS  +   +S    N E  EAL L  +M    +         +L  C     L  GKQ+H
Sbjct: 23  SSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIH 82

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
               K G            D Y++                 +  +   ++  Y+ C  +E
Sbjct: 83  ARILKNG------------DLYAR-----------------NEYIETKLVIFYAKCDDLE 113

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            A+ +F  +  +++ SW ++I    + G    AL  F  M + ++  D F + +V  AC 
Sbjct: 114 IAEVLFSKLRVRNVFSWAAIIGVKCRMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACG 173

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------- 419
            +     G  V   V   GL+    +++SL D Y KCG                      
Sbjct: 174 ALQWSRFGRGVHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNA 233

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +A+ L ++MR  GV+PT +T +  LSA  +   V+EG +   A+    
Sbjct: 234 LMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEEGTQCH-AIAIVN 292

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            ++ +    + +++ + + G +  A  + ++M FE DV  W+ ++ G V  G
Sbjct: 293 GLELDNILGTSLLNFYCKVGLIEYAEMIFDRM-FEKDVVTWNLLISGYVQQG 343


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 164/544 (30%), Positives = 272/544 (50%), Gaps = 71/544 (13%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N F  +A+++ + K    E + ++F+VMP+++   WN +ISGF++   +  E   ++   
Sbjct: 147 NLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRN--SYFEDSIRVFVD 204

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFN--SANQVLNMMK--EPDDFCLSALISGYANCGK 186
           +L  GL FDS   ++++    +  ++      Q L   K    D + L+ LIS Y+ CGK
Sbjct: 205 MLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGK 264

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
               R +FD+      + +N+MISGY  N+E   A+ LF ++  +G   ++STL  ++  
Sbjct: 265 SCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPV 324

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
                 L+  + +   + K+G+I    V++AL                            
Sbjct: 325 YLPFNHLQLSRLIQNLSLKIGIILQPSVSTAL---------------------------- 356

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
               TVY     ++ A+ +F   P KSL SWN+MI G +QNG    A+ LF  M    L 
Sbjct: 357 ---TTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLS 412

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------- 417
            +  ++ S++SACA + +L +G+ V   +    L+S+  +ST+LVD Y KC         
Sbjct: 413 PNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472

Query: 418 ------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                   G +AL LF EM  +G+ PT +TF +IL AC H GLV
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLV 532

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            EG + F +M   Y   P  EHY+CMVD+  RAG L  A+  IE+MP E    +W ++L 
Sbjct: 533 SEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLG 592

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C+ H +  +    ++R+ +LDPEN   Y+ LS+I++T   + K++ +R +++++ + K 
Sbjct: 593 ACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKT 652

Query: 574 PGCS 577
           PGC+
Sbjct: 653 PGCT 656



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 124/276 (44%), Gaps = 38/276 (13%)

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           ++ L   + + G +   R++F++ +     ++N +I G+  N     ++ L+  +R+   
Sbjct: 49  ITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTN 108

Query: 234 LE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           L  D  T A  +SA S L     G  +H H+   GV  ++ V SA++D Y K      A 
Sbjct: 109 LRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELAR 168

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
           K+F  +   DT+L NTMI+ +S     ED+  +F  M          + VGLS       
Sbjct: 169 KVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDM----------LDVGLS------- 211

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
                          D  +LA+V++A A +    LG  +    +  GL SD  + T L+ 
Sbjct: 212 --------------FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLIS 257

Query: 413 FYCKCGYD--ALALFNEMRNTGVKPTIITFTAILSA 446
            Y KCG       LF+++     +P +I++ A++S 
Sbjct: 258 LYSKCGKSCKGRILFDQID----QPDLISYNAMISG 289



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 13/217 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++ +GK +H   +K   L S + ++  L+ MY +CG+  +A  LFD M  +
Sbjct: 421 ILSACAQLGALSIGKWVH-GLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK 479

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGKQIH 128
           N  +WNAMI G+   GH +++L+LF  M Q          L   +A +    +  G +I 
Sbjct: 480 NVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIF 539

Query: 129 SHILVNGLDFD--SVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG---YA 182
            H + N   F   S   + +V++ G+ G   +A + +  M  EP      AL+     + 
Sbjct: 540 -HSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHK 598

Query: 183 NCGKMNDA-RRVFDRTTDTSSVMWNSMISGYISNNED 218
           N    N A +R+F    D  +V +  ++S   S + +
Sbjct: 599 NTEMANVASKRLFQ--LDPENVGYYVLLSNIYSTDRN 633


>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
 gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
          Length = 531

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 177/566 (31%), Positives = 277/566 (48%), Gaps = 77/566 (13%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFS 105
           MY +CG+  +A  +FD +  R+  SW +MI  +   G  +++L L+  M     Q +  +
Sbjct: 1   MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSIT 60

Query: 106 WNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 165
           +   +    K     L  GK IH+ I+ + ++ D V GS+L+N+Y +CGD +SA Q    
Sbjct: 61  FTSALLACTK-----LADGKAIHARIVSSNMESDFV-GSALINMYARCGDVSSARQAFEK 114

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
           ++     C ++L++ Y   G                                  EAL L+
Sbjct: 115 IQNKHVVCWTSLMTAYVQTGHYR-------------------------------EALDLY 143

Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
            +M   GV  D  T  + L AC+SLG L+ GK +H    + G    ++V +ALL  Y+K 
Sbjct: 144 GRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECG-FQSLVVHTALLTMYAKC 202

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           G    A  +F+ L   +  + N ++T+Y+ CG +E AK  F     K L+SWN+MI   +
Sbjct: 203 GELDAARAVFNRL-ASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYA 261

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQ 404
           Q+G   EALDL+  M    +  D+ ++AS +SACA   SL+LG ++ +RV       S  
Sbjct: 262 QHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSL 321

Query: 405 IISTSLVDFYCKCGY---------------------------------DALALFNEMRNT 431
           ++ T+LV+ Y +CG                                    L L+ EM   
Sbjct: 322 MVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLH 381

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
           G++P  ITFT+IL  C H GL+  G + F  M+ ++ + P  EH+ CMVDL  R+G L +
Sbjct: 382 GIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRD 441

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551
           A  L+E MP++ D   W ++L  C  H D    ++ A R+ ELDPEN   Y  LSSIF  
Sbjct: 442 AEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLLSSIFTA 501

Query: 552 SGEWEKSSLIRDIMREKHVGKLPGCS 577
           +G  +++  ++  M+E  + K PG S
Sbjct: 502 AGLPQEALEVQLSMKEMGLKKPPGQS 527



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/484 (24%), Positives = 217/484 (44%), Gaps = 58/484 (11%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK +H   +   + +    + + L+ MY RCG+ + A   F+++  ++   W +++  ++
Sbjct: 74  GKAIHARIVSSNMESDF--VGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYV 131

Query: 84  KLGHKEKSLQLFNVMPQKNDFS--WNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS- 140
           + GH  ++L L+  M  +   +     + +  A A L AL+ GK I  H+ V+   F S 
Sbjct: 132 QTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAI--HLRVSECGFQSL 189

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
           V+ ++L+ +Y KCG+ ++A  V N +   +    +AL++ YA CG +  A+  F+ +   
Sbjct: 190 VVHTALLTMYAKCGELDAARAVFNRLA-SNVAVQNALVTMYAKCGSLELAKSAFEASGRK 248

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             V WN+MI  Y  +    EAL L+  M   GVL D  T+AS LSAC+  G L+ G+++H
Sbjct: 249 DLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIH 308

Query: 261 GHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
               K       ++V +AL++ Y + G    A  +F +                      
Sbjct: 309 SRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFED---------------------- 346

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
                    M  + ++SW +M    +Q G   + LDL+  M    +R ++ +  S++  C
Sbjct: 347 ---------MGQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGC 397

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTS-----LVDFYCKCG--YDALALFNEMRNTG 432
           ++   L  G + F  +        +++        +VD   + G   DA AL   M    
Sbjct: 398 SHAGLLARGVECFLEMQ----SEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMP--- 450

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNE 491
            +P  + +  +L +C         ++   A +    +DPE    YS +  +F  AG   E
Sbjct: 451 YQPDSVAWLTVLGSCKTHSDADTAKR---AARRVKELDPENTSLYSLLSSIFTAAGLPQE 507

Query: 492 AVNL 495
           A+ +
Sbjct: 508 ALEV 511



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 143/347 (41%), Gaps = 57/347 (16%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           L S + + N L+ MY +CG+   A   F+   R++  SWNAMI  + + G   ++L L+ 
Sbjct: 215 LASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQ 274

Query: 97  VMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSHILVNGLDFDSVL--GSSLVNLYGK 152
            M  +      + I+    A A   +L+ G++IHS +L N   F S L   ++LVN+YG+
Sbjct: 275 TMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQ-SFQSSLMVQTALVNMYGR 333

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
           CG   +A  +   M + D                                + W +M S Y
Sbjct: 334 CGRLETARSMFEDMGQRD-------------------------------VLSWTAMTSVY 362

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK----QVHGHACKVGV 268
                  + L L+ +M  +G+  +  T  S+L  CS  G L  G     ++      V +
Sbjct: 363 AQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPI 422

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHIFR 327
            +  +    ++D   + G   DA  L   +    D++     +TV  SC    DA    R
Sbjct: 423 REHFLC---MVDLLGRSGRLRDAEALVESMPYQPDSV---AWLTVLGSCKTHSDADTAKR 476

Query: 328 TM--------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                      N SL S  S I   +  G P EAL++  +M ++ L+
Sbjct: 477 AARRVKELDPENTSLYSLLSSI--FTAAGLPQEALEVQLSMKEMGLK 521



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 39/249 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L +C    S+ +G+++H   LK     S+L +   L+ MY RCG    A  +F++M
Sbjct: 288 IASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDM 347

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAA--- 120
            +R+  SW AM   + + GH ++ L L+  M     + N+ ++  ++ G + A L A   
Sbjct: 348 GQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGV 407

Query: 121 ---LEYGKQ-----IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDD 171
              LE   +     I  H L             +V+L G+ G    A  ++  M  +PD 
Sbjct: 408 ECFLEMQSEHEVVPIREHFLC------------MVDLLGRSGRLRDAEALVESMPYQPDS 455

Query: 172 FCLSALISGYANCGKMND-------ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
               A ++   +C   +D       ARRV +   + +S +++ + S + +     EAL +
Sbjct: 456 V---AWLTVLGSCKTHSDADTAKRAARRVKELDPENTS-LYSLLSSIFTAAGLPQEALEV 511

Query: 225 FHKMRRNGV 233
              M+  G+
Sbjct: 512 QLSMKEMGL 520


>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
          Length = 830

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 188/643 (29%), Positives = 301/643 (46%), Gaps = 111/643 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L   + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 181 KACGALQWSRFGRGVHGYVVKAG-LEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 239

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++L + M +       + +S    A A++  +  GKQ H+ 
Sbjct: 240 VAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQSHAI 299

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            ++NGL+ D++LG+SL+N Y K G    A  + + M + D    + LISGY   G + D 
Sbjct: 300 AILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQQGLVED- 358

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                         A+ +   MR   +  D  TL++++SA +  
Sbjct: 359 ------------------------------AIYMCQLMRLENLKYDCVTLSTLMSAAART 388

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK+V  +  +  +  D+++AS  +D Y+K G   DA K+F      D IL NT++
Sbjct: 389 KNLKFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLL 448

Query: 311 TVYSSC-----------------------------------GRIEDAKHIFRTM------ 329
             Y+                                     G + +AK +F  M      
Sbjct: 449 AAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGIS 508

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  LISW +M+ G+ QNG   EA+     M    LR + FS+   +SA AN++SL  G 
Sbjct: 509 PN--LISWTTMMNGMVQNGCSEEAILFLRKMQDSGLRPNAFSITVALSASANLASLHFGR 566

Query: 390 QVFARVTIIGLDSDQI-ISTSLVDFYCKCG-------------YDALALFNEM------- 428
            +   +      S  + I TSLVD Y KCG             Y  L L+N M       
Sbjct: 567 SIHGYIVRNLQHSSSVSIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALY 626

Query: 429 -------------RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
                         + G KP  ITFT++LSAC+H G + +  + F  M  ++ + P +EH
Sbjct: 627 GNVKEAITLYRSLEDMGNKPDNITFTSLLSACNHVGDINQAIEIFTDMVSKHGVKPCLEH 686

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y  MVDL A AG  + A+ LIE+MP++ D  M  S++  C       L    +  ++E +
Sbjct: 687 YGLMVDLLASAGETDRALKLIEEMPYKPDARMIQSLVASCNKQHKSELVEYFSRHLLESE 746

Query: 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           PEN+  Y+ +S+ +A  G W++   +RD+M+ K + K PGCSW
Sbjct: 747 PENSGNYVTISNAYAVEGSWDEVVKMRDMMKAKGLTKNPGCSW 789



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 241/520 (46%), Gaps = 77/520 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G        I  +L+  Y +C     A +LF ++
Sbjct: 74  GEILQGCVYERDLCTGKQIHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKL 133

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             RN FSW A+I    ++G  E +L  F  M +   F  N ++    KA   L    +G+
Sbjct: 134 RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGR 193

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H +++  GL+    + SSL ++YGK                               CG
Sbjct: 194 GVHGYVVKAGLEDCVFVASSLADMYGK-------------------------------CG 222

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++DAR+VFD   + + V WN+++ GY+ N  + EA+ L   MR++GV     T+++ LS
Sbjct: 223 VLDDARKVFDEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLS 282

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A +++G +  GKQ H  A   G+  D I+ ++LL+ Y K G+   A  +F  +   D + 
Sbjct: 283 ASANMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVT 342

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD- 364
            N +I+ Y   G +EDA ++                                C + +L+ 
Sbjct: 343 WNLLISGYVQQGLVEDAIYM--------------------------------CQLMRLEN 370

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDAL 422
           L+ D  +L++++SA A   +L+ G++V        L+SD ++++  +D Y KCG   DA 
Sbjct: 371 LKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAK 430

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            +F    ++ V+  +I +  +L+A    GL  E  + F  M+ +  + P +  ++ ++  
Sbjct: 431 KVF----DSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQLE-SVPPNVITWNLIILS 485

Query: 483 FARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHG 519
             R G +NEA  +  QM       ++  W++++ G V +G
Sbjct: 486 LLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNG 525



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 140/358 (39%), Gaps = 64/358 (17%)

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           D+  + SS  +   +S    N E  EAL L  KM    +         +L  C     L 
Sbjct: 28  DQALNPSSTSYFHRVSSLCKNGEIKEALSLVTKMDFRNLRIGPEIYGEILQGCVYERDLC 87

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            GKQ+H    K G   D    +  ++T                           ++  Y+
Sbjct: 88  TGKQIHARILKNG---DFYAGNEYIET--------------------------KLVIFYA 118

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            C  +E A+ +F  +  +++ SW ++I    + G    AL  F  M + ++  D F + +
Sbjct: 119 KCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPN 178

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------- 419
           V  AC  +     G  V   V   GL+    +++SL D Y KCG                
Sbjct: 179 VCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERN 238

Query: 420 ------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                             +A+ L ++MR  GV+P+ +T +  LSA  + G V EG K   
Sbjct: 239 VVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEG-KQSH 297

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           A+     ++ +    + +++ + + G +  A  + ++M F+ DV  W+ ++ G V  G
Sbjct: 298 AIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRM-FDKDVVTWNLLISGYVQQG 354



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 39/234 (16%)

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           +KH      N S  S+   +  L +NG   EAL L   M+  +LR+       ++  C  
Sbjct: 23  SKHHDDQALNPSSTSYFHRVSSLCKNGEIKEALSLVTKMDFRNLRIGPEIYGEILQGCVY 82

Query: 382 ISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGYDAL----ALFNEM--RNTGV 433
              L  G+Q+ AR+   G     ++ I T LV FY KC  DAL     LF+++  RN   
Sbjct: 83  ERDLCTGKQIHARILKNGDFYAGNEYIETKLVIFYAKC--DALEIAQVLFSKLRVRNVFS 140

Query: 434 KPTIITFTAILSACDHC--GLVK--EGQKWFD------------AMKWQ--------YHI 469
              II     +  C+    G V+  E + + D            A++W         Y +
Sbjct: 141 WAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVV 200

Query: 470 DPEIEH----YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
              +E      S + D++ + G L++A  + +++P E +V  W+++L G V +G
Sbjct: 201 KAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIP-ERNVVAWNALLVGYVQNG 253


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/386 (36%), Positives = 221/386 (57%), Gaps = 33/386 (8%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M   GV  +  TL++V+ AC+S+  LE GKQ H +  K+G   DV+V +AL+  Y++ G 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             DA  +F ++    T   N MIT ++    ++ A  +F  M  + ++SW ++I G +QN
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
           G   E+L++F  M K  ++ D+F + SV+SACA++++LELG Q  A V   G   D ++ 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 408 TSLVDFYCKCGY---------------------------------DALALFNEMRNTGVK 434
           ++LVD Y K G                                  DA+ LF +M   G+K
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P  I+F  +LSAC H GLV EG+ +F+ M   Y I P++ HY+CM+DL  RAGCL+EA N
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
            I  MP E DV +W ++L  C  HG+  L +++AE ++ ++ + A  Y+ LS+I+A +G+
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 555 WEKSSLIRDIMREKHVGKLPGCSWAD 580
           W+ ++ +R +M+++ V K PG SW +
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIE 386



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 163/353 (46%), Gaps = 67/353 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++++C +  S+  GKQ H + +K G   S + +   L+ MY RCG+  DA  +FD+M
Sbjct: 13  LSTVVKACASIASLEQGKQAHNYIIKMG-FESDVVVQTALVHMYARCGSLEDAGHVFDKM 71

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
             R+  +WNAMI G  +    +K+L+LF  M +++  SW  +I+G+A+            
Sbjct: 72  SERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFN 131

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                ADLAALE G+Q H++++ +G   D V+GS+LV++Y K G
Sbjct: 132 QMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSG 191

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
               A QV + M + ++   +++I+G A  G+ ND                         
Sbjct: 192 SMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGND------------------------- 226

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVI 273
                 A+LLF +M + G+  +  +   VLSACS  G +  G+       +  G++ DV 
Sbjct: 227 ------AVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVS 280

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHI 325
             + ++D   + G   +A    + + V  D  +   ++      G  E AK I
Sbjct: 281 HYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRI 333


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 181/566 (31%), Positives = 270/566 (47%), Gaps = 114/566 (20%)

Query: 60   ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGF 113
            A   +  + + N  SWN++I    + G   ++L+ F+      ++P ++ F    + S  
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCT-IKSCS 1153

Query: 114  AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
            A  DL +   G+  H    V G                                E D F 
Sbjct: 1154 ALCDLVS---GRMSHQQAFVFGF-------------------------------ETDLFV 1179

Query: 174  LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--- 230
             SALI  Y+ CG++ DAR +FD     + V W SMI+GY+ N +   ALLLF        
Sbjct: 1180 SSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEET 1239

Query: 231  -----NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
                 N V  D+  + SVLSACS +      + VHG   K G    + V + L+D Y+K 
Sbjct: 1240 EVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAK- 1298

Query: 286  GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                                          CG+   +K +F  M  K  ISWNSMI   +
Sbjct: 1299 ------------------------------CGQPLVSKKVFDWMEEKDDISWNSMIAVYA 1328

Query: 346  QNGSPIEALDLFCNMNK-LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
            Q+G   EAL++F  M + + +R +  +L++V+ ACA+  +L  G+ +  +V  + L+ + 
Sbjct: 1329 QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNV 1388

Query: 405  IISTSLVDFYCKCGY---------------------------------DALALFNEMRNT 431
             + TS++D YCKCG                                  +AL +F +M   
Sbjct: 1389 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRA 1448

Query: 432  GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
            GVKP  ITF ++L+AC H GLV+EG  WF+AMK +Y I+P IEHY CMVDLF RAGCLNE
Sbjct: 1449 GVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNE 1508

Query: 492  AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551
            A NLI++M  + D  +W S+L  C  H +  LG   A+++ ELDP+N   Y+ LS+++A 
Sbjct: 1509 AYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYAD 1568

Query: 552  SGEWEKSSLIRDIMREKHVGKLPGCS 577
            +G W     +R +M+ + + K PG S
Sbjct: 1569 AGRWADVERMRMLMKNRQLVKPPGFS 1594



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 121/408 (29%), Positives = 189/408 (46%), Gaps = 64/408 (15%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +QIH+ I+ +GL  D +L   L++LY   G    A  +   ++ P  F            
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTF------------ 91

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                               WN +I     N    +AL+L+  M   G+  D  T   V+
Sbjct: 92  -------------------TWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVI 132

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC++   ++ GK VHG   K G   DV V + L+D Y K G    A K+F +++V + +
Sbjct: 133 KACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVV 192

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
              T+I+   SCG +++A+ IF  +P+K+++SW +MI G  +N  P EAL+LF  M   +
Sbjct: 193 SWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN 252

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------- 417
           +  +++++ S+I AC  +  L LG  +        ++    + T+L+D Y KC       
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAI 312

Query: 418 --------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                     G +AL LF+EM    VKP  ITF  +L AC H  
Sbjct: 313 EVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIK 372

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
            VKEG  +F  M   Y I P  EHY CM +L+AR+  L+EA    +++
Sbjct: 373 NVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 41/390 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ+C     +   +Q+H   ++ G+ N  L +  +L+ +Y   G    A+LLF ++   
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQL-LTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
             F+WN +I      G  E++L L+  M       + F++  +I   A  +  +++ GK 
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIK--ACTNFLSIDLGKV 146

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  ++  G   D  + ++L++ Y KCG    A +V   M+  +    + +ISG  +CG 
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +ARR+FD     + V W +MI+GYI N +  EAL LF +M+   +  +  T+ S++ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ +G L  G+ +H +A K  +   V + +AL+D YSK G   DA +             
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIE------------- 313

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                             +F TMP KSL +WNSMI  L  +G   EAL+LF  M +++++
Sbjct: 314 ------------------VFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355

Query: 367 MDKFSLASVISACANISSLELGEQVFARVT 396
            D  +   V+ AC +I +++ G   F R+T
Sbjct: 356 PDAITFIGVLCACVHIKNVKEGCAYFTRMT 385



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 223/491 (45%), Gaps = 84/491 (17%)

Query: 12   LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
            ++SC+    +  G+  H      G   + L +++ L+ MY +CG   DA  LFDE+P RN
Sbjct: 1149 IKSCSALCDLVSGRMSHQQAFVFG-FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 1207

Query: 72   CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------NDFSWNMLI-----SGFAKADLA 119
              SW +MI G+++    + +L LF    ++       N+   + ++     S  ++    
Sbjct: 1208 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 1267

Query: 120  ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
             +  G  +H  ++  G D    +G++L++ Y KCG    + +V + M+E DD   +++I+
Sbjct: 1268 GITEG--VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIA 1325

Query: 180  GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDAS 238
             YA  G                       +SG        EAL +FH M R+ GV  +A 
Sbjct: 1326 VYAQSG-----------------------LSG--------EALEVFHGMVRHVGVRYNAV 1354

Query: 239  TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
            TL++VL AC+  G L  GK +H    K+ +  +V V ++++D Y K              
Sbjct: 1355 TLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCK-------------- 1400

Query: 299  KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             CGR+E AK  F  M  K++ SW +M+ G   +G   EALD+F 
Sbjct: 1401 -----------------CGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFY 1443

Query: 359  NMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKC 417
             M +  ++ +  +  SV++AC++   +E G   F A      ++        +VD + + 
Sbjct: 1444 KMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRA 1503

Query: 418  GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHY 476
            G    A +N ++   +KP  + + ++L AC     V  G+    A +  + +DP+   +Y
Sbjct: 1504 GCLNEA-YNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEI---AAQKLFELDPDNCGYY 1559

Query: 477  SCMVDLFARAG 487
              + +L+A AG
Sbjct: 1560 VLLSNLYADAG 1570



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L+ +L +C    ++  GK +H   +K   L   + +   ++ MY +CG    A   FD M
Sbjct: 1356 LSAVLLACAHAGALRAGKCIHDQVIKMD-LEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM 1414

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAKADLAALE---- 122
              +N  SW AM+ G+   G  +++L +F  M +     ++   +S  A    A L     
Sbjct: 1415 KEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGW 1474

Query: 123  --YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              +    H + +  G++        +V+L+G+ G  N A  ++  MK   DF +   + G
Sbjct: 1475 HWFNAMKHKYDIEPGIEHYGC----MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLG 1530

Query: 181  YANCGKMND-----ARRVFDRTTD 199
                 K  D     A+++F+   D
Sbjct: 1531 ACRIHKNVDLGEIAAQKLFELDPD 1554


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 169/557 (30%), Positives = 271/557 (48%), Gaps = 72/557 (12%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAK 115
           A+ +F+ +   N   WN M  G         +L+L+  M       N +++  L+   AK
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
             L A + G QIH H+L  G + D  + +SL+++Y +      A++V +     D    +
Sbjct: 76  --LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYT 133

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           AL++GYA+ G +  AR +FD       V WN+MISGY+      EAL LF +M +  V  
Sbjct: 134 ALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRP 193

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D ST+ +V+SA +  G +E G+QVH      G   ++ + +AL+D               
Sbjct: 194 DESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALID--------------- 238

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                            YS CG +E A  +F  +  K +ISWN +I G +      EAL 
Sbjct: 239 ----------------FYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALL 282

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDF 413
           LF  M +     +  ++ S++ ACA++ ++++G    V+    + G+ +   + TSL+D 
Sbjct: 283 LFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDM 342

Query: 414 YCKCG---------------------------------YDALALFNEMRNTGVKPTIITF 440
           Y KCG                                   A  +F+ MR   +KP  ITF
Sbjct: 343 YSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITF 402

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H G++  G+  F +M   Y I P++EHY CM+DL   +G   EA  +I  M 
Sbjct: 403 VGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMT 462

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E D  +W S+L+ C  HG+  LG K A+ + +++P N  +Y+ LS+I+AT+G W + + 
Sbjct: 463 MEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVAR 522

Query: 561 IRDIMREKHVGKLPGCS 577
           IR ++ +K + K+PGCS
Sbjct: 523 IRGLLNDKGMKKVPGCS 539



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 236/501 (47%), Gaps = 62/501 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G Q+H H LK G     L +   L+ MY++     DA  +FD    R
Sbjct: 69  LLKSCAKLKASKEGLQIHGHVLKLG-YELDLYVHTSLISMYVQNERLEDAHKVFDRSSHR 127

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYGKQIH 128
           +  S+ A++ G+   G+ E +  +F+ +P K+  SWN +ISG+ +      ALE  K+  
Sbjct: 128 DVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKE-- 185

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANC 184
             ++   +  D     ++++   + G      QV + + +     +   ++ALI  Y+ C
Sbjct: 186 --MMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKC 243

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G+M  A  +F   +    + WN +I GY   N   EALLLF +M R+G   +  T+ S+L
Sbjct: 244 GEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSIL 303

Query: 245 SACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
            AC+ LG ++ G+ +H +  K   GV +   + ++L+D YSK                  
Sbjct: 304 HACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSK------------------ 345

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG IE A  +F +M +KSL +WN+MI G + +G    A D+F  M K
Sbjct: 346 -------------CGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRK 392

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDAL 422
            +++ D  +   ++SAC++   L+LG  +F  +T      +  I+  L  + C    D L
Sbjct: 393 NEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMT-----HNYKITPKLEHYGCMI--DLL 445

Query: 423 ---ALFNE----MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE- 474
               LF E    +    ++P  + + ++L AC   G V+ G+K+   +   + I+P    
Sbjct: 446 GHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNL---FKIEPNNPG 502

Query: 475 HYSCMVDLFARAGCLNEAVNL 495
            Y  + +++A AG  NE   +
Sbjct: 503 SYVLLSNIYATAGRWNEVARI 523


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 164/544 (30%), Positives = 272/544 (50%), Gaps = 71/544 (13%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N F  +A+++ + K    E + ++F+VMP+++   WN +ISGF++   +  E   ++   
Sbjct: 147 NLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRN--SYFEDSIRVFVD 204

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFN--SANQVLNMMK--EPDDFCLSALISGYANCGK 186
           +L  GL FDS   ++++    +  ++      Q L   K    D + L+ LIS Y+ CGK
Sbjct: 205 MLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGK 264

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
               R +FD+      + +N+MISGY  N+E   A+ LF ++  +G   ++STL  ++  
Sbjct: 265 SCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPV 324

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
                 L+  + +   + K+G+I    V++AL                            
Sbjct: 325 YLPFNHLQLSRLIQNLSLKIGIILQPSVSTAL---------------------------- 356

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
               TVY     ++ A+ +F   P KSL SWN+MI G +QNG    A+ LF  M    L 
Sbjct: 357 ---TTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLS 412

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------- 417
            +  ++ S++SACA + +L +G+ V   +    L+S+  +ST+LVD Y KC         
Sbjct: 413 PNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472

Query: 418 ------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                   G +AL LF EM  +G+ PT +TF +IL AC H GLV
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLV 532

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            EG + F +M   Y   P  EHY+CMVD+  RAG L  A+  IE+MP E    +W ++L 
Sbjct: 533 SEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLG 592

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C+ H +  +    ++R+ +LDPEN   Y+ LS+I++T   + K++ +R +++++ + K 
Sbjct: 593 ACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKT 652

Query: 574 PGCS 577
           PGC+
Sbjct: 653 PGCT 656



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 124/276 (44%), Gaps = 38/276 (13%)

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           ++ L   + + G +   R++F++ +     ++N +I G+  N     ++ L+  +R+   
Sbjct: 49  ITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTN 108

Query: 234 LE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           L  D  T A  +SA S L     G  +H H+   GV  ++ V SA++D Y K      A 
Sbjct: 109 LRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELAR 168

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
           K+F  +   DT+L NTMI+ +S     ED+  +F  M          + VGLS       
Sbjct: 169 KVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDM----------LDVGLS------- 211

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
                          D  +LA+V++A A +    LG  +    +  GL SD  + T L+ 
Sbjct: 212 --------------FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLIS 257

Query: 413 FYCKCGYD--ALALFNEMRNTGVKPTIITFTAILSA 446
            Y KCG       LF+++     +P +I++ A++S 
Sbjct: 258 LYSKCGKSCKGRILFDQID----QPDLISYNAMISG 289



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 13/217 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++ +GK +H   +K   L S + ++  L+ MY +CG+  +A  LFD M  +
Sbjct: 421 ILSACAQLGALSIGKWVH-GLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK 479

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGKQIH 128
           N  +WNAMI G+   GH +++L+LF  M Q          L   +A +    +  G +I 
Sbjct: 480 NVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIF 539

Query: 129 SHILVNGLDFD--SVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG---YA 182
            H + N   F   S   + +V++ G+ G   +A + +  M  EP      AL+     + 
Sbjct: 540 -HSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHK 598

Query: 183 NCGKMNDA-RRVFDRTTDTSSVMWNSMISGYISNNED 218
           N    N A +R+F    D  +V +  ++S   S + +
Sbjct: 599 NTEMANVASKRLFQ--LDPENVGYYVLLSNIYSTDRN 633


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 186/683 (27%), Positives = 319/683 (46%), Gaps = 145/683 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +  +   ++ G  +H   +K+G L+  + + + L+ MY +C     A  +F+ +
Sbjct: 312 LGSVLSAIASLSMLNYGSMVHAQAIKEG-LDDNVYVGSALVNMYAKCSKMDAAKQVFNSL 370

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             RN   WNAM+ GF + G  ++ ++ F+ M    PQ ++F++  + S  A A L  L++
Sbjct: 371 GERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFS--ACASLHYLDF 428

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+H+ ++ N   F S L                             F  +AL+  YA 
Sbjct: 429 GGQLHTVMIKN--KFTSNL-----------------------------FVANALVDMYAK 457

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G + +AR+ F+      +V WN++I GY+    + EA  +F +M  NGVL D  +LAS+
Sbjct: 458 SGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASI 517

Query: 244 LSACSSLGFLEHGKQVHGHACKVG----------VID---------------------DV 272
           +SAC+++   + G+Q H    KVG          +ID                     +V
Sbjct: 518 VSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNV 577

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYD-----------------TILLN-------- 307
           +  +AL+  Y+   +  +A  LF E+++                     +LN        
Sbjct: 578 VSINALIAGYTMSHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQ 636

Query: 308 ---------------TMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPI 351
                          +++ +Y +  R  D++ +F  +   K L+ W ++I G +Q     
Sbjct: 637 VMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHE 696

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           +AL  + +M   ++  D+ + ASV+ ACA +SSL+ G++V + +   G + D+I  +SL+
Sbjct: 697 KALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLI 756

Query: 412 DFYCKCG----------------------------------YDALALFNEMRNTGVKPTI 437
           D Y KCG                                   +AL +F +M    + P  
Sbjct: 757 DMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDE 816

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           +TF  +LSAC H G V EG+K FD M   Y + P ++H  CMVD+  R G LNEA   I 
Sbjct: 817 VTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFIN 876

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
           ++  +AD  +WS++L  C  HGD+  G++ A +++EL P+++ +Y+ LS ++A S  W  
Sbjct: 877 KLGCKADPMLWSTLLGACRKHGDEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSG 936

Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
           +  +R  M+ K V KLPG SW +
Sbjct: 937 ADSLRREMKLKGVKKLPGYSWIE 959



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 147/598 (24%), Positives = 269/598 (44%), Gaps = 113/598 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ+ +T   IH  K L +    KG+L       N ++ +Y++CGN   A   F  + ++
Sbjct: 53  VLQALSTAKVIH-SKSLKIGVGLKGLL------GNVIVDLYVKCGNVDFAQKAFSRLEKK 105

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           + F+WN+++  ++  G     +Q F  M     + N+F++ M++S  A + L  + YGKQ
Sbjct: 106 DVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLS--ACSGLQDINYGKQ 163

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN-------------------------- 160
           +H  +   G  F S     L+++Y KC +   A                           
Sbjct: 164 VHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGF 223

Query: 161 -----QVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
                +V + M+     PD   L  +I+ Y   G++ DAR++F +  + + V WN MISG
Sbjct: 224 PMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLADARKLFTQIPNPNVVAWNVMISG 283

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           +       EA+  F ++++ G+    S+L SVLSA +SL  L +G  VH  A K G+ D+
Sbjct: 284 HAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDN 343

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
           V V SAL++ Y+K                               C +++ AK +F ++  
Sbjct: 344 VYVGSALVNMYAK-------------------------------CSKMDAAKQVFNSLGE 372

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           ++++ WN+M+ G +QNG   E ++ F  M +   + D+F+  S+ SACA++  L+ G Q+
Sbjct: 373 RNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQL 432

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCGY-------------------------------- 419
              +      S+  ++ +LVD Y K G                                 
Sbjct: 433 HTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYN 492

Query: 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
            +A  +F  M + GV P  ++  +I+SAC +    K+GQ+    +  +  +D      S 
Sbjct: 493 DEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQC-HCLLVKVGLDTSTCAGSS 551

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
           ++D++ + G +  A ++   MP+   V + + I    ++H ++ +      +M+ L P
Sbjct: 552 LIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMSHLEEAIHLFQEIQMVGLKP 609



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 154/619 (24%), Positives = 254/619 (41%), Gaps = 167/619 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C+    I+ GKQ+H    K G    +      L+ MY +C N  DA L+FD  
Sbjct: 145 FAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSF-CQGGLIDMYAKCRNLRDARLVFDGA 203

Query: 68  PRRNCFSWNAMIEGFMK-----------------------------------LGHKEKSL 92
              +  SW  +I G+++                                   LG    + 
Sbjct: 204 LNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLADAR 263

Query: 93  QLFNVMPQKNDFSWNMLISGFAK---------------------------------ADLA 119
           +LF  +P  N  +WN++ISG AK                                 A L+
Sbjct: 264 KLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLS 323

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L YG  +H+  +  GLD +  +GS+LVN+Y K                           
Sbjct: 324 MLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAK--------------------------- 356

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               C KM+ A++VF+   + + V+WN+M+ G+  N    E +  F  M+R+G   D  T
Sbjct: 357 ----CSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFT 412

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             S+ SAC+SL +L+ G Q+H    K     ++ VA+AL+D Y+K G   +A K F  +K
Sbjct: 413 FTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMK 472

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           ++D +                               SWN++IVG  Q     EA  +F  
Sbjct: 473 IHDNV-------------------------------SWNAIIVGYVQEEYNDEAFFMFRR 501

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M    +  D+ SLAS++SACAN+   + G+Q    +  +GLD+     +SL+D Y KCG 
Sbjct: 502 MVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGV 561

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A+ LF E++  G+KPT +TF  +L  C
Sbjct: 562 VLAARDVFYSMPYRNVVSINALIAGYTMSHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGC 621

Query: 448 DHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           D   ++  G++     MKW +    E+   S +  ++  +    ++  L  ++ +   + 
Sbjct: 622 DGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLC-MYMNSQRFADSETLFSELQYPKGLV 680

Query: 507 MWSSILRGCVA--HGDKGL 523
           +W++++ G     H +K L
Sbjct: 681 VWTALISGYAQQNHHEKAL 699



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 208/470 (44%), Gaps = 101/470 (21%)

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           KA L AL   K IHS  L  G+    +LG+ +V+LY KCG+ + A +  + +++ D F  
Sbjct: 51  KAVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAW 110

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           ++++S Y + G       +F     +   MWN                        +GV 
Sbjct: 111 NSVLSMYLDHG-------LFATVVQSFVCMWN------------------------HGVR 139

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHA----------CKVGVID-------------- 270
            +  T A VLSACS L  + +GKQVH             C+ G+ID              
Sbjct: 140 PNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLV 199

Query: 271 -------DVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRI 319
                  D +  + L+  Y + G P +A K+F +++    V D I L T+I  Y + GR+
Sbjct: 200 FDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRL 259

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
            DA+ +F  +PN ++++WN MI G ++ G   EA+  F  + K  L+  + SL SV+SA 
Sbjct: 260 ADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAI 319

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------------------- 417
           A++S L  G  V A+    GLD +  + ++LV+ Y KC                      
Sbjct: 320 ASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWN 379

Query: 418 -----------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        + +  F+ M+  G +P   TFT+I SAC     +  G +    M  +
Sbjct: 380 AMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVM-IK 438

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
                 +   + +VD++A++G L EA    E M    +V  W++I+ G V
Sbjct: 439 NKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVS-WNAIIVGYV 487


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 186/663 (28%), Positives = 315/663 (47%), Gaps = 139/663 (20%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           VG+Q+H   +K G+++  L + N L+ MY + GN  D   +FDEM  R+  SWN+++ G+
Sbjct: 120 VGEQVHCQCVKCGLVHH-LSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGY 178

Query: 83  MKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
                 ++  +LF +M     + + ++ + +I+  A A+  A+  G QIH+ ++  G + 
Sbjct: 179 SWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIA--ALANQGAVAIGMQIHALVVKLGFET 236

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           + ++ +SL+++  K G                                + DAR VFD   
Sbjct: 237 ERLVCNSLISMLSKSG-------------------------------MLRDARVVFDNME 265

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           +  SV WNSMI+G++ N +D EA   F+ M+  G     +T ASV+ +C+SL  L   + 
Sbjct: 266 NKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRV 325

Query: 259 VHGHACKVGV-------------------IDD-------------VIVASALLDTYSKRG 286
           +H    K G+                   IDD             V+  +A++  Y + G
Sbjct: 326 LHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNG 385

Query: 287 MPSDACKLFSELK---------VYDTILL--------------------------NTMIT 311
               A  LFS ++          Y TIL                             ++ 
Sbjct: 386 DTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLD 445

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
            +   G I DA  +F  +  K +I+W++M+ G +Q G   EA  +F  + +  ++ ++F+
Sbjct: 446 AFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFT 505

Query: 372 LASVISAC-ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK-------------- 416
             S+I+AC A  +S+E G+Q  A    + L++   +S+SLV  Y K              
Sbjct: 506 FCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQ 565

Query: 417 ------------CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                        GY        AL +F EM+   ++   ITF  ++SAC H GLV +GQ
Sbjct: 566 KERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQ 625

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
            +F+ M   +HI+P +EHYSCM+DL++RAG L +A+++I  MPF     +W  +L     
Sbjct: 626 NYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRV 685

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           H +  LG+  AE++I L+P+++ AY+ LS+I+A +G W +   +R +M ++ V K PG S
Sbjct: 686 HRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYS 745

Query: 578 WAD 580
           W +
Sbjct: 746 WIE 748



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 158/375 (42%), Gaps = 87/375 (23%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A+++FD+T        N ++  Y   ++  EAL LF  + R+G+  D+ T++ VLS C+ 
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
                 G+QVH    K G++  + V ++L+D Y+K G   D  ++F E            
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDE------------ 162

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                              M ++ ++SWNS++ G S N    +  +LFC M     R D 
Sbjct: 163 -------------------MGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDY 203

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------- 419
           +++++VI+A AN  ++ +G Q+ A V  +G ++++++  SL+    K G           
Sbjct: 204 YTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDN 263

Query: 420 -----------------------DALALFNEMRNTGVKPTIITFTAILSACD-------- 448
                                  +A   FN M+  G KPT  TF +++ +C         
Sbjct: 264 MENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLV 323

Query: 449 ---HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
              HC  +K G            +       + ++    +   +++A +L   M     V
Sbjct: 324 RVLHCKTLKSG------------LSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSV 371

Query: 506 GMWSSILRGCVAHGD 520
             W++++ G + +GD
Sbjct: 372 VSWTAMISGYLQNGD 386



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+  GKQ H + +K   LN+ L +++ L+ +Y + GN   A  +F     R+  SWN+MI
Sbjct: 519 SVEQGKQFHAYAIKLR-LNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMI 577

Query: 80  EGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLAALEYGK-QIHSHILVN 134
            G+ + G  +K+L++F  M ++N      ++  +IS  A A L     GK Q + +I++N
Sbjct: 578 SGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLV----GKGQNYFNIMIN 633

Query: 135 GLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMKEP 169
               +  +   S +++LY + G    A  ++N M  P
Sbjct: 634 DHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFP 670


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 174/591 (29%), Positives = 283/591 (47%), Gaps = 66/591 (11%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K+LH H +  G+ N    ++  +    ++  +   A  +F+++     F WN ++ G  +
Sbjct: 328 KKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQ 387

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVL 142
               + ++  +    +K     NM      KA     A + G+Q+HSH++  G   D  +
Sbjct: 388 SDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFV 447

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
            +SL++LY                               A CG +  AR +FD       
Sbjct: 448 SNSLIHLY-------------------------------AACGDLVCARSIFDEMLVKDV 476

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V WNS+I GY   N   E L LF  M+   V  D  T+  V+SAC+ LG       +  +
Sbjct: 477 VSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRY 536

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
             +  +  DV + + L+D Y + G    A K+FS++K  +T+ LN MI  Y+  G +  A
Sbjct: 537 IERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSA 596

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
           K IF  +PNK LISW+SMI   SQ     ++L+LF  M +  ++ D   +ASV+SACA++
Sbjct: 597 KKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHL 656

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNT--------- 431
            +L+LG+ +   V    + +D I+  SL+D + KCG   +AL +F EM            
Sbjct: 657 GALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSII 716

Query: 432 ----------------------GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                                 G +P  +TF  +L AC +  LV+EG   F+ MK  +++
Sbjct: 717 LGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNL 776

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           +P+++HY C+V + +RAG L +A N I +MP   D  +W  +L  C  HG+  +     +
Sbjct: 777 EPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATK 836

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++ ELDP N+  Y+ LS+I+A++  W  +  +R  M +  V K P CS  D
Sbjct: 837 KLSELDPSNSGDYMLLSNIYASADRWSDALNVRQWMADTAVRKSPACSVVD 887



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 246/497 (49%), Gaps = 48/497 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C   ++   G+Q+H H +K G L     ++N L+ +Y  CG+   A  +FDEM  +
Sbjct: 416 VLKACAKTYAPKEGEQMHSHVIKLGFLLDIF-VSNSLIHLYAACGDLVCARSIFDEMLVK 474

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWN++I G+ +    ++ L LF +M     Q +  +   +IS  A   L        
Sbjct: 475 DVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVIS--ACTHLGDWSMADC 532

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +  +I  N ++ D  LG++L++ Y + G   SA +V + MK+ +   L+A+I  YA  G 
Sbjct: 533 MVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGN 592

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  A+++FD+  +   + W+SMI  Y   +  +++L LF +M+R  V  DA  +ASVLSA
Sbjct: 593 LVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSA 652

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ LG L+ GK +H +  +  +  D I+ ++L+D ++K G   +A ++F+E++  DT+  
Sbjct: 653 CAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTL-- 710

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                                        SWNS+I+GL+ NG   EAL++F +M     R
Sbjct: 711 -----------------------------SWNSIILGLANNGFEDEALNIFYSMLTEGPR 741

Query: 367 MDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGY--DALA 423
            ++ +   V+ ACAN   ++ G   F R+ T+  L+        +V    + G    A  
Sbjct: 742 PNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKN 801

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVDL 482
             NEM    + P  + +  +L AC   G V   +    A K    +DP     Y  + ++
Sbjct: 802 FINEM---PLAPDPVVWRILLGACKTHGNVAVAEV---ATKKLSELDPSNSGDYMLLSNI 855

Query: 483 FARAGCLNEAVNLIEQM 499
           +A A   ++A+N+ + M
Sbjct: 856 YASADRWSDALNVRQWM 872



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 161/303 (53%), Gaps = 34/303 (11%)

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +IT ++  G IE A+ +F  MP ++++SW  +I G ++     EA+ LF +M    + 
Sbjct: 10  NVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGIS 69

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
             + ++ +V+ A +N+  + +GE +       G+ SD  +  SL+D Y K G        
Sbjct: 70  PSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKV 129

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +AL LF EMR  G++P  ITF ++++AC H GL
Sbjct: 130 FDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGL 189

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V++G  +F +M ++Y+IDPEI+H+ C++D+  RAG L EA  +IE +P E +V +W  +L
Sbjct: 190 VEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILL 249

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  +G+  +G++  + + +L+ E+   +  LS++    G +  +   R ++ E+ + K
Sbjct: 250 GCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVK 309

Query: 573 LPG 575
           +PG
Sbjct: 310 VPG 312



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 218/494 (44%), Gaps = 55/494 (11%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           MP +N  SWN +I GF   G  E +  LF+ MP +N  SW  LI G+ +A L A      
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVA-- 58

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP----DDFCLSALISGYA 182
           +  H++  G+    +   ++V      G       +     +     D    ++LI  YA
Sbjct: 59  LFRHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYA 118

Query: 183 NCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
             G + ++ +VFD   D  + V W S+ISG+  +    EAL LF +MRR G+  +  T  
Sbjct: 119 KIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFL 178

Query: 242 SVLSACSSLGFLEHG--------------KQVHGHACKVGVID----------------- 270
           SV++ACS  G +E G               ++    C + ++                  
Sbjct: 179 SVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPV 238

Query: 271 --DVIVASALLDTYSKRG---MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
             +VIV   LL   SK G   M   A K+ S+L+         +  V +  GR  DA+  
Sbjct: 239 EVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQA 298

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEAL-DLFCNMNKLDLRMDKFSLASVISACANISS 384
            + +  + ++    + + ++++   +EA+  L  ++    L   +++++ VI + A    
Sbjct: 299 RKLLDERKIVKVPGLALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYA---- 354

Query: 385 LELGEQVFARVTIIGLDSD-QIISTSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFT 441
           L+  + VFA      ++S    +  +L+    +     DA+  + + +  G+KP  +TF 
Sbjct: 355 LQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFP 414

Query: 442 AILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
            +L AC      KEG++     +K  + +D  + +   ++ L+A  G L  A ++ ++M 
Sbjct: 415 FVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSN--SLIHLYAACGDLVCARSIFDEML 472

Query: 501 FEADVGMWSSILRG 514
            + DV  W+S++ G
Sbjct: 473 VK-DVVSWNSLIGG 485



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 131/600 (21%), Positives = 250/600 (41%), Gaps = 101/600 (16%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMI 79
           I +G+ LH + +KKGI+ S   + N L+ +Y + G+  ++L +FDEM  RRN  SW ++I
Sbjct: 88  ILMGEMLHGYCVKKGIM-SDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSII 146

Query: 80  EGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ-IHSHILVN 134
            GF   G   ++L+LF  M     + N  ++  +I+  +   L  +E G     S +   
Sbjct: 147 SGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGL--VEQGLAFFKSMVYEY 204

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRV 193
            +D +      ++++ G+ G    A Q++  +  E +      L+   +  G++   +R 
Sbjct: 205 NIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRA 264

Query: 194 FDRTTDTS-------SVMWNSMIS-GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
               +D         +V+ N +   G  S+ E    LL   K+ +         LA V++
Sbjct: 265 IKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVK------VPGLALVVT 318

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
              S   +E  K++H H    G+ +     S ++ +Y+              L+  D + 
Sbjct: 319 --RSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYA--------------LQQSDLVF 362

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                           A  +F  + + +   WN+++ GL+Q+ +P +A+  +    +  +
Sbjct: 363 ----------------AHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGM 406

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           + D  +   V+ ACA   + + GEQ+ + V  +G   D  +S SL+  Y  CG       
Sbjct: 407 KPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARS 466

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      + LALF  M+   V+   +T   ++SAC H G 
Sbjct: 467 IFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGD 526

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
                     ++ + HI+ ++   + ++D + R G L  A  +  QM  +  V + ++++
Sbjct: 527 WSMADCMVRYIE-RNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTL-NAMI 584

Query: 513 RGCVAHGDKGLGRKVAERMIELD----PENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
                 G+    +K+ +++   D        CAY Q +S F+ S E     L R + R K
Sbjct: 585 HAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQ-ASHFSDSLE-----LFRQMQRAK 638


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 181/569 (31%), Positives = 271/569 (47%), Gaps = 114/569 (20%)

Query: 60   ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGF 113
            A   +  + + N  SWN++I    + G   ++L+ F+      ++P ++ F    + S  
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCT-IKSCS 2026

Query: 114  AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
            A  DL +   G+  H    V G                                E D F 
Sbjct: 2027 ALCDLVS---GRMSHQQAFVFGF-------------------------------ETDLFV 2052

Query: 174  LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--- 230
             SALI  Y+ CG++ DAR +FD     + V W SMI+GY+ N +   ALLLF        
Sbjct: 2053 SSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEET 2112

Query: 231  -----NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
                 N V  D+  + SVLSACS +      + VHG   K G    + V + L+D Y+K 
Sbjct: 2113 EVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAK- 2171

Query: 286  GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                                          CG+   +K +F  M  K  ISWNSMI   +
Sbjct: 2172 ------------------------------CGQPLVSKKVFDWMEEKDDISWNSMIAVYA 2201

Query: 346  QNGSPIEALDLFCNMNK-LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
            Q+G   EAL++F  M + + +R +  +L++V+ ACA+  +L  G+ +  +V  + L+ + 
Sbjct: 2202 QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNV 2261

Query: 405  IISTSLVDFYCKCGY---------------------------------DALALFNEMRNT 431
             + TS++D YCKCG                                  +AL +F +M   
Sbjct: 2262 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRA 2321

Query: 432  GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
            GVKP  ITF ++L+AC H GLV+EG  WF+AMK +Y I+P IEHY CMVDLF RAGCLNE
Sbjct: 2322 GVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNE 2381

Query: 492  AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551
            A NLI++M  + D  +W S+L  C  H +  LG   A+++ ELDP+N   Y+ LS+++A 
Sbjct: 2382 AYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYAD 2441

Query: 552  SGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +G W     +R +M+ + + K PG S  +
Sbjct: 2442 AGRWADVERMRMLMKNRQLVKPPGFSLVE 2470



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 186/401 (46%), Gaps = 64/401 (15%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +QIH+ I+ +GL  D +L   L++LY   G    A  +   ++ P  F            
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT----------- 92

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                               WN +I     N    +AL+L+  M   G+  D  T   V+
Sbjct: 93  --------------------WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVI 132

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC++   ++ GK VHG   K G   DV V + L+D Y K G    A K+F +++V + +
Sbjct: 133 KACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVV 192

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
              T+I+   SCG +++A+ IF  +P+K+++SW +MI G  +N  P EAL+LF  M   +
Sbjct: 193 SWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN 252

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------- 417
           +  +++++ S+I AC  +  L LG  +        ++    + T+L+D Y KC       
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAI 312

Query: 418 --------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                     G +AL LF+EM    VKP  ITF  +L AC H  
Sbjct: 313 EVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIK 372

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
            VKEG  +F  M   Y I P  EHY CM +L+AR+  L+EA
Sbjct: 373 NVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 195/390 (50%), Gaps = 41/390 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ+C     +   +Q+H   ++ G+ N  L +  +L+ +Y   G    A+LLF ++   
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQL-LTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
             F+WN +I      G  E++L L+  M       + F++  +I   A  +  +++ GK 
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIK--ACTNFLSIDLGKV 146

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  ++  G   D  + ++L++ Y KCG    A +V   M+  +    + +ISG  +CG 
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +ARR+FD     + V W +MI+GYI N +  EAL LF +M+   +  +  T+ S++ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ +G L  G+ +H +A K  +   V + +AL+D YSK G   DA +             
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIE------------- 313

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                             +F TMP KSL +WNSMI  L  +G   EAL+LF  M +++++
Sbjct: 314 ------------------VFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355

Query: 367 MDKFSLASVISACANISSLELGEQVFARVT 396
            D  +   V+ AC +I +++ G   F R+T
Sbjct: 356 PDAITFIGVLCACVHIKNVKEGCAYFTRMT 385



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 223/491 (45%), Gaps = 84/491 (17%)

Query: 12   LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
            ++SC+    +  G+  H      G   + L +++ L+ MY +CG   DA  LFDE+P RN
Sbjct: 2022 IKSCSALCDLVSGRMSHQQAFVFG-FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 2080

Query: 72   CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------NDFSWNMLI-----SGFAKADLA 119
              SW +MI G+++    + +L LF    ++       N+   + ++     S  ++    
Sbjct: 2081 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 2140

Query: 120  ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
             +  G  +H  ++  G D    +G++L++ Y KCG    + +V + M+E DD   +++I+
Sbjct: 2141 GITEG--VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIA 2198

Query: 180  GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDAS 238
             YA  G                       +SG        EAL +FH M R+ GV  +A 
Sbjct: 2199 VYAQSG-----------------------LSG--------EALEVFHGMVRHVGVRYNAV 2227

Query: 239  TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
            TL++VL AC+  G L  GK +H    K+ +  +V V ++++D Y K              
Sbjct: 2228 TLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCK-------------- 2273

Query: 299  KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                             CGR+E AK  F  M  K++ SW +M+ G   +G   EALD+F 
Sbjct: 2274 -----------------CGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFY 2316

Query: 359  NMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKC 417
             M +  ++ +  +  SV++AC++   +E G   F A      ++        +VD + + 
Sbjct: 2317 KMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRA 2376

Query: 418  GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHY 476
            G    A +N ++   +KP  + + ++L AC     V  G+    A +  + +DP+   +Y
Sbjct: 2377 GCLNEA-YNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEI---AAQKLFELDPDNCGYY 2432

Query: 477  SCMVDLFARAG 487
              + +L+A AG
Sbjct: 2433 VLLSNLYADAG 2443



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L+ +L +C    ++  GK +H   +K   L   + +   ++ MY +CG    A   FD M
Sbjct: 2229 LSAVLLACAHAGALRAGKCIHDQVIKMD-LEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM 2287

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAKADLAALE---- 122
              +N  SW AM+ G+   G  +++L +F  M +     ++   +S  A    A L     
Sbjct: 2288 KEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGW 2347

Query: 123  --YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              +    H + +  G++        +V+L+G+ G  N A  ++  MK   DF +   + G
Sbjct: 2348 HWFNAMKHKYDIEPGIEH----YGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLG 2403

Query: 181  YANCGKMND-----ARRVFDRTTD 199
                 K  D     A+++F+   D
Sbjct: 2404 ACRIHKNVDLGEIAAQKLFELDPD 2427


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 186/613 (30%), Positives = 294/613 (47%), Gaps = 61/613 (9%)

Query: 12   LQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            L++C     I +G ++H   +K+G  L+  L  A  L+  Y RC     A  +F EMP  
Sbjct: 681  LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCA--LMNFYGRCWGLEKANQVFHEMPNP 738

Query: 71   NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
                WN  I   ++    +K ++LF  M      +    I    +A   + AL   KQIH
Sbjct: 739  EALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIH 798

Query: 129  SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
             ++   GLD D  L + L+++Y K G    A +V + M+  +    +++IS YA  G +N
Sbjct: 799  GYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLN 858

Query: 189  DARRVF------DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            DA  +F      D   D   V WN ++SG+  +    E L +  +M+  G   ++S++ S
Sbjct: 859  DAWSLFYELESSDMKPDI--VTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTS 916

Query: 243  VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
            VL A S LGFL  GK+ HG+  + G   DV V ++L+D Y K      A  +F  +K  +
Sbjct: 917  VLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRN 976

Query: 303  TILLNTMITVYSSCGRIEDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPIEALDLFC 358
                N++++ YS  G  EDA  +   M  +     L++WN MI G +  G   +A     
Sbjct: 977  IFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAF---- 1032

Query: 359  NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC- 417
                     +  S+  ++ ACA++S L+ G+++       G   D  ++T+L+D Y K  
Sbjct: 1033 -------MPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSS 1085

Query: 418  --------------------------------GYDALALFNEMRNTGVKPTIITFTAILS 445
                                            G +A+++FNEM+  GV P  ITFTA+LS
Sbjct: 1086 SLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLS 1145

Query: 446  ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
            AC + GL+ EG K+FD+M   Y I P +EHY CMVDL  RAG L+EA +LI  MP + D 
Sbjct: 1146 ACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDA 1205

Query: 506  GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
             +W ++L  C  H +       A+ + +L+P N+  YI + ++++    WE    +R++M
Sbjct: 1206 TIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELM 1265

Query: 566  REKHVGKLPGCSW 578
                V      SW
Sbjct: 1266 GAAGVRNRQVWSW 1278



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/484 (27%), Positives = 220/484 (45%), Gaps = 90/484 (18%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + R+LQ+C    +++  KQ+H +  + G L+S + + N L+ MY + G    A  +FD M
Sbjct: 778  IVRVLQACGKMGALNAAKQIHGYVFRFG-LDSDVSLCNPLISMYSKNGKLELARRVFDSM 836

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGF---------- 113
              RN  SWN+MI  +  LG    +  LF  +     + +  +WN L+SG           
Sbjct: 837  ENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVL 896

Query: 114  -----------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
                                   A ++L  L  GK+ H ++L NG D D  +G+SL+++Y
Sbjct: 897  NILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 956

Query: 151  GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS----VMWN 206
             K     SA  V + MK  + F  ++L+SGY+  G   DA R+ ++          V WN
Sbjct: 957  VKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWN 1016

Query: 207  SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
             MISGY                 R   + +++++  +L AC+SL  L+ GK++H  + + 
Sbjct: 1017 GMISGYA-----------MWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRN 1065

Query: 267  GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
            G I+DV VA+AL+D YSK                                  +++A  +F
Sbjct: 1066 GFIEDVFVATALIDMYSK-------------------------------SSSLKNAHKVF 1094

Query: 327  RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
            R + NK+L SWN MI+G +  G   EA+ +F  M K+ +  D  +  +++SAC N   + 
Sbjct: 1095 RRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIG 1154

Query: 387  LGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAI 443
             G + F + +T   +         +VD   + GY  +A  L + M    +KP    + A+
Sbjct: 1155 EGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTM---PLKPDATIWGAL 1211

Query: 444  LSAC 447
            L +C
Sbjct: 1212 LGSC 1215



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 156/375 (41%), Gaps = 46/375 (12%)

Query: 163 LNMMKEPD----DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           L M+K P     D     LIS Y   G    A  VF      + + WNS +  + S+   
Sbjct: 595 LVMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGS 654

Query: 219 TEALL-LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
              +L +F ++   GV+ D+   +  L  C+ +  +  G ++HG   K G   DV +  A
Sbjct: 655 LHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCA 714

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           L++ Y +                               C  +E A  +F  MPN   + W
Sbjct: 715 LMNFYGR-------------------------------CWGLEKANQVFHEMPNPEALLW 743

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N  I+   Q+    + ++LF  M    L+ +  ++  V+ AC  + +L   +Q+   V  
Sbjct: 744 NEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFR 803

Query: 398 IGLDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
            GLDSD  +   L+  Y K G   LA  +F+ M N        ++ +++S+    G + +
Sbjct: 804 FGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTS----SWNSMISSYAALGFLND 859

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSIL 512
               F  ++    + P+I  ++C++      G   E +N++++M    F+ +    +S+L
Sbjct: 860 AWSLFYELE-SSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVL 918

Query: 513 RGCVAHGDKGLGRKV 527
           +     G   +G++ 
Sbjct: 919 QAISELGFLNMGKET 933


>gi|297820962|ref|XP_002878364.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324202|gb|EFH54623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 767

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 190/632 (30%), Positives = 295/632 (46%), Gaps = 135/632 (21%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N LL    + G   +A  +FD+MP R+ F+WN MI  +        + QLF   P KN 
Sbjct: 32  SNLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLADAEQLFRSNPVKNT 91

Query: 104 FSWNMLISGFAKA---------------------------------DLAALEYGKQIHSH 130
            SWN LISG+ K+                                  L  L  G+QIH H
Sbjct: 92  ISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLLLLLRGEQIHGH 151

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +  G D D       VN+                        ++ L++ YA C ++++A
Sbjct: 152 TIKTGFDLD-------VNV------------------------VNGLLAMYAQCKRISEA 180

Query: 191 RRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
             +FD    + ++V W SM++GY  N    +A+  F  +RR+G   +  T  SVL+AC+S
Sbjct: 181 EYLFDTMAGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRRDGNQSNQYTFPSVLTACAS 240

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK------------------------- 284
           +     G QVHG   K G   ++ V SAL+D Y+K                         
Sbjct: 241 VSACRVGVQVHGCIVKSGFKTNIYVQSALIDMYAKCRDLESARALLEGMEVDDVVSWNSM 300

Query: 285 ------RGMPSDACKLFSELKVYD------TI--LLN------TMITVYSSC-------- 316
                 +G+  +A  +F  +   D      TI  +LN      T + + SS         
Sbjct: 301 IVGCVRQGLIEEALSMFGRMHERDMKIDDFTIPSILNCFASSRTEMKIASSAHCLIVKPG 360

Query: 317 ------GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                 G ++ A  +F  M  K +ISW +++ G + NG   EAL LFCNM    +  D+ 
Sbjct: 361 MRLTSLGIMDSALKVFEGMIEKDVISWTALVTGNTHNGFYEEALKLFCNMRVGGIYPDQI 420

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEM 428
             ASV+SA A ++ LE G+QV       G  S   ++ SLV  Y KCG   DA  +FN M
Sbjct: 421 VTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSM 480

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488
                   +IT+T I+      GL++E Q++FD+M+  Y I P  EHY+CM+DLF R+G 
Sbjct: 481 EIR----DLITWTCII-----VGLIEEAQRYFDSMRTVYGITPGPEHYACMIDLFGRSGD 531

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
             +A  L+ QM  E D  +W +IL     HG+   G + A+ +++L+P NA  Y+ LS++
Sbjct: 532 FVKAEELLHQMEVEPDATVWKAILAASRKHGNIENGERAAKTLMKLEPNNAVPYVLLSNM 591

Query: 549 FATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++ +G  ++++ +R +M+ +++ K PGCSW +
Sbjct: 592 YSAAGRQDEAANVRRLMKSRNINKEPGCSWVE 623



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 202/422 (47%), Gaps = 73/422 (17%)

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IHSH     L  + +LG        K G  + A Q+ + M E D+F  + +I  Y+N  +
Sbjct: 21  IHSHADRTKLHSNLLLGD-----LSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRR 75

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + DA ++F      +++ WN++ISGY  +    EA  LF +M+ +G+  +  TL SVL  
Sbjct: 76  LADAEQLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRM 135

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+SL  L  G+Q+HGH  K G   DV V                               +
Sbjct: 136 CTSLLLLLRGEQIHGHTIKTGFDLDVNV-------------------------------V 164

Query: 307 NTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
           N ++ +Y+ C RI +A+++F TM   K+ ++W SM+ G SQNG   +A++ F ++ +   
Sbjct: 165 NGLLAMYAQCKRISEAEYLFDTMAGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRRDGN 224

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALA 423
           + ++++  SV++ACA++S+  +G QV   +   G  ++  + ++L+D Y KC     A A
Sbjct: 225 QSNQYTFPSVLTACASVSACRVGVQVHGCIVKSGFKTNIYVQSALIDMYAKCRDLESARA 284

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS--CMVD 481
           L   M    V    +++ +++  C   GL++E    F  M   +  D +I+ ++   +++
Sbjct: 285 LLEGMEVDDV----VSWNSMIVGCVRQGLIEEALSMFGRM---HERDMKIDDFTIPSILN 337

Query: 482 LFARA------------------------GCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
            FA +                        G ++ A+ + E M  E DV  W++++ G   
Sbjct: 338 CFASSRTEMKIASSAHCLIVKPGMRLTSLGIMDSALKVFEGM-IEKDVISWTALVTGNTH 396

Query: 518 HG 519
           +G
Sbjct: 397 NG 398



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 222/481 (46%), Gaps = 83/481 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C +   +  G+Q+H H +K G  +  + + N LL MY +C   ++A  LFD M
Sbjct: 129 LGSVLRMCTSLLLLLRGEQIHGHTIKTG-FDLDVNVVNGLLAMYAQCKRISEAEYLFDTM 187

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALE 122
              +N  +W +M+ G+ + G   K+++ F  +     Q N +++  +++  A A ++A  
Sbjct: 188 AGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRRDGNQSNQYTFPSVLT--ACASVSACR 245

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK--------------- 167
            G Q+H  I+ +G   +  + S+L+++Y KC D  SA  +L  M+               
Sbjct: 246 VGVQVHGCIVKSGFKTNIYVQSALIDMYAKCRDLESARALLEGMEVDDVVSWNSMIVGCV 305

Query: 168 --------------------EPDDFCLSAL------------ISGYANC----------- 184
                               + DDF + ++            I+  A+C           
Sbjct: 306 RQGLIEEALSMFGRMHERDMKIDDFTIPSILNCFASSRTEMKIASSAHCLIVKPGMRLTS 365

Query: 185 -GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G M+ A +VF+   +   + W ++++G   N    EAL LF  MR  G+  D    ASV
Sbjct: 366 LGIMDSALKVFEGMIEKDVISWTALVTGNTHNGFYEEALKLFCNMRVGGIYPDQIVTASV 425

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSA + L  LE G+QVHG+  K G    + V ++L+  Y+K G   DA  +F+ +++ D 
Sbjct: 426 LSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDL 485

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-----WNSMIVGLSQNGSPIEALDLFC 358
           I    +I      G IE+A+  F +M     I+     +  MI    ++G  ++A +L  
Sbjct: 486 ITWTCIIV-----GLIEEAQRYFDSMRTVYGITPGPEHYACMIDLFGRSGDFVKAEEL-- 538

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV-DFYCKC 417
            ++++++  D     ++++A     ++E GE+  A  T++ L+ +  +   L+ + Y   
Sbjct: 539 -LHQMEVEPDATVWKAILAASRKHGNIENGER--AAKTLMKLEPNNAVPYVLLSNMYSAA 595

Query: 418 G 418
           G
Sbjct: 596 G 596


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 177/612 (28%), Positives = 293/612 (47%), Gaps = 99/612 (16%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I  L  +L  C     + +G ++H   +K G L+  + + N L+ MY +CG  T+A +LF
Sbjct: 134 IATLVTVLPVCAREVDVQMGIRIHGLAVKLG-LSEDVRVNNSLVDMYSKCGYLTEAQMLF 192

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN---MLISGFAKADLAAL 121
           D+  R+N  SWN MI G    G+  ++  LF  M  + D   N   +L    A  +++ L
Sbjct: 193 DKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL 252

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
              K++H + + +G  +D ++ +  V                               + Y
Sbjct: 253 RSLKELHGYSIRHGFQYDELVANGFV-------------------------------AAY 281

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           A CG +  A RVF      +   WN++I G   N +  +AL L+ +M  +G++ D  T+ 
Sbjct: 282 AKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIG 341

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           S+L A + L  L +GK+VHG   + G+  D  +  +LL                      
Sbjct: 342 SLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLL---------------------- 379

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                    ++Y  CG    A+ +F  M  KS +SWN+MI G SQNG P +AL LF  + 
Sbjct: 380 ---------SLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLV 430

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
               +    ++ SV+ AC+  S+L LG++         L  D  ++ S +D Y K G   
Sbjct: 431 SDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIK 490

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +++ LF  MR  G  P   TF  IL+ C 
Sbjct: 491 ESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCS 550

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV+EG K+F+ M+  + I+P++EHY+C++D+  RAG L++A+ L+ +MP + D  +W
Sbjct: 551 HAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVW 610

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           SS+L  C   G+  +G+ VAE+++EL+P+N   Y+ LS+++A SG W+    +R ++++ 
Sbjct: 611 SSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDI 670

Query: 569 HVGKLPGCSWAD 580
            + K  GCSW +
Sbjct: 671 GLQKDAGCSWIE 682



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 138/561 (24%), Positives = 246/561 (43%), Gaps = 107/561 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C       +G+ +H   +K G+L     + N L+ MY + G    A+ +F  MP R
Sbjct: 37  VIKACTGSLDRGLGEVIHGMVIKMGLLLDVF-VGNALIAMYGKFGFVDAAVKVFHYMPVR 95

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY----GKQ 126
           N  SWN++I GF + G  +    +   M    +     + +      + A E     G +
Sbjct: 96  NLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIR 155

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH   +  GL  D  + +SLV++Y K                               CG 
Sbjct: 156 IHGLAVKLGLSEDVRVNNSLVDMYSK-------------------------------CGY 184

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLS 245
           + +A+ +FD+    ++V WN+MI G  +     EA  LF +M+    +E +  T+ ++L 
Sbjct: 185 LTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILP 244

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC  +  L   K++HG++ + G   D +VA+  +  Y+K                     
Sbjct: 245 ACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAK--------------------- 283

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     CG +  A+ +F +M  K++ SWN++I G +QNG P +AL+L+  M    L
Sbjct: 284 ----------CGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGL 333

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             D F++ S++ A A++ SL  G++V   V   GL+ D  I  SL+  Y  CG       
Sbjct: 334 VPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARL 393

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      DAL LF ++ + G +P+ I   ++L AC     
Sbjct: 394 LFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSA 453

Query: 453 VKEGQKWF-DAMKWQYHIDPEIEHYSC-MVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           ++ G++    A+K     D  +   +C  +D++A++GC+ E+ ++ + +    D+  W++
Sbjct: 454 LRLGKETHCYALKALLMEDVFV---ACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNA 509

Query: 511 ILRGCVAHGDKGLGRKVAERM 531
           I+     HGD     ++ ERM
Sbjct: 510 IIAAYGVHGDGEESIELFERM 530



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 132/326 (40%), Gaps = 79/326 (24%)

Query: 236 DASTLASVLSACSSLGFLEHG--KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           D  T   V+ AC+  G L+ G  + +HG   K+G++ DV V +AL+  Y K G    A K
Sbjct: 30  DNFTFPCVIKACT--GSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVK 87

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +F  +                               P ++L+SWNS+I G S+NG   + 
Sbjct: 88  VFHYM-------------------------------PVRNLVSWNSIISGFSENGFSKDC 116

Query: 354 LDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
            D+   M   +  L  D  +L +V+  CA    +++G ++      +GL  D  ++ SLV
Sbjct: 117 FDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLV 176

Query: 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
           D Y KCGY  +A  LF++      +   +++  ++      G + E    F  M+ Q  I
Sbjct: 177 DMYSKCGYLTEAQMLFDKNN----RKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDI 232

Query: 470 D----------------------PEIEHYSC-------------MVDLFARAGCLNEAVN 494
           +                       E+  YS               V  +A+ G L  A  
Sbjct: 233 EVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAER 292

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGD 520
           +   M  +  V  W++++ GC  +GD
Sbjct: 293 VFYSMETKT-VNSWNALIGGCAQNGD 317



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 38/216 (17%)

Query: 340 MIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           M V + +N    +A+D+F  +    +   D F+   VI AC       LGE +   V  +
Sbjct: 1   MHVAVHRNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKM 60

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEM--RN------------------------ 430
           GL  D  +  +L+  Y K G+   A+ +F+ M  RN                        
Sbjct: 61  GLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDML 120

Query: 431 -------TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
                   G+ P I T   +L  C     V+ G +    +  +  +  ++   + +VD++
Sbjct: 121 VEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIR-IHGLAVKLGLSEDVRVNNSLVDMY 179

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           ++ G L EA  L ++   +  V  W++++ G    G
Sbjct: 180 SKCGYLTEAQMLFDKNNRKNAVS-WNTMIGGLCTKG 214


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 183/595 (30%), Positives = 287/595 (48%), Gaps = 107/595 (17%)

Query: 24   GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
            G+ +H   +K G L+S + I N LL +Y   G   DA L+F  M  R+  SWN+M+  ++
Sbjct: 1067 GRGIHGLVVKLG-LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYV 1125

Query: 84   KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA------LEYGKQIHSHILVNGLD 137
            + G   K L    ++ +       M    FA A LAA      L   K +H+ I+V G  
Sbjct: 1126 QDG---KCLDGLKILAELLQMGKVMNHVTFASA-LAACSNPECLIESKIVHALIIVAGFH 1181

Query: 138  FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
               ++G++LV +YGK G          MM E                     A++V    
Sbjct: 1182 DFLIVGNALVTMYGKLG----------MMME---------------------AKKVLQTM 1210

Query: 198  TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHG 256
                 V WN++I G+  N E  EA+  +  +R  G+  +  T+ SVL ACS+    L+HG
Sbjct: 1211 PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHG 1270

Query: 257  KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
              +H H         +++     D Y K                      N++IT+Y+ C
Sbjct: 1271 MPIHAH---------IVLTGFESDDYVK----------------------NSLITMYAKC 1299

Query: 317  GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
            G +  + +IF  + NKS I+WN+M+   + +G   EAL +F  M  + + +D+FS +  +
Sbjct: 1300 GDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGL 1359

Query: 377  SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALAL---------- 424
            +A AN++ LE G+Q+   V  +G +SD  ++ + +D Y KCG  +D L +          
Sbjct: 1360 AATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRL 1419

Query: 425  ---------------------FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                                 F+EM   G KP  +TF ++LSAC+H GLV EG  ++D+M
Sbjct: 1420 SWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSM 1479

Query: 464  KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
              ++ + P IEH  C++DL  R+G L+ A   I++MP   +   W S+L  C  HG+  L
Sbjct: 1480 TREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLEL 1539

Query: 524  GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
             RK AE ++ELDP +  AY+  S++ ATSG+WE    +R  M   ++ K P CSW
Sbjct: 1540 ARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSW 1594



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 185/617 (29%), Positives = 288/617 (46%), Gaps = 107/617 (17%)

Query: 3   TRID---YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           TR+D   YL ++LQ C    +   G  +H H +  G   S L +  +L+  Y++ G+   
Sbjct: 26  TRLDPSLYL-KILQLCIDKKAKKQGHLIHTHLITNG-FGSDLHLNTKLIIFYVKVGDVIA 83

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK 115
           A  +FD MP R+  SW AM+ G+ + G  EK+  LF+ M     + N F++   +   A 
Sbjct: 84  ARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALR--AC 141

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
             L  L+ G Q+   I           G  + NL+ K                      S
Sbjct: 142 TSLRCLDMGIQVQGCIQK---------GRFVENLFVK----------------------S 170

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           AL+  ++ CGKM DA  +F    +   V WN+MI GY       ++  +F  M R G++ 
Sbjct: 171 ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVP 230

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  TL SVL A +  G L    Q+HG   ++G     IV   L++ Y+K G         
Sbjct: 231 DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNG--------- 281

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG-SPIEAL 354
                                  +  AK + + M  K L S  ++I G +  G   ++AL
Sbjct: 282 ----------------------SLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDAL 319

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA--------------------- 393
           DLF  MN++++ MD   L S+++ CAN++S  LG Q+ A                     
Sbjct: 320 DLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMY 379

Query: 394 ---------RVTIIGLDSDQIIS-TSLVDFYCKCGYD--ALALFNEMRNTGVKPTIITFT 441
                    +     ++   +IS TSL+  Y K GY   A++L+ +M + G KP  +TF 
Sbjct: 380 AKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFL 439

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           ++L AC H GL  EG + F+ M  +Y+I P  EHYSCMVDLFAR G L EA NL+ ++  
Sbjct: 440 SLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDI 499

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           + +  +W +IL     +G   LG++ A  +  + PEN+  Y+ L+SI++ +G W+ +  I
Sbjct: 500 KHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKI 559

Query: 562 RDIMREKHVGKLPGCSW 578
           R +M E+   K  G S+
Sbjct: 560 RKLMEERSTKKNAGYSF 576



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 225/501 (44%), Gaps = 47/501 (9%)

Query: 23   VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
             GK LH  F   G +N  +   N L+ MY + GN   A  +FDEM  RN  SW+ M+ G+
Sbjct: 762  AGKALHA-FCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGY 820

Query: 83   MKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            +++G  E+++ LF  M     + N F    LI+  +++   A E G Q+H  ++  G+  
Sbjct: 821  VRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE-GFQVHGFVVKTGILG 879

Query: 139  DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
            D  +G++LV+ YG  G   +A ++   M + +    ++L+ GY++ G             
Sbjct: 880  DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN------------ 927

Query: 199  DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
                                 E L ++ +MR+ GV  + +T A+V S+C  L     G Q
Sbjct: 928  -------------------PGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQ 968

Query: 259  VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
            V GH  + G  D V VA++L+  +S      +AC +F  +   D I  N MI+ Y+  G 
Sbjct: 969  VLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGL 1028

Query: 319  IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
              ++   F  M +    + ++ +  L    S ++ L     ++ L +   K  L S +  
Sbjct: 1029 CRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV---KLGLDSNVCI 1085

Query: 379  CANISSL--ELGEQVFARVTIIGLDSDQIIS-TSLVDFYCKCG--YDALALFNEMRNTGV 433
            C  + +L  E G    A +    +    +IS  S++  Y + G   D L +  E+   G 
Sbjct: 1086 CNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGK 1145

Query: 434  KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
                +TF + L+AC +   + E  K   A+         +   + +V ++ + G + EA 
Sbjct: 1146 VMNHVTFASALAACSNPECLIE-SKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAK 1204

Query: 494  NLIEQMPFEADVGMWSSILRG 514
             +++ MP + D   W++++ G
Sbjct: 1205 KVLQTMP-QPDRVTWNALIGG 1224


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 180/600 (30%), Positives = 300/600 (50%), Gaps = 82/600 (13%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +H   +K G+ N+   ++ +LL+  +      G P  A+ +FD +   N   WN M  
Sbjct: 5   RXIHAQMIKTGLHNTNYALS-KLLEFCVVSPHFDGFPY-AISVFDTIQEPNLLIWNTMFR 62

Query: 81  GFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
           G         +L+L+ VM       + +++  L+   AK+ +   + G+QIH H+L  G 
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIR--KEGQQIHGHVLKLGF 120

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D D  + +SL+++Y + G    A +V ++    D    +ALI+GY + G +  A+++FD 
Sbjct: 121 DLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDE 180

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEH 255
                 V WN+MISGY+      EAL LF +M     V  D ST+ +V+SAC+    +E 
Sbjct: 181 IPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G+ VH        I+D   AS L                          ++N +I +YS 
Sbjct: 241 GRHVHSW------INDHGFASNLK-------------------------IVNALIDLYSK 269

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
            G +E A  +F  + NK +ISWN++I G +      EAL LF  M +     +  ++ S+
Sbjct: 270 FGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 329

Query: 376 ISACANISSLELGE--QVFARVTIIGLDSD-QIISTSLVDFYCKCG--------YD---- 420
           + ACA++ ++++G    V+    + G+ ++   + TSL+D Y KCG        +D    
Sbjct: 330 LPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMS 389

Query: 421 ----------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                 A  +F+ MR  G++P  ITF  +LSAC H G++  G+ 
Sbjct: 390 NRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRN 449

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
            F +M   Y I P++EHY CM+DL   +G   EA  +I  MP E D  +W S+L+ C  H
Sbjct: 450 IFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIH 509

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV-GKLPGCS 577
           G+  LG   A+++I+++P N+ +Y+ LS+I+A +G W + + IR ++ +K +  K+PGCS
Sbjct: 510 GNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCS 569


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 176/633 (27%), Positives = 299/633 (47%), Gaps = 103/633 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L++C    S+  G  +H    K GI    + + N LL MY +     D   +FD+M
Sbjct: 219 MSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI-VNNGLLSMYCKFNGLIDGRRIFDKM 277

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML-ISGFAKA--DLAALEYG 124
             R+  SWN MI G+ ++G  E+S++LF  M   N F  ++L I+   +A   L  LE+G
Sbjct: 278 VLRDAVSWNTMICGYSQVGLYEESIKLF--MEMVNQFKPDLLTITSILQACGHLGDLEFG 335

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K +H +++ +G + D+   + L+N+Y K                               C
Sbjct: 336 KYVHDYMITSGYECDTTASNILINMYAK-------------------------------C 364

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G +  ++ VF       SV WNSMI+ YI N    EA+ LF KM +  V  D+ T   +L
Sbjct: 365 GNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLL 423

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S  + LG L  GK++H    K+G   +++V+                             
Sbjct: 424 SMSTQLGDLHLGKELHCDLAKMGFNSNIVVS----------------------------- 454

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             NT++ +Y+ CG + D+  +F  M  + +I+WN++I     +      L +   M    
Sbjct: 455 --NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEG 512

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           +  D  ++ S++  C+ +++   G+++   +  +GL+SD  +   L++ Y KCG      
Sbjct: 513 VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSF 572

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                        A+  F EM   G+ P  + F AI+ AC H G
Sbjct: 573 QVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSG 632

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV+EG  +F  MK  Y I+P IEHY+C+VDL +R+  L++A + I  MP + D  +W ++
Sbjct: 633 LVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGAL 692

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C   GD  +  +V+ER+IEL+P++   Y+ +S+I+A  G+W++   IR  ++ + + 
Sbjct: 693 LSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLK 752

Query: 572 KLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQ 604
           K PGCSW + I    +   T       F+E+ +
Sbjct: 753 KDPGCSWME-IQNKVYVFGTGTKFFEQFEEVNK 784



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 142/563 (25%), Positives = 246/563 (43%), Gaps = 112/563 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-E 66
           ++R L S  T   +H   +LH   +  G+ +S +  + +L+  Y    +PT +  +F   
Sbjct: 19  ISRALASAATTTQLH---KLHSLIITLGLHHSVI-FSAKLIAKYAHFRDPTSSFSVFRLA 74

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKNDFSWNMLISGFAKADLAALE 122
            P  N + WN++I      G   ++L L++    +  Q + +++  +I+  A A L   E
Sbjct: 75  SPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVIN--ACAGLLDFE 132

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
             K IH  +L  G   D  +G++L+++Y +  D                           
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFND--------------------------- 165

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
               ++ AR+VF+       V WNS+ISGY +N    EAL ++++ R  GV+ D+ T++S
Sbjct: 166 ----LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSS 221

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL AC  LG +E G  +HG   K+G+  DVIV + LL  Y K     D  ++F ++ + D
Sbjct: 222 VLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRD 281

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            +  NTMI  YS  G  E++  +F  M N+                              
Sbjct: 282 AVSWNTMICGYSQVGLYEESIKLFMEMVNQ------------------------------ 311

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
              + D  ++ S++ AC ++  LE G+ V   +   G + D   S  L++ Y KCG    
Sbjct: 312 --FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 369

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +A+ LF  M+ T VKP  +T+  +LS    
Sbjct: 370 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQ 428

Query: 450 CGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
            G +  G++   D  K  +  +  I   + +VD++A+ G + +++ + E M    D+  W
Sbjct: 429 LGDLHLGKELHCDLAKMGF--NSNIVVSNTLVDMYAKCGEMGDSLKVFENMK-ARDIITW 485

Query: 509 SSILRGCVAHGDKGLGRKVAERM 531
           ++I+  CV   D  LG ++  RM
Sbjct: 486 NTIIASCVHSEDCNLGLRMISRM 508



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 140/564 (24%), Positives = 247/564 (43%), Gaps = 113/564 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C       + K +H   L  G   S L I N L+ MY R  +   A  +F+EMP R
Sbjct: 121 VINACAGLLDFEMAKSIHDRVLDMG-FGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR 179

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  SWN++I G+   G+  ++L+++       V+P     S+ M     A   L ++E G
Sbjct: 180 DVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPD----SYTMSSVLRACGGLGSVEEG 235

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
             IH  I   G+  D ++ + L+++Y K   FN                           
Sbjct: 236 DIIHGLIEKIGIKKDVIVNNGLLSMYCK---FNG-------------------------- 266

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             + D RR+FD+     +V WN+MI GY       E++ LF +M  N    D  T+ S+L
Sbjct: 267 --LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSIL 323

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC  LG LE GK VH +    G   D   ++ L++ Y+K G    + ++FS +K  D++
Sbjct: 324 QACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSV 383

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N+MI VY                                QNGS  EA+ LF  M K D
Sbjct: 384 SWNSMINVY-------------------------------IQNGSFDEAMKLF-KMMKTD 411

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DAL 422
           ++ D  +   ++S    +  L LG+++   +  +G +S+ ++S +LVD Y KCG   D+L
Sbjct: 412 VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSL 471

Query: 423 ALF-------------------------------NEMRNTGVKPTIITFTAILSACDHCG 451
            +F                               + MR  GV P + T  +IL  C    
Sbjct: 472 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLA 531

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
             ++G++    + ++  ++ ++   + +++++++ G L  +  + + M  + DV  W+++
Sbjct: 532 AKRQGKEIHGCI-FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTAL 589

Query: 512 LRGCVAHGDKGLGRKVAERMIELD 535
           +  C  +G+   G+K      E++
Sbjct: 590 ISACGMYGE---GKKAVRAFGEME 610


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 181/663 (27%), Positives = 305/663 (46%), Gaps = 139/663 (20%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           VG+Q+H   LK G L   + +   L+ MYM+  +  D   +FDEM  +N  SW +++ G+
Sbjct: 122 VGRQVHCQSLKSGFLED-VSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGY 180

Query: 83  MKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            + G  ++ + L N M  +    N F++  ++   A AD + +E G Q+H+ I+ NG +F
Sbjct: 181 ARNGLNDEVIHLINQMQMEGVNPNGFTFATVLG--ALADESIIEGGVQVHAMIVKNGFEF 238

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
            +                               F  +ALI  Y     + DA  VFD   
Sbjct: 239 TT-------------------------------FVCNALICMYLKSEMVGDAEAVFDSMV 267

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
              SV WN MI GY +     E   +FH+MR  GV    +   + L  CS    L   KQ
Sbjct: 268 VRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQ 327

Query: 259 VHGHACKVGV-------------------IDD-------------VIVASALLDTYSKRG 286
           +H    K G                    +D+             V+  +A++  + +  
Sbjct: 328 LHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNN 387

Query: 287 MPSDACKLFSELK---------VYDTILL--------------------------NTMIT 311
               A  LF ++           Y T+L                             ++ 
Sbjct: 388 NNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLD 447

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
            Y   G + ++  +F ++P K +++W++M+ GL+Q     +A+++F  + K  ++ ++++
Sbjct: 448 AYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYT 507

Query: 372 LASVISACAN-ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK-------------- 416
            +SVI+AC++  +++E G+Q+ A     G  +   +S++L+  Y K              
Sbjct: 508 FSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQ 567

Query: 417 ------------CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                        GY        AL +F  M+N G+    +TF  +L+AC H GLV+EG+
Sbjct: 568 EERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGE 627

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           K+F+ M   YHID +IEHYSCMVDL++RAG  ++A+++I  MPF A   +W ++L  C  
Sbjct: 628 KYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRV 687

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           H +  LG+  AE+++ L P +A  Y+ LS+I A +G WE+ + +R +M E+ V K  GCS
Sbjct: 688 HRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCS 747

Query: 578 WAD 580
           W +
Sbjct: 748 WIE 750



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 122/501 (24%), Positives = 208/501 (41%), Gaps = 110/501 (21%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  G Q+H   +K G   +T  + N L+ MY++     DA  +FD M  R+  +WN MI 
Sbjct: 221 IEGGVQVHAMIVKNGFEFTTF-VCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIG 279

Query: 81  GFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-ADLAALEYGKQIHSHILVNGLDF 138
           G+  +G   +  Q+F+ M       S  +  +     +    L + KQ+H  ++ NG +F
Sbjct: 280 GYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEF 339

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMK------------------------------- 167
              + ++L+  Y KC   + A ++ +M                                 
Sbjct: 340 AQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQM 399

Query: 168 -----EPDDFCLSALISG-------------------------------YANCGKMNDAR 191
                 P+ F  S +++G                               Y   G + ++ 
Sbjct: 400 SREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESA 459

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC-SSL 250
           RVF        V W++M++G     +  +A+ +F ++ + GV  +  T +SV++AC SS 
Sbjct: 460 RVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSA 519

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             +EHGKQ+H  A K G  + + V+SALL  YSK+G    A K+F+  +  D +  N+MI
Sbjct: 520 ATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMI 579

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
           T Y   G  + A  +F+ M N+                                L +D  
Sbjct: 580 TGYGQHGDAKKALEVFQIMQNQG-------------------------------LPLDDV 608

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIIS--TSLVDFYCKCG-YD-ALALFN 426
           +   V++AC +   +E GE+ F  + I     D+ I   + +VD Y + G +D A+ + N
Sbjct: 609 TFIGVLTACTHAGLVEEGEKYF-NIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIIN 667

Query: 427 EMRNTGVKPTIITFTAILSAC 447
            M      PTI  +  +L+AC
Sbjct: 668 GMPFPA-SPTI--WRTLLAAC 685



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 121/524 (23%), Positives = 200/524 (38%), Gaps = 121/524 (23%)

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
           P  A  LFDE P ++   +N ++  F +  H  ++L LF     K+  S  + + G   +
Sbjct: 54  PRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLF-----KDLHSSGLGVDGLTLS 108

Query: 117 DLAALEY---------GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
              AL+          G+Q+H   L +G   D  +G+SLV++Y K  DF           
Sbjct: 109 --CALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFE---------- 156

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
                                D R +FD     + V W S++SGY  N  + E + L ++
Sbjct: 157 ---------------------DGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQ 195

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M+  GV  +  T A+VL A +    +E G QVH    K G      V +AL+  Y K  M
Sbjct: 196 MQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEM 255

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             DA  +F  + V D++  N MI  Y++ G                              
Sbjct: 256 VGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFY---------------------------- 287

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
              +E   +F  M    +++ +    + +  C+    L   +Q+   V   G +  Q I 
Sbjct: 288 ---LEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR 344

Query: 408 TSLVDFYCKC---------------------------GY-------DALALFNEMRNTGV 433
           T+L+  Y KC                           G+        A+ LF +M   GV
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGV 404

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           +P   T++ +L+      L    Q     +K  Y   P +   + ++D + + G + E+ 
Sbjct: 405 RPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESA 459

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
            +   +P + D+  WS++L G     D     K  E  I+L  E
Sbjct: 460 RVFYSIPAK-DIVAWSAMLTGLAQTRDS---EKAMEVFIQLVKE 499



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 166/426 (38%), Gaps = 93/426 (21%)

Query: 141 VLGSSLVNLYGKC------GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
            LGSSL  L  K       G   S+   +     P  F     +   +   +   A ++F
Sbjct: 2   TLGSSLRTLQNKAKITVGNGRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLF 61

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           D T       +N ++  +  NN D EAL LF  +  +G+  D  TL+  L  C  L    
Sbjct: 62  DETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQV 121

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G+QVH  + K G ++DV V ++L+D Y               +K  D            
Sbjct: 122 VGRQVHCQSLKSGFLEDVSVGTSLVDMY---------------MKTED------------ 154

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
                ED + IF  M  K+++SW S++ G ++NG   E + L   M    +  + F+ A+
Sbjct: 155 ----FEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFAT 210

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------- 417
           V+ A A+ S +E G QV A +   G +    +  +L+  Y K                  
Sbjct: 211 VLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRD 270

Query: 418 ---------GYDALA-------LFNEMRNTGVKPTIITFTAILSACD-----------HC 450
                    GY A+        +F+ MR  GVK +   F   L  C            HC
Sbjct: 271 SVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHC 330

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G+VK G ++   ++            + ++  +++   ++EA  L        +V  W++
Sbjct: 331 GVVKNGYEFAQDIR------------TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTA 378

Query: 511 ILRGCV 516
           ++ G V
Sbjct: 379 MIGGFV 384


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 180/609 (29%), Positives = 292/609 (47%), Gaps = 100/609 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            A +L  C +   + +G QLH   +  G+ L+S  P+AN LL MY +C     A  LFD 
Sbjct: 162 FACVLSVCASEAMLDLGTQLHGIAVSCGLELDS--PVANTLLAMYSKCQCLQAARKLFDT 219

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYG 124
            P+ +  SWN +I G+++ G   ++  LF  M        ++  + F     +L +L++ 
Sbjct: 220 SPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHC 279

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K+IH +I+ + +  D  L S+L+++Y K                               C
Sbjct: 280 KEIHGYIIRHAVVLDVFLKSALIDIYFK-------------------------------C 308

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             +  A+++  +++   +V+  +MISGY+ N ++ EAL  F  + +  +   + T +S+ 
Sbjct: 309 RDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIF 368

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            A + L  L  GK++HG   K  + +   V SA+LD Y+K G    AC++F+ +   D I
Sbjct: 369 PAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAI 428

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N+MIT  S  GR                               P EA++LF  M    
Sbjct: 429 CWNSMITSCSQNGR-------------------------------PGEAINLFRQMGMEG 457

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
            R D  S++  +SACAN+ +L  G+++   +    L SD    +SL+D Y KCG      
Sbjct: 458 TRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSR 517

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       + LALF+EM   G++P  +TF  I+SAC H G
Sbjct: 518 RVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAG 577

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V EG +++  M  +Y I   +EHY+C+ D+F RAG L+EA   I  MPF  D G+W ++
Sbjct: 578 QVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTL 637

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  HG+  L    ++ + +LDP N+  Y+ L+++ A +G+W K   +R IM+E+ V 
Sbjct: 638 LGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVR 697

Query: 572 KLPGCSWAD 580
           K+PG SW +
Sbjct: 698 KVPGYSWIE 706



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 217/512 (42%), Gaps = 107/512 (20%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKND 103
           MY+R G+  DA  LF  +      +WN MI GF  +G    +L  +       V P K  
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
           F + +     A   L +++ GK +H  + + GL  D  +GSSL+ L              
Sbjct: 61  FPYVVK----ACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKL-------------- 102

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
                            YA  G ++DA+ +FD      SV+WN M++GY+ N +   A+ 
Sbjct: 103 -----------------YAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIK 145

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           +F +MR + +  ++ T A VLS C+S   L+ G Q+HG A   G+  D  VA+ LL  YS
Sbjct: 146 IFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYS 205

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           K                               C  ++ A+ +F T P   L+SWN +I G
Sbjct: 206 K-------------------------------CQCLQAARKLFDTSPQSDLVSWNGIISG 234

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
             QNG   EA  LF  M    ++ D  + AS +     + SL+  +++   +    +  D
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLD 294

Query: 404 QIISTSLVDFYCKC--------------------------GY-------DALALFNEMRN 430
             + ++L+D Y KC                          GY       +AL  F  +  
Sbjct: 295 VFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQ 354

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
             +KPT +TF++I  A      +  G++   ++  +  +D +    S ++D++A+ G L+
Sbjct: 355 ERMKPTSVTFSSIFPAFAGLAALNLGKELHGSI-IKTKLDEKCHVGSAILDMYAKCGRLD 413

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
            A  +  ++  E D   W+S++  C  +G  G
Sbjct: 414 LACRVFNRIT-EKDAICWNSMITSCSQNGRPG 444



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 115/255 (45%), Gaps = 37/255 (14%)

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
           +Y   G ++DAK++F T+      +WN MI G +  G    AL  +  M    +  DK++
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------ 419
              V+ AC  + S+++G+ V   V ++GL  D  + +SL+  Y + G+            
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 420 ---------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                +A+ +F EMR++ +KP  +TF  +LS C    ++  G +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 459 WFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
               A+     +D  +   + ++ ++++  CL  A  L +  P ++D+  W+ I+ G V 
Sbjct: 181 LHGIAVSCGLELDSPVA--NTLLAMYSKCQCLQAARKLFDTSP-QSDLVSWNGIISGYVQ 237

Query: 518 HGDKGLGRKVAERMI 532
           +G  G    +   MI
Sbjct: 238 NGLMGEAEHLFRGMI 252


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/469 (31%), Positives = 252/469 (53%), Gaps = 37/469 (7%)

Query: 146 LVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           L++L  +C +    +Q    +L+   + D+  LS  I   ++ G  + +  +F   T   
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
             ++N++I    +    TEA+LL++++  + +  D  +L  VL A   L  +  G+Q+H 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
            A   G++ D+ V +AL+  YS  G  S+A +LF  +   D    N M+  Y+  G +++
Sbjct: 164 QAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDN 223

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+H+F  MP +++ISW ++I G +Q   P EA+ +F  M   ++  D+ ++ + +SACA+
Sbjct: 224 ARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAH 283

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------- 418
           + +LELGE +   +   GL     ++ +L+D Y KCG                       
Sbjct: 284 LGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSM 343

Query: 419 ----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
                      +AL +F+ M    +KP  ITF AILSAC H GLV+ G+ +F  M  +Y 
Sbjct: 344 IDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYG 403

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
           I P+I+HY CM+DL  RAG L EA  L+  MPFEA+  +W S+L     HGD  LG++  
Sbjct: 404 IKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQAL 463

Query: 529 ERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           + +I+++P N+  Y  LS+I+AT  +W ++ ++R +MR+  V K+PG S
Sbjct: 464 QHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGS 512


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/469 (31%), Positives = 252/469 (53%), Gaps = 37/469 (7%)

Query: 146 LVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           L++L  +C +    +Q    +L+   + D+  LS  I   ++ G  + +  +F   T   
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
             ++N++I    +    TEA+LL++++  + +  D  +L  VL A   L  +  G+Q+H 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
            A   G++ D+ V +AL+  YS  G  S+A +LF  +   D    N M+  Y+  G +++
Sbjct: 164 QAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDN 223

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+H+F  MP +++ISW ++I G +Q   P EA+ +F  M   ++  D+ ++ + +SACA+
Sbjct: 224 ARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAH 283

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------- 418
           + +LELGE +   +   GL     ++ +L+D Y KCG                       
Sbjct: 284 LGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSM 343

Query: 419 ----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
                      +AL +F+ M    +KP  ITF AILSAC H GLV+ G+ +F  M  +Y 
Sbjct: 344 IDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYG 403

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
           I P+I+HY CM+DL  RAG L EA  L+  MPFEA+  +W S+L     HGD  LG++  
Sbjct: 404 IKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQAL 463

Query: 529 ERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           + +I+++P N+  Y  LS+I+AT  +W ++ ++R +MR+  V K+PG S
Sbjct: 464 QHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGS 512


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 184/602 (30%), Positives = 280/602 (46%), Gaps = 96/602 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +   + +H H LK     S + +    + MY++CG   DA  +F EMP R
Sbjct: 59  VLKACAKLSHLRNSQIIHAHVLKS-CFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVR 117

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +  SWNAM+ GF + G  ++   L            +M +SG     +  L         
Sbjct: 118 DIASWNAMLLGFAQSGFLDRLSCLLR----------HMRLSGIRPDAVTVL--------- 158

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
                L  DS+L    +   G    F      + +    D    + LI+ Y+ CG +  A
Sbjct: 159 -----LLIDSILRVKSLTSLGAVYSFG-----IRIGVHMDVSVANTLIAAYSKCGNLCSA 208

Query: 191 RRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
             +FD       S V WNSMI+ Y +  +  +A+  +  M   G   D ST+ ++LS+C 
Sbjct: 209 ETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCM 268

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
               L HG  VH H  K+G   DV V                               +NT
Sbjct: 269 QPKALFHGLLVHSHGVKLGCDSDVCV-------------------------------VNT 297

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +I +YS CG +  A+ +F  M +K+ +SW  MI   ++ G   EA+ LF  M     + D
Sbjct: 298 LICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPD 357

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
             ++ ++IS C    +LELG+ +       GL  + ++  +L+D Y KCG          
Sbjct: 358 LVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFY 417

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   DAL LF  M   G+KP  ITF A+L AC H GLV+ 
Sbjct: 418 TMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVER 477

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G + F+ M  +Y I+P I+HYSCMVDL  R G L EA+ +I+ MPFE D G+WS++L  C
Sbjct: 478 GLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSAC 537

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             HG   +G+ V+E++ EL+P+ A  Y+++++I+A++  WE  + IR  M+   V K PG
Sbjct: 538 KLHGKMEMGKYVSEQLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPG 597

Query: 576 CS 577
            S
Sbjct: 598 QS 599



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 123/541 (22%), Positives = 217/541 (40%), Gaps = 103/541 (19%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIH 128
           F+WN+     +  GH + +L LF  M Q     N+ ++  ++   AK  L+ L   + IH
Sbjct: 19  FTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAK--LSHLRNSQIIH 76

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           +H+L       S   S++                         F  +A +  Y  CG++ 
Sbjct: 77  AHVL------KSCFQSNI-------------------------FVQTATVDMYVKCGRLE 105

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           DA  VF          WN+M+ G+  +        L   MR +G+  DA T+  ++ +  
Sbjct: 106 DAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSIL 165

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            +  L     V+    ++GV  DV VA+ L+  YSK G    A  LF E        +N+
Sbjct: 166 RVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDE--------INS 217

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
            +                     +S++SWNSMI   +     ++A++ +  M       D
Sbjct: 218 GL---------------------RSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPD 256

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
             ++ +++S+C    +L  G  V +    +G DSD  +  +L+  Y KCG          
Sbjct: 257 ISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFN 316

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +A+ LFN M   G KP ++T  A++S C   G ++ 
Sbjct: 317 GMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALEL 376

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G KW D       +   +   + ++D++A+ G  N+A  L   M     V  W++++  C
Sbjct: 377 G-KWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVS-WTTMITAC 434

Query: 516 VAHGDKGLGRKVAERMIELD-PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
             +GD     ++   M+E+    N   ++ +    A  G  E+     ++M +K+ G  P
Sbjct: 435 ALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKY-GINP 493

Query: 575 G 575
           G
Sbjct: 494 G 494



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 152/327 (46%), Gaps = 40/327 (12%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I  +  LL SC    ++  G  +H H +K G  +S + + N L+ MY +CG+   A  LF
Sbjct: 257 ISTILNLLSSCMQPKALFHGLLVHSHGVKLGC-DSDVCVVNTLICMYSKCGDVHSARFLF 315

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNM-LISGFAKADLAA 120
           + M  + C SW  MI  + + G+  +++ LFN M    +K D    + LISG  +    A
Sbjct: 316 NGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQT--GA 373

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           LE GK I ++ + NGL  + V+ ++L+++Y KCG F                        
Sbjct: 374 LELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGF------------------------ 409

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
                  NDA+ +F    + + V W +MI+    N +  +AL LF  M   G+  +  T 
Sbjct: 410 -------NDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITF 462

Query: 241 ASVLSACSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            +VL AC+  G +E G +       K G+   +   S ++D   ++G   +A ++   + 
Sbjct: 463 LAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMP 522

Query: 300 VY-DTILLNTMITVYSSCGRIEDAKHI 325
              D+ + + +++     G++E  K++
Sbjct: 523 FEPDSGIWSALLSACKLHGKMEMGKYV 549



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
           +L +WNS    L   G    AL LF  M +  +  +  +   V+ ACA +S L   + + 
Sbjct: 17  TLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIH 76

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM 428
           A V      S+  + T+ VD Y KCG   DA  +F EM
Sbjct: 77  AHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEM 114


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 181/605 (29%), Positives = 292/605 (48%), Gaps = 103/605 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  G+++H   +K G   S + + N LL  Y  CG   DA  +FDEMP +
Sbjct: 47  VLKACADAFEVRKGREVHGSVVKLG-FESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEK 105

Query: 71  NCFSWNAMIEGFMKLG-HKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY---GKQ 126
           +  SWN MI  F   G H   +L +F +M  +     ++ IS F    L  LE+   G++
Sbjct: 106 DLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPV-LVELEFFKAGRE 164

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H              GSS+                  M  E D F  ++LI  YA  G 
Sbjct: 165 VH--------------GSSI-----------------RMGLESDIFIANSLIDMYAKSGH 193

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
             +A  VF +    + V WN+MI+ +  N  +  A+ L  +M+  G L ++ T  +VL A
Sbjct: 194 STEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPA 253

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ +G +  GK++H  +  +G   D+ V++AL D Y+K                      
Sbjct: 254 CARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAK---------------------- 291

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                     G ++ A+++F T   +  +S+N +IVG SQ     E+L LF  M  + L+
Sbjct: 292 ---------SGHLKLARNVFDT-SLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLK 341

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--- 423
            D  S    +SACAN+++++ G+++   +          ++ SL+DFY KCG   LA   
Sbjct: 342 QDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNI 401

Query: 424 ------------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                         LF  MR   V+   ++F A+LSAC H GL+
Sbjct: 402 FDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLL 461

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           ++G+K+FD +K +  I+P   HY+CMVDL  RAG + EA  LI+ +P   D  +W ++L 
Sbjct: 462 EKGRKYFDELKAR-GIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLG 520

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  +G+  L    AE + EL PE++  Y  LS+++A +G W++++ IR++M+ + V K 
Sbjct: 521 ACRIYGNLELAAWAAEHLFELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKS 580

Query: 574 PGCSW 578
           PGCSW
Sbjct: 581 PGCSW 585



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 123/509 (24%), Positives = 232/509 (45%), Gaps = 82/509 (16%)

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ-- 161
           F WN LI G++   +A +  G ++++ ++  G+  D     +   +   C D     +  
Sbjct: 8   FLWNTLIRGYS---IAGVGGGLEVYNQMVRIGVRPDD---HTFPFVLKACADAFEVRKGR 61

Query: 162 -----VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
                V+ +  E D F  + L+S Y NCG + DA RVFD   +   V WN+MI  +  N 
Sbjct: 62  EVHGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNG 121

Query: 217 -EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
               +AL +F  M   G+  ++ T++S L     L F + G++VHG + ++G+  D+ +A
Sbjct: 122 WHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIA 181

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
           ++L+D Y+K G  ++A  +F +L                      DAK++         +
Sbjct: 182 NSLIDMYAKSGHSTEASNVFYKL----------------------DAKNV---------V 210

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           SWN+MI   +QN   + A+ L   M       +  +  +V+ ACA +  +  G+++ AR 
Sbjct: 211 SWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARS 270

Query: 396 TIIGLDSDQIISTSLVDFYCKCGY--------------------------------DALA 423
             +G   D  +S +L D Y K G+                                ++L+
Sbjct: 271 IHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSLRDEVSYNILIVGHSQTSDCSESLS 330

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDL 482
           LF+EM+  G+K   ++F   LSAC +   +K+G++     ++  +HI   +   + ++D 
Sbjct: 331 LFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVA--NSLLDF 388

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACA 541
           + + G +  A N+ ++M    DV  W++++ G    G+      + E M + D E ++ +
Sbjct: 389 YTKCGRIGLARNIFDRMT-NKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVS 447

Query: 542 YIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +I + S  +  G  EK     D ++ + +
Sbjct: 448 FIAVLSACSHGGLLEKGRKYFDELKARGI 476



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 140/340 (41%), Gaps = 83/340 (24%)

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
           T++ +WN++I GY S       L ++++M R GV  D  T   VL AC+    +  G++V
Sbjct: 5   TTAFLWNTLIRGY-SIAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREV 63

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           HG   K+G   DV V + LL  Y   G   DA ++F E+   D +  NTMI V+S  G  
Sbjct: 64  HGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNG-- 121

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
                            W+             +ALD+F  M    L+ +  +++S +   
Sbjct: 122 -----------------WHYR-----------DALDMFRLMIDEGLKPNSITISSFLPVL 153

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD------------------- 420
             +   + G +V      +GL+SD  I+ SL+D Y K G+                    
Sbjct: 154 VELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWN 213

Query: 421 --------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                         A+ L  +M++ G  P  +TFT +L AC   GLV+ G++        
Sbjct: 214 AMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKE-------- 265

Query: 467 YHIDPEIEHYSCMVDLF---------ARAGCLNEAVNLIE 497
             I     H  C  DLF         A++G L  A N+ +
Sbjct: 266 --IHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFD 303


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 183/595 (30%), Positives = 287/595 (48%), Gaps = 107/595 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H   +K G L+S + I N LL +Y   G   DA L+F  M  R+  SWN+M+  ++
Sbjct: 417 GRGIHGLVVKLG-LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYV 475

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA------LEYGKQIHSHILVNGLD 137
           + G   K L    ++ +       M    FA A LAA      L   K +H+ I+V G  
Sbjct: 476 QDG---KCLDGLKILAELLQMGKVMNHVTFASA-LAACSNPECLIESKIVHALIIVAGFH 531

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
              ++G++LV +YGK G          MM E                     A++V    
Sbjct: 532 DFLIVGNALVTMYGKLG----------MMME---------------------AKKVLQTM 560

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHG 256
                V WN++I G+  N E  EA+  +  +R  G+  +  T+ SVL ACS+    L+HG
Sbjct: 561 PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHG 620

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
             +H H         +++     D Y K                      N++IT+Y+ C
Sbjct: 621 MPIHAH---------IVLTGFESDDYVK----------------------NSLITMYAKC 649

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G +  + +IF  + NKS I+WN+M+   + +G   EAL +F  M  + + +D+FS +  +
Sbjct: 650 GDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGL 709

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALAL---------- 424
           +A AN++ LE G+Q+   V  +G +SD  ++ + +D Y KCG  +D L +          
Sbjct: 710 AATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRL 769

Query: 425 ---------------------FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                                F+EM   G KP  +TF ++LSAC+H GLV EG  ++D+M
Sbjct: 770 SWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSM 829

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
             ++ + P IEH  C++DL  R+G L+ A   I++MP   +   W S+L  C  HG+  L
Sbjct: 830 TREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLEL 889

Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            RK AE ++ELDP +  AY+  S++ ATSG+WE    +R  M   ++ K P CSW
Sbjct: 890 ARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSW 944



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 225/500 (45%), Gaps = 47/500 (9%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK LH  F   G +N  +   N L+ MY + GN   A  +FDEM  RN  SW+ M+ G++
Sbjct: 113 GKALHA-FCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYV 171

Query: 84  KLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
           ++G  E+++ LF  M     + N F    LI+  +++   A E G Q+H  ++  G+  D
Sbjct: 172 RVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE-GFQVHGFVVKTGILGD 230

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
             +G++LV+ YG  G   +A ++   M + +    ++L+ GY++ G              
Sbjct: 231 VYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN------------- 277

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
                               E L ++ +MR+ GV  + +T A+V S+C  L     G QV
Sbjct: 278 ------------------PGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQV 319

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
            GH  + G  D V VA++L+  +S      +AC +F  +   D I  N MI+ Y+  G  
Sbjct: 320 LGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLC 379

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
            ++   F  M +    + ++ +  L    S ++ L     ++ L +   K  L S +  C
Sbjct: 380 RESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV---KLGLDSNVCIC 436

Query: 380 ANISSL--ELGEQVFARVTIIGLDSDQIIS-TSLVDFYCKCG--YDALALFNEMRNTGVK 434
             + +L  E G    A +    +    +IS  S++  Y + G   D L +  E+   G  
Sbjct: 437 NTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKV 496

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
              +TF + L+AC +   + E  K   A+         +   + +V ++ + G + EA  
Sbjct: 497 MNHVTFASALAACSNPECLIE-SKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKK 555

Query: 495 LIEQMPFEADVGMWSSILRG 514
           +++ MP + D   W++++ G
Sbjct: 556 VLQTMP-QPDRVTWNALIGG 574


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 188/664 (28%), Positives = 321/664 (48%), Gaps = 117/664 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            +RLL+   +     +G+Q+H   + KG     + + + L+ MY +C    DA   F E+
Sbjct: 50  FSRLLKGIASAKRFDLGEQVH-GLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEI 108

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALE 122
              N  SWNA+I GF+++   + +  L  +M  K     +D ++  L++         L 
Sbjct: 109 LEPNSVSWNALIAGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLL 168

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
             KQ+H+ +L  GL+ +  +                                +A+IS YA
Sbjct: 169 --KQVHAKVLKLGLEHEITI-------------------------------CNAMISSYA 195

Query: 183 NCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           NCG ++DA+RVFD    +  ++ WNSMI+G   + +   A  LF +M RN +  D  T  
Sbjct: 196 NCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTEMHRNWIETDIYTYT 255

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            ++SACS       GK +HG   K G+     V++AL+  Y +   P+            
Sbjct: 256 GIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQ--FPT------------ 301

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                          G ++DA  +F ++  K L+SWNS++ G SQNG   +A+  F  + 
Sbjct: 302 ---------------GVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLR 346

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
             ++ +D ++ ++V+ +C+++++L+LG+Q  A  T    +S++ +++SL+  Y KCG   
Sbjct: 347 SSNIEVDDYAFSAVLRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIE 406

Query: 419 -----------------YDA--------------LALFNEMRNTGVKPTIITFTAILSAC 447
                            ++A              L LF++M N  VK   +TFTAIL+AC
Sbjct: 407 NARKCFEQISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTAC 466

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GL++EG +  ++M+  Y I P +EHY+  VDL  RAG +N+   LIE MP   D  +
Sbjct: 467 SHTGLIQEGLELLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPMV 526

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
             + L  C A G+  +  +VA  ++E++PE+  AY+ LS +++   +WE+ + ++ +M+E
Sbjct: 527 LKTFLGVCRACGEIEMATQVANHLLEIEPEDHFAYVSLSHMYSDLKKWEEKANVKKMMKE 586

Query: 568 KHVGKLPGCSWAD----GIAFNCW-----FLDTMFLQLANFDEIKQHQSADFCDYIHGFD 618
           + V K+PG SW +      AFN           ++L + +       Q   + D  +GFD
Sbjct: 587 RGVKKVPGWSWIEIRNQVNAFNAEDRSHSLSKEIYLMIEDLT-----QEMQWLDSDNGFD 641

Query: 619 QARL 622
           QA L
Sbjct: 642 QASL 645



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 208/497 (41%), Gaps = 104/497 (20%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADL 118
           LFDEMP+R+  SWN MI G+   G  E S  LF  M +     + +S++ L+ G A A  
Sbjct: 3   LFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAK- 61

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
              + G+Q+H  ++  G + +  +GSSLV++Y KC     A      + EP+        
Sbjct: 62  -RFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPN-------- 112

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDA 237
                                  SV WN++I+G++   +   A  L   M  +  V  D 
Sbjct: 113 -----------------------SVSWNALIAGFVQVRDTKTAFWLLGLMEMKAAVTMDD 149

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T A +L+      F    KQVH    K+G+  ++ + +A++ +Y+  G+ SDA ++F  
Sbjct: 150 GTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLEHEITICNAMISSYANCGLVSDAKRVFDG 209

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           L                                +K LISWNSMI GLS++     A +LF
Sbjct: 210 LG------------------------------GSKDLISWNSMIAGLSKHEQKESAFELF 239

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK- 416
             M++  +  D ++   ++SAC+       G+ +   V   GL+    +S +L+  Y + 
Sbjct: 240 TEMHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQF 299

Query: 417 ---------------------------CGY-------DALALFNEMRNTGVKPTIITFTA 442
                                       G+       DA+  F  +R++ ++     F+A
Sbjct: 300 PTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSA 359

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L +C     ++ GQ+   A+  +   +      S ++ ++++ G +  A    EQ+  +
Sbjct: 360 VLRSCSDLATLQLGQQ-THALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISSK 418

Query: 503 ADVGMWSSILRGCVAHG 519
            +   W++++ G   HG
Sbjct: 419 HNTIAWNAMILGYAQHG 435



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 158/334 (47%), Gaps = 43/334 (12%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR--CGNPT 58
           ++T I     ++ +C+       GK LH   +KKG L     ++N L+ MY++   G   
Sbjct: 247 IETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKG-LEQVTSVSNALISMYIQFPTGVMK 305

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFA 114
           DAL LF+ +  ++  SWN+++ GF + G  E +++ F  +   N    D++++ ++   +
Sbjct: 306 DALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVLR--S 363

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            +DLA L+ G+Q H+    +  + +  + SSL+ +Y KC                     
Sbjct: 364 CSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKC--------------------- 402

Query: 175 SALISGYANCGKMNDARRVFDR-TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                     G + +AR+ F++ ++  +++ WN+MI GY  +     +L LF +M    V
Sbjct: 403 ----------GVIENARKCFEQISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNV 452

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV-ASALLDTYSKRGMPSDAC 292
             D  T  ++L+ACS  G ++ G ++      V  I   +   +A +D   + G+ +   
Sbjct: 453 KLDHVTFTAILTACSHTGLIQEGLELLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVK 512

Query: 293 KLFSELKVY-DTILLNTMITVYSSCGRIEDAKHI 325
           +L   + +  D ++L T + V  +CG IE A  +
Sbjct: 513 ELIESMPLNPDPMVLKTFLGVCRACGEIEMATQV 546



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 149/369 (40%), Gaps = 78/369 (21%)

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
           R+FD      SV WN+MISGY S  +   +  LF  M+R G   D  + + +L   +S  
Sbjct: 2   RLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAK 61

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
             + G+QVHG   K G   +V V S+L+D Y+K                           
Sbjct: 62  RFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAK--------------------------- 94

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKF 370
               C R+EDA   F  +   + +SWN++I G  Q      A  L   M  K  + MD  
Sbjct: 95  ----CERVEDAFGAFMEILEPNSVSWNALIAGFVQVRDTKTAFWLLGLMEMKAAVTMDDG 150

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDAL 422
           + A +++   +     L +QV A+V  +GL+ +  I  +++  Y  CG        +D L
Sbjct: 151 TFAPLLTLLDDPMFCNLLKQVHAKVLKLGLEHEITICNAMISSYANCGLVSDAKRVFDGL 210

Query: 423 A--------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                      LF EM    ++  I T+T I+SAC       E 
Sbjct: 211 GGSKDLISWNSMIAGLSKHEQKESAFELFTEMHRNWIETDIYTYTGIVSACS-----GEE 265

Query: 457 QKWFDAMKWQYHIDPEIEHYS----CMVDLFAR--AGCLNEAVNLIEQMPFEADVGMWSS 510
            + F        I   +E  +     ++ ++ +   G + +A++L E +    D+  W+S
Sbjct: 266 HQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPTGVMKDALSLFESLK-PKDLVSWNS 324

Query: 511 ILRGCVAHG 519
           I+ G   +G
Sbjct: 325 IMTGFSQNG 333


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 175/594 (29%), Positives = 281/594 (47%), Gaps = 98/594 (16%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            +G+ +H   LK G  ++T  I   L+  Y   G  + A  +FDE+  ++  SW  MI  
Sbjct: 63  ELGRIVHGCVLKVGYGSNTF-IGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFD 139
           + +     ++L+ F+ M        N   +G  KA   L   + GK +H  +L    + D
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
             +G  L+ LY +                               CG  +DA R F     
Sbjct: 182 LYVGVGLLELYTR-------------------------------CGDNDDAWRAFGDMPK 210

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
              + W+ MIS +  + +  +AL +F +MRR  V+ +  T +SVL A + +  L+  K +
Sbjct: 211 NDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTI 270

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           HGHA K G+  DV V++AL+  Y+K                               CG I
Sbjct: 271 HGHALKAGLSTDVFVSNALMACYAK-------------------------------CGCI 299

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           E +  +F  + +++ +SWN++IV   Q G    AL LF NM +  ++  + + +S++ AC
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------- 418
           A +++LELG QV           D  +  +L+D Y KCG                     
Sbjct: 360 ATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWN 419

Query: 419 ------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        +A+ +FN M+ T  KP  +TF  +LSAC + G + EG+++F +MK  
Sbjct: 420 AIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQD 479

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           Y I+P +EHY+CMV L  R+G L++AV  IE +PFE  V +W ++L  CV H D  LGR 
Sbjct: 480 YGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRI 539

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            A+R++EL+P +  +++ LS+I+A +  W   + +R  M+ K V K PG SW +
Sbjct: 540 SAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIE 593



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 200/446 (44%), Gaps = 73/446 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C    +   GK +H   LK       L +   LL++Y RCG+  DA   F +M
Sbjct: 150 FAGVLKACLGLQNFDAGKTVHCSVLKTN-YERDLYVGVGLLELYTRCGDNDDAWRAFGDM 208

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
           P+ +   W+ MI  F + G  EK+L++F  M +     N F+++ ++   A AD+ +L+ 
Sbjct: 209 PKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQ--ASADIESLDL 266

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            K IH H L  GL  D  + ++L+  Y KCG                  C+         
Sbjct: 267 SKTIHGHALKAGLSTDVFVSNALMACYAKCG------------------CI--------- 299

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                 +  +F+  +D + V WN++I  Y+   +   AL LF  M R  V     T +S+
Sbjct: 300 ----EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSI 355

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L AC++L  LE G QVH    K     DV V +AL+D Y+K G   DA  +F  L + D 
Sbjct: 356 LRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDK 415

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                                          +SWN++I G S +G  +EA+ +F  M + 
Sbjct: 416 -------------------------------VSWNAIICGYSMHGLGVEAIKMFNLMKET 444

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCG-YDA 421
             + D+ +   V+SAC+N   L+ G+Q F  +    G++      T +V    + G  D 
Sbjct: 445 KCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQ 504

Query: 422 LALFNEMRNTGVKPTIITFTAILSAC 447
              F E  +   +P+++ + A+L AC
Sbjct: 505 AVKFIE--DIPFEPSVMIWRALLGAC 528



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 218/493 (44%), Gaps = 78/493 (15%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKAD--LAALEYGKQIHS--HILVNGLDFDSVLGSSLVNL 149
           +F+ MP++N  S+  LI G+A+++  + A E   ++H   H L N   F +VL   +   
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHEL-NPFVFTTVLKLLVSME 60

Query: 150 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
           + + G       VL +    + F  +ALI  Y+  G ++ AR VFD  +    V W  MI
Sbjct: 61  WAELGRIVHGC-VLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMI 119

Query: 210 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
           + Y  N+  +EAL  F +MR  G   +  T A VL AC  L   + GK VH    K    
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYE 179

Query: 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
            D+ V   LL+ Y++ G   DA + F ++   D I  + MI+ ++               
Sbjct: 180 RDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFA--------------- 224

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
                           Q+G   +AL++FC M +  +  ++F+ +SV+ A A+I SL+L +
Sbjct: 225 ----------------QSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSK 268

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKC-------------------------------- 417
            +       GL +D  +S +L+  Y KC                                
Sbjct: 269 TIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLG 328

Query: 418 -GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG-QKWFDAMKWQYHIDPEIEH 475
            G  AL+LF+ M    V+ T +T+++IL AC     ++ G Q      K  Y  D  + +
Sbjct: 329 DGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGN 388

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
              ++D++A+ G + +A  + + +     V  W++I+ G   H   GLG + A +M  L 
Sbjct: 389 --ALIDMYAKCGSIKDARFMFDMLDLRDKVS-WNAIICGYSMH---GLGVE-AIKMFNLM 441

Query: 536 PENACAYIQLSSI 548
            E  C   +L+ +
Sbjct: 442 KETKCKPDELTFV 454



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + Y + +L++C T  ++ +G Q+H     K I    + + N L+ MY +CG+  DA  
Sbjct: 348 TEVTY-SSILRACATLAALELGLQVHC-LTAKTIYGQDVAVGNALIDMYAKCGSIKDARF 405

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAA 120
           +FD +  R+  SWNA+I G+   G   +++++FN+M +       +   G   A  +   
Sbjct: 406 MFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGR 465

Query: 121 LEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
           L+ GKQ  + +  + G++      + +V L G+ G+ + A + +  +  EP      AL+
Sbjct: 466 LDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALL 525

Query: 179 SG 180
             
Sbjct: 526 GA 527


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 160/544 (29%), Positives = 276/544 (50%), Gaps = 78/544 (14%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS 129
           ++ +++N  I    + G+   + QLF+ MP ++  SWN +I+G                 
Sbjct: 45  QDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITG----------------- 87

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
                               Y K G F+ + ++  +M   +    +++I+G     ++++
Sbjct: 88  --------------------YWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDE 127

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A + F      ++  WN+MISG +  +   EA  LF +M R  V+    +  +++   + 
Sbjct: 128 AWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVI----SYTAMVDGYAK 183

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           +G +E  + +     +     +V+  + ++  Y + G   +A  LF ++   + + +  M
Sbjct: 184 IGEIEQARALFNCMPQ----KNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAM 239

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT Y   G+ + AK +F  +P + L SWN+MI G +QNGS  EAL L   M K+ ++ D 
Sbjct: 240 ITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDH 299

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            +L SV++AC++++SL+ G +    V   G +S   I  +L+  YCKCG           
Sbjct: 300 STLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQ 359

Query: 419 ---------------------YD-ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                YD ALA F EMR+  V+P  ITF ++LSAC H G V E 
Sbjct: 360 IDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHES 419

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             WF++M   Y I P  EH++C+VD+ +R G + +A  +I++MPFEAD G+W ++L  C 
Sbjct: 420 LNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACH 479

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  LG   A++++EL+P+N+ AY+ LS+I+A +G W + + +R +MRE+ V K P  
Sbjct: 480 VHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAY 539

Query: 577 SWAD 580
           SW +
Sbjct: 540 SWME 543



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 131/285 (45%), Gaps = 20/285 (7%)

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
           F    +Q H  + K+    DV   +  +   ++ G    A +LF E+   DT+  N++IT
Sbjct: 27  FHSFNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIIT 86

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
            Y   G  +++K +F  MP K+++SWNSMI G  ++    EA   F  M +     +  S
Sbjct: 87  GYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQ----RNTAS 142

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMR 429
             ++IS       +E   ++F  +       + I  T++VD Y K G    A ALFN M 
Sbjct: 143 WNAMISGLVRYDRVEEASRLFEEMP----RRNVISYTAMVDGYAKIGEIEQARALFNCMP 198

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
              V    +++T ++S     G   E +  F+ M      D  I   + M+  + + G  
Sbjct: 199 QKNV----VSWTVMISGYVENGKFDEAENLFEQMP-----DKNIVAMTAMITGYCKEGKT 249

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           ++A  L +Q+P   D+  W++++ G   +G      K+  +M+++
Sbjct: 250 DKAKILFDQIPCR-DLASWNAMITGYAQNGSGEEALKLHSQMLKM 293



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C++  S+  G++ H+  LK G   S + I N L+ MY +CG+  D+ L F ++
Sbjct: 302 LISVLTACSSLASLQEGRKTHVLVLKSG-YESRISICNALITMYCKCGSILDSELAFRQI 360

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
              +  SWNAMI  F + G  +++L  F  M
Sbjct: 361 DHPDVVSWNAMIAAFARHGFYDRALASFGEM 391


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 161/529 (30%), Positives = 273/529 (51%), Gaps = 78/529 (14%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           F+ K I   T+     LL  Y + G   +A  +F+ M  RN  SWNAMI G+++ G  + 
Sbjct: 96  FVGKNIRTWTI-----LLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKN 150

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
           + +LF+ MP+KN  SWN +++G+         Y       +     + +SV    +++ Y
Sbjct: 151 ARKLFDEMPEKNVASWNSVVTGYCHC------YRMSEARELFDQMPERNSVSWMVMISGY 204

Query: 151 GKCGDFNSANQV-LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD-TSSVMWNSM 208
               D+  A  V + M +  +++  + +I+ +A CG+++DA ++++R  + T+S  W +M
Sbjct: 205 VHISDYWEAWDVFVKMCRTRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAM 264

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           I+G++ N E  EAL L  ++ R+G +   S+  S LSAC+++G +E G+ +H  A K G 
Sbjct: 265 IAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTG- 323

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
                                  C+       +++ ++N +I++Y+ CG +ED  H+FRT
Sbjct: 324 -----------------------CQ-------FNSYVMNGLISMYAKCGNVEDGSHVFRT 353

Query: 329 --MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             MP + ++SW ++I    Q G    ALDLF +M    ++ ++ ++ S++SAC N+ +++
Sbjct: 354 IRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIK 413

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------- 419
           LGEQ  A +  +G D+   +  SL+  Y KCGY                           
Sbjct: 414 LGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFCVFEEMPEHDLITWNAVLVGCAQ 473

Query: 420 -----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                +A+ +F +M   G+ P  ++F  +L AC H GLV EG   F++M  +Y I P + 
Sbjct: 474 NGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVY 533

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
           HY+CMVDL  RAG L+EA  LIE MP + D  +W ++L  C  H +  L
Sbjct: 534 HYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNNEL 582



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 129/533 (24%), Positives = 237/533 (44%), Gaps = 92/533 (17%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           ++  P+  R L  + RC +     L   E P+ + F  N  I+   +LG  E++ ++FN 
Sbjct: 8   STPYPVIRRFLCTF-RCISTLS--LPIQETPQTHLFQCNTRIQELGRLGRVEEARRVFNE 64

Query: 98  MPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
           M Q++  SWN +I+G+++        GK   + +L     FD+ +G ++           
Sbjct: 65  MIQRDVVSWNSMINGYSQN-------GKVDEARLL-----FDAFVGKNIRTW-------- 104

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
                            + L++GYA  G++ +AR VF+  T+ + V WN+MISGY+ N +
Sbjct: 105 -----------------TILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGD 147

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
              A  LF +M    V    ++  SV++       +   +++     +   +  +++ S 
Sbjct: 148 LKNARKLFDEMPEKNV----ASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISG 203

Query: 278 LL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS- 333
            +   D +    +    C+  +E          TMI  ++ CGR++DA  ++  +P ++ 
Sbjct: 204 YVHISDYWEAWDVFVKMCRTRNEYS------WTTMIAAFAQCGRLDDAIQLYERVPEQTN 257

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
             SW +MI G  QN    EAL+L   +++        S  S +SACANI  +E+G  + +
Sbjct: 258 SASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHS 317

Query: 394 RVTIIGLDSDQIISTSLVDFYCKC-----------------------------------G 418
                G   +  +   L+  Y KC                                   G
Sbjct: 318 LAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHG 377

Query: 419 YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
             AL LF +M   G+KP  +T T++LSAC + G +K G++ F A+ ++   D  +   + 
Sbjct: 378 EVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ-FHALIFKLGFDTFLFVGNS 436

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           ++ ++ + G   +   + E+MP E D+  W+++L GC  +G      K+ E+M
Sbjct: 437 LITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGCAQNGLGKEAIKIFEQM 487



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 66/292 (22%)

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           LG +E  ++V     +     DV+  +++++ YS+ G   +A  LF      +      +
Sbjct: 52  LGRVEEARRVFNEMIQ----RDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTIL 107

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           +T Y+  GRIE+A+ +F +M  ++++SWN+MI G  QNG    A  LF  M +       
Sbjct: 108 LTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPE------- 160

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNE 427
                      N++S                        S+V  YC C    +A  LF++
Sbjct: 161 ----------KNVASW----------------------NSVVTGYCHCYRMSEARELFDQ 188

Query: 428 M--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM---KWQYHIDPEIEHYSCMVDL 482
           M  RN+      +++  ++S   H     E    F  M   + +Y        ++ M+  
Sbjct: 189 MPERNS------VSWMVMISGYVHISDYWEAWDVFVKMCRTRNEY-------SWTTMIAA 235

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           FA+ G L++A+ L E++P + +   W++++ G V + +    R+  E +IEL
Sbjct: 236 FAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEES---REALELLIEL 284


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 176/615 (28%), Positives = 288/615 (46%), Gaps = 110/615 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C     +   + LH H +K G       +A  L+ +YMRC +  DA  LFD MP +
Sbjct: 82  LLHRCVEAGGLGAARALHGHMVKTGTAADMF-VATSLVNVYMRCASSRDARRLFDGMPDK 140

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIH 128
           N  +W A+I G         +L++F  M +   +  +  + G   A  AA  ++ G+Q+H
Sbjct: 141 NVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVH 200

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            + +  G D  + +G+SL  LY K GD  S                              
Sbjct: 201 GYSIKYGADTITSMGNSLCRLYCKSGDLESG----------------------------- 231

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTE-ALLLFHKMRRNGVLEDASTLASVLSAC 247
              R F  T D + + W +MIS    +    +  L LF  M   GV+ +  TL SV+S C
Sbjct: 232 --LRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLC 289

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
            +   +  GKQV     KVG   ++ V                                N
Sbjct: 290 GARLDMSLGKQVQAFCYKVGCEANLPVK-------------------------------N 318

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-----------NGSPIEALDL 356
           + + +Y   G  ++A  +F  M + S+I+WN+MI G +Q                +AL L
Sbjct: 319 STMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKL 378

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F ++ + +L+ D F+ +S++S C+ + +LE GEQ+ A     G  SD +++++LV+ Y K
Sbjct: 379 FRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNK 438

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                  DA+ LF +M  +G +P  ITF ++
Sbjct: 439 CGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSL 498

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC + GLV+E +++FD M+ +YHI+P ++HY CMVD+F R G L++A + I++  FE 
Sbjct: 499 LSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEP 558

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           +  +WSS++ GC +HG+  L    A+R++EL P+    Y+ L +++ ++G W   + +R 
Sbjct: 559 NEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARVRK 618

Query: 564 IMREKHVGKLPGCSW 578
           + + + VG L   SW
Sbjct: 619 LAKHEDVGVLRDRSW 633



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 211/459 (45%), Gaps = 60/459 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    I +G+Q+H + +K G  ++   + N L ++Y + G+    L  F   
Sbjct: 180 LGGMLSACSAARRIDLGQQVHGYSIKYGA-DTITSMGNSLCRLYCKSGDLESGLRAFKGT 238

Query: 68  PRRNCFSWNAMI------EGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAK 115
           P +N  +W  MI      E ++ LG     L LF       VMP +   +  M + G A+
Sbjct: 239 PDKNVITWTTMISSCAEDENYLDLG-----LSLFLDMLEGGVMPNEFTLTSVMSLCG-AR 292

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
            D++    GKQ+ +     G + +  + +S + LY + G+ + A ++   M        +
Sbjct: 293 LDMS---LGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWN 349

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           A+ISGYA         ++ D   D      ++   G+       +AL LF  + R+ +  
Sbjct: 350 AMISGYA---------QIMDSAKDD----LHARSRGF-------QALKLFRDLVRSELKP 389

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  T +S+LS CS++  LE G+Q+H +  K G + DV+V SAL++ Y+K G    A K F
Sbjct: 390 DLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAF 449

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGS 349
            E+     +   +MI+ YS  GR +DA  +F  M      PN+  I++ S++   S  G 
Sbjct: 450 VEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNE--ITFVSLLSACSYAGL 507

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVIS--ACANISSLELG--EQVFARVTIIGLDSDQI 405
             EA   F      D+  +++ +  ++    C     + LG  +  F+ +   G + ++ 
Sbjct: 508 VEEAERYF------DMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEA 561

Query: 406 ISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAIL 444
           I +SLV      G   LA +   R   +KP +I    +L
Sbjct: 562 IWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLL 600



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 143/361 (39%), Gaps = 75/361 (20%)

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS-----VLSAC 247
            FD+ T        ++ +G + +      L     M   G+L D  T+ S     +L  C
Sbjct: 30  AFDKGTSYQRSSAQALENGRLEHESPPRPLDAQEAM---GMLRDGQTVQSAMYVPLLHRC 86

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
              G L   + +HGH  K G   D+ VA++L                             
Sbjct: 87  VEAGGLGAARALHGHMVKTGTAADMFVATSL----------------------------- 117

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
             + VY  C    DA+ +F  MP+K++++W ++I G + N  P  AL++F  M +L    
Sbjct: 118 --VNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYP 175

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK----------- 416
             ++L  ++SAC+    ++LG+QV       G D+   +  SL   YCK           
Sbjct: 176 SHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAF 235

Query: 417 -----------------CGYD------ALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                            C  D       L+LF +M   GV P   T T+++S C    L 
Sbjct: 236 KGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCG-ARLD 294

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
               K   A  ++   +  +   +  + L+ R G  +EA+ L E+M   + +  W++++ 
Sbjct: 295 MSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMD-SSSIITWNAMIS 353

Query: 514 G 514
           G
Sbjct: 354 G 354


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 171/609 (28%), Positives = 292/609 (47%), Gaps = 102/609 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L++C    S+  G  +H    K GI    + + N LL MY +     D   +FD+M
Sbjct: 278 MSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI-VNNGLLSMYCKFNGLIDGRRIFDKM 336

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML-ISGFAKA--DLAALEYG 124
             R+  SWN MI G+ ++G  E+S++LF  M   N F  ++L I+   +A   L  LE+G
Sbjct: 337 VLRDAVSWNTMICGYSQVGLYEESIKLF--MEMVNQFKPDLLTITSILQACGHLGDLEFG 394

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K +H +++ +G + D+   + L+N+Y K                               C
Sbjct: 395 KYVHDYMITSGYECDTTASNILINMYAK-------------------------------C 423

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G +  ++ VF       SV WNSMI+ YI N    EA+ LF KM +  V  D+ T   +L
Sbjct: 424 GNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLL 482

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S  + LG L  GK++H    K+G   +++V+                             
Sbjct: 483 SMSTQLGDLXLGKELHCDLAKMGFNSNIVVS----------------------------- 513

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             NT++ +Y+ CG + D+  +F  M  + +I+WN++I     +      L +   M    
Sbjct: 514 --NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEG 571

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           +  D  ++ S++  C+ +++   G+++   +  +GL+SD  +   L++ Y KCG      
Sbjct: 572 VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSF 631

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                        A+  F EM   G+ P  + F AI+ AC H G
Sbjct: 632 QVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSG 691

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV+EG  +F  MK  Y I+P IEHY+C+VDL +R+  L++A + I  MP + D  +W ++
Sbjct: 692 LVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGAL 751

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C   GD  + ++V+ER+IEL+P++   Y+ +S+++A  G+W++   IR  ++ + + 
Sbjct: 752 LSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLK 811

Query: 572 KLPGCSWAD 580
           K PGCSW +
Sbjct: 812 KDPGCSWME 820



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 141/563 (25%), Positives = 247/563 (43%), Gaps = 112/563 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-E 66
           ++R L S  T   +H   +LH   +  G+ +S +  + +L+  Y    +PT +  +F   
Sbjct: 78  ISRALASAATTTQLH---KLHSLIITLGLHHSVI-FSAKLIAKYAHFRDPTSSFSVFRLA 133

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKNDFSWNMLISGFAKADLAALE 122
            P  N + WN++I      G   ++L L++    +  Q + +++  +I+  A A L   E
Sbjct: 134 SPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVIN--ACAGLLDFE 191

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
             K IH  +L  G   D  +G++L+++Y +  D                           
Sbjct: 192 MAKSIHDRVLXMGFGSDLYIGNALIDMYCRFND--------------------------- 224

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
               ++ AR+VF+       V WNS+ISGY +N    EAL ++++ R  GV+ D+ T++S
Sbjct: 225 ----LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSS 280

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL AC  LG +E G  +HG   K+G+  DVIV + LL  Y K     D  ++F ++ + D
Sbjct: 281 VLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRD 340

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            +  NTMI  YS  G  E++  +F  M N+                              
Sbjct: 341 AVSWNTMICGYSQVGLYEESIKLFMEMVNQ------------------------------ 370

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
              + D  ++ S++ AC ++  LE G+ V   +   G + D   S  L++ Y KCG    
Sbjct: 371 --FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 428

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +A+ LF  M+ T VKP  +T+  +LS    
Sbjct: 429 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQ 487

Query: 450 CGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
            G +  G++   D  K  ++ +  + +   +VD++A+ G + +++ + E M    D+  W
Sbjct: 488 LGDLXLGKELHCDLAKMGFNSNIVVSN--TLVDMYAKCGEMGDSLKVFENMK-ARDIITW 544

Query: 509 SSILRGCVAHGDKGLGRKVAERM 531
           ++I+  CV   D  LG ++  RM
Sbjct: 545 NTIIASCVHSEDCNLGLRMISRM 567



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 140/564 (24%), Positives = 247/564 (43%), Gaps = 113/564 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C       + K +H   L  G   S L I N L+ MY R  +   A  +F+EMP R
Sbjct: 180 VINACAGLLDFEMAKSIHDRVLXMG-FGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR 238

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  SWN++I G+   G+  ++L+++       V+P     S+ M     A   L ++E G
Sbjct: 239 DVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPD----SYTMSSVLRACGGLGSVEEG 294

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
             IH  I   G+  D ++ + L+++Y K   FN                           
Sbjct: 295 DIIHGLIEKIGIKKDVIVNNGLLSMYCK---FNG-------------------------- 325

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             + D RR+FD+     +V WN+MI GY       E++ LF +M  N    D  T+ S+L
Sbjct: 326 --LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSIL 382

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC  LG LE GK VH +    G   D   ++ L++ Y+K G    + ++FS +K  D++
Sbjct: 383 QACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSV 442

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N+MI VY                                QNGS  EA+ LF  M K D
Sbjct: 443 SWNSMINVY-------------------------------IQNGSFDEAMKLF-KMMKTD 470

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DAL 422
           ++ D  +   ++S    +  L LG+++   +  +G +S+ ++S +LVD Y KCG   D+L
Sbjct: 471 VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSL 530

Query: 423 ALF-------------------------------NEMRNTGVKPTIITFTAILSACDHCG 451
            +F                               + MR  GV P + T  +IL  C    
Sbjct: 531 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLA 590

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
             ++G++    + ++  ++ ++   + +++++++ G L  +  + + M  + DV  W+++
Sbjct: 591 AKRQGKEIHGCI-FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTAL 648

Query: 512 LRGCVAHGDKGLGRKVAERMIELD 535
           +  C  +G+   G+K      E++
Sbjct: 649 ISACGMYGE---GKKAVRAFGEME 669


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 181/605 (29%), Positives = 295/605 (48%), Gaps = 97/605 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C     + +G  +H   +K G L+  + + N ++ MY +CG   +A + F +   +
Sbjct: 254 ILPVCAGEGEVDIGMGIHGLAVKLG-LSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNK 312

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N  SWN MI  F   G   ++   FN++ +       M I G    ++ A E        
Sbjct: 313 NVVSWNTMISAFSLEGDVNEA---FNLLQE-------MQIQG---EEMKANEV------- 352

Query: 131 ILVNGLD--FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            ++N L    D +   SL  L+G    F    Q + +         +A I  YA CG +N
Sbjct: 353 TILNVLPACLDKLQLRSLKELHGY--SFRHCFQHVELS--------NAFILAYAKCGALN 402

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            A +VF    D +   WN++I G+  N +  +AL L  +M  +G   D  T++S+L AC+
Sbjct: 403 SAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACA 462

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            L  L++GK++HG+  + G+  D  V ++LL                             
Sbjct: 463 HLKSLQYGKEIHGYVLRNGLETDFFVGTSLL----------------------------- 493

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
             + Y  CG+   A+ +F  M +K+L+SWN+MI G SQNG P E+L LF       ++  
Sbjct: 494 --SHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSH 551

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
           + ++ SV  AC+ +S+L LG++    V       D  +  S++D Y K G          
Sbjct: 552 EIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFD 611

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +A+ L+  M+  G  P   T+  IL AC H GLV+E
Sbjct: 612 GLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEE 671

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G K+F  M+    I+P++EHY+C++D+ ARAG L++A+ L+ +MP EAD  +WSS+LR C
Sbjct: 672 GLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSC 731

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
              G   +G KVA++++EL+P+ A  Y+ LS+++A  G+W+    +R +M+E  + K  G
Sbjct: 732 RTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAG 791

Query: 576 CSWAD 580
           CSW +
Sbjct: 792 CSWIE 796



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 133/563 (23%), Positives = 246/563 (43%), Gaps = 119/563 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C     + +G+ +H   +K G++     + N L+ MY +CG   +A+ +FD MP  
Sbjct: 152 VIKACGGILDVRLGEVIHGMVIKMGLVLDVF-VGNALVGMYGKCGAVDEAMKVFDFMPET 210

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI--------SGFAKADLAALE 122
           N  SWN+MI  F + G    S  L   M  +     +++         +G  + D+    
Sbjct: 211 NLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDI---- 266

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G  IH   +  GL  + ++ +++V +Y K                              
Sbjct: 267 -GMGIHGLAVKLGLSEEVMVNNAMVYMYSK------------------------------ 295

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS--TL 240
            CG +N+A+  F +  + + V WN+MIS +    +  EA  L  +M+  G    A+  T+
Sbjct: 296 -CGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTI 354

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            +VL AC     L   K++HG++ +                          C    EL  
Sbjct: 355 LNVLPACLDKLQLRSLKELHGYSFR-------------------------HCFQHVELS- 388

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                 N  I  Y+ CG +  A+ +F  + +K++ SWN++I G +QNG P +AL L   M
Sbjct: 389 ------NAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQM 442

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                + D F+++S++ ACA++ SL+ G+++   V   GL++D  + TSL+  Y  CG  
Sbjct: 443 TYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKA 502

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                          Y++LALF +  + G++   I   ++  AC
Sbjct: 503 SSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGAC 562

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC-MVDLFARAGCLNEAVNLIEQMPFEADVG 506
                ++ G++    +     +  E     C ++D++A++GC+ E+  + + +  + +V 
Sbjct: 563 SQLSALRLGKEAHGYV--LKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLK-DKNVA 619

Query: 507 MWSSILRGCVAHGDKGLGRKVAE 529
            W++I+   VAHG  G G++  E
Sbjct: 620 SWNAII---VAHGIHGHGKEAIE 639



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 158/664 (23%), Positives = 268/664 (40%), Gaps = 174/664 (26%)

Query: 11  LLQSCNTHHSIHVGKQLH------LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           LLQ+C     I  G++LH       H+    +LN+      RL++MY  CG+P D+ L+F
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNT------RLIKMYAMCGSPLDSRLVF 102

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW-NMLISGFAKA--DLAAL 121
           D M  +N   WNA++ G+ + G     +++F  +    DF   N       KA   +  +
Sbjct: 103 DNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDV 162

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             G+ IH  ++  GL  D  +G++LV +YGK                             
Sbjct: 163 RLGEVIHGMVIKMGLVLDVFVGNALVGMYGK----------------------------- 193

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL-LLFHKMRRNGVLEDASTL 240
             CG +++A +VFD   +T+ V WNSMI  +  N    ++  LL   +   G+L D  T+
Sbjct: 194 --CGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTV 251

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            ++L  C+  G ++ G  +HG A K+G+ ++V+V +A++  YSK                
Sbjct: 252 VTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSK---------------- 295

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CG + +A+  F    NK+++SWN+MI   S  G   EA +L   M
Sbjct: 296 ---------------CGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM 340

Query: 361 ---------------NKLDLRMDKFSLASV---------------------ISACANISS 384
                          N L   +DK  L S+                     I A A   +
Sbjct: 341 QIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGA 400

Query: 385 LELGEQVFARVTIIGLDSDQIIST--SLVDFYCKCG--YDALALFNEMRNTGVKPTIITF 440
           L   E+VF  +       D+ +S+  +L+  + + G    AL L  +M  +G +P   T 
Sbjct: 401 LNSAEKVFHGI------GDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTI 454

Query: 441 TAILSACD-----------------------------------HCGLVKEGQKWFDAMKW 465
           +++L AC                                    HCG     +  FD MK 
Sbjct: 455 SSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMK- 513

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS------SILRGCVAHG 519
               D  +  ++ M+  +++ G   E++ L  +   E   G+ S      S+   C    
Sbjct: 514 ----DKNLVSWNAMISGYSQNGLPYESLALFRKSLSE---GIQSHEIAIVSVFGACSQLS 566

Query: 520 DKGLGRKVAERMIE-LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
              LG++    +++ L  E+A     +  ++A SG  ++S  + D +++K+V        
Sbjct: 567 ALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIV 626

Query: 579 ADGI 582
           A GI
Sbjct: 627 AHGI 630



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 158/334 (47%), Gaps = 40/334 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL +C    S+  GK++H + L+ G L +   +   LL  Y+ CG  + A +LFD M
Sbjct: 454 ISSLLLACAHLKSLQYGKEIHGYVLRNG-LETDFFVGTSLLSHYIHCGKASSARVLFDRM 512

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-LISGF-AKADLAALEYGK 125
             +N  SWNAMI G+ + G   +SL LF     +   S  + ++S F A + L+AL  GK
Sbjct: 513 KDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGK 572

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           + H ++L      D+ +G S++++Y K G                  C+           
Sbjct: 573 EAHGYVLKALQTEDAFVGCSIIDMYAKSG------------------CI----------- 603

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
              ++R+VFD   D +   WN++I  +  +    EA+ L+ +M++ G + D  T   +L 
Sbjct: 604 --KESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILM 661

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-LLDTYSKRGMPSDACKLFSEL-KVYDT 303
           AC   G +E G +         +I+  +   A L+D  ++ G   DA +L +E+ +  D 
Sbjct: 662 ACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADN 721

Query: 304 ILLNTMITVYSSCGRIE----DAKHIFRTMPNKS 333
            + ++++    + G +E     AK +    P+K+
Sbjct: 722 RIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKA 755


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 176/676 (26%), Positives = 301/676 (44%), Gaps = 137/676 (20%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L Q C       +GKQ+  H ++ G   +   + N L+++Y  CGN T+A  +FD +  
Sbjct: 62  KLFQRCTELRDAALGKQVRDHIIQGGRQLNIYEL-NTLIKLYSICGNVTEARQIFDSVEN 120

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYGKQI 127
           +   +WNA+I G+ ++GH +++  LF  M  +  + S    +S   A +  A L +GK++
Sbjct: 121 KTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEV 180

Query: 128 HSHILVNGLDFDSVLGSSLVNLY-------------------------------GKCGDF 156
           H+ ++  G   D  +G++LV++Y                                K GD+
Sbjct: 181 HAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDW 240

Query: 157 NSANQVLNMMKE----PDDF------------------------CLSA-----------L 177
             A ++   M++    P+                          C++A           L
Sbjct: 241 EKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSL 300

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I  Y  CG +  ARRVFD       V W  MI GY  N    +A  LF  M+  G+  D 
Sbjct: 301 IRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDR 360

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T   +++AC+    L H +++H      G   D++V++AL+  Y+K             
Sbjct: 361 ITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAK------------- 407

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                             CG I+DA+ +F  MP + ++SW++MI    +NG   EA + F
Sbjct: 408 ------------------CGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETF 449

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M + ++  D  +  ++++AC ++ +L++G +++ +     L S   +  +L+    K 
Sbjct: 450 HLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKH 509

Query: 418 G---------------------------------YDALALFNEMRNTGVKPTIITFTAIL 444
           G                                  +AL LF+ M     +P  +TF  +L
Sbjct: 510 GSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVL 569

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           SAC   G V EG+++F  +     I P ++ Y CMVDL  RAG L+EA  LI+ MP +  
Sbjct: 570 SACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPT 629

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
             +WSS+L  C  HG+  +  + AER + +DP +   Y+QLS ++A +G WE  + +R +
Sbjct: 630 SSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKV 689

Query: 565 MREKHVGKLPGCSWAD 580
           M  + + K  GC+W +
Sbjct: 690 MESRGIRKEQGCTWIE 705



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 176/422 (41%), Gaps = 87/422 (20%)

Query: 145 SLVNLYGKCGDFNSA-------NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
           + V L+ +C +   A       + ++   ++ + + L+ LI  Y+ CG + +AR++FD  
Sbjct: 59  TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSV 118

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
            + + V WN++I+GY       EA  LF +M   G+     T  SVL ACSS   L  GK
Sbjct: 119 ENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGK 178

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           +VH      G + D  + +AL+  Y K G   DA ++F  L + D    N M+  Y+  G
Sbjct: 179 EVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSG 238

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
             E                               +A +LF  M ++ L+ +K S  S++ 
Sbjct: 239 DWE-------------------------------KAFELFYRMQQVGLKPNKISFLSILD 267

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------- 418
            C    +L  G+ V A+    GL  D  ++TSL+  Y  CG                   
Sbjct: 268 GCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVS 327

Query: 419 --------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                          DA  LF  M+  G++P  IT+  I++AC     +   +       
Sbjct: 328 WTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAR------- 380

Query: 465 WQYHIDPEIEHY-------SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
            + H   +I  +       + +V ++A+ G + +A  + + MP   DV  WS+++   V 
Sbjct: 381 -EIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGAYVE 438

Query: 518 HG 519
           +G
Sbjct: 439 NG 440



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 140/305 (45%), Gaps = 40/305 (13%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI Y+  ++ +C    +++  +++H      G   + L ++  L+ MY +CG   DA  +
Sbjct: 360 RITYM-HIMNACAISANLNHAREIHSQVDIAG-FGTDLLVSTALVHMYAKCGAIKDARQV 417

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLA 119
           FD MPRR+  SW+AMI  +++ G+  ++ + F++M + N      ++  L++  A   L 
Sbjct: 418 FDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLN--ACGHLG 475

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL+ G +I++  +   L     LG++L+ +  K G    A  + + M   D    +A+I 
Sbjct: 476 ALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIG 535

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GY+  G   +A  +FDR                          +L  + R N V     T
Sbjct: 536 GYSLHGNAREALYLFDR--------------------------MLKERFRPNSV-----T 564

Query: 240 LASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
              VLSACS  GF++ G++   +  +  G++  V +   ++D   + G   +A  L   +
Sbjct: 565 FVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSM 624

Query: 299 KVYDT 303
            V  T
Sbjct: 625 PVKPT 629


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 179/618 (28%), Positives = 287/618 (46%), Gaps = 118/618 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF-DEMPR 69
            LQSC  H +++ GKQLH   +  G  + + P    L+ MY +CG   +A+L+F D    
Sbjct: 17  FLQSCADHQNLNKGKQLHSLMITYG-FSPSPPSITSLINMYSKCGQMGEAILVFYDPCHE 75

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAALEY 123
           RN F++NA+I GF+  G   K  Q +       VMP K  F          +     +E 
Sbjct: 76  RNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPC------VVRTCCEVMEV 129

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            K+IH  +L  GL+ D  +GS                               AL++ Y  
Sbjct: 130 -KKIHGCLLKMGLELDVFVGS-------------------------------ALVNTYLK 157

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G M DA++VF   +    V+WN+MI+GY       EAL +F +M   GV     T+  +
Sbjct: 158 NGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGI 217

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LS  +S G L++GK VHG   K+G    V V++AL+D Y K                   
Sbjct: 218 LSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGK------------------- 258

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       C  I DA  IF  +  K + SWNS+I    Q G     L LF  M   
Sbjct: 259 ------------CKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGS 306

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ--------IISTSLVDFYC 415
            +  D  ++ +V+ AC+++++L  G ++   + I GL  D         ++S +++D Y 
Sbjct: 307 GILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYA 366

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +AL +F++M     KP  +T   
Sbjct: 367 KCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVG 426

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC+H G V  G+ +   M+  + + P IEHY+C++D+  RAG L +A  ++++MP +
Sbjct: 427 VLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQ 486

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
           A+  +W ++L  C  HG+  L    A ++++L+PE+  +Y+ +S+++   G +E+   +R
Sbjct: 487 ANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVR 546

Query: 563 DIMREKHVGKLPGCSWAD 580
             M+E++V K PGCSW +
Sbjct: 547 KTMKEQNVKKTPGCSWIE 564



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 128/285 (44%), Gaps = 12/285 (4%)

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +L + +   + L +C+    L  GKQ+H      G        ++L++ YSK G   +A 
Sbjct: 7   MLNNVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAI 66

Query: 293 KLFSE-LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
            +F +     +    N +I+ + S G        ++ M  + ++        + +    +
Sbjct: 67  LVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEV 126

Query: 352 -EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
            E   +   + K+ L +D F  +++++      S+E  ++VF  ++I     D ++  ++
Sbjct: 127 MEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSI----RDVVLWNAM 182

Query: 411 VDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQY 467
           ++ Y K G   +AL +F  M   GV P+  T T ILS     G +  G+      MK  Y
Sbjct: 183 INGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGY 242

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
             D  +   + ++D++ +   + +A+ +I +M  E D+  W+SI+
Sbjct: 243 --DSGVSVSNALIDMYGKCKHIGDAL-IIFEMINEKDIFSWNSII 284



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-------TLPIANRLLQMYMRCGNPTDA 60
           +  +L +C+   ++  G+++H + +  G+           L ++N ++ MY +CG+  +A
Sbjct: 315 ITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNA 374

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           L +FD M +++  SWN MI G+   G+  ++L +F+ M
Sbjct: 375 LKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQM 412


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 177/552 (32%), Positives = 260/552 (47%), Gaps = 102/552 (18%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALE 122
           MP+RN  SW AMI G  +     ++++ F  M         F+++  I   A A L ++E
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIR--ACASLGSIE 58

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            GKQ+H   L  G+  +  +GS+L ++Y KC                             
Sbjct: 59  MGKQMHCLALKFGIGSELFVGSNLEDMYSKC----------------------------- 89

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             G M DA +VF+       V W +MI GY    E  EALL F KM    V  D   L S
Sbjct: 90  --GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCS 147

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
            L AC +L   + G+ VH    K+G   D+ V +AL D YSK                  
Sbjct: 148 TLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSK------------------ 189

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                         G +E A ++F      ++++S+  +I G  +     + L +F  + 
Sbjct: 190 -------------AGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 236

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
           +  +  ++F+ +S+I ACAN ++LE G Q+ A+V  I  D D  +S+ LVD Y KCG   
Sbjct: 237 RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLE 296

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                          DA+ +F  M + GVKP  ITF ++L+ C 
Sbjct: 297 QAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS 356

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV+EG  +F +M   Y + P  EHYSC++DL  RAG L EA   I +MPFE +   W
Sbjct: 357 HAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGW 416

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            S L  C  HGDK +G+  AE++++L+P+N+ A + LS+I+A   +WE    +R  MR+ 
Sbjct: 417 CSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDG 476

Query: 569 HVGKLPGCSWAD 580
           +V KLPG SW D
Sbjct: 477 NVKKLPGYSWVD 488



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 182/357 (50%), Gaps = 37/357 (10%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +++C +  SI +GKQ+H   LK GI  S L + + L  MY +CG   DA  +F+EMP ++
Sbjct: 48  IRACASLGSIEMGKQMHCLALKFGI-GSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKD 106

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDFSWNMLISGF-AKADLAALEYGKQIHS 129
             SW AMI+G+ K+G  E++L  F  M  ++     ++L S   A   L A ++G+ +HS
Sbjct: 107 EVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHS 166

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            ++  G + D  +G++L ++Y K GD  SA+ V  +  E                     
Sbjct: 167 SVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSE--------------------- 205

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
            R V         V +  +I GY+   +  + L +F ++RR G+  +  T +S++ AC++
Sbjct: 206 CRNV---------VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACAN 256

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
              LE G Q+H    K+   +D  V+S L+D Y K G+   A + F E+     I  N++
Sbjct: 257 QAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSL 316

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNK 362
           ++V+   G  +DA  IF  M ++ +    I++ S++ G S  G   E LD F +M+K
Sbjct: 317 VSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDK 373



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 82/182 (45%), Gaps = 31/182 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L+++C    ++  G QLH   +K         +++ L+ MY +CG    A+  FDE+
Sbjct: 247 FSSLIKACANQAALEQGTQLHAQVMKINFDEDPF-VSSILVDMYGKCGLLEQAIQAFDEI 305

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
                 +WN+++  F + G  + ++++F  M  +    N  ++  L++G +         
Sbjct: 306 GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS--------- 356

Query: 124 GKQIHSHILVNGLDF----DSVLG--------SSLVNLYGKCGDFNSANQVLNMMK-EPD 170
               H+ ++  GLD+    D   G        S +++L G+ G    A + +N M  EP+
Sbjct: 357 ----HAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPN 412

Query: 171 DF 172
            F
Sbjct: 413 AF 414


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 191/615 (31%), Positives = 282/615 (45%), Gaps = 112/615 (18%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D    LLQ C    SI   KQ+H       +L +++   N  L       +   A + F 
Sbjct: 33  DKFNSLLQQC---LSIKQLKQIHAQ-----LLTNSIHKPNSFLYKIADLKDFAYASVFFS 84

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEK-SLQLFNVMP----QKNDFSWNMLISGFAKADLAA 120
            +     +S+N MI G     +K   +L+ ++ M     + N+ ++  L    A ++L A
Sbjct: 85  NILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLF--IACSNLLA 142

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           +E G+  H  ++  GLD D  +  SL+ +Y                              
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHVSHSLITMY------------------------------ 172

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
            A CGKM DAR+VFD  +    V WNSMISGY       EA+ LF +M   G   +  +L
Sbjct: 173 -ARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSL 231

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SVL AC  LG L+ G  V     +  +  +  + SAL+  Y K                
Sbjct: 232 VSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGK---------------- 275

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CG +  A+ IF +M  K  ++WN+MI G +QNG   EA+ LF +M
Sbjct: 276 ---------------CGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDM 320

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                  D+ +L  ++SACA+I +L+LG+QV    +  G   D  + T+LVD Y KCG  
Sbjct: 321 RMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSL 380

Query: 419 -------------------------------YDALALFNEMRNTG--VKPTIITFTAILS 445
                                           +ALALF  M N G  V P  ITF  +LS
Sbjct: 381 DNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLS 440

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV EG++ F  M   + + P+IEHYSCMVDLF+RAG L EA + +  MP + D 
Sbjct: 441 ACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDE 500

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +  ++L  C    +  +  +V + ++EL+P N+  Y+  S ++A    W+ S+ +R +M
Sbjct: 501 VILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLM 560

Query: 566 REKHVGKLPGCSWAD 580
           ++K V K PGCSW D
Sbjct: 561 KQKGVSKTPGCSWID 575


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 191/615 (31%), Positives = 282/615 (45%), Gaps = 112/615 (18%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D    LLQ C    SI   KQ+H       +L +++   N  L       +   A + F 
Sbjct: 33  DKFNSLLQQC---LSIKQLKQIHAQ-----LLTNSIHKPNSFLYKIADLKDFAYASVFFS 84

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEK-SLQLFNVMP----QKNDFSWNMLISGFAKADLAA 120
            +     +S+N MI G     +K   +L+ ++ M     + N+ ++  L    A ++L A
Sbjct: 85  NILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLF--IACSNLLA 142

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           +E G+  H  ++  GLD D  +  SL+ +Y                              
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHVSHSLITMY------------------------------ 172

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
            A CGKM DAR+VFD  +    V WNSMISGY       EA+ LF +M   G   +  +L
Sbjct: 173 -ARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSL 231

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SVL AC  LG L+ G  V     +  +  +  + SAL+  Y K                
Sbjct: 232 VSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGK---------------- 275

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CG +  A+ IF +M  K  ++WN+MI G +QNG   EA+ LF +M
Sbjct: 276 ---------------CGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDM 320

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                  D+ +L  ++SACA+I +L+LG+QV    +  G   D  + T+LVD Y KCG  
Sbjct: 321 RMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSL 380

Query: 419 -------------------------------YDALALFNEMRNTG--VKPTIITFTAILS 445
                                           +ALALF  M N G  V P  ITF  +LS
Sbjct: 381 DNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLS 440

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV EG++ F  M   + + P+IEHYSCMVDLF+RAG L EA + +  MP + D 
Sbjct: 441 ACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDE 500

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +  ++L  C    +  +  +V + ++EL+P N+  Y+  S ++A    W+ S+ +R +M
Sbjct: 501 VILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLM 560

Query: 566 REKHVGKLPGCSWAD 580
           ++K V K PGCSW D
Sbjct: 561 KQKGVSKTPGCSWID 575


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 180/611 (29%), Positives = 285/611 (46%), Gaps = 115/611 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C     +  G+ +H     +GI +  L  A  L  MY +C  P DA  +FD M   
Sbjct: 65  LLKLCAARGDLATGRAVHAQLAARGIDSEALA-ATALANMYAKCRRPADARRVFDRM--- 120

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL--------- 121
                                       P ++  +WN L++G+A+  LA +         
Sbjct: 121 ----------------------------PVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152

Query: 122 -EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
            E G++  S  LV      SVL +              A  + + ++E  +   +A++  
Sbjct: 153 EEEGERPDSITLV------SVLPACANARALAACREAHAFAIRSGLEELVNVA-TAILDA 205

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDAST 239
           Y  CG +  AR VFD     +SV WN+MI GY  N +  EAL LF++M   GV + D S 
Sbjct: 206 YCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSV 265

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           LA+ L AC  LG L+ G +VH    ++G+  +V V                         
Sbjct: 266 LAA-LQACGELGCLDEGMRVHELLVRIGLDSNVSV------------------------- 299

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                 +N +IT+YS C R++ A H+F  +  ++ +SWN+MI+G +QNG   +A+ LF  
Sbjct: 300 ------MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTR 353

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M   +++ D F+L SVI A A+IS       +      + LD D  + T+L+D Y KCG 
Sbjct: 354 MQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGR 413

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF EM++ G+ P   TF ++LSA
Sbjct: 414 VNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSA 473

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GLV EG+++F +MK  Y ++P +EHY  MVDL  RAG L+EA   I++MP +  + 
Sbjct: 474 CSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLS 533

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           ++ ++L  C  H +  L  + A+++ EL P+    ++ L++I+A +  W+  + +R  M 
Sbjct: 534 VYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAME 593

Query: 567 EKHVGKLPGCS 577
           +  + K PG S
Sbjct: 594 KNGLQKTPGWS 604



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 142/333 (42%), Gaps = 67/333 (20%)

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL  F  M   G      T  S+L  C++ G L  G+ VH      G+  + + A+AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K   P+DA ++F  + V D                                ++WN++
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDR-------------------------------VAWNAL 131

Query: 341 IVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           + G ++NG    A+++   M + +  R D  +L SV+ ACAN  +L    +  A     G
Sbjct: 132 VAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSG 191

Query: 400 LDSDQIISTSLVDFYCKCG---------------------------------YDALALFN 426
           L+    ++T+++D YCKCG                                  +ALALFN
Sbjct: 192 LEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFN 251

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
            M   GV  T ++  A L AC   G + EG +  + +  +  +D  +   + ++ ++++ 
Sbjct: 252 RMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLV-RIGLDSNVSVMNALITMYSKC 310

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             ++ A ++ +++     V  W++++ GC  +G
Sbjct: 311 KRVDLASHVFDELDRRTQVS-WNAMILGCAQNG 342


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 171/610 (28%), Positives = 291/610 (47%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +   ++ GKQLH + LK G ++    I   LL +Y++CG   +AL +F   
Sbjct: 247 IASLLAACASIGDLNKGKQLHSYLLKAG-MSPDYIIEGSLLDLYVKCGVIVEALEIFKSG 305

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
            R N   WN M+  + ++    KS  LF  M     + N+F++  L+     A    +  
Sbjct: 306 DRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYA--GEINL 363

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH   +  G + D  +   L+++Y K                               
Sbjct: 364 GEQIHLLSIKTGFESDMYVSGVLIDMYSKY------------------------------ 393

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G ++ ARR+ +       V W SMI+GY+ +    EAL  F  M+  G+  D   LAS 
Sbjct: 394 -GWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASA 452

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +SAC+ +  +  G+Q+H      G   DV + +AL++ Y++ G   +A  LF  ++  D 
Sbjct: 453 ISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDK 512

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           I  N M++                               G +Q+G   EAL++F  M + 
Sbjct: 513 ITWNGMVS-------------------------------GFAQSGLYEEALEVFIKMYQA 541

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
            ++ + F+  S ISA AN++ ++ G+Q+ A V   G  S+  ++ +L+  Y KC      
Sbjct: 542 GVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDA 601

Query: 418 ---------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      G +AL LF++M+  G+KP  +TF  +L+AC H 
Sbjct: 602 KMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHV 661

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG  +F +M  ++ I P  +HY+C+VD+  RAG L+ A   +E+MP  A+  +W +
Sbjct: 662 GLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRT 721

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +G   A+ ++EL+P ++ +Y+ LS+ +A +G+W     +R +M+++ V
Sbjct: 722 LLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGV 781

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 782 RKEPGRSWIE 791



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 121/515 (23%), Positives = 222/515 (43%), Gaps = 107/515 (20%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------V 97
            N L+ +Y + G    A  +F+++  R+  SW AM+ G+ + G  E+++ L++      V
Sbjct: 80  GNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGV 139

Query: 98  MPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
           +P    +  + ++S   KA L   E G+ +H+ +   G   ++V+G++L+ LY + G   
Sbjct: 140 VP--TPYVLSSVLSACTKAAL--FEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGS-- 193

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
                                        ++ A RVF        V +N++IS +     
Sbjct: 194 -----------------------------LSLAERVFSEMPYCDRVTFNTLISRHAQCGN 224

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
              AL +F +MR +G   D  T+AS+L+AC+S+G L  GKQ+H +  K G+  D I+  +
Sbjct: 225 GESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGS 284

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           LLD Y K G+  +A ++F                               ++    +++ W
Sbjct: 285 LLDLYVKCGVIVEALEIF-------------------------------KSGDRTNVVLW 313

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N M+V   Q     ++ DLFC M    +R ++F+   ++  C     + LGEQ+      
Sbjct: 314 NLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIK 373

Query: 398 IGLDSDQIISTSLVDFYCKCGY---------------------------------DALAL 424
            G +SD  +S  L+D Y K G+                                 +AL  
Sbjct: 374 TGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALET 433

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F +M+  G+ P  I   + +SAC     +++GQ+   +  +      ++  ++ +V+L+A
Sbjct: 434 FKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQ-IHSRVYVSGYSADVSIWNALVNLYA 492

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           R G   EA +L E +  +  +  W+ ++ G    G
Sbjct: 493 RCGRSKEAFSLFEAIEHKDKI-TWNGMVSGFAQSG 526



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 149/359 (41%), Gaps = 74/359 (20%)

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
           T  ++   N  ++G++++ +  + L LF    R      +   A  L  C   G ++H  
Sbjct: 2   TRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECR--GSVKHWP 59

Query: 258 QV---HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            V   H  A   G+ +D I  + L+D Y+K+G+   A ++F +L   D            
Sbjct: 60  LVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDN----------- 108

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
                               +SW +M+ G ++NG   EA+ L+  M+   +    + L+S
Sbjct: 109 --------------------VSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSS 148

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY-------------------- 414
           V+SAC   +  E G  V A+V   G  S+ ++  +L+  Y                    
Sbjct: 149 VLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCD 208

Query: 415 -------------CKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                        C  G  AL +F EMR +G  P  +T  ++L+AC   G + +G++   
Sbjct: 209 RVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQ-LH 267

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
           +   +  + P+      ++DL+ + G + EA+ + +      +V +W+ +L   VA+G 
Sbjct: 268 SYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGD-RTNVVLWNLML---VAYGQ 322


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 188/677 (27%), Positives = 298/677 (44%), Gaps = 143/677 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L RLL +C T  S+   + LH   L  G+L + L    +LL  Y   G+   A  + DE 
Sbjct: 26  LHRLLPACATLPSL---RALHARLLAHGLLRA-LRARTKLLSCYAALGDLASARRVLDET 81

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
           PR + +++   +      G    +L L   M    P+ +D    + ++  A    A   Y
Sbjct: 82  PRPDPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRY 141

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+++H + +  G                                  D F ++ L+  YA 
Sbjct: 142 GRRLHCNAVKAG--------------------------------GADGFVMNCLVDMYAK 169

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G + +AR+VFDR    + V W SM+SG + N    E L LF++MR   VL    T+ASV
Sbjct: 170 AGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASV 229

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK------------------- 284
           L AC+ LG L  G+ VHG   K G++ +  + +A+LD Y K                   
Sbjct: 230 LMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDL 289

Query: 285 ------------RGMPSDACKLFSELK--------------------------------- 299
                        G P DA  LFS+ K                                 
Sbjct: 290 VLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAM 349

Query: 300 ------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                 + + +++N ++ +Y+ C  + +A  IF  + NK +++WNS+I G  +N    EA
Sbjct: 350 SVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEA 409

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L LF  M       D  S+ + +SAC  +  L +G+            S+  ++T+L++ 
Sbjct: 410 LMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNL 469

Query: 414 YCKC--------------------------GYD-------ALALFNEMRNTGVKPTIITF 440
           Y KC                          GY        ++ L N+M    ++P  + F
Sbjct: 470 YNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVF 529

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           T+ILS C H G+V  G+  FD+M   ++I P ++HY+CMVD+ ARAG L EA+  I++MP
Sbjct: 530 TSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMP 589

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
             AD+ +W + L GC  H     G +   RM+ L P+    Y+ +S+++ + G W+KS  
Sbjct: 590 MPADISIWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYTSYGRWDKSLA 649

Query: 561 IRDIMREKHVGKLPGCS 577
           IR +M+E+ + KLPGCS
Sbjct: 650 IRRLMQERGLVKLPGCS 666


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 175/583 (30%), Positives = 278/583 (47%), Gaps = 112/583 (19%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGFMKLGHKEKSLQL 94
           IL ST+  +N          N    +L+F + P   N F +N MI G +       ++ L
Sbjct: 42  ILRSTINFSN----------NAQYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHL 91

Query: 95  FNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
           +  M +     + F+++ ++   A+ +L  L  G  IHS +   G D D  + +++V  Y
Sbjct: 92  YASMHKAAIVPDSFTFSFVLKACARLNLFHL--GVMIHSLVFKTGFDCDVFVKTNVVCFY 149

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
            KC                               G + DA +VFD     + V W  MI 
Sbjct: 150 SKC-------------------------------GFLRDAWKVFDDMVVKNVVSWTGMIC 178

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
           G I   +  EA+ LF  +  +G+  D   +  VL AC+ LG LE G+ +     + G+  
Sbjct: 179 GCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSR 238

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
           +V VA++L+D Y+K                               CG +E+A+ +F  M 
Sbjct: 239 NVFVATSLVDMYTK-------------------------------CGSMEEARFVFDGMV 267

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
            K ++ W++MI G + NG P EA++LF  M K+++R D +++   +S+CA++ +LELG  
Sbjct: 268 EKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNW 327

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------------- 419
               +      S+ ++ TSL+DFY KCG                                
Sbjct: 328 AKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQ 387

Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
              A  +F +M   G+ P   TF  +L  C H GLV +G+ +F++M   + + P IEHY 
Sbjct: 388 VGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYG 447

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
           CMVDL ARAG L+EA NLI+ MP +A+V +W S+L GC  H +  L   V +++IEL+P 
Sbjct: 448 CMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPW 507

Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           N+  Y+ LS+I++ S  W+++  IR  + EK + KLPG SW +
Sbjct: 508 NSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVE 550



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/490 (22%), Positives = 201/490 (41%), Gaps = 79/490 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C   +  H+G  +H    K G  +  + +   ++  Y +CG   DA  +FD+M  +
Sbjct: 110 VLKACARLNLFHLGVMIHSLVFKTG-FDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVK 168

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIH 128
           N  SW  MI G ++ G   +++ LF  + +        +I     A A L  LE G+ I 
Sbjct: 169 NVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWID 228

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
             +   GL  +  + +SLV++Y KCG    A  V + M E D  C SA+I GYA      
Sbjct: 229 RCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYA------ 282

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                                    SN    EA+ LF +MR+  V  D   +   LS+C+
Sbjct: 283 -------------------------SNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCA 317

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           SLG LE G    G       + + ++ ++L+D Y+K G   +A  ++  +K  D ++ N 
Sbjct: 318 SLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNA 377

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +I+                               GL+  G    A  +F  M K  +  +
Sbjct: 378 VIS-------------------------------GLAMYGQVGAAFGVFGQMGKFGIPPN 406

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALF--- 425
           + +   ++  C +   ++ G   F       +  D  ++ ++  + C     A A F   
Sbjct: 407 EHTFVGLLCGCTHAGLVDDGRHYFN-----SMSHDFSVTPTIEHYGCMVDLLARAGFLDE 461

Query: 426 --NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDL 482
             N ++   +K  +I + ++L  C    L +E Q     +K    ++P    HY  + ++
Sbjct: 462 AHNLIKGMPMKANVIVWGSLLGGCR---LHRETQLAEHVLKQLIELEPWNSGHYVLLSNI 518

Query: 483 FARAGCLNEA 492
           ++ +   +EA
Sbjct: 519 YSASRRWDEA 528



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 157/367 (42%), Gaps = 74/367 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           + R+L++C     +  G+ +    +++  L+  + +A  L+ MY +CG+  +A  +FD M
Sbjct: 208 IVRVLRACARLGDLESGRWID-RCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGM 266

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGK 125
             ++   W+AMI+G+   G   ++++LF  M + N     + M+ +  + A L ALE G 
Sbjct: 267 VEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGN 326

Query: 126 QIHSHILVNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
                 L+N  +F  + VLG+SL++ Y KCG    A  V  MMKE D    +A+ISG A 
Sbjct: 327 WAKG--LMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAM 384

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G++  A  VF                                +M + G+  +  T   +
Sbjct: 385 YGQVGAAFGVFG-------------------------------QMGKFGIPPNEHTFVGL 413

Query: 244 LSACSSLGFLEHGKQVH---GHACKV-------GVIDDVIVASALLDTYSK--RGMPSDA 291
           L  C+  G ++ G+       H   V       G + D++  +  LD      +GMP  A
Sbjct: 414 LCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKA 473

Query: 292 -----------CKLFSELKVYDTILLN-------------TMITVYSSCGRIEDAKHIFR 327
                      C+L  E ++ + +L                +  +YS+  R ++A+ I  
Sbjct: 474 NVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRS 533

Query: 328 TMPNKSL 334
           T+  K +
Sbjct: 534 TVNEKGM 540


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 176/615 (28%), Positives = 284/615 (46%), Gaps = 105/615 (17%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           +  +  ++ +C     + +G  +H    K GI    + + N L+ MY +CG   +A  LF
Sbjct: 299 VATMVTVIPACAAVGEVRMGMVVHGLAFKLGI-TEEVTVNNSLVDMYSKCGYLGEARALF 357

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS------WNMLISGFAKADL 118
           D    +N  SWN +I G+ K G      +L   M ++           N+L +   +  L
Sbjct: 358 DMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQL 417

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            +L   K+IH +   +G                                  D+   +A +
Sbjct: 418 LSL---KEIHGYAFRHGF-------------------------------LKDELVANAFV 443

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           + YA C  ++ A RVF      +   WN++I  +  N    ++L LF  M  +G+  D  
Sbjct: 444 AAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRF 503

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T+ S+L AC+ L FL  GK++HG   + G+  D  +  +L+                   
Sbjct: 504 TIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLM------------------- 544

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                       ++Y  C  +   K IF  M NKSL+ WN MI G SQN  P EALD F 
Sbjct: 545 ------------SLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFR 592

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M    ++  + ++  V+ AC+ +S+L LG++V +      L  D  ++ +L+D Y KCG
Sbjct: 593 QMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCG 652

Query: 419 ---------------------------------YDALALFNEMRNTGVKPTIITFTAILS 445
                                              A+ LF  M+N G +P   TF  +L 
Sbjct: 653 CMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLI 712

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC+H GLV EG K+   M+  Y + P++EHY+C+VD+  RAG L EA+ L+ +MP E D 
Sbjct: 713 ACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDS 772

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
           G+WSS+L  C  +GD  +G +V+++++EL+P  A  Y+ LS+++A  G+W++   +R  M
Sbjct: 773 GIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRM 832

Query: 566 REKHVGKLPGCSWAD 580
           +E  + K  GCSW +
Sbjct: 833 KENGLHKDAGCSWIE 847



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 198/423 (46%), Gaps = 69/423 (16%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D   + +  LL++C  H +IHVG+++H        L + + ++ R++ MY  CG+P+D+ 
Sbjct: 89  DISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSR 148

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW-NMLISGFAKA--DL 118
            +FD    ++ F +NA++ G+ +      ++ LF  +    D +  N  +   AKA   +
Sbjct: 149 GVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGV 208

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           A +E G+ +H+  L                   K G F+            D F  +ALI
Sbjct: 209 ADVELGEAVHALAL-------------------KAGGFS------------DAFVGNALI 237

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM---RRNGVLE 235
           + Y  CG +  A +VF+   + + V WNS++     N    E   +F ++      G++ 
Sbjct: 238 AMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVP 297

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D +T+ +V+ AC+++G +  G  VHG A K+G+ ++V V ++L+D YSK           
Sbjct: 298 DVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSK----------- 346

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                               CG + +A+ +F     K+++SWN++I G S+ G      +
Sbjct: 347 --------------------CGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFE 386

Query: 356 LFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           L   M + + +R+++ ++ +V+ AC+    L   +++       G   D++++ + V  Y
Sbjct: 387 LLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAY 446

Query: 415 CKC 417
            KC
Sbjct: 447 AKC 449


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 180/609 (29%), Positives = 292/609 (47%), Gaps = 100/609 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            A +L  C +   + +G QLH   +  G+ L+S  P+AN LL MY +C     A  LFD 
Sbjct: 162 FACVLSVCASEAMLDLGTQLHGIAVGCGLELDS--PVANTLLAMYSKCQCLQAARKLFDT 219

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYG 124
           +P+ +  SWN +I G+++ G   ++  LF  M        ++  + F     +L +L++ 
Sbjct: 220 LPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHC 279

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K+IH +I+ + +  D  L S+L+++Y K                               C
Sbjct: 280 KEIHGYIIRHAVVLDVFLKSALIDIYFK-------------------------------C 308

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             +  A++   +++   +V+  +MISGY+ N ++ EAL  F  + +  +   + T +S+ 
Sbjct: 309 RDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIF 368

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            A + L  L  GK++HG   K  + +   V SA+LD Y+K G    AC++F+ +   D I
Sbjct: 369 PAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAI 428

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N+MIT  S  GR                               P EA++LF  M    
Sbjct: 429 CWNSMITSCSQNGR-------------------------------PGEAINLFRQMGMEG 457

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
            R D  S++  +SACAN+ +L  G+++   +    L SD    +SL+D Y KCG      
Sbjct: 458 TRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSR 517

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       + LALF+EM   G++P  +TF  I+SAC H G
Sbjct: 518 RVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAG 577

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V EG +++  M  +Y I   +EHY+C+ D+F RAG L+EA   I  MPF  D G+W ++
Sbjct: 578 QVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTL 637

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  HG+  L    ++ + +LDP N+  Y+ L+++ A +G+W K   +R IM+E+ V 
Sbjct: 638 LGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVR 697

Query: 572 KLPGCSWAD 580
           K+PG SW +
Sbjct: 698 KVPGYSWIE 706



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 225/485 (46%), Gaps = 53/485 (10%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKND 103
           MY+R G+  DA  LF  +      +WN MI GF  +G    +L  +       V P K  
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
           F + +     A   L +++ GK +H  + + GL  D  +GSSL+ L              
Sbjct: 61  FPYVVK----ACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKL-------------- 102

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
                            YA  G ++DA+ +FD      SV+WN M++GY+ N +   A+ 
Sbjct: 103 -----------------YAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIK 145

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           +F +MR + +  ++ T A VLS C+S   L+ G Q+HG A   G+  D  VA+ LL  YS
Sbjct: 146 IFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYS 205

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNS 339
           K      A KLF  L   D +  N +I+ Y   G + +A+H+FR M +  +    I++ S
Sbjct: 206 KCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFAS 265

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
            +  +++  S     ++   + +  + +D F  +++I        +E+ ++   + +   
Sbjct: 266 FLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSF- 324

Query: 400 LDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
              D ++ T+++  Y   G   +AL  F  +    +KPT +TF++I  A      +  G+
Sbjct: 325 ---DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGK 381

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           +   ++  +  +D +    S ++D++A+ G L+ A  +  ++  E D   W+S++  C  
Sbjct: 382 ELHGSI-IKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRIT-EKDAICWNSMITSCSQ 439

Query: 518 HGDKG 522
           +G  G
Sbjct: 440 NGRPG 444



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 37/255 (14%)

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
           +Y   G ++DAK++F T+      +WN MI G +  G    AL  +  M    +  DK++
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------ 419
              V+ AC  + S+++G+ V   V ++GL  D  + +SL+  Y + G+            
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 420 ---------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                +A+ +F EMR++ +KP  +TF  +LS C    ++  G +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 459 WFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
               A+     +D  +   + ++ ++++  CL  A  L + +P ++D+  W+ I+ G V 
Sbjct: 181 LHGIAVGCGLELDSPVA--NTLLAMYSKCQCLQAARKLFDTLP-QSDLVSWNGIISGYVQ 237

Query: 518 HGDKGLGRKVAERMI 532
           +G  G    +   MI
Sbjct: 238 NGLMGEAEHLFRGMI 252


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 158/496 (31%), Positives = 250/496 (50%), Gaps = 64/496 (12%)

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L +L  GKQ+HS I+ +G   D  + + L+N Y K G F S+  + + M   +    + L
Sbjct: 75  LGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNIL 134

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I+GY   G +  A+++FD  ++ +   WN+MI+G      + +AL LF +M   G L D 
Sbjct: 135 INGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDE 194

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            TL SVL  C+ L  L  G++VH    K G     +V S+L   Y K G  SD  KL   
Sbjct: 195 FTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLI-- 252

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                                        ++MP +++++WN++I G +QNG P E L+ +
Sbjct: 253 -----------------------------KSMPIRTVVAWNTLIAGKAQNGCPEEVLNQY 283

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M     R DK +  SV+SAC+ +++L  G+Q+ A V   G  S   + +SL+  Y + 
Sbjct: 284 NMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRS 343

Query: 418 G---------------------------------YDALALFNEMRNTGVKPTIITFTAIL 444
           G                                  +AL LF++M +  ++   +TF ++L
Sbjct: 344 GCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLL 403

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
            AC H GL ++G ++FD M  +Y + P IEHY+C+VDL  RAG L EA  +I  MP + D
Sbjct: 404 YACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPD 463

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
             +W ++L  C  H +  +  +++E +I+LDP +A +Y+ LS+I A++  W   S IR  
Sbjct: 464 GIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKA 523

Query: 565 MREKHVGKLPGCSWAD 580
           MR++ V K PG SW +
Sbjct: 524 MRDRSVRKEPGISWLE 539



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 182/404 (45%), Gaps = 72/404 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LLQSC    S+  GKQ+H   +  G       I+N LL  Y + G    +L+LF  M
Sbjct: 65  FSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKF-ISNHLLNFYSKLGQFKSSLVLFSNM 123

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
           PRRN  S+N +I G+++LG  E + +LF+ M ++N  +WN +I+G  +            
Sbjct: 124 PRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFK 183

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                A L +L  G+++H+ +L  G +  SV+GSSL ++Y K G
Sbjct: 184 EMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSG 243

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
                                           ++D  ++       + V WN++I+G   
Sbjct: 244 S-------------------------------LSDGEKLIKSMPIRTVVAWNTLIAGKAQ 272

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N    E L  ++ M+  G   D  T  SVLSACS L  L  G+Q+H    K G    + V
Sbjct: 273 NGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAV 332

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            S+L+  YS+ G   D+ K F + + +D +L ++MI  Y   GR E+A  +F  M +  +
Sbjct: 333 VSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKM 392

Query: 335 ----ISWNSMIVGLSQNG---SPIEALDLFCNMNKLDLRMDKFS 371
               +++ S++   S +G      E  DL     KL  R++ ++
Sbjct: 393 EANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYT 436



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 176/375 (46%), Gaps = 44/375 (11%)

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +  D S  + +L +C  LG L  GKQVH      G   D  +++ LL+ YSK G    + 
Sbjct: 58  IWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSL 117

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
            LFS +   + +  N +I  Y   G +E A+ +F  M  +++ +WN+MI GL+Q     +
Sbjct: 118 VLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQ 177

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL LF  M  L    D+F+L SV+  CA + SL  G++V A +   G +   ++ +SL  
Sbjct: 178 ALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAH 237

Query: 413 FYCK---------------------------------CGYDALALFNEMRNTGVKPTIIT 439
            Y K                                 C  + L  +N M+  G +P  IT
Sbjct: 238 MYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKIT 297

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN-LIEQ 498
           F ++LSAC     + +GQ+   A   +      +   S ++ +++R+GCL +++   +++
Sbjct: 298 FVSVLSACSELATLGQGQQ-IHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDR 356

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAE---RMIELDPE-NACAYIQLSSIFATSGE 554
             F  DV +WSS++    A+G  G G +  E   +M +L  E N   ++ L    + SG 
Sbjct: 357 ENF--DVVLWSSMI---AAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGL 411

Query: 555 WEKSSLIRDIMREKH 569
            EK +   D+M +K+
Sbjct: 412 KEKGTEYFDLMVKKY 426


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 179/571 (31%), Positives = 264/571 (46%), Gaps = 101/571 (17%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           MY++CG    A  +F  M  RN  SW A++ GF++ G     L+L   M   ++ + N  
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPN-- 58

Query: 110 ISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSL--VNLYGKCGDFNSANQVLNMMK 167
                       EY        L   L    V+G +   V ++G C         +    
Sbjct: 59  ------------EY-------TLSASLKACCVVGDTAAGVGIHGLC---------VRAGY 90

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFH 226
           +  D   S+L+  Y+  G++ DARRVFD     S +  WN+M+SGY       +ALL+F 
Sbjct: 91  QEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFR 150

Query: 227 KMRRNGVLE--DASTLASVLSACSSLGFLEHGKQVHGHACKVG--VIDDVIVASALLDTY 282
           +MRR+      D  T AS+L ACS LG    G QVH      G     + I+A AL+D Y
Sbjct: 151 EMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMY 210

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
            K                               C R+  A  +F  +  K++I W +++V
Sbjct: 211 VK-------------------------------CRRLPVAMQVFERLERKNVIQWTAVVV 239

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G +Q G   EAL+LF    +   R D   L+SV+   A+ + +E G QV          +
Sbjct: 240 GHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGT 299

Query: 403 DQIISTSLVDFYCKCG---------------------------------YDALALFNEMR 429
           D     S+VD Y KCG                                  +A+ALF EMR
Sbjct: 300 DVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMR 359

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
             GV+P  +T+ A+LSAC H GLV E +++F  ++    + P+ EHY+CMVDL  RAG L
Sbjct: 360 AGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGEL 419

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549
            EA +LI  MP E  VG+W ++L  C  H D  +GR+  + ++ +D +N   Y+ LS++ 
Sbjct: 420 REARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVL 479

Query: 550 ATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           A +GEW +   +RD MR + + K  GCSW +
Sbjct: 480 AEAGEWRECHKVRDAMRRRGLKKQGGCSWVE 510



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/456 (23%), Positives = 196/456 (42%), Gaps = 88/456 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L++C        G  +H   ++ G     + +A+ L+ +Y + G   DA  +FD  
Sbjct: 62  LSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDV-VASSLVLVYSKGGRIGDARRVFDGA 120

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP------QKNDFSWNMLISGFAKADLAA 120
                  +WNAM+ G+   GH   +L +F  M       Q ++F++  L+   A + L A
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLK--ACSGLGA 178

Query: 121 LEYGKQIHSHILVNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
              G Q+H+ +  +G     +++L  +LV++Y KC     A QV   ++  +    +A++
Sbjct: 179 TREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVV 238

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
            G+A  G++                               TEAL LF +  R+G   D+ 
Sbjct: 239 VGHAQEGQV-------------------------------TEALELFRRFWRSGARPDSH 267

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
            L+SV+   +    +E G+QVH +  K     DV   ++++D Y K G+P +A ++F E+
Sbjct: 268 VLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREM 327

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
           +                              PN  ++SW +M+ GL ++G   EA+ LF 
Sbjct: 328 RA-----------------------------PN--VVSWTTMVNGLGKHGLGREAVALFE 356

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M    +  D+ +  +++SAC++   ++   + F+ +       D+ +      + C   
Sbjct: 357 EMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIR-----RDRTVRPKAEHYACM-- 409

Query: 419 YDALALFNEMRNT-------GVKPTIITFTAILSAC 447
            D L    E+R          ++PT+  +  +LSAC
Sbjct: 410 VDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSAC 445


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 177/589 (30%), Positives = 280/589 (47%), Gaps = 80/589 (13%)

Query: 38  NSTLPIANR-----------LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           N TLP   R           L+ MY++C    DA  LFD+M  R+  +W  MI G+ + G
Sbjct: 179 NYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECG 238

Query: 87  HKEKSLQLFNVMPQKNDF--SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGS 144
              +SL LF  M ++        M+   FA A L A+   + I  +I       D +LG+
Sbjct: 239 KANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGT 298

Query: 145 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 204
           +++++Y K                               CG +  AR +FDR  + + + 
Sbjct: 299 AMIDMYAK-------------------------------CGCVESAREIFDRMEEKNVIS 327

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           W++MI+ Y  + +  +AL LF  M  +G+L D  TLAS+L AC +   L   +QVH  A 
Sbjct: 328 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQAS 387

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
             G++ ++IVA+ L+  YS      DA  LF  + V D++  + M+  ++  G   +   
Sbjct: 388 VHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFG 447

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
            FR +        N     L   G+  E+L LF  M +  +  DK ++ +V+ ACA + +
Sbjct: 448 TFRELIRCGARPDNYT---LPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGA 504

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD---------------- 420
           +     +   +       D I+ T+++D + KCG        +D                
Sbjct: 505 MHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAA 564

Query: 421 ---------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                    AL LF  M  +G+ P  IT  ++L AC H GLV+EG ++F  M   Y +  
Sbjct: 565 YGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRA 624

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           +++HY+C+VDL  RAG L+EA+ LIE M  E D G+W + L  C  H D  L  K A  +
Sbjct: 625 DVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSL 684

Query: 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +EL P+N   YI LS+I+A +G WE  +  RD+M ++ + K+PG +W +
Sbjct: 685 LELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIE 733



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 181/460 (39%), Gaps = 115/460 (25%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LI  Y+    ++DA  +FD      SV W+ M+ G+    +       F ++ R G   D
Sbjct: 119 LIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPD 178

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-----------DVIVASALLDTYSKR 285
             TL  V+ AC  L  L+         C+  + D           D++  + ++  Y++ 
Sbjct: 179 NYTLPFVIRACRDLKNLQMALVDMYVKCR-EIEDARFLFDKMQERDLVTWTVMIGGYAEC 237

Query: 286 GMPSDACKLFSELK---------------------------------------VYDTILL 306
           G  +++  LF +++                                         D IL 
Sbjct: 238 GKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG 297

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
             MI +Y+ CG +E A+ IF  M  K++ISW++MI     +G   +ALDLF  M    + 
Sbjct: 298 TAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGML 357

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC--KCGYDALAL 424
            DK +LAS++ AC N  +L    QV A+ ++ G+  + I++  LV FY   +   DA  L
Sbjct: 358 PDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGL 417

Query: 425 FNEM--RNTGVKPTII--------------TFTAILS--------ACDHCGLVKEGQKWF 460
           F+ M  R++     ++              TF  ++             CG   E    F
Sbjct: 418 FDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLF 477

Query: 461 DAMKWQ---------------------YHIDPEIEHY-------------SCMVDLFARA 486
           D M+ +                      H    I+ Y             + M+D+ A+ 
Sbjct: 478 DKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKC 537

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           GC+  A  + ++M  E +V  WS+++    A+G  G GRK
Sbjct: 538 GCVESAREIFDRME-EKNVISWSAMI---AAYGYHGQGRK 573



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 138/324 (42%), Gaps = 63/324 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL +C    ++   +Q+H      G+L + L +AN+L+  Y       DA  LFD M
Sbjct: 363 LASLLYACINCRNLTQVRQVHAQASVHGMLQN-LIVANKLVHFYSYYRALDDAYGLFDGM 421

Query: 68  PRRNCFSWNAMIEGFMKL----------------------------GHKEKSLQLFNVMP 99
             R+  SW+ M+ GF K+                            G+  +SL LF+ M 
Sbjct: 422 CVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMR 481

Query: 100 QKNDF--SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
           ++        M+   FA A L A+   + I  +I       D +LG+++++++ KCG   
Sbjct: 482 EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 541

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
           SA ++ + M+E +    SA+I+ Y                             GY  + +
Sbjct: 542 SAREIFDRMEEKNVISWSAMIAAY-----------------------------GY--HGQ 570

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVAS 276
             +AL LF  M R+G+L +  TL S+L ACS  G +E G +      +   V  DV   +
Sbjct: 571 GRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYT 630

Query: 277 ALLDTYSKRGMPSDACKLFSELKV 300
            ++D   + G   +A KL   + V
Sbjct: 631 CVVDLLGRAGRLDEALKLIESMTV 654



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 118/238 (49%), Gaps = 19/238 (7%)

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           + ++ N +I  YS    ++DA  +F  M  +  +SW+ M+ G ++ G  I     F  + 
Sbjct: 112 NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 171

Query: 362 KLDLRMDKFSLASVISACANISSLELG---------EQVFARVTIIGL-DSDQIISTSLV 411
           +   R D ++L  VI AC ++ +L++          E   AR     + + D +  T ++
Sbjct: 172 RCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMI 231

Query: 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM-KWQYH 468
             Y +CG   ++L LF +MR  GV P  +    ++ AC   G + + +   D + + ++ 
Sbjct: 232 GGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQ 291

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           +D  +   + M+D++A+ GC+  A  + ++M  E +V  WS+++    A+G  G GRK
Sbjct: 292 LDVILG--TAMIDMYAKCGCVESAREIFDRME-EKNVISWSAMI---AAYGYHGQGRK 343


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 186/696 (26%), Positives = 309/696 (44%), Gaps = 154/696 (22%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLK-------KGILNSTLPIANRLLQMYMRCGNP 57
           ++Y   LL+SC    S+  GK +H H LK         + N  +P   +L+ +Y+ C   
Sbjct: 9   LEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPF-EKLVDLYIACSEL 67

Query: 58  TDALLLFDEMPRR--NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLIS 111
             A  +FD+MP R  N   WN +I  +   G  E+++ L+  M       N F++  ++ 
Sbjct: 68  KIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLK 127

Query: 112 GFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
             A + L     G++IH  I                                 +  E + 
Sbjct: 128 --ACSALKEASEGREIHCDIK-------------------------------RLRLESNV 154

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
           +  +AL+  YA CG ++DA+ VFD+      V WNSMISG+  +    + +       +N
Sbjct: 155 YVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQN 214

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-------------------------- 265
            V  ++ST+  VL A + +  L HGK++HG   +                          
Sbjct: 215 DVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYA 274

Query: 266 ------VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-------------------- 299
                 +G++ + +  SA++  Y       +A +LF +L                     
Sbjct: 275 RRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRV 334

Query: 300 ----------------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
                                 V D ++ NT++++Y+ CG I  A   F  M  +  +S+
Sbjct: 335 CANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSF 394

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
            ++I G  QNG+  E L +F  M    +  +K +LASV+ ACA+++ L  G        I
Sbjct: 395 TAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAII 454

Query: 398 IGLDSDQIISTSLVDFYCKCG---------------------------------YDALAL 424
            G  +D +I  +L+D Y KCG                                  +AL L
Sbjct: 455 CGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLL 514

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F+ M++ G+KP  +TF  ++SAC H GLV EG+ WF+AM   + I P +EHY+CMVDL +
Sbjct: 515 FDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLS 574

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544
           RAG   E  + IE+MP E DV +W ++L  C  + +  LG  V++++ +L PE+   ++ 
Sbjct: 575 RAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVL 634

Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           LS++++  G W+ ++ +R   +E+   K PGCSW +
Sbjct: 635 LSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIE 670


>gi|357508205|ref|XP_003624391.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499406|gb|AES80609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 709

 Score =  275 bits (703), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 177/613 (28%), Positives = 290/613 (47%), Gaps = 104/613 (16%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M  R +    LL+S     +   G  +H +F+K G +  TL + N LL MY++C + T A
Sbjct: 1   MAKREELYINLLRSYAQDSNFLKGTAIHAYFIK-GHIPFTLFLQNHLLNMYIKCKDLTSA 59

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAK 115
           L LFDEMP RN  SW++++ G +  G    +L LF+ M ++     N+F++   +   + 
Sbjct: 60  LQLFDEMPERNVVSWSSVMTGCVHNGGASDALSLFSCMHREGFVKPNEFTFVSALQACSL 119

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           ++     Y  QI+S ++ +GL                               E + F L+
Sbjct: 120 SENVTQAY--QIYSLVVRSGL-------------------------------ECNVFLLN 146

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           A ++     GK+ +A ++F+ +    +V WN+M+ GY+  + + +  + +  M R GV  
Sbjct: 147 AFLTALVRNGKLTEALQIFETSPIRDTVTWNTMMGGYLEFSSE-QIPVFWRYMNREGVKP 205

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  T AS L+  +++  L+ G QVH    + G  DD+ V ++L+D Y K           
Sbjct: 206 DEFTFASALTGLATISSLKMGMQVHAQLVRSGYGDDICVGNSLVDMYLKN---------- 255

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                                 ++E+    F  +P+K + SW  M  G  Q G P  AL 
Sbjct: 256 ---------------------QKLEEGFKAFDEIPHKDVCSWTQMADGCLQWGEPRMALA 294

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           +   M K+ ++ +KF+LA+ ++ACA ++S+E G+Q       +G D D  +  +L+D Y 
Sbjct: 295 VIAKMKKMGVKPNKFTLATALNACACLASMEEGKQFHGLRIKLGSDVDVCVDNALLDMYA 354

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +AL +F+EM+ T V+P  ITF  
Sbjct: 355 KCGCMDSAWTVFRSTNSRSVVSWTTMIMACAQNGQPGEALQIFDEMKETSVEPNYITFIC 414

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L AC   G V EG K+  +M   Y I P  +HY CMV +  RAG + EA  LI +MPF 
Sbjct: 415 VLYACSQGGFVDEGWKYLSSMDKDYGIIPGEDHYICMVSILGRAGLIKEAKELILRMPFH 474

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
             V +W ++L  C  HGD   G+  AE  I+ D  +  +Y+ LS++ A +  W+    +R
Sbjct: 475 PGVRVWQTLLSACQIHGDVETGKLAAEHAIKHDKNDPSSYVLLSNMLAETSNWDCVVSLR 534

Query: 563 DIMREKHVGKLPG 575
           ++M  ++V K+PG
Sbjct: 535 ELMETRNVKKVPG 547


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  275 bits (703), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 180/611 (29%), Positives = 285/611 (46%), Gaps = 115/611 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C     +  G+ +H     +GI +  L  A  L  MY +C  P DA  +FD M   
Sbjct: 65  LLKLCAARGDLATGRAVHAQLAARGIDSEALA-ATALANMYAKCRRPADARRVFDRM--- 120

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL--------- 121
                                       P ++  +WN L++G+A+  LA +         
Sbjct: 121 ----------------------------PVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152

Query: 122 -EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
            E G++  S  LV      SVL +              A  + + ++E  +   +A++  
Sbjct: 153 EEEGERPDSITLV------SVLPACANARALAACREAHAFAIRSGLEELVNVA-TAILDA 205

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDAST 239
           Y  CG +  AR VFD     +SV WN+MI GY  N +  EAL LF++M   GV + D S 
Sbjct: 206 YCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSV 265

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           LA+ L AC  LG L+ G +VH    ++G+  +V V                         
Sbjct: 266 LAA-LQACGELGCLDEGMRVHELLVRIGLDSNVSV------------------------- 299

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                 +N +IT+YS C R++ A H+F  +  ++ +SWN+MI+G +QNG   +A+ LF  
Sbjct: 300 ------MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTR 353

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M   +++ D F+L SVI A A+IS       +      + LD D  + T+L+D Y KCG 
Sbjct: 354 MQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGR 413

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF EM++ G+ P   TF ++LSA
Sbjct: 414 VNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSA 473

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GLV EG+++F +MK  Y ++P +EHY  MVDL  RAG L+EA   I++MP +  + 
Sbjct: 474 CSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLS 533

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           ++ ++L  C  H +  L  + A+++ EL P+    ++ L++I+A +  W+  + +R  M 
Sbjct: 534 VYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAME 593

Query: 567 EKHVGKLPGCS 577
           +  + K PG S
Sbjct: 594 KNGLQKTPGWS 604



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 142/333 (42%), Gaps = 67/333 (20%)

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL  F  M   G      T  S+L  C++ G L  G+ VH      G+  + + A+AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K   P+DA ++F  + V D                                ++WN++
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDR-------------------------------VAWNAL 131

Query: 341 IVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           + G ++NG    A+++   M + +  R D  +L SV+ ACAN  +L    +  A     G
Sbjct: 132 VAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSG 191

Query: 400 LDSDQIISTSLVDFYCKCG---------------------------------YDALALFN 426
           L+    ++T+++D YCKCG                                  +ALALFN
Sbjct: 192 LEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFN 251

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
            M   GV  T ++  A L AC   G + EG +  + +  +  +D  +   + ++ ++++ 
Sbjct: 252 RMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLV-RIGLDSNVSVMNALITMYSKC 310

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             ++ A ++ +++     V  W++++ GC  +G
Sbjct: 311 KRVDLASHVFDELDRRTQVS-WNAMILGCAQNG 342


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  275 bits (703), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 152/444 (34%), Positives = 239/444 (53%), Gaps = 33/444 (7%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D F  +  +  YA+CG++N AR VFD  +    V WN+MI  Y       EA  LF +M+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
            + V+ D   L +++SAC   G + + + ++    +  V  D  + +AL+  Y+  G   
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
            A + F ++ V +  +   M++ YS CGR++DA+ IF     K L+ W +MI    ++  
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           P EAL +F  M    ++ D  S+ SVISACAN+  L+  + V + + + GL+S+  I+ +
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNA 384

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           L++ Y KCG                                  DAL+LF  M+   V+P 
Sbjct: 385 LINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPN 444

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            +TF  +L  C H GLV+EG+K F +M  +Y+I P++EHY CMVDLF RA  L EA+ +I
Sbjct: 445 EVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVI 504

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
           E MP  ++V +W S++  C  HG+  LG+  A+R++EL+P++  A + +S+I+A    WE
Sbjct: 505 ESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWE 564

Query: 557 KSSLIRDIMREKHVGKLPGCSWAD 580
               IR +M EK+V K  G S  D
Sbjct: 565 DVRNIRRVMEEKNVFKEKGLSRID 588


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  275 bits (703), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 172/611 (28%), Positives = 307/611 (50%), Gaps = 77/611 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     + +G Q+H   +K G  +  + +AN L+ +Y +CG    A+ LFDEMP+R
Sbjct: 209 ILTACIRSLELEMGLQVHALAIKLG-YSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQR 267

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALEYGK 125
           +  SWN MI   +K    EK+L+LF V+ Q      + F+ + L++  A+    A   G+
Sbjct: 268 DIASWNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCH--ARIQGR 325

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +IH++ +  GL+ +  + ++++  Y +CG  N    +   M   D    + +I+ Y   G
Sbjct: 326 EIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFG 385

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++ A  +F++  + +SV +N++++G+  NNE  +AL LF +M + G      TL  V++
Sbjct: 386 LVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVIN 445

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC  L  LE  +Q+HG   K G   +  + +AL+D  SK                     
Sbjct: 446 ACGLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSK--------------------- 484

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCN-MNK 362
                     CGR++DA  +F+++     + I   SMI G ++NG P EA+ LF    ++
Sbjct: 485 ----------CGRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSE 534

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
             + +D+ +  S++  C  +   E+G+Q+  +    G  ++  +  S++  Y KC     
Sbjct: 535 GTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYNIDD 594

Query: 418 ----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                       G +ALA+++ M   G+KP  ITF  I+SA   
Sbjct: 595 AIKAFNTMPGHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDAITFVLIVSAYKF 654

Query: 450 CG--LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
               L+ E +  F +MK  + ++P  EHY+ +V +    G L EA  LI +MPF+ +V +
Sbjct: 655 TSSNLLDECRSLFLSMKMIHDLEPTSEHYASLVGVLGYWGLLEEAEELINKMPFDPEVSV 714

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L GC  H +  +G++VA+ +I ++P +   Y+ +S+++A SG W  S ++R+ MR+
Sbjct: 715 WRALLDGCRLHANTSIGKRVAKHIIGMEPRDPSTYVLVSNLYAASGRWHCSEMVRENMRD 774

Query: 568 KHVGKLPGCSW 578
           + + K P  SW
Sbjct: 775 RGLRKHPCRSW 785



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/565 (24%), Positives = 254/565 (44%), Gaps = 83/565 (14%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            +D L  LL+    +  I + + LH   LK   L     + N ++  Y++ G   DA  +
Sbjct: 103 EVDDLFNLLRLSVKYTDIDLARALHASILK---LGEDTHLGNAVIAAYIKLGLVVDAYEV 159

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLA 119
           F  M   +  S++A+I  F KL  + +++QLF  M     + N++S+  +++   ++   
Sbjct: 160 FMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRS--L 217

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            LE G Q+H+  +  G      + ++L+ LYGK                           
Sbjct: 218 ELEMGLQVHALAIKLGYSQLVFVANALIGLYGK--------------------------- 250

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDAS 238
               CG ++ A  +FD         WN+MIS  +      +AL LF  + +N G   D  
Sbjct: 251 ----CGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKGFKADQF 306

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL+++L+AC+       G+++H +A ++G+ +++ V++A++  Y++ G  +    LF  +
Sbjct: 307 TLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERM 366

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
            V D I    MIT Y   G ++ A  +F  MP K+ +S+N+++ G  +N   ++AL+LF 
Sbjct: 367 PVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFV 426

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M +    +  F+L  VI+AC  +  LE+  Q+   +   G  S+  I  +L+D   KCG
Sbjct: 427 RMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCG 486

Query: 419 Y--DALALFNEMRNTGVKPTI----------------------------------ITFTA 442
              DA  +F  +   G    I                                  + FT+
Sbjct: 487 RMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTS 546

Query: 443 ILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           IL  C   G  + G++    A+K  +H   E+   + ++ ++++   +++A+     MP 
Sbjct: 547 ILGVCGTLGFHEVGKQIHCQALKTGFH--AELGVGNSIISMYSKCYNIDDAIKAFNTMPG 604

Query: 502 EADVGMWSSILRGCVAH--GDKGLG 524
             DV  W+ ++ G + H  GD+ L 
Sbjct: 605 H-DVVSWNGLIAGQLLHRQGDEALA 628



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 102/204 (50%), Gaps = 23/204 (11%)

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISAC------------ANISS-LELGEQVFARVTI 397
           IE  DLF N+ +L ++     LA  + A             A I++ ++LG  V A    
Sbjct: 102 IEVDDLF-NLLRLSVKYTDIDLARALHASILKLGEDTHLGNAVIAAYIKLGLVVDAYEVF 160

Query: 398 IGLDSDQIIS-TSLVDFYCKCGYD--ALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
           +G+ +  ++S ++L+  + K   +  A+ LF  MR +G++P   +F AIL+AC     ++
Sbjct: 161 MGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELE 220

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            G +   A+  +      +   + ++ L+ + GCL+ A++L ++MP + D+  W++++  
Sbjct: 221 MGLQ-VHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMP-QRDIASWNTMISS 278

Query: 515 CVAHGDKGLGRKVAERMIELDPEN 538
            V    KGL  + A  +  +  +N
Sbjct: 279 LV----KGLSYEKALELFRVLNQN 298


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 163/547 (29%), Positives = 271/547 (49%), Gaps = 80/547 (14%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
           F  N++++ + K G  E + ++F+ +P++N  SW  ++SG       +++ G      +L
Sbjct: 158 FVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSG-------SIQNGIAEEGLVL 210

Query: 133 VNGLDFDSVLGS--SLVNLYGKCGDFNSANQ-------VLNMMKEPDDFCLSALISGYAN 183
            N +  D+V  S  ++V++   C      +Q       V+      + F  ++L+  YA 
Sbjct: 211 FNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAK 270

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C K+ DARRVFD       V+W +MI GY  N    +AL LF   +   ++ ++ T+A+V
Sbjct: 271 CEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATV 330

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           +SA + L  L  G+ VH    K+G ++  +V +AL+D Y+K                   
Sbjct: 331 ISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAK------------------- 371

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       C  + +A  IF  +  K +++WNSM+ G S+NG   E+L LF  M   
Sbjct: 372 ------------CQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQ 419

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
            +  D  S+ + +SAC  ++ L +G+            S+  ++T+L++ Y KC      
Sbjct: 420 GISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSA 479

Query: 418 --------------------GYD-------ALALFNEMRNTGVKPTIITFTAILSACDHC 450
                               GY        ++ LFNEM    + P  + FT+ILSAC H 
Sbjct: 480 QRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHT 539

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G+V  G+++FD+M   ++I P ++HY+CMVD+ ARAG L EA+  I+ MP +A + +W S
Sbjct: 540 GMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGS 599

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
            L GC  H     G +  ++M  L PE    Y+ +S+++ + G W+KS  IR  M+E+ +
Sbjct: 600 FLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGL 659

Query: 571 GKLPGCS 577
            KLPGCS
Sbjct: 660 VKLPGCS 666



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/515 (25%), Positives = 216/515 (41%), Gaps = 106/515 (20%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--- 101
            +LL  Y   G+   A  + D  PR + +++  M+   +  G    ++ L   M ++   
Sbjct: 59  TKLLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPA 118

Query: 102 ---NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
               D   ++ +    ++  A   YG+++H  ++  G                       
Sbjct: 119 AAQADVVLSLALKACVRS--ADFRYGRRLHCDVVKAG----------------------- 153

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
                      D F +++L+  YA  G + +AR+VFDR  + + V W SM+SG I N   
Sbjct: 154 ---------GADGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQNGIA 204

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
            E L+LF++MR++ V     T+ SVL+AC+ LG L  G+ +HG   K G+  +  ++++L
Sbjct: 205 EEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASL 264

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           LD Y+K     DA ++F EL+  D +L   M                             
Sbjct: 265 LDMYAKCEKVEDARRVFDELEFVDIVLWTAM----------------------------- 295

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
             IVG +QN  P++AL LF +   + +  +  ++A+VISA A +  L LG  V A    +
Sbjct: 296 --IVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKL 353

Query: 399 GLDSDQIISTSLVDFYCKC--------------------------GY-------DALALF 425
           G     ++  +LVD Y KC                          GY       ++L LF
Sbjct: 354 GTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLF 413

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
           N MR  G+ P  I+    LSAC     +  G K F     +Y     I   + +++L+++
Sbjct: 414 NRMRMQGISPDAISVVNALSACVCLADLHIG-KGFHTYAIKYAFMSNIYVNTALLNLYSK 472

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
              L  A  +   M     V  WS+++ G    GD
Sbjct: 473 CADLPSAQRVFNDMTDRNSV-TWSAMIGGYGMQGD 506



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     +H+GK  H + +K   + S + +   LL +Y +C +   A  +F++M  RN
Sbjct: 432 LSACVCLADLHIGKGFHTYAIKYAFM-SNIYVNTALLNLYSKCADLPSAQRVFNDMTDRN 490

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
             +W+AMI G+   G    S+ LFN M ++N
Sbjct: 491 SVTWSAMIGGYGMQGDSAGSIDLFNEMLKEN 521


>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
          Length = 540

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 152/422 (36%), Positives = 230/422 (54%), Gaps = 13/422 (3%)

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           E D F  +AL+  YA CG++ DAR+VFD   D   V W  M+  Y       EALLLFH 
Sbjct: 101 EVDGFVGTALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHS 160

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M+R+ V+ D   +A+VLS C+    L  GK +H +      + D  V+ AL++ Y+    
Sbjct: 161 MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCAD 220

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
              A KL++ +   D +L  TM+  Y+  G++E A  IF  MP K ++SW++MI G +++
Sbjct: 221 MEMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAES 280

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASV-------ISACANISSLELGEQVFARVTIIGL 400
             P+EAL+LF +M +  ++ D+ ++ S+       I   +   SL L   VF  +     
Sbjct: 281 SKPMEALNLFHDMQRSGVQPDEITMLSILPIGNALIDMFSKCGSLTLALDVFNAMP---- 336

Query: 401 DSDQIISTSLVDFYCKC--GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
             + +  TS++        G  AL LF  M++ G++P  +TF  +L AC H GLV+EG+ 
Sbjct: 337 QKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRL 396

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
            F  M  QY I+P  EHY CMVDL  RA  L +A +LI+ M    +V +W S+L  C  H
Sbjct: 397 LFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMH 456

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           GD  LG   A++++ELDP +  A + LS+I+A  G W     +R +M+ +   K  GCSW
Sbjct: 457 GDLELGAFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVKEVRGVMKVQGTWKKKGCSW 516

Query: 579 AD 580
            +
Sbjct: 517 ME 518



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 212/479 (44%), Gaps = 76/479 (15%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L++ Y  CG   DA  +FD MP R+  +W  M++ + +  + E++L LF+ M +  
Sbjct: 106 VGTALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSR 165

Query: 103 DFSWNMLISGFAK--ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
                ++I+      A    L +GK IHS++LV+    D+ +  +L+N+Y  C D   A 
Sbjct: 166 VVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAE 225

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           ++ N + E D    + ++ GYA  GK+  A  +F+   +   V W++MI+GY  +++  E
Sbjct: 226 KLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPME 285

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL LFH M+R+GV  D  T+ S+L                             + +AL+D
Sbjct: 286 ALNLFHDMQRSGVQPDEITMLSILP----------------------------IGNALID 317

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            +SK                               CG +  A  +F  MP K++++W S+
Sbjct: 318 MFSK-------------------------------CGSLTLALDVFNAMPQKNVVTWTSI 346

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA-RVTIIG 399
           I   + +G    AL LF NM    ++ +  +   ++ AC +   +E G  +F   V    
Sbjct: 347 ITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYR 406

Query: 400 LDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
           ++        +VD   +      A  + +++  ++P ++ + ++L+AC   G ++ G   
Sbjct: 407 IEPMHEHYGCMVDLLGRAKLLGQAA-DLIQSMHLRPNVVIWGSLLAACRMHGDLELGA-- 463

Query: 460 FDAMKWQYHIDPEIEHYSCMV---DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           F A K    +DP   H    V   +++A  G  N+   +   M  +   G W    +GC
Sbjct: 464 FAAKKI-LELDP--NHGGAQVLLSNIYAEYGNWNDVKEVRGVMKVQ---GTWKK--KGC 514



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 158/378 (41%), Gaps = 23/378 (6%)

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDAS-TLASVLSACSSLGFLEHGKQVHGHAC 264
            + IS   +      AL  F  +RR G+       L S+L A +   F       HG A 
Sbjct: 37  RAYISAIRAATAPRLALAAFACLRRVGLPAPGRRALPSLLRAIALARFPGTAGAAHGLAF 96

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
           +VG   D  V +AL+  Y+  G   DA K+F  +   D +    M+  Y      E+A  
Sbjct: 97  RVGAEVDGFVGTALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALL 156

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI-- 382
           +F +M    ++    +I  +    +    L     ++   L  D    A V  A  N+  
Sbjct: 157 LFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYA 216

Query: 383 --SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTII 438
             + +E+ E+++ RV+    + D ++ST++V  Y K G   +A  +FN M    V    +
Sbjct: 217 SCADMEMAEKLYNRVS----EKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDV----V 268

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS------CMVDLFARAGCLNEA 492
           +++A+++         E    F  M+       EI   S       ++D+F++ G L  A
Sbjct: 269 SWSAMIAGYAESSKPMEALNLFHDMQRSGVQPDEITMLSILPIGNALIDMFSKCGSLTLA 328

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI-ELDPENACAYIQLSSIFAT 551
           +++   MP + +V  W+SI+     HGD      + E M  E    N   ++ L      
Sbjct: 329 LDVFNAMP-QKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCH 387

Query: 552 SGEWEKSSLIRDIMREKH 569
           +G  E+  L+  IM +++
Sbjct: 388 AGLVEEGRLLFKIMVQQY 405



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S LPI N L+ M+ +CG+ T AL +F+ MP++N  +W ++I      G    +L LF  M
Sbjct: 307 SILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENM 366


>gi|15236431|ref|NP_192561.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208454|sp|Q9SUF9.1|PP305_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g08210
 gi|5262194|emb|CAB45791.1| putative protein [Arabidopsis thaliana]
 gi|7267461|emb|CAB81157.1| putative protein [Arabidopsis thaliana]
 gi|332657209|gb|AEE82609.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 686

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 183/609 (30%), Positives = 299/609 (49%), Gaps = 78/609 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     I +G  ++    K+  L   + + N ++ MY++ G   +A   F E+ R 
Sbjct: 113 VLKACGLVGDIQLGILVYERIGKEN-LRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRP 171

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KADLAALEYGKQIHS 129
           +  SWN +I G+ K G  ++++ LF+ MPQ N  SWN LISGF  K    ALE+  ++  
Sbjct: 172 SSTSWNTLISGYCKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKGSPRALEFLVRMQR 231

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALISGYANCG 185
                GL  D       +      G      Q    V+    E   F +SALI  Y+NCG
Sbjct: 232 E----GLVLDGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESSPFAISALIDMYSNCG 287

Query: 186 KMNDARRVFDR---TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            +  A  VF +     ++S  +WNSM+SG++ N E+  AL L  ++ ++ +  D+ TL+ 
Sbjct: 288 SLIYAADVFHQEKLAVNSSVAVWNSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSG 347

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
            L  C +   L  G QVH      G   D IV S L+D                      
Sbjct: 348 ALKICINYVNLRLGLQVHSLVVVSGYELDYIVGSILVD---------------------- 385

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                    ++++ G I+DA  +F  +PNK +I+++ +I G  ++G    A  LF  + K
Sbjct: 386 ---------LHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIK 436

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
           L L  D+F +++++  C++++SL  G+Q+       G +S+ + +T+LVD Y KCG    
Sbjct: 437 LGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDN 496

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +A   F++M N G++P  +TF  +LSAC H
Sbjct: 497 GVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRH 556

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GL++E +   + MK +Y ++P +EHY C+VDL  +AG   EA  LI +MP E D  +W+
Sbjct: 557 SGLLEEARSTLETMKSEYGLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWT 616

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           S+L  C  H + GL   +AE++++  P++   Y  LS+ +AT G W++ S +R+  + K 
Sbjct: 617 SLLTACGTHKNAGLVTVIAEKLLKGFPDDPSVYTSLSNAYATLGMWDQLSKVREAAK-KL 675

Query: 570 VGKLPGCSW 578
             K  G SW
Sbjct: 676 GAKESGMSW 684



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 161/614 (26%), Positives = 264/614 (42%), Gaps = 87/614 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD ++  +A  L+ C    +   G+ +  H +K+GI  +   IAN ++ MY+     +DA
Sbjct: 3   MDLKL--IAAGLRHCGKVQAFKRGESIQAHVIKQGISQNVF-IANNVISMYVDFRLLSDA 59

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAK 115
             +FDEM  RN  +W  M+ G+   G   K+++L+  M        N+F ++ ++   A 
Sbjct: 60  HKVFDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLK--AC 117

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
             +  ++ G  ++  I    L  D VL +S+V++Y K G    AN     +  P     +
Sbjct: 118 GLVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWN 177

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
            LISGY   G M++A  +F R    + V WN +ISG++       AL    +M+R G++ 
Sbjct: 178 TLISGYCKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKG-SPRALEFLVRMQREGLVL 236

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D   L   L ACS  G L  GKQ+H    K G+       SAL+D               
Sbjct: 237 DGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESSPFAISALID--------------- 281

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIF---RTMPNKSLISWNSMIVGLSQNGSPIE 352
                           +YS+CG +  A  +F   +   N S+  WNSM+ G   N     
Sbjct: 282 ----------------MYSNCGSLIYAADVFHQEKLAVNSSVAVWNSMLSGFLINEENEA 325

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL L   + + DL  D ++L+  +  C N  +L LG QV + V + G + D I+ + LVD
Sbjct: 326 ALWLLLQIYQSDLCFDSYTLSGALKICINYVNLRLGLQVHSLVVVSGYELDYIVGSILVD 385

Query: 413 FYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCG-----------LVKEGQ-- 457
            +   G   DA  LF+ + N      II F+ ++  C   G           L+K G   
Sbjct: 386 LHANVGNIQDAHKLFHRLPN----KDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDA 441

Query: 458 ------------KWFDAMKWQYHI---------DPEIEHYSCMVDLFARAGCLNEAVNLI 496
                           ++ W   I         + E    + +VD++ + G ++  V L 
Sbjct: 442 DQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLF 501

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEW 555
           + M  E DV  W+ I+ G   +G      +   +MI +  E N   ++ L S    SG  
Sbjct: 502 DGM-LERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLL 560

Query: 556 EKSSLIRDIMREKH 569
           E++    + M+ ++
Sbjct: 561 EEARSTLETMKSEY 574



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 20/196 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L+ C++  S+  GKQ+H   +KKG   S    A  L+ MY++CG   + ++LFD M
Sbjct: 446 VSNILKVCSSLASLGWGKQIHGLCIKKG-YESEPVTATALVDMYVKCGEIDNGVVLFDGM 504

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWNMLI-----SGFAKADL 118
             R+  SW  +I GF + G  E++ + F    N+  + N  ++  L+     SG  +   
Sbjct: 505 LERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLLEEAR 564

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSAL 177
           + LE  K  +      GL+        +V+L G+ G F  AN+++N M  EPD    ++L
Sbjct: 565 STLETMKSEY------GLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWTSL 618

Query: 178 ISGYANCGKMNDARRV 193
           ++    CG   +A  V
Sbjct: 619 LTA---CGTHKNAGLV 631


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 167/559 (29%), Positives = 285/559 (50%), Gaps = 71/559 (12%)

Query: 56  NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK 115
           NP D  L      RR    +  +IE F +    ++++   + +PQ +   ++ LI+   +
Sbjct: 20  NPKDTTLSHHSEHRR----FEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLR 75

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
                LE GK++H+H   +      V+ + L+++Y KCG    A  + + + + D    +
Sbjct: 76  H--RKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWN 133

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
            +ISGYAN G++  AR++FD      +  WN++ISGY+S     EAL LF  M+ N    
Sbjct: 134 TMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSN 193

Query: 236 -DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  TL+S L+A +++  L  GK++HG+  + G+  D +V +ALLD Y K          
Sbjct: 194 CNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGK---------- 243

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                CG + +A+ IF  M +K ++SW +MI    ++G   E  
Sbjct: 244 ---------------------CGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGF 282

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LF ++    +R ++++ A V++ACA++++ ++G++V   +T +G D     +++LV  Y
Sbjct: 283 SLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVY 342

Query: 415 CKCGYD---------------------------------ALALFNEMRNTGVKPTIITFT 441
            KCG                                   AL  F  +  +G KP  ITF 
Sbjct: 343 SKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFV 402

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            +LSAC H GLV  G ++F ++K ++ +    +HY+C++DL AR+G   EA N+I+ MP 
Sbjct: 403 GVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPM 462

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           + D  +W+S+L GC  HG+  L  + A+ + EL+PEN   YI LS+I+A +G W + + +
Sbjct: 463 KPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKV 522

Query: 562 RDIMREKHVGKLPGCSWAD 580
           R+ M  + + K PG SW +
Sbjct: 523 RNDMDNRGIVKKPGKSWIE 541



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/548 (27%), Positives = 246/548 (44%), Gaps = 126/548 (22%)

Query: 5   IDYLARLLQ-----------SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR 53
           +DYL R+ Q           +C  H  + +GK++H H      +   + I+NRL+ MY +
Sbjct: 52  VDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIV-ISNRLIHMYAK 110

Query: 54  CGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF 113
           CG+  DA +LFDE+P+++  SWN MI G+  +G  E++ +LF+ MP +++FSWN +ISG+
Sbjct: 111 CGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGY 170

Query: 114 AKAD--LAALE--------------------------------YGKQIHSHILVNGLDFD 139
                 + AL+                                 GK+IH +++ +GL+ D
Sbjct: 171 VSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELD 230

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
            V+ ++L++LYGKCG  N                               +AR +FD+  D
Sbjct: 231 EVVWTALLDLYGKCGSLN-------------------------------EARGIFDQMAD 259

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
              V W +MI     +    E   LF  +  +GV  +  T A VL+AC+ L   + GK+V
Sbjct: 260 KDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEV 319

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           HG+  +VG       ASAL+  YSK G    A ++F++                      
Sbjct: 320 HGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQ---------------------- 357

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
                    MP   L+SW S+IVG +QNG P  AL  F ++ +   + D+ +   V+SAC
Sbjct: 358 ---------MPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSAC 408

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA---LFNEMRNT----G 432
            +   +++G + F  V     +   ++ T+  D Y  C  D LA    F E  N      
Sbjct: 409 THAGLVDIGLEYFHSVK----EKHGLVHTA--DHYA-CVIDLLARSGRFKEAENIIDNMP 461

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNE 491
           +KP    + ++L  C   G ++  ++   A K  + ++PE    Y  + +++A AG   E
Sbjct: 462 MKPDKFLWASLLGGCRIHGNIELAER---AAKALFELEPENPATYITLSNIYANAGLWTE 518

Query: 492 AVNLIEQM 499
              +   M
Sbjct: 519 ETKVRNDM 526


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  275 bits (702), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 167/605 (27%), Positives = 293/605 (48%), Gaps = 98/605 (16%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L+ M++RCG    A  LF ++ R   F  N+M+ G+ KL   + +++ F  M +++
Sbjct: 175 VETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERD 234

Query: 103 DFSWNMLISGFAK---------------------------------ADLAALEYGKQIHS 129
             SWNM+I+  ++                                 A L +L +GKQ+H+
Sbjct: 235 VVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHA 294

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            ++ +    D  + S+L+ LY KCG F  A +V N ++                      
Sbjct: 295 KVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ---------------------- 332

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
                    D +SV W  +I G +     ++++ LF++MR   +  D   LA+++S C +
Sbjct: 333 ---------DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN 383

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
              L  G+Q+H    K G    ++V+++L+  Y+K G   +A  +FS +   D +   +M
Sbjct: 384 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMD 368
           IT YS  G I  A+  F  M  ++ I+WN+M+    Q+G+  + L ++  M ++ D+  D
Sbjct: 444 ITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------- 419
             +  ++   CA+I + +LG+Q+       GL  +  ++ + +  Y KCG          
Sbjct: 504 WVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFD 563

Query: 420 ------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                    A   F++M + G KP  I++ A+LS C H GLV+E
Sbjct: 564 LLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQE 623

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G+ +FD M   + I P +EH+SCMVDL  RAG L EA +LI++MP +    +W ++L  C
Sbjct: 624 GKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSAC 683

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             HG+  L    A+ + ELD  ++ +Y+ L+ I++ +G+ + S+ +R +MR+K + K PG
Sbjct: 684 KIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPG 743

Query: 576 CSWAD 580
            SW +
Sbjct: 744 YSWME 748



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 147/561 (26%), Positives = 263/561 (46%), Gaps = 82/561 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL-LLFDE 66
           LA  L+SC +  ++   + LH   +  G L S + + N LL  Y+ CG  +DA  LL  +
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVG-LASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYG 124
           +   N  + N M+ G+ K G    + +LF+ MP+++  SWN L+SG+ +A   L  LE  
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 125 KQIH--SHILVNGLDFDSVLGS------------------------------SLVNLYGK 152
             +H     L N   F  V+ S                              +LV+++ +
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVR 185

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
           CG  + A+++ + ++ P  FC +++++GYA    ++ A   F+   +   V WN MI+  
Sbjct: 186 CGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAAL 245

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
             +    EAL L  +M R GV  D++T  S L+AC+ L  L  GKQ+H    +     D 
Sbjct: 246 SQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP 305

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            VASAL++ Y+K                               CG  ++AK +F ++ ++
Sbjct: 306 YVASALIELYAK-------------------------------CGSFKEAKRVFNSLQDR 334

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
           + +SW  +I G  Q     ++++LF  M    + +D+F+LA++IS C N   L LG Q+ 
Sbjct: 335 NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLH 394

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
           +     G +   ++S SL+  Y KCG   +A  +F+ M     +  I+++T++++A    
Sbjct: 395 SLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS----ERDIVSWTSMITAYSQI 450

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG---- 506
           G + + +++FD M  +  I      ++ M+  + + G   + + +   M  + DV     
Sbjct: 451 GNIIKAREFFDGMATRNAIT-----WNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWV 505

Query: 507 MWSSILRGCVAHGDKGLGRKV 527
            + ++ RGC   G   LG ++
Sbjct: 506 TYVTLFRGCADIGANKLGDQI 526



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 212/460 (46%), Gaps = 48/460 (10%)

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM-MKEPDDFCLSAL 177
            AL   + +H  ++  GL     L ++L++ Y  CG  + A ++L   +KEP+    + +
Sbjct: 18  GALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIM 77

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLED 236
           ++GYA  G ++DA  +FDR        WN+++SGY       + L  F  M R+G  L +
Sbjct: 78  MNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPN 137

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           A T   V+ +C +LG  E   Q+ G   K     D  V +AL+D + + G    A +LFS
Sbjct: 138 AFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFS 197

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           +++       N+M+  Y+    I+ A   F  M  + ++SWN MI  LSQ+G   EAL L
Sbjct: 198 QIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGL 257

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
              M++  +R+D  +  S ++ACA + SL  G+Q+ A+V       D  ++++L++ Y K
Sbjct: 258 VVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAK 317

Query: 417 CG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
           CG   +A  +FN +++                              +++ W   I   ++
Sbjct: 318 CGSFKEAKRVFNSLQDR-----------------------------NSVSWTVLIGGSLQ 348

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           +            C +++V L  QM  E    D    ++++ GC    D  LGR++    
Sbjct: 349 YE-----------CFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLC 397

Query: 532 IELDPENACAYI-QLSSIFATSGEWEKSSLIRDIMREKHV 570
           ++     A      L S++A  G+ + +  +   M E+ +
Sbjct: 398 LKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI 437



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 157/369 (42%), Gaps = 46/369 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+  C     + +G+QLH   LK G  N  + ++N L+ +Y +CG+  +A  +F  M
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSLISLYAKCGDLQNAEFVFSSM 432

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
             R+  SW +MI  + ++G+  K+ + F+ M  +N  +WN ++  + +            
Sbjct: 433 SERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYS 492

Query: 116 ----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                                 AD+ A + G QI  H +  GL  +  + ++ + +Y KC
Sbjct: 493 AMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKC 552

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD----RTTDTSSVMWNSMI 209
           G  + A ++ +++   D    +A+I+GY+  G    A + FD    +      + + +++
Sbjct: 553 GRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVL 612

Query: 210 SGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           SG   +    E  L F  M R +G+       + ++      G L   K +     K+ +
Sbjct: 613 SGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLID---KMPM 669

Query: 269 IDDVIVASALLDTYSKRG---MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
                V  ALL      G   +   A K   EL   D+     +  +YS  G+ +D+  +
Sbjct: 670 KPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQV 729

Query: 326 FRTMPNKSL 334
            + M +K +
Sbjct: 730 RKLMRDKGI 738


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  275 bits (702), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 166/602 (27%), Positives = 295/602 (49%), Gaps = 85/602 (14%)

Query: 18  HHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWN 76
           +HSI+  +   +   +K   ++  +   N ++    + G   +A  LFDEM   +  +W 
Sbjct: 28  YHSINDYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWT 87

Query: 77  AMIEGFMKLGHKEKSLQLFN-VMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
            +I G++K G  E++ +LF+ V  +KN  +W  ++ G+ +++       K   +  L N 
Sbjct: 88  TVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSN-------KISDAEKLFNE 140

Query: 136 LDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           +   +V+  +++++ Y + G  +SA  +   M E +    + ++S  A CG++ +ARR+F
Sbjct: 141 MPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLF 200

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           DR  +   + W +MI+G   N    EA LLF +M                          
Sbjct: 201 DRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPER----------------------- 237

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
                           +V+  +A++  Y++     +A  LF  +   D    NTMIT   
Sbjct: 238 ----------------NVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLI 281

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLA 373
             G +  A+ +F  MP K++ISW +MI G  Q G   EAL +F  M   +  + ++ +  
Sbjct: 282 QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFV 341

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------- 418
           SV+ AC+N++ L  G+QV   ++         + ++L++ Y KCG               
Sbjct: 342 SVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTS 401

Query: 419 --------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                +A+  F EMR +G KP  +T+  +LSAC H GLV+EG K
Sbjct: 402 QRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLK 461

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
           +FD +     I    +HY+C+VDL  RAG L EA   IE++  +    +W ++L GC  H
Sbjct: 462 YFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVH 521

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            +  +G++ A++++E++PENA  Y+ LS+I+A++G+W +++ +R  M++K + K PGCSW
Sbjct: 522 ANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSW 581

Query: 579 AD 580
            +
Sbjct: 582 IE 583


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  275 bits (702), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 179/663 (26%), Positives = 302/663 (45%), Gaps = 139/663 (20%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           VG+Q+H   LK G L   + +   L+ MYM+  +  D   +FDEM  +N  SW +++ G+
Sbjct: 122 VGRQVHCQSLKSGFLED-VSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGY 180

Query: 83  MKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            + G  ++ + L N M  +    N F++  ++   A AD + +E G Q+H+ I+ NG +F
Sbjct: 181 ARNGLNDEVIHLINQMQMEGVNPNGFTFATVLG--ALADESIIEGGVQVHAMIVKNGFEF 238

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
            +                               F  +ALI  Y     + DA  VFD   
Sbjct: 239 TT-------------------------------FVCNALICMYLKSEMVGDAEAVFDSMV 267

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
              SV WN MI GY +     E   +FH+MR  GV    +   + L  CS    L   KQ
Sbjct: 268 VRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQ 327

Query: 259 VHGHACKVG--------------------------------VIDDVIVASALLDTYSKRG 286
           +H    K G                                   +V+  +A++  + +  
Sbjct: 328 LHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNN 387

Query: 287 MPSDACKLFSELK---------VYDTILL--------------------------NTMIT 311
               A  LF ++           Y T+L                             ++ 
Sbjct: 388 NNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLD 447

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
            Y   G + ++  +F ++P K +++W++M+ GL+Q     +A+++F  + K  ++ ++++
Sbjct: 448 AYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYT 507

Query: 372 LASVISACAN-ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK-------------- 416
            +SVI+AC++  +++E G+Q+ A     G  +   +S++L+  Y K              
Sbjct: 508 FSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQ 567

Query: 417 ------------CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                        GY        AL +F  M+N G+    +TF  +L+AC H GLV+EG+
Sbjct: 568 EERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGE 627

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           K+F+ M   YHID + EHYSCMVDL++RAG  ++A+++I  MPF A   +W ++L  C  
Sbjct: 628 KYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRV 687

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           H +  LG+  AE+++ L P +A  Y+ LS+I A +G WE+ + +R +M E+ V K  GCS
Sbjct: 688 HRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCS 747

Query: 578 WAD 580
           W +
Sbjct: 748 WIE 750



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/500 (24%), Positives = 206/500 (41%), Gaps = 108/500 (21%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  G Q+H   +K G   +T  + N L+ MY++     DA  +FD M  R+  +WN MI 
Sbjct: 221 IEGGVQVHAMIVKNGFEFTTF-VCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIG 279

Query: 81  GFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-ADLAALEYGKQIHSHILVNGLDF 138
           G+  +G   +  Q+F+ M       S  +  +     +    L + KQ+H  ++ NG +F
Sbjct: 280 GYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEF 339

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMK------------------------------- 167
              + ++L+  Y KC   + A ++ +M                                 
Sbjct: 340 AQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQM 399

Query: 168 -----EPDDFCLSALISG-------------------------------YANCGKMNDAR 191
                 P+ F  S +++G                               Y   G + ++ 
Sbjct: 400 SREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESA 459

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC-SSL 250
           RVF        V W++M++G     +  +A+ +F ++ + GV  +  T +SV++AC SS 
Sbjct: 460 RVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSA 519

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             +EHGKQ+H  A K G  + + V+SALL  YSK+G    A K+F+  +  D +  N+MI
Sbjct: 520 ATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMI 579

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
           T Y   G  + A  +F+ M N+                                L +D  
Sbjct: 580 TGYGQHGDAKKALEVFQIMQNQG-------------------------------LPLDDV 608

Query: 371 SLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCG-YD-ALALFNE 427
           +   V++AC +   +E GE+ F   +    +D      + +VD Y + G +D A+ + N 
Sbjct: 609 TFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIING 668

Query: 428 MRNTGVKPTIITFTAILSAC 447
           M      PTI  +  +L+AC
Sbjct: 669 MPFPA-SPTI--WRTLLAAC 685



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 121/524 (23%), Positives = 200/524 (38%), Gaps = 121/524 (23%)

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
           P  A  LFDE P ++   +N ++  F +  H  ++L LF     K+  S  + + G   +
Sbjct: 54  PRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLF-----KDLHSSGLGVDGLTLS 108

Query: 117 DLAALEY---------GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
              AL+          G+Q+H   L +G   D  +G+SLV++Y K  DF           
Sbjct: 109 --CALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFE---------- 156

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
                                D R +FD     + V W S++SGY  N  + E + L ++
Sbjct: 157 ---------------------DGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQ 195

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M+  GV  +  T A+VL A +    +E G QVH    K G      V +AL+  Y K  M
Sbjct: 196 MQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEM 255

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             DA  +F  + V D++  N MI  Y++ G                              
Sbjct: 256 VGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFY---------------------------- 287

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
              +E   +F  M    +++ +    + +  C+    L   +Q+   V   G +  Q I 
Sbjct: 288 ---LEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR 344

Query: 408 TSLVDFYCKC---------------------------GY-------DALALFNEMRNTGV 433
           T+L+  Y KC                           G+        A+ LF +M   GV
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGV 404

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           +P   T++ +L+      L    Q     +K  Y   P +   + ++D + + G + E+ 
Sbjct: 405 RPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESA 459

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
            +   +P + D+  WS++L G     D     K  E  I+L  E
Sbjct: 460 RVFYSIPAK-DIVAWSAMLTGLAQTRDS---EKAMEVFIQLVKE 499



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 166/426 (38%), Gaps = 93/426 (21%)

Query: 141 VLGSSLVNLYGKC------GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
            LGSSL  L  K       G   S+   +     P  F     +   +   +   A ++F
Sbjct: 2   TLGSSLRTLQNKAKITVGNGRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLF 61

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           D T       +N ++  +  NN D EAL LF  +  +G+  D  TL+  L  C  L    
Sbjct: 62  DETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQV 121

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G+QVH  + K G ++DV V ++L+D Y               +K  D            
Sbjct: 122 VGRQVHCQSLKSGFLEDVSVGTSLVDMY---------------MKTED------------ 154

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
                ED + IF  M  K+++SW S++ G ++NG   E + L   M    +  + F+ A+
Sbjct: 155 ----FEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFAT 210

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------- 417
           V+ A A+ S +E G QV A +   G +    +  +L+  Y K                  
Sbjct: 211 VLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRD 270

Query: 418 ---------GYDALA-------LFNEMRNTGVKPTIITFTAILSACD-----------HC 450
                    GY A+        +F+ MR  GVK +   F   L  C            HC
Sbjct: 271 SVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHC 330

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G+VK G ++   ++            + ++  +++   ++EA  L        +V  W++
Sbjct: 331 GVVKNGYEFAQDIR------------TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTA 378

Query: 511 ILRGCV 516
           ++ G V
Sbjct: 379 MIGGFV 384


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  275 bits (702), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 163/447 (36%), Positives = 225/447 (50%), Gaps = 70/447 (15%)

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           EP  F ++ LI+ Y   G +++AR +FD   D + V W +MIS Y ++N + +AL     
Sbjct: 48  EPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLIL 107

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M R GV  +  T +SVL AC  L  L   +Q+HG   KVG+  DV V SAL+DTYSK   
Sbjct: 108 MLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSALIDTYSK--- 161

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
                                        G   DA ++F  M    L+ WNS+I G +QN
Sbjct: 162 ----------------------------LGEQHDALNVFNEMITGDLVVWNSIIGGFAQN 193

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
               E L L+  M + D   D+ +L SV+ AC  ++ LELG QV   V ++  D D I++
Sbjct: 194 SDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQV--HVHVLKYDQDLILN 251

Query: 408 TSLVDFYCKCG----------------------------------YDALALFNEMRNTGV 433
            +L+D YCKCG                                   DAL LF  M++ G 
Sbjct: 252 NALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGP 311

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           KP  IT   +L AC H GLV +G  +F +MK  + IDP  EHY C++DL  RAG L+EAV
Sbjct: 312 KPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAV 371

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
            LI +M  E D   W  +L  C  H +  L    A+ +++LDP +A  YI LS+I+A S 
Sbjct: 372 KLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQ 431

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +WE  + +R  MR + V K PGCSW +
Sbjct: 432 KWEDVAEVRRKMRTRGVKKDPGCSWIE 458



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 198/443 (44%), Gaps = 73/443 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           + L++ C    ++   + +H H    G    T  I N L+ MY++ G   +A  LFDEMP
Sbjct: 20  SELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLI-NTLINMYVKFGLLDEARNLFDEMP 78

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIH 128
            RN  SW  MI  +       K+L  F ++  +     NM            L   +Q+H
Sbjct: 79  DRNVVSWTTMISAYSNSNLNHKALD-FLILMLREGVRPNMYTYSSVLRACDGLLNLRQLH 137

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
             IL  GL+ D  + S+L++ Y K G+ + A  V N M           I+G        
Sbjct: 138 GSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEM-----------ITG-------- 178

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                         V+WNS+I G+  N++  E L L+ +M+R   + D STL SVL AC+
Sbjct: 179 ------------DLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACT 226

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            L  LE G+QVH H  K     D+I+ +ALLD Y K                        
Sbjct: 227 GLALLELGRQVHVHVLKYD--QDLILNNALLDMYCK------------------------ 260

Query: 309 MITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                  CG +EDA  +F R M  K +ISW++MI GL+QNG   +AL LF  M     + 
Sbjct: 261 -------CGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKP 313

Query: 368 DKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGY--DALAL 424
           +  ++  V+ AC++   +  G   F  +    G+D  +     ++D   + G   +A+ L
Sbjct: 314 NYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKL 373

Query: 425 FNEMRNTGVKPTIITFTAILSAC 447
            +EM +   +P  +T+  +L AC
Sbjct: 374 IHEMNH---EPDAVTWRILLGAC 393



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 32/267 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE- 66
           L  +L++C     + +G+Q+H+H LK    +  L + N LL MY +CG+  DA LLF   
Sbjct: 218 LTSVLRACTGLALLELGRQVHVHVLK---YDQDLILNNALLDMYCKCGSLEDANLLFTRM 274

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--A 120
           M  ++  SW+ MI G  + G    +L+LF  M    P+ N  +   ++   + A L    
Sbjct: 275 MTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDG 334

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
             Y + +  H    G+D        +++L G+ G  + A ++++ M    D     ++ G
Sbjct: 335 WYYFQSMKEHF---GIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLG 391

Query: 181 YANCGKMND-----ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL-LFHKMRRNGVL 234
                K  D     A+ +     D +      ++S   +N++  E +  +  KMR  GV 
Sbjct: 392 ACRVHKNVDLAIYAAKEIL--KLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVK 449

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHG 261
           +D          CS   ++E  KQVH 
Sbjct: 450 KDP--------GCS---WIEVSKQVHA 465


>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
 gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  275 bits (702), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 187/600 (31%), Positives = 287/600 (47%), Gaps = 109/600 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQ+H H +K G  N  L + N++L +Y++C +   A  LFDEM  RN  +WN +I G +
Sbjct: 7   GKQVHSHVIKLGFCN-VLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICGLV 65

Query: 84  KLGHKEKSLQLF-------NVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVN 134
                +    ++        ++  K  F   + ++G  +A  +L  +E G+++H  I+  
Sbjct: 66  DCRGSDYESSVYMGFCYFRKMLLDKVGFD-AITLNGLLRACLELNDVEIGRELHCFIVKL 124

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           G   +S + S+LV+LYGK                               CG + +ARR F
Sbjct: 125 GFAVNSFVNSALVDLYGK-------------------------------CGLVKEARRAF 153

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           D       V+WN M+S Y  N    EA   F  M+    + D  T +S+L++C +LG   
Sbjct: 154 DEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCN 213

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G+Q+HG + K+    DV+VAS L+D Y+K           SE                 
Sbjct: 214 LGRQIHGLSIKLSFDLDVLVASGLVDMYAK-----------SE----------------- 245

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
               I+DA+  F  M  ++++SWN+M+VG  + G   EA+ L   M + DLR D+ +LAS
Sbjct: 246 ---NIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLAS 302

Query: 375 VISACAN-ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALAL--------- 424
           +I +C++ ++S E+  QV A V   G  +   I+ +L++ Y K G  A+AL         
Sbjct: 303 IIRSCSSALTSCEI-MQVNAYVLKNGFHAFLSIANALINAYSKGGSIAMALQCFNTVLEP 361

Query: 425 ------------------------FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                                   F EM   GV P  I F  +LSAC H GLV EG  +F
Sbjct: 362 DLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACSHAGLVNEGLHYF 421

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
             MK  YHI P +EHY+C++DL  RAG L+EA N++  M          + +  C  HGD
Sbjct: 422 SLMK-DYHILPGLEHYTCLIDLLGRAGLLDEAFNILNSMSIGYSSDTLGAFIGACKIHGD 480

Query: 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             L +  AE++ E++P     Y  +SS+FA+ G W   + I  +MR++    +PGCSW +
Sbjct: 481 VKLAKWAAEKLFEMEPNKPVNYTLMSSVFASEGHWHDVARIHKLMRDRCGHGVPGCSWME 540



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/483 (24%), Positives = 201/483 (41%), Gaps = 70/483 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL++C   + + +G++LH   +K G   ++  + + L+ +Y +CG   +A   FDE+
Sbjct: 98  LNGLLRACLELNDVEIGRELHCFIVKLGFAVNSF-VNSALVDLYGKCGLVKEARRAFDEV 156

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             R+   WN M+  +      E++   F +M ++N  +     S    +   L +   G+
Sbjct: 157 YCRDLVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGR 216

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH   +    D D ++ S LV++Y K     S N                         
Sbjct: 217 QIHGLSIKLSFDLDVLVASGLVDMYAK-----SEN------------------------- 246

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++DAR+ FD     + V WN+M+ GY    +  EA+ L   M +  +  D  TLAS++ 
Sbjct: 247 -IDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIR 305

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           +CSS        QV+ +  K G    + +A+AL++ YSK                     
Sbjct: 306 SCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKG-------------------- 345

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                      G I  A   F T+    L++W S+I   + +  P  ++D F  M    +
Sbjct: 346 -----------GSIAMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGV 394

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425
             D+     V+SAC++   +  G   F+ +    +       T L+D   + G    A F
Sbjct: 395 WPDQIVFLEVLSACSHAGLVNEGLHYFSLMKDYHILPGLEHYTCLIDLLGRAGLLDEA-F 453

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVDLFA 484
           N + +  +  +  T  A + AC   G VK   KW  A +  + ++P    +Y+ M  +FA
Sbjct: 454 NILNSMSIGYSSDTLGAFIGACKIHGDVKLA-KW--AAEKLFEMEPNKPVNYTLMSSVFA 510

Query: 485 RAG 487
             G
Sbjct: 511 SEG 513



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 129/302 (42%), Gaps = 68/302 (22%)

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L  GKQ+HSH++  G      L + ++N+Y KC DFN A+                    
Sbjct: 4   LREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAH-------------------- 43

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS-NNEDTEA-----LLLFHKMRRNGVL 234
                      R+FD     + V WN++I G +     D E+        F KM  + V 
Sbjct: 44  -----------RLFDEMHVRNVVTWNTVICGLVDCRGSDYESSVYMGFCYFRKMLLDKVG 92

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            DA TL  +L AC  L  +E G+++H    K+G   +  V SAL+D Y K G+  +A + 
Sbjct: 93  FDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYGKCGLVKEARRA 152

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F E+   D +L N M++ Y+     E+A   F+ M  ++ ++                  
Sbjct: 153 FDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMT------------------ 194

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
                        D F+ +S++++C  + S  LG Q+      +  D D ++++ LVD Y
Sbjct: 195 -------------DGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMY 241

Query: 415 CK 416
            K
Sbjct: 242 AK 243



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 135/325 (41%), Gaps = 72/325 (22%)

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           +GFL  GKQVH H  K+G  + + + + +L+ Y K    + A +LF E+ V         
Sbjct: 1   MGFLREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHV--------- 51

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-NGSPIEALDL--FCNMNKL--- 363
                                 +++++WN++I GL    GS  E+     FC   K+   
Sbjct: 52  ----------------------RNVVTWNTVICGLVDCRGSDYESSVYMGFCYFRKMLLD 89

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            +  D  +L  ++ AC  ++ +E+G ++   +  +G   +  ++++LVD Y KCG     
Sbjct: 90  KVGFDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYGKCGLVKEA 149

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +A   F  M+         TF+++L++C   
Sbjct: 150 RRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSSMLNSCGTL 209

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G    G++    +  +   D ++   S +VD++A++  +++A    + M    +V  W++
Sbjct: 210 GSCNLGRQ-IHGLSIKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMA-ARNVVSWNT 267

Query: 511 ILRGCVAHGDKGLGRKVAERMIELD 535
           ++ G    GD G   K+   M + D
Sbjct: 268 MVVGYGRLGDGGEAMKLLIGMFQED 292


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  275 bits (702), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 168/591 (28%), Positives = 280/591 (47%), Gaps = 99/591 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H   +K G  +S + + N LL+MY   G   +A L+F +MP ++  SWN+++  F+
Sbjct: 263 GRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFV 321

Query: 84  KLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKADLAAL-EYGKQIHSHILVNGLDFDSV 141
             G    +L L  +++      ++    S  A        E G+ +H  ++V+GL ++ +
Sbjct: 322 NDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQI 381

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           +G++LV++YGK                                G+M+++RRV  +     
Sbjct: 382 IGNALVSMYGKI-------------------------------GEMSESRRVLLQMPRRD 410

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVH 260
            V WN++I GY  + +  +AL  F  MR  GV  +  T+ SVLSAC   G  LE GK +H
Sbjct: 411 VVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLH 470

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
            +    G   D  V                                N++IT+Y+ CG + 
Sbjct: 471 AYIVSAGFESDEHVK-------------------------------NSLITMYAKCGDLS 499

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            ++ +F  + N+++I+WN+M+   + +G   E L L   M    + +D+FS +  +SA A
Sbjct: 500 SSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAA 559

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------- 419
            ++ LE G+Q+      +G + D  I  +  D Y KCG                      
Sbjct: 560 KLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNI 619

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +  A F+EM   G+KP  +TF ++L+AC H GLV +G  ++D +   +
Sbjct: 620 LISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDF 679

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
            ++P IEH  C++DL  R+G L EA   I +MP + +  +W S+L  C  HG+   GRK 
Sbjct: 680 GLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKA 739

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           AE + +L+PE+   Y+  S++FAT+G WE    +R  M  K++ K   CSW
Sbjct: 740 AENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSW 790



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 229/528 (43%), Gaps = 106/528 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ ++ SC       +G+Q+    +K G L S L + N L+ M    GN   A  +FD+M
Sbjct: 146 MSLVISSCGLLKDESLGRQIIGQVVKSG-LESKLAVENSLISMLGSMGNVDYANYIFDQM 204

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             R+  SWN++   + + GH E+S ++F++M     + N  + + L+S     D    ++
Sbjct: 205 SERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQ--KW 262

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+ IH   LV  + FDSV+          C      N +L M               YA 
Sbjct: 263 GRGIHG--LVVKMGFDSVV----------C----VCNTLLRM---------------YAG 291

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G+  +A  VF +      + WNS+++ ++++    +AL L   M  +G   +  T  S 
Sbjct: 292 AGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSA 351

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L+AC +  F E G+ +HG     G+  + I+ +AL+  Y K G                 
Sbjct: 352 LAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIG----------------- 394

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                          + +++ +   MP + +++WN++I G +++  P +AL  F  M   
Sbjct: 395 --------------EMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVE 440

Query: 364 DLRMDKFSLASVISACANISS-LELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
            +  +  ++ SV+SAC      LE G+ + A +   G +SD+ +  SL+  Y KC     
Sbjct: 441 GVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSS 500

Query: 418 ----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                       G + L L ++MR+ GV     +F+  LSA   
Sbjct: 501 SQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAK 560

Query: 450 CGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
             +++EGQ+    A+K  +  D  I  ++   D++++ G + E V ++
Sbjct: 561 LAVLEEGQQLHGLAVKLGFEHDSFI--FNAAADMYSKCGEIGEVVKML 606



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 125/552 (22%), Positives = 229/552 (41%), Gaps = 108/552 (19%)

Query: 8   LARLLQSCNTHHSI-HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +A L+ +C    S+   G Q+H    K G+L S + ++  +L +Y   G  + +  +F+E
Sbjct: 44  IASLVTACGRSGSMFREGVQVHGFVAKSGLL-SDVYVSTAILHLYGVYGLVSCSRKVFEE 102

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLIS--GFAKADLAA 120
           MP RN  SW +++ G+   G  E+ + ++  M  +    N+ S +++IS  G  K +   
Sbjct: 103 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDE--- 159

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              G+QI   ++ +GL+    + +SL+++ G  G+ + AN + + M E D    +++ + 
Sbjct: 160 -SLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA 218

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA  G + ++ R+F                                 MRR     +++T+
Sbjct: 219 YAQNGHIEESFRIFSL-------------------------------MRRFHDEVNSTTV 247

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +++LS    +   + G+ +HG   K+G    V V + LL  Y+  G   +A  +F ++  
Sbjct: 248 STLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPT 307

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            D                               LISWNS++     +G  ++AL L C+M
Sbjct: 308 KD-------------------------------LISWNSLMASFVNDGRSLDALGLLCSM 336

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
                 ++  +  S ++AC      E G  +   V + GL  +QII  +LV  Y K G  
Sbjct: 337 ISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEM 396

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                            ALA F  MR  GV    IT  ++LSAC
Sbjct: 397 SESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC 456

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              G + E  K   A       + +    + ++ ++A+ G L+ + +L   +    ++  
Sbjct: 457 LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIIT 515

Query: 508 WSSILRGCVAHG 519
           W+++L     HG
Sbjct: 516 WNAMLAANAHHG 527



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 197/455 (43%), Gaps = 73/455 (16%)

Query: 98  MPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD-F 156
           MP +N+ SWN ++SG  +  L  LE G +    +   G+   S + +SLV   G+ G  F
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLY-LE-GMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMF 58

Query: 157 NSANQVLNMMKEP----DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
               QV   + +     D +  +A++  Y   G ++ +R+VF+   D + V W S++ GY
Sbjct: 59  REGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGY 118

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
               E  E + ++  MR  GV  + ++++ V+S+C  L     G+Q+ G   K G     
Sbjct: 119 SDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSG----- 173

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
                                L S+L V      N++I++  S G ++ A +IF  M  +
Sbjct: 174 ---------------------LESKLAVE-----NSLISMLGSMGNVDYANYIFDQMSER 207

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
             ISWNS+    +QNG   E+  +F  M +    ++  ++++++S   ++   + G  + 
Sbjct: 208 DTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIH 267

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG---------------------------------Y 419
             V  +G DS   +  +L+  Y   G                                  
Sbjct: 268 GLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSL 327

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
           DAL L   M ++G     +TFT+ L+AC      ++G+     +        +I   + +
Sbjct: 328 DALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIG-NAL 386

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           V ++ + G ++E+  ++ QMP   DV  W++++ G
Sbjct: 387 VSMYGKIGEMSESRRVLLQMP-RRDVVAWNALIGG 420


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  275 bits (702), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 163/540 (30%), Positives = 276/540 (51%), Gaps = 71/540 (13%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
           ++M+   +K G+   + ++F+ MP+K+   WN +I G+ +  L       Q+   ++  G
Sbjct: 184 SSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGL--FWESIQMFLEMIGGG 241

Query: 136 LDFDSVLGSSLVNLYGKCG----DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
           L    V  ++L+   G+ G       + + VL +    D F L++L+  Y+N G    A 
Sbjct: 242 LRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAA 301

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
            VFD     S + WN+MISGY+ N    E+  LF ++ ++G   D+ TL S++  CS   
Sbjct: 302 LVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTS 361

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
            LE+G+ +H    +  +   +++++A++D YSK                           
Sbjct: 362 DLENGRILHSCIIRKELESHLVLSTAIVDMYSK--------------------------- 394

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
               CG I+ A  +F  M  K++I+W +M+VGLSQNG   +AL LFC M +  +  +  +
Sbjct: 395 ----CGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVT 450

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------- 418
           L S++  CA++ SL  G  V A     G   D +I+++L+D Y KCG             
Sbjct: 451 LVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEF 510

Query: 419 ---------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                  AL +++ M    +KP   TF ++L+AC H GLV+EG+
Sbjct: 511 HLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGK 570

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
             F +M+  + + P+ +HY+C+VDL +RAG L EA  L++QMPF+    +  ++L GC  
Sbjct: 571 ALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRT 630

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           H +  +G ++A+R+I LD  N+  Y+ LS+I+A + +WE  + IR +MR + + K+PG S
Sbjct: 631 HKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYS 690



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 149/588 (25%), Positives = 235/588 (39%), Gaps = 107/588 (18%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           IHV K +H   +K  +   +  +A +L+++Y   G    A  +FD+         NAMI 
Sbjct: 61  IHV-KSIHAQIIKNWVSTESF-LAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIA 118

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KA--DLAALEYGKQIHSHILVNGLD 137
           GF++     +  +LF +M    D   N     FA KA  DL   E G +I    +  G  
Sbjct: 119 GFLRNQQHMEVPRLFRMMGS-CDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFH 177

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
               +GSS+VN   K G    A +V + M E D  C                        
Sbjct: 178 LHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVC------------------------ 213

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                  WNS+I GY+      E++ +F +M   G+     T+A++L AC   G  + G 
Sbjct: 214 -------WNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGM 266

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
             H +   +G+ +DV V ++L+D YS  G    A  +F  +     I  N MI+ Y   G
Sbjct: 267 CAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNG 326

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            I ++  +FR                L Q+GS                  D  +L S+I 
Sbjct: 327 MIPESYALFRR---------------LVQSGSGF----------------DSGTLVSLIR 355

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------ 419
            C+  S LE G  + + +    L+S  ++ST++VD Y KCG                   
Sbjct: 356 GCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVIT 415

Query: 420 ---------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAM 463
                          DAL LF +M+   V    +T  +++  C H G + +G+      +
Sbjct: 416 WTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFI 475

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
           +  Y  D  I   S ++D++A+ G ++ A  L        DV + +S++ G   HG    
Sbjct: 476 RHGYAFDAVIT--SALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRY 533

Query: 524 GRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
              V  RMIE  L P N   ++ L +  + SG  E+   +   M   H
Sbjct: 534 ALGVYSRMIEERLKP-NQTTFVSLLTACSHSGLVEEGKALFHSMERDH 580



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 143/294 (48%), Gaps = 34/294 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L++ C+    +  G+ LH   ++K  L S L ++  ++ MY +CG    A ++F  M
Sbjct: 350 LVSLIRGCSQTSDLENGRILHSCIIRKE-LESHLVLSTAIVDMYSKCGAIKQATIVFGRM 408

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
            ++N  +W AM+ G  + G+ E +L+LF  M ++   + ++ +       A L +L  G+
Sbjct: 409 GKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGR 468

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H+H + +G  FD+V+ S+L+++Y KCG  +SA ++ N     ++F L  +I       
Sbjct: 469 TVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFN-----NEFHLKDVI------- 516

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                             + NSMI GY  +     AL ++ +M    +  + +T  S+L+
Sbjct: 517 ------------------LCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLT 558

Query: 246 ACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           ACS  G +E GK + H       V       + L+D +S+ G   +A +L  ++
Sbjct: 559 ACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQM 612


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 190/682 (27%), Positives = 319/682 (46%), Gaps = 143/682 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +  +   ++ G  +H    K+G L+  + + + L+ MY +C     A  +F+ +
Sbjct: 312 LGSVLSAIASLSMLNYGSMVHAQATKEG-LDDNVYVGSALVNMYAKCSKMDAAKQVFNSL 370

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             RN   WNAM+ GF + G  ++ ++ F+ M    PQ ++F++  + S  A A L  L +
Sbjct: 371 GERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFS--ACASLHYLNF 428

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+H+ ++ N   F S L                             F  +AL+  YA 
Sbjct: 429 GGQLHTVMIKN--KFASNL-----------------------------FVANALVDMYAK 457

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G + +AR+ F+      +V WN++I GY+    + EA  +F +M  NGVL D  +LAS+
Sbjct: 458 SGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASI 517

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----------MPS--- 289
           +SAC+++  L+ G+Q H    KVG+       S+L+D Y K G           MPS   
Sbjct: 518 VSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNV 577

Query: 290 ----------------DACKLFSELKVYD-----------------TILLN--------- 307
                           +A  LF E+++                     +LN         
Sbjct: 578 VSVNALIAGYTMGHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQV 637

Query: 308 --------------TMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIE 352
                         +++ +Y +  R  D++ +F  +   K L+ W ++I G +Q     +
Sbjct: 638 MKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEK 697

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL  + +M   ++  D+ + ASV+ ACA +SSL+ G+++ + +   G + D++  +SL+D
Sbjct: 698 ALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLID 757

Query: 413 FYCKCG----------------------------------YDALALFNEMRNTGVKPTII 438
            Y KCG                                   +AL +F +M    + P  +
Sbjct: 758 MYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEV 817

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TF  +LSAC H G V EG+K FD M   Y + P ++H  CMVD+  R G LNEA   I +
Sbjct: 818 TFLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINK 877

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           +  +AD  +WS++L  C  HGD+  G++ A++++EL P+++ +Y+ LSSI+A S  W  +
Sbjct: 878 LGCKADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGA 937

Query: 559 SLIRDIMREKHVGKLPGCSWAD 580
             +R  M+ K V KLPG SW +
Sbjct: 938 VSLRREMKLKGVKKLPGYSWIE 959



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 154/619 (24%), Positives = 253/619 (40%), Gaps = 167/619 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C+    ++ G+Q+H    K G    +      L+ MY +C    DA L+FD  
Sbjct: 145 FAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSF-CQGGLIDMYAKCRYLRDARLVFDGA 203

Query: 68  PRRNCFSWNAMIEGFMK-----------------------------------LGHKEKSL 92
              +  SW A+I G+++                                   LG    + 
Sbjct: 204 LNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADAR 263

Query: 93  QLFNVMPQKNDFSWNMLISGFAK---------------------------------ADLA 119
           +LF  +P  N  +WN++ISG AK                                 A L+
Sbjct: 264 KLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLS 323

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L YG  +H+     GLD +  +GS+LVN+Y                             
Sbjct: 324 MLNYGSMVHAQATKEGLDDNVYVGSALVNMY----------------------------- 354

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
             A C KM+ A++VF+   + + V+WN+M+ G+  N    E +  F  M+R+G   D  T
Sbjct: 355 --AKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFT 412

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             S+ SAC+SL +L  G Q+H    K     ++ VA+AL+D Y+K G   +A K F  +K
Sbjct: 413 FTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMK 472

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           ++D +                               SWN++IVG  Q     EA  +F  
Sbjct: 473 IHDNV-------------------------------SWNAIIVGYVQEEYNDEAFFMFRR 501

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M    +  D+ SLAS++SACAN+  L+ G+Q    +  +GLD+     +SL+D Y KCG 
Sbjct: 502 MVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGV 561

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A+ LF E++  G+KPT +TF  +L  C
Sbjct: 562 VLAARDVFYSMPSRNVVSVNALIAGYTMGHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGC 621

Query: 448 DHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           D   ++  G++     MKW +    E+   S +  L+  +    ++  L  ++ +   + 
Sbjct: 622 DGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLC-LYMNSQRFVDSETLFSELQYPKGLV 680

Query: 507 MWSSILRGCVA--HGDKGL 523
           +W++++ G     H +K L
Sbjct: 681 VWTALISGYAQQNHHEKAL 699



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 146/598 (24%), Positives = 267/598 (44%), Gaps = 113/598 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ+ +T   IH  K L +    KG+L       N ++ +Y++CGN   A   F  + ++
Sbjct: 53  VLQALSTAKVIH-SKSLKIGVGLKGLL------GNVIVDLYVKCGNVDFAQKAFSRLEKK 105

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           + F+WN+++  ++  G     +Q F  M     + N+F++ M++S  A + L  + +G+Q
Sbjct: 106 DVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLS--ACSGLQDVNFGRQ 163

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKC-----------GDFN------------------ 157
           +H  +   G  F S     L+++Y KC           G  N                  
Sbjct: 164 VHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGF 223

Query: 158 --SANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
              A +V + M+     PD   L  +++ Y   G++ DAR++F +  + + V WN MISG
Sbjct: 224 PMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISG 283

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           +       EA+  F ++++ G+    S+L SVLSA +SL  L +G  VH  A K G+ D+
Sbjct: 284 HAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDN 343

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
           V V SAL++ Y+K                               C +++ AK +F ++  
Sbjct: 344 VYVGSALVNMYAK-------------------------------CSKMDAAKQVFNSLGE 372

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           ++++ WN+M+ G +QNG   E ++ F  M +   + D+F+  S+ SACA++  L  G Q+
Sbjct: 373 RNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQL 432

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCGY-------------------------------- 419
              +      S+  ++ +LVD Y K G                                 
Sbjct: 433 HTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYN 492

Query: 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
            +A  +F  M + GV P  ++  +I+SAC +   +K GQ+    +  +  +D      S 
Sbjct: 493 DEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQC-HCLLVKVGLDTSTCAGSS 551

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
           ++D++ + G +  A ++   MP    V + + I    + H ++ +      +M+ L P
Sbjct: 552 LIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTMGHLEEAIHLFQEIQMVGLKP 609



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 207/470 (44%), Gaps = 101/470 (21%)

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           K  L AL   K IHS  L  G+    +LG+ +V+LY KCG+ + A +  + +++ D F  
Sbjct: 51  KPVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAW 110

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           ++++S Y + G       +F     +   MWN                   H++R N   
Sbjct: 111 NSVLSMYLDHG-------LFATVVQSFVCMWN-------------------HEVRPNEF- 143

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHA----------CKVGVID-------------- 270
               T A VLSACS L  +  G+QVH             C+ G+ID              
Sbjct: 144 ----TFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLV 199

Query: 271 -------DVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRI 319
                  D +  +AL+  Y + G P +A K+F  ++      D I L T++  Y + GR+
Sbjct: 200 FDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRL 259

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
            DA+ +F  +PN ++++WN MI G ++ G   EA+  F  + K  L+  + SL SV+SA 
Sbjct: 260 ADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAI 319

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------------------- 417
           A++S L  G  V A+ T  GLD +  + ++LV+ Y KC                      
Sbjct: 320 ASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWN 379

Query: 418 -----------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        + +  F+ M+  G +P   TFT+I SAC     +  G +    M  +
Sbjct: 380 AMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVM-IK 438

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
                 +   + +VD++A++G L EA    E M    +V  W++I+ G V
Sbjct: 439 NKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVS-WNAIIVGYV 487


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 171/606 (28%), Positives = 294/606 (48%), Gaps = 99/606 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L++C    +I  G+ LH  + +K  L S++ + + LL MYMR G    +  +F EM
Sbjct: 99  LSVALKACGQSSNIAYGESLHA-YAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEM 157

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS---WNMLISGFAKADLAALEYG 124
           P RN  +W A I G +  G   + L+ F+ M +    S   +   I+  A ADL  ++YG
Sbjct: 158 PFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYG 217

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           ++IH+H++V G      + +SL  +Y +CG+     ++   M E D    ++LI+ Y   
Sbjct: 218 REIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRI 277

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G                               ++ +A+  F  MR + V  +  T AS  
Sbjct: 278 G-------------------------------QEEKAVNTFLLMRNSQVSPNEQTFASTF 306

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           +AC+SL  L  G+Q+HG+   +G+ D + V+++++  Y                      
Sbjct: 307 AACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMY---------------------- 344

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                    S+C +++ A  +F+ M  + +ISW+++I G SQ     E    F  M +  
Sbjct: 345 ---------STCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAG 395

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
            +   F+LAS++S    ++ LE G QV A    +GL+ +  I ++L++ Y KCG      
Sbjct: 396 PQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEAS 455

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +A+ LF +      +P  +TF ++L+AC H G
Sbjct: 456 KVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSG 515

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            +  G ++F+ M+  Y++ P  EHY CMVDL  RAG LN+A  +I +MP++ D  +W+++
Sbjct: 516 QLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTL 575

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           LR C   GD   GR+ A+R++ELDP +    + L++I +++G W++++ +R  M+ K V 
Sbjct: 576 LRACKEKGDVERGRRAAQRILELDPTSFTTLVTLANIHSSTGNWKEAANVRKDMKSKGVI 635

Query: 572 KLPGCS 577
           K PG S
Sbjct: 636 KEPGWS 641



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 117/511 (22%), Positives = 211/511 (41%), Gaps = 104/511 (20%)

Query: 48  LQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----ND 103
           LQ  +  G    A  +FD+MPRR+  SW A+++G++     E++L LF+ M       + 
Sbjct: 35  LQDLIDSGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSG 94

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
            ++ + ++  A    + + YG+ +H++     L     +GS+L+++Y +           
Sbjct: 95  DTYVLSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMR----------- 143

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
                                GK++ + RVF      +SV W + I+G +      E L 
Sbjct: 144 --------------------IGKIDKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLR 183

Query: 224 LFHKMRRNGVL-EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
            F +M R   L  D    A  L AC+ L  +++G+++H H    G    + VA++L   Y
Sbjct: 184 YFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTHVIVKGFAAILWVANSLATMY 243

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
           ++ G   D  +LF  +   D +L  ++IT Y   G+ E A + F  M N  +        
Sbjct: 244 TECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQV-------- 295

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
                 SP E                  + AS  +ACA++S L  GEQ+   V  +GL  
Sbjct: 296 ------SPNEQ-----------------TFASTFAACASLSRLVWGEQLHGNVFSLGLGD 332

Query: 403 DQIISTSLVDFYCKC--------------------------GYDALAL-------FNEMR 429
              +S S++  Y  C                          GY   A        F+ MR
Sbjct: 333 SLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMR 392

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGC 488
             G +PT     ++LS      ++++G++    A+      +P I   S +++++++ G 
Sbjct: 393 QAGPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIR--SALINMYSKCGS 450

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           + EA  + E+     D+   ++++ G   HG
Sbjct: 451 IIEASKVFEEKD-RTDIVSLTAMINGYAEHG 480



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 162/378 (42%), Gaps = 77/378 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A    +C +   +  G+QLH +    G L  +L ++N +++MY  C     A +LF  M
Sbjct: 302 FASTFAACASLSRLVWGEQLHGNVFSLG-LGDSLSVSNSMMKMYSTCAKLDSASVLFQGM 360

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             R+  SW+ +I G+ +    E+  + F+ M    PQ  DF+   L+S      +A LE 
Sbjct: 361 RCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLS--VSGIMAVLEQ 418

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+H+  L  GL+ +  + S+L+N+Y KCG    A++V       D   L+A+I+GYA 
Sbjct: 419 GRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAE 478

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            GK                                 EA+ LF K  +     D  T  SV
Sbjct: 479 HGKCE-------------------------------EAIDLFEKSLKLSFRPDDVTFISV 507

Query: 244 LSACSSLGFLEHG----------------KQVHG----HACKVGVIDDV----------- 272
           L+ACS  G L+ G                K+ +G      C+ G ++D            
Sbjct: 508 LTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKK 567

Query: 273 --IVASALLDTYSKRG---MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
             +V + LL    ++G       A +   EL       L T+  ++SS G  ++A ++ +
Sbjct: 568 DDVVWTTLLRACKEKGDVERGRRAAQRILELDPTSFTTLVTLANIHSSTGNWKEAANVRK 627

Query: 328 TMPNKSLIS---WNSMIV 342
            M +K +I    W+S+++
Sbjct: 628 DMKSKGVIKEPGWSSILI 645


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 167/610 (27%), Positives = 290/610 (47%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +   +  GKQLH + LK G ++        LL +Y++CG+   A  +F+  
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAG-MSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
            R N   WN M+  + ++    KS ++F  M       N F++  ++          +E 
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCT--GQIEL 364

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIHS  + NG + D  +   L+++Y K G  + A ++L M+++ D             
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRD------------- 411

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                              V W SMI+GY+ ++   EAL  F +M+  GV  D   LAS 
Sbjct: 412 ------------------VVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASA 453

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
            SAC+ +  +  G Q+H      G   D+ + + L++ Y++ G   +A  LF E++    
Sbjct: 454 ASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIE---- 509

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                                      +K  I+WN +I G  Q+    +AL +F  M + 
Sbjct: 510 ---------------------------HKDEITWNGLISGFGQSRLYKQALMVFMKMGQA 542

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
             + + F+  S ISA AN++ ++ G+QV  R    G  S+  ++ +L+  Y KC      
Sbjct: 543 GAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDA 602

Query: 418 ---------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      G +AL LF++M+  G+KP  +TF  +L+AC H 
Sbjct: 603 KMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHV 662

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG  +F +M   Y ++P  +HY+C+VD+  RAG L+ A   +++MP  A+  +W +
Sbjct: 663 GLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRT 722

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +G   A+ ++EL+P ++ +Y+ LS+ +A +G+W     +R +M+++ +
Sbjct: 723 LLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGI 782

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 783 RKEPGRSWIE 792



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 229/528 (43%), Gaps = 108/528 (20%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           ++H   + +G+    L I N L+ +Y + G    A  +F E+  R+  SW AM+ G+ + 
Sbjct: 64  EIHATSVVRGLGADRL-IGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122

Query: 86  GHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
           G  +++ +L++      V+P    +  + ++S   K  L A   G+ IH+ +       +
Sbjct: 123 GLGKEAFRLYSQMHWTAVIP--TPYVLSSVLSACTKGKLFA--QGRMIHAQVYKQAFCSE 178

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
           + +G++L+ LY   G F  A +V   M     FC                     DR T 
Sbjct: 179 TFVGNALIALYLGFGSFKLAERVFCDML----FC---------------------DRVT- 212

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
                +N++ISG+        AL +F +M+ +G+  D  T+AS+L+AC+S+G L+ GKQ+
Sbjct: 213 -----FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H +  K G+  D I   +LLD Y K                               CG I
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVK-------------------------------CGDI 296

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           E A  IF      +++ WN M+V   Q     ++ ++F  M    +  ++F+   ++  C
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTC 356

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK----------------------- 416
                +ELGEQ+ +     G +SD  +S  L+D Y K                       
Sbjct: 357 TCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWT 416

Query: 417 ---CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
               GY       +ALA F EM++ GV P  I   +  SAC     +++G +   A  + 
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYV 475

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
                +I  ++ +V+L+AR G   EA +L  ++  + ++  W+ ++ G
Sbjct: 476 SGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEI-TWNGLISG 522


>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
          Length = 807

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 183/647 (28%), Positives = 311/647 (48%), Gaps = 119/647 (18%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FD +P RN 
Sbjct: 157 KACGALQWSRFGRGVHGYVAKAG-LHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNA 215

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++L + M ++      + +S    A A++  +E GKQ H+ 
Sbjct: 216 VAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAI 275

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNGL+ D++LG+S++N Y K G    A  + + M E D    + LISGY   G +   
Sbjct: 276 AIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVE-- 333

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                        EA+ +   MRR  +  D  TL++++SA +S 
Sbjct: 334 -----------------------------EAIYMCQLMRRENLKFDCVTLSTLMSAATST 364

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK++  +  + G+  D+++AS  +D Y+K G   +A K+F      D IL NT++
Sbjct: 365 QNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLL 424

Query: 311 TVYSSC-----------------------------------GRIEDAKHIFRTM------ 329
           + Y+                                     G++ +AK +F  M      
Sbjct: 425 SAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIF 484

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  LISW +M+ GL QNG   EA+     M +  LR + F++   +SAC N++SL  G 
Sbjct: 485 PN--LISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACVNLASLHFGR 542

Query: 390 QVFARVTIIGLDSDQI-----ISTSLVDFYCKCG-------------------------- 418
            +   +    + + Q      I TSLVD Y KCG                          
Sbjct: 543 SIHGYI----IRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISA 598

Query: 419 -------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                   +A+ L+  + + GVKP  IT T++LSAC++   V +  + F  M  ++ + P
Sbjct: 599 YALYGKVREAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIEVFRDMVSKHGMKP 658

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            +EHY  MVDL A AG  ++A+ L+E+MP++ D  M  S+   C       L   +++ +
Sbjct: 659 CLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHL 718

Query: 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +E +P+N+  Y+ +S+ +A  G W++ + +R++M+ K + K PGCSW
Sbjct: 719 LESEPDNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSW 765



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 133/517 (25%), Positives = 240/517 (46%), Gaps = 71/517 (13%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LKKG        I  +L+  Y +C     A +LF ++
Sbjct: 50  GEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKL 109

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             RN FSW A+I    ++G  E +L  F  M +   F  N ++    KA   L    +G+
Sbjct: 110 RVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 169

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H ++   GL     + SSL ++YGKCG  + A +V + + + +    +AL+ G     
Sbjct: 170 GVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVG----- 224

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                                     Y+ N    EA+ L  +MR+ G+     T+++ LS
Sbjct: 225 --------------------------YVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLS 258

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A +++G +E GKQ H  A   G+  D I+ +++L+ Y K G+                  
Sbjct: 259 ASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGL------------------ 300

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                        IE A+ IF  M  K +++WN +I G  Q G   EA+ +   M + +L
Sbjct: 301 -------------IEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENL 347

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425
           + D  +L++++SA  +  +L+LG+++       GL+SD +++++ VD Y KCG  ++   
Sbjct: 348 KFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCG--SIVNA 405

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            ++ ++ V+  +I +  +LSA    GL  E  + F  M+ +  + P +  ++ ++    R
Sbjct: 406 KKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLE-SVPPNVITWNLIILSLLR 464

Query: 486 AGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHG 519
            G +NEA  +  QM       ++  W++++ G V +G
Sbjct: 465 NGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNG 501



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 194/458 (42%), Gaps = 106/458 (23%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH+ IL                   K GDF + N+ +           + L+  YA 
Sbjct: 65  GQQIHAQIL-------------------KKGDFYARNEYIE----------TKLVIFYAK 95

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C  +  A+ +F +    +   W ++I           AL+ F +M  NG+  D   + +V
Sbjct: 96  CDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNV 155

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
             AC +L +   G+ VHG+  K G+   V VAS+L D Y K G+  DA K+F        
Sbjct: 156 CKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFD------- 208

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                                    +P+++ ++WN+++VG  QNG   EA+ L   M K 
Sbjct: 209 ------------------------YIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKE 244

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA 423
            +   + ++++ +SA AN+  +E G+Q  A   + GL+ D I+ TS+++FYCK G   L 
Sbjct: 245 GIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVG---LI 301

Query: 424 LFNEMRNTG-VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ---------------- 466
            + EM   G ++  ++T+  ++S     GLV+E       M+ +                
Sbjct: 302 EYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAA 361

Query: 467 -----YHIDPEIEHY-------------SCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
                  +  EI+ Y             S  VD++A+ G +  A  + +    + D+ +W
Sbjct: 362 TSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDS-TVQKDLILW 420

Query: 509 SSILRGCVAHGDKGLG----RKVAERMIELDPENACAY 542
           +++L    A+ D GL     R   E  +E  P N   +
Sbjct: 421 NTLLS---AYADSGLSGEALRLFYEMQLESVPPNVITW 455



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 129/349 (36%), Gaps = 74/349 (21%)

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           +S    N E  EAL L  +M    +         +L  C     L  G+Q+H    K G 
Sbjct: 18  VSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKG- 76

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
                      D Y++                 +  +   ++  Y+ C  +E A+ +F  
Sbjct: 77  -----------DFYAR-----------------NEYIETKLVIFYAKCDALEIAQVLFSK 108

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           +  +++ SW ++I    + G    AL  F  M +  +  D F + +V  AC  +     G
Sbjct: 109 LRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFG 168

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------------------- 419
             V   V   GL     +++SL D Y KCG                              
Sbjct: 169 RGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQN 228

Query: 420 ----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK-----WFDAMKWQYHID 470
               +A+ L +EMR  G++PT +T +  LSA  + G ++EG++       + ++    + 
Sbjct: 229 GMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILG 288

Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             I ++ C V L        E   +I     E DV  W+ ++ G V  G
Sbjct: 289 TSILNFYCKVGLI-------EYAEMIFDGMIEKDVVTWNLLISGYVQQG 330



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 45/223 (20%)

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           S+   +  L +NG   EAL L   M+  ++R+       ++  C     L  G+Q+ A++
Sbjct: 13  SYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQI 72

Query: 396 TIIG--LDSDQIISTSLVDFYCKC---------------------------------GYD 420
              G     ++ I T LV FY KC                                 G  
Sbjct: 73  LKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEG 132

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH----Y 476
           AL  F EM   G+ P       + + C  CG ++  +  F      Y     + H     
Sbjct: 133 ALMGFVEMLENGIFPDNFV---VPNVCKACGALQWSR--FGRGVHGYVAKAGLHHCVFVA 187

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           S + D++ + G L++A  + + +P    V  W++++ G V +G
Sbjct: 188 SSLADMYGKCGVLDDARKVFDYIPDRNAVA-WNALMVGYVQNG 229



 Score = 42.7 bits (99), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    + +  I   L+ MY +CG+   A  +F       
Sbjct: 529 LSACVNLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSE 588

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHI 131
              +NAMI  +   G   +++ L+  +        N+ I+      L+A  YG+ ++  I
Sbjct: 589 LPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSL----LSACNYGRDVNQAI 644

Query: 132 LV 133
            V
Sbjct: 645 EV 646


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 165/521 (31%), Positives = 258/521 (49%), Gaps = 73/521 (14%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
           +FN +P    F+ N +I G+   +L         +  +++ GLD D     +  +L+  C
Sbjct: 96  VFNQIPNPTTFTCNSIIRGYTNKNLP--RQAILFYQLMMLQGLDPDRF---TFPSLFKSC 150

Query: 154 GDFNSANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
           G      Q+      +    D +  + L++ Y+NCG +  AR+VFD+  + S V W +MI
Sbjct: 151 GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 210

Query: 210 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
             Y   +   EA+ LF +M    V  +  TL +VL+AC+    LE  KQVH +  + G+ 
Sbjct: 211 GAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIG 270

Query: 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
              ++ SAL+D                               VY  CG    A+ +F  M
Sbjct: 271 FHTVLTSALMD-------------------------------VYCKCGCYPLARDLFNKM 299

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           P K+L  WN MI G  ++    EAL LF  M    ++ DK ++AS++ AC ++ +LELG+
Sbjct: 300 PEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGK 359

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------------- 418
            +   +    ++ D  + T+LVD Y KCG                               
Sbjct: 360 WLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCG 419

Query: 419 --YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
               AL LF+EM+ + VKP  ITF  +L+AC H GLV EG  +F++M  +Y I P IEHY
Sbjct: 420 QGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHY 479

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
            CMVD+  RAG + EA +LI+ MP   D  +   +L  C  HG+  +  + A+++IELDP
Sbjct: 480 GCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDP 539

Query: 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +N   Y+ LS+I+++   WE +  +R++M E+++ K PGCS
Sbjct: 540 KNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCS 580



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 118/251 (47%), Gaps = 34/251 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C     +   KQ+H +  + GI   T+ + + L+ +Y +CG    A  LF++M
Sbjct: 241 LVNVLTACARSRDLETAKQVHKYIDETGIGFHTV-LTSALMDVYCKCGCYPLARDLFNKM 299

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGK 125
           P +N F WN MI G ++    E++L LFN M         + ++    A   L ALE GK
Sbjct: 300 PEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGK 359

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H +I    ++ D  LG++LV++Y KCG   SA +V   M E D    +ALI G A CG
Sbjct: 360 WLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCG 419

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                                          +  +AL LFH+M+ + V  DA T   VL+
Sbjct: 420 -------------------------------QGLKALELFHEMQMSEVKPDAITFVGVLA 448

Query: 246 ACSSLGFLEHG 256
           ACS  G +  G
Sbjct: 449 ACSHAGLVNEG 459



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 44/240 (18%)

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G +  A+ +F  +PN +  + NS+I G +    P +A+  +  M    L  D+F+  S+ 
Sbjct: 88  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 147

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
            +C  +     G+Q+    T +G  SD  I  +L++ Y  CG                  
Sbjct: 148 KSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 204

Query: 419 ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHC---GLVKEGQKWF 460
                          ++A+ LF  M    VKP  IT   +L+AC         K+  K+ 
Sbjct: 205 SWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYI 264

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
           D     +H        S ++D++ + GC   A +L  +MP E ++  W+ ++ G V   D
Sbjct: 265 DETGIGFH----TVLTSALMDVYCKCGCYPLARDLFNKMP-EKNLFCWNIMINGHVEDSD 319


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 245/453 (54%), Gaps = 64/453 (14%)

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           Q+L M  + D    + LI+ Y+ CG ++ AR+VFD     S V WN+MI     N E+ E
Sbjct: 89  QILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENE 148

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL L  +M+R G      T++SVL AC++   L   + +H  A K  +  +V VA+ALLD
Sbjct: 149 ALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLD 208

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K                               CG ++DA  +F +MP++S+++W+SM
Sbjct: 209 VYAK-------------------------------CGLMKDAVCVFESMPDRSVVTWSSM 237

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
             G  QN    +AL LF    +  L+ D+F ++SVI ACA ++++  G+QV A ++  G 
Sbjct: 238 AAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGF 297

Query: 401 DSDQIISTSLVDFYCKCG---------------------------------YDALALFNE 427
            S+  +++SL+D Y KCG                                  + + LF +
Sbjct: 298 CSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEK 357

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M+  G+ P  +TF ++LSAC H GLVK+GQK+FD M  ++H+ P + HYSCMVD  +RAG
Sbjct: 358 MQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAG 417

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
            + EA +LI ++PF A   MW S+L  C  HG+  L    A+++ +++P N+  Y+ LS+
Sbjct: 418 QIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSN 477

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++A +G+W++ + +R +++E  V K  G SW +
Sbjct: 478 MYAANGKWDEVAKMRKLLKESDVKKERGKSWIE 510



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 181/396 (45%), Gaps = 65/396 (16%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + ++  +L+ C     +  GK  H   L  G L + L  +N L+ MY +CG+   A  
Sbjct: 62  THVSFVHEILKLCAKRKLLLQGKACHAQILLMG-LKTDLLTSNILINMYSKCGSVDFARQ 120

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAA 120
           +FDEMP R+  SWN MI    + G + ++L L   M ++        IS    A A   A
Sbjct: 121 VFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCA 180

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L   + +H+  +   +D +  + ++L+++Y KC                           
Sbjct: 181 LSECQLLHAFAIKAAMDLNVFVATALLDVYAKC--------------------------- 213

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
               G M DA  VF+   D S V W+SM +GY+ N    +AL LF K    G+  D   +
Sbjct: 214 ----GLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLM 269

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SV+ AC+ L  +  GKQV+    K G   ++ VAS+L+D Y+K G   ++ K+F +++ 
Sbjct: 270 SSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEK 329

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + +L                               WN+MI GLS++   +E + LF  M
Sbjct: 330 RNVVL-------------------------------WNAMISGLSRHARSLEVMILFEKM 358

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
            ++ L  +  +  SV+SAC ++  ++ G++ F  +T
Sbjct: 359 QQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMT 394


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/605 (27%), Positives = 293/605 (48%), Gaps = 98/605 (16%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L+ M++RCG    A  LF ++ R   F  N+M+ G+ KL   + +++ F  M +++
Sbjct: 175 VETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERD 234

Query: 103 DFSWNMLISGFAK---------------------------------ADLAALEYGKQIHS 129
             SWNM+I+  ++                                 A L +L +GKQ+H+
Sbjct: 235 VVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHA 294

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            ++ +    D  + S+L+ LY KCG F  A +V N ++                      
Sbjct: 295 KVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ---------------------- 332

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
                    D +SV W  +I G +     ++++ LF++MR   +  D   LA+++S C +
Sbjct: 333 ---------DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN 383

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
              L  G+Q+H    K G    ++V+++L+  Y+K G   +A  +FS +   D +   +M
Sbjct: 384 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMD 368
           IT YS  G I  A+  F  M  ++ I+WN+M+    Q+G+  + L ++  M ++ D+  D
Sbjct: 444 ITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------- 419
             +  ++   CA+I + +LG+Q+       GL  +  ++ + +  Y KCG          
Sbjct: 504 WVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFD 563

Query: 420 ------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                    A   F++M + G KP  I++ A+LS C H GLV+E
Sbjct: 564 LLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQE 623

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G+ +FD M   + I P +EH+SCMVDL  RAG L EA +LI++MP +    +W ++L  C
Sbjct: 624 GKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSAC 683

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             HG+  L    A+ + ELD  ++ +Y+ L+ I++ +G+ + S+ +R +MR+K + K PG
Sbjct: 684 KIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPG 743

Query: 576 CSWAD 580
            SW +
Sbjct: 744 YSWME 748



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 146/561 (26%), Positives = 262/561 (46%), Gaps = 82/561 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL-LLFDE 66
           LA  L+SC +  ++   + LH   +  G L S + + N LL  Y  CG  +DA  LL  +
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVG-LASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYG 124
           +   N  + N M+ G+ K G    + +LF+ MP+++  SWN L+SG+ +A   L  LE  
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 125 KQIH--SHILVNGLDF------------------------------DSVLGSSLVNLYGK 152
             +H     L N   F                              D  + ++LV+++ +
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVR 185

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
           CG  + A+++ + ++ P  FC +++++GYA    ++ A   F+   +   V WN MI+  
Sbjct: 186 CGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAAL 245

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
             +    EAL L  +M R GV  D++T  S L+AC+ L  L  GKQ+H    +     D 
Sbjct: 246 SQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP 305

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            VASAL++ Y+K                               CG  ++AK +F ++ ++
Sbjct: 306 YVASALIELYAK-------------------------------CGSFKEAKRVFNSLQDR 334

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
           + +SW  +I G  Q     ++++LF  M    + +D+F+LA++IS C N   L LG Q+ 
Sbjct: 335 NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLH 394

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
           +     G +   ++S SL+  Y KCG   +A  +F+ M     +  I+++T++++A    
Sbjct: 395 SLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS----ERDIVSWTSMITAYSQI 450

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG---- 506
           G + + +++FD M  +  I      ++ M+  + + G   + + +   M  + DV     
Sbjct: 451 GNIIKAREFFDGMDTRNAIT-----WNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWV 505

Query: 507 MWSSILRGCVAHGDKGLGRKV 527
            + ++ RGC   G   LG ++
Sbjct: 506 TYVTLFRGCADIGANKLGDQI 526



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 212/460 (46%), Gaps = 48/460 (10%)

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM-MKEPDDFCLSAL 177
            AL   + +H  ++  GL     L ++L++ Y  CG  + A ++L   +KEP+    + +
Sbjct: 18  GALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIM 77

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLED 236
           ++GYA  G ++DA  +FDR        WN+++SGY       + L  F  M R+G  L +
Sbjct: 78  MNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPN 137

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           A T   V+ +C +LG  E   Q+ G   K     D  V +AL+D + + G    A +LFS
Sbjct: 138 AFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFS 197

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           +++       N+M+  Y+    I+ A   F  M  + ++SWN MI  LSQ+G   EAL L
Sbjct: 198 QIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGL 257

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
              M++  +R+D  +  S ++ACA + SL  G+Q+ A+V       D  ++++L++ Y K
Sbjct: 258 VVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAK 317

Query: 417 CG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
           CG   +A  +FN +++                              +++ W   I   ++
Sbjct: 318 CGSFKEAKRVFNSLQDR-----------------------------NSVSWTVLIGGSLQ 348

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           +            C +++V L  QM  E    D    ++++ GC    D  LGR++    
Sbjct: 349 YE-----------CFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLC 397

Query: 532 IELDPENACAYI-QLSSIFATSGEWEKSSLIRDIMREKHV 570
           ++     A      L S++A  G+ + +  +   M E+ +
Sbjct: 398 LKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI 437



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/446 (21%), Positives = 187/446 (41%), Gaps = 58/446 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+  C     + +G+QLH   LK G  N  + ++N L+ +Y +CG+  +A  +F  M
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSLISLYAKCGDLQNAEFVFSSM 432

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
             R+  SW +MI  + ++G+  K+ + F+ M  +N  +WN ++  + +            
Sbjct: 433 SERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYS 492

Query: 116 ----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                                 AD+ A + G QI  H +  GL  +  + ++ + +Y KC
Sbjct: 493 AMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKC 552

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD----RTTDTSSVMWNSMI 209
           G  + A ++ +++   D    +A+I+GY+  G    A + FD    +      + + +++
Sbjct: 553 GRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVL 612

Query: 210 SGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           SG   +    E  L F  M R +G+       + ++      G L   K +     K+ +
Sbjct: 613 SGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLID---KMPM 669

Query: 269 IDDVIVASALLDTYSKRG---MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
                V  ALL      G   +   A K   EL   D+     +  +YS  G+ +D+  +
Sbjct: 670 KPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQV 729

Query: 326 FRTMPNKSL-----ISW----NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
            + M +K +      SW    N + V  + + S  + + +    NKLD  M+K +    +
Sbjct: 730 RKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAI---RNKLDELMEKIAHLGYV 786

Query: 377 SACANISSLELGEQVFARVTIIGLDS 402
              +  S +   E++     I+ L +
Sbjct: 787 RTESPRSEIHHSEKLAVAFGIMSLPA 812


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 168/591 (28%), Positives = 280/591 (47%), Gaps = 99/591 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H   +K G  +S + + N LL+MY   G   +A L+F +MP ++  SWN+++  F+
Sbjct: 280 GRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFV 338

Query: 84  KLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKADLAAL-EYGKQIHSHILVNGLDFDSV 141
             G    +L L  +++      ++    S  A        E G+ +H  ++V+GL ++ +
Sbjct: 339 NDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQI 398

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           +G++LV++YGK                                G+M+++RRV  +     
Sbjct: 399 IGNALVSMYGKI-------------------------------GEMSESRRVLLQMPRRD 427

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVH 260
            V WN++I GY  + +  +AL  F  MR  GV  +  T+ SVLSAC   G  LE GK +H
Sbjct: 428 VVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLH 487

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
            +    G   D  V                                N++IT+Y+ CG + 
Sbjct: 488 AYIVSAGFESDEHVK-------------------------------NSLITMYAKCGDLS 516

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            ++ +F  + N+++I+WN+M+   + +G   E L L   M    + +D+FS +  +SA A
Sbjct: 517 SSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAA 576

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------- 419
            ++ LE G+Q+      +G + D  I  +  D Y KCG                      
Sbjct: 577 KLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNI 636

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +  A F+EM   G+KP  +TF ++L+AC H GLV +G  ++D +   +
Sbjct: 637 LISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDF 696

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
            ++P IEH  C++DL  R+G L EA   I +MP + +  +W S+L  C  HG+   GRK 
Sbjct: 697 GLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKA 756

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           AE + +L+PE+   Y+  S++FAT+G WE    +R  M  K++ K   CSW
Sbjct: 757 AENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSW 807



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 229/528 (43%), Gaps = 106/528 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ ++ SC       +G+Q+    +K G L S L + N L+ M    GN   A  +FD+M
Sbjct: 163 MSLVISSCGLLKDESLGRQIIGQVVKSG-LESKLAVENSLISMLGSMGNVDYANYIFDQM 221

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             R+  SWN++   + + GH E+S ++F++M     + N  + + L+S     D    ++
Sbjct: 222 SERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQ--KW 279

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+ IH   LV  + FDSV+          C      N +L M               YA 
Sbjct: 280 GRGIHG--LVVKMGFDSVV----------C----VCNTLLRM---------------YAG 308

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G+  +A  VF +      + WNS+++ ++++    +AL L   M  +G   +  T  S 
Sbjct: 309 AGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSA 368

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L+AC +  F E G+ +HG     G+  + I+ +AL+  Y K G                 
Sbjct: 369 LAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIG----------------- 411

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                          + +++ +   MP + +++WN++I G +++  P +AL  F  M   
Sbjct: 412 --------------EMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVE 457

Query: 364 DLRMDKFSLASVISACANISS-LELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
            +  +  ++ SV+SAC      LE G+ + A +   G +SD+ +  SL+  Y KC     
Sbjct: 458 GVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSS 517

Query: 418 ----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                       G + L L ++MR+ GV     +F+  LSA   
Sbjct: 518 SQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAK 577

Query: 450 CGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
             +++EGQ+    A+K  +  D  I  ++   D++++ G + E V ++
Sbjct: 578 LAVLEEGQQLHGLAVKLGFEHDSFI--FNAAADMYSKCGEIGEVVKML 623



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/552 (22%), Positives = 229/552 (41%), Gaps = 108/552 (19%)

Query: 8   LARLLQSCNTHHSI-HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +A L+ +C    S+   G Q+H    K G+L S + ++  +L +Y   G  + +  +F+E
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLL-SDVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLIS--GFAKADLAA 120
           MP RN  SW +++ G+   G  E+ + ++  M  +    N+ S +++IS  G  K +   
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDE--- 176

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
              G+QI   ++ +GL+    + +SL+++ G  G+ + AN + + M E D    +++ + 
Sbjct: 177 -SLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA 235

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA  G + ++ R+F                                 MRR     +++T+
Sbjct: 236 YAQNGHIEESFRIFSL-------------------------------MRRFHDEVNSTTV 264

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +++LS    +   + G+ +HG   K+G    V V + LL  Y+  G   +A  +F ++  
Sbjct: 265 STLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPT 324

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            D                               LISWNS++     +G  ++AL L C+M
Sbjct: 325 KD-------------------------------LISWNSLMASFVNDGRSLDALGLLCSM 353

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
                 ++  +  S ++AC      E G  +   V + GL  +QII  +LV  Y K G  
Sbjct: 354 ISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEM 413

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                            ALA F  MR  GV    IT  ++LSAC
Sbjct: 414 SESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC 473

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              G + E  K   A       + +    + ++ ++A+ G L+ + +L   +    ++  
Sbjct: 474 LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIIT 532

Query: 508 WSSILRGCVAHG 519
           W+++L     HG
Sbjct: 533 WNAMLAANAHHG 544



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 110/471 (23%), Positives = 206/471 (43%), Gaps = 73/471 (15%)

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSV 141
           + K G  + +  LF++MP +N+ SWN ++SG  +  L  LE G +    +   G+   S 
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLY-LE-GMEFFRKMCDLGIKPSSF 59

Query: 142 LGSSLVNLYGKCGD-FNSANQVLNMMKEP----DDFCLSALISGYANCGKMNDARRVFDR 196
           + +SLV   G+ G  F    QV   + +     D +  +A++  Y   G ++ +R+VF+ 
Sbjct: 60  VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             D + V W S++ GY    E  E + ++  MR  GV  + ++++ V+S+C  L     G
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLG 179

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           +Q+ G   K G                          L S+L V      N++I++  S 
Sbjct: 180 RQIIGQVVKSG--------------------------LESKLAVE-----NSLISMLGSM 208

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G ++ A +IF  M  +  ISWNS+    +QNG   E+  +F  M +    ++  ++++++
Sbjct: 209 GNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 268

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
           S   ++   + G  +   V  +G DS   +  +L+  Y   G                  
Sbjct: 269 SVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLI 328

Query: 419 ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                           DAL L   M ++G     +TFT+ L+AC      ++G+     +
Sbjct: 329 SWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLV 388

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
                   +I   + +V ++ + G ++E+  ++ QMP   DV  W++++ G
Sbjct: 389 VVSGLFYNQIIG-NALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALIGG 437



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 129/271 (47%), Gaps = 28/271 (10%)

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
           +Y+  GR++ A+H+F  MP ++ +SWN+M+ G+ + G  +E ++ F  M  L ++   F 
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 372 LASVISACANISSL-ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LFNEM 428
           +AS+++AC    S+   G QV   V   GL SD  +ST+++  Y   G  + +  +F EM
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC----MVDLFA 484
            +  V    +++T+++      G  +E    +  M+         E   C    M  + +
Sbjct: 121 PDRNV----VSWTSLMVGYSDKGEPEEVIDIYKGMRG--------EGVGCNENSMSLVIS 168

Query: 485 RAGCLNEA------VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
             G L +       +  + +   E+ + + +S++    + G+      + ++M E D   
Sbjct: 169 SCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERD--- 225

Query: 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
             ++  +++ +A +G  E+S  I  +MR  H
Sbjct: 226 TISWNSIAAAYAQNGHIEESFRIFSLMRRFH 256


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 173/586 (29%), Positives = 281/586 (47%), Gaps = 98/586 (16%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH H +  G   S + + + L+ +Y +      A  +FD MP R+   WN MI G +K  
Sbjct: 130 LHAHSIIDG-YGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNC 188

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIHSHILVNGLDFDSVLGS 144
             + S+QLF  M        +  ++    A A+L  L+ G  I    L  G         
Sbjct: 189 CFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIG--------- 239

Query: 145 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 204
                +G C                 D+ L+ LIS Y+ CG +N AR +F R      + 
Sbjct: 240 -----FGFC-----------------DYVLTGLISLYSKCGDVNTARLLFRRINRPDLIA 277

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           +N+MISG+ +N     ++ LF ++  +G    +ST+  ++   S  G L     +HG   
Sbjct: 278 YNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCV 337

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
           K G+I +  V++A    Y+K                     LN           I+ A+H
Sbjct: 338 KSGIILNPTVSTAFTAIYNK---------------------LN----------EIDLARH 366

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
           +F   P K++++WN+MI G +QNGS   A+ LF  M K +   +  ++ +++SACA + S
Sbjct: 367 LFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGS 426

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------------- 418
           L  G+ V   +    L+ +  +ST+LVD Y KCG                          
Sbjct: 427 LSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFG 486

Query: 419 -------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                  ++AL L+NEM + G  P+ +TF ++L AC H GLV EG++ F  M  +Y I+P
Sbjct: 487 YGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEP 546

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            IEHY+CMVD+  R+G L +A+  I++MP E    +W ++L  C+ H D  + R  +ER+
Sbjct: 547 LIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERL 606

Query: 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            ELDP +   Y+ LS+I++    + K++ IR +++++ + K PGC+
Sbjct: 607 FELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCT 652



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 142/540 (26%), Positives = 241/540 (44%), Gaps = 44/540 (8%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q H  F+  G     L    +L Q          A  LF  +P+ + F +N ++ GF   
Sbjct: 30  QTHAQFILNG-YRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLN 88

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSS 145
                S+ L+  + +  + S +     FA A  +  ++   +H+H +++G   +  +GS+
Sbjct: 89  DSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSA 148

Query: 146 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 205
           LV+LY K      A +V + M E D                               +V+W
Sbjct: 149 LVDLYCKFSRVVYARKVFDGMPERD-------------------------------TVLW 177

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
           N+MI+G + N    +++ LF +M  +GV  D+ST+ +VL A + L  L+ G  +   A K
Sbjct: 178 NTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALK 237

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
           +G      V + L+  YSK G  + A  LF  +   D I  N MI+ +++ G  E +  +
Sbjct: 238 IGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKL 297

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           FR +        +S IVGL    SP   L L C+++   ++       +V +A   I + 
Sbjct: 298 FRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYN- 356

Query: 386 ELGEQVFARVTIIGLDSDQIIS-TSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTA 442
           +L E   AR          +++  +++  Y + G    A++LF EM  T   P  +T T 
Sbjct: 357 KLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITT 416

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           ILSAC   G +  G KW   +    +++P I   + +VD++A+ G ++EA  L + M  E
Sbjct: 417 ILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-E 474

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS-----GEWEK 557
            +   W++++ G   HG      K+   M+ L   N  A   LS ++A S     GE E+
Sbjct: 475 KNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLG-YNPSAVTFLSVLYACSHAGLVGEGEE 533



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 138/346 (39%), Gaps = 74/346 (21%)

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
            S N L S   KA  +   +  Q H+  ++NG  FD    ++L  L  K  DF++     
Sbjct: 10  LSRNTLFSLINKA--STFPHLAQTHAQFILNGYRFDL---ATLTKLTQKLFDFSATRH-- 62

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
                                     AR +F         ++N ++ G+  N+  + ++ 
Sbjct: 63  --------------------------ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSIS 96

Query: 224 LFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
           L+  +RRN  L  D  T A  ++ACS+    +H   +H H+   G   +V V SAL+D Y
Sbjct: 97  LYTHLRRNTNLSPDNFTYAFAVAACSND---KHLMLLHAHSIIDGYGSNVFVGSALVDLY 153

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
            K      A K+F  +   DT+L NTMI                                
Sbjct: 154 CKFSRVVYARKVFDGMPERDTVLWNTMIN------------------------------- 182

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           GL +N    +++ LF  M    +R+D  ++ +V+ A A +  L++G  +      IG   
Sbjct: 183 GLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGF 242

Query: 403 DQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSA 446
              + T L+  Y KCG    A  LF  +     +P +I + A++S 
Sbjct: 243 CDYVLTGLISLYSKCGDVNTARLLFRRIN----RPDLIAYNAMISG 284



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 7/167 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    S+  GK +H H +K   L   + ++  L+ MY +CGN ++A  LFD M
Sbjct: 414 ITTILSACAQLGSLSFGKWVH-HLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSM 472

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKADLAALEYGK 125
             +N  +WN MI G+   G+  ++L+L+N M     N  +   L   +A +    +  G+
Sbjct: 473 SEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGE 532

Query: 126 QIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EP 169
           +I  H +VN    + ++   + +V++ G+ G    A + +  M  EP
Sbjct: 533 EIF-HNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEP 578


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 189/680 (27%), Positives = 308/680 (45%), Gaps = 141/680 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEM 67
           AR LQ C        G+ +H H +++G +    L  AN LL MY + G    A  LFD M
Sbjct: 63  ARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRM 122

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P RN  S+  +++   + G  E +  LF  +     + N F    ++      D A L  
Sbjct: 123 PERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 124 GKQIHS-------------------------------HILVNGLDFDSVLGSSLVNLYGK 152
           G  +HS                               H+    +  D+V+ +++V+ Y +
Sbjct: 183 G--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSE 240

Query: 153 CGDFNSANQVLNMMK----EPDDFCLS--------------------------------- 175
                +A +V + M+    +P+ F L+                                 
Sbjct: 241 NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHV 300

Query: 176 --ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
             AL+  YA CG + DAR  F+       ++ + MIS Y  +N++ +A  LF ++ R+ V
Sbjct: 301 GGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSV 360

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           L +  +L+SVL AC+++  L+ GKQ+H HA K+G   D+ V +AL+D Y+K      + K
Sbjct: 361 LPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLK 420

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +FS L+  + +  NT++                               VG SQ+G   EA
Sbjct: 421 IFSSLRDANEVSWNTIV-------------------------------VGFSQSGLGEEA 449

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L +FC M    +   + + +SV+ ACA+ +S+    Q+   +     ++D +I  SL+D 
Sbjct: 450 LSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDT 509

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           Y KCGY                                 DAL LF+ M  + V+   ITF
Sbjct: 510 YAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITF 569

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
            A+LS C   GLV  G   FD+M+  + I P +EHY+C+V L  RAG LN+A+  I  +P
Sbjct: 570 VALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIP 629

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
                 +W ++L  C+ H +  LGR  AE+++E++P++   Y+ LS+++A +G  ++ +L
Sbjct: 630 SAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVAL 689

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R  MR   V K+PG SW +
Sbjct: 690 LRKSMRNIGVRKVPGLSWVE 709



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 34/251 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +LQ+C     +  GKQ+H H +K G   S L + N L+  Y +C +   +L +F  +
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIG-HESDLFVGNALMDFYAKCNDMDSSLKIFSSL 425

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
              N  SWN ++ GF + G  E++L +F  M         +  S   +  A  A++ +  
Sbjct: 426 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG 485

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH  I  +  + D+V+G+SL++ Y KCG    A +V   + E D    +A+ISGYA  G
Sbjct: 486 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 545

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           +  DA  +FDR                               M ++ V  +  T  ++LS
Sbjct: 546 QAADALELFDR-------------------------------MNKSNVESNDITFVALLS 574

Query: 246 ACSSLGFLEHG 256
            CSS G + HG
Sbjct: 575 VCSSTGLVNHG 585



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 47/292 (16%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--DVIVASALLDTYSKRGMPSDACK 293
           D+   A  L  C + G    G+ VHGH  + G +   D+  A+ LL+ Y K G  + A +
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF  +   + +   T++  ++  G  E A  +FR +       W          G  +  
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL------RW---------EGHEVNQ 162

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACA-------------------NISSL-ELGEQVFA 393
             +   M KL + MD   LA  + +CA                   ++ SL    E VF 
Sbjct: 163 F-VLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFN 221

Query: 394 RVTIIGLDSDQIISTSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
            +    +  D ++ T++V  Y +  C  +A  +F++MR +G KP     T++L A     
Sbjct: 222 GI----VRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLP 277

Query: 452 LVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
            V  G+     A+K     +P +     ++D++A+ G + +A    E +P++
Sbjct: 278 SVVLGKGIHGCAIKTLNDTEPHVG--GALLDMYAKCGDIKDARLAFEMIPYD 327



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 34/292 (11%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T++ Y + +L++C +  SI    Q+H   ++K   N+   I N L+  Y +CG   DAL 
Sbjct: 464 TQVTY-SSVLRACASTASIRHAGQIHCS-IEKSTFNNDTVIGNSLIDTYAKCGYIRDALK 521

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADL 118
           +F  +  R+  SWNA+I G+   G    +L+LF+ M     + ND ++  L+S  +   L
Sbjct: 522 VFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGL 581

Query: 119 AALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSA 176
             + +G  +   + ++ G+       + +V L G+ G  N A Q + ++   P      A
Sbjct: 582 --VNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRA 639

Query: 177 LISG---YANC--GKMNDARRV-FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
           L+S    + N   G+ +  + +  +   +T+ V+ ++M   Y +     +  LL   MR 
Sbjct: 640 LLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNM---YAAAGSLDQVALLRKSMRN 696

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--DVIVASALLD 280
            GV +              L ++E   ++  HA  VG +D  D+ V +A+L+
Sbjct: 697 IGVRK-----------VPGLSWVEIKGEI--HAFSVGSVDHPDMRVINAMLE 735


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 173/607 (28%), Positives = 290/607 (47%), Gaps = 107/607 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L + C T  ++  GK  H    +  + NS   I N +L+MY  C + T A   FD++  +
Sbjct: 98  LFKMCGTLGALSDGKLFHNRLQR--MANSNKFIDNCILKMYCDCKSFTSAERFFDKIVDQ 155

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  SW+ +I  + + G  +++++LF       + P  + FS   LI  F   D + L+ G
Sbjct: 156 DLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFS--TLIMSF--TDPSMLDLG 211

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQIHS ++  G   +  + + + N+Y KCG  + A    N M   +    + L+ GY   
Sbjct: 212 KQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKA 271

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
            +  D                               ALLLF KM   GV  D    + +L
Sbjct: 272 ARNRD-------------------------------ALLLFGKMISEGVELDGFVFSIIL 300

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC++LG L  GKQ+H +  K+G+  +V V + L+D Y K                    
Sbjct: 301 KACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVK-------------------- 340

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      C R E A+  F ++   +  SW+++I G  Q+G    AL++F  +    
Sbjct: 341 -----------CARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKG 389

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           + ++ F   ++  AC+ +S L  G Q+ A     GL +     ++++  Y KCG      
Sbjct: 390 VLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAH 449

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                      ++AL LF EM+ +GV+P  +TF  +L+AC H G
Sbjct: 450 QAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSG 509

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LVKEG+K  D+M  +Y ++P I+HY+CM+D+++RAG L EA+ +I  +PFE DV  W S+
Sbjct: 510 LVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSL 569

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L GC +H +  +G   A+ +  LDP ++  Y+ + +++A +G+W++++  R +M E+++ 
Sbjct: 570 LGGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLR 629

Query: 572 KLPGCSW 578
           K   CSW
Sbjct: 630 KEVSCSW 636


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 168/591 (28%), Positives = 280/591 (47%), Gaps = 99/591 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H   +K G  +S + + N LL+MY   G   +A L+F +MP ++  SWN+++  F+
Sbjct: 370 GRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFV 428

Query: 84  KLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKADLAAL-EYGKQIHSHILVNGLDFDSV 141
             G    +L L  +++      ++    S  A        E G+ +H  ++V+GL ++ +
Sbjct: 429 NDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQI 488

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           +G++LV++YGK                                G+M+++RRV  +     
Sbjct: 489 IGNALVSMYGKI-------------------------------GEMSESRRVLLQMPRRD 517

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVH 260
            V WN++I GY  + +  +AL  F  MR  GV  +  T+ SVLSAC   G  LE GK +H
Sbjct: 518 VVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLH 577

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
            +    G   D  V                                N++IT+Y+ CG + 
Sbjct: 578 AYIVSAGFESDEHVK-------------------------------NSLITMYAKCGDLS 606

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            ++ +F  + N+++I+WN+M+   + +G   E L L   M    + +D+FS +  +SA A
Sbjct: 607 SSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAA 666

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------- 419
            ++ LE G+Q+      +G + D  I  +  D Y KCG                      
Sbjct: 667 KLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNI 726

Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +  A F+EM   G+KP  +TF ++L+AC H GLV +G  ++D +   +
Sbjct: 727 LISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDF 786

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
            ++P IEH  C++DL  R+G L EA   I +MP + +  +W S+L  C  HG+   GRK 
Sbjct: 787 GLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKA 846

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           AE + +L+PE+   Y+  S++FAT+G WE    +R  M  K++ K   CSW
Sbjct: 847 AENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSW 897



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 223/513 (43%), Gaps = 106/513 (20%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G+Q+    +K G L S L + N L+ M    GN   A  +FD+M  R+  SWN++   +
Sbjct: 268 LGRQIIGQVVKSG-LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAY 326

Query: 83  MKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            + GH E+S ++F++M     + N  + + L+S     D    ++G+ IH   LV  + F
Sbjct: 327 AQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQ--KWGRGIHG--LVVKMGF 382

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           DSV+          C      N +L M               YA  G+  +A  VF +  
Sbjct: 383 DSVV----------C----VCNTLLRM---------------YAGAGRSVEANLVFKQMP 413

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
               + WNS+++ ++++    +AL L   M  +G   +  T  S L+AC +  F E G+ 
Sbjct: 414 TKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRI 473

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +HG     G+  + I+ +AL+  Y K G                                
Sbjct: 474 LHGLVVVSGLFYNQIIGNALVSMYGKIG-------------------------------E 502

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           + +++ +   MP + +++WN++I G +++  P +AL  F  M    +  +  ++ SV+SA
Sbjct: 503 MSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSA 562

Query: 379 CANISS-LELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------------------- 417
           C      LE G+ + A +   G +SD+ +  SL+  Y KC                    
Sbjct: 563 CLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIIT 622

Query: 418 -------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AM 463
                        G + L L ++MR+ GV     +F+  LSA     +++EGQ+    A+
Sbjct: 623 WNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAV 682

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
           K  +  D  I  ++   D++++ G + E V ++
Sbjct: 683 KLGFEHDSFI--FNAAADMYSKCGEIGEVVKML 713



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 125/568 (22%), Positives = 229/568 (40%), Gaps = 115/568 (20%)

Query: 34  KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQ 93
           KG++  ++   N L+ MY + G    A  LFD MP RN  SWN M+ G +++G   + ++
Sbjct: 100 KGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGME 159

Query: 94  LFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 149
            F  M     + + F    L++   ++  +    G Q+H  +  +GL  D  + +++++L
Sbjct: 160 FFRKMCDLGIKPSSFVIASLVTACGRSG-SMFREGVQVHGFVAKSGLLSDVYVSTAILHL 218

Query: 150 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND-------------------- 189
           YG  G  + + +V   M + +    ++L+ GY++ G+  +                    
Sbjct: 219 YGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVK 278

Query: 190 -------------------------ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
                                    A  +FD+ ++  ++ WNS+ + Y  N    E+  +
Sbjct: 279 SGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRI 338

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
           F  MRR     +++T++++LS    +   + G+ +HG   K+G    V V + LL  Y+ 
Sbjct: 339 FSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAG 398

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
            G   +A  +F ++   D                               LISWNS++   
Sbjct: 399 AGRSVEANLVFKQMPTKD-------------------------------LISWNSLMASF 427

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
             +G  ++AL L C+M      ++  +  S ++AC      E G  +   V + GL  +Q
Sbjct: 428 VNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQ 487

Query: 405 IISTSLVDFYCKCGY---------------------------------DALALFNEMRNT 431
           II  +LV  Y K G                                   ALA F  MR  
Sbjct: 488 IIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVE 547

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
           GV    IT  ++LSAC   G + E  K   A       + +    + ++ ++A+ G L+ 
Sbjct: 548 GVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSS 607

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVAHG 519
           + +L   +    ++  W+++L     HG
Sbjct: 608 SQDLFNGLD-NRNIITWNAMLAANAHHG 634



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 151/321 (47%), Gaps = 37/321 (11%)

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
           F + G++ +    ++   D +  +   ++T + R + +   K    L V  T   NT+I 
Sbjct: 60  FEKSGRKKNHWNPEISCFDQIGFSQITIET-TGRAVHALCVKGLVRLSVLHT---NTLIN 115

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
           +Y+  GR++ A+H+F  MP ++ +SWN+M+ G+ + G  +E ++ F  M  L ++   F 
Sbjct: 116 MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 175

Query: 372 LASVISACANISSL-ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LFNEM 428
           +AS+++AC    S+   G QV   V   GL SD  +ST+++  Y   G  + +  +F EM
Sbjct: 176 IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 235

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488
            +  V    +++T+++      G                  +PE      ++D++     
Sbjct: 236 PDRNV----VSWTSLMVGYSDKG------------------EPEE-----VIDIYKDESL 268

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
             + +  + +   E+ + + +S++    + G+      + ++M E D     ++  +++ 
Sbjct: 269 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERD---TISWNSIAAA 325

Query: 549 FATSGEWEKSSLIRDIMREKH 569
           +A +G  E+S  I  +MR  H
Sbjct: 326 YAQNGHIEESFRIFSLMRRFH 346


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 176/607 (28%), Positives = 299/607 (49%), Gaps = 100/607 (16%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           + L+ LL  C+   ++  G  LH   LK G   S + ++N +L MY +CG+ T A  +FD
Sbjct: 4   ETLSSLLHHCSKTKALRCGLSLHAAVLKTGT-QSDVFMSNHVLNMYAKCGHTTFARQVFD 62

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDFSWNMLISGFAKADLAALEYG 124
           EM  +N  SW+AMI G+ + G  + ++ L++ M    N++ +  +IS  A A L+A+  G
Sbjct: 63  EMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLVPNEYVFASVIS--ACASLSAVTLG 120

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           ++IHS  L  G +  S + +SL+++Y K                               C
Sbjct: 121 QKIHSRSLKFGYESISFVSNSLISMYMK-------------------------------C 149

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
            + +DA  VF  T + + V +N++I+G++ N +    L  F  MR+ G++ D      VL
Sbjct: 150 NQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVL 209

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
             C++   L+ G ++H    K+            LD+    G                  
Sbjct: 210 GICTTTENLKRGAELHCQTVKLN-----------LDSTPFIG------------------ 240

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-L 363
             N +IT+YS    I++A+  FR +  K +ISWN++I   S      + L +F +M +  
Sbjct: 241 --NVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEET 298

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
           ++R D F+  S ++ACA ++S+  G+Q+ A +    L  D  +  +LV+ Y KCG     
Sbjct: 299 NVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYA 358

Query: 419 YD----------------------------ALALFNEMRNTGVKPTIITFTAILSACDHC 450
           YD                            A+ LF +M  +G++P  +TF  +L+AC+H 
Sbjct: 359 YDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHA 418

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV +GQ +F++M+  Y I P+IEH+SC++D+  RAG LNEA   + + PF  D  +  S
Sbjct: 419 GLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVS 478

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L     HGD  +G ++A+ +++L P     Y+ LS+++A+ G W+  +  R  ++   +
Sbjct: 479 LLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGL 538

Query: 571 GKLPGCS 577
            K PG S
Sbjct: 539 KKEPGHS 545


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 176/607 (28%), Positives = 299/607 (49%), Gaps = 100/607 (16%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           + L+ LL  C+   ++  G  LH   LK G   S + ++N +L MY +CG+ T A  +FD
Sbjct: 4   ETLSSLLHHCSKTKALRCGLSLHAAVLKTGT-QSDVFMSNHVLNMYAKCGHTTFARQVFD 62

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDFSWNMLISGFAKADLAALEYG 124
           EM  +N  SW+AMI G+ + G  + ++ L++ M    N++ +  +IS  A A L+A+  G
Sbjct: 63  EMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLVPNEYVFASVIS--ACASLSAVTLG 120

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           ++IHS  L  G +  S + +SL+++Y K                               C
Sbjct: 121 QKIHSRSLKFGYESISFVSNSLISMYMK-------------------------------C 149

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
            + +DA  VF  T + + V +N++I+G++ N +    L  F  MR+ G++ D      VL
Sbjct: 150 NQCSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVL 209

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
             C++   L+ G ++H    K+            LD+    G                  
Sbjct: 210 GICTTTENLKRGAELHCQTVKLN-----------LDSTPFIG------------------ 240

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-L 363
             N +IT+YS    I++A+  FR +  K +ISWN++I   S      + L +F +M +  
Sbjct: 241 --NVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEET 298

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
           ++R D F+  S ++ACA ++S+  G+Q+ A +    L  D  +  +LV+ Y KCG     
Sbjct: 299 NVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYA 358

Query: 419 YD----------------------------ALALFNEMRNTGVKPTIITFTAILSACDHC 450
           YD                            A+ LF +M  +G++P  +TF  +L+AC+H 
Sbjct: 359 YDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHA 418

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV +GQ +F++M+  Y I P+IEH+SC++D+  RAG LNEA   + + PF  D  +  S
Sbjct: 419 GLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVS 478

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L     HGD  +G ++A+ +++L P     Y+ LS+++A+ G W+  +  R  ++   +
Sbjct: 479 LLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGL 538

Query: 571 GKLPGCS 577
            K PG S
Sbjct: 539 KKEPGHS 545


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 180/608 (29%), Positives = 287/608 (47%), Gaps = 98/608 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++++C    ++ +G+ +H H + K  L+    +   L+ MY++C    DA  LFD+M
Sbjct: 33  LPFVIRACRDLKNLQMGRLIH-HIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKM 91

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF--SWNMLISGFAKADLAALEYGK 125
             R+  +W  MI G+ + G   +SL LF  M ++        M+   FA A L A+   +
Sbjct: 92  QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 151

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            I  +I       D +LG++++++Y KCG   SA ++ + M+E +    SA+I+ Y    
Sbjct: 152 IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY---- 207

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                                    GY  + +  +AL LF  M  +G+L D  TLAS+L 
Sbjct: 208 -------------------------GY--HGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS L  L+ G+ +H    K G+  D  V +AL+D Y K     DA  LF ++   D + 
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVT 300

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
              MI  Y+ CG             N+SL+                    LF  M +  +
Sbjct: 301 WTVMIGGYAECGN-----------ANESLV--------------------LFDKMREEGV 329

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             DK ++ +V+ ACA + ++     +   +       D I+ T+++D + KCG       
Sbjct: 330 VPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESARE 389

Query: 419 -YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
            +D                         AL LF  M  +G+ P  IT  ++L AC H GL
Sbjct: 390 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGL 449

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+EG ++F  M   Y +  +++HY+C+VDL  RAG L+EA+ LIE M  E D G+W + L
Sbjct: 450 VEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFL 509

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H D  L  K A  ++EL P+N   YI LS+I+A +G WE  +  RD+M ++ + K
Sbjct: 510 GACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKK 569

Query: 573 LPGCSWAD 580
           +PG +W +
Sbjct: 570 IPGWTWIE 577



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 213/487 (43%), Gaps = 108/487 (22%)

Query: 78  MIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILV 133
           M+ GF K+G        F  +     + ++++   +I   A  DL  L+ G+ IH  +  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIR--ACRDLKNLQMGRLIHHIVYK 58

Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
            GLD D  + ++LV++Y KC +   A  + + M+E D    + +I GYA CGK N     
Sbjct: 59  FGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKAN----- 113

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253
                                     E+L+LF KMR  GV+ D   + +V+ AC+ LG +
Sbjct: 114 --------------------------ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAM 147

Query: 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
              + +  +  +     DVI+ +A++D Y+K G    A ++F  ++  + I  + MI  Y
Sbjct: 148 HKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY 207

Query: 314 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
              G+   A  +FR M +  ++                                DK +LA
Sbjct: 208 GYHGQGRKALDLFRMMLSSGMLP-------------------------------DKITLA 236

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------------- 417
           S++ AC+++ +L++G  +   V   GLD D  +  +LVD Y KC                
Sbjct: 237 SLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPER 296

Query: 418 ----------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                     GY       ++L LF++MR  GV P  +    ++ AC   G + + +   
Sbjct: 297 DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTID 356

Query: 461 DAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           D + + ++ +D  +   + M+D+ A+ GC+  A  + ++M  E +V  WS+++    A+G
Sbjct: 357 DYIQRKKFQLDVILG--TAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMI---AAYG 410

Query: 520 DKGLGRK 526
             G GRK
Sbjct: 411 YHGQGRK 417



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 167/398 (41%), Gaps = 73/398 (18%)

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           M+ G+    +       F ++ R G   D  TL  V+ AC  L  L+ G+ +H    K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
           +  D  V +AL+D Y K     DA  LF +++  D +    MI  Y+ CG+         
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK--------- 111

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
              N+SL+                    LF  M +  +  DK ++ +V+ ACA + ++  
Sbjct: 112 --ANESLV--------------------LFEKMREEGVVPDKVAMVTVVFACAKLGAMHK 149

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD------------------- 420
              +   +       D I+ T+++D Y KCG        +D                   
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 209

Query: 421 ------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                 AL LF  M ++G+ P  IT  ++L AC     ++ G +    + +++ +D  ++
Sbjct: 210 HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG-RLIHHIVYKFGLD--LD 266

Query: 475 HYSC--MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           H+ C  +VD++ +   + +A  L ++MP E D+  W+ ++ G    G+      + ++M 
Sbjct: 267 HFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGGYAECGNANESLVLFDKMR 325

Query: 533 E--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           E  + P+   A + +    A  G   K+  I D ++ K
Sbjct: 326 EEGVVPDKV-AMVTVVFACAKLGAMHKARTIDDYIQRK 362


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 283/616 (45%), Gaps = 121/616 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++QSC    S+ +GK +H   + +G       ++  LL MY                   
Sbjct: 173 IIQSCIGLDSLELGKMVHAQIVMRGFATHIF-VSTSLLNMYA------------------ 213

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
                        KLG  E S  +FN+M + N  SWN +ISG     L           H
Sbjct: 214 -------------KLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGL-----------H 249

Query: 131 ILVNGLDFDSVLGSSLVNLY---------GKCGDFNSANQVLNMMKE----PDDFCLSAL 177
           +    L      G+   N+Y         GK  D N   +V N   E     +    +AL
Sbjct: 250 LEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTAL 309

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSV--MWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           I  Y+ CG ++DAR VFD       V   WN+MISGY  +    EAL L+ +M +NG+  
Sbjct: 310 IDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITS 369

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  T  SV +A ++   L+ G+ VHG   K G+  D++V S                   
Sbjct: 370 DLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGL--DLMVVS------------------- 408

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                    + N +   YS CG +ED + +F  M  + ++SW +++   SQ+    EAL 
Sbjct: 409 ---------VNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALA 459

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
            FC M +     ++F+ +SV+ +CA++  LE G QV   +   GLD+++ I ++L+D Y 
Sbjct: 460 TFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYA 519

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                  DAL LF  M  +G+K   +T   
Sbjct: 520 KCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLC 579

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L AC H G+V+EG  +F  M+  Y + PE+EHY+C++DL  R G L++A+  I +MP E
Sbjct: 580 VLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPME 639

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
            +  +W ++L GC  HG+  LG   A +++ + PE +  Y+ LS+ +  +G +E    +R
Sbjct: 640 PNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLR 699

Query: 563 DIMREKHVGKLPGCSW 578
           ++M+++ V K PG SW
Sbjct: 700 NVMKDQGVKKEPGYSW 715



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 164/592 (27%), Positives = 254/592 (42%), Gaps = 108/592 (18%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA-NRLLQMYMRCGNPTDA 60
            T++  L  +L+ C    SI   K +H   LK    +  L +  N    +Y +C     A
Sbjct: 61  QTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAA 120

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFA 114
             +FDEMP+RN FSW  MI G  + G      + F       ++P K  F+++ +I    
Sbjct: 121 CGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDK--FAYSAIIQSCI 178

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
             D  +LE GK +H+ I++ G      + +SL+N+Y K G    +  V NMM E +    
Sbjct: 179 GLD--SLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQ--- 233

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
                                       V WN+MISG  SN    EA  LF +M+     
Sbjct: 234 ----------------------------VSWNAMISGCTSNGLHLEAFDLFVRMKNGACT 265

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  TL SV  A   L  +  GK+V   A ++G+  +V+V +AL+D YSK G   DA   
Sbjct: 266 PNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDA--- 322

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                V+DT  +N        CG            P      WN+MI G SQ+G   EAL
Sbjct: 323 ---RSVFDTNFIN--------CG---------VNTP------WNAMISGYSQSGCSQEAL 356

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDF 413
           +L+  M +  +  D ++  SV +A A   SL+ G  V   V   GLD   + ++ ++ D 
Sbjct: 357 ELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADA 416

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           Y KCG+                                 +ALA F  MR  G  P   TF
Sbjct: 417 YSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTF 476

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           +++L +C     ++ G++    +  +  +D E    S ++D++A+ G + EA  + +++ 
Sbjct: 477 SSVLISCASLCFLEYGRQ-VHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS 535

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
              D+  W++I+ G   HG      ++  RM EL    A A   L  +FA S
Sbjct: 536 -NPDIVSWTAIISGYAQHGLVEDALQLFRRM-ELSGIKANAVTLLCVLFACS 585



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 170/396 (42%), Gaps = 47/396 (11%)

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+ C +   A  VFD     +   W  MI G   +    +    F +M  +G+L D    
Sbjct: 111 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 170

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           ++++ +C  L  LE GK VH      G    + V+++LL+ Y+K G              
Sbjct: 171 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLG-------------- 216

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                             IED+  +F  M   + +SWN+MI G + NG  +EA DLF  M
Sbjct: 217 -----------------SIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM 259

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                  + ++L SV  A   +  + +G++V    + +G++ + ++ T+L+D Y KCG  
Sbjct: 260 KNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSL 319

Query: 419 YDALALFN-EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
           +DA ++F+    N GV      + A++S     G  +E  + +  M  Q  I  ++  Y 
Sbjct: 320 HDARSVFDTNFINCGVN---TPWNAMISGYSQSGCSQEALELYVQM-CQNGITSDLYTYC 375

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG-----RKVAERMI 532
            + +  A +  L     ++  M  +  + +    +   +A      G     RKV +RM 
Sbjct: 376 SVFNAIAASKSLQFG-RVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRME 434

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           E D     ++  L + ++ S   E++     +MRE+
Sbjct: 435 ERD---IVSWTTLVTAYSQSSLGEEALATFCLMREE 467


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/565 (29%), Positives = 266/565 (47%), Gaps = 81/565 (14%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y R G   +A  LFD MP RN  SWNAM+ G+++ G  +++ +LF+ MP ++D SW
Sbjct: 104 LLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPARDDVSW 163

Query: 107 NMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
            M++SG+ +         ++I            + + ++L++ Y   G    A ++   M
Sbjct: 164 LMMVSGYMRRK--RFREAREIFDRAPSPP---PTSVCNALLSGYAGYGYLKDAEELFGRM 218

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           + PD    +A+I+GY   G M  ARR+FD      +V W +++ GY+ N +   A  +F 
Sbjct: 219 QRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQ 278

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            M    VL   + +          GF                     V S  LD      
Sbjct: 279 DMPDRDVLAWNTMMG---------GF---------------------VVSDRLD------ 302

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
              DA +LF+++   D +  NT++  Y   G ++ A   FR+M  K   SWN++I G   
Sbjct: 303 ---DALRLFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGYKD 359

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
            G    AL L   M +   R D+ + + VIS CA++++L  G  V       G + D ++
Sbjct: 360 EG----ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICTIKTGFEHDALV 415

Query: 407 STSLVDFYCKCGY---------------------------------DALALFNEMRNTGV 433
            +SL+  Y KCG                                  +ALALF+ M     
Sbjct: 416 MSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALALFDRMTKDRF 475

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
            P   TF ++LSAC H G + EG  +F +M+  +++ P  +HYSCMVDL  R+G +++A 
Sbjct: 476 SPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYSCMVDLLGRSGFVHQAY 535

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
           N   ++P    +  W ++   C AHGD  LG  VA+ +++  P +   Y  LS+I+A  G
Sbjct: 536 NFTRKIPSNLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRPSDGGMYTLLSNIYAAKG 595

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSW 578
            W  ++ +R +M+E+ + K  GCSW
Sbjct: 596 MWSSAATVRGLMKEQGLKKETGCSW 620



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 187/420 (44%), Gaps = 51/420 (12%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           + N LL  Y   G   DA  LF  M R +  SWNAMI G+ + G  + + +LF+ MP K+
Sbjct: 194 VCNALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKD 253

Query: 103 DFSWNMLISGFAK-ADL-AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
             SW  ++ G+ +  D+ AA E  + +    +   L +++++G  +V+        + A 
Sbjct: 254 TVSWTAIVRGYLQNGDVDAAWEVFQDMPDRDV---LAWNTMMGGFVVS-----DRLDDAL 305

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           ++   M + D    + ++ GY   G M+ A   F    +     WN++ISGY    +D  
Sbjct: 306 RLFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGY----KDEG 361

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL L  +M R G   D +T + V+S C+SL  L  G+ VH    K G   D +V S+L+ 
Sbjct: 362 ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICTIKTGFEHDALVMSSLIS 421

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            YSK G+ ++A ++F  +   DT+  N MI  Y                           
Sbjct: 422 MYSKCGLITEASQVFDLIVQRDTVTWNAMIATY--------------------------- 454

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI--- 397
               + +G   EAL LF  M K     D  +  SV+SACA+   L  G   F  +     
Sbjct: 455 ----AYHGLAAEALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWN 510

Query: 398 IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
           +   SD    + +VD   + G+   A +N  R       I  +  + S+C+  G ++ G+
Sbjct: 511 LVPRSDHY--SCMVDLLGRSGFVHQA-YNFTRKIPSNLQINAWETLFSSCNAHGDIQLGE 567


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 179/602 (29%), Positives = 294/602 (48%), Gaps = 98/602 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    +I  G+ LH + +K  +L+S   + + LL MY R G    +  +F EMP R
Sbjct: 108 VLKACGQSSNIAYGESLHAYAVKTSLLSSVF-VGSSLLDMYKRVGKIEKSCRVFSEMPFR 166

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF--SWNMLISGFAKADLAALEYGKQIH 128
           N  +W A+I G +  G  ++ L  F+ M    +   ++   I+  A A L  ++YGKQIH
Sbjct: 167 NAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIH 226

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           +H++V G D    + +SL  +Y +CG+              D  CL              
Sbjct: 227 THVIVRGFDATVWVANSLATMYTECGEMR------------DGLCL-------------- 260

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                F+  ++   V W S+I  Y     + +A+  F KMR + V  +  T A++ SAC+
Sbjct: 261 -----FENMSERDVVSWTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACA 315

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           SL  L  G+Q+H +   +G+ D + V+++++  YS  G    A  LF  ++  D I  +T
Sbjct: 316 SLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWST 375

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +I  YS  G  E+A   F         SW      + Q+G                 +  
Sbjct: 376 IIGGYSQAGFGEEAFKYF---------SW------MRQSGP----------------KPT 404

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
            F+LAS++S   N++ LE G QV A     GL+ +  + ++L++ Y KCG          
Sbjct: 405 DFALASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIKEASKIFE 464

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +A+ LF +    G  P  +TF ++L+AC H G +  
Sbjct: 465 ETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVLTACTHSGQLDL 524

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G  +F+ M+ +Y++ P  EHY CMVDL  RAG L+EA  +I++M ++ D  +W+++L  C
Sbjct: 525 GFHYFNLMQEKYNMRPAKEHYGCMVDLLCRAGRLSEAEKMIDEMSWKKDDVVWTTLLIAC 584

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
            A GD   GR+ AER++ELDP  A A + L++I++++G  E+++ +R  M+ K V K PG
Sbjct: 585 KAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPG 644

Query: 576 CS 577
            S
Sbjct: 645 WS 646



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 121/563 (21%), Positives = 243/563 (43%), Gaps = 102/563 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQ 100
           N  L+  +  GN   A  +FD+MP R+  SW A+I+G++   + ++++ LF+ M    P 
Sbjct: 38  NSHLRSLINAGNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPA 97

Query: 101 KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
            +  +  + +   A    + + YG+ +H++ +   L     +GSSL+++Y + G    + 
Sbjct: 98  VSPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSC 157

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           +V + M   +    +A+I+G  + G+                                 E
Sbjct: 158 RVFSEMPFRNAVTWTAIITGLVHAGRYK-------------------------------E 186

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
            L  F +M  +  L D  T A  L AC+ L  +++GKQ+H H    G    V VA++L  
Sbjct: 187 GLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTHVIVRGFDATVWVANSL-- 244

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
                                         T+Y+ CG + D   +F  M  + ++SW S+
Sbjct: 245 -----------------------------ATMYTECGEMRDGLCLFENMSERDVVSWTSL 275

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           IV  ++ G   +A++ F  M    +  ++ + A++ SACA++S L  GEQ+   V  +GL
Sbjct: 276 IVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGL 335

Query: 401 DSDQIISTSLVDFYCKCGY---------------------------------DALALFNE 427
           +    +S S++  Y  CG                                  +A   F+ 
Sbjct: 336 NDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSW 395

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           MR +G KPT     ++LS   +  ++ EG +   A+ + + ++      S +++++++ G
Sbjct: 396 MRQSGPKPTDFALASLLSVSGNMAVL-EGGRQVHALAFCFGLEQNSTVRSTLINMYSKCG 454

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD-PENACAYIQLS 546
            + EA  + E+   + D+   ++++ G   HG       + E+ +++    ++  +I + 
Sbjct: 455 NIKEASKIFEETDRD-DIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVL 513

Query: 547 SIFATSGEWEKSSLIRDIMREKH 569
           +    SG+ +      ++M+EK+
Sbjct: 514 TACTHSGQLDLGFHYFNLMQEKY 536



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 81/380 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +  +C +   +  G+QLH +    G LN +L ++N +++MY  CG    A +LF  M
Sbjct: 307 FATMFSACASLSRLVWGEQLHCNVFSLG-LNDSLSVSNSMMKMYSTCGKLDSASVLFQGM 365

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             R+  SW+ +I G+ + G  E++ + F+ M    P+  DF+   L+S     ++A LE 
Sbjct: 366 RCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLS--VSGNMAVLEG 423

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+H+     GL+ +S + S+L+N+Y KCG+   A+++       D   L+A+I+GYA 
Sbjct: 424 GRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIKEASKIFEETDRDDIVSLTAMINGYAE 483

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            GK                                 EA+ LF K  + G   D+ T  SV
Sbjct: 484 HGK-------------------------------SKEAIDLFEKSLKVGFSPDSVTFISV 512

Query: 244 LSACSSLGFLEHG----------------KQVHGHA----CKVGVI-------------- 269
           L+AC+  G L+ G                K+ +G      C+ G +              
Sbjct: 513 LTACTHSGQLDLGFHYFNLMQEKYNMRPAKEHYGCMVDLLCRAGRLSEAEKMIDEMSWKK 572

Query: 270 DDVIVASALLDTYSK----RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
           DDV+  + L+   +K    RG    A +   EL       L T+  +YSS G +E+A ++
Sbjct: 573 DDVVWTTLLIACKAKGDIERG--RRAAERILELDPTCATALVTLANIYSSTGNLEEAANV 630

Query: 326 FRTMPNKSLIS---WNSMIV 342
            + M  K +I    W+S+ +
Sbjct: 631 RKNMKAKGVIKEPGWSSIKI 650


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 189/680 (27%), Positives = 308/680 (45%), Gaps = 141/680 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEM 67
           AR LQ C        G+ +H H +++G +    L  AN LL MY + G    A  LFD M
Sbjct: 63  ARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRM 122

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P RN  S+  +++   + G  E +  LF  +     + N F    ++      D A L  
Sbjct: 123 PERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 124 GKQIHS-------------------------------HILVNGLDFDSVLGSSLVNLYGK 152
           G  +HS                               H+    +  D+V+ +++V+ Y +
Sbjct: 183 G--VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSE 240

Query: 153 CGDFNSANQVLNMMK----EPDDFCLS--------------------------------- 175
                +A +V + M+    +P+ F L+                                 
Sbjct: 241 NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHV 300

Query: 176 --ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
             AL+  YA CG + DAR  F+       ++ + MIS Y  +N++ +A  LF ++ R+ V
Sbjct: 301 GGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSV 360

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           L +  +L+SVL AC+++  L+ GKQ+H HA K+G   D+ V +AL+D Y+K      + K
Sbjct: 361 LPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLK 420

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +FS L+  + +  NT++                               VG SQ+G   EA
Sbjct: 421 IFSSLRDANEVSWNTIV-------------------------------VGFSQSGLGEEA 449

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L +FC M    +   + + +SV+ ACA+ +S+    Q+   +     ++D +I  SL+D 
Sbjct: 450 LSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDT 509

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           Y KCGY                                 DAL LF+ M  + V+   ITF
Sbjct: 510 YAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITF 569

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
            A+LS C   GLV  G   FD+M+  + I P +EHY+C+V L  RAG LN+A+  I  +P
Sbjct: 570 VALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIP 629

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
                 +W ++L  C+ H +  LGR  AE+++E++P++   Y+ LS+++A +G  ++ +L
Sbjct: 630 SAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVAL 689

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R  MR   V K+PG SW +
Sbjct: 690 LRKSMRNIGVRKVPGLSWVE 709



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 34/251 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +LQ+C     +  GKQ+H H +K G   S L + N L+  Y +C +   +L +F  +
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIG-HESDLFVGNALMDFYAKCNDMDSSLKIFSSL 425

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
              N  SWN ++ GF + G  E++L +F  M         +  S   +  A  A++ +  
Sbjct: 426 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG 485

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH  I  +  + D+V+G+SL++ Y KCG    A +V   + E D    +A+ISGYA  G
Sbjct: 486 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 545

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           +  DA  +FDR                               M ++ V  +  T  ++LS
Sbjct: 546 QAADALELFDR-------------------------------MNKSNVESNDITFVALLS 574

Query: 246 ACSSLGFLEHG 256
            CSS G + HG
Sbjct: 575 VCSSTGLVNHG 585



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 125/276 (45%), Gaps = 15/276 (5%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--DVIVASALLDTYSKRGMPSDACK 293
           D+   A  L  C + G    G+ VHGH  + G +   D+  A+ LL+ Y K G  + A +
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF  +   + +   T++  ++  G  E A  +FR +  +       ++  + +    ++A
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177

Query: 354 LDLFCNMN----KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
             L   ++    KL    + F  + +I A +  S +   E VF  +    +  D ++ T+
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGI----VRKDAVVWTA 233

Query: 410 LVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQ 466
           +V  Y +  C  +A  +F++MR +G KP     T++L A      V  G+     A+K  
Sbjct: 234 MVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTL 293

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
              +P +     ++D++A+ G + +A    E +P++
Sbjct: 294 NDTEPHVG--GALLDMYAKCGDIKDARLAFEMIPYD 327



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 34/292 (11%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T++ Y + +L++C +  SI    Q+H   ++K   N+   I N L+  Y +CG   DAL 
Sbjct: 464 TQVTY-SSVLRACASTASIRHAGQIHCS-IEKSTFNNDTVIGNSLIDTYAKCGYIRDALK 521

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADL 118
           +F  +  R+  SWNA+I G+   G    +L+LF+ M     + ND ++  L+S  +   L
Sbjct: 522 VFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGL 581

Query: 119 AALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSA 176
             + +G  +   + ++ G+       + +V L G+ G  N A Q + ++   P      A
Sbjct: 582 --VNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRA 639

Query: 177 LISG---YANC--GKMNDARRV-FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
           L+S    + N   G+ +  + +  +   +T+ V+ ++M   Y +     +  LL   MR 
Sbjct: 640 LLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNM---YAAAGSLDQVALLRKSMRN 696

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--DVIVASALLD 280
            GV +              L ++E   ++  HA  VG +D  D+ V +A+L+
Sbjct: 697 IGVRK-----------VPGLSWVEIKGEI--HAFSVGSVDHPDMRVINAMLE 735


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 176/607 (28%), Positives = 287/607 (47%), Gaps = 105/607 (17%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           LQ+C     I +G+ +H   LK         ++N L+ MY  CG   DA  +F  M  ++
Sbjct: 258 LQACEGPTFIKIGRGIHAVILKSNHFTDVY-VSNALIAMYANCGQMEDAERVFKSMLFKD 316

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKND--FSWNMLISGFAKADLAALEYGKQ 126
           C SWN ++ G ++      ++  F  M    QK D     NM+ +    A+L A   G +
Sbjct: 317 CVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLA---GME 373

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H++ + +G+D +  +G+SL+++YGKC            M E D      LIS       
Sbjct: 374 VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKD------LIS------- 420

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                             W ++I+GY  N    +AL L  K++   +  D   + S+L A
Sbjct: 421 ------------------WTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLA 462

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS L   +  K++HG+  K G+ D                                 ++ 
Sbjct: 463 CSGLKSEKLIKEIHGYVLKGGLAD--------------------------------ILIQ 490

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N ++ VY     ++ A+H+F ++ +K ++SW SMI     NG  IEAL+LF ++ + ++ 
Sbjct: 491 NAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIE 550

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            D  +L SV+ A A +SSL+ G+++   +   G   + +I+ SLVD Y +CG        
Sbjct: 551 PDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNI 610

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     DA+ LF++M +  V P  ITF A+L AC H GLV
Sbjct: 611 FNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLV 670

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            EG++ F+ MK +Y ++P  EHY+C+VDL AR+  L EA + +  MP E    +W ++L 
Sbjct: 671 VEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLG 730

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  LG   A+++++L+ EN+  Y+ +S+ FA  G W     +R IM+   + K 
Sbjct: 731 ACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKK 790

Query: 574 PGCSWAD 580
           PGCSW +
Sbjct: 791 PGCSWIE 797



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 187/414 (45%), Gaps = 68/414 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           ++ L+ C +H ++  G+QLH HFLK      ++ +  + + MY +CG+  DA+ +FD+M 
Sbjct: 50  SQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMS 109

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYG 124
            R  F+WNAMI   +  G   ++++L+  M       + F++  ++   A         G
Sbjct: 110 ERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLK--ACGAFKERRLG 167

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM-MKEPDDFCLSALISGYAN 183
            +IH   +  G      + ++L+ +Y KCGD   A  + +  + E DD            
Sbjct: 168 CEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDD------------ 215

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                              V WNS+IS ++   E  EAL LF +M+  GV  +  T  S 
Sbjct: 216 ------------------PVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSA 257

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L AC    F++ G+ +H    K     DV V++AL+  Y+  G   DA            
Sbjct: 258 LQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDA------------ 305

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                              + +F++M  K  +SWN+++ G+ QN    +A++ F +M   
Sbjct: 306 -------------------ERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDS 346

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             + D+ S+ ++I+A    ++L  G +V A     G+DS+  I  SL+D Y KC
Sbjct: 347 GQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKC 400



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 132/569 (23%), Positives = 251/569 (44%), Gaps = 114/569 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MP 68
           +L++C       +G ++H   +K G     + + N L+ MY +CG+   A +LFD   M 
Sbjct: 154 VLKACGAFKERRLGCEIHGVAVKCG-YGGFVFVCNALIAMYAKCGDLGGARVLFDSGLME 212

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAA-LEY 123
           + +  SWN++I   +  G   ++L LF  M +     N +++   +S     +    ++ 
Sbjct: 213 KDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTF---VSALQACEGPTFIKI 269

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+ IH+ IL                   K   F             D +  +ALI+ YAN
Sbjct: 270 GRGIHAVIL-------------------KSNHFT------------DVYVSNALIAMYAN 298

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG+M DA RVF        V WN+++SG + N+  ++A+  F  M+ +G   D  ++ ++
Sbjct: 299 CGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNM 358

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           ++A      L  G +VH +A K G+  ++ + ++L+D Y K                   
Sbjct: 359 IAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGK------------------- 399

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       C  ++     F  MP K LISW ++I G +QN   ++AL+L   +   
Sbjct: 400 ------------CCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLE 447

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            + +D   + S++ AC+ + S +L +++   V   GL +D +I  ++V+ Y +       
Sbjct: 448 KMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYA 506

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LFN +  T ++P +IT  ++L A    
Sbjct: 507 RHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAAL 566

Query: 451 GLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
             +K+G++    + +  + ++  I   + +VD++AR G +  A N+   +  + D+ +W+
Sbjct: 567 SSLKKGKEIHGFLIRKGFFLEGLIA--NSLVDMYARCGTMENARNIFNYVK-QRDLILWT 623

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPEN 538
           S++    A+G  G G+   +   ++  EN
Sbjct: 624 SMIN---ANGMHGCGKDAIDLFSKMTDEN 649



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 117/489 (23%), Positives = 198/489 (40%), Gaps = 110/489 (22%)

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           A   AL  G+Q+H+H L      DSV L +  V++YGKC                     
Sbjct: 57  ASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKC--------------------- 95

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
                     G   DA +VFD+ ++ +   WN+MI   +S     EA+ L+ +MR  GV 
Sbjct: 96  ----------GSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVS 145

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            DA T   VL AC +      G ++HG A K G    V V +AL                
Sbjct: 146 LDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNAL---------------- 189

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT--MPNKSLISWNSMIVGLSQNGSPIE 352
                          I +Y+ CG +  A+ +F +  M     +SWNS+I      G  +E
Sbjct: 190 ---------------IAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLE 234

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL LF  M ++ +  + ++  S + AC   + +++G  + A +      +D  +S +L+ 
Sbjct: 235 ALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIA 294

Query: 413 FYCKCGY---------------------------------DALALFNEMRNTGVKPTIIT 439
            Y  CG                                  DA+  F +M+++G KP  ++
Sbjct: 295 MYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVS 354

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
              +++A      +  G +   A   ++ ID  +   + ++D++ +  C+    +  E M
Sbjct: 355 VLNMIAASGRSANLLAGME-VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYM 413

Query: 500 PFEADVGMWSSILRGCVA---HGDK-GLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555
           P E D+  W++I+ G      H D   L RKV    +++DP      + + SI       
Sbjct: 414 P-EKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDP------MMIGSILLACSGL 466

Query: 556 EKSSLIRDI 564
           +   LI++I
Sbjct: 467 KSEKLIKEI 475



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 39/262 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD     +  +L +C+   S  + K++H + LK G+  + + I N ++ +Y        A
Sbjct: 449 MDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL--ADILIQNAIVNVYGELALVDYA 506

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISG-FAKADL 118
             +F+ +  ++  SW +MI   +  G   ++L+LFN + + N +     L+S  +A A L
Sbjct: 507 RHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAAL 566

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           ++L+ GK+IH  ++  G   + ++ +SLV++Y +CG   +A  + N +K+ D    +++I
Sbjct: 567 SSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMI 626

Query: 179 --SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
             +G   CGK                                 +A+ LF KM    VL D
Sbjct: 627 NANGMHGCGK---------------------------------DAIDLFSKMTDENVLPD 653

Query: 237 ASTLASVLSACSSLGFLEHGKQ 258
             T  ++L ACS  G +  GKQ
Sbjct: 654 HITFLALLYACSHSGLVVEGKQ 675


>gi|297830544|ref|XP_002883154.1| hypothetical protein ARALYDRAFT_479395 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328994|gb|EFH59413.1| hypothetical protein ARALYDRAFT_479395 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 614

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 186/611 (30%), Positives = 304/611 (49%), Gaps = 89/611 (14%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           H+  +K G   +T+  +N+L+ +Y + G   +A  +FDEMP RN +SWNA+I  ++K  +
Sbjct: 11  HIRSIKTGSTLTTIS-SNQLVNLYSKNGLLREARNVFDEMPERNVYSWNAVIAAYVKFNN 69

Query: 88  KEKSLQLFNVMPQKNDF-SWNMLISGFAKAD----------------------------- 117
            +++ +LF     + D  ++N L+SGFAK D                             
Sbjct: 70  VKEARELFKRDNCERDLITYNTLLSGFAKTDGCESEAIKMFGEMHRKEKDEIWIDDFSVT 129

Query: 118 --------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN--MMK 167
                   L  + YG+Q+H  ++  G D      SSL+++Y KCG F     V N   ++
Sbjct: 130 TMVKLSAKLTNVFYGEQLHGVMVKTGNDATKFSVSSLIHMYSKCGKFKEVCNVFNGSCVE 189

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFH 226
             D    +A+I+ Y   G ++ A  +F R  +   ++ WN++ISGY  N  + EAL +  
Sbjct: 190 FVDSVARNAMIAAYCREGDIDKALSIFWRNPELNDTISWNTLISGYAQNGYEEEALKIAV 249

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
            M  +G+  D  T A+VL+  SSL  L+ GK+VH    K G   +  V+S ++D Y K G
Sbjct: 250 SMEESGLKWDEHTFAAVLNVLSSLKSLKIGKEVHARLLKNGSYSNKFVSSGIVDVYCKCG 309

Query: 287 ---MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
                  A  L+    +Y T   ++MI  YSS G++ +AK +F ++  K+L+ W +M +G
Sbjct: 310 NMKYAESAHLLYGFGNLYST---SSMIVGYSSQGKMGEAKRLFDSLSEKNLVVWTAMFLG 366

Query: 344 ---LSQNGSPIE-ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
              L Q  S +E A D   N   +    D   + SV+ AC+  + +E G+++       G
Sbjct: 367 YLNLRQPDSVLELARDFIANETNVP---DSLVMVSVLGACSLQAYMEPGKEIHGHSLRTG 423

Query: 400 LDSDQIISTSLVDFYCKCG--------YD-------------------------ALALFN 426
           +  D+ + T+ VD Y KCG        +D                         +  LF 
Sbjct: 424 ILMDKKLVTAFVDMYSKCGNVEYAERIFDISFERDTVMYNTMIAGYAHHGHEAKSFQLFE 483

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +M   G KP  ITF A+LSAC H GLV  G+K+F +M   Y+I PE  HY+CM+DL+ +A
Sbjct: 484 DMTEGGFKPDEITFMALLSACRHRGLVLAGEKYFKSMIEAYNISPEAGHYTCMIDLYGKA 543

Query: 487 GCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545
             L++A+ L+E +   E D  +  + L  C  + +  L ++V E+++ ++  N   YIQL
Sbjct: 544 NRLDKAIELMEGIDQVEKDAVILGAFLNACSWNKNTELVKEVEEKLLAIEGSNGSRYIQL 603

Query: 546 SSIFATSGEWE 556
           ++ +A+SG W+
Sbjct: 604 ANAYASSGRWD 614



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 116/285 (40%), Gaps = 66/285 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT--------- 58
            A +L   ++  S+ +GK++H   LK G  ++   +++ ++ +Y +CGN           
Sbjct: 263 FAAVLNVLSSLKSLKIGKEVHARLLKNGSYSNKF-VSSGIVDVYCKCGNMKYAESAHLLY 321

Query: 59  ----------------------DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
                                 +A  LFD +  +N   W AM  G++ L   +  L+L  
Sbjct: 322 GFGNLYSTSSMIVGYSSQGKMGEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELAR 381

Query: 97  --VMPQKNDFSWNMLISGFAKADLAA-LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
             +  + N     +++S      L A +E GK+IH H L  G+  D  L ++ V++Y KC
Sbjct: 382 DFIANETNVPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKC 441

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           G+   A ++ ++  E D    + +I+GYA+ G                            
Sbjct: 442 GNVEYAERIFDISFERDTVMYNTMIAGYAHHG---------------------------- 473

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
               + ++  LF  M   G   D  T  ++LSAC   G +  G++
Sbjct: 474 ---HEAKSFQLFEDMTEGGFKPDEITFMALLSACRHRGLVLAGEK 515



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C+    +  GK++H H L+ GIL     +    + MY +CGN   A  +FD  
Sbjct: 396 MVSVLGACSLQAYMEPGKEIHGHSLRTGILMDK-KLVTAFVDMYSKCGNVEYAERIFDIS 454

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             R+   +N MI G+   GH+ KS QLF  M +     ++ ++  L+S      L  L  
Sbjct: 455 FERDTVMYNTMIAGYAHHGHEAKSFQLFEDMTEGGFKPDEITFMALLSACRHRGL-VLAG 513

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
            K   S I    +  ++   + +++LYGK    N  ++ + +M+  D     A+I G
Sbjct: 514 EKYFKSMIEAYNISPEAGHYTCMIDLYGKA---NRLDKAIELMEGIDQVEKDAVILG 567


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 182/634 (28%), Positives = 299/634 (47%), Gaps = 111/634 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL+SC+    + +G Q+H   +K G L   +   + L+ MY +C +  DAL  F  M
Sbjct: 152 FAVLLKSCSALEELSLGVQVHALAVKTG-LEIDVRTGSALVDMYGKCRSLDDALCFFYGM 210

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-ADLAALEYGK 125
           P RN  SW + I G ++     + L+LF  M +     S     S F   A ++ L  G+
Sbjct: 211 PERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 270

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H+H + N    D V+G+++V++Y K                             AN  
Sbjct: 271 QLHAHAIKNKFSSDRVVGTAIVDVYAK-----------------------------AN-- 299

Query: 186 KMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
            + DARR F    + T +TS    N+M+ G            LF  M R+ +  D  +L+
Sbjct: 300 SLTDARRAFFGLPNHTVETS----NAMMVG------------LF--MIRSSIRFDVVSLS 341

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVID---------------------DVIVASALLD 280
            V SAC+       G+QVH  A K  V+D                     D +  +A++ 
Sbjct: 342 GVFSACAETKGYFPGQQVHCLAIK-SVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIA 400

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
              + G   D    F+E+  +D  + +T++ +Y  CG I++A+ +   +  + ++SWN++
Sbjct: 401 ALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAI 460

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           + G S N     A   F  M  + L+ D F+ A+V+  CAN++++ELG+Q+  ++    +
Sbjct: 461 LSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEM 520

Query: 401 DSDQIISTSLVDFYCKCG---------------------------------YDALALFNE 427
             D+ IS++LVD Y KCG                                  +AL +F  
Sbjct: 521 LDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFER 580

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M+   V P   TF A+L AC H GL  +G ++F  M   Y ++P++EH++CMVD+  R+ 
Sbjct: 581 MQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSK 640

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
              EAV  I  MPF+AD  +W ++L  C    D  +    A  ++ LDP+++  YI LS+
Sbjct: 641 GPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSN 700

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSWADG 581
           ++A SG+W   S  R ++++  + K PGCSW + 
Sbjct: 701 VYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEA 734



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 201/474 (42%), Gaps = 101/474 (21%)

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            ++V+G    + + + L+ +Y +C     A +V + M   D    + +++ Y++ G ++ 
Sbjct: 42  RMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 101

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A  +FD   D   V WN+++SGY       E++ LF +M R GV  D +T A +L +CS+
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  L  G QVH  A K G+  DV   SAL+D Y K                         
Sbjct: 162 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK------------------------- 196

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                 C  ++DA   F  MP ++ +SW S I G  QN   +  L+LF  M +L L + +
Sbjct: 197 ------CRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQ 250

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNE 427
            S AS   +CA +S L  G Q+ A        SD+++ T++VD Y K     DA   F  
Sbjct: 251 PSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFG 310

Query: 428 MRNTGVKPT-----------------IITFTAILSACD-----------HCGLVK----- 454
           + N  V+ +                 +++ + + SAC            HC  +K     
Sbjct: 311 LPNHTVETSNAMMVGLFMIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDL 370

Query: 455 --------------EGQKWFDAMKWQY---------HIDPEIEHY-----------SCMV 480
                         +G K  D++ W           H D  I H+           S +V
Sbjct: 371 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVV 430

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           D++ + G ++EA  L +++  +  V  W++IL G   + +    +K    M+++
Sbjct: 431 DMYCKCGIIDEAQKLHDRIGGQQVVS-WNAILSGFSLNKESEAAQKFFSEMLDM 483


>gi|297813281|ref|XP_002874524.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297320361|gb|EFH50783.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 688

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 189/614 (30%), Positives = 303/614 (49%), Gaps = 84/614 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     I +G  ++    K+  L   + + N ++ M+++ G  ++A   F E+ R 
Sbjct: 113 VLKACGLVGDIQLGSFVYERIGKEN-LKGDVVLMNSVVDMFVKNGRLSEANSSFKEILRP 171

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KADLAALEYGKQIHS 129
           N  SWN +I G+ K G  E+++ LFN +PQ N  SWN LISGF  K    ALE+  ++  
Sbjct: 172 NSTSWNTLISGYCKAGMVEEAVSLFNRIPQPNIVSWNCLISGFVDKGSPRALEFLVRMQR 231

Query: 130 HILVNGLDFDSVLGSSLVNLYGKC---GDFNSANQ----VLNMMKEPDDFCLSALISGYA 182
             LV  LD     G +L      C   G      Q    V+    E   F LSALI  Y+
Sbjct: 232 EGLV--LD-----GFALPCGLKACSFGGLLTMGKQLHGCVVKSGLESSPFALSALIDMYS 284

Query: 183 NCGKMNDARRVFDRTTDT---SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           NCG ++DA  VF +       +  +WNSM+SG++ N E+  AL L   + ++ +  D+ T
Sbjct: 285 NCGSLSDAADVFHQEKPALCNTVAVWNSMLSGFLINEENEAALGLLLLLYKSDLCFDSYT 344

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L+  L  C +L  L  G QVH      G   D IV S L+D                   
Sbjct: 345 LSGALKICINLVNLRLGLQVHSLVVVSGYELDYIVGSILVD------------------- 385

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                       ++++ G I++A  +F  +PNK +I+++ +I G  ++G    A  LF  
Sbjct: 386 ------------LHANVGNIQEAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRE 433

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           + KL L  D+F ++S++  C++++SL  G+Q+       G  S+ + +T+L D Y KCG 
Sbjct: 434 LIKLGLDADQFIVSSILKVCSSLASLGCGKQIHGLCIKKGYQSEPVTATALGDMYVKCGE 493

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A   F++M N+ ++P  +TF  +LSA
Sbjct: 494 IDNSVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFQYFHKMINSEIEPNEVTFLGLLSA 553

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL++E +   + MK +Y ++P +EHY C+VDL  +AG   EA  LI++MP E D  
Sbjct: 554 CRHSGLLEEARSILETMKCEYGLEPYLEHYYCVVDLLGQAGRFQEAEELIKKMPLEPDKT 613

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W S+L  C  H + GL   +AE++++  PE+   Y  LS+ +AT G W++ S +R+  +
Sbjct: 614 IWMSLLTACGTHKNAGLITVIAEKLLKAFPEDPSLYTSLSNAYATLGMWDQLSEVREAAK 673

Query: 567 EKHVGKLPGCSWAD 580
            K   K  G SW +
Sbjct: 674 -KLGAKESGMSWIE 686



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 164/605 (27%), Positives = 270/605 (44%), Gaps = 75/605 (12%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD ++  +A  L+ C    +   G+ +  H +K+GI  +   +AN ++ MY+     +DA
Sbjct: 3   MDLKL--IAAGLRHCGKIQAFKRGESIQAHIVKQGISQNVF-LANNVISMYVDFRLLSDA 59

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI-SGFAKA--D 117
             +FDEM  RN  +W  M+ G+   G   K+++L+  M +  + + N  I S   KA   
Sbjct: 60  HKVFDEMTERNIVTWTTMVSGYTCDGKPSKAIELYRRMVESQEEAANEFIYSAVLKACGL 119

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           +  ++ G  ++  I    L  D VL +S+V+++ K G  + AN     +  P+    + L
Sbjct: 120 VGDIQLGSFVYERIGKENLKGDVVLMNSVVDMFVKNGRLSEANSSFKEILRPNSTSWNTL 179

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           ISGY   G + +A  +F+R    + V WN +ISG++       AL    +M+R G++ D 
Sbjct: 180 ISGYCKAGMVEEAVSLFNRIPQPNIVSWNCLISGFVDKG-SPRALEFLVRMQREGLVLDG 238

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
             L   L ACS  G L  GKQ+HG   K G+       SAL+D YS  G  SDA  +F +
Sbjct: 239 FALPCGLKACSFGGLLTMGKQLHGCVVKSGLESSPFALSALIDMYSNCGSLSDAADVFHQ 298

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
            K     L NT+                           WNSM+ G   N     AL L 
Sbjct: 299 EK---PALCNTVAV-------------------------WNSMLSGFLINEENEAALGLL 330

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC-- 415
             + K DL  D ++L+  +  C N+ +L LG QV + V + G + D I+ + LVD +   
Sbjct: 331 LLLYKSDLCFDSYTLSGALKICINLVNLRLGLQVHSLVVVSGYELDYIVGSILVDLHANV 390

Query: 416 -----------------------------KCGYDALA--LFNEMRNTGVKPTIITFTAIL 444
                                        K G+++LA  LF E+   G+       ++IL
Sbjct: 391 GNIQEAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSSIL 450

Query: 445 SACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
             C     +  G++     +K  Y  +P     + + D++ + G ++ +V L + M  E 
Sbjct: 451 KVCSSLASLGCGKQIHGLCIKKGYQSEPVTA--TALGDMYVKCGEIDNSVVLFDGM-LER 507

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMI--ELDPENACAYIQLSSIFATSGEWEKSSLI 561
           DV  W+ I+ G   +G      +   +MI  E++P N   ++ L S    SG  E++  I
Sbjct: 508 DVVSWTGIIVGFGQNGRVEEAFQYFHKMINSEIEP-NEVTFLGLLSACRHSGLLEEARSI 566

Query: 562 RDIMR 566
            + M+
Sbjct: 567 LETMK 571


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 283/616 (45%), Gaps = 121/616 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++QSC    S+ +GK +H   + +G       ++  LL MY                   
Sbjct: 227 IIQSCIGLDSLELGKMVHAQIVMRGFATHIF-VSTSLLNMYA------------------ 267

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
                        KLG  E S  +FN+M + N  SWN +ISG     L           H
Sbjct: 268 -------------KLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGL-----------H 303

Query: 131 ILVNGLDFDSVLGSSLVNLY---------GKCGDFNSANQVLNMMKE----PDDFCLSAL 177
           +    L      G+   N+Y         GK  D N   +V N   E     +    +AL
Sbjct: 304 LEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTAL 363

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSV--MWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           I  Y+ CG ++DAR VFD       V   WN+MISGY  +    EAL L+ +M +NG+  
Sbjct: 364 IDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITS 423

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  T  SV +A ++   L+ G+ VHG   K G+  D++V S                   
Sbjct: 424 DLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGL--DLMVVS------------------- 462

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                    + N +   YS CG +ED + +F  M  + ++SW +++   SQ+    EAL 
Sbjct: 463 ---------VNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALA 513

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
            FC M +     ++F+ +SV+ +CA++  LE G QV   +   GLD+++ I ++L+D Y 
Sbjct: 514 TFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYA 573

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                  DAL LF  M  +G+K   +T   
Sbjct: 574 KCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLC 633

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L AC H G+V+EG  +F  M+  Y + PE+EHY+C++DL  R G L++A+  I +MP E
Sbjct: 634 VLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPME 693

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
            +  +W ++L GC  HG+  LG   A +++ + PE +  Y+ LS+ +  +G +E    +R
Sbjct: 694 PNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLR 753

Query: 563 DIMREKHVGKLPGCSW 578
           ++M+++ V K PG SW
Sbjct: 754 NVMKDQGVKKEPGYSW 769



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 164/592 (27%), Positives = 254/592 (42%), Gaps = 108/592 (18%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA-NRLLQMYMRCGNPTDA 60
            T++  L  +L+ C    SI   K +H   LK    +  L +  N    +Y +C     A
Sbjct: 115 QTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAA 174

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFA 114
             +FDEMP+RN FSW  MI G  + G      + F       ++P K  F+++ +I    
Sbjct: 175 CGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDK--FAYSAIIQSCI 232

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
             D  +LE GK +H+ I++ G      + +SL+N+Y K G    +  V NMM E +    
Sbjct: 233 GLD--SLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQ--- 287

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
                                       V WN+MISG  SN    EA  LF +M+     
Sbjct: 288 ----------------------------VSWNAMISGCTSNGLHLEAFDLFVRMKNGACT 319

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  TL SV  A   L  +  GK+V   A ++G+  +V+V +AL+D YSK G   DA   
Sbjct: 320 PNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDA--- 376

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                V+DT  +N        CG            P      WN+MI G SQ+G   EAL
Sbjct: 377 ---RSVFDTNFIN--------CG---------VNTP------WNAMISGYSQSGCSQEAL 410

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDF 413
           +L+  M +  +  D ++  SV +A A   SL+ G  V   V   GLD   + ++ ++ D 
Sbjct: 411 ELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADA 470

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           Y KCG+                                 +ALA F  MR  G  P   TF
Sbjct: 471 YSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTF 530

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           +++L +C     ++ G++    +  +  +D E    S ++D++A+ G + EA  + +++ 
Sbjct: 531 SSVLISCASLCFLEYGRQ-VHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS 589

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
              D+  W++I+ G   HG      ++  RM EL    A A   L  +FA S
Sbjct: 590 -NPDIVSWTAIISGYAQHGLVEDALQLFRRM-ELSGIKANAVTLLCVLFACS 639



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 170/396 (42%), Gaps = 47/396 (11%)

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+ C +   A  VFD     +   W  MI G   +    +    F +M  +G+L D    
Sbjct: 165 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 224

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           ++++ +C  L  LE GK VH      G    + V+++LL+ Y+K G              
Sbjct: 225 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLG-------------- 270

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                             IED+  +F  M   + +SWN+MI G + NG  +EA DLF  M
Sbjct: 271 -----------------SIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM 313

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
                  + ++L SV  A   +  + +G++V    + +G++ + ++ T+L+D Y KCG  
Sbjct: 314 KNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSL 373

Query: 419 YDALALFN-EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
           +DA ++F+    N GV      + A++S     G  +E  + +  M  Q  I  ++  Y 
Sbjct: 374 HDARSVFDTNFINCGVNT---PWNAMISGYSQSGCSQEALELYVQM-CQNGITSDLYTYC 429

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG-----RKVAERMI 532
            + +  A +  L     ++  M  +  + +    +   +A      G     RKV +RM 
Sbjct: 430 SVFNAIAASKSLQFG-RVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRME 488

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           E D     ++  L + ++ S   E++     +MRE+
Sbjct: 489 ERD---IVSWTTLVTAYSQSSLGEEALATFCLMREE 521


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 187/622 (30%), Positives = 289/622 (46%), Gaps = 115/622 (18%)

Query: 11  LLQSCNTH----HSI---------HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP 57
           L+ SC+TH    H++         H GKQLH H +K G  N  L + N++L +Y++C   
Sbjct: 66  LVDSCSTHSFSSHALKISAKLGFLHGGKQLHAHVIKLGXCN-LLSLQNQVLHVYVKCKEF 124

Query: 58  TDALLLFDEMPRRNCFSWNAMI----EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF 113
            D   +FDEMP +N  SWN +I    EG  K          F  M  +      + ++G 
Sbjct: 125 NDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGL 184

Query: 114 AKADLAALEYG--KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
            +A +   + G  +Q+H  IL +G D +  +GS                           
Sbjct: 185 LRASIELNDVGICRQLHCFILKSGFDSNCFVGS--------------------------- 217

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
               AL+  YA  G +++A+  FD  +    V+WN M+S Y  N    +A  +F  MR  
Sbjct: 218 ----ALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLE 273

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           GV  D  T  S++++C  LG    GKQVHG   ++    DV+VASAL+D YSK       
Sbjct: 274 GVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNE----- 328

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
                                      IEDA+  F  M  K+++SW +M VG  Q+G   
Sbjct: 329 --------------------------NIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGK 362

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           E + L   M ++    D+ +LAS++S+C N+S+     QV A V   G ++   I+ +LV
Sbjct: 363 EXMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALV 422

Query: 412 DFYCKCG--------YDALA-------------------------LFNEMRNTGVKPTII 438
             Y KCG        + ++A                         +F ++ ++ V+P  +
Sbjct: 423 SAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKV 482

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
            F  +LSAC H G V EG  +F+ M   Y I P+ EHY+ ++DL  RAG L+EAVNL+  
Sbjct: 483 AFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTS 542

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MP E       + L  C  + + GL R  +E++  ++P     Y  +S+++A+ G W   
Sbjct: 543 MPVEPRSDTLGAFLGACKVYRNVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGHWFDV 602

Query: 559 SLIRDIMREKHVGKLPGCSWAD 580
           + +R +MRE+   K+PGCSW +
Sbjct: 603 ARVRKLMRERCDFKVPGCSWME 624


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 177/613 (28%), Positives = 298/613 (48%), Gaps = 103/613 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            +RLL+   +     +G+Q+H   + KG     + + + L+ MY +C    DA   F E+
Sbjct: 104 FSRLLKGIASVKRFDLGEQVH-GLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEI 162

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-----DLAALE 122
              N  SWNA+I GF+++   + +  L  +M  K   +  M    FA       D     
Sbjct: 163 SEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVT--MDAGTFAPLLTLLDDPMFCN 220

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
             KQ+H+ +L  GL  +  +                                +A+IS YA
Sbjct: 221 LLKQVHAKVLKLGLQHEITI-------------------------------CNAMISSYA 249

Query: 183 NCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           +CG ++DA+RVFD    +  ++ WNSMI+G+  +     A  LF +M+R+ V  D  T  
Sbjct: 250 DCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYT 309

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            +LSACS       GK +HG   K G+       +AL+  Y +   P+            
Sbjct: 310 GLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQ--FPT------------ 355

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                          G +EDA  +F ++ +K LISWNS+I G +Q G   +A+  F  + 
Sbjct: 356 ---------------GTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLR 400

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
             ++++D ++ ++++ +C+++++L+LG+Q+ A  T  G  S++ + +SL+  Y KCG   
Sbjct: 401 SSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIE 460

Query: 419 -----------------YDA--------------LALFNEMRNTGVKPTIITFTAILSAC 447
                            ++A              L LF++M N  VK   +TFTAIL+AC
Sbjct: 461 SARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTAC 520

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GL++EG +  + M+  Y I P +EHY+  VDL  RAG +N+A  LIE MP   D  +
Sbjct: 521 SHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMV 580

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
             + L  C A G+  +  +VA  ++E++PE+   Y+ LS +++   +WE+ + ++ +M+E
Sbjct: 581 LKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKE 640

Query: 568 KHVGKLPGCSWAD 580
           + V K+PG SW +
Sbjct: 641 RGVKKVPGWSWIE 653



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 123/532 (23%), Positives = 224/532 (42%), Gaps = 105/532 (19%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           H + +K G + S + ++NR+L  Y++ G    A +LFDEMP+R+  SWN MI G+   G 
Sbjct: 23  HCYAIKCGSI-SDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81

Query: 88  KEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLG 143
            E +  LF  M +     + +S++ L+ G   A +   + G+Q+H  ++  G + +  +G
Sbjct: 82  LEDAWCLFTCMKRSGSDVDGYSFSRLLKGI--ASVKRFDLGEQVHGLVIKGGYECNVYVG 139

Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
           SSLV++Y KC     A +    + EP+                               SV
Sbjct: 140 SSLVDMYAKCERVEDAFEAFKEISEPN-------------------------------SV 168

Query: 204 MWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
            WN++I+G++   +   A  L   M  +  V  DA T A +L+      F    KQVH  
Sbjct: 169 SWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAK 228

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
             K+G+  ++ + +A++ +Y+  G  SDA ++F  L                        
Sbjct: 229 VLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLG----------------------- 265

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
                   +K LISWNSMI G S++     A +LF  M +  +  D ++   ++SAC+  
Sbjct: 266 -------GSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGE 318

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK-------------------------- 416
                G+ +   V   GL+     + +L+  Y +                          
Sbjct: 319 EHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNS 378

Query: 417 --CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
              G+       DA+  F+ +R++ +K     F+A+L +C     ++ GQ+         
Sbjct: 379 IITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSG 438

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            +  E    S ++ ++++ G +  A    +Q+  +     W++++ G   HG
Sbjct: 439 FVSNEFV-ISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHG 489



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 157/334 (47%), Gaps = 43/334 (12%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR--CGNPT 58
           ++T I     LL +C+       GK LH   +KKG L       N L+ MY++   G   
Sbjct: 301 VETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKG-LEQVTSATNALISMYIQFPTGTME 359

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFA 114
           DAL LF+ +  ++  SWN++I GF + G  E +++ F+ +       +D++++ L+   +
Sbjct: 360 DALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLR--S 417

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            +DLA L+ G+QIH+    +G   +  + SSL+ +Y KCG   S                
Sbjct: 418 CSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIES---------------- 461

Query: 175 SALISGYANCGKMNDARRVFDR-TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                          AR+ F + ++  S+V WN+MI GY  +     +L LF +M    V
Sbjct: 462 ---------------ARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNV 506

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV-ASALLDTYSKRGMPSDAC 292
             D  T  ++L+ACS  G ++ G ++      V  I   +   +A +D   + G+ + A 
Sbjct: 507 KLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAK 566

Query: 293 KLFSELKVY-DTILLNTMITVYSSCGRIEDAKHI 325
           +L   + +  D ++L T + V  +CG IE A  +
Sbjct: 567 ELIESMPLNPDPMVLKTFLGVCRACGEIEMATQV 600



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 37/190 (19%)

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
            H +A K G I D+ V++ +LD+Y K G    A  LF E+   D++  NTMI+ Y+SCG+
Sbjct: 22  THCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +EDA  +F  M                ++GS +                D +S + ++  
Sbjct: 82  LEDAWCLFTCMK---------------RSGSDV----------------DGYSFSRLLKG 110

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPT 436
            A++   +LGEQV   V   G + +  + +SLVD Y KC    DA   F E+     +P 
Sbjct: 111 IASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEIS----EPN 166

Query: 437 IITFTAILSA 446
            +++ A+++ 
Sbjct: 167 SVSWNALIAG 176


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 178/560 (31%), Positives = 269/560 (48%), Gaps = 117/560 (20%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALE 122
           + + +SWN++I  F + G   ++L  F+ M      P ++ F    + S  +  DL A  
Sbjct: 48  KTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCT-IKSCSSLYDLCA-- 104

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            GKQIH    V G              YG                  D F  SALI  Y+
Sbjct: 105 -GKQIHQQAFVFG--------------YG-----------------SDIFVASALIDMYS 132

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-----------MRRN 231
            CG +NDAR++FD   + + V W SMISGY+ N    EA+ LF +           +   
Sbjct: 133 KCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGV 192

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           GV  D+  L  V+SAC+ +      + VHG A K G    + V + L+D Y+K       
Sbjct: 193 GVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAK------- 245

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
                                   CG I  ++ +F  M    + SWNS+I   +QNG  +
Sbjct: 246 ------------------------CGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSV 281

Query: 352 EALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
           EA  LF +M K  ++R +  +L++V+ ACA+  +L++G+ +  +V  + L+ + ++ TS+
Sbjct: 282 EAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSI 341

Query: 411 VDFYCKCGY---------------------------------DALALFNEMRNTGVKPTI 437
           VD YCKCG                                  +A+ +F EM   G+KP  
Sbjct: 342 VDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNY 401

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           ITF ++L+AC H GL+KEG  WF+ MK ++ ++P IEHYSCMVDL  RAG L EA  LI+
Sbjct: 402 ITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQ 461

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
           +M  + D  +W S+L  C  H +  LG   A ++ +LDP N   Y+ LS+I+A +G W+ 
Sbjct: 462 EMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDD 521

Query: 558 SSLIRDIMREKHVGKLPGCS 577
              +R +M+   + K PG S
Sbjct: 522 VERMRILMKNHGLLKTPGYS 541



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 230/497 (46%), Gaps = 93/497 (18%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           ++SC++ + +  GKQ+H      G   S + +A+ L+ MY +CG   DA  LFDE+P RN
Sbjct: 93  IKSCSSLYDLCAGKQIHQQAFVFG-YGSDIFVASALIDMYSKCGYLNDARKLFDEIPERN 151

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFN--VMPQKNDFS-------------WNMLISGFAKA 116
             SW +MI G+++     +++ LF   ++  + D+                 +IS  A+ 
Sbjct: 152 VVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARV 211

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            + ++   + +H   +  G +    +G++L++ Y KCG+ + + +V + M+E        
Sbjct: 212 CVKSVT--ECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEE-------- 261

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLE 235
                                TD  S  WNS+I+ Y  N    EA  LF  M +R  V  
Sbjct: 262 ---------------------TDVCS--WNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRY 298

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           +A TL++VL AC+  G L+ GK +H    K+ + D+++V ++++D Y K           
Sbjct: 299 NAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCK----------- 347

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                               CGR+E A+  F  +  K++ SW  M+ G   +G   EA+ 
Sbjct: 348 --------------------CGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMK 387

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS--TSLVDF 413
           +F  M +  ++ +  +  SV++AC++   L+ G   F ++     D +  I   + +VD 
Sbjct: 388 VFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMK-CEFDVEPGIEHYSCMVDL 446

Query: 414 YCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
             + GY  +A  L  EM+   VKP  I + ++L AC     V+ G+    A K  + +DP
Sbjct: 447 LGRAGYLKEAYGLIQEMK---VKPDFIVWGSLLGACRIHKNVELGE--ISARKL-FKLDP 500

Query: 472 E-IEHYSCMVDLFARAG 487
               +Y  + +++A AG
Sbjct: 501 SNCGYYVLLSNIYADAG 517



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 172/409 (42%), Gaps = 85/409 (20%)

Query: 191 RRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           R +F +  D +SV  WNS+I+ +  + +  +AL  F  MR+  +  + ST    + +CSS
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  L  GKQ+H  A   G   D+ VASAL+D YSK G  +DA KLF E+           
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEI----------- 147

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD----- 364
                               P ++++SW SMI G  QN    EA+ LF     +D     
Sbjct: 148 --------------------PERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYD 187

Query: 365 ------LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
                 + +D   L  VISACA +    + E V       G +    +  +L+D Y KCG
Sbjct: 188 EIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCG 247

Query: 419 ---------------------------------YDALALFNEMRNTG-VKPTIITFTAIL 444
                                             +A +LF++M   G V+   +T +A+L
Sbjct: 248 EISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVL 307

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
            AC H G ++ G+   D +  +  ++  +   + +VD++ + G +  A    +++    +
Sbjct: 308 LACAHSGALQIGKCIHDQVV-KMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLK-RKN 365

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFAT 551
           V  W+ ++ G   HG      KV   MI   + P     YI   S+ A 
Sbjct: 366 VKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPN----YITFVSVLAA 410


>gi|242093006|ref|XP_002436993.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
 gi|241915216|gb|EER88360.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
          Length = 698

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 184/625 (29%), Positives = 292/625 (46%), Gaps = 106/625 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L+  C+    +  G Q+H    K G+ +    +A  L+ MY +CG    +   F   
Sbjct: 135 LGALVAGCSRARHVDAGVQVHACVAKFGV-DEDESVAAALVDMYAKCGWVDSSWRAFTLA 193

Query: 68  PRRNCFSWNAMIEGFMKLG---HKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAA 120
           P+R+  SW +MI   +  G   + + ++ LF  M        + +++ ++  F   DL  
Sbjct: 194 PQRSVLSWTSMIACLVNQGSSGYHDAAMLLFKKMLALKVWPTNVTFSCILKVFNTPDL-- 251

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L  G QIH  +L  G + D+ LGS+L+ +YG+CG  +   ++                  
Sbjct: 252 LSVGMQIHGCLLKIGTEVDTALGSALMTMYGRCGGVDEIARL------------------ 293

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
              C   +D   VF RT         S++  Y  N  + EA+ +F +M    +  D S +
Sbjct: 294 --ACRIRHD---VFSRT---------SLLGAYARNGYNAEAIGVFKEMILTNMAIDQSAM 339

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
             +L  CSS+G L   ++VH +A               L T+ K                
Sbjct: 340 TCLLQVCSSVGQLRMVREVHCYA---------------LKTFFK---------------- 368

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            DT+LLN +ITVY  CG    A+ +F  M  + +ISW +++   +QNG   E L  F  M
Sbjct: 369 LDTLLLNAIITVYGRCGDTTSAETVFNLMEEQDIISWTALLTCYAQNGLDEEVLLFFREM 428

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            +  L    F + SV+ AC+  S+L +G Q+ +R   +G+D D  +  +LV  Y  CG  
Sbjct: 429 LRRGLGSPVFCMTSVLRACSRTSNLAIGLQIHSRTVKLGIDDDNSVENALVTLYANCGSV 488

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                            A+ LF+ M+   V P   TF  +LS+C
Sbjct: 489 QVALKIFNSMSNRDIVTWNALLTSFSQHGNEVAAIQLFDLMQEEEVCPDDYTFVGLLSSC 548

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              GLVKEG ++F+ MK +Y+++P++ HY+CMVDLFARAG   +A++ I+ MP+E D  +
Sbjct: 549 SRMGLVKEGCEYFNEMKAKYNLEPKMVHYTCMVDLFARAGRFCDAMDFIDAMPYEPDQIL 608

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L  C  HG+ GLGR  A++++E+ P +  AYI LSSI A+   W++    R +   
Sbjct: 609 WEALLASCKIHGNLGLGRIAAKKILEITPHDYSAYITLSSIHASVDMWDEKCWNRTVFDT 668

Query: 568 KHVGKLPGCSWADGIAFNCWFLDTM 592
           +   K  G SW D    +   LDT+
Sbjct: 669 QQARKDTGRSWIDAQELSENILDTL 693



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 112/284 (39%), Gaps = 77/284 (27%)

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
           H    HG A K+G I    + + LL  Y  R +P+ A                       
Sbjct: 44  HPHSAHGVAIKLGCIASTFLCNNLLHAYLSRSVPAHA----------------------- 80

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM------NKLDLRMD 368
                   + +F  M  ++L+SW+ +I G +++G   EA  LF +M         D R D
Sbjct: 81  --------RRLFDEMSRRNLVSWSVVISGSARHGVLAEAFALFSHMLHGAGQGSWD-RPD 131

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------- 419
            F L ++++ C+    ++ G QV A V   G+D D+ ++ +LVD Y KCG+         
Sbjct: 132 SFMLGALVAGCSRARHVDAGVQVHACVAKFGVDEDESVAAALVDMYAKCGWVDSSWRAFT 191

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       A+ LF +M    V PT +TF+ IL   +   L
Sbjct: 192 LAPQRSVLSWTSMIACLVNQGSSGYHDAAMLLFKKMLALKVWPTNVTFSCILKVFNTPDL 251

Query: 453 VKEGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
           +  G +     +K    +D  +   S ++ ++ R G ++E   L
Sbjct: 252 LSVGMQIHGCLLKIGTEVDTALG--SALMTMYGRCGGVDEIARL 293


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 165/548 (30%), Positives = 282/548 (51%), Gaps = 61/548 (11%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122
           + + +   N FSWNA+I G ++  + +K L L+            ML     + D     
Sbjct: 109 ILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYK----------RMLTRAGCRPDNYTYS 158

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           +  ++ ++++++ + F+ +LG                 QVL M  + D +  + +I    
Sbjct: 159 FLFKVCANLVLSYMGFE-ILG-----------------QVLKMGFDKDMYLYNGIIHMLV 200

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           + G+   A +VFD       V WNS+I+GY+   +  EA+ ++ +M    V  D  T+  
Sbjct: 201 SVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIG 260

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           V+SAC+ L  L+ G+++H +  + G+   + + +AL+D Y K G       LF  ++   
Sbjct: 261 VVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKT 320

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            +   TMI  Y+  G ++ A  +F  MP K++++WN+MI    Q     EAL+LF  M  
Sbjct: 321 VVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQW 380

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YD 420
            +++ DK ++   +SAC+ + +L+ G      +    L  D  + T+L+D Y KCG    
Sbjct: 381 SNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTK 440

Query: 421 ALALFNEM--RNT-----------------------------GVKPTIITFTAILSACDH 449
           AL +FNEM  RN+                             G+ P  ITF  +L+AC H
Sbjct: 441 ALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCH 500

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV+EG+K+FD MK ++++ P+ +HYSCMV+L  RAG L EA  LI+ MP EAD  +W 
Sbjct: 501 GGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWG 560

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           ++   C  H +  +G + A ++++LDP ++  Y+ L++++  +G+WE++  IR +M E+ 
Sbjct: 561 ALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERG 620

Query: 570 VGKLPGCS 577
           V K PG S
Sbjct: 621 VEKTPGSS 628


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 186/614 (30%), Positives = 297/614 (48%), Gaps = 80/614 (13%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYM------RCGNPTDA 60
           ++  LL+ C    SI    Q+H H +  G  + +  +A++L+  Y       R G    A
Sbjct: 12  HVLELLRQCR---SIQHLDQIHAHLVVHGFSDVS-SVASQLIASYCTLSAGDRDGGLCHA 67

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA 116
             LFD +P  + F +N ++  +      +++L+L   + Q+    N+F+   ++   A  
Sbjct: 68  RRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLK--ACT 125

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            + A+E+   + +H +V  L F                      Q+         F  +A
Sbjct: 126 TVRAVEHA--LAAHGVVVKLGF--------------------VQQI---------FVANA 154

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+  +A+ G + D+RR F    D + V WN+MI GY    E +EA  LF +MR  G+L D
Sbjct: 155 LLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLAD 214

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             TL S+L ACSS G LE G+ VH H    G   D I+ +ALLD Y K G    A + F 
Sbjct: 215 VFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFD 274

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            + + + +   +M+   +  G ++  +  F  MP ++++SWN+MI    Q G   E LDL
Sbjct: 275 MMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDL 334

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           +  M  L +  D+F+LA V+SAC     L  G+ +   V     D    +  SL+D Y +
Sbjct: 335 YNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYAR 394

Query: 417 CGY--DALALFNEMRNTGV-------------------------------KPTIITFTAI 443
           CG    A+ LF EM N  V                                P  ITF  +
Sbjct: 395 CGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGL 454

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC H GL++ G+ +F+AM   Y+++PE+EHY CMVDL  R G L +AVNLI+ M  + 
Sbjct: 455 LSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKP 514

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           DV +W ++L  C  HG+  +G+ V ++++EL+      ++ + ++F  + +WE    +R 
Sbjct: 515 DVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDMKKLRK 574

Query: 564 IMREKHVGKLPGCS 577
           +M+E+   K  G S
Sbjct: 575 LMKEQGTKKDMGVS 588



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 151/362 (41%), Gaps = 51/362 (14%)

Query: 233 VLEDASTLAS-----VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY----- 282
           +L  A+ +AS     +L  C S+   +H  Q+H H    G  D   VAS L+ +Y     
Sbjct: 1   MLAPAAVVASRHVLELLRQCRSI---QHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSA 57

Query: 283 -SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
             + G    A +LF  +   D  + NT++  YS+    ++A  + R +  + ++     +
Sbjct: 58  GDRDGGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTL 117

Query: 342 VGLSQNGSPIEALDLFCNMN----KLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
             + +  + + A++     +    KL      F   +++   A+  SL    + F  +  
Sbjct: 118 PFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMA- 176

Query: 398 IGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACD------- 448
              D + +   +++  Y + G   +A ALF EMR+ G+   + T  ++L AC        
Sbjct: 177 ---DRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEV 233

Query: 449 ----HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
               HC ++  G +          +D  +   + ++D++ + G L  A    + MP + +
Sbjct: 234 GRLVHCHMLVSGSR----------VDRILG--NALLDMYGKCGDLWMAHRCFDMMPIK-N 280

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
           V  W+S+L     HG     R   E+M E    N  ++  + S +   G   ++  + + 
Sbjct: 281 VVTWTSMLCAQAKHGSVDAVRDWFEQMPE---RNIVSWNAMISCYVQCGRLHETLDLYNR 337

Query: 565 MR 566
           MR
Sbjct: 338 MR 339


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 173/532 (32%), Positives = 263/532 (49%), Gaps = 76/532 (14%)

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKA----DLAALEYGKQIHSHILVNGLDFDSVLGS-- 144
           SL   ++ P  ND+++N++I           LA   + + +   +  +   F     S  
Sbjct: 74  SLLFSHIAPHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCA 133

Query: 145 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 204
           +L +L   C    + + +  +    D     +LI+ YA CG +  AR+VFD      SV 
Sbjct: 134 NLASLSHACA---AHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVS 190

Query: 205 WNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
           WNSMI+GY       EA+ +F +M RR+G   D  +L S+L AC  LG LE G+ V G  
Sbjct: 191 WNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFV 250

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
            + G+  +  + SAL                               I++Y+ CG +E A+
Sbjct: 251 VERGMTLNSYIGSAL-------------------------------ISMYAKCGELESAR 279

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
            IF  M  + +I+WN++I G +QNG   EA+ LF  M +  +  +K +L +V+SACA I 
Sbjct: 280 RIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIG 339

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------- 418
           +L+LG+Q+    +  G   D  ++T+L+D Y K G                         
Sbjct: 340 ALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMIS 399

Query: 419 --------YDALALFNEMRNTG--VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
                    +AL+LF  M + G   +P  ITF  +LSAC H GLV EG + FD M   + 
Sbjct: 400 ALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFG 459

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
           + P+IEHYSCMVDL ARAG L EA +LI +MP + D     ++L  C +  +  +G +V 
Sbjct: 460 LVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVM 519

Query: 529 ERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             ++E+DP N+  YI  S I+A    WE S+ +R +MR+K + K PGCSW +
Sbjct: 520 RMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIE 571



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 222/470 (47%), Gaps = 83/470 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L  +C  H             L K  L+S    A+ L+  Y RCG    A  +FDE+
Sbjct: 135 LASLSHACAAHS-----------LLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEI 183

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISGF-AKADLAALEYG 124
           P R+  SWN+MI G+ K G   +++++F  M +++ F  +   L+S   A  +L  LE G
Sbjct: 184 PHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELG 243

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           + +   ++  G+  +S +GS+L+++Y KCG+  SA ++ + M   D    +A+ISGYA  
Sbjct: 244 RWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQN 303

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G M D                              EA+LLFH M+ + V  +  TL +VL
Sbjct: 304 G-MAD------------------------------EAILLFHGMKEDCVTANKITLTAVL 332

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SAC+++G L+ GKQ+  +A + G   D+ VA+AL+D Y+K G   +A ++F ++   +  
Sbjct: 333 SACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEA 392

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N MI+  ++ G+ ++A  +F+ M ++               G+               
Sbjct: 393 SWNAMISALAAHGKAKEALSLFQHMSDEG-------------GGA--------------- 424

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG--YDA 421
            R +  +   ++SAC +   ++ G ++F  + T+ GL       + +VD   + G  Y+A
Sbjct: 425 -RPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEA 483

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
             L  +M     KP  +T  A+L AC     V  G++    M+    +DP
Sbjct: 484 WDLIRKMPE---KPDKVTLGALLGACRSKKNVDIGER---VMRMILEVDP 527


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 179/614 (29%), Positives = 287/614 (46%), Gaps = 100/614 (16%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           DT +D   +  +L++C    S  +G+++H   +K G       + N L+ MY   G+   
Sbjct: 119 DTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVF-VCNALIMMYSEVGSLAL 177

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF---NVMPQKNDFSWNMLISGFAKA 116
           A LLFD++  ++  SW+ MI  + + G  +++L L    +VM  K      M+      A
Sbjct: 178 ARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPS-EIGMISITHVLA 236

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           +LA L+ GK +H++++ NG                KCG            K     C +A
Sbjct: 237 ELADLKLGKAMHAYVMRNG----------------KCG------------KSGVPLC-TA 267

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LI  Y  C  +  ARRVFD  +  S + W +MI+ YI  N   E + LF KM   G+  +
Sbjct: 268 LIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPN 327

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             T+ S++  C + G LE GK +H    + G    +++A+A +D Y K            
Sbjct: 328 EITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGK------------ 375

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                              CG +  A+ +F +  +K L+ W++MI   +QN    EA D+
Sbjct: 376 -------------------CGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDI 416

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F +M    +R ++ ++ S++  CA   SLE+G+ + + +   G+  D I+ TS VD Y  
Sbjct: 417 FVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYAN 476

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                   AL LF EM   GV P  ITF   
Sbjct: 477 CGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGA 536

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L AC H GL++EG++ F  M  ++   P++EHY CMVDL  RAG L+EA  LI+ MP   
Sbjct: 537 LHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRP 596

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           ++ ++ S L  C  H +  LG   A++ + L+P  +   + +S+I+A++  W   + IR 
Sbjct: 597 NIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRR 656

Query: 564 IMREKHVGKLPGCS 577
            M+++ + K PG S
Sbjct: 657 AMKDEGIVKEPGVS 670



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 119/258 (46%), Gaps = 35/258 (13%)

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           +I+ YI NN   +A  ++  MR      D   + SVL AC  +     G++VHG   K G
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
              DV V +AL+  YS+ G  + A  LF +++  D +  +TMI  Y   G ++       
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLD------- 207

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
                                   EALDL  +M+ + ++  +  + S+    A ++ L+L
Sbjct: 208 ------------------------EALDLLRDMHVMRVKPSEIGMISITHVLAELADLKL 243

Query: 388 GEQVFARVTIIGL--DSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILS 445
           G+ + A V   G    S   + T+L+D Y KC  + LA    + +   K +II++TA+++
Sbjct: 244 GKAMHAYVMRNGKCGKSGVPLCTALIDMYVKC--ENLAYARRVFDGLSKASIISWTAMIA 301

Query: 446 ACDHCGLVKEGQKWFDAM 463
           A  HC  + EG + F  M
Sbjct: 302 AYIHCNNLNEGVRLFVKM 319


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 170/593 (28%), Positives = 283/593 (47%), Gaps = 97/593 (16%)

Query: 46  RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----K 101
           + L   ++ G   DAL LFD MPR+N  +W +++ G  + G  E +L +F  M +     
Sbjct: 53  KRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAP 112

Query: 102 NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
           NDF+ N  +   A ADL AL  G+Q+HS  +  G   D+ +GS L+ +Y +         
Sbjct: 113 NDFACNAAL--VACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSR--------- 161

Query: 162 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221
                                 CG +  A+ VFDR      V + S+IS +  N E   A
Sbjct: 162 ----------------------CGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELA 199

Query: 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVAS-ALL 279
                +M + G+  +  T+ ++L+AC  +     G+Q+HG+  K +G+    + +S AL+
Sbjct: 200 AEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALI 255

Query: 280 DTYSK-RGMPSDA--------------------CKLFSELKVYDTILLNTMITVYSSCGR 318
           D YS+  G+  +                     C       + D  + N ++++Y   G 
Sbjct: 256 DFYSRNEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGL 315

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +E+ + +   + N  L+SW + I    QNG   +A+ L C M+      + ++ +SV+S+
Sbjct: 316 VEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSS 375

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------- 419
           CA+++SL+ G Q       +G DS+     +L++ Y KCG                    
Sbjct: 376 CADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSW 435

Query: 420 --------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                          AL +F++MR+ G+KP   TF  +L  C+H G+V+EG+ +F  M  
Sbjct: 436 NSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMID 495

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
           QY   P   HY+CM+D+  R G  +EA+ +I  MPFE D  +W ++L  C  H +  +G+
Sbjct: 496 QYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGK 555

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
             A+R++EL   ++ +Y+ +S+I+A  GEWE +  +R  M E  V K  GCSW
Sbjct: 556 LAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSW 608



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 199/472 (42%), Gaps = 83/472 (17%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++  G+Q+H   ++ G       I + L++MY RCG+   A  +FD M   +
Sbjct: 121 LVACADLGALRAGEQVHSLAVRAGFAGDAW-IGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 72  CFSWNAMIEGFMKLGH----KEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
              + ++I  F + G      E  +Q+     + N+ +   +++   +        G+QI
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV------LGQQI 233

Query: 128 HSHILVN-GLDFDSVLGSS-LVNLY-----------------GKCGDFNSANQVLNMMKE 168
           H +++   GL   SV  S+ L++ Y                 G CG      Q+     +
Sbjct: 234 HGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSIGLGRQLHCSAIK 293

Query: 169 PD---DFCLS-ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
            D   D  +S AL+S Y   G + +   + ++  +   V W + IS    N    +A+ L
Sbjct: 294 HDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIAL 353

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
             +M   G   +    +SVLS+C+ +  L+ G Q H  A K+G   ++   +AL++ YSK
Sbjct: 354 LCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSK 413

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
                                          CG++  A+  F  M    + SWNS+I G 
Sbjct: 414 -------------------------------CGQMGSARLAFDVMHTHDVTSWNSLIHGH 442

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
           +Q+G   +AL++F  M    ++ D  +   V+  C +   +E GE +F R+ I     DQ
Sbjct: 443 AQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGE-LFFRLMI-----DQ 496

Query: 405 IISTS-------LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSAC 447
              T        ++D   + G   +AL + N+M     +P  + +  +L++C
Sbjct: 497 YSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP---FEPDALIWKTLLASC 545



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 14/240 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L SC    S+  G Q H   LK G  +S +   N L+ MY +CG    A L FD M
Sbjct: 369 FSSVLSSCADVASLDQGMQFHCLALKLGC-DSEICTGNALINMYSKCGQMGSARLAFDVM 427

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
              +  SWN++I G  + G   K+L++F+ M     + +D ++  ++ G   + +  +E 
Sbjct: 428 HTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGM--VEE 485

Query: 124 GKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
           G ++   ++++   F       + ++++ G+ G F+ A +++N M  EPD      L++ 
Sbjct: 486 G-ELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLAS 544

Query: 181 YANCGKMNDARRVFDR---TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                 ++  +   DR    +D  S  +  M + Y  + E  +A  +  +M   GV +DA
Sbjct: 545 CKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDA 604


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 186/629 (29%), Positives = 306/629 (48%), Gaps = 70/629 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNST--LP-IANRLLQMYMRCGNPTDALLLFDEM 67
             Q C T   +   +QLH     + +L +   LP +A RL+ +Y R    + A  +FD +
Sbjct: 37  FFQRCFT---LQQARQLH----SQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDAI 89

Query: 68  PRRNCFS---WNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAA 120
           P  +      WN++I   +  G+ + +L+L+  M +     + F+  ++I   A + L +
Sbjct: 90  PLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIR--ACSSLGS 147

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
               + +H H L  G      + + LV +YGK G    A Q+ + M        + ++SG
Sbjct: 148 SYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSG 207

Query: 181 YANCGKMNDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           YA       A RVF R        +SV W S++S +       E L LF  MR  G+   
Sbjct: 208 YALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIG 267

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           A  LA VLS C+ +  ++ GK++HG+  K G  D + V +AL+ TY K     DA K+F 
Sbjct: 268 AEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFL 327

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------------PNKSLISWNSMIVGL 344
           E+K  + +  N +I+ Y+  G  ++A   F  M            PN  +ISW+++I G 
Sbjct: 328 EIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPN--VISWSAVISGF 385

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
           +  G   ++L+LF  M    +  +  +++SV+S CA +++L LG ++        +  + 
Sbjct: 386 AYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNI 445

Query: 405 IISTSLVDFYCKCG---------------------------------YDALALFNEMRNT 431
           ++   L++ Y KCG                                  +AL  FNEM   
Sbjct: 446 LVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRA 505

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
            +KP  ITF AILSAC H GLV  G+  FD M  ++ I+P +EHY+CMVDL  RAG L E
Sbjct: 506 RMKPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKE 565

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551
           A +++  MP E +  +W ++L  C  + D  +  + A +++ L  +   +++ LS+I+A 
Sbjct: 566 ATDIVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAA 625

Query: 552 SGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +G W+ S+ +R   R K + K+PG SW +
Sbjct: 626 NGRWDDSARVRVSARTKGLKKIPGQSWIE 654



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 221/488 (45%), Gaps = 81/488 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++++C++  S ++ + +H H L+ G  N  L + N L+ MY + G   DA  LFD M
Sbjct: 135 LPLVIRACSSLGSSYLCRIVHCHALQMGFRNH-LHVVNELVGMYGKLGRMEDARQLFDGM 193

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK-------- 115
             R+  SWN M+ G+        + ++F  M     Q N  +W  L+S  A+        
Sbjct: 194 FVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETL 253

Query: 116 -------------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
                                    AD+A +++GK+IH +++  G +    + ++L+  Y
Sbjct: 254 ELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTY 313

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-------- 202
           GK      A++V   +K  +    +ALIS YA  G  ++A   F     + S        
Sbjct: 314 GKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRP 373

Query: 203 --VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             + W+++ISG+       ++L LF +M+   V+ +  T++SVLS C+ L  L  G+++H
Sbjct: 374 NVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELH 433

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G+A +  + D+++V + L++ Y K                               CG  +
Sbjct: 434 GYAIRNMMSDNILVGNGLINMYMK-------------------------------CGDFK 462

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
           +   +F  +  + LISWNS+I G   +G    AL  F  M +  ++ D  +  +++SAC+
Sbjct: 463 EGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACS 522

Query: 381 NISSLELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIIT 439
           +   +  G  +F + VT   ++ +      +VD   + G    A  + +RN  ++P    
Sbjct: 523 HAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEAT-DIVRNMPIEPNEYV 581

Query: 440 FTAILSAC 447
           + A+L++C
Sbjct: 582 WGALLNSC 589


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 167/591 (28%), Positives = 276/591 (46%), Gaps = 102/591 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C     +  GK++H H +K G   +   + N L+QMY +CG+  DA  +FD M RR
Sbjct: 76  LLRDCG---ELAAGKKIHEHVVKNGYYENVY-VGNHLVQMYSKCGSLEDAKKVFDGMRRR 131

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-FSWNMLISGFAKADLAALEYGKQIHS 129
           +  SW+ MI G+++ G   ++++L+  M    D F+++ +++  +     ALE GK+IH+
Sbjct: 132 DSISWSKMIAGYVRHGLAREAIKLYKAMAIDPDGFTFSAVLNACSSLGPRALEVGKEIHA 191

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
           H+                                 +  +PD F  SAL++ +A CG + +
Sbjct: 192 HMK-------------------------------RIWLKPDVFVDSALVTMFAKCGSLKE 220

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG--VLEDASTLASVLSAC 247
           +R VFD       + WNSMI  Y  +    EA+ LF  M  +   V  +A T  +VL+AC
Sbjct: 221 SREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAAC 280

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           S++  LE GK+VH      G                                 +D    N
Sbjct: 281 SAVEDLEQGKEVHRQMVDAGF-------------------------------QFDAAAEN 309

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           +++ +Y+ CG I +A+ +F  M  ++++SW  +I    + G P EALDL+  M    +  
Sbjct: 310 SLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEP 369

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
           +  + ASV+SAC+++ +LE G+ V A++   G   D  ++ +LV  Y KCG         
Sbjct: 370 NGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVF 429

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                    +A+ L+  M   GV+ +   +  +L+AC   GL++
Sbjct: 430 DRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLE 489

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
             + +F  +        ++E Y CM  +  RAG L EA  L+  MPFEA+   W  +L  
Sbjct: 490 SARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAWMGLLAA 549

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
           C AH D   G +VAE +  L+P N   Y+ LS+I+  +G  E+++ +R  M
Sbjct: 550 CKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAAGRQEEAARVRRKM 600


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 190/682 (27%), Positives = 319/682 (46%), Gaps = 143/682 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +  +   ++ G  +H    K+G L+  + + + L+ MY +C     A  +F+ +
Sbjct: 312 LGSVLSAIASLSMLNYGSMVHAQATKEG-LDDNVYVGSALVNMYAKCSKMDAAKQVFNSL 370

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             RN   WNAM+ GF + G  ++ ++ F+ M    PQ ++F++  + S  A A L  L +
Sbjct: 371 GERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFS--ACASLHYLNF 428

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+H+ ++ N   F S L                             F  +AL+  YA 
Sbjct: 429 GGQLHTVMIKN--KFASNL-----------------------------FVANALVDMYAK 457

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G + +AR+ F+      +V WN++I GY+    + EA  +F +M  NGVL D  +LAS+
Sbjct: 458 SGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASI 517

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----------MPS--- 289
           +SAC+++  L+ G+Q H    KVG+       S+L+D Y K G           MPS   
Sbjct: 518 VSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNV 577

Query: 290 ----------------DACKLFSELKVYD-----------------TILLN--------- 307
                           +A  LF E+++                     +LN         
Sbjct: 578 VSVNALIAGYTMGHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQV 637

Query: 308 --------------TMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIE 352
                         +++ +Y +  R  D++ +F  +   K L+ W ++I G +Q     +
Sbjct: 638 MKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEK 697

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL  + +M   ++  D+ + ASV+ ACA +SSL+ G+++ + +   G + D++  +SL+D
Sbjct: 698 ALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLID 757

Query: 413 FYCKCG----------------------------------YDALALFNEMRNTGVKPTII 438
            Y KCG                                   +AL +F +M    + P  +
Sbjct: 758 MYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEV 817

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TF  +LSAC H G V EG+K FD M   Y + P ++H  CMVD+  R G LNEA   I +
Sbjct: 818 TFLGVLSACSHAGRVSEGRKVFDLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAEEFINK 877

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           +  +AD  +WS++L  C  HGD+  G++ A++++EL P+++ +Y+ LSSI+A S  W  +
Sbjct: 878 LGCKADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGA 937

Query: 559 SLIRDIMREKHVGKLPGCSWAD 580
             +R  M+ K V KLPG SW +
Sbjct: 938 VSLRREMKLKGVKKLPGYSWIE 959



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 154/619 (24%), Positives = 253/619 (40%), Gaps = 167/619 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C+    ++ G+Q+H    K G    +      L+ MY +C    DA L+FD  
Sbjct: 145 FAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSF-CQGGLIDMYAKCRYLRDARLVFDGA 203

Query: 68  PRRNCFSWNAMIEGFMK-----------------------------------LGHKEKSL 92
              +  SW A+I G+++                                   LG    + 
Sbjct: 204 LNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADAR 263

Query: 93  QLFNVMPQKNDFSWNMLISGFAK---------------------------------ADLA 119
           +LF  +P  N  +WN++ISG AK                                 A L+
Sbjct: 264 KLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLS 323

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L YG  +H+     GLD +  +GS+LVN+Y K                           
Sbjct: 324 MLNYGSMVHAQATKEGLDDNVYVGSALVNMYAK--------------------------- 356

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               C KM+ A++VF+   + + V+WN+M+ G+  N    E +  F  M+R+G   D  T
Sbjct: 357 ----CSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFT 412

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             S+ SAC+SL +L  G Q+H    K     ++ VA+AL+D Y+K G   +A K F  +K
Sbjct: 413 FTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMK 472

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           ++D +                               SWN++IVG  Q     EA  +F  
Sbjct: 473 IHDNV-------------------------------SWNAIIVGYVQEEYNDEAFFMFRR 501

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M    +  D+ SLAS++SACAN+  L+ G+Q    +  +GLD+     +SL+D Y KCG 
Sbjct: 502 MVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGV 561

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A+ LF E++  G+KPT +TF  +L  C
Sbjct: 562 VLAARDVFYSMPSRNVVSVNALIAGYTMGHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGC 621

Query: 448 DHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           D   ++  G++     MKW +    E+   S +  L+  +    ++  L  ++ +   + 
Sbjct: 622 DGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLC-LYMNSQRFVDSETLFSELQYPKGLV 680

Query: 507 MWSSILRGCVA--HGDKGL 523
           +W++++ G     H +K L
Sbjct: 681 VWTALISGYAQQNHHEKAL 699



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 146/598 (24%), Positives = 267/598 (44%), Gaps = 113/598 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ+ +T   IH  K L +    KG+L       N ++ +Y++CGN   A   F  + ++
Sbjct: 53  VLQALSTAKVIH-SKSLKIGVGLKGLL------GNVIVDLYVKCGNVDFAQKAFSRLEKK 105

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           + F+WN+++  ++  G     +Q F  M     + N+F++ M++S  A + L  + +G+Q
Sbjct: 106 DVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLS--ACSGLQDVNFGRQ 163

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKC-----------GDFN------------------ 157
           +H  +   G  F S     L+++Y KC           G  N                  
Sbjct: 164 VHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGF 223

Query: 158 --SANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
              A +V + M+     PD   L  +++ Y   G++ DAR++F +  + + V WN MISG
Sbjct: 224 PMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISG 283

Query: 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           +       EA+  F ++++ G+    S+L SVLSA +SL  L +G  VH  A K G+ D+
Sbjct: 284 HAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDN 343

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
           V V SAL++ Y+K                               C +++ AK +F ++  
Sbjct: 344 VYVGSALVNMYAK-------------------------------CSKMDAAKQVFNSLGE 372

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           ++++ WN+M+ G +QNG   E ++ F  M +   + D+F+  S+ SACA++  L  G Q+
Sbjct: 373 RNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQL 432

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCGY-------------------------------- 419
              +      S+  ++ +LVD Y K G                                 
Sbjct: 433 HTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYN 492

Query: 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
            +A  +F  M + GV P  ++  +I+SAC +   +K GQ+    +  +  +D      S 
Sbjct: 493 DEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQ-CHCLLVKVGLDTSTCAGSS 551

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
           ++D++ + G +  A ++   MP    V + + I    + H ++ +      +M+ L P
Sbjct: 552 LIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTMGHLEEAIHLFQEIQMVGLKP 609



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 207/470 (44%), Gaps = 101/470 (21%)

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           K  L AL   K IHS  L  G+    +LG+ +V+LY KCG+ + A +  + +++ D F  
Sbjct: 51  KPVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAW 110

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           ++++S Y + G       +F     +   MWN                   H++R N   
Sbjct: 111 NSVLSMYLDHG-------LFATVVQSFVCMWN-------------------HEVRPNEF- 143

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHA----------CKVGVID-------------- 270
               T A VLSACS L  +  G+QVH             C+ G+ID              
Sbjct: 144 ----TFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLV 199

Query: 271 -------DVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRI 319
                  D +  +AL+  Y + G P +A K+F  ++      D I L T++  Y + GR+
Sbjct: 200 FDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRL 259

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
            DA+ +F  +PN ++++WN MI G ++ G   EA+  F  + K  L+  + SL SV+SA 
Sbjct: 260 ADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAI 319

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------------------- 417
           A++S L  G  V A+ T  GLD +  + ++LV+ Y KC                      
Sbjct: 320 ASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWN 379

Query: 418 -----------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        + +  F+ M+  G +P   TFT+I SAC     +  G +    M  +
Sbjct: 380 AMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMI-K 438

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
                 +   + +VD++A++G L EA    E M    +V  W++I+ G V
Sbjct: 439 NKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVS-WNAIIVGYV 487


>gi|218197545|gb|EEC79972.1| hypothetical protein OsI_21597 [Oryza sativa Indica Group]
          Length = 731

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 181/610 (29%), Positives = 284/610 (46%), Gaps = 74/610 (12%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           G+ +  + + N L+   +      DA   FD MP RN  SW AMI+G   +   + + QL
Sbjct: 129 GVESPNVALWNALISGLVMNHRVGDARKAFDRMPVRNVVSWTAMIKGHFTVHEVDMAFQL 188

Query: 95  FNVMPQKNDFSWNMLISGF---------------------------------AKADLAAL 121
           F +MP KN  SW ++I GF                                 A A + ++
Sbjct: 189 FKLMPVKNSVSWCVMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSI 248

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             G+ IH   + +G  +D VL +SLV +Y K  D   A    + M+       +A++ GY
Sbjct: 249 RGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAMLCGY 308

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
               K+++AR++FD   +   + WNSMI+GYI++    +A  L+ KM     LE A+ L 
Sbjct: 309 IYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKS-LEAATAL- 366

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
             +S     G L+  + +  +  ++    DV+  + LL  Y K G   DA  LF  ++  
Sbjct: 367 --MSWFIDNGMLDKARDMFYNMPQI----DVMSCTTLLFGYVKGGHMDDALDLFHMMQKR 420

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
             +  N MI+     G+I +A  +F   P +  ++W+ ++ GL+ NG   EAL  +  M 
Sbjct: 421 TVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKML 480

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
             ++R  +  ++S+IS  +N S +  G+Q  A    IGLDS  +I  SL+  YCKCG   
Sbjct: 481 LSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSLISLYCKCGEMI 540

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +A+ +F  M    V P  ITF  +LSAC+
Sbjct: 541 IAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDDITFLGVLSACN 600

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H  L++E + +F+AM   Y I P I HY+CMVDLF R   + EA  L++ MPFE D  +W
Sbjct: 601 HMSLLEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCMIKEAEGLVKSMPFEPDSAIW 660

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           +S+L GC   G+  L    A ++I +DP     Y+ L S+   + +      +R  ++  
Sbjct: 661 TSLLSGCRLTGNDKLAEHAASQLIAIDPCTKMPYLHLISVHGLTNKSTVIDSLRSQIKST 720

Query: 569 HVGKLPGCSW 578
              K  G SW
Sbjct: 721 ATEKDVGYSW 730



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 229/467 (49%), Gaps = 38/467 (8%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           NRL+  ++R G    A  +FD MPRR+  SWN ++    + G   +++  F  M      
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFR 98

Query: 99  PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVN---LYGKCG 154
           P    FS  +     A A L ALE G  +    +++G++  +V L ++L++   +  + G
Sbjct: 99  PDHTSFSTAL----SACARLEALEMGSCLEQ--VLDGVESPNVALWNALISGLVMNHRVG 152

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
           D   A +  + M   +    +A+I G+    +++ A ++F      +SV W  MI G+++
Sbjct: 153 D---ARKAFDRMPVRNVVSWTAMIKGHFTVHEVDMAFQLFKLMPVKNSVSWCVMIGGFVT 209

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           + + +EA+ LF+ +  NG       L  +++A + +  +  G+ +HG A K G   D+++
Sbjct: 210 HEKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVL 269

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            ++L+  Y K    ++A   F +++       N M+  Y    +I++A+ +F +M N+  
Sbjct: 270 EASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDK 329

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
           ISWNSMI G   +G   +A +L+  M +  L     +  +++S   +   L+    +F  
Sbjct: 330 ISWNSMINGYINDGRIADATELYSKMTEKSLE----AATALMSWFIDNGMLDKARDMFYN 385

Query: 395 VTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
           +  I    D +  T+L+  Y K G+  DAL LF+ M+    K T++T+  ++S   H G 
Sbjct: 386 MPQI----DVMSCTTLLFGYVKGGHMDDALDLFHMMQ----KRTVVTYNVMISGLFHQGK 437

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           + E  K F+    +  +      +SC+V   A  G ++EA+   ++M
Sbjct: 438 ITEAYKLFNESPTRDSVT-----WSCLVAGLATNGLIHEALQFYKKM 479


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 151/453 (33%), Positives = 245/453 (54%), Gaps = 64/453 (14%)

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           Q+L M  + D    + LI+ Y+ CG ++ AR+VFD     S V WN+MI     N E+ E
Sbjct: 89  QILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENE 148

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL L  +M+R G      T++SVL AC++   L   + +H  A K  +  +V VA+ALLD
Sbjct: 149 ALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLD 208

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K                               CG ++DA  +F +MP++S+++W+SM
Sbjct: 209 VYAK-------------------------------CGLMKDAVCVFESMPDRSVVTWSSM 237

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
             G  QN    +AL LF    +  L+ D+F ++SVI ACA ++++  G+Q+ A ++  G 
Sbjct: 238 AAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGF 297

Query: 401 DSDQIISTSLVDFYCKCG---------------------------------YDALALFNE 427
            S+  +++SL+D Y KCG                                  + + LF +
Sbjct: 298 CSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEK 357

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M+  G+ P  +TF ++LSAC H GLV++GQK+FD M  ++H+ P + HYSCMVD  +RAG
Sbjct: 358 MQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAG 417

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
            + EA +LI ++PF A   MW S+L  C  HG+  L    A+++ +++P N+  Y+ LS+
Sbjct: 418 QIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSN 477

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++A +G+W++ + +R +++E  V K  G SW +
Sbjct: 478 MYAANGKWDEVAKMRKLLKESDVKKERGKSWIE 510



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 180/396 (45%), Gaps = 65/396 (16%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + ++  +L+ C     +  GK  H   L  G L + L  +N L+ MY +CG+   A  
Sbjct: 62  THVSFVHEILKLCAKRKLLLQGKACHAQILLMG-LKTDLLTSNILINMYSKCGSVDFARQ 120

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAA 120
           +FDEMP R+  SWN MI    + G + ++L L   M ++        IS    A A   A
Sbjct: 121 VFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCA 180

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L   + +H+  +   +D +  + ++L+++Y KC                           
Sbjct: 181 LSECQLLHAFAIKAAMDLNVFVATALLDVYAKC--------------------------- 213

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
               G M DA  VF+   D S V W+SM +GY+ N    +AL LF K    G+  D   +
Sbjct: 214 ----GLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLM 269

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SV+ AC+ L  +  GKQ++    K G   ++ VAS+L+D Y+K G   ++ K+F +++ 
Sbjct: 270 SSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEK 329

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + +L                               WN+MI GLS++   +E + LF  M
Sbjct: 330 RNVVL-------------------------------WNAMISGLSRHARSLEVMILFEKM 358

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
            ++ L  +  +  SV+SAC ++  +  G++ F  +T
Sbjct: 359 QQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMT 394


>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
          Length = 655

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 231/444 (52%), Gaps = 33/444 (7%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D F  +AL   YA CG + D R+VFD       V W  M+  Y       EALLLF KM+
Sbjct: 184 DGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMK 243

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
            +GV+ D   LA+VL AC  +  L  GK +H +     +I    ++SAL+  Y+      
Sbjct: 244 NSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANME 303

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
            A KL++E+   D +    M++ Y+   ++E A+ IF  MP K ++SW++MI G   +  
Sbjct: 304 MAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQ 363

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           P EAL LF  M +  +R D+ ++ SVISACAN+ SL+  + + A +   GL+    I  +
Sbjct: 364 PNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNA 423

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           L+D + KCG                                   +L LF +M++ G +P 
Sbjct: 424 LIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPN 483

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            +TF ++L AC H GLV EG+  F +M  QY I+P+ EHY CMVDL  RA  + EAV+LI
Sbjct: 484 EVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLI 543

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
           E M  E +V +W S+L  C  HGD  LG   A+++++LDP +  A + L  I+  S    
Sbjct: 544 ESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLLKIYMKSDNLN 603

Query: 557 KSSLIRDIMREKHVGKLPGCSWAD 580
            +  +R +M+   V K  G SW +
Sbjct: 604 NAQEVRGVMKLHRVSKETGLSWME 627



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 223/471 (47%), Gaps = 44/471 (9%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           H   ++ G L+    +   L   Y  CG   D   +FD M  R+  SW  M++ + +  +
Sbjct: 173 HALAVRTGALDDGF-VGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRN 231

Query: 88  KEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSS 145
            +++L LF  M         ++++    A   +  L  GK IHS++LV+ +   + + S+
Sbjct: 232 YKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSA 291

Query: 146 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 205
           L++LY  C +   A ++ N M   D    +A++SGYA   K+  AR +FD   +   V W
Sbjct: 292 LISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSW 351

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
           ++MISGY+ +N+  EAL LF+ M+  G+  D  T+ SV+SAC++LG L+  K +H     
Sbjct: 352 SAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKN 411

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
            G+   + + +AL+D ++K G  + A  +F+E+                           
Sbjct: 412 SGLNKVLHICNALIDMFAKCGGINLALNVFNEM--------------------------- 444

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
               P K++I+W SMI   + +G    +L LF  M       ++ +  S++ AC +   +
Sbjct: 445 ----PLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLV 500

Query: 386 ELGEQVFAR-VTIIGLDSDQIISTSLVDF--YCKCGYDALALFNEMRNTGVKPTIITFTA 442
             G  +F+  V   G++        +VD     K   +A++L   M    ++P +  + +
Sbjct: 501 HEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMH---LEPNVPIWGS 557

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC-MVDLFARAGCLNEA 492
           +L+AC   G +K G   F A K    +DP  +  S  ++ ++ ++  LN A
Sbjct: 558 LLAACWMHGDLKLGA--FAAKKI-LQLDPNHDGASVLLLKIYMKSDNLNNA 605



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 44/276 (15%)

Query: 228 MRRNGVLEDASTLASVL--SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           +RR G+          L  SA    G   +    H  A + G +DD  V +AL   Y+  
Sbjct: 139 LRRAGLPAPGPRALPALLRSAARCEGAGAYVAATHALAVRTGALDDGFVGTALAGAYAAC 198

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           G   D  K+F  + V D                               ++SW  M+    
Sbjct: 199 GCVRDTRKVFDGMAVRD-------------------------------VVSWGVMLDSYC 227

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           Q  +  EAL LF  M    +  D+  LA+V+ AC +I  L +G+ + + + +  +     
Sbjct: 228 QTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAH 287

Query: 406 ISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
           IS++L+  Y  C    +A  L+NEM     +  +++ TA++S       V+  +  FD M
Sbjct: 288 ISSALISLYASCANMEMAEKLYNEM----PRKDLVSSTAMVSGYARNRKVEIARSIFDGM 343

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
                 + ++  +S M+  +  +   NEA++L   M
Sbjct: 344 P-----EKDVVSWSAMISGYVDSNQPNEALSLFNGM 374



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 17/235 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    S+   K +H  F+K   LN  L I N L+ M+ +CG    AL +F+EMP +
Sbjct: 389 VISACANLGSLDKAKWIHA-FIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLK 447

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           N  +W +MI  F   G  + SL+LF  M     + N+ ++  L+     A L  +  G+ 
Sbjct: 448 NVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGL--VHEGRL 505

Query: 127 IHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANC 184
           + S ++   G++        +V+L G+      A  ++  M  EP+     +L++     
Sbjct: 506 LFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMH 565

Query: 185 GKMN----DARRV--FDRTTDTSSVMWNS--MISGYISNNEDTEALLLFHKMRRN 231
           G +      A+++   D   D +SV+     M S  ++N ++   ++  H++ + 
Sbjct: 566 GDLKLGAFAAKKILQLDPNHDGASVLLLKIYMKSDNLNNAQEVRGVMKLHRVSKE 620


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 163/575 (28%), Positives = 267/575 (46%), Gaps = 90/575 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y   G P +A  +FDEMP RN  SWN ++ G++K    E++  +F +MP++N  
Sbjct: 52  NSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVV 111

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILV------NGLDFDSVLGSSLVNLYGKCGDFNS 158
           SW  ++ G+       ++ G  + + +L       N + +  + G  +       G  + 
Sbjct: 112 SWTAMVKGY-------VQEGMVVEAELLFWRMPERNEVSWTVMFGGLI-----DGGRIDD 159

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           A ++ +MM   D    + +I G    G++++AR +FD   + + + W +MI+GY  N   
Sbjct: 160 ARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRV 219

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
             A  LF  M                                          +V   S L
Sbjct: 220 DVARKLFEVMPEK--------------------------------------TEVSWTSML 241

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L  Y+  G   DA + F  + +   I  N MI      G I  A+ +F  M ++   +W 
Sbjct: 242 LG-YTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWR 300

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
            MI    + G  +EAL+LF  M +  +R    SL S++S CA ++SL+ G QV A +   
Sbjct: 301 GMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRC 360

Query: 399 GLDSDQIISTSLVDFYCKCGY---------------------------------DALALF 425
             D D  +++ L+  Y KCG                                  +AL +F
Sbjct: 361 QFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVF 420

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
           +EM  +G  P  +T  AIL+AC + G ++EG + F++M+ ++ + P +EHYSC VD+  R
Sbjct: 421 HEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGR 480

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545
           AG +++A+ LI  M  + D  +W ++L  C  H    L    A+++ E++PENA  YI L
Sbjct: 481 AGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILL 540

Query: 546 SSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           SSI A+  +W   + +R  MR K+V K PGCSW +
Sbjct: 541 SSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIE 575



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 123/270 (45%), Gaps = 39/270 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C T  S+  G+Q+H H ++    +  + +A+ L+ MY++CG    A L+FD  
Sbjct: 334 LISILSVCATLASLQYGRQVHAHLVRCQ-FDGDVYVASVLMTMYVKCGELVKAKLVFDRF 392

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
           P ++   WN++I G+   G  E++L++F+ MP     S  M       A L A  YG ++
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFHEMP----LSGTMPNKVTLIAILTACSYGGKL 448

Query: 128 HSHILVNGLDFDSVLG-----------SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLS 175
              + +    F+S+             S  V++ G+ G  + A +++N M  +PD     
Sbjct: 449 EEGLEI----FESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWG 504

Query: 176 ALISGYANCGKMN----DARRVFD-RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
           AL+       +++     A+++F+    +    +  S I+   S   D        +MR+
Sbjct: 505 ALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVA------EMRK 558

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           N   ++ S        CS   ++E GK+VH
Sbjct: 559 NMRTKNVSKFP----GCS---WIEVGKKVH 581


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 179/607 (29%), Positives = 288/607 (47%), Gaps = 105/607 (17%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           ++LQ C     +  G  +H H ++ G  +S L ++ +L+  Y++ G   +A  +FD MP 
Sbjct: 42  KILQLCIETEDLKQGCLIHSHIIRNG-FDSNLHLSTKLIIFYVKFGETINARKVFDRMPE 100

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGK 125
           RN  SW A I G+ K GH + +L +F+ M     + N F++  ++   A   L  LE G 
Sbjct: 101 RNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLR--ACTGLRCLERGM 158

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH  I  N    +  + S+LV+L+ KCG+   A  +   M E D    +A+I GYA   
Sbjct: 159 QIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYA--- 215

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                                       + + + ++  +F+ M   GV  D  TL SVL 
Sbjct: 216 ----------------------------AQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLK 247

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK-RGMPSDACKLFSELKVYDTI 304
           A S    L    Q+HG   ++G    + +  +L+D Y+K  GM S               
Sbjct: 248 ASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKS--------------- 292

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS-PIEALDLFCNMNKL 363
                            A  ++++M  K +IS+ +++ G ++  S   EALDLF +M  +
Sbjct: 293 -----------------ASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHI 335

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
            + +D  +  ++++ CA+I+SL +G Q+ A         D     +LVD Y K       
Sbjct: 336 FMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDA 395

Query: 418 ---------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      G++A+AL+ +M   G+KP  ITF ++L AC H 
Sbjct: 396 TRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFACSHS 455

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GL  EG + F+ M  +Y+I P  EHYSCM+DLFAR G L EA N+I +M  + +  +W +
Sbjct: 456 GLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSSLWGA 515

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           IL  C  +G   LG   A  ++ +DPEN+  Y+ L+ I+A SG W+K+  +R++M  + +
Sbjct: 516 ILGACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAASGSWDKACRMRNLMEYRSL 575

Query: 571 GKLPGCS 577
            K+PG S
Sbjct: 576 KKIPGYS 582



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/403 (20%), Positives = 153/403 (37%), Gaps = 101/403 (25%)

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           +S    +L  C     L+ G  +H H  + G   ++ +++ L+  Y K G   +A K+F 
Sbjct: 37  SSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFD 96

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            +                               P ++++SW + I G ++NG   +AL +
Sbjct: 97  RM-------------------------------PERNVVSWTAQISGYAKNGHYQDALLV 125

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M +  +R ++F+  SV+ AC  +  LE G Q+   +       +  + ++LVD + K
Sbjct: 126 FSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSK 185

Query: 417 CGY---------------------------------DALALFNEMRNTGVKPTIITFTAI 443
           CG                                  D+  +F  M   GV P   T  ++
Sbjct: 186 CGNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSV 245

Query: 444 LSA----------CDHCGLV---------------------KEGQKWFDAMKWQYHIDPE 472
           L A          C   G++                      EG K   A+ ++  +  +
Sbjct: 246 LKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASAL-YKSMLKKD 304

Query: 473 IEHYSCMVDLFARAGCLN-EAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVA 528
           +  ++ ++  +AR    + EA++L + M     E D   + ++L  C       +GR++ 
Sbjct: 305 VISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIH 364

Query: 529 ERMIELDPENACAYIQ-LSSIFATSGEWEKSSLIRDIMREKHV 570
              I+  P    A    L  ++A SGE E ++     M+EK+V
Sbjct: 365 ALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNV 407


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 192/668 (28%), Positives = 304/668 (45%), Gaps = 146/668 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
           GKQ+H  F+ +  L++   +   L+ MY + G   DA  +F E+  + N   WN MI GF
Sbjct: 189 GKQIH-GFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGF 247

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE-----YGKQIHSHILVNGLD 137
              G  E SL L+  M  KN+ S  ++ + F  A  A  +     +G+QIH  ++  GL 
Sbjct: 248 GGSGICESSLDLY--MLAKNN-SVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGL- 303

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
                                           D +  ++L+S Y+ CG + +A  VF   
Sbjct: 304 ------------------------------HNDPYVCTSLLSMYSKCGMVGEAETVFSCV 333

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
            D    +WN+M++ Y  N+    AL LF  MR+  VL D+ TL++V+S CS LG   +GK
Sbjct: 334 VDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGK 393

Query: 258 QVHGHACKVGVIDDVIVASALLDTYS-------------------------------KRG 286
            VH    K  +     + SALL  YS                               K G
Sbjct: 394 SVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNG 453

Query: 287 MPSDACKLFSELK-----------------------------------------VYDTIL 305
              +A K+F ++K                                         V +  +
Sbjct: 454 KFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFV 513

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            +++I +YS CG  E A  +F +M  +++++WNSMI   S+N  P  ++DLF  M    +
Sbjct: 514 GSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGI 573

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD----- 420
             D  S+ SV+ A ++ +SL  G+ +      +G+ SD  +  +L+D Y KCG+      
Sbjct: 574 FPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAEN 633

Query: 421 ----------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       AL+LF+EM+  G  P  +TF +++SAC+H G 
Sbjct: 634 IFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGF 693

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+EG+  F+ MK  Y I+P +EHY+ MVDL  RAG L EA + I+ MP EAD  +W  +L
Sbjct: 694 VEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLL 753

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
                H +  LG   AE+++ ++PE    Y+QL +++  +G   +++ +  +M+EK + K
Sbjct: 754 SASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHK 813

Query: 573 LPGCSWAD 580
            PGCSW +
Sbjct: 814 QPGCSWIE 821



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 128/476 (26%), Positives = 209/476 (43%), Gaps = 81/476 (17%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T +     LL++C+   ++  GK +H   +  G       IA  L+ MY++CG    A+ 
Sbjct: 58  TSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPF-IATSLVNMYVKCGFLDYAVQ 116

Query: 63  LFDEMPR-------RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLIS 111
           +FD   +       R+   WN+MI+G+ K    ++ +  F  M     + + FS ++++S
Sbjct: 117 VFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVS 176

Query: 112 GFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
              K      E GKQIH  +L N LD DS L ++L+++Y K                   
Sbjct: 177 VMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFK------------------- 217

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRR 230
           F LS             DA RVF    D S+ V+WN MI G+  +     +L L+   + 
Sbjct: 218 FGLSI------------DAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKN 265

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
           N V   +++    L ACS       G+Q+H    K+G+ +D  V ++LL  YSK GM   
Sbjct: 266 NSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGM--- 322

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
                                       + +A+ +F  + +K L  WN+M+   ++N   
Sbjct: 323 ----------------------------VGEAETVFSCVVDKRLEIWNAMVAAYAENDYG 354

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
             ALDLF  M +  +  D F+L++VIS C+ +     G+ V A +    + S   I ++L
Sbjct: 355 YSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESAL 414

Query: 411 VDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
           +  Y KCG   DA  +F  M     +  ++ + +++S     G  KE  K F  MK
Sbjct: 415 LTLYSKCGCDPDAYLVFKSME----EKDMVAWGSLISGLCKNGKFKEALKVFGDMK 466



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 213/525 (40%), Gaps = 114/525 (21%)

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-------AKADLAALEYGKQ 126
           S N+ I   ++ G   ++L L++    K+D S     S F       A + L  L YGK 
Sbjct: 26  SINSGIRALIQKGEYLQALHLYS----KHDGSSPFWTSVFTFPSLLKACSALTNLSYGKT 81

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  ++V G  +D  + +SLVN+Y KCG  + A QV +               G++    
Sbjct: 82  IHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFD---------------GWSQSQS 126

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
              AR V          +WNSMI GY       E +  F +M   GV  DA +L+ V+S 
Sbjct: 127 GVSARDV---------TVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSV 177

Query: 247 -CSSLGF-LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            C    F  E GKQ+HG   +  +  D  + +AL+D Y K G+  DA ++F E       
Sbjct: 178 MCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVE------- 230

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                         IED  ++         + WN MIVG   +G    +LDL+       
Sbjct: 231 --------------IEDKSNV---------VLWNVMIVGFGGSGICESSLDLYMLAKNNS 267

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------- 417
           +++   S    + AC+   +   G Q+   V  +GL +D  + TSL+  Y KC       
Sbjct: 268 VKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAE 327

Query: 418 --------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                     GY AL LF  MR   V P   T + ++S C   G
Sbjct: 328 TVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLG 387

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           L   G K   A  ++  I       S ++ L+++ GC  +A  + + M  E D+  W S+
Sbjct: 388 LYNYG-KSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSME-EKDMVAWGSL 445

Query: 512 LRGCVAHGDKGLGRKVAERMIE----LDPE--------NACAYIQ 544
           + G   +G      KV   M +    L P+        NACA ++
Sbjct: 446 ISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLE 490


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 189/656 (28%), Positives = 319/656 (48%), Gaps = 122/656 (18%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A  LQ C        GK LH   LK+G     L   N LL MY++     DA  LFDEMP
Sbjct: 42  ANALQDCIQKDEPSRGKGLHCEILKRGGC-LDLFAWNILLNMYVKSDFLCDASKLFDEMP 100

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYG 124
            RN  S+  +I+G+ +     ++++LF  + ++    N F +  ++      D   L +G
Sbjct: 101 ERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWG 160

Query: 125 KQIHSHILVNGLD-------------------------FDSVL------GSSLVNLYGKC 153
             IH+ I   G +                         FD +L       + +V  + + 
Sbjct: 161 --IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAEN 218

Query: 154 GDFNSANQVLNMMK----EPDDF--------CLS-------------------------- 175
             F  A ++ + M+    +P++F        CL                           
Sbjct: 219 DCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVG 278

Query: 176 -ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
            AL+  Y   G ++DAR  F+       + W+ MI+ Y  +++  EA+ +F +MR+  VL
Sbjct: 279 VALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVL 338

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  T ASVL AC+++  L  G Q+H H  K+G+  DV V++AL+D              
Sbjct: 339 PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMD-------------- 384

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNGSPIEA 353
                            VY+ CGR+E++  +F   P+++ ++ WN++IVG  Q G   +A
Sbjct: 385 -----------------VYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKA 427

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L LF NM +  ++  + + +S + ACA++++LE G Q+ +       D D +++ +L+D 
Sbjct: 428 LRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDM 487

Query: 414 YCKCG--YDALALFNEMRNTGVKPTIITFTAILS-------ACDHCGLVKEGQKWFDAMK 464
           Y KCG   DA  +F+ M     K   +++ A++S       AC + GL+ +GQ +F +M 
Sbjct: 488 YAKCGSIKDARLVFDLMN----KQDEVSWNAMISGYSMHGLACANAGLLDQGQAYFTSMI 543

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             + I+P IEHY+CMV L  R G L++AV LI+++PF+  V +W ++L  CV H D  LG
Sbjct: 544 QDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELG 603

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           R  A+ ++E++P++   ++ LS+++AT+  W+  + +R  M+ K V K PG SW +
Sbjct: 604 RISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIE 659



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + Y +  L++C +  ++  G Q+H     K   +  + + N L+ MY +CG+  DA L
Sbjct: 442 TEVTY-SSALRACASLAALEPGLQIH-SLTVKTTFDKDIVVTNALIDMYAKCGSIKDARL 499

Query: 63  LFDEMPRRNCFSWNAMIEGF 82
           +FD M +++  SWNAMI G+
Sbjct: 500 VFDLMNKQDEVSWNAMISGY 519


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  272 bits (695), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 189/657 (28%), Positives = 311/657 (47%), Gaps = 115/657 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDEMPR 69
           +L+ C T   ++   ++H H +K  +L       N L    +      D A+ +F ++  
Sbjct: 30  ILEQCKTIRDLN---EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDE 86

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGK 125
            +  ++N MI GF       +++ LF  M     Q ++F++  ++   ++  L AL  G+
Sbjct: 87  PDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSR--LQALSEGE 144

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+ I+                   KCG F S             F  + LI  YANCG
Sbjct: 145 QIHALIM-------------------KCG-FGSHG-----------FVKNTLIHMYANCG 173

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++  ARRVFD  ++ +   WNSM +GY  +    E + LFH+M    +  D  TL SVL+
Sbjct: 174 EVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLT 233

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC  L  LE G+ ++ +  + G+                +G P+               L
Sbjct: 234 ACGRLADLELGEWINRYVEEKGL----------------KGNPT---------------L 262

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
           + +++ +Y+ CG+++ A+ +F  M  + +++W++MI G SQ     EALDLF  M K ++
Sbjct: 263 ITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANI 322

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             ++ ++ S++S+CA + +LE G+ V   +    +     + T+L+DFY KCG       
Sbjct: 323 DPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIE 382

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       AL  F  M    V+P  +TF  +LSAC H GL
Sbjct: 383 VFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGL 442

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V EG+  F +M   + I+P IEHY CMVD+  RAG + EA   I+ MP + +  +W ++L
Sbjct: 443 VDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLL 502

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H +  +G +  +++I L+P ++  YI LS+I+A+ G WE +  +R  M+EK + K
Sbjct: 503 ASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKK 562

Query: 573 LPGCSWA--DGIAFNCWFLDTMFLQLANF-----DEIKQHQSADFCDYIHGFDQARL 622
            PGCS    DG+    +  D +  Q         D +KQ +SA    Y+    +ARL
Sbjct: 563 TPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSA---GYVPNTAEARL 616



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L SC    ++  GK +H  F+KK  +  T+ +   L+  Y +CG+   ++ +F +M
Sbjct: 329 MVSILSSCAVLGALETGKWVHF-FIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKM 387

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P +N  SW  +I+G    G  +K+L+ F +M +K    ND ++  ++S  + A L  ++ 
Sbjct: 388 PVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGL--VDE 445

Query: 124 GKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALIS 179
           G+ +   +  + G++        +V++ G+ G    A Q + NM  +P+      L++
Sbjct: 446 GRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLA 503


>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
 gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 783

 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 183/644 (28%), Positives = 295/644 (45%), Gaps = 142/644 (22%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N LL    + G   +A  +FD+MP R+ F+WN MI  +        + +LF   P KN 
Sbjct: 31  SNLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNT 90

Query: 104 FSWNMLISGFAKA---------------------------------DLAALEYGKQIHSH 130
            SWN LISG+ K+                                  L  L  G+QIH H
Sbjct: 91  ISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGH 150

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +  G D D       VN+                        ++ L++ YA C ++++A
Sbjct: 151 TIKTGFDLD-------VNV------------------------VNGLLAMYAQCKRISEA 179

Query: 191 RRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
             +F+    + ++V W SM++GY  N    +A+  F  +RR G   +  T  SVL+AC+S
Sbjct: 180 EYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACAS 239

Query: 250 LGFLEHGKQVHGHACKVGV-------------------------------IDDVIVASAL 278
           +     G QVH    K G                                +DDV+  +++
Sbjct: 240 VSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSM 299

Query: 279 LDTYSKRGMPSDACKLF--------------------------SELKV------------ 300
           +    ++G+  +A  +F                          +E+K+            
Sbjct: 300 IVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTG 359

Query: 301 YDTILL--NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
           Y T  L  N ++ +Y+  G ++ A  +F  M  K +ISW +++ G + NGS  EAL LFC
Sbjct: 360 YATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFC 419

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           NM    +  DK   ASV+SA A ++ LE G+QV       G  S   ++ SLV  Y KCG
Sbjct: 420 NMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCG 479

Query: 419 --YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
              DA  +FN M        +IT+T ++      GL+++ Q++FD+M+  Y I P  EHY
Sbjct: 480 SLEDANVIFNSMEIR----DLITWTCLIVGYAKNGLLEDAQRYFDSMRTVYGITPGPEHY 535

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
           +CM+DLF R+G   +   L+ QM  E D  +W +IL     HG+   G + A+ ++EL+P
Sbjct: 536 ACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIENGERAAKTLMELEP 595

Query: 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            NA  Y+QLS++++ +G  ++++ +R +M+ +++ K PGCSW +
Sbjct: 596 NNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVE 639



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 225/490 (45%), Gaps = 101/490 (20%)

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
           + K  L    +G  IHS+     L  + +LG        K G  + A Q+ + M E D+F
Sbjct: 6   YRKWRLPLKPFGSCIHSYADRTKLHSNLLLGD-----LSKSGRVDEARQMFDKMPERDEF 60

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
             + +I  Y+N  +++DA ++F      +++ WN++ISGY  +    EA  LF +M+ +G
Sbjct: 61  TWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDG 120

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +  +  TL SVL  C+SL  L  G+Q+HGH  K G   DV V                  
Sbjct: 121 IKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNV------------------ 162

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPI 351
                        +N ++ +Y+ C RI +A+++F TM   K+ ++W SM+ G SQNG   
Sbjct: 163 -------------VNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAF 209

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           +A++ F ++ +   + ++++  SV++ACA++S+  +G QV   +   G  ++  + ++L+
Sbjct: 210 KAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALI 269

Query: 412 DFYCKCGY---------------------------------DALALFNEMRNTGVK---- 434
           D Y KC                                   +AL++F  M    +K    
Sbjct: 270 DMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDF 329

Query: 435 --PTIITFTAI------LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
             P+I+   A+      +++  HC +VK G   +  +             + +VD++A+ 
Sbjct: 330 TIPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVN------------NALVDMYAKR 377

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG--DKGLGRKVAERMIELDPENACAYIQ 544
           G ++ A+ + E M  E DV  W++++ G   +G  D+ L      R+  + P+     I 
Sbjct: 378 GIMDSALKVFEGM-IEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDK----IV 432

Query: 545 LSSIFATSGE 554
            +S+ + S E
Sbjct: 433 TASVLSASAE 442



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 144/322 (44%), Gaps = 45/322 (13%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +    H   +K G     L + N L+ MY + G    AL +F+ M  ++  SW A++ 
Sbjct: 345 MKIASSAHCLIVKTGYATYKL-VNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVT 403

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG---FAKADLAALEYGKQIHSHILVNGLD 137
           G    G  +++L+LF  M +    + + +++     A A+L  LE+G+Q+H + + +G  
Sbjct: 404 GNTHNGSYDEALKLFCNM-RVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFP 462

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
               + +SLV +Y KCG    AN + N M+  D    + LI GYA  G + DA+R FD  
Sbjct: 463 SSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLLEDAQRYFDSM 522

Query: 198 TDTSSVM-----WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
                +      +  MI  +  + +  +   L H+M    V  DA+   ++L+A    G 
Sbjct: 523 RTVYGITPGPEHYACMIDLFGRSGDFVKVEQLLHQME---VEPDATVWKAILAASRKHGN 579

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           +E+G++                                A K   EL+  + +    +  +
Sbjct: 580 IENGER--------------------------------AAKTLMELEPNNAVPYVQLSNM 607

Query: 313 YSSCGRIEDAKHIFRTMPNKSL 334
           YS+ GR ++A ++ R M ++++
Sbjct: 608 YSAAGRQDEAANVRRLMKSRNI 629


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  271 bits (694), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 176/531 (33%), Positives = 269/531 (50%), Gaps = 53/531 (9%)

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL---AALEYGKQIHSHILVNGLDFDSVL 142
           G  + + ++F+ +PQ N F +N LI G++ +D    A L + + I S +  N      VL
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 143 GS--------SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
            +          V ++G        + V         F  +ALI+ Y  CG ++ AR++F
Sbjct: 96  KACGCKSAYWEAVLVHGLAIKLGIGSLV---------FVQNALIAVYVVCGLIHCARKLF 146

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           D  TD + V WNSMI GY       EA LLF KMR  G+  D  T  ++LS CS    L+
Sbjct: 147 DDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLD 206

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G+ VH      GV  D+IV +AL+D Y+K G    A  +F   +  + +   +MI+ Y+
Sbjct: 207 LGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYA 266

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
             G IE A+ IF  MP K+++SWNSMI    + G   EALDLF  M    +  D+ +L S
Sbjct: 267 QHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVS 326

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK------------------ 416
           +++AC+ +  L +G+++   +          +  SL+D Y K                  
Sbjct: 327 ILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKN 386

Query: 417 ---------------CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                          CG +A+ LF EM+  G  P  IT T +LSAC H GLV  G  +FD
Sbjct: 387 LVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFD 446

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
            M   Y +  EIEHY+CMVDL  R G L EA+ LI +MP + DV +W ++L  C  HG+ 
Sbjct: 447 RMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNV 506

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            +G+++ ++++EL+P +   Y+ +S+I+  +  WE    IR +M ++ + K
Sbjct: 507 EIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKK 557



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 234/461 (50%), Gaps = 50/461 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C    +      +H   +K GI  S + + N L+ +Y+ CG    A  LFD++
Sbjct: 91  LPFVLKACGCKSAYWEAVLVHGLAIKLGI-GSLVFVQNALIAVYVVCGLIHCARKLFDDI 149

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA------- 120
             +   SWN+MI G+  +G+ +++  LF  M +     W M   GF   +L +       
Sbjct: 150 TDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMRE-----WGMEPDGFTFVNLLSVCSQSRD 204

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L+ G+ +H  I + G+  D ++ ++LV++Y KCG+ +SA  + +  +E +    +++IS 
Sbjct: 205 LDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISA 264

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA  G +  AR++FD+    + V WNSMIS Y+   +  EAL LF+KMR + V+ D +TL
Sbjct: 265 YAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATL 324

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            S+L+ACS LG L  GK++H +                               + S    
Sbjct: 325 VSILAACSQLGDLVMGKKIHNY-------------------------------ILSNKGA 353

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
           Y   L N++I +Y+ CG +  A  IF  MP K+L+SWN +I  L+ +G  +EA+ LF  M
Sbjct: 354 YGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEM 413

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVD--FYCKC 417
                  D+ +L  ++SAC++   +++G   F R+ +I     +I   + +VD       
Sbjct: 414 QADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGL 473

Query: 418 GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
             +A+ L   M    +KP ++ + A+L AC   G V+ G++
Sbjct: 474 LGEAIELIGRMP---MKPDVVVWGALLGACRIHGNVEIGKQ 511



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 179/368 (48%), Gaps = 53/368 (14%)

Query: 170 DDFCLSALISGYA--NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           +   L  LIS  A  + G +  A+R+FD+    +  M+NS+I GY ++++  +A+LLF +
Sbjct: 19  ETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRR 78

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M  +G+  +  TL  VL AC           VHG A K+G+   V V +AL         
Sbjct: 79  MICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNAL--------- 129

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
                                 I VY  CG I  A+ +F  + +K+L+SWNSMI G +  
Sbjct: 130 ----------------------IAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHM 167

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
           G+  EA  LF  M +  +  D F+  +++S C+    L+LG  V   + I G+  D I+ 
Sbjct: 168 GNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVR 227

Query: 408 TSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
            +LVD Y KCG  + A A+F+  +    +  ++++T+++SA    G ++  ++ FD M  
Sbjct: 228 NALVDMYAKCGNLHSAQAIFDRTQ----EKNVVSWTSMISAYAQHGSIEVARQIFDQMPG 283

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM------PFEADVGMWSSILRGCVAHG 519
           +      +  ++ M+  + R G   EA++L  +M      P EA +    SIL  C   G
Sbjct: 284 K-----NVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATL---VSILAACSQLG 335

Query: 520 DKGLGRKV 527
           D  +G+K+
Sbjct: 336 DLVMGKKI 343



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 160/373 (42%), Gaps = 61/373 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C+    + +G+ +H      G+    + + N L+ MY +CGN   A  +FD    +
Sbjct: 195 LLSVCSQSRDLDLGRYVHFCIEITGV-KIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEK 253

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N  SW +MI  + + G  E + Q+F+ MP KN  SWN +IS +       L  G+   + 
Sbjct: 254 NVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCY-------LREGQYREAL 306

Query: 131 ILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-----------AL 177
            L N +    V+   ++LV++   C         L M K+  ++ LS           +L
Sbjct: 307 DLFNKMRNSRVVPDEATLVSILAACSQLGD----LVMGKKIHNYILSNKGAYGVTLYNSL 362

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I  YA CG +  A  +F      + V WN +I     +    EA+ LF +M+ +G L D 
Sbjct: 363 IDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDE 422

Query: 238 STLASVLSACSSLGFLEHG--------------KQVHGHACKVGVIDDVIVASALLDTYS 283
            TL  +LSACS  G ++ G              +++  +AC V ++    +    ++   
Sbjct: 423 ITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIG 482

Query: 284 KRGMPSD---------ACKLFSELKVYDTIL------------LNTMIT-VYSSCGRIED 321
           +  M  D         AC++   +++   IL            L  +I+ +Y    R ED
Sbjct: 483 RMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWED 542

Query: 322 AKHIFRTMPNKSL 334
            K I + M ++ +
Sbjct: 543 VKKIRKLMIDRGI 555


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  271 bits (694), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 181/612 (29%), Positives = 286/612 (46%), Gaps = 117/612 (19%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG---------NPTDALL 62
           LQ+C    SI   KQ+H   +K      T+P  +  L +  R           +P  AL 
Sbjct: 29  LQTCK---SIKGLKQIHASIIK------TMPSPDAQLTISTRLSALCAQSLPIDPRYALS 79

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKE-KSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
           L  ++   N   +NA+I G     +   + L ++  M  K     N  I    KA  +  
Sbjct: 80  LLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESR 139

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A+  G+++H   +  GL  D  + ++L+ +Y                             
Sbjct: 140 AVREGEEVHGQAIKMGLASDVYVSNTLMRMY----------------------------- 170

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
             A C  +  AR+VFD +     V W +MI GY+      E + LF +M    +  D  T
Sbjct: 171 --AVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMT 228

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSEL 298
           L  VLS+C+ LG L  G+++H +  +   ++ DV V +AL+D Y K              
Sbjct: 229 LVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLK-------------- 274

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            CG    A+ +F+ MP K+++SWNSMI GL+Q G   E+L +F 
Sbjct: 275 -----------------CGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFR 317

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M +L ++ D  +L +V+++CAN+  LELG+ V A +    + +D  I  +LVD Y KCG
Sbjct: 318 KMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCG 377

Query: 419 Y---------------------------------DALALFNEMRNTGVKPTIITFTAILS 445
                                              AL LF+EM   G++P  +TF  +L+
Sbjct: 378 SIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLT 437

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV+EG+K+F+ M   Y++ P++EHY CMVDL  RAG +NEA   I  MP E D 
Sbjct: 438 ACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDA 497

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +  ++L  C  HG   LG  V +++ +++P    AY+ +S+I++++  W  +  +R  M
Sbjct: 498 FVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTM 557

Query: 566 REKHVGKLPGCS 577
           +E+++ K PGCS
Sbjct: 558 KERNLEKTPGCS 569



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 147/526 (27%), Positives = 248/526 (47%), Gaps = 87/526 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++  G+++H   +K G L S + ++N L++MY  C     A  +FD  P+R
Sbjct: 131 VLKACAESRAVREGEEVHGQAIKMG-LASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQR 189

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SW  MI+G++K+G   + + LF  M     Q +  +  +++S  A+  L  L  G++
Sbjct: 190 DLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCAR--LGDLRLGRK 247

Query: 127 IHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +H +I+ N  ++ D  +G++LV++Y KCGD N A +V   M   +    +++ISG A  G
Sbjct: 248 LHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKG 307

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           +                                 E+L +F KM+R GV  D  TL +VL+
Sbjct: 308 QFK-------------------------------ESLYMFRKMQRLGVKPDDVTLVAVLN 336

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           +C++LG LE GK VH +  +  +  D  + +AL+D Y+K                     
Sbjct: 337 SCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAK--------------------- 375

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     CG I+ A  +F+ M  K + S+ +MIVGL+ +G   +ALDLF  M K+ +
Sbjct: 376 ----------CGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGI 425

Query: 366 RMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGYDALAL 424
             D+ +   V++AC+++  +E G + F  + TI  L         +VD   + G     L
Sbjct: 426 EPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAG-----L 480

Query: 425 FNE----MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCM 479
            NE    +RN  ++P      A+L AC   G V+ G+     MK    I+P  +  Y  M
Sbjct: 481 INEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGE---SVMKKIEKIEPRKDGAYVLM 537

Query: 480 VDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKG 522
            ++++ A    +A+ L + M     E   G  S  L G +    KG
Sbjct: 538 SNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKG 583



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 170/371 (45%), Gaps = 81/371 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC     + +G++LH + ++   +N  + + N L+ MY++CG+   A  +F EM
Sbjct: 229 LVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEM 288

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P +N  SWN+MI G  + G  ++SL +F  M     + +D +   +++  + A+L  LE 
Sbjct: 289 PVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLN--SCANLGVLEL 346

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK +H+++  N +  D  +G++LV++Y KCG  + A  V   M   D +  +A+I G A 
Sbjct: 347 GKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAM 406

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G                               +  +AL LF +M + G+  D  T   V
Sbjct: 407 HG-------------------------------QGGKALDLFSEMPKMGIEPDEVTFVGV 435

Query: 244 LSACSSLGFLEHGK--------------QVHGHACKVGVIDDVIVASALLDTYSK--RGM 287
           L+ACS +G +E G+              Q+  + C V    D++  + L++   +  R M
Sbjct: 436 LTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMV----DLLGRAGLINEAEEFIRNM 491

Query: 288 PSD-----------ACKLFSELKVYDTILLNT-------------MITVYSSCGRIEDAK 323
           P +           ACK+  ++++ ++++                M  +YSS  R  DA 
Sbjct: 492 PIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDAL 551

Query: 324 HIFRTMPNKSL 334
            + +TM  ++L
Sbjct: 552 KLRKTMKERNL 562


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 192/615 (31%), Positives = 292/615 (47%), Gaps = 83/615 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C     +  GK LH  + K  I  ST  ++N    +Y +CG+  +A   F      
Sbjct: 15  LLKACIAQRDLITGKILHALYFKSLIPPSTY-LSNHFTLLYSKCGSLHNAQTSFHLTQYP 73

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGKQIH 128
           N FS+N +I  + K      + ++F+ +PQ +  S+N LI+ +A        L   +++ 
Sbjct: 74  NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVR 133

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGD-FNSANQVLNMMKEPDDFCLS----ALISGYAN 183
              L  GLD     G +L  +   CGD      Q+   +      C +    A+++ Y+ 
Sbjct: 134 E--LRLGLD-----GFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSR 186

Query: 184 CGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
            G +++ARRVF    +      V WN+MI     + E  EA+ LF +M R G+  D  T+
Sbjct: 187 KGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTM 246

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           ASVL+A + +  L  G+Q HG   K G   +  V S L+D YSK                
Sbjct: 247 ASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSK---------------- 290

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE-ALDLFCN 359
                           G + + + +F  +    L+ WN+MI G S      E  L  F  
Sbjct: 291 --------------CAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFRE 336

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG 418
           M +   R D  S   V SAC+N+SS  LG+QV A      +  +++ ++ +LV  Y KCG
Sbjct: 337 MQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCG 396

Query: 419 ---------------------------------YDALALFNEMRNTGVKPTIITFTAILS 445
                                             ++L LF  M    + P  ITF A+LS
Sbjct: 397 NVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLS 456

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H G V+EGQK+F+ MK ++ I+PE EHYSCM+DL  RAG L EA  +IE MPF    
Sbjct: 457 ACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGS 516

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
             W+++L  C  HG+  L  K A   + L+P NA  Y+ LS+++A++  WE+++ ++ +M
Sbjct: 517 IEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLM 576

Query: 566 REKHVGKLPGCSWAD 580
           RE+ V K PGCSW +
Sbjct: 577 RERGVKKKPGCSWIE 591



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 138/315 (43%), Gaps = 43/315 (13%)

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T  ++L AC +   L  GK +H    K  +     +++     YSK G   +A   F  
Sbjct: 10  QTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHL 69

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
            +  +    NT+I  Y+    I  A+ +F  +P   ++S+N++I   +  G     L LF
Sbjct: 70  TQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLF 129

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             + +L L +D F+L+ VI+AC +   + L  Q+   V + G D    ++ +++  Y + 
Sbjct: 130 EEVRELRLGLDGFTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRK 187

Query: 418 GY------------------------------------DALALFNEMRNTGVKPTIITFT 441
           G+                                    +A+ LF EM   G+K  + T  
Sbjct: 188 GFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMA 247

Query: 442 AILSACDHCGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFAR-AGCLNEAVNLIEQM 499
           ++L+A      +  G+++   M K  +H +  +   S ++DL+++ AG + E   + E++
Sbjct: 248 SVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVG--SGLIDLYSKCAGSMVECRKVFEEI 305

Query: 500 PFEADVGMWSSILRG 514
               D+ +W++++ G
Sbjct: 306 T-APDLVLWNTMISG 319


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 173/601 (28%), Positives = 298/601 (49%), Gaps = 105/601 (17%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMPRRNCFSWNA 77
           SI   KQ H   L+  +L++ L  +++L+        G+   A  LF +M   + F  N 
Sbjct: 23  SISKTKQAHALLLRTHLLHNPL-FSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNT 81

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILV 133
           MI G+ +  +  +++ L+  M ++    +++++  +++  A+  L A++ G++ H  +L 
Sbjct: 82  MIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACAR--LGAVKLGRRFHCEVLK 139

Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
           NG       GS L                         F ++ALI  Y NCG    A  V
Sbjct: 140 NGF------GSDL-------------------------FVINALIQFYHNCGSFGCACDV 168

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGF 252
           FD +T    V WN MI+ +++     +A  L  +M + + +  D  T+ S++ AC+ LG 
Sbjct: 169 FDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGN 228

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           LE GK +H ++ ++G+ +++ V +A+LD Y K                            
Sbjct: 229 LERGKFLHSYSKELGLDENLRVNNAILDMYCK---------------------------- 260

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
              C  IE A+ +F  +  K ++SW SM+ GL+++G   EAL LF  M    + +D+ +L
Sbjct: 261 ---CDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITL 317

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
             V+SACA   +L+ G+ +   +    ++ D ++ T+LVD Y KCG              
Sbjct: 318 VGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRV 377

Query: 419 -------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                               DA++LF++M +  + P  +TF A+L AC H GLV EG   
Sbjct: 378 RNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAM 437

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           F AMK ++ I+P +EHY C+VDL  RA  +++A+  IE MP +A+  +W+++L  C + G
Sbjct: 438 FQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGG 497

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579
              L  K+  R+IEL+P++   Y+ LS+++A   +W+ +  +R  M+ K + K PGCSW 
Sbjct: 498 HFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWI 557

Query: 580 D 580
           +
Sbjct: 558 E 558



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 132/496 (26%), Positives = 223/496 (44%), Gaps = 76/496 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++ +G++ H   LK G   S L + N L+Q Y  CG+   A  +FDE   R
Sbjct: 117 VLAACARLGAVKLGRRFHCEVLKNG-FGSDLFVINALIQFYHNCGSFGCACDVFDESTVR 175

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN---MLISGFAKADLAALEYGKQI 127
           +  +WN MI   +  G  EK+  L + M + ++   +   M+    A A L  LE GK +
Sbjct: 176 DVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFL 235

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           HS+    GLD +  + ++++++Y KC D  SA +V N ++E D    ++++SG A     
Sbjct: 236 HSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAK---- 291

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
                                 SGY       EAL LF KM+ N +  D  TL  VLSAC
Sbjct: 292 ----------------------SGYFQ-----EALALFQKMQLNKIELDEITLVGVLSAC 324

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           +  G L+ GK +H    K  +  D+++ +AL+D Y+K                       
Sbjct: 325 AQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAK----------------------- 361

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                   CG I+ A  +FR M  +++ +WN++I GL+ +G   +A+ LF  M    L  
Sbjct: 362 --------CGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMP 413

Query: 368 DKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGY--DALAL 424
           D  +  +++ AC++   ++ G  +F A      ++        +VD  C+     DALA 
Sbjct: 414 DDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAF 473

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLF 483
              + N  +K   + +  +L AC   G     +K     +    ++P+    Y  + +L+
Sbjct: 474 ---IENMPIKANSVLWATLLGACRSGGHFDLAEK---IGRRVIELEPDSCGRYVMLSNLY 527

Query: 484 ARAGCLNEAVNLIEQM 499
           A     + A+ L +QM
Sbjct: 528 AGVSQWDHALKLRKQM 543



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 36/252 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  L+ +C    ++  GK LH +  + G L+  L + N +L MY +C +   A  +F+ +
Sbjct: 216 MVSLVPACAQLGNLERGKFLHSYSKELG-LDENLRVNNAILDMYCKCDDIESAQEVFNRI 274

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-MLISGF--AKADLAALEYG 124
             ++  SW +M+ G  K G+ +++L LF  M Q N    + + + G   A A   AL+ G
Sbjct: 275 REKDVLSWTSMLSGLAKSGYFQEALALFQKM-QLNKIELDEITLVGVLSACAQTGALDQG 333

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K IH  I    ++ D VL ++LV++Y KCG  + A QV   M+  + F  +ALI G A  
Sbjct: 334 KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMH 393

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G   DA  +FD                               +M  + ++ D  T  ++L
Sbjct: 394 GHGEDAISLFD-------------------------------QMEHDKLMPDDVTFIALL 422

Query: 245 SACSSLGFLEHG 256
            ACS  G ++ G
Sbjct: 423 CACSHAGLVDEG 434


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 175/607 (28%), Positives = 288/607 (47%), Gaps = 107/607 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L + C T  ++  GK  H    +  + NS   I N +LQMY  C + T A   FD++  R
Sbjct: 86  LFKMCGTLGALSDGKLFHNRLQR--MANSNKFIDNCILQMYCDCKSFTAAERFFDKIVDR 143

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  SW  +I  + + G  ++++ LF       ++P  + FS   LI  F  AD + L+ G
Sbjct: 144 DLSSWATIISAYTEEGRIDEAVGLFLRMLDLGIIPNFSIFS--TLIMSF--ADPSMLDLG 199

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQIHS ++      D  + + + N+Y KCG  + A    N M        + L+ GY   
Sbjct: 200 KQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAVACTGLMVGYTQA 259

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
            +  D                               ALLLF KM   GV  D    + +L
Sbjct: 260 ARNRD-------------------------------ALLLFSKMISEGVELDGFVFSIIL 288

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC++LG L  GKQ+H +  K+G+  +V V + L+D Y K                    
Sbjct: 289 KACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVK-------------------- 328

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      C R E A+  F ++   +  SW+++I G  Q+G    AL++F  +    
Sbjct: 329 -----------CARFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTIRSKG 377

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           + ++ F   ++  AC+ +S L  G Q+ A     GL +     ++++  Y KCG      
Sbjct: 378 VLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMITMYSKCGKVDYAH 437

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +AL LF EM+ +GV+P ++TF  +L+AC H G
Sbjct: 438 QAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSGVRPNVVTFIGLLNACSHSG 497

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LVKEG+++ D+M  +Y ++P I+HY+CM+D+++RAG L EA+ +I  MPFE DV  W S+
Sbjct: 498 LVKEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLLEALEVIRSMPFEPDVMSWKSL 557

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L GC +  +  +G   A+ +  LDP ++  Y+ + +++A +G+W++++  R +M E+++ 
Sbjct: 558 LGGCWSRRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLR 617

Query: 572 KLPGCSW 578
           K   CSW
Sbjct: 618 KEVSCSW 624


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 261/495 (52%), Gaps = 65/495 (13%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           ALE GK++H HI  +G     V+ + L+ +Y KCG    A +V + M   D    + +++
Sbjct: 100 ALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVN 159

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDAS 238
           GYA  G + +AR++FD  T+  S  W +M++GY+  ++  EAL+L+  M+R      +  
Sbjct: 160 GYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIF 219

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T++  ++A +++  +  GK++HGH  + G+  D ++ S+L+D Y K              
Sbjct: 220 TVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGK-------------- 265

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            CG I++A++IF  +  K ++SW SMI    ++    E   LF 
Sbjct: 266 -----------------CGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFS 308

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            +     R ++++ A V++ACA++++ ELG+QV   +T +G D     S+SLVD Y KCG
Sbjct: 309 ELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCG 368

Query: 419 Y---------------------------------DALALFNEMRNTGVKPTIITFTAILS 445
                                             +AL  F+ +  +G KP  +TF  +LS
Sbjct: 369 NIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLS 428

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV++G ++F ++  ++ +    +HY+C+VDL AR+G   +  ++I +MP +   
Sbjct: 429 ACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSK 488

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +W+S+L GC  +G+  L  + A+ + +++PEN   Y+ +++I+A +G+WE+   +R  M
Sbjct: 489 FLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRM 548

Query: 566 REKHVGKLPGCSWAD 580
           +E  V K PG SW +
Sbjct: 549 QEIGVTKRPGSSWTE 563



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 154/529 (29%), Positives = 246/529 (46%), Gaps = 111/529 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q C+   ++  GK++H H    G +   + I NRLL+MY +CG+  DA  +FDEMP R
Sbjct: 91  LIQVCSQTRALEEGKKVHEHIRTSGFVPGIV-IWNRLLRMYAKCGSLVDARKVFDEMPNR 149

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------------- 117
           +  SWN M+ G+ ++G  E++ +LF+ M +K+ +SW  +++G+ K D             
Sbjct: 150 DLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQ 209

Query: 118 ---------------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
                                +  +  GK+IH HI+  GLD D VL SSL+++YGKCG  
Sbjct: 210 RVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCG-- 267

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
                           C+             ++AR +FD+  +   V W SMI  Y  ++
Sbjct: 268 ----------------CI-------------DEARNIFDKIVEKDVVSWTSMIDRYFKSS 298

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
              E   LF ++  +    +  T A VL+AC+ L   E GKQVHG+  +VG       +S
Sbjct: 299 RWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASS 358

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           +L+D Y+K                               CG IE AKH+    P   L+S
Sbjct: 359 SLVDMYTK-------------------------------CGNIESAKHVVDGCPKPDLVS 387

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           W S+I G +QNG P EAL  F  + K   + D  +  +V+SAC +   +E G + F  +T
Sbjct: 388 WTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSIT 447

Query: 397 ---IIGLDSDQIISTSLVDFYCKCG-YDAL-ALFNEMRNTGVKPTIITFTAILSACDHCG 451
               +   SD    T LVD   + G ++ L ++ +EM    +KP+   + ++L  C   G
Sbjct: 448 EKHRLSHTSDHY--TCLVDLLARSGRFEQLKSVISEM---PMKPSKFLWASVLGGCSTYG 502

Query: 452 LVKEGQKWFDAMKWQYHIDPEIE-HYSCMVDLFARAGCLNEAVNLIEQM 499
            +   +   +A +  + I+PE    Y  M +++A AG   E   + ++M
Sbjct: 503 NIDLAE---EAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRM 548



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 161/334 (48%), Gaps = 40/334 (11%)

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           EA+ L  + ++      AST  +++  CS    LE GK+VH H    G +  +++ + LL
Sbjct: 72  EAVQLLGRAKK----PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLL 127

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
             Y+K G   DA K+F E+   D    N M+  Y+  G +E+A+ +F  M  K   SW +
Sbjct: 128 RMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTA 187

Query: 340 MIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           M+ G  +   P EAL L+  M ++ + R + F+++  ++A A +  +  G+++   +   
Sbjct: 188 MVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRA 247

Query: 399 GLDSDQIISTSLVDFYCKCG---------------------------------YDALALF 425
           GLDSD+++ +SL+D Y KCG                                  +  +LF
Sbjct: 248 GLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLF 307

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
           +E+  +  +P   TF  +L+AC      + G++    M  +   DP     S +VD++ +
Sbjct: 308 SELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMT-RVGFDPYSFASSSLVDMYTK 366

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            G +  A ++++  P + D+  W+S++ GC  +G
Sbjct: 367 CGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNG 399



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 108/236 (45%), Gaps = 14/236 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C    +  +GKQ+H +  + G    +   ++ L+ MY +CGN   A  + D  
Sbjct: 322 FAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFA-SSSLVDMYTKCGNIESAKHVVDGC 380

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--AL 121
           P+ +  SW ++I G  + G  +++L+ F+++     + +  ++  ++S    A L    L
Sbjct: 381 PKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGL 440

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
           E+    +S    + L   S   + LV+L  + G F     V++ M  +P  F  ++++ G
Sbjct: 441 EF---FYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGG 497

Query: 181 ---YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
              Y N     +A +   +    + V + +M + Y +  +  E   +  +M+  GV
Sbjct: 498 CSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGV 553



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
           CG   L    ++     KP   T+  ++  C     ++EG+K  + ++    + P I  +
Sbjct: 65  CGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFV-PGIVIW 123

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           + ++ ++A+ G L +A  + ++MP   D+  W+ ++ G    G     RK+ + M E D
Sbjct: 124 NRLLRMYAKCGSLVDARKVFDEMP-NRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKD 181


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 164/481 (34%), Positives = 257/481 (53%), Gaps = 54/481 (11%)

Query: 146 LVNLYGKCGDFNSANQVLNMMKEPD----DFCLSALI-----SGYANCGKMNDARRVFDR 196
           +V++  KC       Q+   M + +     F +S LI     SG +  G ++ A  VF R
Sbjct: 9   VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVS--GGLDYASSVFSR 66

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKM-----RRNGVLEDASTLASVLSACSSLG 251
               +S ++ ++I G+   +   E+L+L+ +M       +GV     ++ SVL AC  L 
Sbjct: 67  IQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGV---EFSIPSVLKACGKLL 123

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
             + G+QVHG   K  +  D  V ++++  Y   G    A ++F  +   D +  N+MI 
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIA 183

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
            Y   G IE AK +F TM +K +++W SMI    QN  P++ALDLF  M  L LR D  +
Sbjct: 184 GYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPA 243

Query: 372 LASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSLVDFYCKCGY----------- 419
           + SV+SA A++  +E G+ + A V++  ++ S   I ++L+D Y KCGY           
Sbjct: 244 IVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSI 303

Query: 420 -----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +AL +F EM    ++P  ITF  +LS C H GLV+EG
Sbjct: 304 SHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEG 363

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
           Q +F++M  +Y I P I+HY CM+DLF RAG L +A+ +I+ MPFEAD+  W +IL   +
Sbjct: 364 QFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASM 423

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            HG   +G+  A R IEL P+++ +Y+ LS+I+A +G W+  + IR +MR++ V K+ GC
Sbjct: 424 KHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGC 483

Query: 577 S 577
           S
Sbjct: 484 S 484



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 132/479 (27%), Positives = 232/479 (48%), Gaps = 57/479 (11%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLL---QMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           +Q+H   +K  +LN    ++ RL+    +    G    A  +F  +   N F + A+I+G
Sbjct: 23  RQIHAQMIKTNLLNHQFTVS-RLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKG 81

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNM--LISGFAKA--DLAALEYGKQIHSHILVNGLD 137
           F    +  +SL L+  M    ++S  +   I    KA   L A + G+Q+H  +L   L 
Sbjct: 82  FSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLW 141

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
           FD  +G+S+V +Y   G+   A +V + M   D    +++I+GY   G++  A++VF+  
Sbjct: 142 FDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETM 201

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
           +D   V W SMIS Y+ N    +AL LF +M   G+  D   + SVLSA + LGF+E GK
Sbjct: 202 SDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGK 261

Query: 258 QVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
            +H +     + +    + SAL+D YSK                               C
Sbjct: 262 WLHAYVSMNKIELSSGFIGSALIDMYSK-------------------------------C 290

Query: 317 GRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
           G IE+A H+FR++ ++  I  WNSMI GL+ +G   EALD+F  M ++D+  ++ +   +
Sbjct: 291 GYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGL 350

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKCGY--DALALFNEM 428
           +S C++   +E G+  F  +     +  +I+        ++D + + G   DAL +   +
Sbjct: 351 LSTCSHGGLVEEGQFYFESMH----EKYKIVPRIQHYGCMIDLFGRAGRLEDALGV---I 403

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           +N   +  ++ + AILSA    G ++ G+    A++       +   Y  + +++A+AG
Sbjct: 404 QNMPFEADLLAWKAILSASMKHGHIEIGKS--AALRAIELAPDDSSSYVLLSNIYAKAG 460



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 28/244 (11%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMI 79
           +  GK LH +     I  S+  I + L+ MY +CG   +A  +F  +  RRN   WN+MI
Sbjct: 257 VEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMI 316

Query: 80  EGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLA--ALEYGKQIHS-HIL 132
            G    G   ++L +F  M     + N+ ++  L+S  +   L      Y + +H  + +
Sbjct: 317 SGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKI 376

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALIS-----GYANCGK 186
           V  +         +++L+G+ G    A  V+ NM  E D     A++S     G+   GK
Sbjct: 377 VPRIQHYGC----MIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGK 432

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
               R +     D+SS +  S I       +D   + L   MR+ GV +        ++ 
Sbjct: 433 SAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLM--MRQRGVKK--------IAG 482

Query: 247 CSSL 250
           CSS+
Sbjct: 483 CSSM 486


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 164/542 (30%), Positives = 263/542 (48%), Gaps = 71/542 (13%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
           NA +  +MK    E   Q F  M  +N  S N L+SGF   D    + G +I   +LV G
Sbjct: 129 NAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFC--DTETCDQGPRILIQLLVEG 186

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSAN----QVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
            + +     S++      GD N       QV+     PD    ++L++ YA CG  N A 
Sbjct: 187 FEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYAC 246

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
           +VF    +   V W ++I+G+++    +  L +F++M   G   +  T  S+L +CSSL 
Sbjct: 247 KVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLS 305

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
            ++ GKQVH    K  +  +  V +AL+D Y+K                           
Sbjct: 306 DVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRF------------------------ 341

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
                  +EDA+ IF  +  + L +W  ++ G +Q+G   +A+  F  M +  ++ ++F+
Sbjct: 342 -------LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFT 394

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD--- 420
           LAS +S C+ I++L+ G Q+ +     G   D  ++++LVD Y KCG        +D   
Sbjct: 395 LASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLV 454

Query: 421 ----------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                 AL  F  M + G  P  +TF  +LSAC H GL++EG+K
Sbjct: 455 SRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK 514

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
            F+++   Y I P IEHY+CMVD+  RAG  +E  + IE+M   ++V +W ++L  C  H
Sbjct: 515 HFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMH 574

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           G+   G + A ++ EL+PE    YI LS++FA  G W+  + +R +M  + V K PGCSW
Sbjct: 575 GNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSW 634

Query: 579 AD 580
            +
Sbjct: 635 VE 636



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 134/492 (27%), Positives = 234/492 (47%), Gaps = 78/492 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C +   ++ GK +H   +K GI N    + N L+ +Y +CG+   A  +F E+P R
Sbjct: 197 ILKTCASKGDLNEGKAIHGQVIKSGI-NPDSHLWNSLVNVYAKCGSANYACKVFGEIPER 255

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM--LISGFAK-ADLAALEYGKQI 127
           +  SW A+I GF+  G+    L++FN M  +  F+ NM   IS     + L+ ++ GKQ+
Sbjct: 256 DVVSWTALITGFVAEGYG-SGLRIFNQMLAEG-FNPNMYTFISILRSCSSLSDVDLGKQV 313

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H+ I+ N LD +  +G++LV++                               YA    +
Sbjct: 314 HAQIVKNSLDGNDFVGTALVDM-------------------------------YAKNRFL 342

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
            DA  +F+R        W  +++GY  + +  +A+  F +M+R GV  +  TLAS LS C
Sbjct: 343 EDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGC 402

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           S +  L+ G+Q+H  A K G   D+ VASAL+D Y+K G   DA  +F  L   DT+  N
Sbjct: 403 SRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWN 462

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
           T+I  YS  G+   A   F  M ++  +                                
Sbjct: 463 TIICGYSQHGQGGKALKAFEAMLDEGTVP------------------------------- 491

Query: 368 DKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCG--YDALAL 424
           D+ +   V+SAC+++  +E G++ F  ++ I G+         +VD   + G  ++  + 
Sbjct: 492 DEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESF 551

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVDLF 483
             EM+ T     ++ +  +L AC   G ++ G++   AMK  + ++PEI+ +Y  + ++F
Sbjct: 552 IEEMKLT---SNVLIWETVLGACKMHGNIEFGER--AAMKL-FELEPEIDSNYILLSNMF 605

Query: 484 ARAGCLNEAVNL 495
           A  G  ++  N+
Sbjct: 606 AAKGMWDDVTNV 617



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 122/549 (22%), Positives = 229/549 (41%), Gaps = 105/549 (19%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           ++ K++    +K GI   +  + + L+ +Y++C +   A  + +EMP ++   WN  +  
Sbjct: 6   YILKKIIFRVIKNGICPDS-HLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSS 64

Query: 82  FMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
                  ++++QLF +M       N F +  LIS  A A L    YG+ IH+ +   G +
Sbjct: 65  ANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLIS--AAASLGDNHYGESIHACVCKYGFE 122

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            D ++ ++ V +Y K     +  Q    M   +    + L+SG+ +    +   R+  + 
Sbjct: 123 SDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQL 182

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                     ++ G+  N                       T  S+L  C+S G L  GK
Sbjct: 183 ----------LVEGFEPN---------------------MYTFISILKTCASKGDLNEGK 211

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
            +HG   K G+  D  + ++L++ Y+K G  + ACK+F E+                   
Sbjct: 212 AIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEI------------------- 252

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
                       P + ++SW ++I G    G     L +F  M       + ++  S++ 
Sbjct: 253 ------------PERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILR 299

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFN--------- 426
           +C+++S ++LG+QV A++    LD +  + T+LVD Y K  +  DA  +FN         
Sbjct: 300 SCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFA 359

Query: 427 ----------------------EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                                 +M+  GVKP   T  + LS C     +  G++   +M 
Sbjct: 360 WTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMA 418

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
            +     ++   S +VD++A+ GC+ +A  + + +    D   W++I+ G   HG  G  
Sbjct: 419 IKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTIICGYSQHGQGGKA 477

Query: 525 RKVAERMIE 533
            K  E M++
Sbjct: 478 LKAFEAMLD 486



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 4/163 (2%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L  C+   ++  G+QLH   +K G  +  + +A+ L+ MY +CG   DA ++FD +
Sbjct: 395 LASSLSGCSRIATLDSGRQLHSMAIKAG-QSGDMFVASALVDMYAKCGCVEDAEVVFDGL 453

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             R+  SWN +I G+ + G   K+L+ F  M  +      +   G   A   +  +E GK
Sbjct: 454 VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGK 513

Query: 126 Q-IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
           +  +S   + G+       + +V++ G+ G F+     +  MK
Sbjct: 514 KHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK 556


>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
 gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
          Length = 756

 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 164/558 (29%), Positives = 278/558 (49%), Gaps = 51/558 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y + G   DA+ L  EMP  +  SWN+++ G ++     +S+Q F+ MP K+  
Sbjct: 140 NTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLV 199

Query: 105 SWNMLISGFAKA-DL-AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 162
           SWN+++ G+ +A DL  A  +  +I S  +++ ++        LVN Y + G    A ++
Sbjct: 200 SWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVN--------LVNGYCQAGRMGEAREL 251

Query: 163 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 222
            + M E +    + L+SGY    ++  A  +F    + +S+ W +M+SG++ + +  EA 
Sbjct: 252 FDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAK 311

Query: 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
            +  KM  + V    + +   L +      ++  +Q+        V+ D +  + ++  Y
Sbjct: 312 DVLSKMPSDNVGAKTALMHGYLKS----NLIDDARQLFDGI----VVRDAVCWNTMISGY 363

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
            + GM  +A  LF ++   D I  NTMI   +  G+I  A  IFR M  ++ +SWNS+I 
Sbjct: 364 VQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIIS 423

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G  QNG  +EAL  F  M +     D  + A  +SA AN+++L++G Q  + +   G  S
Sbjct: 424 GFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFIS 483

Query: 403 DQIISTSLVDFYCKCGY---------------------------------DALALFNEMR 429
           D     +L+  Y KCG                                  + +A+F EM 
Sbjct: 484 DSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREME 543

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
              V+P  IT   +LSAC H GL+ EG  +F++M   Y + P  EHY+CMVDL  RAG L
Sbjct: 544 ANSVRPDEITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRL 603

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549
            EA  L++ M  + + G+W ++L  C  H +  +    AE++ EL+P  A  Y+ LS+I 
Sbjct: 604 REAFELVQGMQIQPNAGVWGALLGACRVHKNHEIAWLAAEKLFELEPCKASNYVLLSNIC 663

Query: 550 ATSGEWEKSSLIRDIMRE 567
             +G+W+ +  +R +M+E
Sbjct: 664 VEAGKWDDADKVRVLMKE 681



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 212/469 (45%), Gaps = 36/469 (7%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N+ L    R G    A  LF+EMPRRN  S+NAM+      G   ++ +LF+ MP++N 
Sbjct: 14  SNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNP 73

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSS-LVNLYGKCGDFNSANQV 162
            SWN ++       +A  ++G+   +  L + +   +    + +V+ Y + G+   A ++
Sbjct: 74  VSWNTMM-------VACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLAREL 126

Query: 163 LNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221
           L+ M  E    C + +ISGYA  G+  DA  +         V WNS++ G I N E + +
Sbjct: 127 LDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRS 186

Query: 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281
           +  F +M      +D  +   +L      G L+             VI  V     L++ 
Sbjct: 187 VQFFDEMPD----KDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWV----NLVNG 238

Query: 282 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
           Y + G   +A +LF  +   + +  N +++ Y    ++E A ++F  MP K+ ISW +M+
Sbjct: 239 YCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMV 298

Query: 342 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 401
            G  ++G   EA D+   M   ++     +  +++      + ++   Q+F  + +    
Sbjct: 299 SGFVRSGKLQEAKDVLSKMPSDNVG----AKTALMHGYLKSNLIDDARQLFDGIVV---- 350

Query: 402 SDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
            D +   +++  Y +CG   +A+ LF +M N      +I++  +++ C   G +++    
Sbjct: 351 RDAVCWNTMISGYVQCGMLDEAMVLFQQMPNK----DMISWNTMIAGCAQGGQIRKAASI 406

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           F  MK +  +      ++ ++  F + G   EA+     M  +A    W
Sbjct: 407 FRKMKRRNTVS-----WNSIISGFVQNGLFVEALQHFMLMRRDAKSADW 450



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/457 (21%), Positives = 200/457 (43%), Gaps = 49/457 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
           F  N  +    + G    + +LF  MP++N  S+N ++S  A        +G+   +  L
Sbjct: 12  FRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALA-------HHGRLAEARRL 64

Query: 133 VNGLD-FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
            + +   + V  ++++    + G    A  + + M   +++  + ++S Y   G++  AR
Sbjct: 65  FDEMPRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLAR 124

Query: 192 RVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
            + DR   +  +  +N+MISGY  N    +A+ L  +M              ++S  S L
Sbjct: 125 ELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEM----------PAPDIVSWNSVL 174

Query: 251 GFLEHGKQVHGHACKVGVID-----DVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           G L   +++   +  V   D     D++  + +L+ Y + G    A   FS +   + I 
Sbjct: 175 GGLIRNEEI---SRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVIS 231

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
              ++  Y   GR+ +A+ +F  MP +++++WN ++ G  Q      A +LF  M +   
Sbjct: 232 WVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPE--- 288

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCGY--DAL 422
             +  S  +++S       L+  + V ++     + SD +   T+L+  Y K     DA 
Sbjct: 289 -KNSISWTTMVSGFVRSGKLQEAKDVLSK-----MPSDNVGAKTALMHGYLKSNLIDDAR 342

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LF+ +    V    + +  ++S    CG++ E    F  M      + ++  ++ M+  
Sbjct: 343 QLFDGI----VVRDAVCWNTMISGYVQCGMLDEAMVLFQQMP-----NKDMISWNTMIAG 393

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            A+ G + +A ++  +M     V  W+SI+ G V +G
Sbjct: 394 CAQGGQIRKAASIFRKMKRRNTVS-WNSIISGFVQNG 429



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 145/323 (44%), Gaps = 47/323 (14%)

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L + ++ G  + A +LF E+   + +  N M++  +  GR+ +A+ +F  MP ++ +SWN
Sbjct: 18  LTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPVSWN 77

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           +M+V  SQ+G   +A  LF  M       +++S   ++S       L L  ++  R+   
Sbjct: 78  TMMVACSQHGRVEDARGLFDAMPA----RNEYSWTIMVSCYVRAGELTLARELLDRMP-- 131

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
           G       +T ++  Y K G   DA+AL  EM      P I+++ ++L        +   
Sbjct: 132 GEKCAACYNT-MISGYAKNGRFEDAIALLQEM----PAPDIVSWNSVLGGLIRNEEISRS 186

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            ++FD M      D ++  ++ M++ + RAG L+ A     ++P   +V  W +++ G  
Sbjct: 187 VQFFDEMP-----DKDLVSWNLMLEGYVRAGDLDVASAFFSRIP-SPNVISWVNLVNGYC 240

Query: 517 AHGDKGLGRKVAERM----------------------------IELDPENACAYIQLSSI 548
             G  G  R++ +RM                            IE+  +N+ ++  + S 
Sbjct: 241 QAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSG 300

Query: 549 FATSGEWEKSSLIRDIMREKHVG 571
           F  SG+ +++  +   M   +VG
Sbjct: 301 FVRSGKLQEAKDVLSKMPSDNVG 323


>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 170/559 (30%), Positives = 271/559 (48%), Gaps = 99/559 (17%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA----------LEYGK 125
           N  ++  +K GH   + ++F+ M QK++ SW  LISG+  A+ ++          +E G 
Sbjct: 60  NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGL 119

Query: 126 QIHSHIL-----VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           +I   IL       GL+ D   G  L     K G  NS             F  SAL+  
Sbjct: 120 RIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSV------------FVGSALLDM 167

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y   GK+ + RRVF      + V W ++I+G +    + EAL+ F +M R+ V  D+ T 
Sbjct: 168 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 227

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A  L AC+  G L +G+++H  A K G   DV                            
Sbjct: 228 AIALKACADSGALNYGREIHAQAMKKGF--DV---------------------------- 257

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
             + + NT+ T+Y+ CG++E    +F  M  + ++SW ++I  L Q G    A+  F  M
Sbjct: 258 -SSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRM 316

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
            + D+  ++++ A+VIS CAN++ +E GEQ+ A +  +GL +   +  S++  Y KCG  
Sbjct: 317 RESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQL 376

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A  L + MR  G KPT     ++LSAC
Sbjct: 377 TSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSAC 436

Query: 448 DHCGLVKEGQKW--------FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
            +  +++ G++          +    +Y I P  EHY CM+DL  RAG L++A ++IE M
Sbjct: 437 GNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAM 496

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           PF  D  +WS++LR C  HGD   GR+ AER+++L+P  A  +I L++I+A+ G+W +++
Sbjct: 497 PFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAA 556

Query: 560 LIRDIMREKHVGKLPGCSW 578
            IR +M+ K V K PG SW
Sbjct: 557 DIRKLMKSKGVIKEPGWSW 575



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 234/501 (46%), Gaps = 83/501 (16%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C  +  ++ G+ LH + +K G++NS   + + LL MY + G   +   +F EMP RN 
Sbjct: 131 KACGLNSDVNYGELLHGYAVKTGLVNSVF-VGSALLDMYTKNGKIFEGRRVFHEMPMRNV 189

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDF-SWNMLISGFAKADLAALEYGKQIHSH 130
            SW A+I G ++ G+ +++L  F+ M   + ++ S+   I+  A AD  AL YG++IH+ 
Sbjct: 190 VSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQ 249

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +  G D  S + ++L  +Y K                               CGK+   
Sbjct: 250 AMKKGFDVSSFVANTLATMYNK-------------------------------CGKLEYG 278

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
             +F++ +    V W ++I+  +   ++  A+  F +MR + V  +  T A+V+S C++L
Sbjct: 279 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 338

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             +E G+Q+H     +G+   + V ++++  Y+K G  + +  +F E+   D +  +T+I
Sbjct: 339 ARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTII 398

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
             YS  G + +A           L+SW  M     +   P E                 F
Sbjct: 399 AGYSQGGHVSEAFE---------LLSWMRM-----EGPKPTE-----------------F 427

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQI---ISTS------LVDFYCKCGY-- 419
           +LASV+SAC N++ LE G+Q+ A V  IGL+   +   IS S      ++D  C+ G   
Sbjct: 428 ALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLS 487

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSC 478
           DA  +   M         + ++ +L AC   G V+ G++  + +     ++P     +  
Sbjct: 488 DAEHMIEAM---PFHRDDVVWSTLLRACRVHGDVERGRRTAERI---LQLEPNCAGTHIT 541

Query: 479 MVDLFARAGCLNEAVNLIEQM 499
           + +++A  G   EA ++ + M
Sbjct: 542 LANIYASKGKWREAADIRKLM 562



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 166/348 (47%), Gaps = 65/348 (18%)

Query: 3   TRIDY----LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +R++Y     A  L++C    +++ G+++H   +KKG   S+  +AN L  MY +CG   
Sbjct: 218 SRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSF-VANTLATMYNKCGKLE 276

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFA 114
             L LF++M  R+  SW  +I   +++G +E ++Q F  M +     N++++  +ISG  
Sbjct: 277 YGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGC- 335

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            A+LA +E+G+Q+H+ IL  GL     + +S++ +Y KCG   S++ + + M   D    
Sbjct: 336 -ANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSW 394

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           S +I+GY+  G +                               +EA  L   MR  G  
Sbjct: 395 STIIAGYSQGGHV-------------------------------SEAFELLSWMRMEGPK 423

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
                LASVLSAC ++  LEHGKQ+H +   +G           L+  + +   S + + 
Sbjct: 424 PTEFALASVLSACGNMAILEHGKQLHAYVLSIG-----------LEHTAMKYQISPSKEH 472

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMI 341
           +             MI +    GR+ DA+H+   MP ++  + W++++
Sbjct: 473 Y-----------GCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 509



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 20/246 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++  C     I  G+QLH   L  G L ++L + N ++ MY +CG  T + ++F EM
Sbjct: 328 FAAVISGCANLARIEWGEQLHALILHLG-LAASLSVENSIMTMYAKCGQLTSSSVIFHEM 386

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
            RR+  SW+ +I G+ + GH  ++ +L + M    P+  +F+   ++S  A  ++A LE+
Sbjct: 387 TRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLS--ACGNMAILEH 444

Query: 124 GKQIHSHILVNGLDFDSV---LGSS------LVNLYGKCGDFNSANQVLNMMK-EPDDFC 173
           GKQ+H+++L  GL+  ++   +  S      +++L  + G  + A  ++  M    DD  
Sbjct: 445 GKQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVV 504

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS---GYISNNEDTEALLLFHKMRR 230
            S L+      G +   RR  +R          + I+    Y S  +  EA  +   M+ 
Sbjct: 505 WSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKS 564

Query: 231 NGVLED 236
            GV+++
Sbjct: 565 KGVIKE 570


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 195/623 (31%), Positives = 298/623 (47%), Gaps = 99/623 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL        +  GK LH  ++K  + +ST  ++N  + +Y +CG  + A   F      
Sbjct: 14  LLLKSVAERDLFTGKSLHALYVKSIVASSTY-LSNHFVNLYSKCGRLSYARAAFYSTEEP 72

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           N FS+N +++ + K      + QLF+ +PQ +  S+N LISG+A A    AA+   K++ 
Sbjct: 73  NVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMR 132

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-----------AL 177
                  L F+ V G +L  L   C D       ++++K+   F +S           A 
Sbjct: 133 K------LGFE-VDGFTLSGLIAACCD------RVDLIKQLHCFSVSGGFDSYSSVNNAF 179

Query: 178 ISGYANCGKMNDARRVF---DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           ++ Y+  G + +A  VF   D   D   V WNSMI  Y  + E  +AL L+ +M   G  
Sbjct: 180 VTYYSKGGLLREAVSVFYGMDELRD--EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFK 237

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS---DA 291
            D  TLASVL+A +SL  L  G+Q HG   K G   +  V S L+D YSK G      D+
Sbjct: 238 IDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDS 297

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
            K+F E+   D ++ NTMI+ Y                         SM   LS+     
Sbjct: 298 EKVFQEILSPDLVVWNTMISGY-------------------------SMNEELSE----- 327

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSL 410
           EA+  F  M ++  R D  S   V SAC+N+SS    +Q+        + S++I ++ +L
Sbjct: 328 EAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNAL 387

Query: 411 VDFYCKC---------------------------------GYDALALFNEMRNTGVKPTI 437
           +  Y K                                  G +AL L+  M ++G+ P  
Sbjct: 388 ISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNK 447

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           ITF A+LSAC HCG V EGQ++F+ MK  + I+PE EHYSCM+DL  RAG L EA   I+
Sbjct: 448 ITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFID 507

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
            MP++     W+++L  C  H +  L  + A  ++ + P  A  Y+ L++++A + +WE+
Sbjct: 508 AMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEE 567

Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
            + +R  MR K + K PGCSW +
Sbjct: 568 MASVRKSMRGKRIRKKPGCSWIE 590



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 227/514 (44%), Gaps = 82/514 (15%)

Query: 96  NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155
           N  P K     ++L+   A+ DL     GK +H+  + + +   + L +  VNLY KCG 
Sbjct: 2   NQTPWKFKTFRDLLLKSVAERDLFT---GKSLHALYVKSIVASSTYLSNHFVNLYSKCGR 58

Query: 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 215
            + A       +EP+ F  + ++  YA   K++ AR++FD      +V +N++ISGY   
Sbjct: 59  LSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADA 118

Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
            E   A++LF +MR+ G   D  TL+ +++AC     ++  KQ+H  +   G        
Sbjct: 119 RETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDR--VDLIKQLHCFSVSGG-------- 168

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSL 334
               D+YS                     + N  +T YS  G + +A  +F  M   +  
Sbjct: 169 ---FDSYSS--------------------VNNAFVTYYSKGGLLREAVSVFYGMDELRDE 205

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
           +SWNSMIV   Q+    +AL L+  M     ++D F+LASV++A  ++  L  G Q   +
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 395 VTIIGLDSDQIISTSLVDFYCKCG-----YDALALFNE---------------------- 427
           +   G   +  + + L+DFY KCG     YD+  +F E                      
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEEL 325

Query: 428 ----------MRNTGVKPTIITFTAILSACDHCGLVKEGQ-KWFDAMKWQYHIDP-EIEH 475
                     M+  G +P   +F  + SAC +  L    Q K    +  + HI    I  
Sbjct: 326 SEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN--LSSPSQCKQIHGLAIKSHIPSNRISV 383

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE-- 533
            + ++ L+ ++G L +A  + ++MP E +   ++ +++G   HG       + +RM++  
Sbjct: 384 NNALISLYYKSGNLQDARWVFDRMP-ELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSG 442

Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           + P N   ++ + S  A  G+ ++     + M+E
Sbjct: 443 IAP-NKITFVAVLSACAHCGKVDEGQEYFNTMKE 475



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 154/343 (44%), Gaps = 72/343 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN---PTDALLLF 64
           LA +L +  +   +  G+Q H   +K G   ++  + + L+  Y +CG      D+  +F
Sbjct: 243 LASVLNALTSLDHLIGGRQFHGKLIKAGFHQNS-HVGSGLIDFYSKCGGCDGMYDSEKVF 301

Query: 65  DEMPRRNCFSWNAMIEGF-MKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLA 119
            E+   +   WN MI G+ M     E++++ F  M +     +D S+  + S  A ++L+
Sbjct: 302 QEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS--ACSNLS 359

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +    KQIH      GL   S + S+ +++                         +ALIS
Sbjct: 360 SPSQCKQIH------GLAIKSHIPSNRISVN------------------------NALIS 389

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            Y   G + DAR VFDR  + ++V +N MI GY  +   TEALLL+ +M  +G+  +  T
Sbjct: 390 LYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKIT 449

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             +VLSAC+  G ++ G++                 + + +T+          K+  E +
Sbjct: 450 FVAVLSACAHCGKVDEGQEYF---------------NTMKETF----------KIEPEAE 484

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMI 341
            Y     + MI +    G++E+A+     MP K   ++W +++
Sbjct: 485 HY-----SCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALL 522


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 191/629 (30%), Positives = 293/629 (46%), Gaps = 90/629 (14%)

Query: 7   YLARLLQSCNTHHS-IHVGK----QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           Y    LQSC+  HS I  G      LH   +K G L  TL  AN LL +Y++  N   A 
Sbjct: 286 YPPLWLQSCSLFHSTISNGPPPLGTLHALSVKNGSLQ-TLNSANYLLTLYVKSSNMDHAR 344

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DL 118
            LFDE+P+RN  +W  +I GF + G  E   +LF  M  K        +S   K    D+
Sbjct: 345 KLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDI 404

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L+ GK +H+ +L NG+D D VLG+S+++LY KC  F  A +V  +M E D    + +I
Sbjct: 405 N-LQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMI 463

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           S Y   G +  +  +F R      V WN+++ G +    + +AL   + M   G      
Sbjct: 464 SAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVV 523

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T +  L   SSL  +E G+Q+HG   K G   D  + S+L++ Y K              
Sbjct: 524 TFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCK-------------- 569

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMP----------------NKSLISWNSMIV 342
                            CGR+++A  + + +P                   ++SW  M+ 
Sbjct: 570 -----------------CGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVS 612

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G   NG   + L  F  M +  + +D  ++ ++ISACAN   LE G  V A    IG   
Sbjct: 613 GYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRI 672

Query: 403 DQIISTSLVDFYCKCG---------------------------------YDALALFNEMR 429
           D  + +SL+D Y K G                                   A+ LF EM 
Sbjct: 673 DAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEML 732

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
           N G+ P  +TF  +L+AC H GL++EG ++F  MK  Y I+P +EH + MVDL+ RAG L
Sbjct: 733 NQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHL 792

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549
            E  N I +        +W S L  C  H +  +G+ V+E ++++ P +  AY+ LS++ 
Sbjct: 793 TETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMC 852

Query: 550 ATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           A++  W++++ +R +M ++ + K PG SW
Sbjct: 853 ASNHRWDEAARVRSLMHQRGIKKQPGQSW 881


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 183/637 (28%), Positives = 299/637 (46%), Gaps = 109/637 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +  + +T      G+Q H   +K    +     A+ LL MY + G   +A  LFDEM
Sbjct: 119 LTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFA-ASSLLNMYCKTGLVFEARDLFDEM 177

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAAL 121
           P RN  SW  MI G+      +++ +LF +M        +N+F +  ++S      L  +
Sbjct: 178 PERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYML--V 235

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             G+Q+HS  + NGL    V   S+ N                           AL++ Y
Sbjct: 236 NTGRQVHSLAMKNGL----VCIVSVAN---------------------------ALVTMY 264

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
             CG + DA + F+ + + +S+ W++M++G+    +  +AL LF+ M ++G L    TL 
Sbjct: 265 VKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLV 324

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            V++ACS    +  G+Q+HG++ K+G                             EL++Y
Sbjct: 325 GVINACSDACAIVEGRQMHGYSLKLGY----------------------------ELQLY 356

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
              +L+ ++ +Y+ CG I DA+  F  +    ++ W S+I G  QNG    AL+L+  M 
Sbjct: 357 ---VLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQ 413

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
              +  +  ++ASV+ AC+N+++L+ G+Q+ A +       +  I ++L   Y KCG   
Sbjct: 414 LGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLD 473

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                          + L LF +M   G KP  +TF  +LSAC 
Sbjct: 474 DGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACS 533

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV  G  +F  M  +++I P +EHY+CMVD+ +RAG L+EA   IE    +  + +W
Sbjct: 534 HMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIESATVDHGLCLW 593

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
             +L     H D  LG    E+++EL    + AY+ LSSI+   G+WE    +R +M+ +
Sbjct: 594 RILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWEDVERVRGMMKAR 653

Query: 569 HVGKLPGCSWADGIAFNCWFL--DTMFLQLANFDEIK 603
            V K PGCSW +  +    F+  D M  Q+   DEI+
Sbjct: 654 GVTKEPGCSWIELKSLTHVFVVGDNMHPQI---DEIR 687



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 148/564 (26%), Positives = 238/564 (42%), Gaps = 107/564 (18%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           R L  C  H  +  G+ LH   L  G  +ST  IAN L+ +Y +C + + A L+FD +  
Sbjct: 15  RALVHCTRHKQLRKGRALHARILVTGSFSST-QIANSLINLYAKCSHFSKANLVFDSINN 73

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFN-----VMPQKNDFSWNMLISGF--AKADLAALE 122
           ++  SWN +I  F +      SL + +     VM  K        ++G   A + L+   
Sbjct: 74  KDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSR 133

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+Q H+  +      D    SSL+N+Y K G    A  + + M E +    + +ISGYA
Sbjct: 134 AGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYA 193

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR--RNGVLEDASTL 240
                                          S     EA  LF  MR    G  E+    
Sbjct: 194 -------------------------------SQELADEAFELFKLMRHEEKGKNENEFVF 222

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SVLSA +    +  G+QVH  A K G++  V VA+AL+  Y K                
Sbjct: 223 TSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVK---------------- 266

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                          CG +EDA   F    NK+ I+W++M+ G +Q G   +AL LF +M
Sbjct: 267 ---------------CGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDM 311

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
           ++      +F+L  VI+AC++  ++  G Q+      +G +    + ++LVD Y KCG  
Sbjct: 312 HQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSI 371

Query: 419 ------------------------------YD-ALALFNEMRNTGVKPTIITFTAILSAC 447
                                         Y+ AL L+ +M+  GV P  +T  ++L AC
Sbjct: 372 VDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKAC 431

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            +   + +G K   A   +Y+   EI   S +  ++A+ G L++   +  +MP   DV  
Sbjct: 432 SNLAALDQG-KQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPAR-DVIS 489

Query: 508 WSSILRGCVAHGDKGLGRKVAERM 531
           W++++ G   +G    G ++ E+M
Sbjct: 490 WNAMISGLSQNGRGNEGLELFEKM 513


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 160/577 (27%), Positives = 269/577 (46%), Gaps = 94/577 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y   G P +A  LFDEM  RN  SWN ++ G++K     ++  +F +MP++N  
Sbjct: 52  NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111

Query: 105 SWNMLISGFAKADLAA--------LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
           SW  ++ G+ +  +          +    ++   ++  GL  D              G  
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDD--------------GRI 157

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
           + A ++ +MM   D    + +I G    G++++AR +FD   + + V W +MI+GY  NN
Sbjct: 158 DKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNN 217

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
               A  LF       V+ + + ++                                  +
Sbjct: 218 RVDVARKLFE------VMPEKTEVS---------------------------------WT 238

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           ++L  Y+  G   DA + F  + +   I  N MI  +   G I  A+ +F  M ++   +
Sbjct: 239 SMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNAT 298

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           W  MI    + G  +EALDLF  M K  +R    SL S++S CA ++SL+ G QV A + 
Sbjct: 299 WRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLV 358

Query: 397 IIGLDSDQIISTSLVDFYCKCGY---------------------------------DALA 423
               D D  +++ L+  Y KCG                                  +AL 
Sbjct: 359 RCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALK 418

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
           +F+EM ++G  P  +T  AIL+AC + G ++EG + F++M+ ++ + P +EHYSC VD+ 
Sbjct: 419 IFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDML 478

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543
            RAG +++A+ LIE M  + D  +W ++L  C  H    L    A+++ E +P+NA  Y+
Sbjct: 479 GRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYV 538

Query: 544 QLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            LSSI A+  +W   +++R  MR  +V K PGCSW +
Sbjct: 539 LLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIE 575



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 120/261 (45%), Gaps = 21/261 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C T  S+  G+Q+H H ++    +  + +A+ L+ MY++CG    A L+FD  
Sbjct: 334 LISILSVCATLASLQYGRQVHAHLVRCQ-FDDDVYVASVLMTMYVKCGELVKAKLVFDRF 392

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-LISGFAKADLAA-LEYGK 125
             ++   WN++I G+   G  E++L++F+ MP        + LI+       A  LE G 
Sbjct: 393 SSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGL 452

Query: 126 QIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYAN 183
           +I   +        +V   S  V++ G+ G  + A +++  M  +PD     AL+     
Sbjct: 453 EIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKT 512

Query: 184 CGKMN----DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
             +++     A+++F+   D +   +  + S   S ++  +  ++   MR N V      
Sbjct: 513 HSRLDLAEVAAKKLFENEPDNAGT-YVLLSSINASRSKWGDVAVVRKNMRTNNV------ 565

Query: 240 LASVLSACSSLGFLEHGKQVH 260
             S    CS   ++E GK+VH
Sbjct: 566 --SKFPGCS---WIEVGKKVH 581


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 176/616 (28%), Positives = 287/616 (46%), Gaps = 112/616 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    S+   + LH H +K G  ++ + +A  L+  YMRCG   DA  LFD+MP +
Sbjct: 84  LLHVCVETGSLGGARALHGHMVKTGT-SADMFVATSLVNAYMRCGASQDARSLFDQMPEK 142

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIH 128
           N  +W A+I G+       ++L++F  M +   +  +  +     A  A+   + G Q+H
Sbjct: 143 NVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVH 202

Query: 129 SH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
            + I    L   S+ G+SL  +Y K G   SA                            
Sbjct: 203 GYTIKYRALSITSI-GNSLCRMYAKSGSLESA---------------------------- 233

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTE-ALLLFHKMRRNGVLEDASTLASVLSA 246
               R F    D + + W +MIS    +   TE  L LF  M  +GVL +  TL SV+S 
Sbjct: 234 ---MRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSL 290

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C +   L  GKQV     K+G   ++ V                                
Sbjct: 291 CGTRLDLNLGKQVQAFCFKIGCQTNIPVK------------------------------- 319

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-----------NGSPIEALD 355
           N+ + +Y   G  ++A   F  M + S+I+WN+MI G +Q                +AL 
Sbjct: 320 NSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALK 379

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           +F N+ +  ++ D F+ +S++S C+++ +LE GEQ+ A+    G  SD +++++LV+ Y 
Sbjct: 380 VFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYN 439

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                  +A+ LF +MR  GV+P  ITF  
Sbjct: 440 KCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVC 499

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC + GL ++ + +FD MK +Y I+P ++HY CMVD+F R G L++A   I +  FE
Sbjct: 500 VLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFE 559

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
            +  +WSS++ GC +HG+  L    A+R+IEL P+    Y+ L +++ ++  W   + +R
Sbjct: 560 PNEAIWSSLVAGCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISNERWHDVARVR 619

Query: 563 DIMREKHVGKLPGCSW 578
            +M+++ +G L   SW
Sbjct: 620 KLMKQEGLGVLMDRSW 635



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 120/506 (23%), Positives = 222/506 (43%), Gaps = 87/506 (17%)

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM----KEPD 170
           +A L  L+ G+ +   +L  G    S +   L+++  + G    A  +   M       D
Sbjct: 55  EAPLRPLDVGEAMA--MLREGKTVQSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSAD 112

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
            F  ++L++ Y  CG   DAR +FD+  + + V W ++I+GY  N++  EAL +F +M  
Sbjct: 113 MFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLE 172

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
            G      TL ++L+ACS+    + G QVHG+  K   +    + ++L   Y+K      
Sbjct: 173 AGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAK------ 226

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
                                     G +E A   FR +P+K++I+W +MI   +++ + 
Sbjct: 227 -------------------------SGSLESAMRAFRMVPDKNVITWTTMISACAEDENY 261

Query: 351 IE-ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD------ 403
            E  L LF +M    +  ++F+L SV+S C     L LG+QV A    IG  ++      
Sbjct: 262 TELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNS 321

Query: 404 -------------------------------------QIISTSLVDFYCKC-GYDALALF 425
                                                QI+ T+  D + +  G+ AL +F
Sbjct: 322 TMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVF 381

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
             ++ + +KP + TF++ILS C     +++G++   A   +     ++   S +V+++ +
Sbjct: 382 RNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQ-IHAQTIKTGFLSDVVVNSALVNMYNK 440

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE--RMIELDPENACAYI 543
            GC+ +A     +M     V  W+S++ G   HG      ++ E  R   + P N   ++
Sbjct: 441 CGCIEDATKAFVEMSIRTLV-TWTSMISGYSQHGRPQEAIQLFEDMRFAGVRP-NEITFV 498

Query: 544 QLSSIFATSGEWEKSSLIRDIMREKH 569
            + S  + +G  EK+    D+M+E++
Sbjct: 499 CVLSACSYAGLAEKAEHYFDMMKEEY 524



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 204/460 (44%), Gaps = 81/460 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+  ++  +G Q+H + +K   L+ T  I N L +MY + G+   A+  F  +
Sbjct: 182 LGAMLNACSASNNADLGSQVHGYTIKYRALSIT-SIGNSLCRMYAKSGSLESAMRAFRMV 240

Query: 68  PRRNCFSWNAMI------EGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAK 115
           P +N  +W  MI      E + +LG     L LF       V+P +   +  M + G  +
Sbjct: 241 PDKNVITWTTMISACAEDENYTELG-----LTLFLDMLMDGVLPNEFTLTSVMSLCG-TR 294

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
            D   L  GKQ+ +     G   +  + +S + LY + G+ + A +    M +      +
Sbjct: 295 LD---LNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWN 351

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           A+ISGYA             +  +T+    ++   G+       +AL +F  ++R+ +  
Sbjct: 352 AMISGYA-------------QIMETAKDDLHARSRGF-------QALKVFRNLKRSAMKP 391

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  T +S+LS CSS+  LE G+Q+H    K G + DV+V SAL++ Y+K G   DA K F
Sbjct: 392 DLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAF 451

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            E+ +   +   +MI+ YS  GR                               P EA+ 
Sbjct: 452 VEMSIRTLVTWTSMISGYSQHGR-------------------------------PQEAIQ 480

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS--TSLVDF 413
           LF +M    +R ++ +   V+SAC+     E  E  F  +       + I+     +VD 
Sbjct: 481 LFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEHYFDMMK-EEYKIEPIVDHYGCMVDM 539

Query: 414 YCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
           + + G   DA A    +R TG +P    ++++++ C   G
Sbjct: 540 FVRLGRLDDAFAF---IRRTGFEPNEAIWSSLVAGCRSHG 576



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 84/221 (38%), Gaps = 43/221 (19%)

Query: 336 SWNSMIVGLSQNGS----PIEALDLFCNMNKL--DLRMDKFSLASVISACANISSLELGE 389
           +WN   +  +QNGS    P+  LD+   M  L     +       ++  C    SL    
Sbjct: 39  NWNGRSIQAAQNGSTMEAPLRPLDVGEAMAMLREGKTVQSAMYVPLLHVCVETGSLGGAR 98

Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------------- 418
            +   +   G  +D  ++TSLV+ Y +CG                               
Sbjct: 99  ALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNS 158

Query: 419 --YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEH 475
              +AL +F EM   G  P+  T  A+L+AC        G +     +K++      I +
Sbjct: 159 QLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGN 218

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             C   ++A++G L  A+     +P + +V  W++++  C 
Sbjct: 219 SLC--RMYAKSGSLESAMRAFRMVP-DKNVITWTTMISACA 256


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 175/615 (28%), Positives = 288/615 (46%), Gaps = 110/615 (17%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ ++A +L +C+   ++  G+++H   L +        +A  L+ MY +CG+ ++A L+
Sbjct: 437 KVSFIA-ILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELV 495

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY 123
           F EMP                             +P ++  +WN+++  +A+ D +   +
Sbjct: 496 FKEMP-----------------------------LPSRSLVTWNVMLGAYAQNDRSKEAF 526

Query: 124 G---KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF---CL-SA 176
           G   + +   +L + L F SVL S   +            QVL M      +   CL +A
Sbjct: 527 GALMEMLQGGVLPDALSFTSVLSSCYCS---------QEAQVLRMCILESGYRSACLETA 577

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LIS +  C ++  AR VF+       V W +M+S    N +  E   LF +M+  GV+ D
Sbjct: 578 LISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPD 637

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             TLA+ L  C +   L  GK +H    ++G+  D+ V +ALL+                
Sbjct: 638 KFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLN---------------- 681

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                          +YS+CG   +A   F TM  + L+SWN M    +Q G   EA+ L
Sbjct: 682 ---------------MYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLL 726

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    ++ DK + ++ ++     + +  G+   A     GLDSD  ++T LV  Y K
Sbjct: 727 FRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKLYAK 786

Query: 417 CGY---------------------------------DALALFNEMRNTGVKPTIITFTAI 443
           CG                                  +A+ +F +M+  GV+P + T  +I
Sbjct: 787 CGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSI 846

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           +SAC H G+V+EG   F  MK  + I P +EHY+C VDL  RAG L  A  +I +MPFE 
Sbjct: 847 ISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFED 906

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           +  +W+S+L  C   GD  LG + A+R++ELDP N+ A++ LS+I+  +G+W+ + + R 
Sbjct: 907 NTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRK 966

Query: 564 IMREKHVGKLPGCSW 578
            M +++V   PG SW
Sbjct: 967 KMLDENVKNAPGMSW 981



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 132/567 (23%), Positives = 233/567 (41%), Gaps = 123/567 (21%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           +Y A LLQSC   + +  GK  H   +    L   L + N L+ MY+RCG+  +A  +F 
Sbjct: 27  EYTA-LLQSCVDSNDLAKGKHAH-ELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFS 84

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAKA-DLA 119
           +M  RN  SW A+I    + G   ++  LF  M        N ++   +++  A + DLA
Sbjct: 85  KMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLA 144

Query: 120 ALEYGKQIHSHILVNGLDFDS----VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
               G+ IH+ I   GL+  S    ++G++++N+Y KCG    A  V   + E D    +
Sbjct: 145 ---IGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWT 201

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           A+   YA        RR +                         +AL +F +M    +  
Sbjct: 202 AMAGAYAQ------ERRFY------------------------PDALRIFREMLLQPLAP 231

Query: 236 DASTLASVLSACSSLGFLEHGKQVHG--HACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           +  T  + L AC+S   L  G  +H   H   +G                          
Sbjct: 232 NVITFITALGACTS---LRDGTWLHSLLHEASLG-------------------------- 262

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSP 350
                  +D +  N +I +Y  CG  E A  +F+ M ++    L+SWN+MI    + G  
Sbjct: 263 -------FDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRH 315

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG--EQVFARVTIIGLDSDQIIST 408
            +A+ +F  +    +R +  +L ++++A A  S ++ G       R+   G   D +I  
Sbjct: 316 GDAMAIFRRLRLEGMRPNSVTLITILNALA-ASGVDFGAARGFHGRIWESGYLRDVVIGN 374

Query: 409 SLVDFYCKCGY--DALALFNEMR--------NT------------------------GVK 434
           +++  Y KCG+   A A+F  +R        NT                        G+ 
Sbjct: 375 AIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGID 434

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P  ++F AIL+AC +   +  G+K    +  +     E    + +V ++ + G ++EA  
Sbjct: 435 PNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAEL 494

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDK 521
           + ++MP  +   +  +++ G  A  D+
Sbjct: 495 VFKEMPLPSRSLVTWNVMLGAYAQNDR 521



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 133/641 (20%), Positives = 253/641 (39%), Gaps = 148/641 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLF 64
           L  +L +C     + +G+ +H    + G+  ++     + N ++ MY +CG+  DA+ +F
Sbjct: 130 LVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVF 189

Query: 65  DEMPRRNCFSWNAMIEGFMKLGH-KEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY 123
             +P ++  SW AM   + +       +L++F  M  +   + N++    A     +L  
Sbjct: 190 LAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQ-PLAPNVITFITALGACTSLRD 248

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM---KEPDDFCLSALISG 180
           G  +HS +    L FD +  ++L+N+YGKCGD+  A  V   M   +E D    +A+IS 
Sbjct: 249 GTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISA 308

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
               G+  D                               A+ +F ++R  G+  ++ TL
Sbjct: 309 SVEAGRHGD-------------------------------AMAIFRRLRLEGMRPNSVTL 337

Query: 241 ASVLSACSSLGF-LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            ++L+A ++ G      +  HG   + G + DV++ +A++  Y+K               
Sbjct: 338 ITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAK--------------- 382

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFC 358
                           CG    A  +FR +  K  +ISWN+M+       S  + ++ F 
Sbjct: 383 ----------------CGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFH 426

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSLVDFYCKC 417
           +M    +  +K S  ++++AC+N  +L+ G ++ + +     D  +  ++T LV  Y KC
Sbjct: 427 HMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKC 486

Query: 418 G-----------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           G                                    +A     EM   GV P  ++FT+
Sbjct: 487 GSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTS 546

Query: 443 ILSAC-------------------------------DHCGLVKEGQKWFDAMKWQYHIDP 471
           +LS+C                                 C  +++ +  F+ M    H D 
Sbjct: 547 VLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFNEMD---HGD- 602

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHGDKGLGRKVA 528
            +  ++ MV   A      E  NL  +M  E    D    ++ L  C+A    GLG+ + 
Sbjct: 603 -VVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIH 661

Query: 529 ERMIELDPENACAYIQ-LSSIFATSGEWEKSSLIRDIMREK 568
             + E+  E   A    L ++++  G+W ++    + M+ +
Sbjct: 662 ACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKAR 702



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/359 (19%), Positives = 143/359 (39%), Gaps = 75/359 (20%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D     ++L +C     L  GK  H      G+   + + + L++ Y + G   +A  +F
Sbjct: 24  DLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
           S+++  + +    +I+  + CG    A  +FRTM              L  + +P     
Sbjct: 84  SKMEERNVVSWTALISANAQCGAFARAFALFRTML-------------LESSAAP----- 125

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD----SDQIISTSLV 411
                       + ++L ++++ACAN   L +G  + A +  +GL+    +  ++  +++
Sbjct: 126 ------------NSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMI 173

Query: 412 DFYCKCGY----------------------------------DALALFNEMRNTGVKPTI 437
           + Y KCG                                   DAL +F EM    + P +
Sbjct: 174 NMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNV 233

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           ITF   L AC     +++G  W  ++  +  +  +    + +++++ + G    A ++ +
Sbjct: 234 ITFITALGACTS---LRDG-TWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFK 289

Query: 498 QMPF--EADVGMWSSILRGCVAHGDKGLGRKVAERM-IELDPENACAYIQLSSIFATSG 553
            M    E D+  W++++   V  G  G    +  R+ +E    N+   I + +  A SG
Sbjct: 290 AMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG 348



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 46/207 (22%)

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           + GS I  L       ++D   D     +++ +C + + L  G+     +   GL+    
Sbjct: 2   KRGSIIRQLCSLSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLF 61

Query: 406 ISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
           +   L++ Y +CG   +A A+F++M    V    +++TA++SA   CG        F  M
Sbjct: 62  LGNCLINMYVRCGSLEEAHAIFSKMEERNV----VSWTALISANAQCGAFARAFALFRTM 117

Query: 464 KWQYHIDPE-------------------------------IEHYS--------CMVDLFA 484
             +    P                                +E  S         M++++A
Sbjct: 118 LLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYA 177

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSI 511
           + G L +A+ +   +P E DV  W+++
Sbjct: 178 KCGSLEDAIAVFLAIP-EKDVVSWTAM 203


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 173/613 (28%), Positives = 296/613 (48%), Gaps = 106/613 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL  C+   ++ VG  +H   +K G+++  L + N L+ MY +CG  ++A +LF ++
Sbjct: 316 MVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHE-LMVCNALIDMYSKCGCLSEAAILFRKI 374

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS-------WNMLISGFAKADLAA 120
             ++  SWN+MI  + + G   ++  L   M  + +          N+L +   +++L +
Sbjct: 375 ENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLS 434

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L   + +H + L +   +  ++ +                               A I+ 
Sbjct: 435 L---RALHGYSLRHSFQYKELINN-------------------------------AFIAA 460

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA CG +  A  VF      S   WN++I G+  N +  +AL  + +M R G+L D  ++
Sbjct: 461 YAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSI 520

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            S+L AC  LG L++GK++HG   + G+  +  VA +LL                     
Sbjct: 521 VSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLL--------------------- 559

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                     ++Y  C +    +  F TM +K+ + WN+M+ G SQN  P EAL LF  M
Sbjct: 560 ----------SLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQM 609

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
               L  D+ ++AS++ AC+ +S+L LG++V        L  D  ++ SL+D Y K G+ 
Sbjct: 610 LSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFL 669

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                            A+ LF +M+ +  +P   TF  +L AC
Sbjct: 670 GHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQAC 729

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV EG  +   M+  Y ++PE+EHY+C++D+  RAG LNEA+N I +MP E D  +
Sbjct: 730 CHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKI 789

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           WSS+L   + + D  +G K AE+++ L+   A +YI LS+++AT+G+W+   ++R  M++
Sbjct: 790 WSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKD 849

Query: 568 KHVGKLPGCSWAD 580
             + K  GCSW +
Sbjct: 850 LSLQKDVGCSWIE 862



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 154/652 (23%), Positives = 277/652 (42%), Gaps = 159/652 (24%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R + +  LLQ C  + ++ +G++L          +    +  RL+ MY  CG P ++ L+
Sbjct: 106 RKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLV 165

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKS----LQLFNVMP-QKNDFSWNMLISG-FAKAD 117
           FD +  +N F WNA++ G+++    +++    L+L +V   Q ++F++  LI     K D
Sbjct: 166 FDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCD 225

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
              +  GK +H   +  GL  D  +G++++ LYGKCG  + A ++ + M E +      L
Sbjct: 226 ---IHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQN------L 276

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--NGVLE 235
           IS                         WNS+I G+  N    EA   F  +    +G++ 
Sbjct: 277 IS-------------------------WNSLIRGFSENGFWLEAYRAFRSLLESGDGLIP 311

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D +T+ ++L  CS  G ++ G  +HG A K+G++ +++V +AL+D YSK G  S+A  LF
Sbjct: 312 DVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILF 371

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-------------------------- 329
            +++    +  N+MI  YS  G + +   + R M                          
Sbjct: 372 RKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESE 431

Query: 330 ----------------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMN------------ 361
                             K LI+ N+ I   ++ GS + A  +F  MN            
Sbjct: 432 LLSLRALHGYSLRHSFQYKELIN-NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIG 490

Query: 362 -------------------KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
                              +L +  D FS+ S++ AC  +  L+ G+++   V   GL+ 
Sbjct: 491 GHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEM 550

Query: 403 DQIISTSLVDFYCKC--------------------------GY-------DALALFNEMR 429
           +  ++ SL+  Y  C                          GY       +AL+LF +M 
Sbjct: 551 NSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQML 610

Query: 430 NTGVKPTIITFTAILSACDH---CGLVKEGQKWFDAMKWQYHIDPEIEHYSC-MVDLFAR 485
           + G++P  I   +IL AC      GL KE   +  A+K     D  +   +C ++D++A+
Sbjct: 611 SDGLEPDEIAIASILGACSQLSALGLGKEVHCF--ALKNSLMEDNFV---ACSLMDMYAK 665

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
           +G L  +  +  ++  + +V  W+ ++ G   HG      ++ E M   D +
Sbjct: 666 SGFLGHSQRIFNRLNGK-EVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQ 716


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 183/664 (27%), Positives = 306/664 (46%), Gaps = 142/664 (21%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIEG 81
           +G Q+H   +  G   S + +AN L+ MY   G   DA  +F+E    RN  SWN ++  
Sbjct: 118 LGAQVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 82  FMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           ++K      ++Q+F  M     Q  +F ++ +++    +    +E G+Q+H+ ++  G D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR--NIEAGRQVHAMVVRMGYD 234

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
                                           D F  +AL+  Y   G+++ A  +F++ 
Sbjct: 235 -------------------------------KDVFTANALVDMYMKMGRVDIASVIFEKM 263

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
            D+  V WN++ISG + N  D  A+ L  +M+ +G++ +  TL+S+L ACS  G  + G+
Sbjct: 264 PDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGR 323

Query: 258 QVHGHACK----------VGVID---------------------DVIVASALLDTYSKRG 286
           Q+HG   K          VG++D                     D+I+ +AL+   S  G
Sbjct: 324 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGG 383

Query: 287 MPSDACKLFSELK---------------------------------------VYDTILLN 307
              +A  LF EL+                                       ++D  ++N
Sbjct: 384 RHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVN 443

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            +I  Y  C  + DA  +F    +  +I+  SMI  LSQ      A+ LF  M +  L  
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
           D F L+S+++ACA++S+ E G+QV A +      SD     +LV  Y KCG         
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                     AL LF  M + G+ P  IT T++L AC+H GLV 
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           E +++F++MK  + ID   EHYSCM+DL  RAG L++A+ L+  MPF+A+  +W ++L  
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGA 683

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
              H D  LG+  AE++  L+PE +  ++ L++ +A++G W + + +R +M++ ++ K P
Sbjct: 684 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEP 743

Query: 575 GCSW 578
             SW
Sbjct: 744 AMSW 747



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 201/448 (44%), Gaps = 81/448 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G  LH   LK G L S     N L+  Y +C  P  A  +FDE+P     SW++++  + 
Sbjct: 23  GAHLHASLLKSGSLAS---FRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 84  KLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
             G    ++Q F+ M  +    N+F+  +++     A L     G Q+H+  +  G   D
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL-----GAQVHAMAMATGFGSD 134

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT-T 198
             + ++LV +YG                            G+   G M+DARRVF+   +
Sbjct: 135 VFVANALVAMYG----------------------------GF---GFMDDARRVFNEADS 163

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           + ++V WN ++S Y+ N++  +A+ +F +M  +G+       + V++AC+    +E G+Q
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ 223

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           VH    ++G   DV  A+AL+D Y K G                               R
Sbjct: 224 VHAMVVRMGYDKDVFTANALVDMYMKMG-------------------------------R 252

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           ++ A  IF  MP+  ++SWN++I G   NG    A++L   M    L  + F+L+S++ A
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKA 312

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPT 436
           C+   + +LG Q+   +     DSD  I   LVD Y K  +  DA  +F+ M +      
Sbjct: 313 CSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHR----D 368

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMK 464
           +I   A++S C H G   E    F  ++
Sbjct: 369 LILCNALISGCSHGGRHDEALSLFYELR 396



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 193/426 (45%), Gaps = 68/426 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C+   +  +G+Q+H  F+ K   +S   I   L+ MY +     DA  +FD M
Sbjct: 306 LSSILKACSGAGAFDLGRQIH-GFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
             R+    NA+I G    G  +++L LF  + ++        ++   K  A L A    +
Sbjct: 365 FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H+  +  G  FD+ + + L++ Y KC                   CLS          
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCS------------------CLS---------- 456

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
              DA RVF+  +    +   SMI+     +    A+ LF +M R G+  D   L+S+L+
Sbjct: 457 ---DANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLN 513

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+SL   E GKQVH H  K   + D    +AL+ TY+K                     
Sbjct: 514 ACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK--------------------- 552

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     CG IEDA+  F ++P + ++SW++MI GL+Q+G    AL+LF  M    +
Sbjct: 553 ----------CGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 602

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGY--DAL 422
             +  ++ SV+ AC +   ++  ++ F  +  + G+D  +   + ++D   + G   DA+
Sbjct: 603 NPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 423 ALFNEM 428
            L N M
Sbjct: 663 ELVNSM 668



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 176/422 (41%), Gaps = 72/422 (17%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LIS Y+ C +   ARRVFD   D   V W+S+++ Y +N     A+  FH MR  GV  +
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
              L  VL           G QVH  A   G   DV VA+AL+  Y   G   DA ++F+
Sbjct: 103 EFALPVVLKCVPDARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           E                                  ++ +SWN ++    +N    +A+ +
Sbjct: 160 EAD------------------------------SERNAVSWNGLMSAYVKNDQCGDAIQV 189

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    ++  +F  + V++AC    ++E G QV A V  +G D D   + +LVD Y K
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMK 249

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
            G                                 + A+ L  +M+ +G+ P + T ++I
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSI 309

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L AC   G    G++    M  + + D +      +VD++A+   L++A  + + M F  
Sbjct: 310 LKACSGAGAFDLGRQIHGFM-IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHR 367

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN-ACAYIQLSSIFATSGEWEKSSLIR 562
           D+ + ++++ GC +HG  G   +      EL  E        L+++  ++   E +S  R
Sbjct: 368 DLILCNALISGC-SHG--GRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 563 DI 564
            +
Sbjct: 425 QV 426



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 39/247 (15%)

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +I+ YS C R   A+ +F  +P+   +SW+S++   S NG P  A+  F  M    + 
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            ++F+L  V+     +    LG QV A     G  SD  ++ +LV  Y   G+       
Sbjct: 101 CNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      DA+ +F EM  +G++PT   F+ +++AC     
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           ++ G++   AM  +   D ++   + +VD++ + G ++ A  + E+MP ++DV  W++++
Sbjct: 218 IEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALI 275

Query: 513 RGCVAHG 519
            GCV +G
Sbjct: 276 SGCVLNG 282


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 183/664 (27%), Positives = 306/664 (46%), Gaps = 142/664 (21%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIEG 81
           +G Q+H   +  G   S + +AN L+ MY   G   DA  +F+E    RN  SWN ++  
Sbjct: 118 LGAQVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 82  FMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           ++K      ++Q+F  M     Q  +F ++ +++    +    +E G+Q+H+ ++  G D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR--NIEAGRQVHAMVVRMGYD 234

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
                                           D F  +AL+  Y   G+++ A  +F++ 
Sbjct: 235 -------------------------------KDVFTANALVDMYMKMGRVDIASVIFEKM 263

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
            D+  V WN++ISG + N  D  A+ L  +M+ +G++ +  TL+S+L ACS  G  + G+
Sbjct: 264 PDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGR 323

Query: 258 QVHGHACK----------VGVID---------------------DVIVASALLDTYSKRG 286
           Q+HG   K          VG++D                     D+I+ +AL+   S  G
Sbjct: 324 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGG 383

Query: 287 MPSDACKLFSELK---------------------------------------VYDTILLN 307
              +A  LF EL+                                       ++D  ++N
Sbjct: 384 RHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVN 443

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            +I  Y  C  + DA  +F    +  +I+  SMI  LSQ      A+ LF  M +  L  
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
           D F L+S+++ACA++S+ E G+QV A +      SD     +LV  Y KCG         
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                     AL LF  M + G+ P  IT T++L AC+H GLV 
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           E +++F++MK  + ID   EHYSCM+DL  RAG L++A+ L+  MPF+A+  +W ++L  
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGA 683

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
              H D  LG+  AE++  L+PE +  ++ L++ +A++G W + + +R +M++ ++ K P
Sbjct: 684 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEP 743

Query: 575 GCSW 578
             SW
Sbjct: 744 AMSW 747



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 200/448 (44%), Gaps = 81/448 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G  LH   LK G L S     N L+  Y +C  P  A   FDE+P     SW++++  + 
Sbjct: 23  GAHLHASLLKSGSLAS---FRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYS 79

Query: 84  KLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
             G    ++Q F+ M  +    N+F+  +++     A L     G Q+H+  +  G   D
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL-----GAQVHAMAMATGFGSD 134

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT-T 198
             + ++LV +YG                            G+   G M+DARRVF+   +
Sbjct: 135 VFVANALVAMYG----------------------------GF---GFMDDARRVFNEADS 163

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           + ++V WN ++S Y+ N++  +A+ +F +M  +G+       + V++AC+    +E G+Q
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ 223

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           VH    ++G   DV  A+AL+D Y K G                               R
Sbjct: 224 VHAMVVRMGYDKDVFTANALVDMYMKMG-------------------------------R 252

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           ++ A  IF  MP+  ++SWN++I G   NG    A++L   M    L  + F+L+S++ A
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKA 312

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPT 436
           C+   + +LG Q+   +     DSD  I   LVD Y K  +  DA  +F+ M +      
Sbjct: 313 CSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHR----D 368

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMK 464
           +I   A++S C H G   E    F  ++
Sbjct: 369 LILCNALISGCSHGGRHDEALSLFYELR 396



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 193/426 (45%), Gaps = 68/426 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C+   +  +G+Q+H  F+ K   +S   I   L+ MY +     DA  +FD M
Sbjct: 306 LSSILKACSGAGAFDLGRQIH-GFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
             R+    NA+I G    G  +++L LF  + ++        ++   K  A L A    +
Sbjct: 365 FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H+  +  G  FD+ + + L++ Y KC                   CLS          
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCS------------------CLS---------- 456

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
              DA RVF+  +    +   SMI+     +    A+ LF +M R G+  D   L+S+L+
Sbjct: 457 ---DANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLN 513

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+SL   E GKQVH H  K   + D    +AL+ TY+K                     
Sbjct: 514 ACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK--------------------- 552

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     CG IEDA+  F ++P + ++SW++MI GL+Q+G    AL+LF  M    +
Sbjct: 553 ----------CGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 602

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGY--DAL 422
             +  ++ SV+ AC +   ++  ++ F  +  + G+D  +   + ++D   + G   DA+
Sbjct: 603 NPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 423 ALFNEM 428
            L N M
Sbjct: 663 ELVNSM 668



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 175/422 (41%), Gaps = 72/422 (17%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LIS Y+ C +   ARR FD   D   V W+S+++ Y +N     A+  FH MR  GV  +
Sbjct: 43  LISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
              L  VL           G QVH  A   G   DV VA+AL+  Y   G   DA ++F+
Sbjct: 103 EFALPVVLKCVPDARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           E                                  ++ +SWN ++    +N    +A+ +
Sbjct: 160 EAD------------------------------SERNAVSWNGLMSAYVKNDQCGDAIQV 189

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    ++  +F  + V++AC    ++E G QV A V  +G D D   + +LVD Y K
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMK 249

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
            G                                 + A+ L  +M+ +G+ P + T ++I
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSI 309

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L AC   G    G++    M  + + D +      +VD++A+   L++A  + + M F  
Sbjct: 310 LKACSGAGAFDLGRQIHGFM-IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHR 367

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN-ACAYIQLSSIFATSGEWEKSSLIR 562
           D+ + ++++ GC +HG  G   +      EL  E        L+++  ++   E +S  R
Sbjct: 368 DLILCNALISGC-SHG--GRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 563 DI 564
            +
Sbjct: 425 QV 426



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 39/247 (15%)

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +I+ YS C R   A+  F  +P+   +SW+S++   S NG P  A+  F  M    + 
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            ++F+L  V+     +    LG QV A     G  SD  ++ +LV  Y   G+       
Sbjct: 101 CNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      DA+ +F EM  +G++PT   F+ +++AC     
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           ++ G++   AM  +   D ++   + +VD++ + G ++ A  + E+MP ++DV  W++++
Sbjct: 218 IEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALI 275

Query: 513 RGCVAHG 519
            GCV +G
Sbjct: 276 SGCVLNG 282


>gi|356537365|ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Glycine max]
          Length = 722

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 181/592 (30%), Positives = 285/592 (48%), Gaps = 105/592 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIE 80
           G+ +H   +K G L  T  + N L+ MY +CG   DA  +F+E      R+  S+NAMI+
Sbjct: 196 GRHVHSVVIKSGFLGWT-SVVNSLITMYFKCGCVVDACEVFEEAEEGGSRDYVSYNAMID 254

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
           GF  +   E +  +F  M QK  F    +      +  ++L  G Q  S  +  G     
Sbjct: 255 GFASVERSEDAFLIFRDM-QKGCFDPTEVTFVSVMSSCSSLRAGCQAQSQAIKMGF---- 309

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            +G   VN                          +A+++ Y+  G++ + + +F+   + 
Sbjct: 310 -VGCVAVN--------------------------NAMMTMYSGFGEVIEVQNIFEGMEER 342

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             V WN M+S ++  N + EA+L + KMRR G+  D  T  S+L+A  SL  +E    +H
Sbjct: 343 DVVSWNIMVSMFLQENLEEEAMLSYLKMRREGIEPDEFTYGSLLAATDSLQVVE---MIH 399

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
              CK G++   +                                LN +++ Y   G+I+
Sbjct: 400 SLLCKSGLVKIEV--------------------------------LNALVSAYCRHGKIK 427

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            A  IF  +P KSLISWNS+I G   NG P++ L+ F  +    ++ + +SL+ V+S C+
Sbjct: 428 RAFQIFSGVPYKSLISWNSIISGFLMNGHPLQGLEQFSALLSTQVKPNAYSLSLVLSICS 487

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM--RNT----- 431
           ++S++  G+QV   +   G  S+  +  +LV  Y KCG    AL +F+ M  R+T     
Sbjct: 488 SMSAMSHGKQVHGYILRHGFSSEVSLGNALVTMYAKCGSLDKALRVFDAMVERDTITWNA 547

Query: 432 -------------------------GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                                    G+KP   TFT++LSAC H GLV +G + FD M   
Sbjct: 548 IISAYAQHGRGEEAVCCFEAMQTSPGIKPDQATFTSVLSACSHAGLVDDGIRIFDTMVKV 607

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           Y   P ++H+SC+VDL  R+G L+EA  +I+   F A   +  S+   C AHG+ GLGR 
Sbjct: 608 YGFVPSVDHFSCIVDLLGRSGYLDEAERVIKSGYFGAHSNICWSLFSACAAHGNLGLGRT 667

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           VA  ++E D  N   Y+ LS+I A +G+WE+++ +R++MRE    K PGCSW
Sbjct: 668 VARLILERDHNNPSVYVLLSNICAAAGQWEEAANLREMMREFGTIKQPGCSW 719



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 222/503 (44%), Gaps = 82/503 (16%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + +++ ++ SC+   S+  G Q     +K G +   + + N ++ MY   G   +   
Sbjct: 280 TEVTFVS-VMSSCS---SLRAGCQAQSQAIKMGFVG-CVAVNNAMMTMYSGFGEVIEVQN 334

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADL 118
           +F+ M  R+  SWN M+  F++   +E+++  +  M ++    ++F++  L+     A  
Sbjct: 335 IFEGMEERDVVSWNIMVSMFLQENLEEEAMLSYLKMRREGIEPDEFTYGSLL-----AAT 389

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            +L+  + IHS +  +G          LV +           +VLN           AL+
Sbjct: 390 DSLQVVEMIHSLLCKSG----------LVKI-----------EVLN-----------ALV 417

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           S Y   GK+  A ++F      S + WNS+ISG++ N    + L  F  +    V  +A 
Sbjct: 418 SAYCRHGKIKRAFQIFSGVPYKSLISWNSIISGFLMNGHPLQGLEQFSALLSTQVKPNAY 477

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           +L+ VLS CSS+  + HGKQVHG+  + G   +V + +AL+  Y+K G    A ++F  +
Sbjct: 478 SLSLVLSICSSMSAMSHGKQVHGYILRHGFSSEVSLGNALVTMYAKCGSLDKALRVFDAM 537

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              DTI  N +I+ Y+  GR E+A   F  M                   SP        
Sbjct: 538 VERDTITWNAIISAYAQHGRGEEAVCCFEAMQT-----------------SP-------- 572

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKC 417
                 ++ D+ +  SV+SAC++   ++ G ++F   V + G        + +VD   + 
Sbjct: 573 -----GIKPDQATFTSVLSACSHAGLVDDGIRIFDTMVKVYGFVPSVDHFSCIVDLLGRS 627

Query: 418 GY-DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
           GY D      +    G    I    ++ SAC   G +  G+     +  + H +P +  Y
Sbjct: 628 GYLDEAERVIKSGYFGAHSNIC--WSLFSACAAHGNLGLGRTVARLILERDHNNPSV--Y 683

Query: 477 SCMVDLFARAGCLNEAVNLIEQM 499
             + ++ A AG   EA NL E M
Sbjct: 684 VLLSNICAAAGQWEEAANLREMM 706



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 126/564 (22%), Positives = 229/564 (40%), Gaps = 143/564 (25%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL-LLFDEMPRRNCFSWNAMIEGFMK 84
           QLH   ++ G L +   +AN LL +Y +      ++ L F E+   + +SW  ++    K
Sbjct: 66  QLHALAVRTG-LGAHSHVANSLLSLYAKAHRDLASVKLTFQEIDCPDAYSWTTLLSACAK 124

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFA--------------------KAD------- 117
           L   E +L++F+ +P+ +   WN +I+G A                    KAD       
Sbjct: 125 LDSVEHALKVFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMGVKADKYTFATM 184

Query: 118 -----LAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
                L   +YG+ +HS ++ +G L + SV+ +SL+ +Y KCG                 
Sbjct: 185 LSLCSLELFDYGRHVHSVVIKSGFLGWTSVV-NSLITMYFKCG----------------- 226

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSS---VMWNSMISGYISNNEDTEALLLFHKM 228
            C+              DA  VF+   +  S   V +N+MI G+ S     +A L+F  M
Sbjct: 227 -CVV-------------DACEVFEEAEEGGSRDYVSYNAMIDGFASVERSEDAFLIFRDM 272

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
           ++        T  SV+S+CSS   L  G Q    A K+G +  V V +A           
Sbjct: 273 QKGCFDPTEVTFVSVMSSCSS---LRAGCQAQSQAIKMGFVGCVAVNNA----------- 318

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                               M+T+YS  G + + ++IF  M  + ++SWN M+    Q  
Sbjct: 319 --------------------MMTMYSGFGEVIEVQNIFEGMEERDVVSWNIMVSMFLQEN 358

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              EA+  +  M +  +  D+F+  S+++A  ++  +E+   +  +  ++ ++    +  
Sbjct: 359 LEEEAMLSYLKMRREGIEPDEFTYGSLLAATDSLQVVEMIHSLLCKSGLVKIE----VLN 414

Query: 409 SLVDFYCKCG---------------------------------YDALALFNEMRNTGVKP 435
           +LV  YC+ G                                    L  F+ + +T VKP
Sbjct: 415 ALVSAYCRHGKIKRAFQIFSGVPYKSLISWNSIISGFLMNGHPLQGLEQFSALLSTQVKP 474

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
              + + +LS C     +  G K       ++    E+   + +V ++A+ G L++A+ +
Sbjct: 475 NAYSLSLVLSICSSMSAMSHG-KQVHGYILRHGFSSEVSLGNALVTMYAKCGSLDKALRV 533

Query: 496 IEQMPFEADVGMWSSILRGCVAHG 519
            + M  E D   W++I+     HG
Sbjct: 534 FDAM-VERDTITWNAIISAYAQHG 556



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 189/428 (44%), Gaps = 36/428 (8%)

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCG-DFNSANQVLNMMKEPDDFCLSALISGYANC 184
           Q+H+  +  GL   S + +SL++LY K   D  S       +  PD +  + L+S  A  
Sbjct: 66  QLHALAVRTGLGAHSHVANSLLSLYAKAHRDLASVKLTFQEIDCPDAYSWTTLLSACAKL 125

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             +  A +VFD        +WN++I+G         A  LF  M + GV  D  T A++L
Sbjct: 126 DSVEHALKVFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMGVKADKYTFATML 185

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VY 301
           S C SL   ++G+ VH    K G +    V ++L+  Y K G   DAC++F E +     
Sbjct: 186 SLC-SLELFDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDACEVFEEAEEGGSR 244

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D +  N MI  ++S  R EDA  IFR M            V +  + S + A    C   
Sbjct: 245 DYVSYNAMIDGFASVERSEDAFLIFRDMQKGCFDPTEVTFVSVMSSCSSLRA---GCQAQ 301

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGYD 420
              ++M      +V +A   + S   GE +  +    G++   ++S + +V  + +   +
Sbjct: 302 SQAIKMGFVGCVAVNNAMMTMYS-GFGEVIEVQNIFEGMEERDVVSWNIMVSMFLQENLE 360

Query: 421 ALALFN--EMRNTGVKPTIITFTAILSACD--------HCGLVKEGQKWFDAMKWQYHID 470
             A+ +  +MR  G++P   T+ ++L+A D        H  L K G              
Sbjct: 361 EEAMLSYLKMRREGIEPDEFTYGSLLAATDSLQVVEMIHSLLCKSGL------------- 407

Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD--KGLGRKVA 528
            +IE  + +V  + R G +  A  +   +P+++ +  W+SI+ G + +G   +GL +  A
Sbjct: 408 VKIEVLNALVSAYCRHGKIKRAFQIFSGVPYKSLIS-WNSIISGFLMNGHPLQGLEQFSA 466

Query: 529 ERMIELDP 536
               ++ P
Sbjct: 467 LLSTQVKP 474



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 149/341 (43%), Gaps = 44/341 (12%)

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
           N M++    +N+ T++L LF     +    D   L++ ++A ++      G Q+H  A +
Sbjct: 15  NHMLAALARSNQHTQSLKLF-VHAHSSFTPDHYILSTAITAAANARRAAFGAQLHALAVR 73

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKL-FSELKVYDTILLNTMITVYSSCGRIEDAKH 324
            G+     VA++LL  Y+K      + KL F E+   D     T+++  +    +E A  
Sbjct: 74  TGLGAHSHVANSLLSLYAKAHRDLASVKLTFQEIDCPDAYSWTTLLSACAKLDSVEHALK 133

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
           +F  +P   +  WN++I G ++ G+   A  LF +MNK+ ++ DK++ A+++S C+ +  
Sbjct: 134 VFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMGVKADKYTFATMLSLCS-LEL 192

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------------- 418
            + G  V + V   G      +  SL+  Y KCG                          
Sbjct: 193 FDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDACEVFEEAEEGGSRDYVSYNAM 252

Query: 419 ----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
                      DA  +F +M+     PT +TF +++S+C    L    Q    A+K  + 
Sbjct: 253 IDGFASVERSEDAFLIFRDMQKGCFDPTEVTFVSVMSSCS--SLRAGCQAQSQAIKMGFV 310

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
               +   + M+ +++  G + E  N+ E M  E DV  W+
Sbjct: 311 GCVAVN--NAMMTMYSGFGEVIEVQNIFEGME-ERDVVSWN 348


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 173/588 (29%), Positives = 285/588 (48%), Gaps = 100/588 (17%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           +H H +K     S + +   ++ MY++CG   DA  LFD+MP RN  SWNAMI GF ++G
Sbjct: 74  IHTHVVKSPFY-SDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIG 132

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIHSHILVNGLDFDSVLGS 144
             ++   LF  M           + G  +A ++A  L + K +H+  +  GLD D+    
Sbjct: 133 SLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADT---- 188

Query: 145 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD--RTTDTSS 202
           S+ N +                           I+ Y+ CG++  A+ VF   + T  SS
Sbjct: 189 SVSNTW---------------------------IAAYSKCGELQLAKMVFHGIQKTARSS 221

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V WNS+I+ Y    +  +A+  +  +  +G   DAST+ S+LS+C     L +G  +HGH
Sbjct: 222 VSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGH 281

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
             ++G   D+                                L+NT+I++YS CG I  A
Sbjct: 282 GFQLGCDSDIS-------------------------------LINTLISMYSRCGDISSA 310

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             +F  M  ++ +SW +MI G S+ G   +AL LF  M +   + D  ++ S+IS C   
Sbjct: 311 TILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKT 370

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------ 418
            +L LG  +    ++  L  D ++  +L+D Y KCG                        
Sbjct: 371 GALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMI 430

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                     +AL LF+ +  +G++P  ITF A+L AC H G +++G++ F  M  +Y I
Sbjct: 431 AACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGI 490

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           +P ++HYSCM+DL  R G L EA+ +I+ MP + D G+W ++L  C  H +  +G  V+ 
Sbjct: 491 NPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIGEYVSR 550

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            + EL P  A +++++++I+A+ G W++ + +R  MR   + K PG S
Sbjct: 551 YLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKS 598



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 122/499 (24%), Positives = 203/499 (40%), Gaps = 118/499 (23%)

Query: 71  NCFS-------WNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLA 119
           NCFS       WN+ I G +  G+  K+L LF+ +     Q N+F++  L    AK  L+
Sbjct: 9   NCFSKLSTLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAK--LS 66

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP---DDFCLSA 176
            L   + IH+H++                                  K P   D +  +A
Sbjct: 67  HLTNSQIIHTHVV----------------------------------KSPFYSDIYVQTA 92

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           ++  Y  CGK++DA  +FD+    +   WN+MI G+           LF  MR  G   D
Sbjct: 93  MVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPD 152

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           A+T+  +  A  S   L   K VH    + G+                     DA     
Sbjct: 153 AATVIGLTRAVISAKSLRFLKAVHAIGIETGL---------------------DA----- 186

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEAL 354
                DT + NT I  YS CG ++ AK +F  +    +S +SWNS+I   +  G  ++A+
Sbjct: 187 -----DTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAV 241

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
             +  +     + D  ++ S++S+C    +L  G  +      +G DSD  +  +L+  Y
Sbjct: 242 KSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMY 301

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
            +CG                                  DAL LFN M  TG KP I+T  
Sbjct: 302 SRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVL 361

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           +++S C   G +  G  W D     + +  ++   + ++D++A+ G LN+A  +   +P 
Sbjct: 362 SLISGCGKTGALGLGH-WIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPN 420

Query: 502 EADVGMWSSILRGCVAHGD 520
              V  W++++  C  +G+
Sbjct: 421 RTVVS-WTAMIAACALNGE 438



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 180/413 (43%), Gaps = 83/413 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL SC    ++  G  +H H  + G  +S + + N L+ MY RCG+ + A +LFD M  R
Sbjct: 262 LLSSCQQPEALIYGFLIHGHGFQLGC-DSDISLINTLISMYSRCGDISSATILFDGMSIR 320

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKADLAALEYGKQ 126
            C SW AMI G+ ++G  + +L LFN M +  +     +   LISG  K    AL  G  
Sbjct: 321 TCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKT--GALGLGHW 378

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           I ++  ++ L  D V+ ++L+++Y KCG                                
Sbjct: 379 IDNYASLHELKKDVVVCNALIDMYAKCGS------------------------------- 407

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +NDAR +F    + + V W +MI+    N E  EAL LF  +  +G+  +  T  +VL A
Sbjct: 408 LNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQA 467

Query: 247 CSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRG-----------MPSD---- 290
           C   G+LE G++       + G+   +   S ++D   ++G           MP      
Sbjct: 468 CCHGGYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEG 527

Query: 291 -------ACKLFS-------------ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM- 329
                  ACK+ +             EL+    +    M  +Y+S GR ++   + +TM 
Sbjct: 528 IWGALLGACKIHNNMEIGEYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMR 587

Query: 330 -------PNKSLISWNSMI-VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
                  P KS++  N M  V   ++ S  ++L ++  +  L ++M +   +S
Sbjct: 588 SNQMRKSPGKSVVQVNGMSHVFFVEDRSHHDSLLIYEALGNLAMQMKQKEFSS 640


>gi|302774719|ref|XP_002970776.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
 gi|300161487|gb|EFJ28102.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
          Length = 750

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 169/634 (26%), Positives = 294/634 (46%), Gaps = 99/634 (15%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D   ++LA ++++C +   +  GK++H H     + N    +AN L++MY +CG+  DA
Sbjct: 7   LDRVYEHLASIVRACGSSRDLIAGKRIHAHIADANLGNYRF-LANLLVEMYGKCGSLHDA 65

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA 120
             +FD +   N FSWN ++  + + G   ++ Q F  MP KN   W  LI+  A++    
Sbjct: 66  RRVFDSIHSPNIFSWNLLVVAYTQNGRLREARQCFEKMPGKNVVCWTGLITANAQSGYVL 125

Query: 121 LEYG-----------------------------KQIHSHILVNGLDFDSVLGSSLVNLYG 151
              G                             K IH  ++  G+     L   +V +Y 
Sbjct: 126 SARGVFEKMPQRNRVTWTAMVWCLVNAGDVIEAKIIHEQLVQMGIAEQLPLAKFIVQMYL 185

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD----RTTDTSSVMWNS 207
            CG  + A  + +++   D    +A+I+ YA  G+  +A ++F+    RT   S ++WN+
Sbjct: 186 SCGSLDEARNLFDLLPSKDVGMWTAVIAAYAKYGRWQEAIKLFETMESRTGPYSVLVWNA 245

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           +IS    N +   +L LF KMRR GV  D+ TLA+ L  C++ G L  G+ V        
Sbjct: 246 IISASFQNGQLKGSLELFWKMRRQGVRPDSLTLATALDTCAASGNLHEGRMV-------- 297

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
                   + L+  Y   G+ S+             ++ ++++ +Y  CG ++DA+ +F 
Sbjct: 298 --------AELVTVY---GLQSN------------DLVNSSLVHMYGKCGSLDDARRVFD 334

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
            M ++  + W+ MI   S++G   EA  L   M    +  D  S  + + AC ++ +LE 
Sbjct: 335 GMAHRGPVVWSKMIAAYSEHGHCSEAFVLLKEMESAKMVADASSCVAFLQACGSLLALEA 394

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------------- 418
           G++V   +T+ GL+ D  +  +LVD Y KCG                             
Sbjct: 395 GQEVHGWITMKGLEQDVFVGNALVDMYGKCGSVEEAWAVFDNMKEKNWFSWNFMVEAYCS 454

Query: 419 ----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                +A+ +F +M   GVKP   TFT++L AC H G ++EG      M   Y + P  E
Sbjct: 455 SGYSTEAIQVFLQMLQEGVKPNAKTFTSVLVACGHAGFIREGILHLVYMSSDYDVVPIAE 514

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           HY+C V L  R+G + EA   ++++P +A+  +W +++  C  HGD   GR  AE ++E 
Sbjct: 515 HYACAVGLLGRSGWVKEAEEYVKKLP-DAEASVWDALVTACRIHGDLDRGRSAAESLLEC 573

Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            P  A +Y  ++ ++      + ++ +R+ M  K
Sbjct: 574 SPHAARSYAVVAGLYDALARSDDAARVRETMTSK 607


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 175/641 (27%), Positives = 307/641 (47%), Gaps = 82/641 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-E 66
           ++R L S  T   +H   +LH   +  G+ +S +  + +L+  Y    +PT +  +F   
Sbjct: 19  ISRALASAATTTQLH---KLHSLIITLGLHHSVI-FSAKLIAKYAHFRDPTSSFSVFRLA 74

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKNDFSWNMLISGFAKADLAALE 122
            P  N + WN++I      G   ++L L++    +  Q + +++  +I+  A A L   E
Sbjct: 75  SPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVIN--ACAGLLDFE 132

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
             K IH  +L  G   D  +G++L+++Y +  D                           
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFND--------------------------- 165

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR------NGVLED 236
               ++ AR+VF+       V WNS+ISGY +N    EAL ++++  +      N    D
Sbjct: 166 ----LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPD 221

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             T+ S+L AC  LG LE GK VH +    G   D   ++ L++ Y+K G    + ++FS
Sbjct: 222 LLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFS 281

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            +K  D++  N+MI VY   G++ D+  +F  M  + +I+WN++I     +      L +
Sbjct: 282 GMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRM 341

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
              M    +  D  ++ S++  C+ +++   G+++   +  +GL+SD  +   L++ Y K
Sbjct: 342 ISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSK 401

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           CG                                   A+  F EM   G+ P  + F AI
Sbjct: 402 CGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAI 461

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           + AC H GLV+EG  +F  MK  Y I+P IEHY+C+VDL +R+  L++A + I  MP + 
Sbjct: 462 IFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKP 521

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           D  +W ++L  C   GD  +  +V+ER+IEL+P++   Y+ +S+I+A  G+W++   IR 
Sbjct: 522 DSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRK 581

Query: 564 IMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQ 604
            ++ + + K PGCSW + I    +   T       F+E+ +
Sbjct: 582 SIKARGLKKDPGCSWME-IQNKVYVFGTGTKFFEQFEEVNK 621


>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
          Length = 794

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 183/647 (28%), Positives = 311/647 (48%), Gaps = 120/647 (18%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FD +P RN 
Sbjct: 145 KACGALQWSRFGRGVHGYVAKAG-LHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNA 203

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++L + M ++      + +S    A A++  +E GKQ H+ 
Sbjct: 204 VAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAI 263

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNGL+ D++LG+S++N Y K G    A  + + M E D    + LISGY   G +   
Sbjct: 264 AIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVE-- 321

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                        EA+ +   MRR  +  D  TL++++SA +S 
Sbjct: 322 -----------------------------EAIYMCQLMRRENLKFDCVTLSTLMSAATST 352

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK++  +  + G+  D+++AS  +D Y+K G   +A K+F      D IL NT++
Sbjct: 353 QNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLL 412

Query: 311 TVYSSC-----------------------------------GRIEDAKHIFRTM------ 329
           + Y+                                     G++ +AK +F  M      
Sbjct: 413 SAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIF 472

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  LISW +M+ GL QNG   EA+     M +  LR + F++   +SACAN++SL  G 
Sbjct: 473 PN--LISWTTMMNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSACANLASLHFGR 530

Query: 390 QVFARVTIIGLDSDQI-----ISTSLVDFYCKCG-------------------------- 418
            +   +    + + Q      I TSLVD Y KCG                          
Sbjct: 531 SIHGYI----IRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISA 586

Query: 419 -------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                   +A+ L+  + + GVKP  IT T++LS C++   V +  + F  M  ++ + P
Sbjct: 587 YALYGKVREAITLYRSLEDGGVKPDNITITSLLS-CNYGRDVNQAIEVFSDMVSKHGMKP 645

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            +EHY  MVDL A AG  ++A+ L+E+MP++ D  M  S+   C       L   +++ +
Sbjct: 646 CLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHL 705

Query: 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +E +P+N+  Y+ +S+ +A  G W++ + +R++M+ K + K PGCSW
Sbjct: 706 LESEPDNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSW 752



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 247/517 (47%), Gaps = 71/517 (13%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LKKG        I  +L+  Y +C     A +LF ++
Sbjct: 38  GEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKL 97

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             RN FSW A+I    ++G  E +L  F  M +   F  N ++    KA   L    +G+
Sbjct: 98  RVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 157

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H ++   GL     + SSL ++YGK                               CG
Sbjct: 158 GVHGYVAKAGLHHCVFVASSLADMYGK-------------------------------CG 186

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++DAR+VFD   D ++V WN+++ GY+ N  + EA+ L  +MR+ G+     T+++ LS
Sbjct: 187 VLDDARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLS 246

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A +++G +E GKQ H  A   G+  D I+ +++L+ Y K G+                  
Sbjct: 247 ASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGL------------------ 288

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                        IE A+ IF  M  K +++WN +I G  Q G   EA+ +   M + +L
Sbjct: 289 -------------IEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENL 335

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425
           + D  +L++++SA  +  +L+LG+++       GL+SD +++++ VD Y KCG  ++   
Sbjct: 336 KFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCG--SIVNA 393

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            ++ ++ V+  +I +  +LSA    GL  E  + F  M+ +  + P +  ++ ++    R
Sbjct: 394 KKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLE-SVPPNVITWNLIILSLLR 452

Query: 486 AGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHG 519
            G +NEA  +  QM       ++  W++++ G V +G
Sbjct: 453 NGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNG 489



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 129/349 (36%), Gaps = 74/349 (21%)

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           +S    N E  EAL L  +M    +         +L  C     L  G+Q+H    K G 
Sbjct: 6   VSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKG- 64

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
                      D Y++                 +  +   ++  Y+ C  +E A+ +F  
Sbjct: 65  -----------DFYAR-----------------NEYIETKLVIFYAKCDALEIAQVLFSK 96

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           +  +++ SW ++I    + G    AL  F  M +  +  D F + +V  AC  +     G
Sbjct: 97  LRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFG 156

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------------------- 419
             V   V   GL     +++SL D Y KCG                              
Sbjct: 157 RGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQN 216

Query: 420 ----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK-----WFDAMKWQYHID 470
               +A+ L +EMR  G++PT +T +  LSA  + G ++EG++       + ++    + 
Sbjct: 217 GMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILG 276

Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             I ++ C V L        E   +I     E DV  W+ ++ G V  G
Sbjct: 277 TSILNFYCKVGLI-------EYAEMIFDGMIEKDVVTWNLLISGYVQQG 318



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 45/223 (20%)

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           S+   +  L +NG   EAL L   M+  ++R+       ++  C     L  G+Q+ A++
Sbjct: 1   SYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQI 60

Query: 396 TIIG--LDSDQIISTSLVDFYCKC---------------------------------GYD 420
              G     ++ I T LV FY KC                                 G  
Sbjct: 61  LKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEG 120

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH----Y 476
           AL  F EM   G+ P       + + C  CG ++  +  F      Y     + H     
Sbjct: 121 ALMGFVEMLENGIFPDNFV---VPNVCKACGALQWSR--FGRGVHGYVAKAGLHHCVFVA 175

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           S + D++ + G L++A  + + +P    V  W++++ G V +G
Sbjct: 176 SSLADMYGKCGVLDDARKVFDYIPDRNAVA-WNALMVGYVQNG 217



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 18/191 (9%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    + +  I   L+ MY +CG+   A  +F       
Sbjct: 517 LSACANLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSE 576

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHI 131
              +NAMI  +   G   +++ L+  +        N+ I+      L +  YG+ ++  I
Sbjct: 577 LPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITIT-----SLLSCNYGRDVNQAI 631

Query: 132 LVNGLDFDSVLGSS--------LVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYA 182
            V   D  S  G          +V+L    G+ + A +++  M  +PD   + +L   + 
Sbjct: 632 EVFS-DMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQSL---FE 687

Query: 183 NCGKMNDARRV 193
           +C K +    V
Sbjct: 688 SCSKQHKTELV 698


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 176/617 (28%), Positives = 303/617 (49%), Gaps = 83/617 (13%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+  GKQLH   +  G     + I  +L+  Y       DA  + +     +   WN +I
Sbjct: 108 SLSQGKQLHTLIISLGFEQHPI-IVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLI 166

Query: 80  EGFMKLGHKEKSLQLFNVMPQK----NDFSW-NMLISGFAKADLAALEYGKQIHSHILVN 134
             +++ G   ++L  +  M  K    + F++ ++L +   K D+A   +GK++H+ I  +
Sbjct: 167 SSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIA---FGKKLHASINAS 223

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
            L ++  + +SLV++Y K G+ ++A  +   M E DD   + +ISGYA+ G   +A  +F
Sbjct: 224 CLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELF 283

Query: 195 DRT----TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
            +      + + + WN++  G + +    EAL L   MR  G+  D+      L ACS +
Sbjct: 284 GKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHI 343

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI--LLNT 308
           G ++ G+++HG A +                                   YD +  + N 
Sbjct: 344 GAIKLGREIHGSAIR---------------------------------SFYDGVDNVKNA 370

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +IT+YS C  +  A ++F++   K++I+WNSM+ G +      EA  LF  M    +  +
Sbjct: 371 LITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPN 430

Query: 369 KFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKC---------- 417
             ++AS++  CA +++L+ G++    +    G     ++  SLVD Y +           
Sbjct: 431 YVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLF 490

Query: 418 -----------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                  G +AL LF+EM+   +KP  +T  A+LSAC H GLV 
Sbjct: 491 DSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVT 550

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG K F+ M   Y I P +EH++CMVDLF RAG L++A  +I +MP+     MW+++L  
Sbjct: 551 EGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLGA 610

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  HG+  +G   AE+++E+ PEN+  Y+ +++++A +G W K + +R  MR+  V K P
Sbjct: 611 CRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTYMRDLGVRKAP 670

Query: 575 GCSWAD-GIAFNCWFLD 590
           GC+W D G  F  + +D
Sbjct: 671 GCAWVDVGSGFFPFLVD 687



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 225/494 (45%), Gaps = 59/494 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     I  GK+LH   +    L   L + N L+ MY + G  + A  LF+ M  R
Sbjct: 200 VLKACGEKLDIAFGKKLHAS-INASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLER 258

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWN MI G+   G  +++ +LF  M     + N  +WN +  G  ++     E   +
Sbjct: 259 DDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQS--GNFEEALE 316

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN-------QVLNMMKEPDDFCLSALIS 179
           + SH+   G+D DSV  ++++ L G C    +           +    +  D   +ALI+
Sbjct: 317 LLSHMRSYGIDMDSV--ATIIGL-GACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALIT 373

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            Y+ C  +  A  +F  T   + + WNSM+SGY   +   EA  LF +M  +G+  +  T
Sbjct: 374 MYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVT 433

Query: 240 LASVLSACSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           +AS+L  C+ +  L+HGK+ H +   + G  D +++ ++L+D Y++ G   +A +LF  +
Sbjct: 434 IASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSI 493

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              D +                               ++ S+I G    G   EAL LF 
Sbjct: 494 SRRDEV-------------------------------TYTSLIAGYGIQGEGREALKLFD 522

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKC 417
            M K  ++ D  ++ +V+SAC++   +  G ++F  + +  G+         +VD + + 
Sbjct: 523 EMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRA 582

Query: 418 G--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
           G  + A  +   M     +P+   +  +L AC   G  + G+ W  A +    + PE   
Sbjct: 583 GLLHKAKEMITRMP---YRPSSAMWATLLGACRIHGNAEIGE-W--AAEKLLEMRPENSG 636

Query: 476 YSCMV-DLFARAGC 488
           Y  ++ +++A AGC
Sbjct: 637 YYVLIANMYAAAGC 650



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 21/171 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L  C    ++  GK+ H + L++      L + N L+ MY R G   +A  LFD +
Sbjct: 434 IASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSI 493

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
            RR+  ++ ++I G+   G   ++L+LF+ M +++    ++ +     A L+A       
Sbjct: 494 SRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMV----AVLSACS----- 544

Query: 128 HSHILVNGLDFDSVLGSS------------LVNLYGKCGDFNSANQVLNMM 166
           HS ++  G+    ++ S+            +V+L+G+ G  + A +++  M
Sbjct: 545 HSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRM 595


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 183/615 (29%), Positives = 302/615 (49%), Gaps = 68/615 (11%)

Query: 5   IDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTD 59
           +DY    RL+Q C+ H  +   KQLH       +L+S  P   +A++L+  Y +  +  +
Sbjct: 32  LDYGAFGRLIQHCSDHRLLRQAKQLHARI----VLSSLTPDNFLASKLITFYSKSNHLYE 87

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA 119
           A  +FD++  +N FSWNAM+ G+        S+   +V       S     S   K D  
Sbjct: 88  AHKVFDKILDKNIFSWNAMLIGY--------SIHNMHVHTLNLLSSLLPSYSLTLKPDNF 139

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            +    +  S +       DS+L   +     +C        VL    + D F ++ALI+
Sbjct: 140 TITCVLKALSVLFP-----DSILAKEV-----QC-------FVLRHGFDSDIFVVNALIT 182

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDAS 238
            Y+ C +   AR +FDR  D   V WNSMI+GY       +   L+ KM    G+  +  
Sbjct: 183 YYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGV 242

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T+ SVL AC+    L  G +VH    +  V  DV   ++L+  Y+K G    A +LF+E+
Sbjct: 243 TVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEM 302

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              D +   ++++ Y + G ++ A  +FR M N  L +WN++I GL QN      L+L  
Sbjct: 303 SNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQ 362

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M +   R +  +L+S++   +  S+L+ G+ + A     G   +  ++TS++D Y K G
Sbjct: 363 EMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLG 422

Query: 419 Y---------------------------------DALALFNEMRNTGVKPTIITFTAILS 445
           +                                  AL LF +M + G +P  +TFTA+L+
Sbjct: 423 FLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLA 482

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H G+V E  K FD M  +Y   P +EHY+CMV + +RAG L+EA   I +MP E + 
Sbjct: 483 ACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPNA 542

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +W ++L G    GD  LG+ V + +  ++PEN   Y+ ++++++ +G WE++  IR+ M
Sbjct: 543 KVWGALLNGVSVSGDVELGKFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKM 602

Query: 566 REKHVGKLPGCSWAD 580
           ++  + K+PG SW +
Sbjct: 603 KKIGLKKIPGTSWIE 617



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 165/396 (41%), Gaps = 60/396 (15%)

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-------PDDFCLSALISGYANCG 185
           VNGLD+      +   L   C D     Q   +          PD+F  S LI+ Y+   
Sbjct: 29  VNGLDY-----GAFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSN 83

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL---EDASTLAS 242
            + +A +VFD+  D +   WN+M+ GY  +N     L L   +  +  L    D  T+  
Sbjct: 84  HLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITC 143

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL A S L                    D I+A  +     + G  S            D
Sbjct: 144 VLKALSVL------------------FPDSILAKEVQCFVLRHGFDS------------D 173

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-N 361
             ++N +IT YS C     A+ +F  M ++ ++SWNSMI G SQ G   +  +L+  M +
Sbjct: 174 IFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLD 233

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
              LR +  ++ SV+ ACA  + L  G +V   +    ++ D     SL+  Y KCG   
Sbjct: 234 STGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLD 293

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
            A  LFNEM N       +T+ +I+S     G V +    F  MK     +P +  ++ +
Sbjct: 294 YARELFNEMSNKDE----VTYGSIVSGYMTHGFVDKAMDLFREMK-----NPRLSTWNAV 344

Query: 480 VDLFARAGCLNEAVNLIEQMP---FEADVGMWSSIL 512
           +    +  C    + L+++M    F  +    SSIL
Sbjct: 345 ISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSIL 380


>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
          Length = 784

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 182/647 (28%), Positives = 309/647 (47%), Gaps = 119/647 (18%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FD +P RN 
Sbjct: 158 KACGALQWSRFGRGVHGYVAKAG-LHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNA 216

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
            +WNA++ G+++ G  E++++L + M ++      + +S    A A++  +E GKQ H+ 
Sbjct: 217 VAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAX 276

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +VNGL  D++LG+S++N Y   G    A  + + M E      + LISGY   G +   
Sbjct: 277 XIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLISGYVQQGLVE-- 334

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                        EA+ +   MRR  +  D  TL++++SA +S 
Sbjct: 335 -----------------------------EAIHMCQLMRRENLKFDCVTLSTLMSAATST 365

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L+ GK++  +  + G+  D+++AS  +D Y+K G   +A K+F      D IL NT++
Sbjct: 366 QNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLL 425

Query: 311 TVYSSC-----------------------------------GRIEDAKHIFRTM------ 329
           + Y+                                     G++ +AK +F  M      
Sbjct: 426 SAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIF 485

Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
           PN  LISW +M+ GL QNG   EA+     M +  LR + F++   +SACAN++SL  G 
Sbjct: 486 PN--LISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACANLASLHFGR 543

Query: 390 QVFARVTIIGLDSDQI-----ISTSLVDFYCKCG-------------------------- 418
            +   +    + + Q      I TSLVD Y KCG                          
Sbjct: 544 SIHGYI----IRNQQYSFSAWIETSLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISA 599

Query: 419 -------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                   +A+ L+  + + GVKP  IT T++LSAC++   V +  + F  M  ++ + P
Sbjct: 600 YALYGKVREAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIEVFSDMVSKHGMKP 659

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            +EHY  MVDL A AG  ++A+ L+E+MP++ D  M  S+   C       L   +++ +
Sbjct: 660 CLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELVEYLSKHL 719

Query: 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +E +P+N+  Y+ +S+ +A  G W++ + +R++M+ K + K PGCSW
Sbjct: 720 LESEPDNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSW 766



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 242/517 (46%), Gaps = 71/517 (13%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LKKG        I  +L+  Y +C     A +LF ++
Sbjct: 51  GEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKL 110

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             RN FSW A+I    ++G  E +L  F  M +   F  N ++    KA   L    +G+
Sbjct: 111 RVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 170

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H ++   GL     + SSL ++YGKCG  + A +V + +  PD               
Sbjct: 171 GVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYI--PD--------------- 213

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                          ++V WN+++ GY+ N  + EA+ L  +MR+ G+     T+++ LS
Sbjct: 214 --------------RNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLS 259

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A +++G +E GKQ H      G+  D I+ +++L+ Y   G+                  
Sbjct: 260 ASANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGL------------------ 301

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                        IE A+ IF  M  K  ++WN +I G  Q G   EA+ +   M + +L
Sbjct: 302 -------------IEYAEMIFDGMIEKXXVTWNLLISGYVQQGLVEEAIHMCQLMRRENL 348

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425
           + D  +L++++SA  +  +L+LG+++       GL+SD +++++ VD Y KCG  ++   
Sbjct: 349 KFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCG--SIVNA 406

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            ++ ++ V+  +I +  +LSA    GL  E  + F  M+ +  + P +  ++ ++    R
Sbjct: 407 KKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLE-SVPPNVITWNLIILSLLR 465

Query: 486 AGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHG 519
            G +NEA  +  QM       ++  W++++ G V +G
Sbjct: 466 NGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNG 502



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 107/456 (23%), Positives = 191/456 (41%), Gaps = 102/456 (22%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH+ IL                   K GDF + N+ +           + L+  YA 
Sbjct: 66  GQQIHAQIL-------------------KKGDFYARNEYIE----------TKLVIFYAK 96

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C  +  A+ +F +    +   W ++I           AL+ F +M  NG+  D   + +V
Sbjct: 97  CDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNV 156

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
             AC +L +   G+ VHG+  K G+   V VAS+L D Y K G+  D             
Sbjct: 157 CKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDD------------- 203

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                             A+ +F  +P+++ ++WN+++VG  QNG   EA+ L   M K 
Sbjct: 204 ------------------ARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKE 245

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            +   + ++++ +SA AN+  +E G+Q  A   + GL  D I+ TS+++FYC  G     
Sbjct: 246 GIEPTRVTVSTCLSASANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYA 305

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +A+ +   MR   +K   +T + ++SA    
Sbjct: 306 EMIFDGMIEKXXVTWNLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATST 365

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
             +K G++       ++ ++ +I   S  VD++A+ G +  A  + +    + D+ +W++
Sbjct: 366 QNLKLGKE-IQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDS-TVQKDLILWNT 423

Query: 511 ILRGCVAHGDKGLG----RKVAERMIELDPENACAY 542
           +L    A+ D GL     R   E  +E  P N   +
Sbjct: 424 LLS---AYADSGLSGEALRLFYEMQLESVPPNVITW 456



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 106/283 (37%), Gaps = 62/283 (21%)

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           +S    N E  EAL L  +M    +         +L  C     L  G+Q+H    K G 
Sbjct: 19  VSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKG- 77

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
                      D Y++                 +  +   ++  Y+ C  +E A+ +F  
Sbjct: 78  -----------DFYAR-----------------NEYIETKLVIFYAKCDALEIAQVLFSK 109

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           +  +++ SW ++I    + G    AL  F  M +  +  D F + +V  AC  +     G
Sbjct: 110 LRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFG 169

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------------------------- 419
             V   V   GL     +++SL D Y KCG                              
Sbjct: 170 RGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQN 229

Query: 420 ----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
               +A+ L +EMR  G++PT +T +  LSA  + G ++EG++
Sbjct: 230 GMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQ 272



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 45/223 (20%)

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           S+   +  L +NG   EAL L   M+  ++R+       ++  C     L  G+Q+ A++
Sbjct: 14  SYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQI 73

Query: 396 TIIG--LDSDQIISTSLVDFYCKC---------------------------------GYD 420
              G     ++ I T LV FY KC                                 G  
Sbjct: 74  LKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEG 133

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH----Y 476
           AL  F EM   G+ P       + + C  CG ++  +  F      Y     + H     
Sbjct: 134 ALMGFVEMLENGIFPDNFV---VPNVCKACGALQWSR--FGRGVHGYVAKAGLHHCVFVA 188

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           S + D++ + G L++A  + + +P    V  W++++ G V +G
Sbjct: 189 SSLADMYGKCGVLDDARKVFDYIPDRNAVA-WNALMVGYVQNG 230



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 17/191 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    + +  I   L+ MY +CG+   A  +F       
Sbjct: 530 LSACANLASLHFGRSIHGYIIRNQQYSFSAWIETSLVDMYAKCGDINKAERVFGSKLCSE 589

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHI 131
              +NAMI  +   G   +++ L+  +        N+ I+      L+A  YG+ ++  I
Sbjct: 590 LPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSL----LSACNYGRDVNQAI 645

Query: 132 LVNGLDFDSVLGSS--------LVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYA 182
            V   D  S  G          +V+L    G+ + A +++  M  +PD   + +L   + 
Sbjct: 646 EVFS-DMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQSL---FE 701

Query: 183 NCGKMNDARRV 193
           +C K +    V
Sbjct: 702 SCSKQHKTELV 712


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 165/607 (27%), Positives = 285/607 (46%), Gaps = 102/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C++   + +GK+ H   +K G + S   I   L+ MY++ G+   A  +FD + +R
Sbjct: 168 VLDACSSPAGLKLGKEFHAQVIKVGFV-SDFRIGTALVSMYVKGGSMDGARQVFDGLYKR 226

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  ++N MI G+ K G  EK+ QLF  M Q+    N  S+  ++ G +  +  AL +GK 
Sbjct: 227 DVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPE--ALAWGKA 284

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H+  +  GL  D  + ++L+ +Y                                 CG 
Sbjct: 285 VHAQCMNTGLVDDVRVATALIRMY-------------------------------MGCGS 313

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  ARRVFD+      V W  MI GY  N+   +A  LF  M+  G+  D  T   +++A
Sbjct: 314 IEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINA 373

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+S   L   +++H    + G   D++V +AL+  Y+K                      
Sbjct: 374 CASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAK---------------------- 411

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG I+DA+ +F  M  + ++SW++MI    +NG   EA + F  M + ++ 
Sbjct: 412 ---------CGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVE 462

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D  +  ++++AC ++ +L+LG +++ +     L S   +  +L++   K G        
Sbjct: 463 PDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYI 522

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL LF+ M     +P  +TF  +LSAC   G V
Sbjct: 523 FENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFV 582

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG+++F  +     I P +E Y CMVDL  RAG L+EA  LI +MP + +  +WS++L 
Sbjct: 583 EEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLA 642

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  +G+  +  + AER +  +P +   Y+QLS ++A +G WE  + +R +M  + V K 
Sbjct: 643 ACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKE 702

Query: 574 PGCSWAD 580
            GC+W +
Sbjct: 703 QGCTWIE 709



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 141/584 (24%), Positives = 254/584 (43%), Gaps = 101/584 (17%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L Q C       +GKQ+  H ++ G   +   + N L++++  CGN  +A   FD +  
Sbjct: 66  KLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYEL-NTLIKLHSICGNMLEARQTFDSVEN 124

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADLAALEYGKQI 127
           +   +WNA+I G+ +LGH +++  LF  M  +         LI   A +  A L+ GK+ 
Sbjct: 125 KTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEF 184

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H+ ++  G   D  +G++LV++Y K                                G M
Sbjct: 185 HAQVIKVGFVSDFRIGTALVSMYVKG-------------------------------GSM 213

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           + AR+VFD         +N MI GY  + +  +A  LF++M++ G   +  +  S+L  C
Sbjct: 214 DGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGC 273

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           S+   L  GK VH      G++DDV VA+AL+  Y   G    A ++F ++KV D +   
Sbjct: 274 STPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWT 333

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            MI  Y+    IED                               A  LF  M +  ++ 
Sbjct: 334 VMIRGYAENSNIED-------------------------------AFGLFATMQEEGIQP 362

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------Y 419
           D+ +   +I+ACA+ + L L  ++ ++V   G  +D ++ T+LV  Y KCG        +
Sbjct: 363 DRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVF 422

Query: 420 DALA-------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
           DA++                          F+ M+   V+P ++T+  +L+AC H G + 
Sbjct: 423 DAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALD 482

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            G + +     +  +   I   + ++++  + G +  A  + E M  + DV  W+ ++ G
Sbjct: 483 LGMEIY-TQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGG 540

Query: 515 CVAHGDKGLGRKVAERMI-ELDPENACAYIQLSSIFATSGEWEK 557
              HG+      + +RM+ E    N+  ++ + S  + +G  E+
Sbjct: 541 YSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEE 584


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 181/595 (30%), Positives = 283/595 (47%), Gaps = 111/595 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G ++H   LK G +     +A  L+ +Y R G   +A +LFDEM                
Sbjct: 169 GNKIHCLALKFGFMWDVY-VAASLIHLYCRYGAVVNARILFDEM---------------- 211

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD-FDSVL 142
                          P ++  SWN +ISG+ ++       G    +  L +GL   DSV 
Sbjct: 212 ---------------PTRDMGSWNAMISGYCQS-------GNAKEALTLSDGLRAMDSVT 249

Query: 143 GSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
             SL++   + GDFN    +    +    E + F  + LI  YA  G + D ++VFDR  
Sbjct: 250 VVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMY 309

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
               + WNS+I  Y  N +   A+LLF +MR + +  D  TL S+ S  S LG +   + 
Sbjct: 310 VRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRS 369

Query: 259 VHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           V G   + G  ++D+ +                                N ++ +Y+  G
Sbjct: 370 VQGFTLRKGWFLEDITIG-------------------------------NAVVVMYAKLG 398

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASV 375
            ++ A+ +F  +PNK +ISWN++I G +QNG   EA++++  M +   ++  ++ +  SV
Sbjct: 399 LVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSV 458

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALF-------- 425
           + AC+   +L  G ++  R+   GL  D  + TSL D Y KCG   DAL+LF        
Sbjct: 459 LPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNS 518

Query: 426 -----------------------NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                                   EM + GVKP  ITF  +LSAC H GLV EG+  F+ 
Sbjct: 519 VPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEM 578

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           M+  Y I P ++HY CMVDL+ RAG L  A+N I+ MP + D  +W ++L  C  HG+  
Sbjct: 579 MQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVD 638

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           LG+  +E + E++PE+   ++ LS+++A++G+WE    IR I   K + K PG S
Sbjct: 639 LGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWS 693



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 127/559 (22%), Positives = 229/559 (40%), Gaps = 112/559 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            ID +  L + C    S    K LH   +    + +   I+ +L+ +Y   GN   A   
Sbjct: 53  EIDDVHTLFRYCTNLQS---AKCLHARLVVSNAIQNVC-ISAKLVNLYCYLGNVALARYT 108

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY 123
           FD +  R+ ++WN MI G+ + G+  + ++ F++    +    +             +  
Sbjct: 109 FDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD 168

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G +IH   L  G  +D  + +SL++LY + G   +A  + + M   D    +A+ISGY  
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQ 228

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G                                  EAL L   +R      D+ T+ S+
Sbjct: 229 SGNAK-------------------------------EALTLSDGLR----AMDSVTVVSL 253

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSAC+  G    G  +H ++ K G+  ++ V++ L+D Y++ G   D  K+F  + V D 
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRD- 312

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                                         LISWNS+I     N  P+ A+ LF  M   
Sbjct: 313 ------------------------------LISWNSIIKAYELNEQPLRAILLFQEMRLS 342

Query: 364 DLRMD---KFSLASVIS------ACANISSLELGEQVF---------------------- 392
            ++ D     SLAS++S      AC ++    L +  F                      
Sbjct: 343 RIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDS 402

Query: 393 ARVTIIGLDSDQIIS-TSLVDFYCKCGY--DALALFNEMRNTG--VKPTIITFTAILSAC 447
           AR     L +  +IS  +++  Y + G+  +A+ ++N M   G  +     T+ ++L AC
Sbjct: 403 ARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPAC 462

Query: 448 DHCGLVKEGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
              G +++G K     +K   ++D  +   + + D++ + G L++A++L  Q+P    V 
Sbjct: 463 SQAGALRQGMKLHGRLLKNGLYLDVFVG--TSLADMYGKCGRLDDALSLFYQIPRVNSVP 520

Query: 507 MWSSIL--RGCVAHGDKGL 523
            W++++   G   HG+K +
Sbjct: 521 -WNTLIACHGFHGHGEKAV 538



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 176/449 (39%), Gaps = 102/449 (22%)

Query: 171 DFCLSA-LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-M 228
           + C+SA L++ Y   G +  AR  FD   +     WN MISGY      +E +  F   M
Sbjct: 85  NVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFM 144

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
             +G+  D  T  SVL AC ++     G ++H  A K G + DV VA++L+  Y + G  
Sbjct: 145 LSSGLQPDYRTFPSVLKACRNV---TDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAV 201

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
            +A  LF E+   D                               + SWN+MI G  Q+G
Sbjct: 202 VNARILFDEMPTRD-------------------------------MGSWNAMISGYCQSG 230

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
           +  EAL L   +      MD  ++ S++SAC        G  + +     GL+S+  +S 
Sbjct: 231 NAKEALTLSDGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286

Query: 409 SLVDFYCKCG--------YD-------------------------ALALFNEMRNTGVKP 435
            L+D Y + G        +D                         A+ LF EMR + ++P
Sbjct: 287 KLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQP 346

Query: 436 TIITFTAILSACDHCGLVK--EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
             +T  ++ S     G ++     + F   K  +  D  I   + +V ++A+ G ++ A 
Sbjct: 347 DCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIG--NAVVVMYAKLGLVDSAR 404

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
            +   +P   DV  W++I+ G   +   G   +  E    ++ E          I A  G
Sbjct: 405 AVFNWLP-NKDVISWNTIISG---YAQNGFASEAIEMYNIMEEEGG-------EISANQG 453

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSWADGI 582
            W              V  LP CS A  +
Sbjct: 454 TW--------------VSVLPACSQAGAL 468



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   ++  G +LH   LK G+      +   L  MY +CG   DAL LF ++PR 
Sbjct: 458 VLPACSQAGALRQGMKLHGRLLKNGLYLDVF-VGTSLADMYGKCGRLDDALSLFYQIPRV 516

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           N   WN +I      GH EK++ LF  M     + +  ++  L+S  + + L  ++ G+ 
Sbjct: 517 NSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGL--VDEGEW 574

Query: 127 IHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSA-NQVLNMMKEPDDFCLSALISG 180
               +  + G+         +V+LYG+ G    A N + +M  +PD     AL+S 
Sbjct: 575 CFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSA 630


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 297/609 (48%), Gaps = 68/609 (11%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           Y+A L    +  H  H G QLH   LK    +S   +AN L+ +Y +  +   AL LF++
Sbjct: 167 YVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPF-VANALVSLYAKHASFHAALKLFNQ 225

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
           +PRR+  SWN +I   ++    + + +LF  M   + F  +           A+L  G+Q
Sbjct: 226 IPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTASASLMEGQQ 285

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H+H +  GL+ D  +G+ L+  Y K G+ +    +   M+  D    + +++ Y   G 
Sbjct: 286 VHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGL 345

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +N A +VFD   + +SV +N++++G+  N +  EA+ LF +M   G+     +L SV+ A
Sbjct: 346 VNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDA 405

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF--SELKVYDTI 304
           C  LG  +  KQVHG A K G   +  V +ALLD Y++ G   DA K+F   EL+ + ++
Sbjct: 406 CGLLGDYKVSKQVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSV 465

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
           +   MI  Y+  G+ E+A ++F               VG S +G  I             
Sbjct: 466 VWTAMICGYARNGQPEEAIYLFH--------------VGRS-DGKVI------------- 497

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DAL 422
             MD+ + AS++  C  I  L++G+Q+   V   GL  +  +  ++V  Y KCG   DA+
Sbjct: 498 --MDEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAM 555

Query: 423 ALFN-------------------------------EMRNTGVKPTIITFTAILSACDHC- 450
            +F                                EM   G+KP  +TF  I+SA     
Sbjct: 556 KVFGDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTN 615

Query: 451 -GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
             LV + +  F++M+  Y I+P   HY+  + +    G L EA+  I  MPF+    +W 
Sbjct: 616 LNLVDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALETINNMPFQPSALVWR 675

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
            +L GC  H ++ +G+  A+ ++ L+P++   +I +S++++ SG W++S ++R+ MREK 
Sbjct: 676 VLLDGCRLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKG 735

Query: 570 VGKLPGCSW 578
             K P  SW
Sbjct: 736 FRKHPAQSW 744



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 186/390 (47%), Gaps = 20/390 (5%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---ADLAALEYGKQIHSHIL 132
           NA+I  ++KL     +L+LF  +P  N  S+  LIS  +K        L       SH+ 
Sbjct: 102 NALISTYLKLNLFPHALRLFLSLPSPNVVSYTTLISFLSKHRQHHALHLFLRMTTRSHLP 161

Query: 133 VNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            N   + +VL   SSL++ +      ++A         P  F  +AL+S YA     + A
Sbjct: 162 PNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSP--FVANALVSLYAKHASFHAA 219

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSS 249
            ++F++        WN++IS  + ++    A  LF  M+       D  TL+ +L+A +S
Sbjct: 220 LKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTASAS 279

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
              L  G+QVH HA K+G+  D+ V + L+  YSK G   D   LF  ++V D I    M
Sbjct: 280 ---LMEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEM 336

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           +T Y   G +  A  +F  MP K+ +S+N+++ G  +N    EA+ LF  M +  L +  
Sbjct: 337 VTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTD 396

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNE 427
           FSL SV+ AC  +   ++ +QV       G  S+  +  +L+D Y +CG   DA  +F  
Sbjct: 397 FSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMF-- 454

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                ++  +  F++++     CG  + GQ
Sbjct: 455 -----LRWELEEFSSVVWTAMICGYARNGQ 479



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 176/395 (44%), Gaps = 61/395 (15%)

Query: 147 VNLYGKCGDFNSANQV---LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
           +++  + GD + A  V   L    E D    +ALIS Y        A R+F      + V
Sbjct: 71  LHVSSRSGDTHLAKTVHATLLKRDEEDTHLSNALISTYLKLNLFPHALRLFLSLPSPNVV 130

Query: 204 MWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEH---GKQV 259
            + ++IS ++S +    AL LF +M  R+ +  +  T  +VL+ACSSL  L H   G Q+
Sbjct: 131 SYTTLIS-FLSKHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSL--LHHFHFGLQL 187

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H  A K    D   VA+AL+  Y+K      A KLF+++                     
Sbjct: 188 HAAALKTAHFDSPFVANALVSLYAKHASFHAALKLFNQI--------------------- 226

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISA 378
                     P + + SWN++I    Q+     A  LF NM   D  R+D F+L+ +++A
Sbjct: 227 ----------PRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTA 276

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPT 436
            A   SL  G+QV A    +GL++D  +   L+ FY K G   D   LF  MR   V   
Sbjct: 277 SA---SLMEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDV--- 330

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            IT+T +++A    GLV    K FD M  +  +      Y+ ++  F R     EA+ L 
Sbjct: 331 -ITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVS-----YNTVLAGFCRNEQGFEAMRLF 384

Query: 497 EQMPFEA----DVGMWSSILRGCVAHGDKGLGRKV 527
            +M  E     D  + +S++  C   GD  + ++V
Sbjct: 385 VRMVEEGLELTDFSL-TSVVDACGLLGDYKVSKQV 418


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 192/613 (31%), Positives = 289/613 (47%), Gaps = 108/613 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L + C++  ++   +Q+H   + K  ++S     N LL   +   N T A LLF  +
Sbjct: 21  LVFLAKQCSSSKTL---QQVHAQMVVKSSIHSP---NNHLLSKAIHLKNFTYASLLFSHI 74

Query: 68  -PRRNCFSWNAMIEGFMKLGHKEK-SLQLFNVMPQKN--DFSWNMLISGFAKADLAALEY 123
            P  N +++N MI       H    +L LF+ M   +    ++       + A+LA L  
Sbjct: 75  APHPNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSP 134

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            +  HS                                V  +    D     +LI+ Y+ 
Sbjct: 135 ARAAHS-------------------------------LVFKLALHSDPHTTHSLITMYSR 163

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLAS 242
           CG++  AR+VFD       V WNSMI+GY       EA+ +F +M RR+G   D  +L S
Sbjct: 164 CGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVS 223

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           VL AC  LG LE G+ V G   + G+  +  + SAL                        
Sbjct: 224 VLGACGELGDLELGRWVEGFVVERGMTLNSYIGSAL------------------------ 259

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                  I++Y+ CG +  A+ IF  M  + +I+WN++I G +QNG   EA+ LF  M +
Sbjct: 260 -------ISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKE 312

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
             +  +K +L +V+SACA I +L+LG+Q+    +  G   D  ++T+L+D Y KCG    
Sbjct: 313 DCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLAS 372

Query: 419 -----------------------------YDALALFNEMRNTG--VKPTIITFTAILSAC 447
                                         +AL+LF  M + G   +P  ITF  +LSAC
Sbjct: 373 AQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSAC 432

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV EG + FD M   + + P+IEHYSCMVDL ARAG L EA +LIE+MP + D   
Sbjct: 433 VHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVT 492

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
             ++L  C +  +  +G +V   ++E+DP N+  YI  S I+A    WE S+ +R +MR+
Sbjct: 493 LGALLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQ 552

Query: 568 KHVGKLPGCSWAD 580
           K + K PGCSW +
Sbjct: 553 KGITKTPGCSWIE 565


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 173/614 (28%), Positives = 289/614 (47%), Gaps = 105/614 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L +C       +GK +H   +  G L   + + N L+ MY +C     A LLF+   
Sbjct: 114 AGVLSACGQIKDFALGKVIHGLAIVCG-LGQQVFLTNLLIDMYCKCERIDHARLLFESSD 172

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYG 124
             +  SWN++I G+ ++G  E+ L+L   M       N F+    +          + YG
Sbjct: 173 ELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYG 232

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K +H + +  GLD D V+G++L+++Y K                                
Sbjct: 233 KTLHGYTVKQGLDLDIVVGTALLDMYAKT------------------------------- 261

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNE-----DTEALLLFHKMRRNGVLEDAST 239
           G + DA ++F  + + + VM+N+MI+G+I   +       EAL LF +M+R G+     T
Sbjct: 262 GYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFT 321

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            +S++  C+ +   E+GKQ+H H CK  +  D  + S                       
Sbjct: 322 FSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGS----------------------- 358

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                   T+I +YS  G  ED    F + P   ++SW +MI G +QNG    AL LF  
Sbjct: 359 --------TLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYE 410

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           +     + D+F + +++SACA++++   GEQV       G+ +  I+  S +  Y K G 
Sbjct: 411 LLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGN 470

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            DA+ LF  M++ G+ P  ITF  +L+A
Sbjct: 471 LDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTA 530

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GLV+EG +++++MK  Y +   ++H +C+VDL +RAG L +A N I    F     
Sbjct: 531 CSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPV 590

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           MW ++L GC  + D   G+ VAE++IELDP+ + +Y+ L +I+  +G    ++ IR++M+
Sbjct: 591 MWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMK 650

Query: 567 EKHVGKLPGCSWAD 580
           ++ + K PG SW +
Sbjct: 651 DRGIRKEPGQSWIE 664



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 149/560 (26%), Positives = 238/560 (42%), Gaps = 121/560 (21%)

Query: 9   ARLLQ-SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            +L+Q S  +  SIH GK  H H +K    N  L + N  L +Y + G   +A  LFD M
Sbjct: 13  TKLVQFSSKSGSSIH-GKLAHAHMIKTA-FNPCLFLLNNFLNLYSKWGEMGNAQKLFDRM 70

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             R+  S+N +I G+  +G   K++ LF+       + + FS+  ++S   +    AL  
Sbjct: 71  SERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFAL-- 128

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK IH   +V GL     L + L+++Y KC   + A  +     E D+   ++LI+GYA 
Sbjct: 129 GKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYAR 188

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G                                  E L L  KM   G+  +A TL S 
Sbjct: 189 VGAYE-------------------------------EMLKLLVKMHHTGLRLNAFTLGSA 217

Query: 244 LSAC--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           L +C  +    + +GK +HG+  K G+  D++V +ALLD Y+K G   DA +L       
Sbjct: 218 LKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQL------- 270

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS-----PIEALDL 356
                                   FRT PN++++ +N+MI G  Q          EAL L
Sbjct: 271 ------------------------FRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKL 306

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC- 415
           F  M +  ++   F+ +S+I  C +I + E G+Q+ A +    + SD+ I ++L++ Y  
Sbjct: 307 FSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSL 366

Query: 416 --------KC-----------------GY-------DALALFNEMRNTGVKPTIITFTAI 443
                   KC                 GY        ALALF E+  +G KP     T +
Sbjct: 367 LGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTM 426

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM----VDLFARAGCLNEAVNLIEQM 499
           LSAC      + G++        Y +   I   + +    + ++A++G L+ A    E++
Sbjct: 427 LSACADVAAERSGEQVHG-----YAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEI 481

Query: 500 PFEADVGMWSSILRGCVAHG 519
               DV  WS ++     HG
Sbjct: 482 K-NPDVVSWSVMICSNAQHG 500



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 37/243 (15%)

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           YS  G + +A+ +F  M  +S+IS+N +I G    G   +A+ LF       L++DKFS 
Sbjct: 54  YSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSY 113

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------- 417
           A V+SAC  I    LG+ +     + GL     ++  L+D YCKC               
Sbjct: 114 AGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDE 173

Query: 418 -----------GY-------DALALFNEMRNTGVKPTIITFTAILSAC--DHCGLVKEGQ 457
                      GY       + L L  +M +TG++    T  + L +C  +   +V  G 
Sbjct: 174 LDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYG- 232

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           K       +  +D +I   + ++D++A+ G L +A+ L    P + +V M+++++ G + 
Sbjct: 233 KTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQ-NVVMYNAMIAGFIQ 291

Query: 518 HGD 520
             D
Sbjct: 292 TED 294


>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1002

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 185/624 (29%), Positives = 314/624 (50%), Gaps = 60/624 (9%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-- 68
           L++C     I  G+ +H   +K G   +  + +A  L+ MY +CG   DA  +FDEMP  
Sbjct: 214 LKACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDEMPNR 273

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML-ISGF--AKADLAALEYGK 125
           +RN   WN+MI G+++ G   +++ LF  M  +     + + +SGF  A A+L A+E GK
Sbjct: 274 KRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSGFFSACANLEAVEEGK 333

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYANC 184
           Q H+ +++ G + + VLGSS++N Y K G       V   M    D+   + +IS Y   
Sbjct: 334 QGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLMISSYVQF 393

Query: 185 GKMNDARRVFDRTTDTSSVMWNSM-ISGYISNNEDTEALLLFHKMR----RNGVLEDAST 239
           G    A  +     +  ++ ++ + +S  ++   DT  + L  K+     RN    D + 
Sbjct: 394 GMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLHGFCIRNEFYSDMAV 453

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L+ VL   +  G ++  + V   A   G   D+++ + +L   +++G+  +A KLF +++
Sbjct: 454 LSGVLDMYAKCGIMDCARGVFHFA---GKKKDIVLWNTMLAACAEKGLSGEALKLFFQMQ 510

Query: 300 VY----DTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGS 349
           +     + +  N++I  +   G++ +A+ +F  M      PN  LI+W +MI GL+QNG 
Sbjct: 511 MESVPPNVVSWNSLIFGFFRNGQVVEAQDMFSEMQLSGVTPN--LITWTTMISGLAQNGL 568

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
             EA  +F  M    +R +  S+ S +SAC N++ L  G  +   V    +     I+TS
Sbjct: 569 GYEASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIHGYVMRNFMSFSLQITTS 628

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           ++D Y KCG                                  +ALALF E+   G+ P 
Sbjct: 629 IIDMYAKCGNLDDAKFVFIICSTKELPVYNAMISAYASHGKSAEALALFQELVKQGIMPD 688

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            ITFT++LSAC H  L+KEG + F  M  +  + P  +HY C+V L    G L+EA+ +I
Sbjct: 689 HITFTSVLSACSHGRLLKEGLELFKYMVCELQMKPSEKHYGCLVKLLTNDGQLDEALRII 748

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
             MP   D  +  S+L  C  + +  L   +A+ +++++P N   Y+ LS+++A  G+W+
Sbjct: 749 LTMPSPPDAHILGSLLAACGQNHETELANYIAKWLLKVEPNNPGNYVALSNVYAALGKWD 808

Query: 557 KSSLIRDIMREKHVGKLPGCSWAD 580
           + S IR  M+EK + K+PGCSW +
Sbjct: 809 EVSNIRGFMKEKGLKKIPGCSWIE 832



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 142/540 (26%), Positives = 254/540 (47%), Gaps = 78/540 (14%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLF 64
           D    LLQ C     + +G Q+H H +KKG   ST   + ++L+ +Y +C     A+  F
Sbjct: 104 DIYGELLQGCVYARDLSLGLQIHAHLIKKGSSYSTNEFVESKLVILYAKCNLTRVAVHFF 163

Query: 65  DEMPR-RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAAL 121
             + + +N FS+ A++    + G  +++L  +  M +K     N ++    KA   L  +
Sbjct: 164 RNVVKNQNLFSYAAIVGLQARNGLYKEALLSYVEMMEKGFCPDNFVVPNGLKACGGLRWI 223

Query: 122 EYGKQIHSHILVNGLDFDS--VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            +G+ IH  ++  G +FD    + +SLV++YGKCG    A +V + M  P+         
Sbjct: 224 GFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDEM--PNR-------- 273

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS- 238
                 K ND             V+WNSMI GY+ N  + EA+ LF KMR  G +E +  
Sbjct: 274 ------KRND-------------VVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEV 314

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           +L+   SAC++L  +E GKQ H     +G   + ++ S++++ YSK G+           
Sbjct: 315 SLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGL----------- 363

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLF 357
                               IE+ + +FR+M   K  ++WN MI    Q G   +AL++ 
Sbjct: 364 --------------------IEEVELVFRSMAVLKDEVTWNLMISSYVQFGMFEKALEMC 403

Query: 358 CNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
             M + + LR D  +L+S+++  A+   ++LG+++          SD  + + ++D Y K
Sbjct: 404 HWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLHGFCIRNEFYSDMAVLSGVLDMYAK 463

Query: 417 CGYD--ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
           CG    A  +F+     G K  I+ +  +L+AC   GL  E  K F  M+ +  + P + 
Sbjct: 464 CGIMDCARGVFH---FAGKKKDIVLWNTMLAACAEKGLSGEALKLFFQMQME-SVPPNVV 519

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHGDKGLGRKVAERM 531
            ++ ++  F R G + EA ++  +M       ++  W++++ G   +G      +V ++M
Sbjct: 520 SWNSLIFGFFRNGQVVEAQDMFSEMQLSGVTPNLITWTTMISGLAQNGLGYEASRVFQQM 579



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 134/592 (22%), Positives = 238/592 (40%), Gaps = 122/592 (20%)

Query: 16  NTHHSIHVGKQLHLHFLKKGILNSTLPIA--NRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           NT   +H+      H L      + LP+    +LL  +     P     + +  P+ N F
Sbjct: 11  NTLLPVHLENHTKHHSLPNPQCMACLPVTPKTQLLTTHSYSNPP-----ILNHTPKHNFF 65

Query: 74  -----SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS---WNMLISGFAKADLAALEYGK 125
                + +  I    K    ++++   + +PQ        +  L+ G   A    L  G 
Sbjct: 66  PTTNTTLHHQISFLCKNLKLQEAISTLSQLPQHTPIGPDIYGELLQGCVYAR--DLSLGL 123

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH+H++  G  + +                             ++F  S L+  YA C 
Sbjct: 124 QIHAHLIKKGSSYST-----------------------------NEFVESKLVILYAKCN 154

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNE-DTEALLLFHKMRRNGVLEDASTLASVL 244
               A   F       ++   + I G  + N    EALL + +M   G   D   + + L
Sbjct: 155 LTRVAVHFFRNVVKNQNLFSYAAIVGLQARNGLYKEALLSYVEMMEKGFCPDNFVVPNGL 214

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDD--VIVASALLDTYSKRGMPSDACKLFSELKVYD 302
            AC  L ++  G+ +HG   K+G   D  V VA++L+D Y K G+  DA K+F E     
Sbjct: 215 KACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDE----- 269

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSL--ISWNSMIVGLSQNGSPIEALDLFCNM 360
                                     MPN+    + WNSMIVG  QNG  +EA+ LF  M
Sbjct: 270 --------------------------MPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKM 303

Query: 361 N-KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
             +  +   + SL+   SACAN+ ++E G+Q  A V ++G + + ++ +S+++FY K G 
Sbjct: 304 RFEGGVEPSEVSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGL 363

Query: 419 --------------------------YDALALFNE-------MR-NTGVKPTIITFTAIL 444
                                     Y    +F +       MR    ++   +T +++L
Sbjct: 364 IEEVELVFRSMAVLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLL 423

Query: 445 SACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           +       VK G+K     ++ +++ D  +   S ++D++A+ G ++ A  +      + 
Sbjct: 424 ALAADTRDVKLGKKLHGFCIRNEFYSDMAV--LSGVLDMYAKCGIMDCARGVFHFAGKKK 481

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERM-IELDPENACAYIQLSSIFATSGE 554
           D+ +W+++L  C   G  G   K+  +M +E  P N  ++  L   F  +G+
Sbjct: 482 DIVLWNTMLAACAEKGLSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQ 533


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 166/528 (31%), Positives = 273/528 (51%), Gaps = 45/528 (8%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAD---LAALEYGKQIHSHILVNGLDFDSVLGSSLVN- 148
           +LF+ +PQ N F +N LI G++ +     + L Y + +   IL N      VL +     
Sbjct: 89  KLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKS 148

Query: 149 --LYGKCGDFNSANQVLNMMKEPDDFCL-SALISGYANCGKMNDARRVFDRTTDTSSVMW 205
               G C    S    L M       C+ +A+++ Y  CG +  ARRVFD  ++ + V W
Sbjct: 149 CYWLGVCVHAQSFK--LGMGSHA---CVQNAILNIYVACGLITSARRVFDDISERTLVSW 203

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
           NSMI+GY       EA+L+F +M+  G+  D  TL  +LS  +  G  + G+ VH H   
Sbjct: 204 NSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVV 263

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
            G+  D IV +AL+D Y+K G    A  +F ++   D +    MI  Y++ G I+ A   
Sbjct: 264 TGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEF 323

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           F  MP K+++SWNS+I    Q G   EA+DLF  M    +  +  +L +++S+C+++  L
Sbjct: 324 FNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDL 383

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------------- 418
            LG+Q  + +    +     +  +++D Y KCG                           
Sbjct: 384 ALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGAL 443

Query: 419 ------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                  +A+ +F +M+ +GV P  ITFT +LSAC H GLV  GQ +F+ M   + I P+
Sbjct: 444 ALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPD 503

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           +EHY+CMVDL  R G L EA++LI++MP + DV +WS++L  C  +G+  +G+++ ++++
Sbjct: 504 VEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLL 563

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           EL   N+  Y+ LS++++ S  W+    I  I+ +  + K    S+ +
Sbjct: 564 ELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIE 611



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 234/455 (51%), Gaps = 44/455 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C       +G  +H    K G + S   + N +L +Y+ CG  T A  +FD++  R
Sbjct: 140 VLKACAAKSCYWLGVCVHAQSFKLG-MGSHACVQNAILNIYVACGLITSARRVFDDISER 198

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
              SWN+MI G+ K+G  E+++ +F  M     + + F+   L+S   K      + G+ 
Sbjct: 199 TLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKH--GNFDLGRF 256

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H H++V G++ DS++ ++L+++Y KCG+   A  V + M + D    + +I+ YAN G 
Sbjct: 257 VHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGL 316

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           ++ A   F++    + V WNS+I  ++      EA+ LF++M  +GV+ + +TL ++LS+
Sbjct: 317 IDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSS 376

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS +G L  GKQ H +     + D+ I  SA                           L 
Sbjct: 377 CSHMGDLALGKQAHSY-----IFDNNITLSA--------------------------TLC 405

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +I +Y+ CG ++ A  +F  MP K+ +SWN +I  L+ +G   EA+++F  M    + 
Sbjct: 406 NAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVC 465

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGY--DALA 423
            D+ +   ++SAC++   ++ G+  F  + +  G+  D      +VD   + G   +A++
Sbjct: 466 PDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAIS 525

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
           L  +M    VKP ++ ++A+L AC   G +  G++
Sbjct: 526 LIKKMP---VKPDVVVWSALLGACRTYGNLAIGKQ 557



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 195/415 (46%), Gaps = 82/415 (19%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +L+  K +H+ I+++GL                      A QVL + K         L+S
Sbjct: 48  SLKQLKHVHAQIILHGL----------------------ATQVLTLGK---------LVS 76

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                  +  A ++FD+    +  M+N +I GY ++++  ++LLL+ +M  +G+L +  T
Sbjct: 77  SSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFT 136

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           +  VL AC++      G  VH  + K+                   GM S AC       
Sbjct: 137 IPFVLKACAAKSCYWLGVCVHAQSFKL-------------------GMGSHAC------- 170

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                + N ++ +Y +CG I  A+ +F  +  ++L+SWNSMI G S+ G   EA+ +F  
Sbjct: 171 -----VQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFRE 225

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M ++ L  D F+L  ++S      + +LG  V   + + G++ D I++ +L+D Y KCG 
Sbjct: 226 MQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGN 285

Query: 419 -YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
              A ++F++M +  V    +++T +++A  + GL+    ++F+ M  +      +  ++
Sbjct: 286 LKCAKSVFDQMLDKDV----VSWTCMINAYANHGLIDCALEFFNQMPGK-----NVVSWN 336

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWS------SILRGCVAHGDKGLGRK 526
            ++    + G   EAV+L  +M    D G+ +      +IL  C   GD  LG++
Sbjct: 337 SIIWCHVQEGLYAEAVDLFYRM---CDSGVMANDTTLVAILSSCSHMGDLALGKQ 388



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 158/396 (39%), Gaps = 101/396 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL     H +  +G+ +HLH +  GI   ++ + N L+ MY +CGN   A  +FD+M
Sbjct: 238 LVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSI-VTNALMDMYAKCGNLKCAKSVFDQM 296

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI----------------- 110
             ++  SW  MI  +   G  + +L+ FN MP KN  SWN +I                 
Sbjct: 297 LDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFY 356

Query: 111 ----SGFAKAD------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
               SG    D            +  L  GKQ HS+I  N +   + L ++++++Y KCG
Sbjct: 357 RMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCG 416

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
              +A  V   M E +                               +V WN +I     
Sbjct: 417 ALQTAMDVFFGMPEKN-------------------------------AVSWNVIIGALAL 445

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ--------------VH 260
           +    EA+ +F KM+ +GV  D  T   +LSACS  G ++ G+               V 
Sbjct: 446 HGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVE 505

Query: 261 GHAC-------------------KVGVIDDVIVASALLD---TYSKRGMPSDACKLFSEL 298
            +AC                   K+ V  DV+V SALL    TY    +     K   EL
Sbjct: 506 HYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLEL 565

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
             Y++ L   +  +YS   R +D K+I++ +    +
Sbjct: 566 GRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGI 601


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 178/607 (29%), Positives = 293/607 (48%), Gaps = 106/607 (17%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C+    +  GK +H   + +GI      ++N L+ MY RCG+   A  +FD    R+  S
Sbjct: 124 CSRAGRLREGKAVHALSVLEGIAGGVF-VSNSLVSMYARCGDMGQARQVFDAADERDDVS 182

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSH 130
           WNA++ G+++ G ++  L++F +M +     N F+   +I   A +D   ++    +H  
Sbjct: 183 WNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGC 242

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           ++  G D D  L S++V +                               YA  G +++A
Sbjct: 243 VVKAGFDSDVFLASAMVGM-------------------------------YAKKGALSEA 271

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDT------EALLLFHKMRRNGVLEDASTLASVL 244
             +F    D + V++N+MI+G   +          EAL L+ +++  G+     T +SV+
Sbjct: 272 VALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVI 331

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC+  G +E GKQ+HG   K     D  + SAL+D Y                      
Sbjct: 332 RACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLY---------------------- 369

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
            LN+        G +ED    F ++P + +++W +MI G  QN     AL LF  +    
Sbjct: 370 -LNS--------GCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAG 420

Query: 365 LRMDKFSLASVISACANISSLELGEQV--------FARVTIIG----------------- 399
           L+ D F+++SV++ACA+++    GEQ+        F R T +G                 
Sbjct: 421 LKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAV 480

Query: 400 -----LDSDQIIS-TSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                ++S  I+S ++++  + +  C  DAL  FNEM +  V P  ITF  +L+AC H G
Sbjct: 481 RRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTACSHGG 540

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV EG K+++ MK +Y + P I+H +C+VDL  RAG L +A   I    F  +  +W S+
Sbjct: 541 LVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVIWRSL 600

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  H D   G+ VA+R++EL P ++ +Y+ L +I+  +GE   +S IRD+M+E+ V 
Sbjct: 601 LASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSLASKIRDVMKERGVK 660

Query: 572 KLPGCSW 578
           K PG SW
Sbjct: 661 KEPGLSW 667



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 136/564 (24%), Positives = 239/564 (42%), Gaps = 128/564 (22%)

Query: 7   YLARLLQSCNT-HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           Y    L+SC+   H+  V    H H ++    + +L + N LL  Y R G    A  L D
Sbjct: 19  YYLHHLRSCSAPRHAAAV----HAHIVRAHP-SPSLFLRNTLLAAYCRLGG--HARRLLD 71

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMPQKNDFSWNMLISGFAKADLAA 120
           EMPR N  S+N +I+ + + G  E SL+ F     +   + + F++   ++  ++A    
Sbjct: 72  EMPRTNAVSFNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRA--GR 129

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L  GK +H+  ++ G+     + +SLV++Y +CGD   A QV +   E DD   +AL+SG
Sbjct: 130 LREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSG 189

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y   G  +D  RVF                                 MRR+G+  ++  L
Sbjct: 190 YVRAGAQDDMLRVFA-------------------------------MMRRSGIGLNSFAL 218

Query: 241 ASVLSAC--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
            SV+  C  S    ++    VHG   K G   DV +ASA++  Y+K+G  S+A  L    
Sbjct: 219 GSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVAL---- 274

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI------E 352
                                      F+++ + +++ +N+MI GL ++ + +      E
Sbjct: 275 ---------------------------FKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLRE 307

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL L+  +    +   +F+ +SVI AC     +E G+Q+  +V       D  I ++L+D
Sbjct: 308 ALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALID 367

Query: 413 FYCKCG---------------------------------YDALALFNEMRNTGVKPTIIT 439
            Y   G                                   AL LF+E+   G+KP   T
Sbjct: 368 LYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFT 427

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM----VDLFARAGCLNEAVNL 495
            +++++AC    + + G++        +        ++ M    + ++AR+G ++ AV  
Sbjct: 428 ISSVMNACASLAVARTGEQI-----QCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRR 482

Query: 496 IEQMPFEADVGMWSSILRGCVAHG 519
            ++M    D+  WS+++     HG
Sbjct: 483 FQEME-SHDIVSWSAVISSHAQHG 505



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 156/363 (42%), Gaps = 54/363 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++CN    I  GKQ+H   LK         I + L+ +Y+  G   D    F  +P++
Sbjct: 330 VIRACNLAGDIEFGKQIHGQVLKHCFQGDDF-IGSALIDLYLNSGCMEDGFRCFTSVPKQ 388

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  +W AMI G ++    E++L LF+ +     + + F+ + +++  A A LA    G+Q
Sbjct: 389 DVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMN--ACASLAVARTGEQ 446

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           I      +G    + +G+S +++Y + GD ++A +    M+  D    SA+IS +A  G 
Sbjct: 447 IQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGC 506

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
             DA R F           N M+   +  NE                     T   VL+A
Sbjct: 507 ARDALRFF-----------NEMVDAKVVPNE--------------------ITFLGVLTA 535

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIV-ASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           CS  G ++ G + +    +   +   I   + ++D   + G  +DA     E  + D+I 
Sbjct: 536 CSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADA-----EAFIRDSIF 590

Query: 306 LNTMI---TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            +  +   ++ +SC        I R M    L++   M +  S + S +   +++ +  +
Sbjct: 591 HDEPVIWRSLLASC-------RIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGE 643

Query: 363 LDL 365
           L L
Sbjct: 644 LSL 646


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 162/545 (29%), Positives = 280/545 (51%), Gaps = 86/545 (15%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKADLAALEYGK 125
           N FSWN  I GF+   +  +++ L+  + Q      +++++ +L    A+  L+ +  G 
Sbjct: 42  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACAR--LSLIRMGS 99

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +I  H+L   L FDS                             D F  +A+I    +CG
Sbjct: 100 EILGHVL--HLGFDS-----------------------------DIFVSNAVIHLLVSCG 128

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++ AR++FD++     V WNSMI+GY+      EAL  + +M+  G+  D  T+  V+S
Sbjct: 129 DLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVS 188

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           +C+ L  L+ G++ H +  + G+   V +A+AL+D Y K G       L S  K++D++ 
Sbjct: 189 SCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCG------NLESARKLFDSMT 242

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
             TM++  +          +F  MP+K ++ WN+MI G        EAL LF  M  +++
Sbjct: 243 NKTMVSWTT---------MLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNI 293

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             D+ ++ S +SAC+ + +L++G  +   +    L  +  + T+L+D Y KCG       
Sbjct: 294 NPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQ 353

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                     + A+A F+EM +  V P  +TF  +LSAC H GL
Sbjct: 354 VFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGL 413

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+EG+K+F  M  ++++ P+++HYSCMVDL  RAG L EA  LI+ MP EAD  +W ++ 
Sbjct: 414 VEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALF 473

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  HG+  +G + A +++++DP ++  Y+ L++++  +  W+++   R +MR++ V K
Sbjct: 474 FACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEK 533

Query: 573 LPGCS 577
            PGCS
Sbjct: 534 TPGCS 538



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 136/309 (44%), Gaps = 51/309 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA---------- 60
           ++ SC     + +G++ H +  + G L  T+P+AN L+ MYM+CGN   A          
Sbjct: 186 VVSSCAQLEDLDLGRESHCYIEENG-LKLTVPLANALMDMYMKCGNLESARKLFDSMTNK 244

Query: 61  ------LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISG 112
                  +LFDEMP ++   WNAMI G++     +++L LFN M   N       M+   
Sbjct: 245 TMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCL 304

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
            A + L AL+ G  IH +I  + L  +  LG++L+++Y KCG    A QV          
Sbjct: 305 SACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQV---------- 354

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
                                F      +S+ W ++ISG   +     A+  F +M  N 
Sbjct: 355 ---------------------FQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNS 393

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           V+ D  T   +LSAC   G +E G++     + K  +   +   S ++D   + G+  +A
Sbjct: 394 VMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEA 453

Query: 292 CKLFSELKV 300
            +L   + +
Sbjct: 454 EELIKSMPI 462


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 166/570 (29%), Positives = 278/570 (48%), Gaps = 63/570 (11%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R GN   A   F+ MP R   S+NA++ G+ +    + +L LF  MP ++  S+N LISG
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISG 88

Query: 113 F---------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
                     A A LA++ +   + S              +SL+  Y + G    A ++ 
Sbjct: 89  LSLRRQTLPDAAAALASIPFPPSVVSF-------------TSLLRGYVRHGLLADAIRLF 135

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
             M E +    + L+ G  + G++N+ARR+FD   D   V W +M+SGY      TEA  
Sbjct: 136 QQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARA 195

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           LF +M +  V+    +  +++S  +  G +   +++     +V    + +  +A+L  Y 
Sbjct: 196 LFDEMPKRNVV----SWTAMISGYAQNGEVNLARKLF----EVMPERNEVSWTAMLVGYI 247

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           + G   DA +LF+ +  +     N M+  +   G ++ AK +F  M  +   +W++MI  
Sbjct: 248 QAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKA 307

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
             QN   +EAL  F  M    +R +  S+ S+++ CA ++ L+ G +V A +     D D
Sbjct: 308 YEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMD 367

Query: 404 QIISTSLVDFYCKCG---------------------------------YDALALFNEMRN 430
               ++L+  Y KCG                                   AL +F++MR 
Sbjct: 368 VFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRL 427

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
            G+ P  IT+   L+AC + G VKEG++ F++M     I P  EHYSCMVDL  R+G + 
Sbjct: 428 AGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           EA +LI+ MP E D  +W +++  C  H +  +    A++++EL+P NA  Y+ LS I+ 
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYT 547

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           + G WE +S +R  +  +++ K PGCSW +
Sbjct: 548 SVGRWEDASKMRKFISSRNLNKSPGCSWIE 577



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 33/273 (12%)

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N  I   +  G IE A+  F  MP ++  S+N+++ G  +N  P  AL LF  M   DL 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDL- 79

Query: 367 MDKFSLASVISACANISSLELGEQVF----ARVTIIGLDSDQIISTSLVDFYCKCGY--D 420
                     S  A IS L L  Q      A +  I      +  TSL+  Y + G   D
Sbjct: 80  ---------ASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLAD 130

Query: 421 ALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
           A+ LF +M  RN       +++T +L      G V E ++ FD M      D ++  ++ 
Sbjct: 131 AIRLFQQMPERNH------VSYTVLLGGLLDAGRVNEARRLFDEMP-----DRDVVAWTA 179

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
           M+  + +AG + EA  L ++MP + +V  W++++ G   +G+  L RK+ E M E    N
Sbjct: 180 MLSGYCQAGRITEARALFDEMP-KRNVVSWTAMISGYAQNGEVNLARKLFEVMPE---RN 235

Query: 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
             ++  +   +  +G  E ++ + + M E  V 
Sbjct: 236 EVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA 268


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 166/610 (27%), Positives = 288/610 (47%), Gaps = 102/610 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +   +  GKQLH + LK G ++        LL +Y++CG+   A  +F+  
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAG-MSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
            R N   WN M+  + ++    KS ++F  M       N F++  ++          +E 
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCT--GQIEL 364

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIHS  + NG + D  +   L+++Y K    + A ++L M+++ D             
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRD------------- 411

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                              V W SMI+GY+ ++   EAL  F +M+  GV  D   LAS 
Sbjct: 412 ------------------VVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASA 453

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
            SAC+ +  +  G Q+H      G   D+ + + L++ Y++ G   +A  LF E+   D 
Sbjct: 454 ASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDE 513

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           I                               +WN +I G  Q+    +AL +F  M++ 
Sbjct: 514 I-------------------------------TWNGLISGFGQSRLYEQALMVFMKMSQA 542

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
             + + F+  S ISA AN++ ++ G+QV  R    G  S+  ++ +L+  Y KC      
Sbjct: 543 GAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDA 602

Query: 418 ---------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      G +AL LF++M+  G+KP  +TF  +L+AC H 
Sbjct: 603 KMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHV 662

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG  +F +M   Y ++P  +HY+C+VD+  RAG L+ A   +++MP  A+  +W +
Sbjct: 663 GLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRT 722

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +G   A+ ++EL+P ++ +Y+ LS+ +A +G+W     +R +M+++ +
Sbjct: 723 LLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGI 782

Query: 571 GKLPGCSWAD 580
            K PG SW +
Sbjct: 783 RKEPGRSWIE 792



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 229/528 (43%), Gaps = 108/528 (20%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           ++H   + +G+    L I N L+ +Y + G    A  +F E+  R+  SW AM+ G+ + 
Sbjct: 64  EIHATSVVRGLGADRL-IGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQR 122

Query: 86  GHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
           G  +++ +L++      V+P    +  + ++S   K  L A   G+ IH+ +       +
Sbjct: 123 GLGKEAFRLYSQMHWTAVIP--TPYVLSSVLSACTKGKLFA--QGRMIHAQVYKQAFCSE 178

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
           + +G++L+ LY   G F  A +V   M     FC                     DR T 
Sbjct: 179 TFVGNALIALYLGFGSFKLAERVFCDML----FC---------------------DRVT- 212

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
                +N++ISG+        AL +F +M+ +G+  D  T+AS+L+AC+S+G L+ GKQ+
Sbjct: 213 -----FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H +  K G+  D I   +LLD Y K                               CG I
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVK-------------------------------CGDI 296

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           E A  IF      +++ WN M+V   Q     ++ ++F  M    +  +KF+   ++  C
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTC 356

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK----------------------- 416
                +ELGEQ+ +     G +SD  +S  L+D Y K                       
Sbjct: 357 TCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWT 416

Query: 417 ---CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
               GY       +ALA F EM++ GV P  I   +  SAC     +++G +   A  + 
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYV 475

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
                +I  ++ +V+L+AR G   EA +L  ++  + ++  W+ ++ G
Sbjct: 476 SGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEI-TWNGLISG 522


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 175/591 (29%), Positives = 290/591 (49%), Gaps = 102/591 (17%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH   ++ G   S + +AN +L +Y +CG   DA  LF+ M  R+  SWN+++ G+ +LG
Sbjct: 168 LHACVIQYG-FGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLG 226

Query: 87  HKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVL 142
           +  + LQL   M     + +  ++  L+S  A A  + L  GK +H HIL  GL+ DS +
Sbjct: 227 NIREVLQLLIRMKTDGIEPDQQTFGSLVS--AAAMQSKLGVGKMVHGHILRAGLEQDSHI 284

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
            +SL+ +Y K                               CG +N A R+F+       
Sbjct: 285 ETSLIGMYLK-------------------------------CGNVNSAFRIFEGMMHKDV 313

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           + W +MISG + N+    A+ +F +M ++ V+   +T+ASVL+AC+ LG    G  VHG+
Sbjct: 314 ISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGY 373

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
                          +L    K  +PS                 N+++T+Y+ CG +E +
Sbjct: 374 ---------------ILRQRIKLDIPSQ----------------NSLVTMYAKCGHLEQS 402

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             +F  M  + ++SWN+++ G +QNG   +AL LF  M K   R D  ++ S++ ACA+I
Sbjct: 403 CSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASI 462

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD-------------- 420
            +L  G+ +   VT   L    +I T+LVD Y KCG        +D              
Sbjct: 463 GALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSII 522

Query: 421 -----------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                      AL ++++  +TG++P  + + +ILSAC H GLV +G  +F +M   + I
Sbjct: 523 AGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGI 582

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           +P +EH +C+VDL +RAG + EA +  ++M  +  + +   +L  C   G+  LG  VA 
Sbjct: 583 EPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAR 642

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            ++ L P NA  Y+QL+  +A+   W+    +   M+  H+ KLPG S+ +
Sbjct: 643 EIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIE 693



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 140/542 (25%), Positives = 225/542 (41%), Gaps = 99/542 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+++C +      G   H   +  G  +S   IA  L+  Y + G+   A  +FD M  R
Sbjct: 54  LVKACTSLDLFSHGLSFHQRVIVDG-YSSDSYIATSLINFYSKFGHNQSARKVFDTMDDR 112

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N   W  MI  + + G  + +  ++N+M ++     ++ + G     L  L + + +H+ 
Sbjct: 113 NVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVL-ELVHLQCLHAC 171

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           ++  G   D  L +S++N+Y KCG    A  +  +M   D    ++L+SGYA  G +   
Sbjct: 172 VIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIR-- 229

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                        E L L  +M+ +G+  D  T  S++SA +  
Sbjct: 230 -----------------------------EVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQ 260

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L  GK VHGH  + G+  D  + ++L+  Y K                          
Sbjct: 261 SKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLK-------------------------- 294

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                CG +  A  IF  M +K +ISW +MI GL QN     A+ +F  M K  +     
Sbjct: 295 -----CGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTA 349

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------- 419
           ++ASV++ACA + S  LG  V   +    +  D     SLV  Y KCG+           
Sbjct: 350 TIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRM 409

Query: 420 ----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                  AL LFNEMR    +P  IT  ++L AC   G + +G 
Sbjct: 410 SRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQG- 468

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           KW      +  + P I   + +VD++++ G L  A    ++MP + D+  WSSI+ G  +
Sbjct: 469 KWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGS 527

Query: 518 HG 519
           HG
Sbjct: 528 HG 529



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 157/340 (46%), Gaps = 43/340 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    S  +G  +H + L++ I    +P  N L+ MY +CG+   +  +FD M
Sbjct: 351 IASVLAACAELGSFPLGTSVHGYILRQRI-KLDIPSQNSLVTMYAKCGHLEQSCSVFDRM 409

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGK 125
            RR+  SWNA++ G  + GH  K+L LFN M +      ++ +     A A + AL  GK
Sbjct: 410 SRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGK 469

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH+ +  + L    ++ ++LV++Y KCGD  SA +  + M + D    S++I+GY + G
Sbjct: 470 WIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHG 529

Query: 186 KMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           K   A R++     T    + V++ S++S    N    + L  FH M ++  +E      
Sbjct: 530 KGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPR---- 585

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS--KRGMPS---------- 289
                      LEH       AC   ++D +  A  + + YS  KR  P           
Sbjct: 586 -----------LEH------RAC---IVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILL 625

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
           DAC+    +++ D +    +I   ++ G      H + +M
Sbjct: 626 DACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASM 665



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 152/388 (39%), Gaps = 81/388 (20%)

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           +N++I+   +     + LL +  M       DA T  S++ AC+SL    HG   H    
Sbjct: 16  YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
             G   D  +A++L++ YSK G    A K+F                             
Sbjct: 76  VDGYSSDSYIATSLINFYSKFGHNQSARKVFD---------------------------- 107

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
              TM +++++ W +MI   ++ G    A  ++  M +  ++    ++  ++S    +  
Sbjct: 108 ---TMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVH 164

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFN---------------- 426
           L+    + A V   G  SD  ++ S+++ YCKCG   DA ALF                 
Sbjct: 165 LQC---LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSG 221

Query: 427 ---------------EMRNTGVKPTIITFTAILSACD-----HCGLVKEGQKWFDAMKWQ 466
                           M+  G++P   TF +++SA         G +  G      ++  
Sbjct: 222 YAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQD 281

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
            HI+      + ++ ++ + G +N A  + E M    DV  W++++ G V +    +   
Sbjct: 282 SHIE------TSLIGMYLKCGNVNSAFRIFEGM-MHKDVISWTAMISGLVQNDCADMAVT 334

Query: 527 VAERMIELDPENACAYIQLSSIFATSGE 554
           V  RM++     + A I  +S+ A   E
Sbjct: 335 VFRRMLKSRVMPSTATI--ASVLAACAE 360



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 41/241 (17%)

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
           N +  S+N++I  LS  G+  + L  + +M   D   D  +  S++ AC ++     G  
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCGYD------------------------------ 420
              RV + G  SD  I+TSL++FY K G++                              
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129

Query: 421 ---ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
              A +++N MR  G++P+ +T   +LS      L     +   A   QY    ++   +
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLSGV----LELVHLQCLHACVIQYGFGSDVALAN 185

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
            M++++ + G + +A  L E M    DV  W+S++ G    G+    R+V + +I +  +
Sbjct: 186 SMLNVYCKCGRVEDAQALFELMDAR-DVISWNSLVSGYAQLGNI---REVLQLLIRMKTD 241

Query: 538 N 538
            
Sbjct: 242 G 242


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 155/503 (30%), Positives = 253/503 (50%), Gaps = 74/503 (14%)

Query: 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 215
           F     +L    + D F  ++LISGY+NCG      RVFD T D   V W +MI G++ N
Sbjct: 123 FQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRN 182

Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIV 274
           +   EA+  F +M+R+GV  +  T+ SVL A      +  G+ +HG   + G +  DV +
Sbjct: 183 DSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFI 242

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            S+L+D Y K                               CG  +DA+ +F  MP++++
Sbjct: 243 GSSLVDMYGK-------------------------------CGCYDDAQKVFDEMPSRNV 271

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
           ++W ++I G  Q     + + +F  M K D+  ++ +L+SV+SACA++ +L  G +V   
Sbjct: 272 VTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY 331

Query: 395 VTIIGLDSDQIISTSLVDFYCKCG---------------------------------YDA 421
           V    ++ +  + T+L+DFY KCG                                   A
Sbjct: 332 VIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGA 391

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           + LF+ M ++ V P  +TF  +LSAC H GLV+EG++ F +MK +++++P+ +HY+CMVD
Sbjct: 392 VDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVD 451

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
           LF R G L EA  LIE+MP E    +W ++   C+ H D  LG+  A R+I+L P ++  
Sbjct: 452 LFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGR 511

Query: 542 YIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDE 601
           Y  L+++++ S  W+  + +R  M+++ V K PGCSW +        +     +   FD+
Sbjct: 512 YTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIE--------VKGKLHEFIAFDD 563

Query: 602 IKQHQSADFCDYIHGFD-QARLP 623
            K  +S D    +     Q RLP
Sbjct: 564 KKPLESDDLYKTLDNVGVQMRLP 586



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 127/513 (24%), Positives = 216/513 (42%), Gaps = 100/513 (19%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q H H LK G  +S L + N L+  Y  CG       +FD    ++  SW AMI+GF++ 
Sbjct: 124 QFHAHILKFG-FDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRN 182

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGKQIHSHILVNG-LDFDSVL 142
               +++  F  M +    +  M +    KA   A  + +G+ IH   L  G +  D  +
Sbjct: 183 DSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFI 242

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
           GSSLV++YGKCG ++ A +V + M                       +R V         
Sbjct: 243 GSSLVDMYGKCGCYDDAQKVFDEMP----------------------SRNV--------- 271

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V W ++I+GY+      + + +F +M ++ V  +  TL+SVLSAC+ +G L  G++VH +
Sbjct: 272 VTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY 331

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
             K  +  +  V + L+D Y+K                               CG +E+A
Sbjct: 332 VIKNSIEINTTVGTTLIDFYAK-------------------------------CGCLEEA 360

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             +F  +  K++ +W +MI G + +G  I A+DLF  M    +  ++ +   V+SACA+ 
Sbjct: 361 ILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHG 420

Query: 383 SSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIIT 439
             +E G ++F  +     L+        +VD + + G   +A AL   M    ++PT   
Sbjct: 421 GLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERM---PMEPTNAV 477

Query: 440 FTAILSAC---------------------DHCG-------LVKEGQKWFDAMKWQYHIDP 471
           + A+  +C                      H G       L  E Q W D  + +  +  
Sbjct: 478 WGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRKQMKD 537

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           +    S         G L+E +   ++ P E+D
Sbjct: 538 QQVVKSPGCSWIEVKGKLHEFIAFDDKKPLESD 570



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 164/387 (42%), Gaps = 74/387 (19%)

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI---SGYISNNEDTEALLLFHK 227
           D  LS L+       +   ARR+  +    S  +W+S++   SG ++ N    + L + +
Sbjct: 36  DLFLSRLLRRCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRL-SFLSYRQ 94

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           MRRNGV+    T   +L A   L    +  Q H H  K G   D+ V             
Sbjct: 95  MRRNGVVPSRHTFPPLLKAVFKLR-DANPFQFHAHILKFGFDSDLFVR------------ 141

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
                              N++I+ YS+CG  E    +F    +K ++SW +MI G  +N
Sbjct: 142 -------------------NSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRN 182

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQII 406
            S +EA+  F  M +  +  ++ ++ SV+ A      +  G  +       G +  D  I
Sbjct: 183 DSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFI 242

Query: 407 STSLVDFYCKCG-YD--------------------------------ALALFNEMRNTGV 433
            +SLVD Y KCG YD                                 + +F EM  + V
Sbjct: 243 GSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDV 302

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
            P   T +++LSAC H G +  G++     +K    I+  +   + ++D +A+ GCL EA
Sbjct: 303 APNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVG--TTLIDFYAKCGCLEEA 360

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHG 519
           + + E++  E +V  W++++ G  AHG
Sbjct: 361 ILVFERLR-EKNVYTWTAMINGFAAHG 386



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 129/253 (50%), Gaps = 37/253 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++      +  G+ +H  +L+ G +   + I + L+ MY +CG   DA  +FDEMP R
Sbjct: 210 VLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSR 269

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
           N  +W A+I G+++    EK + +F  M +     N+ + + ++S  A A + AL  G++
Sbjct: 270 NVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLS--ACAHVGALHRGRR 327

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H +++ N ++ ++ +G++L++ Y KCG    A  V   ++E + +  +A+I+G+A  G 
Sbjct: 328 VHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGY 387

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
              A  +F           ++M+S ++S NE                     T   VLSA
Sbjct: 388 AIGAVDLF-----------HTMLSSHVSPNE--------------------VTFIVVLSA 416

Query: 247 CSSLGFLEHGKQV 259
           C+  G +E G+++
Sbjct: 417 CAHGGLVEEGRRL 429


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 167/549 (30%), Positives = 282/549 (51%), Gaps = 78/549 (14%)

Query: 73  FSWN-----AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
           F W+     ++I  + + G    +  LF+ MP ++  SWN +ISG  +   AA      +
Sbjct: 203 FQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA--QALDV 260

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV-LNMMKEPDDFCL---SALISGYAN 183
              + + G++ DSV  +S++ +  + GD ++A  + L ++K   +F L   +ALI+ YA 
Sbjct: 261 LDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAK 320

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G + DA++VF +      V WNS+I+ Y  N++   A   F KM+ NG+  D  TL S+
Sbjct: 321 FGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL 380

Query: 244 LSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
            S  +     ++ + VHG   + G +++ V++ +A++D Y+K G+               
Sbjct: 381 ASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGV--------------- 425

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                           I+ A  +F  +P K ++SWN++I G +QNG   EA++++  M +
Sbjct: 426 ----------------IDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEE 469

Query: 363 -LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
             ++++++ +  S+++A A++ +L+ G ++   +    L  D  + T L+D Y KCG   
Sbjct: 470 CREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLV 529

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                           AL LF EM++ GVKP  +TF ++LSAC 
Sbjct: 530 DAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACS 589

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV EG KWF  +  +Y I P ++HY CMVDL  RAG L  A + I+ MP   D  +W
Sbjct: 590 HSGLVDEG-KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIW 648

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L  C  HG+  LG+  ++R+ E+D EN   Y+ LS+I+A  G+WE    +R + RE+
Sbjct: 649 GALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARER 708

Query: 569 HVGKLPGCS 577
            + K PG S
Sbjct: 709 GLKKTPGWS 717



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 184/434 (42%), Gaps = 77/434 (17%)

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           K   +F    L++ YA+ G ++ +R  FD+        WNSMIS Y+ N    EA+  F+
Sbjct: 104 KIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFY 163

Query: 227 KMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           ++      + D  T   VL AC +   L  G+++H    K+G   DV VA++L+  YS+ 
Sbjct: 164 QLLLVTKFQADFYTFPPVLKACQT---LVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRF 220

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           G    A  LF +                               MP + + SWN+MI GL 
Sbjct: 221 GFVGIARSLFDD-------------------------------MPFRDMGSWNAMISGLI 249

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           QNG+  +ALD+   M    + MD  ++AS++  CA +  +     +   V   GL+ +  
Sbjct: 250 QNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELF 309

Query: 406 ISTSLVDFYCKCG--------------------------YD-------ALALFNEMRNTG 432
           +S +L++ Y K G                          Y+       A   F +M+  G
Sbjct: 310 VSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNG 369

Query: 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492
           ++P ++T  ++ S        K  +     +  +  +   +   + ++D++A+ G ++ A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE--RMIELDPE---NACAYIQLSS 547
             +   +P + DV  W++++ G   +   GL  +  E  RM+E   E   N   ++ + +
Sbjct: 430 HKVFNLIPVK-DVVSWNTLISG---YTQNGLASEAIEVYRMMEECREIKLNQGTWVSILA 485

Query: 548 IFATSGEWEKSSLI 561
            +A  G  ++   I
Sbjct: 486 AYAHVGALQQGMRI 499


>gi|5803274|dbj|BAA83584.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|55296350|dbj|BAD68395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596022|gb|EAZ35802.1| hypothetical protein OsJ_20095 [Oryza sativa Japonica Group]
          Length = 763

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 181/597 (30%), Positives = 277/597 (46%), Gaps = 77/597 (12%)

Query: 48  LQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN 107
           L M  R G    A   FD MP RN  SW AMI+G       + + QLF +MP KN  SW 
Sbjct: 177 LVMNHRVGYARKA---FDRMPVRNVVSWTAMIKGHFTAHEVDMAFQLFKLMPVKNSVSWC 233

Query: 108 MLISGF---------------------------------AKADLAALEYGKQIHSHILVN 134
           ++I GF                                 A A + ++  G+ IH   + +
Sbjct: 234 VMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKS 293

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           G  +D VL +SLV +Y K  D   A    + M+       +A++ GY    K+++AR++F
Sbjct: 294 GFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEARKLF 353

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           D   +   + WNSMI+GYI++    +A  L+ KM     LE A+ L   +S     G L+
Sbjct: 354 DSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKS-LEAATAL---MSWFIDNGMLD 409

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
             + +  +  ++    DV+  + LL  Y K G   DA  LF  ++    +  N MI+   
Sbjct: 410 KARDMFYNMPQI----DVMSCTTLLFGYVKGGHMDDALDLFHMMQKRTVVTYNVMISGLF 465

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
             G+I +A  +F   P +  ++W+ ++ GL+ NG   EAL  +  M   ++R  +  ++S
Sbjct: 466 HQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKMLLSNIRPSESVVSS 525

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------- 418
           +IS  +N S +  G+Q  A    IGLDS  +I  SL+  YCKCG                
Sbjct: 526 LISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSLISLYCKCGEMIIAQSIFDLMAKRD 585

Query: 419 -----------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                             +A+ +F  M    V P  ITF  +LSAC+H  L++E + +F+
Sbjct: 586 KVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDDITFLGVLSACNHMSLLEEAKYFFN 645

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
           AM   Y I P I HY+CMVDLF R   + EA  L++ MPFE D  +W+S+L GC   G+ 
Sbjct: 646 AMTCTYGILPNIMHYACMVDLFCRKCMIKEAEGLVKSMPFEPDSAIWTSLLSGCRLTGND 705

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            L    A ++I +DP     Y+ L S+   + +      +R  ++     K  G SW
Sbjct: 706 KLAEHAASQLIAIDPCTKMPYLHLISVHGLTNKSTVIDSLRSQIKSTATEKDVGYSW 762



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 231/494 (46%), Gaps = 60/494 (12%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           NRL+  ++R G    A  +FD MPRR+  SWN ++    + G   +++  F  M      
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFR 98

Query: 99  PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
           P    FS  +     A A L ALE G+ +H  +  +    +  +G+SL+ +Y  CG  + 
Sbjct: 99  PDHTSFSTAL----SACARLEALEMGRCVHGLVFKSCSSGNVFVGASLITMYANCGVVSC 154

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS-------- 210
             QVL+ ++ P+    +ALISG     ++  AR+ FDR    + V W +MI         
Sbjct: 155 LEQVLDGVESPNVALWNALISGLVMNHRVGYARKAFDRMPVRNVVSWTAMIKGHFTAHEV 214

Query: 211 -----------------------GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
                                  G++++ + +EA+ LF+ +  NG       L  +++A 
Sbjct: 215 DMAFQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIVNAF 274

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + +  +  G+ +HG A K G   D+++ ++L+  Y K    ++A   F +++       N
Sbjct: 275 AGMKSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVGSWN 334

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            M+  Y    +I++A+ +F +M N+  ISWNSMI G   +G   +A +L+  M +  L  
Sbjct: 335 AMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKSLE- 393

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALF 425
              +  +++S   +   L+    +F  +  I    D +  T+L+  Y K G+  DAL LF
Sbjct: 394 ---AATALMSWFIDNGMLDKARDMFYNMPQI----DVMSCTTLLFGYVKGGHMDDALDLF 446

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
           + M+    K T++T+  ++S   H G + E  K F+    +  +      +SC+V   A 
Sbjct: 447 HMMQ----KRTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVT-----WSCLVAGLAT 497

Query: 486 AGCLNEAVNLIEQM 499
            G ++EA+   ++M
Sbjct: 498 NGLIHEALQFYKKM 511



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 220/472 (46%), Gaps = 63/472 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L +++ +     SI  G+ +H   +K G     L +   L+ MY +  + T+A L FD+M
Sbjct: 267 LVKIVNAFAGMKSIRGGRCIHGLAVKSG-FAYDLVLEASLVLMYCKSLDITEARLEFDKM 325

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG-------------FA 114
              +  SWNAM+ G++     +++ +LF+ M  ++  SWN +I+G             ++
Sbjct: 326 EGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYS 385

Query: 115 KADLAALEYGKQIHSHILVNGL------------DFDSVLGSSLVNLYGKCGDFNSANQV 162
           K    +LE    + S  + NG+              D +  ++L+  Y K G  + A  +
Sbjct: 386 KMTEKSLEAATALMSWFIDNGMLDKARDMFYNMPQIDVMSCTTLLFGYVKGGHMDDALDL 445

Query: 163 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 222
            +MM++      + +ISG  + GK+ +A ++F+ +    SV W+ +++G  +N    EAL
Sbjct: 446 FHMMQKRTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEAL 505

Query: 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
             + KM  + +    S ++S++S  S+   + HG+Q H    K+G           LD++
Sbjct: 506 QFYKKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIG-----------LDSH 554

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
                                ++ N++I++Y  CG +  A+ IF  M  +  ++WN++I 
Sbjct: 555 --------------------LLIQNSLISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIH 594

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLD 401
           G + N     A+++F +M K  +  D  +   V+SAC ++S LE  +  F  +T   G+ 
Sbjct: 595 GYALNNLGQNAVEMFESMTKAQVDPDDITFLGVLSACNHMSLLEEAKYFFNAMTCTYGIL 654

Query: 402 SDQIISTSLVDFYC-KCGY-DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
            + +    +VD +C KC   +A  L   M     +P    +T++LS C   G
Sbjct: 655 PNIMHYACMVDLFCRKCMIKEAEGLVKSMP---FEPDSAIWTSLLSGCRLTG 703



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 166/402 (41%), Gaps = 64/402 (15%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L++ +   G++  AR VFD       V WN++++          A+  F +MRR G   D
Sbjct: 41  LMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFRPD 100

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
            ++ ++ LSAC+ L  LE G+ VHG   K     +V V ++L+  Y+  G+ S   ++  
Sbjct: 101 HTSFSTALSACARLEALEMGRCVHGLVFKSCSSGNVFVGASLITMYANCGVVSCLEQVLD 160

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            ++  +  L N +I+      R+  A+  F  MP ++++SW +MI G         A  L
Sbjct: 161 GVESPNVALWNALISGLVMNHRVGYARKAFDRMPVRNVVSWTAMIKGHFTAHEVDMAFQL 220

Query: 357 F-----------CNMNKLDLRMDKFS--------------------LASVISACANISSL 385
           F           C M    +  +KFS                    L  +++A A + S+
Sbjct: 221 FKLMPVKNSVSWCVMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSI 280

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--GYDALALFNEMRNTGVKPTIITFTAI 443
             G  +       G   D ++  SLV  YCK     +A   F++M    V     ++ A+
Sbjct: 281 RGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVG----SWNAM 336

Query: 444 LSACDHCGLVKEGQKWFDAM------KWQYHIDPEI---------EHYSCMVD------- 481
           L    +   + E +K FD+M       W   I+  I         E YS M +       
Sbjct: 337 LCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKSLEAAT 396

Query: 482 ----LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
                F   G L++A ++   MP + DV   +++L G V  G
Sbjct: 397 ALMSWFIDNGMLDKARDMFYNMP-QIDVMSCTTLLFGYVKGG 437



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 98/212 (46%), Gaps = 8/212 (3%)

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N ++  +   GR+E A+ +F  MP + ++SWN+++   ++ GS   A+  F  M +   R
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFR 98

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFN 426
            D  S ++ +SACA + +LE+G  V   V       +  +  SL+  Y  CG   ++   
Sbjct: 99  PDHTSFSTALSACARLEALEMGRCVHGLVFKSCSSGNVFVGASLITMYANCG--VVSCLE 156

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           ++ +    P +  + A++S       V   +K FD M  +      +  ++ M+     A
Sbjct: 157 QVLDGVESPNVALWNALISGLVMNHRVGYARKAFDRMPVR-----NVVSWTAMIKGHFTA 211

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
             ++ A  L + MP +  V  W  ++ G V H
Sbjct: 212 HEVDMAFQLFKLMPVKNSVS-WCVMIGGFVTH 242


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 187/680 (27%), Positives = 317/680 (46%), Gaps = 146/680 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++R+L+ C        G+QLH   +K G   + + +   L+ MYM+CG   D  ++F+ M
Sbjct: 102 VSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGM 161

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P+RN  +W +++ G+++       + LF  M  +    N F++  ++S  A A   A++ 
Sbjct: 162 PKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLS--AVASQGAVDL 219

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+++H+  +  G      + +SL+N+Y K                               
Sbjct: 220 GRRVHAQSVKFGCRSTVFVCNSLINMYSK------------------------------- 248

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG + +A+ VF +      V WN++++G + N    EAL LFH  R +      ST ++V
Sbjct: 249 CGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTV 308

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----------MPSD-- 290
           +  C++L  L   +Q+H    K G   D  V +A++D YSK G           MP    
Sbjct: 309 IKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQN 368

Query: 291 -------------------ACKLFSELK---------VYDTILL---------------- 306
                              A  LFS ++          Y T+L                 
Sbjct: 369 VVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIK 428

Query: 307 ----------NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                       ++  YS  G  E+A  IF+ + +K +++W++M+   SQ G    A ++
Sbjct: 429 TNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNV 488

Query: 357 FCNMNKLDLRMDKFSLASVISACANISS-LELGEQ------------------------- 390
           F  M+   ++ ++F+++S I ACA+ ++ ++ G Q                         
Sbjct: 489 FIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYA 548

Query: 391 ----------VFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTII 438
                     VF R T    D D +   S++  Y + GY  +AL  F +M   G++    
Sbjct: 549 RKGSIDSARIVFERQT----DRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGA 604

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TF A++  C H GLVKEGQ++FD+M   ++I P +EHYSCMVDL++RAG L+E +NLIE 
Sbjct: 605 TFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEG 664

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MPF A   +W ++L  C  H +  LG+  A++++ L+P+++  Y+ LS+I+A +G W++ 
Sbjct: 665 MPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKER 724

Query: 559 SLIRDIMREKHVGKLPGCSW 578
             +R +M  K V K  GCSW
Sbjct: 725 DEVRKLMDSKKVKKEAGCSW 744



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 188/431 (43%), Gaps = 82/431 (19%)

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G  +   + V GL  D V G  L  L  KCG F+ A   +           +AL+  Y  
Sbjct: 99  GAAVSRVLKVCGLIPDRVSGEQLHCLCVKCG-FDRAEVGVG----------TALVDMYMK 147

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG + D R VF+     + V W S+++GY+     ++ + LF +MR  GV  +  T  SV
Sbjct: 148 CGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSV 207

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSA +S G ++ G++VH  + K G    V V ++L++ YSK       C L  E K    
Sbjct: 208 LSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSK-------CGLVEEAKA--- 257

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                                +FR M  + ++SWN+++ GL  N   +EAL LF +    
Sbjct: 258 ---------------------VFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRAS 296

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DA 421
             ++ + + ++VI  CAN+  L L  Q+ + V   G  SD  + T+++D Y KCG   DA
Sbjct: 297 MAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDA 356

Query: 422 L--------------------------------ALFNEMRNTGVKPTIITFTAILSACDH 449
                                            ALF+ MR   VKP   T++ +L+A   
Sbjct: 357 FNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIP 416

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
             L    Q     +K  Y   P +   + ++  +++ G   EA+++ + +  + DV  WS
Sbjct: 417 ILL---PQIHAQIIKTNYQHAPSVG--TALLASYSKLGNTEEALSIFKMIDHK-DVVAWS 470

Query: 510 SILRGCVAHGD 520
           ++L      GD
Sbjct: 471 AMLSCYSQAGD 481


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 167/528 (31%), Positives = 271/528 (51%), Gaps = 50/528 (9%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILV-NGLDFDSVLGSSLVN--L 149
           ++ N     N FSWNM I G+ +++         I++ +L  N L   S +  +     L
Sbjct: 109 KILNNAANLNXFSWNMAIRGYVESE-------NPINAVLLYRNMLRKGSAIPDNYTYPLL 161

Query: 150 YGKCGDFN---SANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
           +  C  F+   +AN++L  + +     D F  +A+I    +CG++  AR++FD +     
Sbjct: 162 FKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDL 221

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V WNS+I+GY+      EA  L++KM    V+ D  T+  V+SA + L  L  G+++H  
Sbjct: 222 VSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQS 281

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
             ++G+   V +A+AL+D Y K      A  LF  +     +   TM+  Y+  G +E A
Sbjct: 282 IEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESA 341

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             +F  MP K ++ WN++I G  Q     EAL LF  M    +  DK ++ + +SAC+ +
Sbjct: 342 VRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQL 401

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------ 418
            +L++G  +   V    L  +  + T+LVD Y KCG                        
Sbjct: 402 GALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAII 461

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                    + A++ F+EM + G+ P  ITF  +LSAC H GLV +G+ +F  M  +Y I
Sbjct: 462 CGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGI 521

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P+++HYSC+VDL  RAG L EA  LI  MPFE D  +W ++  G   HG+  +G + A 
Sbjct: 522 SPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAAS 581

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +++ELDP +   Y+ L++++  +  WE++  +R +M E+ V K PGCS
Sbjct: 582 KLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCS 629


>gi|225217042|gb|ACN85326.1| EMB2261 putative [Oryza brachyantha]
          Length = 626

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 175/603 (29%), Positives = 284/603 (47%), Gaps = 104/603 (17%)

Query: 18  HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPRRNCFSWN 76
           H    +G  +H    + G+L     +AN LL  Y+R       AL  FD++PRR+  + +
Sbjct: 50  HPPPRLGYCIHARAARGGLLADRY-LANALLSFYVRLPRHLPHALRAFDDLPRRDVVAHS 108

Query: 77  AMIEGFMKLGHKEKSL-QLFNVMPQKNDFSWNM-LISGFAKA--DLAALEYGKQIHSHIL 132
           +++  F++ G   ++L  L +++ + +D S N    S   KA   L     G  +H  IL
Sbjct: 109 SILAAFLRAGMPRRALASLRSMLAEADDVSPNAHAFSAAVKACSVLRDRNAGACLHGSIL 168

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
           V G   D ++ S+LV++YG     + A +    M+ PD  C                   
Sbjct: 169 VRGFGDDDIVLSALVDMYGHASAPSDAQKAFEEMRAPDGIC------------------- 209

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLG 251
                       + S+IS ++ N+   EA+  F  M   NGV  D  T  S+++A  +L 
Sbjct: 210 ------------YTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLK 257

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
               G+Q H      G+  +VIV S+ LD Y+K                           
Sbjct: 258 RENQGRQAHAQVVTRGLCGNVIVESSTLDMYAK--------------------------- 290

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
               CG + +A+ +F  M  ++ +SW +++ G  QNG   + + LF  M+K D   D +S
Sbjct: 291 ----CGSMVEARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREMDKKD--GDWYS 344

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------ 419
           L +V+ ACA +SS++ G+++  R   +G   D ++ ++LVD Y KCG             
Sbjct: 345 LGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEAST 404

Query: 420 ---------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                 A+ LF+ M   G +P  I+F ++L AC H G+V++G+K
Sbjct: 405 VRNTITWNAMIGGFAQNGHGERAINLFDRMVREGPRPDYISFVSVLFACSHTGMVEQGRK 464

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
           +F++M   Y I P IEHY+CMVDL +R   L EA +LI + PF  D  +W++IL     H
Sbjct: 465 YFNSMSNNYTIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRGDSSLWAAILGASATH 524

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            +  +  +VA++M+EL P+   +Y+ L +++ T G WE +  IR +M  + V K PG SW
Sbjct: 525 SNPDVAERVAKKMMELQPQYHLSYVLLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSW 584

Query: 579 ADG 581
            D 
Sbjct: 585 IDA 587



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 166/385 (43%), Gaps = 70/385 (18%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +++C+     + G  LH   L +G  +  + + + L+ MY     P+DA   F+EM   +
Sbjct: 148 VKACSVLRDRNAGACLHGSILVRGFGDDDI-VLSALVDMYGHASAPSDAQKAFEEMRAPD 206

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG---FAKADLAALEYGKQIH 128
              + ++I  F++    E++++ F  M   N    +    G    A  +L     G+Q H
Sbjct: 207 GICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRENQGRQAH 266

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           + ++  GL  + ++ SS +++Y KCG    A +V                          
Sbjct: 267 AQVVTRGLCGNVIVESSTLDMYAKCGSMVEARKV-------------------------- 300

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSAC 247
                FDR    + V W +++ GY  N E  + + LF +M +++G   D  +L +VL AC
Sbjct: 301 -----FDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREMDKKDG---DWYSLGTVLRAC 352

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           + L  ++ GK++H    ++G   DV+V SAL+D Y+K G    A  +F    V +TI  N
Sbjct: 353 AGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEASTVRNTITWN 412

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            MI                                G +QNG    A++LF  M +   R 
Sbjct: 413 AMIG-------------------------------GFAQNGHGERAINLFDRMVREGPRP 441

Query: 368 DKFSLASVISACANISSLELGEQVF 392
           D  S  SV+ AC++   +E G + F
Sbjct: 442 DYISFVSVLFACSHTGMVEQGRKYF 466



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 7/123 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C    S+  GK++H  FL+ G     + + + L+ +Y +CG    A  +F+  
Sbjct: 345 LGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVV-VESALVDLYAKCGAVDYAYTVFEAS 403

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             RN  +WNAMI GF + GH E+++ LF+ M    P+ +  S+  ++  FA +    +E 
Sbjct: 404 TVRNTITWNAMIGGFAQNGHGERAINLFDRMVREGPRPDYISFVSVL--FACSHTGMVEQ 461

Query: 124 GKQ 126
           G++
Sbjct: 462 GRK 464


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 174/560 (31%), Positives = 265/560 (47%), Gaps = 107/560 (19%)

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFA 114
           LLLFD +     F WN +I GF      +  L  ++      V+P ++ F   +L+  F+
Sbjct: 58  LLLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFP--LLLKAFS 115

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           K      E   Q ++HI+  GLDFD+                               F  
Sbjct: 116 KLRN---ENPFQFYAHIVKFGLDFDA-------------------------------FVQ 141

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           ++L+S +A+CG ++ +RR+F  T     V W ++I+G + N    EAL  F +MR +GV 
Sbjct: 142 NSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVE 201

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACK 293
            D  T+ SVL A + L  +  G+ VHG   + G VI DV V SAL+D YSK         
Sbjct: 202 VDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSK--------- 252

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                                 CG  +DA  +F  MP ++L+SW ++I G  Q     EA
Sbjct: 253 ----------------------CGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEA 290

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L +F  M    +  ++ ++ S ++ACA + SL+ G  +   V    L  +  + T+LVD 
Sbjct: 291 LKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDM 350

Query: 414 YCKCG---------------------------------YDALALFNEMRNTGVKPTIITF 440
           Y KCG                                   +L LF++M  + V+P  +TF
Sbjct: 351 YSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTF 410

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H GLV EG + F  M   Y ++P ++HY CMVDL  RAG L EA+  IE MP
Sbjct: 411 LGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMP 470

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E   G+W ++  GC+ H    LG  +   +I+L P ++  YI L+++++   +WE ++ 
Sbjct: 471 MEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAAN 530

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +M+ K V K PGCSW +
Sbjct: 531 VRRLMKGKGVDKSPGCSWIE 550



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 131/287 (45%), Gaps = 42/287 (14%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H  +++ G +   + + + L+ MY +CG   DA+ +F+EMP RN  SW A+I G++
Sbjct: 223 GRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYV 282

Query: 84  KLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           +    +++L++F  M      P ++  +  +     A A L +L+ G+ +H ++  + L 
Sbjct: 283 QCNRYKEALKVFQEMIIEGIEPNQSTVTSALT----ACAQLGSLDQGRWLHEYVDRSKLG 338

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            +S LG++LV++Y KCG  + A  V   +   D +                         
Sbjct: 339 LNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVY------------------------- 373

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                  W +MI+G     +   +L LF +M R+ V  +  T   VLSAC+  G ++ G 
Sbjct: 374 ------PWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGL 427

Query: 258 QVHG-HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           ++     C   +  +V     ++D   + G   +A K    + +  T
Sbjct: 428 ELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPT 474


>gi|357124385|ref|XP_003563881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 670

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 187/612 (30%), Positives = 283/612 (46%), Gaps = 103/612 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L+  C     I  G Q+H   +K G+      +A  L+ MY +CG    +  +F   
Sbjct: 106 LGALVSGCARASDIVAGSQVHASAVKFGVAGDE-SVAGALVDMYSKCGCVDSSWRVFALS 164

Query: 68  PRRNCFSWNAMIEGFM----KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--L 121
           P+R+  SW +MI   +      GH++ +L L   M     +  N   S   K   A   L
Sbjct: 165 PQRSVVSWTSMIACLVNNDGSSGHRDAALSLLRKMLLLKIWPTNATFSCILKVFDAPGLL 224

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             GKQIH  +L  G + D  LG++L+ +YG+CG  +   ++                   
Sbjct: 225 PGGKQIHGCLLKMGTEVDPALGTALIAMYGRCGGVDEIAKL------------------- 265

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
            +C   +DA   F RT         S+   Y  N    EA+  F +M    +  D ST+ 
Sbjct: 266 -SCRIRHDA---FSRT---------SLFVAYARNGYSMEAVWNFREMVMEKMAIDQSTIT 312

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           S+L  CSSLG L   ++VH +A K                            LF      
Sbjct: 313 SLLQVCSSLGQLRLAEEVHCYALKT---------------------------LFK----L 341

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           DT LLN  ITVY  CG I  A+ IF  + NK +ISW +++   +QN  P E L  F  M 
Sbjct: 342 DTSLLNATITVYGRCGDIATAEIIFDLLENKDIISWTALLTCYAQNDLPQETLLFFKEML 401

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--Y 419
           +  L    F + SV+ AC++ ++  +G Q+ +R   +G+D    +  +LV  Y KCG  +
Sbjct: 402 RKGLGSPIFCITSVLRACSSTTNHAVGRQIHSRAVKLGIDDADSVENALVTMYAKCGSVH 461

Query: 420 DALALFNEMRNTGVK-------------------------------PTIITFTAILSACD 448
            AL +FN MR+ G+                                P   TF  +LS+C 
Sbjct: 462 IALKIFNSMRSRGIISWNALITSFSQHGNEVAAIQLFDLMQEEGICPDDYTFVGLLSSCS 521

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
             GL+ EG ++F  MK  Y+++P++EHY+CMVDLFARAG  ++A+  I+ +P + D  +W
Sbjct: 522 RMGLIAEGCEYFKQMKALYNVEPKMEHYTCMVDLFARAGRFSDALEFIDALPCQPDQLVW 581

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L  C  HG+  LGR  A++++E+ PE+   YI LS+I A+   WE+ +  R +   +
Sbjct: 582 EALLASCRTHGNVELGRLAAKKILEIRPEDPSPYITLSNIHASVHMWEEKTWDRTVFDFQ 641

Query: 569 HVGKLPGCSWAD 580
            V K  G SW D
Sbjct: 642 RVRKYAGSSWVD 653



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 137/537 (25%), Positives = 228/537 (42%), Gaps = 69/537 (12%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D+LA LL     H S      +H   +K G L ST  + N LL  Y R   P +A  LFD
Sbjct: 3   DHLAALLLRGGRHPS-----TVHGAAVKLGFLASTY-LCNNLLLSYFRSSLPAEARGLFD 56

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---------PQKNDFSWNMLISGFAKA 116
           EMP RN  S + +I    +LG   ++  LF+ M          + N F+   L+SG A+A
Sbjct: 57  EMPHRNVVSCSVLISNVSRLGALCEAFLLFSDMLLSGGRGSYDRPNSFALGALVSGCARA 116

Query: 117 -DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
            D+ A   G Q+H+  +  G+  D  +  +LV++Y KCG  +S                 
Sbjct: 117 SDIVA---GSQVHASAVKFGVAGDESVAGALVDMYSKCGCVDS----------------- 156

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT----EALLLFHKMRRN 231
                         + RVF  +   S V W SMI+  ++N+  +     AL L  KM   
Sbjct: 157 --------------SWRVFALSPQRSVVSWTSMIACLVNNDGSSGHRDAALSLLRKMLLL 202

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
            +    +T + +L    + G L  GKQ+HG   K+G   D  + +AL+  Y + G   + 
Sbjct: 203 KIWPTNATFSCILKVFDAPGLLPGGKQIHGCLLKMGTEVDPALGTALIAMYGRCGGVDEI 262

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
            KL   ++ +D     ++   Y+  G   +A   FR M  + +    S I  L Q  S +
Sbjct: 263 AKLSCRIR-HDAFSRTSLFVAYARNGYSMEAVWNFREMVMEKMAIDQSTITSLLQVCSSL 321

Query: 352 EAL----DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
             L    ++ C   K   ++D   L + I+       +   E +F       L++  IIS
Sbjct: 322 GQLRLAEEVHCYALKTLFKLDTSLLNATITVYGRCGDIATAEIIFDL-----LENKDIIS 376

Query: 408 -TSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
            T+L+  Y +     + L  F EM   G+   I   T++L AC        G++   +  
Sbjct: 377 WTALLTCYAQNDLPQETLLFFKEMLRKGLGSPIFCITSVLRACSSTTNHAVGRQ-IHSRA 435

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
            +  ID      + +V ++A+ G ++ A+ +   M     +  W++++     HG++
Sbjct: 436 VKLGIDDADSVENALVTMYAKCGSVHIALKIFNSMRSRGIIS-WNALITSFSQHGNE 491


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 166/570 (29%), Positives = 278/570 (48%), Gaps = 63/570 (11%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R GN   A   F+ MP R   S+NA++ G+ +    + +L LF  MP ++  S+N LISG
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISG 88

Query: 113 F---------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
                     A A LA++ +   + S              +SL+  Y + G    A ++ 
Sbjct: 89  LSLRRQTLPDAAAALASIPFPPSVVSF-------------TSLLRGYVRHGLLADAIRLF 135

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
             M E +    + L+ G  + G++N+ARR+FD   D   V W +M+SGY      TEA  
Sbjct: 136 QQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARA 195

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           LF +M +  V+    +  +++S  +  G +   +++     +V    + +  +A+L  Y 
Sbjct: 196 LFDEMPKRNVV----SWTAMISGYAQNGEVNLARKLF----EVMPERNEVSWTAMLVGYI 247

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           + G   DA +LF+ +  +     N M+  +   G ++ AK +F  M  +   +W++MI  
Sbjct: 248 QAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKA 307

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
             QN   +EAL  F  M    +R +  S+ S+++ CA ++ L+ G +V A +     D D
Sbjct: 308 YEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMD 367

Query: 404 QIISTSLVDFYCKCG---------------------------------YDALALFNEMRN 430
               ++L+  Y KCG                                   AL +F++MR 
Sbjct: 368 VFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRL 427

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
            G+ P  IT+   L+AC + G VKEG++ F++M     I P  EHYSCMVDL  R+G + 
Sbjct: 428 AGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           EA +LI+ MP E D  +W +++  C  H +  +    A++++EL+P NA  Y+ LS I+ 
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYT 547

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           + G WE +S +R  +  +++ K PGCSW +
Sbjct: 548 SVGRWEDASKMRKFISSRNLNKSPGCSWIE 577



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 33/273 (12%)

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N  I   +  G IE A+  F  MP ++  S+N+++ G  +N  P  AL LF  M   DL 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDL- 79

Query: 367 MDKFSLASVISACANISSLELGEQVF----ARVTIIGLDSDQIISTSLVDFYCKCGY--D 420
                     S  A IS L L  Q      A +  I      +  TSL+  Y + G   D
Sbjct: 80  ---------ASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLAD 130

Query: 421 ALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
           A+ LF +M  RN       +++T +L      G V E ++ FD M      D ++  ++ 
Sbjct: 131 AIRLFQQMPERNH------VSYTVLLGGLLDAGRVNEARRLFDEMP-----DRDVVAWTA 179

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
           M+  + +AG + EA  L ++MP + +V  W++++ G   +G+  L RK+ E M E    N
Sbjct: 180 MLSGYCQAGRITEARALFDEMP-KRNVVSWTAMISGYAQNGEVNLARKLFEVMPE---RN 235

Query: 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
             ++  +   +  +G  E ++ + + M E  V 
Sbjct: 236 EVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA 268


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 179/599 (29%), Positives = 280/599 (46%), Gaps = 104/599 (17%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+ +G+Q+H   LK G L+  L ++N L+ MY +      A  +FD M  R+  SWN++I
Sbjct: 330 SLALGQQVHCMALKLG-LDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVI 388

Query: 80  EGFMKLGHKEKS----LQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH-ILVN 134
            G  + G + ++    +QL     + + ++   ++   A +    L   KQ+H H I +N
Sbjct: 389 AGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKA-ASSLPEGLSLSKQVHVHAIKIN 447

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
            +                                 D F  +ALI  Y+    M +A  +F
Sbjct: 448 NVS--------------------------------DSFVSTALIDAYSRNRCMKEAEILF 475

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           +R  +   V WN+M++GY  +++  + L LF  M + G   D  TLA+V   C  L  + 
Sbjct: 476 ERH-NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAIN 534

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            GKQVH +A K G   D+ V+S +LD Y K G  S A   F  + V D +   TMI+   
Sbjct: 535 QGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMIS--- 591

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
                                       G  +NG    A  +F  M  + +  D+F++A+
Sbjct: 592 ----------------------------GCIENGEEERAFHVFSQMRLMGVLPDEFTIAT 623

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------- 417
           +  A + +++LE G Q+ A    +   +D  + TSLVD Y KC                 
Sbjct: 624 LAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN 683

Query: 418 ----------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                           G + L LF +M++ G+KP  +TF  +LSAC H GLV E  K   
Sbjct: 684 ITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMR 743

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
           +M   Y I PEIEHYSC+ D   RAG + +A NLIE M  EA   M+ ++L  C   GD 
Sbjct: 744 SMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDT 803

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             G++VA +++EL+P ++ AY+ LS+++A + +W++  L R +M+   V K PG SW +
Sbjct: 804 ETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 862



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 197/450 (43%), Gaps = 86/450 (19%)

Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
           + GKC    +  ++L   + P+ F ++ LIS Y+ CG +  ARRVFD+  D   V WNS+
Sbjct: 56  MLGKC----THARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSI 111

Query: 209 ISGYISNNE-----DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
           ++ Y  ++E       +A LLF  +R++ V     TL+ +L  C   G++   +  HG+A
Sbjct: 112 LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA 171

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
           CK+G+  D  VA AL++ Y K G   +   LF E+   D +L N M+  Y   G  E+A 
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 231

Query: 324 HIFRTM------PN--------------------KSLISWN-----SMIV----GLSQ-- 346
            +          PN                    KS  + N     S I+    GLS+  
Sbjct: 232 DLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYL 291

Query: 347 -NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
            +G     L  F +M + D+  D+ +   +++    + SL LG+QV      +GLD    
Sbjct: 292 HSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLT 351

Query: 406 ISTSLVDFYCKC---GY------------------------------DALALFNEMRNTG 432
           +S SL++ YCK    G+                              +A+ LF ++   G
Sbjct: 352 VSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG 411

Query: 433 VKPTIITFTAILSACDHC--GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           +KP   T T++L A      GL    Q    A+K     D  +   + ++D ++R  C+ 
Sbjct: 412 LKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVS--TALIDAYSRNRCMK 469

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
           EA  L E+  F  D+  W++++ G     D
Sbjct: 470 EAEILFERHNF--DLVAWNAMMAGYTQSHD 497



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 136/600 (22%), Positives = 245/600 (40%), Gaps = 114/600 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            L++  T   + +GK  H   L     N    + N L+ MY +CG+ T A  +FD+MP R
Sbjct: 45  FLRNAITSSDLMLGKCTHARILTFE-ENPERFLINNLISMYSKCGSLTYARRVFDKMPDR 103

Query: 71  NCFSWNAMIEGFMK-----LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEY 123
           +  SWN+++  + +     + + +++  LF ++ Q   ++  M +S   K  L +  +  
Sbjct: 104 DLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWA 163

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            +  H +    GLD D  +  +LVN+Y K G       +   M   D    + ++  Y  
Sbjct: 164 SESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLE 223

Query: 184 CGKMNDA----------------------------------RRVFDRTTDTSSV----MW 205
            G   +A                                   + F    D SSV      
Sbjct: 224 MGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFR 283

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
           N  +S Y+ + + +  L  F  M  + V  D  T   +L+    +  L  G+QVH  A K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
           +G +D ++  S                              N++I +Y    +   A+ +
Sbjct: 344 LG-LDLMLTVS------------------------------NSLINMYCKLRKFGFARTV 372

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI-SS 384
           F  M  + LISWNS+I G++QNG  +EA+ LF  + +  L+ D++++ SV+ A +++   
Sbjct: 373 FDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEG 432

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYC--KC------------------------- 417
           L L +QV      I   SD  +ST+L+D Y   +C                         
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNFDLVAWNAMMAGY 492

Query: 418 -----GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDP 471
                G+  L LF  M   G +    T   +   C     + +G++    A+K  Y +D 
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            +   S ++D++ + G ++ A    + +P   DV  W++++ GC+ +G++     V  +M
Sbjct: 553 WVS--SGILDMYVKCGDMSAAQFAFDSIPVPDDVA-WTTMISGCIENGEEERAFHVFSQM 609



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 149/325 (45%), Gaps = 42/325 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA + ++C    +I+ GKQ+H + +K G  +  L +++ +L MY++CG+ + A   FD +
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAIKSG-YDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 578

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYGK 125
           P  +  +W  MI G ++ G +E++  +F+ M           I+  AKA   L ALE G+
Sbjct: 579 PVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGR 638

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH++ L      D  +G+SLV++Y KCG  +            D +CL           
Sbjct: 639 QIHANALKLNCTNDPFVGTSLVDMYAKCGSID------------DAYCL----------- 675

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                   F R    +   WN+M+ G   + E  E L LF +M+  G+  D  T   VLS
Sbjct: 676 --------FKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLS 727

Query: 246 ACSSLGFL----EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           ACS  G +    +H + +HG     G+  ++   S L D   + G+   A  L   + + 
Sbjct: 728 ACSHSGLVSEAYKHMRSMHG---DYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSME 784

Query: 302 DTI-LLNTMITVYSSCGRIEDAKHI 325
            +  +  T++      G  E  K +
Sbjct: 785 ASASMYRTLLAACRVQGDTETGKRV 809


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 180/609 (29%), Positives = 291/609 (47%), Gaps = 100/609 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC-GNPTDALLLFDEMPR 69
           + ++C+   +I +GK +    LK G   S + +   L+ M+++  G+   A  +FD MP 
Sbjct: 48  VFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPD 107

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQI 127
           RN  +W  MI  F +LG    ++ LF  M           +SG   A A++  L  G+Q 
Sbjct: 108 RNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQF 167

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKC---GDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           H  ++ +GLD D  +G SLV++Y KC   G  + A +V + M   +    +A+I+GY   
Sbjct: 168 HCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQS 227

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G                                D EA+ LF +M +  V  +  T +SVL
Sbjct: 228 GGC------------------------------DREAIELFLEMVQGQVKPNHFTFSSVL 257

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            AC++L  +  G+QV+    K+ +     V ++L+  YS+ G   +A K F  L   + +
Sbjct: 258 KACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLV 317

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             NT++  Y+                 KSL S               EA +LF  +    
Sbjct: 318 SYNTIVNAYA-----------------KSLNSE--------------EAFELFNEIEGAG 346

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
             ++ F+ AS++S  ++I ++  GEQ+ +R+   G  S+  I  +L+  Y +CG      
Sbjct: 347 TGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAF 406

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                        AL  F++M   GV P  +T+ A+LSAC H G
Sbjct: 407 QVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVG 466

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           L+ EG K F +MK ++ I P +EHY+C+VDL  R+G L EA+ L+  MPF+AD  +  + 
Sbjct: 467 LISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTF 526

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  HG+  LG+  AE ++E DP +  AYI LS++ A++G+WE+ + IR  M+E+++ 
Sbjct: 527 LGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLT 586

Query: 572 KLPGCSWAD 580
           K  GCSW +
Sbjct: 587 KEAGCSWIE 595



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 159/407 (39%), Gaps = 111/407 (27%)

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V W+++IS Y +N +  EA+  F  M   G   +      V  ACS+   +  GK + G 
Sbjct: 8   VSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGF 67

Query: 263 ACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
             K G  + DV V  AL+D + K                                G +E 
Sbjct: 68  LLKTGYFESDVCVGCALIDMFVKGN------------------------------GDLES 97

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A  +F  MP++++++W  MI    Q G   +A+DLF +M       D+F+L+ V+SACA 
Sbjct: 98  AYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAE 157

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------------------ 417
           +  L LG Q    V   GLD D  +  SLVD Y KC                        
Sbjct: 158 MGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSW 217

Query: 418 -----GY--------DALALFNEMRNTGVKPTIITFTAILSAC----------------- 447
                GY        +A+ LF EM    VKP   TF+++L AC                 
Sbjct: 218 TAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVV 277

Query: 448 ------------------DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
                               CG ++  +K FD +      +  +  Y+ +V+ +A++   
Sbjct: 278 KMRLASINCVGNSLISMYSRCGNMENARKAFDVL-----FEKNLVSYNTIVNAYAKSLNS 332

Query: 490 NEAVNL---IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
            EA  L   IE      +   ++S+L G  + G  G G ++  R+++
Sbjct: 333 EEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILK 379



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL   ++  +I  G+Q+H   LK G   S L I N L+ MY RCGN   A  +F+EM
Sbjct: 354 FASLLSGASSIGAIGKGEQIHSRILKSG-FKSNLHICNALISMYSRCGNIEAAFQVFNEM 412

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
              N  SW +MI GF K G   ++L+ F+ M +     N+ ++  ++S  +   L + E 
Sbjct: 413 GDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLIS-EG 471

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
            K   S  + +G+       + +V+L G+ G    A +++N M    D
Sbjct: 472 LKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKAD 519



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 43/245 (17%)

Query: 329 MPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
           M NK  L+SW+++I   + N    EA+  F +M +     +++    V  AC+N  ++ L
Sbjct: 1   MGNKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISL 60

Query: 388 GEQVFARVTIIG-LDSDQIISTSLVDFYCK------------------------------ 416
           G+ +F  +   G  +SD  +  +L+D + K                              
Sbjct: 61  GKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRF 120

Query: 417 --CGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
              G+  DA+ LF +M  +G  P   T + ++SAC   GL+  G++ F  +  +  +D +
Sbjct: 121 QQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLD 179

Query: 473 IEHYSCMVDLFARA---GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           +     +VD++A+    G +++A  + ++MP   +V  W++I+ G V  G  G  R+  E
Sbjct: 180 VCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAIITGYVQSG--GCDREAIE 236

Query: 530 RMIEL 534
             +E+
Sbjct: 237 LFLEM 241


>gi|449453101|ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
 gi|449521874|ref|XP_004167954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
          Length = 697

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 169/567 (29%), Positives = 288/567 (50%), Gaps = 78/567 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L+SC +  ++H  +Q+H H +K G + + + + + L+ +Y +C    DA  +FDE+
Sbjct: 163 LASILRSCGSVLALHFSRQIHGHIVKCGFVGNVI-LESSLVDVYGKCRLMNDARSMFDEI 221

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAAL 121
             RN  SWN ++  ++++G+ ++++ +F      ++MP    FS N LI   A + +AAL
Sbjct: 222 QNRNDVSWNVIVRRYLEVGNGKEAVSMFFQMFRESLMPSSFTFS-NALI---ACSRMAAL 277

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             G QIH  ++  GL+ + V+ SSL+++Y KCG   +A+QV       +    ++++  Y
Sbjct: 278 IEGGQIHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQPSSRNLISWTSMVYAY 337

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           A  G +  AR +F+   + + + WN+M++GYI +++  EAL   H MR +    D +TL 
Sbjct: 338 ATSGDVLKARELFNEMPERNVISWNAMLAGYIHSSQWEEALEFVHLMRSSIKDIDRTTLC 397

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            +L+ C+    +E GKQVHG   + G   ++ + +ALLD Y K                 
Sbjct: 398 LILNVCTGSSDVERGKQVHGFVYRTGFYANLYIGNALLDMYGK----------------- 440

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                         CG ++ AK  F  M   +  +SWN+++   +++G   +A+ +F  M
Sbjct: 441 --------------CGNLKSAKVWFYQMSQWRDKVSWNALLTAHARHGMSEQAMTIFSEM 486

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
            +L+   + F+ A+++ ACAN+ +LE G+Q+   +       D +++ +LVD YCKC   
Sbjct: 487 -QLETDPNNFTFATLLGACANMFALEHGKQIHGFMVRNNYAIDIVLTGALVDMYCKCREL 545

Query: 418 ------------------------------GYDALALFNEMR-NTGVKPTIITFTAILSA 446
                                            A+ LF  M    G+KP  +TF  IL A
Sbjct: 546 KYALKVFEHVASRDVVLWNSIILGCCHNRRDMLAIKLFQLMTMEEGIKPDHVTFQGILLA 605

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H  LV+ G+K+FD+M  ++ + P +EHY CMV+L+ + G ++E    I  MPF+  V 
Sbjct: 606 CLHENLVELGRKYFDSMSEKFCVIPRLEHYECMVELYGQHGNMDELEKFINNMPFDPTVP 665

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIE 533
           M   I   C  HG   L   VA R+ E
Sbjct: 666 MLERIFNACREHGHSRLAEWVAIRLNE 692



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 148/546 (27%), Positives = 261/546 (47%), Gaps = 77/546 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDE 66
            RL Q C++  ++   +++  H         T PI   NR ++ Y +CG   DA  LFDE
Sbjct: 63  TRLFQLCSSTRALVEARKVESHL---ATFCPTPPIFLLNRAIEAYGKCGCLKDARELFDE 119

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYG 124
           MP+R+  SWNAMI  + + G+  ++L L+  + +   ++  + ++   ++   + AL + 
Sbjct: 120 MPQRDGGSWNAMITAYTQNGYALEALNLYLDLNKSGVYATEVTLASILRSCGSVLALHFS 179

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +QIH HI+  G   + +L SSLV++YGK                               C
Sbjct: 180 RQIHGHIVKCGFVGNVILESSLVDVYGK-------------------------------C 208

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             MNDAR +FD   + + V WN ++  Y+      EA+ +F +M R  ++  + T ++ L
Sbjct: 209 RLMNDARSMFDEIQNRNDVSWNVIVRRYLEVGNGKEAVSMFFQMFRESLMPSSFTFSNAL 268

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            ACS +  L  G Q+HG   KVG+ ++ +++S+L+D Y K G  ++A ++F++    + I
Sbjct: 269 IACSRMAALIEGGQIHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQPSSRNLI 328

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
              +M+  Y++ G +  A+ +F  MP +++ISWN+M+ G   +    EAL+    M    
Sbjct: 329 SWTSMVYAYATSGDVLKARELFNEMPERNVISWNAMLAGYIHSSQWEEALEFVHLMRSSI 388

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
             +D+ +L  +++ C   S +E G+QV   V   G  ++  I  +L+D Y KCG      
Sbjct: 389 KDIDRTTLCLILNVCTGSSDVERGKQVHGFVYRTGFYANLYIGNALLDMYGKCGNLKSAK 448

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         A+ +F+EM+     P   TF  +L AC + 
Sbjct: 449 VWFYQMSQWRDKVSWNALLTAHARHGMSEQAMTIFSEMQ-LETDPNNFTFATLLGACANM 507

Query: 451 GLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
             ++ G++    M +  Y ID  I     +VD++ +   L  A+ + E +    DV +W+
Sbjct: 508 FALEHGKQIHGFMVRNNYAID--IVLTGALVDMYCKCRELKYALKVFEHVA-SRDVVLWN 564

Query: 510 SILRGC 515
           SI+ GC
Sbjct: 565 SIILGC 570


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 168/614 (27%), Positives = 296/614 (48%), Gaps = 105/614 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGIL--NSTLPIANRLLQMYMRCGNPTDALLLFD 65
           +  LL+   T  S+  GK +H   + +     +S +   N L+ +Y +CG    A  LFD
Sbjct: 26  VVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFD 85

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAKADLAA 120
            M +RN  SW+A++ G++  G   + L LF  +        N++ + +++S    AD   
Sbjct: 86  RMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLS--CCADSGR 143

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           ++ GKQ H ++L +GL     + ++L+++Y +C   +SA Q+L+ +   D F  ++++S 
Sbjct: 144 VKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSA 203

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
               G   +A +V  R  D   V+W+S+                              T 
Sbjct: 204 LVESGCRGEAAQVLKRMVD-ECVIWDSV------------------------------TY 232

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SVL  C+ +  L+ G Q+H    K G++ DV V+S L+DT                   
Sbjct: 233 VSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDT------------------- 273

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                       Y  CG + +A+  F  + ++++++W +++    QNG   E L+LF  M
Sbjct: 274 ------------YGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKM 321

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK---- 416
              D R ++F+ A +++ACA++ +L  G+ +  R+ + G  +  I+  +L++ Y K    
Sbjct: 322 ELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNI 381

Query: 417 ----------------------CGY-------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                 CGY        AL +F +M + G  P  +TF  +LSAC
Sbjct: 382 DSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSAC 441

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVG 506
            H  LV+EG  +FD +  ++ ++P +EHY+CMV L  RAG L+EA N ++     + DV 
Sbjct: 442 VHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVV 501

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            W ++L  C  H +  LG+++ E +I++DP +   Y  LS++ A + +W+    IR +M+
Sbjct: 502 AWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMK 561

Query: 567 EKHVGKLPGCSWAD 580
           E+++ K PG SW D
Sbjct: 562 ERNIKKEPGASWLD 575


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 177/615 (28%), Positives = 297/615 (48%), Gaps = 107/615 (17%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFD 65
           +L  LL +     S+    Q+H   +      ++LP + N L+ +Y +CG    ALLLF 
Sbjct: 144 HLNHLLNTAIQTRSLKHATQIHTQIIINNY--TSLPFLFNNLINLYAKCGCLNQALLLFS 201

Query: 66  EMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA 119
                 +   +W ++I          ++L LFN M    P  N F+++ ++S  A A   
Sbjct: 202 ITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILS--ASAATM 259

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            + +G+Q+HS I  +G D +  +G++LV++Y K                           
Sbjct: 260 MVLHGQQLHSLIHKHGFDANIFVGTALVDMYAK--------------------------- 292

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-MRRNGVLEDAS 238
               C  M+ A RVFD+  + + V WNSMI G+  NN    A+ +F   +R   V+ +  
Sbjct: 293 ----CADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEV 348

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           +++SVLSAC+++G L  G+QVHG   K G++    V ++L+D Y K       C+ F E 
Sbjct: 349 SVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFK-------CRFFDE- 400

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                                     +F+ + ++ +++WN +++G  QN    EA + F 
Sbjct: 401 -----------------------GVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFW 437

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M +  +  D+ S ++V+ + A++++L  G  +  ++  +G   +  I  SL+  Y KCG
Sbjct: 438 VMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCG 497

Query: 419 --YDA-------------------------------LALFNEMRNTGVKPTIITFTAILS 445
              DA                               + LF  M + G++P+ +TF  +LS
Sbjct: 498 SLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLS 557

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H G V+EG   F++MK  + ++P  EHY+CMVDL  RAG L+EA   IE MP +   
Sbjct: 558 ACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTP 617

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +W ++L  C  +G+  +GR+ AER+ E++P N   Y+ L+++   SG  E+++ +R +M
Sbjct: 618 SVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLM 677

Query: 566 REKHVGKLPGCSWAD 580
               V K PGCSW D
Sbjct: 678 GVNGVRKEPGCSWID 692


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 166/570 (29%), Positives = 278/570 (48%), Gaps = 63/570 (11%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R GN   A   F+ MP R   S+NA++ G+ +    + +L LF  MP ++  S+N LISG
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISG 88

Query: 113 F---------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
                     A A LA++ +   + S              +SL+  Y + G    A ++ 
Sbjct: 89  LSLRRQTLPDAAAALASIPFPPSVVSF-------------TSLLRGYVRHGLLADAIRLF 135

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
             M E +    + L+ G  + G++N+ARR+FD   D   V W +M+SGY      TEA  
Sbjct: 136 QQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARA 195

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           LF +M +  V+    +  +++S  +  G +   +++     +V    + +  +A+L  Y 
Sbjct: 196 LFDEMPKRNVV----SWTAMISGYAQNGEVNLARKLF----EVMPERNEVSWTAMLVGYI 247

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           + G   DA +LF+ +  +     N M+  +   G ++ AK +F  M  +   +W++MI  
Sbjct: 248 QAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKA 307

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
             QN   +EAL  F  M    +R +  S+ S+++ CA ++ L+ G +V A +     D D
Sbjct: 308 YEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMD 367

Query: 404 QIISTSLVDFYCKCG---------------------------------YDALALFNEMRN 430
               ++L+  Y KCG                                   AL +F++MR 
Sbjct: 368 VFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRL 427

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
            G+ P  IT+   L+AC + G VKEG++ F++M     I P  EHYSCMVDL  R+G + 
Sbjct: 428 AGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           EA +LI+ MP E D  +W +++  C  H +  +    A++++EL+P NA  Y+ LS I+ 
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYT 547

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           + G WE +S +R  +  +++ K PGCSW +
Sbjct: 548 SVGRWEDASKMRKFISSRNLNKSPGCSWIE 577



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 33/273 (12%)

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N  I   +  G IE A+  F  MP ++  S+N+++ G  +N  P  AL LF  M   DL 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDL- 79

Query: 367 MDKFSLASVISACANISSLELGEQVF----ARVTIIGLDSDQIISTSLVDFYCKCGY--D 420
                     S  A IS L L  Q      A +  I      +  TSL+  Y + G   D
Sbjct: 80  ---------ASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLAD 130

Query: 421 ALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
           A+ LF +M  RN       +++T +L      G V E ++ FD M      D ++  ++ 
Sbjct: 131 AIRLFQQMPERNH------VSYTVLLGGLLDAGRVNEARRLFDEMP-----DRDVVAWTA 179

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
           M+  + +AG + EA  L ++MP + +V  W++++ G   +G+  L RK+ E M E    N
Sbjct: 180 MLSGYCQAGRITEARALFDEMP-KRNVVSWTAMISGYAQNGEVNLARKLFEVMPE---RN 235

Query: 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
             ++  +   +  +G  E ++ + + M E  V 
Sbjct: 236 EVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA 268


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 181/614 (29%), Positives = 296/614 (48%), Gaps = 103/614 (16%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH   +K G L++ + + N LL  Y + G    A  +F EM  ++  ++NAM+ G  K G
Sbjct: 157 LHPFAIKFG-LDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG 215

Query: 87  HKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVL 142
              ++LQLF  M +       F+++ +++    A +A L  G Q+H+ +L +    +  +
Sbjct: 216 LHTQALQLFAAMRRAGIPATHFTFSSILT--VAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
            +SL++ Y KC                             +C  ++D RR+FD   +  +
Sbjct: 274 NNSLLDFYSKC-----------------------------DC--LDDMRRLFDEMPERDN 302

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V +N +I+ Y  N      L LF +M++ G        A++LS   SL  +  GKQ+H  
Sbjct: 303 VSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQ 362

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
              +G+  + ++ +AL+D                               +YS CG ++ A
Sbjct: 363 LVLLGLASEDLLGNALID-------------------------------MYSKCGMLDAA 391

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
           K  F     KS ISW ++I G  QNG   EAL LF +M +  LR D+ + +S+I A +++
Sbjct: 392 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSL 451

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM--RNT------- 431
           + + LG Q+ + +   G  S     + LVD Y KCG   +AL  F+EM  RN+       
Sbjct: 452 AMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVI 511

Query: 432 ----------------------GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                                 G  P  +TF ++L+AC H GL  E  K+F  MK QY I
Sbjct: 512 SAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSI 571

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P  EHY+C++D   R GC ++   ++ +MPF+AD  +W+SIL  C  HG++ L R  A+
Sbjct: 572 SPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAAD 631

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFL 589
           ++  ++P +A  Y+ LS+I+A +G+WE ++ ++ IMR++ V K  G SW + I    +  
Sbjct: 632 KLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVE-IKQKIYSF 690

Query: 590 DTMFLQLANFDEIK 603
            +  L     DEIK
Sbjct: 691 ASNDLTSPMIDEIK 704



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 227/519 (43%), Gaps = 69/519 (13%)

Query: 48  LQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN 107
           L+  +  G+   A  +FD+MP +N FS N ++  +   G    +  LF   P +N  +W 
Sbjct: 50  LRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWT 109

Query: 108 MLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
           +++   A A   +      +   +L  G+  D V  ++++NL G C   +     +    
Sbjct: 110 IMMRAHAAAGRTS--DALSLFRAMLGEGVIPDRVTVTTVLNLPG-CTVPSLHPFAIKFGL 166

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           +   F  + L+  Y   G +  ARRVF    D  +V +N+M+ G       T+AL LF  
Sbjct: 167 DTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAA 226

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           MRR G+     T +S+L+  + +  L  G QVH    +   + +V V ++LLD YSK   
Sbjct: 227 MRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDC 286

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             D  +LF E                               MP +  +S+N +I   + N
Sbjct: 287 LDDMRRLFDE-------------------------------MPERDNVSYNVIIAAYAWN 315

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
                 L LF  M KL         A+++S   ++  + +G+Q+ A++ ++GL S+ ++ 
Sbjct: 316 QCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG 375

Query: 408 TSLVDFYCKCGY---------------------------------DALALFNEMRNTGVK 434
            +L+D Y KCG                                  +AL LF++MR  G++
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 435

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P   TF++I+ A     ++  G++    +  +      +   S +VD++A+ GCL+EA+ 
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQLHSYL-IRSGYKSSVFSGSVLVDMYAKCGCLDEALR 494

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
             ++MP E +   W++++     +G+     K+ E M+ 
Sbjct: 495 TFDEMP-ERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 163/348 (46%), Gaps = 24/348 (6%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D ++   A +L    +   +H+GKQ+H   +  G+ +  L + N L+ MY +CG    A 
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDL-LGNALIDMYSKCGMLDAAK 392

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAK 115
             F     ++  SW A+I G+++ G  E++LQLF+ M      P +  FS   +I   A 
Sbjct: 393 SNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFS--SIIK--AS 448

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           + LA +  G+Q+HS+++ +G       GS LV++Y KCG  + A +  + M E +    +
Sbjct: 449 SSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWN 508

Query: 176 ALISGYANCGKMNDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
           A+IS YA+ G+  +A ++F+       +  SV + S+++    N    E +  FH M+  
Sbjct: 509 AVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQ 568

Query: 232 GVLED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS- 289
             +       A V+     +G      QV     ++    D I+ +++L +    G    
Sbjct: 569 YSISPWKEHYACVIDTLGRVGCFS---QVQKMLVEMPFKADPIIWTSILHSCRIHGNQEL 625

Query: 290 ---DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
               A KLF  ++  D      +  +Y+  G+ EDA  + + M ++ +
Sbjct: 626 ARVAADKLFG-MEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGV 672


>gi|255547019|ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 515

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 168/528 (31%), Positives = 253/528 (47%), Gaps = 99/528 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C    +    K+LH H +K  + N    + N L+  Y + GN   A  LFD MP+R
Sbjct: 14  LLKFCCETRNQSQAKKLHCHIIKT-LANPEPFLYNNLMNAYGKLGNIAYARHLFDGMPQR 72

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------------- 115
           N FSWN ++  + K GH  K  ++F++MP ++  SWN ++SG+A                
Sbjct: 73  NSFSWNTILSAYSKSGHLPKMKEIFSLMPNRDGVSWNTILSGYASYGSVSDAVKAYNSMM 132

Query: 116 -------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
                              +    ++ G+QIH HI+  G      +GS LV++Y K G  
Sbjct: 133 RDGVFNLNRITFSTMLILASSRELVDLGRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLV 192

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
             A +V + M + +    + +I+G    G M D++R+F    +  ++ W +MI+G + N 
Sbjct: 193 YEAKKVFDEMPDRNVVMHNTMITGLLKFGMMEDSKRLFHGMKERDNISWTTMITGLVQNG 252

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
            + EA+  F +MR +G+  D  T  SVL+AC  L  L  GKQVH    +    D+V V S
Sbjct: 253 LEEEAIDFFRQMRLDGIGMDQYTFGSVLTACGGLTALREGKQVHAFIIRSDCTDNVFVGS 312

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           AL+D Y K       CK+                        +  A+ +F+ M  K+++S
Sbjct: 313 ALVDMYCK-------CKI------------------------LRYAEAVFKRMKYKNVVS 341

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           W +++VG  QNG   EA+ +FC+M +  +  D F+L SVIS+CAN++SLE G Q   R  
Sbjct: 342 WTAILVGYGQNGFSEEAVKVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCRAL 401

Query: 397 IIGLDSDQIISTSLVDFYCKCG--YDALALFNEM---------------------RNT-- 431
           + GL S   +S +LV  Y KCG   D+  LFNEM                     R T  
Sbjct: 402 VSGLISSITVSNALVTLYGKCGSIEDSDRLFNEMNFRDEVSWTALISGYAQFGKARETIE 461

Query: 432 --------GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                   G+KP  +TF  +L AC   GLV  GQ++FD+M  +Y I P
Sbjct: 462 LFERMLAHGLKPDAVTFIGVLLACSRAGLVARGQQFFDSMLEEYGIIP 509



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 135/491 (27%), Positives = 246/491 (50%), Gaps = 40/491 (8%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K++H HI+    + +  L ++L+N YGK G+   A  + + M + + F  + ++S Y+  
Sbjct: 28  KKLHCHIIKTLANPEPFLYNNLMNAYGKLGNIAYARHLFDGMPQRNSFSWNTILSAYSKS 87

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASV 243
           G +   + +F    +   V WN+++SGY S    ++A+  ++ M R+GV   +  T +++
Sbjct: 88  GHLPKMKEIFSLMPNRDGVSWNTILSGYASYGSVSDAVKAYNSMMRDGVFNLNRITFSTM 147

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L   SS   ++ G+Q+HGH  K G    V V S L+D Y+K G+  +A K+F E+   + 
Sbjct: 148 LILASSRELVDLGRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVYEAKKVFDEMPDRNV 207

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           ++ NTMIT     G +ED+K +F  M  +  ISW +MI GL QNG   EA+D F  M   
Sbjct: 208 VMHNTMITGLLKFGMMEDSKRLFHGMKERDNISWTTMITGLVQNGLEEEAIDFFRQMRLD 267

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
            + MD+++  SV++AC  +++L  G+QV A +       +  + ++LVD YCKC      
Sbjct: 268 GIGMDQYTFGSVLTACGGLTALREGKQVHAFIIRSDCTDNVFVGSALVDMYCKCKILRYA 327

Query: 418 --------------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                               GY       +A+ +F +M+  G++P   T  +++S+C + 
Sbjct: 328 EAVFKRMKYKNVVSWTAILVGYGQNGFSEEAVKVFCDMQRNGIEPDDFTLGSVISSCANL 387

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
             ++EG + F        +   I   + +V L+ + G + ++  L  +M F  +V  W++
Sbjct: 388 ASLEEGAQ-FHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLFNEMNFRDEVS-WTA 445

Query: 511 ILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           ++ G    G      ++ ERM+   L P+ A  +I +    + +G   +     D M E+
Sbjct: 446 LISGYAQFGKARETIELFERMLAHGLKPD-AVTFIGVLLACSRAGLVARGQQFFDSMLEE 504

Query: 569 HVGKLPGCSWA 579
           + G +P  +W+
Sbjct: 505 Y-GIIPVDNWS 514


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 175/591 (29%), Positives = 290/591 (49%), Gaps = 102/591 (17%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH   ++ G   S + +AN +L +Y +CG   DA  LF+ M  R+  SWN+++ G+ +LG
Sbjct: 168 LHACVIQYG-FGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLG 226

Query: 87  HKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVL 142
           +  + LQL   M     + +  ++  L+S  A A  + L  GK +H HIL  GL+ DS +
Sbjct: 227 NIREVLQLLIRMKTDGIEPDQQTFGSLVS--AAAMQSKLGVGKMVHGHILRAGLEQDSHI 284

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
            +SL+ +Y K                               CG +N A R+F+       
Sbjct: 285 ETSLIGMYLK-------------------------------CGNVNSAFRIFEGMMHKDV 313

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           + W +MISG + N+    A+ +F +M ++ V+   +T+ASVL+AC+ LG    G  VHG+
Sbjct: 314 ISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGY 373

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
                          +L    K  +PS                 N+++T+Y+ CG +E +
Sbjct: 374 ---------------ILRQRIKLDIPSQ----------------NSLVTMYAKCGHLEQS 402

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             +F  M  + ++SWN+++ G +QNG   +AL LF  M K   R D  ++ S++ ACA+I
Sbjct: 403 CSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASI 462

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD-------------- 420
            +L  G+ +   VT   L    +I T+LVD Y KCG        +D              
Sbjct: 463 GALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSII 522

Query: 421 -----------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                      AL ++++  +TG++P  + + +ILSAC H GLV +G  +F +M   + I
Sbjct: 523 AGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGI 582

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           +P +EH +C+VDL +RAG + EA +  ++M  +  + +   +L  C   G+  LG  VA 
Sbjct: 583 EPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAR 642

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            ++ L P NA  Y+QL+  +A+   W+    +   M+  H+ KLPG S+ +
Sbjct: 643 EIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIE 693



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/542 (25%), Positives = 225/542 (41%), Gaps = 99/542 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+++C +      G   H   +  G  + +  IA  L+  Y + G+   A  +FD M  R
Sbjct: 54  LVKACTSLDLFSHGLSFHQRVIVDGYSSDSY-IATSLINFYSKFGHNQSARKVFDTMDDR 112

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N   W  MI  + + G  + +  ++N+M ++     ++ + G     L  L + + +H+ 
Sbjct: 113 NVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVL-ELVHLQCLHAC 171

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           ++  G   D  L +S++N+Y KCG    A  +  +M   D    ++L+SGYA  G +   
Sbjct: 172 VIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIR-- 229

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                        E L L  +M+ +G+  D  T  S++SA +  
Sbjct: 230 -----------------------------EVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQ 260

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L  GK VHGH  + G+  D  + ++L+  Y K                          
Sbjct: 261 SKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLK-------------------------- 294

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                CG +  A  IF  M +K +ISW +MI GL QN     A+ +F  M K  +     
Sbjct: 295 -----CGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTA 349

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------- 419
           ++ASV++ACA + S  LG  V   +    +  D     SLV  Y KCG+           
Sbjct: 350 TIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRM 409

Query: 420 ----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                  AL LFNEMR    +P  IT  ++L AC   G + +G 
Sbjct: 410 SRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQG- 468

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           KW      +  + P I   + +VD++++ G L  A    ++MP + D+  WSSI+ G  +
Sbjct: 469 KWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGS 527

Query: 518 HG 519
           HG
Sbjct: 528 HG 529



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 157/340 (46%), Gaps = 43/340 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    S  +G  +H + L++ I    +P  N L+ MY +CG+   +  +FD M
Sbjct: 351 IASVLAACAELGSFPLGTSVHGYILRQRI-KLDIPSQNSLVTMYAKCGHLEQSCSVFDRM 409

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGK 125
            RR+  SWNA++ G  + GH  K+L LFN M +      ++ +     A A + AL  GK
Sbjct: 410 SRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGK 469

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH+ +  + L    ++ ++LV++Y KCGD  SA +  + M + D    S++I+GY + G
Sbjct: 470 WIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHG 529

Query: 186 KMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           K   A R++     T    + V++ S++S    N    + L  FH M ++  +E      
Sbjct: 530 KGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPR---- 585

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS--KRGMPS---------- 289
                      LEH       AC   ++D +  A  + + YS  KR  P           
Sbjct: 586 -----------LEH------RAC---IVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILL 625

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
           DAC+    +++ D +    +I   ++ G      H + +M
Sbjct: 626 DACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASM 665



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 152/388 (39%), Gaps = 81/388 (20%)

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           +N++I+   +     + LL +  M       DA T  S++ AC+SL    HG   H    
Sbjct: 16  YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
             G   D  +A++L++ YSK G    A K+F                             
Sbjct: 76  VDGYSSDSYIATSLINFYSKFGHNQSARKVFD---------------------------- 107

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
              TM +++++ W +MI   ++ G    A  ++  M +  ++    ++  ++S    +  
Sbjct: 108 ---TMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVH 164

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFN---------------- 426
           L+    + A V   G  SD  ++ S+++ YCKCG   DA ALF                 
Sbjct: 165 LQC---LHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSG 221

Query: 427 ---------------EMRNTGVKPTIITFTAILSACD-----HCGLVKEGQKWFDAMKWQ 466
                           M+  G++P   TF +++SA         G +  G      ++  
Sbjct: 222 YAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQD 281

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
            HI+      + ++ ++ + G +N A  + E M    DV  W++++ G V +    +   
Sbjct: 282 SHIE------TSLIGMYLKCGNVNSAFRIFEGM-MHKDVISWTAMISGLVQNDCADMAVT 334

Query: 527 VAERMIELDPENACAYIQLSSIFATSGE 554
           V  RM++     + A I  +S+ A   E
Sbjct: 335 VFRRMLKSRVMPSTATI--ASVLAACAE 360



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 41/237 (17%)

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
           N +  S+N++I  LS  G+  + L  + +M   D   D  +  S++ AC ++     G  
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCGYD------------------------------ 420
              RV + G  SD  I+TSL++FY K G++                              
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129

Query: 421 ---ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
              A +++N MR  G++P+ +T   +LS      L     +   A   QY    ++   +
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLSGV----LELVHLQCLHACVIQYGFGSDVALAN 185

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
            M++++ + G + +A  L E M    DV  W+S++ G    G+    R+V + +I +
Sbjct: 186 SMLNVYCKCGRVEDAQALFELMDAR-DVISWNSLVSGYAQLGNI---REVLQLLIRM 238


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 167/528 (31%), Positives = 271/528 (51%), Gaps = 50/528 (9%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILV-NGLDFDSVLGSSLVN--L 149
           ++ N     N FSWNM I G+ +++         I++ +L  N L   S +  +     L
Sbjct: 109 KILNNAANLNVFSWNMAIRGYVESE-------NPINAVLLYRNMLRKGSAIPDNYTYPLL 161

Query: 150 YGKCGDFN---SANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
           +  C  F+   +AN++L  + +     D F  +A+I    +CG++  AR++FD +     
Sbjct: 162 FKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDL 221

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V WNS+I+GY+      EA  L++KM    V+ D  T+  V+SA + L  L  G+++H  
Sbjct: 222 VSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQS 281

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
             ++G+   V +A+AL+D Y K      A  LF  +     +   TM+  Y+  G +E A
Sbjct: 282 IEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESA 341

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
             +F  MP K ++ WN++I G  Q     EAL LF  M    +  DK ++ + +SAC+ +
Sbjct: 342 VRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQL 401

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------ 418
            +L++G  +   V    L  +  + T+LVD Y KCG                        
Sbjct: 402 GALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAII 461

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                    + A++ F+EM + G+ P  ITF  +LSAC H GLV +G+ +F  M  +Y I
Sbjct: 462 CGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGI 521

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P+++HYSC+VDL  RAG L EA  LI  MPFE D  +W ++  G   HG+  +G + A 
Sbjct: 522 SPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAAS 581

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +++ELDP +   Y+ L++++  +  WE++  +R +M E+ V K PGCS
Sbjct: 582 KLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCS 629


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 180/615 (29%), Positives = 295/615 (47%), Gaps = 84/615 (13%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFDEMP 68
           LQ C+ H  +  GKQLH       IL S  P   +A++L+  Y +  +   A  +FD  P
Sbjct: 41  LQHCSDHRLLRQGKQLHARL----ILLSVTPDNFLASKLILFYSKSNHAHFARKVFDTTP 96

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF---------NVMPQKNDFSWNMLISGFAKADLA 119
            RN F+WNAM+ G+        +L LF         N  P  ++F+ + ++   A +   
Sbjct: 97  HRNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASP--DNFTISCVLKALASS-FC 153

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           + E  K++H  IL  GL                                 D F L+ALI+
Sbjct: 154 SPELAKEVHCLILRRGL-------------------------------YSDIFVLNALIT 182

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDAS 238
            Y  C ++  AR VFD  ++   V WN+MI GY       E   L+ +M   + V  +  
Sbjct: 183 CYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDECKRLYLEMLNVSAVAPNVV 242

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T  SV+ AC     L  G ++H    + G+  DV +++A++  Y+K G    A ++F  +
Sbjct: 243 TAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGM 302

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
           +  D +    +I+ Y   G ++DA  +FR + N  L  WN++I G+ QN       DL  
Sbjct: 303 REKDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVR 362

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY---- 414
            M    L  +  +LAS++ + +  S+L  G++V       G + +  +STS++D Y    
Sbjct: 363 QMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYAIRRGYEQNVYVSTSIIDAYGKLG 422

Query: 415 CKCG----YD-------------------------ALALFNEMRNTGVKPTIITFTAILS 445
           C CG    +D                         AL L+ +M + G++P  +T T++L+
Sbjct: 423 CICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSVLT 482

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV E    F++M  +Y I P +EHY+CMV + +RAG L+EAV  I +MP E   
Sbjct: 483 ACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVGVLSRAGKLSEAVQFISEMPIEPSA 542

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +W  +L G    GD  +G+   + + E++PEN   YI +++++A +G+WE++  +R+ M
Sbjct: 543 KVWGPLLHGASVFGDVEIGKFACDHLFEIEPENTGNYIIMANLYAHAGKWEQAGEVRERM 602

Query: 566 REKHVGKLPGCSWAD 580
           +   + K+ G SW +
Sbjct: 603 KVIGLQKIRGSSWIE 617



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 73/329 (22%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D +   S L  CS    L  GKQ+H     + V  D  +AS L+  YSK      A K  
Sbjct: 33  DFAAYGSALQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARK-- 90

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                                        +F T P+++  +WN+M++G S N     AL+
Sbjct: 91  -----------------------------VFDTTPHRNTFTWNAMLLGYSFNSMFRHALN 121

Query: 356 LFCNM---NKLDLRMDKFSLASVISACA-NISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           LF +       +   D F+++ V+ A A +  S EL ++V   +   GL SD  +  +L+
Sbjct: 122 LFGSFTFSTTPNASPDNFTISCVLKALASSFCSPELAKEVHCLILRRGLYSDIFVLNALI 181

Query: 412 DFYCKC--------------------------GYDALALFNEMRN--------TGVKPTI 437
             YC+C                          GY    L++E +         + V P +
Sbjct: 182 TCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDECKRLYLEMLNVSAVAPNV 241

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           +T  +++ AC     +  G +    +K +  I+ ++   + +V ++A+ G L+ A  + E
Sbjct: 242 VTAVSVMQACGQSMDLAFGMELHRFVK-ESGIEIDVSLSNAVVAMYAKCGRLDYAREMFE 300

Query: 498 QMPFEADVGMWSSILRGCVAHG--DKGLG 524
            M  E D   + +I+ G + +G  D  +G
Sbjct: 301 GMR-EKDEVTYGAIISGYMDYGLVDDAMG 328


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 181/614 (29%), Positives = 296/614 (48%), Gaps = 103/614 (16%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH   +K G L++ + + N LL  Y + G    A  +F EM  ++  ++NAM+ G  K G
Sbjct: 157 LHPFAIKFG-LDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEG 215

Query: 87  HKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVL 142
              ++LQLF  M +       F+++ +++    A +A L  G Q+H+ +L +    +  +
Sbjct: 216 LHTQALQLFAAMRRAGIPATHFTFSSILT--VAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
            +SL++ Y KC                             +C  ++D RR+FD   +  +
Sbjct: 274 NNSLLDFYSKC-----------------------------DC--LDDMRRLFDEMPERDN 302

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V +N +I+ Y  N      L LF +M++ G        A++LS   SL  +  GKQ+H  
Sbjct: 303 VSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQ 362

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
              +G+  + ++ +AL+D                               +YS CG ++ A
Sbjct: 363 LVLLGLASEDLLGNALID-------------------------------MYSKCGMLDAA 391

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
           K  F     KS ISW ++I G  QNG   EAL LF +M +  LR D+ + +S+I A +++
Sbjct: 392 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSL 451

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM--RNT------- 431
           + + LG Q+ + +   G  S     + LVD Y KCG   +AL  F+EM  RN+       
Sbjct: 452 AMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVI 511

Query: 432 ----------------------GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                                 G  P  +TF ++L+AC H GL  E  K+F  MK QY I
Sbjct: 512 SAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSI 571

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P  EHY+C++D   R GC ++   ++ +MPF+AD  +W+SIL  C  HG++ L R  A+
Sbjct: 572 SPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAAD 631

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFL 589
           ++  ++P +A  Y+ LS+I+A +G+WE ++ ++ IMR++ V K  G SW + I    +  
Sbjct: 632 KLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVE-IKQKIYSF 690

Query: 590 DTMFLQLANFDEIK 603
            +  L     DEIK
Sbjct: 691 ASNDLTSPMIDEIK 704



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 227/518 (43%), Gaps = 69/518 (13%)

Query: 48  LQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN 107
           L+  +  G+   A  +FD+MP +N FS N ++  +   G    +  LF   P +N  +W 
Sbjct: 50  LRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWT 109

Query: 108 MLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
           +++   A A   +      +   +L  G+  D V  ++++NL G C   +     +    
Sbjct: 110 IMMRAHAAAGRTS--DALSLFRAMLGEGVIPDRVTVTTVLNLPG-CTVPSLHPFAIKFGL 166

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           +   F  + L+  Y   G +  ARRVF    D  +V +N+M+ G       T+AL LF  
Sbjct: 167 DTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAA 226

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           MRR G+     T +S+L+  + +  L  G QVH    +   + +V V ++LLD YSK   
Sbjct: 227 MRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDC 286

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             D  +LF E+   D +  N +I  Y                      +WN     +   
Sbjct: 287 LDDMRRLFDEMPERDNVSYNVIIAAY----------------------AWNQCAATV--- 321

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
                 L LF  M KL         A+++S   ++  + +G+Q+ A++ ++GL S+ ++ 
Sbjct: 322 ------LRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG 375

Query: 408 TSLVDFYCKCGY---------------------------------DALALFNEMRNTGVK 434
            +L+D Y KCG                                  +AL LF++MR  G++
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 435

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P   TF++I+ A     ++  G++    +  +      +   S +VD++A+ GCL+EA+ 
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQLHSYL-IRSGYKSSVFSGSVLVDMYAKCGCLDEALR 494

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
             ++MP E +   W++++     +G+     K+ E M+
Sbjct: 495 TFDEMP-ERNSISWNAVISAYAHYGEAKNAIKMFEGML 531



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 163/348 (46%), Gaps = 24/348 (6%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D ++   A +L    +   +H+GKQ+H   +  G+ +  L + N L+ MY +CG    A 
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDL-LGNALIDMYSKCGMLDAAK 392

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAK 115
             F     ++  SW A+I G+++ G  E++LQLF+ M      P +  FS   +I   A 
Sbjct: 393 SNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFS--SIIK--AS 448

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           + LA +  G+Q+HS+++ +G       GS LV++Y KCG  + A +  + M E +    +
Sbjct: 449 SSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWN 508

Query: 176 ALISGYANCGKMNDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
           A+IS YA+ G+  +A ++F+       +  SV + S+++    N    E +  FH M+  
Sbjct: 509 AVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQ 568

Query: 232 GVLED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS- 289
             +       A V+     +G      QV     ++    D I+ +++L +    G    
Sbjct: 569 YSISPWKEHYACVIDTLGRVGCFS---QVQKMLVEMPFKADPIIWTSILHSCRIHGNQEL 625

Query: 290 ---DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
               A KLF  ++  D      +  +Y+  G+ EDA  + + M ++ +
Sbjct: 626 ARVAADKLFG-MEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGV 672


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 172/613 (28%), Positives = 295/613 (48%), Gaps = 106/613 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL  C+   ++ VG  +H   +K G+++  L + N L+ MY +CG  ++A +LF ++
Sbjct: 316 MVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHE-LMVCNALIDMYSKCGCLSEAAILFRKI 374

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS-------WNMLISGFAKADLAA 120
             ++  SWN+MI  + + G   ++  L   M  + +          N+L +   +++L +
Sbjct: 375 ENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLS 434

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L   + +H + L +   +  ++ +                               A I+ 
Sbjct: 435 L---RALHGYSLRHSFQYKELINN-------------------------------AFIAA 460

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA CG +  A  VF      S   WN++I G+  N +  +AL  + +M R G+L D  ++
Sbjct: 461 YAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSI 520

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            S+L AC  LG L++GK++HG   + G+  +  VA +LL                     
Sbjct: 521 VSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLL--------------------- 559

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                     ++Y  C +    +  F  M +K+ + WN+M+ G SQN  P EAL LF  M
Sbjct: 560 ----------SLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQM 609

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
               L  D+ ++AS++ AC+ +S+L LG++V        L  D  ++ SL+D Y K G+ 
Sbjct: 610 LSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFL 669

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                            A+ LF +M+ +  +P   TF  +L AC
Sbjct: 670 GHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQAC 729

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV EG  +   M+  Y ++PE+EHY+C++D+  RAG LNEA+N I +MP E D  +
Sbjct: 730 CHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKI 789

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           WSS+L   + + D  +G K AE+++ L+   A +YI LS+++AT+G+W+   ++R  M++
Sbjct: 790 WSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKD 849

Query: 568 KHVGKLPGCSWAD 580
             + K  GCSW +
Sbjct: 850 LSLQKDVGCSWIE 862



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 154/652 (23%), Positives = 277/652 (42%), Gaps = 159/652 (24%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R + +  LLQ C  + ++ +G++L          +    +  RL+ MY  CG P ++ L+
Sbjct: 106 RKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLV 165

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKS----LQLFNVMP-QKNDFSWNMLISG-FAKAD 117
           FD +  +N F WNA++ G+++    +++    L+L +V   Q ++F++  LI     K D
Sbjct: 166 FDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCD 225

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
              +  GK +H   +  GL  D  +G++++ LYGKCG  + A ++ + M E +      L
Sbjct: 226 ---IHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQN------L 276

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--NGVLE 235
           IS                         WNS+I G+  N    EA   F  +    +G++ 
Sbjct: 277 IS-------------------------WNSLIRGFSENGFWLEAYRAFRSLLESGDGLIP 311

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D +T+ ++L  CS  G ++ G  +HG A K+G++ +++V +AL+D YSK G  S+A  LF
Sbjct: 312 DVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILF 371

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-------------------------- 329
            +++    +  N+MI  YS  G + +   + R M                          
Sbjct: 372 RKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESE 431

Query: 330 ----------------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMN------------ 361
                             K LI+ N+ I   ++ GS + A  +F  MN            
Sbjct: 432 LLSLRALHGYSLRHSFQYKELIN-NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIG 490

Query: 362 -------------------KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
                              +L +  D FS+ S++ AC  +  L+ G+++   V   GL+ 
Sbjct: 491 GHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEM 550

Query: 403 DQIISTSLVDFYCKC--------------------------GY-------DALALFNEMR 429
           +  ++ SL+  Y  C                          GY       +AL+LF +M 
Sbjct: 551 NSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQML 610

Query: 430 NTGVKPTIITFTAILSACDH---CGLVKEGQKWFDAMKWQYHIDPEIEHYSC-MVDLFAR 485
           + G++P  I   +IL AC      GL KE   +  A+K     D  +   +C ++D++A+
Sbjct: 611 SDGLEPDEIAIASILGACSQLSALGLGKEVHCF--ALKNSLMEDNFV---ACSLMDMYAK 665

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
           +G L  +  +  ++  + +V  W+ ++ G   HG      ++ E M   D +
Sbjct: 666 SGFLGHSQRIFNRLNGK-EVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQ 716


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 176/596 (29%), Positives = 278/596 (46%), Gaps = 101/596 (16%)

Query: 19  HSIHVG--KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWN 76
           HS+H     Q+H   +  G++ S   +  + +      G    A  +FDE P  + F WN
Sbjct: 80  HSVHKRHLNQIHAQLVVSGLVESGF-LVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWN 138

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADLAALEYGKQIHSHILVN 134
           A+I G+        ++++++ M     N   + +     A + +  LE GK++H  I   
Sbjct: 139 AIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRL 198

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           G                                E D F  + L++ YA CG++  AR VF
Sbjct: 199 GF-------------------------------ESDVFVQNGLVALYAKCGRVEQARIVF 227

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           +   D + V W SMISGY  N    EAL +F +MR+  V  D   L SVL A + +  LE
Sbjct: 228 EGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLE 287

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            GK +HG   K+G+                                ++  LL ++  +Y+
Sbjct: 288 QGKSIHGCVVKMGL-------------------------------EFEPDLLISLTAMYA 316

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            CG++  A+  F  M   +++ WN+MI G ++NG   EA+ LF  M   ++R D  ++ S
Sbjct: 317 KCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRS 376

Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------- 417
            I ACA + SL+L + +   +      +D  ++T+L+D + KC                 
Sbjct: 377 AILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKD 436

Query: 418 ----------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                           G DA+ LF  M+  GV P  +TF  +L+AC+H GLV+EG + F 
Sbjct: 437 VVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFH 496

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
           +MK+ Y I+   +HY+C+VDL  R+G LNEA + I  MP E  V +W ++L  C  +   
Sbjct: 497 SMKY-YGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHV 555

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            LG   AE++  LDP N   Y+QLS+++A+S  W+  + +R +MREK + K  G S
Sbjct: 556 TLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYS 611



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 205/426 (48%), Gaps = 72/426 (16%)

Query: 130 HILVNGLDFDSVLGSSLVN-LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           +I  +G DFDS   S L + ++ +  +   A  V++ + E   F ++  ++   N G++ 
Sbjct: 62  YIPYSGFDFDSFFSSLLDHSVHKRHLNQIHAQLVVSGLVE-SGFLVTKFVNASWNIGEIG 120

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR+VFD   + S  +WN++I GY S+N   +A+ ++ +M+ +GV  D  TL  VL ACS
Sbjct: 121 YARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACS 180

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            +  LE GK+VHG   ++G   DV V                                N 
Sbjct: 181 GVPVLEVGKRVHGQIFRLGFESDVFVQ-------------------------------NG 209

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           ++ +Y+ CGR+E A+ +F  + +++++SW SMI G  QNG P+EAL +F  M + +++ D
Sbjct: 210 LVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPD 269

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------- 419
             +L SV+ A  ++  LE G+ +   V  +GL+ +  +  SL   Y KCG          
Sbjct: 270 WIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFD 329

Query: 420 ------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +A+ LF EM +  ++   IT  + + AC   G + +
Sbjct: 330 QMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSL-D 388

Query: 456 GQKWFDAM--KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
             KW      K +Y  D  +   + ++D+FA+ G ++ A  + ++   + DV +WS+++ 
Sbjct: 389 LAKWMGDYINKTEYRNDVFVN--TALIDMFAKCGSVDLAREVFDRT-LDKDVVVWSAMIV 445

Query: 514 GCVAHG 519
           G   HG
Sbjct: 446 GYGLHG 451



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/528 (24%), Positives = 237/528 (44%), Gaps = 89/528 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+    + VGK++H    + G   S + + N L+ +Y +CG    A ++F+ +  R
Sbjct: 175 VLKACSGVPVLEVGKRVHGQIFRLG-FESDVFVQNGLVALYAKCGRVEQARIVFEGLDDR 233

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYGKQIH 128
           N  SW +MI G+ + G   ++L++F  M Q+N    W  L+S   A  D+  LE GK IH
Sbjct: 234 NIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIH 293

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
             ++  GL+F+  L  SL  +Y KCG    A    + M+ P+    +A+ISGYA  G  N
Sbjct: 294 GCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTN 353

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                                          EA+ LF +M    +  D+ T+ S + AC+
Sbjct: 354 -------------------------------EAVGLFQEMISKNIRTDSITVRSAILACA 382

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            +G L+  K +  +  K    +DV V +AL+D ++K                        
Sbjct: 383 QVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAK------------------------ 418

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  CG ++ A+ +F    +K ++ W++MIVG   +G   +A+DLF  M +  +  +
Sbjct: 419 -------CGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPN 471

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEM 428
             +   +++AC +   +E G ++F  +   G+++       +VD   + G+   A ++ +
Sbjct: 472 DVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEA-YDFI 530

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG 487
               ++P +  + A+L AC     V  G+    A +  + +DP    HY  + +L+A + 
Sbjct: 531 TTMPIEPGVSVWGALLGACKIYRHVTLGEY---AAEQLFSLDPFNTGHYVQLSNLYASS- 586

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
                              +W S+ +  +   +KGL + +   +IE++
Sbjct: 587 ------------------RLWDSVAKVRILMREKGLSKDLGYSLIEIN 616



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 36/252 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  +L++      +  GK +H   +K G+     L I+  L  MY +CG    A   FD+
Sbjct: 273 LVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLIS--LTAMYAKCGQVMVARSFFDQ 330

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYG 124
           M   N   WNAMI G+ K G+  +++ LF  M  KN  + ++ +     A A + +L+  
Sbjct: 331 MEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLA 390

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K +  +I       D  + ++L++++ KCG  + A +V +   + D    SA+I GY   
Sbjct: 391 KWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLH 450

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G+  D                               A+ LF+ M++ GV  +  T   +L
Sbjct: 451 GRGQD-------------------------------AIDLFYAMKQAGVCPNDVTFVGLL 479

Query: 245 SACSSLGFLEHG 256
           +AC+  G +E G
Sbjct: 480 TACNHSGLVEEG 491


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 163/509 (32%), Positives = 251/509 (49%), Gaps = 75/509 (14%)

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
           F+ + ++   A+ ++  L  G+Q+H H+  NG   D  + ++LV+LY +CG         
Sbjct: 105 FTVSSVLKAAARREM--LREGEQVHVHVFKNGFQTDERIATTLVDLYARCG--------- 153

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
                                 +++DARRVFDR     + ++N+MI+ Y+   E   A  
Sbjct: 154 ----------------------RLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEE 191

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           LF  M       +  TL  ++   S+ G ++  K V   A   GV+ ++++ +A++  ++
Sbjct: 192 LFEVMPER----NTHTLMEMVGGYSARGDMDSAKHVFEMAN--GVV-NMVLCTAMISGFA 244

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITV-YSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
           K G   DA  +F  ++  D    N MI V Y+ CG +EDA+ +F  MP ++++ W SMI 
Sbjct: 245 KTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMIS 304

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G +Q G   +A+ LF +M    ++ D  ++A+V+S+C  + +L+LG  V A   + GL  
Sbjct: 305 GYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGK 364

Query: 403 DQIISTSLVDFYCKCG---------------------------------YDALALFNEMR 429
              +  SL+D Y KCG                                  +AL LF +M 
Sbjct: 365 GISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQME 424

Query: 430 NTG-VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488
             G V P  ITF  +L++C H GLV++G   F  M   Y I P IEHY CMVDL  RA  
Sbjct: 425 EEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKL 484

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
           L EA   IE+MP   DV +W S+L  C A G+ GL   VAER+ EL+P      + LS++
Sbjct: 485 LAEAEQFIEEMPIAPDVAIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNV 544

Query: 549 FATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +AT+  W   + +R  M    V K PGCS
Sbjct: 545 YATTSRWVDVNKVRTGMGRSRVSKRPGCS 573



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 136/317 (42%), Gaps = 57/317 (17%)

Query: 220 EALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
           +A+ L+ +M R   GV     T++SVL A +    L  G+QVH H  K G   D  +A+ 
Sbjct: 85  DAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATT 144

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           L+D Y++ G   DA ++F  L V D  L NTMI  Y   G +E A+ +F  MP ++  + 
Sbjct: 145 LVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTL 204

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
             M+ G S  G    A  +F   N +                                  
Sbjct: 205 MEMVGGYSARGDMDSAKHVFEMANGV---------------------------------- 230

Query: 398 IGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                + ++ T+++  + K G   DA ++F+ MR   V    +    + +    CGLV++
Sbjct: 231 ----VNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYA---KCGLVED 283

Query: 456 GQKWFDAMKWQYHIDPE--IEHYSCMVDLFARAGCLNEAVNLIEQMPF---EADVGMWSS 510
            +K FDAM       PE  +  ++ M+  + + G   +AV L   M     +AD    ++
Sbjct: 284 ARKVFDAM-------PERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIAT 336

Query: 511 ILRGCVAHGDKGLGRKV 527
           ++  C   G   LGR V
Sbjct: 337 VVSSCGQMGALDLGRYV 353


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 245/476 (51%), Gaps = 73/476 (15%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LI  Y  CG +  AR+VFD       V WNSMI+ YI N    EA+ ++ +M  +G+L D
Sbjct: 117 LIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPD 176

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLF 295
             T +SV  A S LG +  G++ HG +  +GV + +V V SAL+D Y+K G   DA  + 
Sbjct: 177 EFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVS 236

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----------------------- 332
            ++   D +L   +I  YS  G   ++  +FR M  K                       
Sbjct: 237 DQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLT 296

Query: 333 ---------------SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
                          S ++W S+IVGL QNG    AL  F  M +  +  + F+L+SV+ 
Sbjct: 297 SGRLIHGLIVKAGLESAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLR 356

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------- 418
           AC++++ LE G+Q+ A V   GLD D+ +  +L+DFY KCG                   
Sbjct: 357 ACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVS 416

Query: 419 --------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                         ++AL LF+ M++TG++P  +T+  +LSAC++ GL++EG   F + +
Sbjct: 417 VNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSAR 476

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
              +I+   +HY+CMVDL  RAG L EA  LI Q+   +DV +W ++L  C  HGD  + 
Sbjct: 477 NSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMA 535

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++V  R+I+L PE+   ++ LS+++A++G W K   ++  MRE  + K P  SW D
Sbjct: 536 KRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVD 591



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 225/496 (45%), Gaps = 90/496 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q C    SI    ++  H LK+G  +S   + N+L+  Y++CG+   A  +FDE+P R
Sbjct: 84  LIQQCIGIKSITDITKIQSHALKRGFHHS---LGNKLIDAYLKCGSVVYARKVFDEVPHR 140

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQ 126
           +  +WN+MI  +++ G  ++++ ++  M       ++F+++ +   F+  DL  +  G++
Sbjct: 141 HIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFS--DLGLVHEGQR 198

Query: 127 IHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            H   +V G+   +V +GS+LV++Y K G    A  V + +   D    +ALI GY++ G
Sbjct: 199 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHG 258

Query: 186 KMNDARRVFDRTTDT--------------------------------------SSVMWNS 207
           +  ++ +VF   T                                        S+V W S
Sbjct: 259 EDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVTWTS 318

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           +I G + N  +  ALL F +M R+ +  ++ TL+SVL ACSSL  LE GKQ+H    K G
Sbjct: 319 VIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFG 378

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
           +  D  V +AL+D Y K G    A  +F+ L   D + +N+MI  Y              
Sbjct: 379 LDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSY-------------- 424

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
                            +QNG   EAL LF  M    L  +  +   V+SAC N   LE 
Sbjct: 425 -----------------AQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEE 467

Query: 388 GEQVFARVTIIG---LDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTA 442
           G  +F+     G   L  D      +VD   + G   +A  L N++  + V    + +  
Sbjct: 468 GCHIFSSARNSGNIELTKDHY--ACMVDLLGRAGRLKEAEMLINQVNISDV----VIWRT 521

Query: 443 ILSACDHCGLVKEGQK 458
           +LSAC   G V+  ++
Sbjct: 522 LLSACRIHGDVEMAKR 537



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 8/197 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C++   +  GKQ+H   +K G L+    +   L+  Y +CG+   A  +F+ +
Sbjct: 351 LSSVLRACSSLAMLEQGKQIHAIVMKFG-LDIDKYVGAALIDFYGKCGSTEIARSVFNGL 409

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
              +  S N+MI  + + G   ++LQLF+ M     + N+ +W  ++S    A L  LE 
Sbjct: 410 LEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGL--LEE 467

Query: 124 GKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           G  I S    +G ++      + +V+L G+ G    A  ++N +   D      L+S   
Sbjct: 468 GCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACR 527

Query: 183 NCGKMNDARRVFDRTTD 199
             G +  A+RV +R  D
Sbjct: 528 IHGDVEMAKRVMNRVID 544


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 172/607 (28%), Positives = 291/607 (47%), Gaps = 102/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C     +  G+++H   ++ G  +  +  AN L+ MY + G+   A ++F ++P  
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVIRTG-YDKDVFTANALVDMYSKLGDIRMAAVVFGKVPET 266

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWNA I G +  GH + +L+L   M       N F+ + ++   A +   A   G+Q
Sbjct: 267 DVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGS--GAFNLGRQ 324

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  ++    D D+ +   LV++                               YA  G 
Sbjct: 325 IHGFMVKANADSDNYIAFGLVDM-------------------------------YAKHGL 353

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           ++DA++VFD       V+WN++ISG     +  EAL LF +MR+ G   + +TLA+VL +
Sbjct: 354 LDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKS 413

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            +SL  +   +QVH  A K+G + D  V + L+D+Y K                      
Sbjct: 414 TASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWK---------------------- 451

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    C  +  A  +F    +  +I++ SMI  LSQ     +A+ LF  M +  L 
Sbjct: 452 ---------CDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLD 502

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D F L+S+++ACA++S+ E G+QV A +      SD     +LV  Y KCG        
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLA 562

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                      AL +F+ M +  + P  IT T++L AC+H GLV
Sbjct: 563 FSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLV 622

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            E +++F++MK  + I+   EHY+CM+DL  RAG L++A+ L+  MPF+ +  +W ++L 
Sbjct: 623 DEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLA 682

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
               H D  LGR  AE++  L+PE +  ++ L++ +A++G W+  + +R +M++  V K 
Sbjct: 683 ASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKE 742

Query: 574 PGCSWAD 580
           P  SW +
Sbjct: 743 PAMSWVE 749



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 142/565 (25%), Positives = 243/565 (43%), Gaps = 109/565 (19%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
           G QLH   +  G L   + +AN L+ MY   G   +A ++FDE    RN  SWN ++  +
Sbjct: 119 GTQLHALAMATG-LGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAY 177

Query: 83  MKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
           +K      ++++F  M     Q N+F ++ +++    +    LE G+++H+ ++  G D 
Sbjct: 178 VKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGS--RDLEAGRKVHAMVIRTGYD- 234

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
                                          D F  +AL+  Y+  G +  A  VF +  
Sbjct: 235 ------------------------------KDVFTANALVDMYSKLGDIRMAAVVFGKVP 264

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           +T  V WN+ ISG + +  D  AL L  +M+ +G++ +  TL+S+L AC+  G    G+Q
Sbjct: 265 ETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQ 324

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +HG   K     D  +A  L+D Y+K G+  DA K+F  +                    
Sbjct: 325 IHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWI-------------------- 364

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
                      P + L+ WN++I G S      EAL LFC M K    +++ +LA+V+ +
Sbjct: 365 -----------PQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKS 413

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------------- 417
            A++ ++    QV A    +G  SD  +   L+D Y KC                     
Sbjct: 414 TASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAF 473

Query: 418 ------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM-K 464
                       G DA+ LF EM   G+ P     +++L+AC      ++G++    + K
Sbjct: 474 TSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
            Q+  D  +   + +V  +A+ G + +A      +P E  V  WS+++ G   HG     
Sbjct: 534 RQFMSD--VFAGNALVYTYAKCGSIEDADLAFSGLP-EKGVVSWSAMIGGLAQHGHGKRA 590

Query: 525 RKVAERMIELDPENACAYIQLSSIF 549
             V  RM+  D   +  +I ++S+ 
Sbjct: 591 LDVFHRMV--DEHISPNHITMTSVL 613



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/467 (25%), Positives = 198/467 (42%), Gaps = 81/467 (17%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ++ +  LL       S+  G  +H H LK G+        N LL  Y +C  P  A  +F
Sbjct: 4   LETIGPLLTRYAATQSLLQGAHIHAHLLKSGLFAV---FRNHLLSFYSKCRLPGSARRVF 60

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAA 120
           DE+P     SW++++  +        +L  F  M     + N+F   +++     A    
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG--- 117

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
             +G Q+H+  +  GL  D  + ++LV +YG                            G
Sbjct: 118 --FGTQLHALAMATGLGGDIFVANALVAMYG----------------------------G 147

Query: 181 YANCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           +   G +++AR VFD    + ++V WN ++S Y+ N+  + A+ +F +M   GV  +   
Sbjct: 148 F---GFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFG 204

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            + V++AC+    LE G++VH    + G   DV  A+AL+D YSK               
Sbjct: 205 FSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSK--------------- 249

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                            G I  A  +F  +P   ++SWN+ I G   +G    AL+L   
Sbjct: 250 ----------------LGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQ 293

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M    L  + F+L+S++ ACA   +  LG Q+   +     DSD  I+  LVD Y K G 
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGL 353

Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
             DA  +F+ +     +  ++ + A++S C H     E    F  M+
Sbjct: 354 LDDAKKVFDWIP----QRDLVLWNALISGCSHGAQHAEALSLFCRMR 396



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 162/376 (43%), Gaps = 69/376 (18%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+S Y+ C     ARRVFD   D   V W+S+++ Y +N    +AL  F  MR   V  +
Sbjct: 43  LLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCN 102

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
              L  VL      GF   G Q+H  A   G+  D+ VA+AL+  Y   G   +A  +F 
Sbjct: 103 EFVLPVVLKCAPDAGF---GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFD 159

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           E                + C R              + +SWN ++    +N     A+ +
Sbjct: 160 E----------------AGCER--------------NTVSWNGLMSAYVKNDRCSHAVKV 189

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    ++ ++F  + V++AC     LE G +V A V   G D D   + +LVD Y K
Sbjct: 190 FGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSK 249

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
            G                                   AL L  +M+++G+ P + T ++I
Sbjct: 250 LGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSI 309

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L AC   G    G++    M  + + D +      +VD++A+ G L++A  + + +P + 
Sbjct: 310 LKACAGSGAFNLGRQIHGFMV-KANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIP-QR 367

Query: 504 DVGMWSSILRGCVAHG 519
           D+ +W++++ GC +HG
Sbjct: 368 DLVLWNALISGC-SHG 382



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 39/251 (15%)

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            +  N +++ YS C     A+ +F  +P+   +SW+S++   S N  P +AL  F +M  
Sbjct: 37  AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRS 96

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
             +R ++F L  V+    +      G Q+ A     GL  D  ++ +LV  Y   G+   
Sbjct: 97  CSVRCNEFVLPVVLKCAPDAG---FGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDE 153

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                           A+ +F EM   GV+P    F+ +++AC 
Sbjct: 154 ARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACT 213

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
               ++ G+K   AM  +   D ++   + +VD++++ G +  A  +  ++P E DV  W
Sbjct: 214 GSRDLEAGRK-VHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP-ETDVVSW 271

Query: 509 SSILRGCVAHG 519
           ++ + GCV HG
Sbjct: 272 NAFISGCVLHG 282



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C +  +   GKQ+H H +K+  ++      N L+  Y +CG+  DA L F  +
Sbjct: 508 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFA-GNALVYTYAKCGSIEDADLAFSGL 566

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P +   SW+AMI G  + GH +++L +F+ M  +    N  +   ++     A L   E 
Sbjct: 567 PEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVD-EA 625

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
            +  +S   + G++      + +++L G+ G  + A +++N M
Sbjct: 626 KRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSM 668


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 168/504 (33%), Positives = 249/504 (49%), Gaps = 100/504 (19%)

Query: 172 FCLSALISGYANCGKMND---ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           F  S L++ Y++  K+ND   AR +FDR    S + WN++I  Y+ N    + ++LFH++
Sbjct: 46  FVSSRLLALYSD-PKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL 104

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
                L D  TL  V+  C+ LG ++ GKQ+HG A K+G   DV V  +L++ YSK G  
Sbjct: 105 VHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEI 163

Query: 289 SDACKLFSELKVYDTILLNTMITVY-------------------------------SSCG 317
             A K+F  +   D +L N++I  Y                               S CG
Sbjct: 164 DCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCG 223

Query: 318 RIEDAKHIFRTMPNKSLISWNSMI-------------------------------VGLSQ 346
           ++E A+ +F  MP ++L+SWN+MI                                G   
Sbjct: 224 KVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYEL 283

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           NG  ++A+ +F  M KL  R    +L SV+SA + ++ L  G  + + +   G + D I+
Sbjct: 284 NGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGIL 343

Query: 407 STSLVDFYCKCG---------------------------------YDALALFNEMRNTGV 433
            TSL++ Y KCG                                   ALALF EM  TG+
Sbjct: 344 GTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGL 403

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           KP  I F  +L+AC+H GLV +G+++FD M  +Y I+P +EHY C+VD+  RAG L EA 
Sbjct: 404 KPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAK 463

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
           N IE MP   +  +W S+L G   HG   +G   A+R+IE+ PE    YI LS+++A SG
Sbjct: 464 NTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASG 523

Query: 554 EWEKSSLIRDIMREKHVGKLPGCS 577
            WEK S +R++M ++   K PGCS
Sbjct: 524 MWEKVSHVREMMYKRGFRKDPGCS 547


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 174/606 (28%), Positives = 290/606 (47%), Gaps = 100/606 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C T      G  +H   LK G L+S + + N L+ MY + G+   ++ +F+ M
Sbjct: 216 LVSVVPACGTERDEGFGLSVHGLVLKSG-LDSVVNLGNALVDMYGKFGDLESSMRVFNGM 274

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             +N  SWN+ +  F   G  E  L++F VM +      ++ +S    A  DL     GK
Sbjct: 275 QEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGK 334

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           ++H + +   ++ D  + +SL+++Y                               A  G
Sbjct: 335 EVHGYSIRRAMESDIFIANSLMDMY-------------------------------AKFG 363

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            +  A  +F+     + V WN+MI+    N  +TEA  L  +M++NG   ++ TL ++L 
Sbjct: 364 CLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLP 423

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS +  ++ GKQ+H  +    ++ D+ V++AL+D                         
Sbjct: 424 ACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALID------------------------- 458

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                 VY+ CG++  A+ IF     K  +S+N++IVG SQ+    E+L LF  M    +
Sbjct: 459 ------VYAKCGQLSVAQDIF-DRSEKDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGI 511

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA-- 423
             D  S    +SACAN+S+ + G+++   +    L++   ++ SL+D Y K G  A A  
Sbjct: 512 EYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASK 571

Query: 424 -------------------------------LFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                          LF+ M++ GV    +++ A+LSAC H GL
Sbjct: 572 IFNRITRKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGL 631

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V  G+K+F  M  Q +I P+  HY+CMVDL  RAG L+E+V +I  MPF A+  +W ++L
Sbjct: 632 VDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAGQLSESVEIITNMPFPANSDVWGALL 690

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  HGD  L R  AE + EL PE++  Y  L ++++ SG W +++ I+ +M+ + V K
Sbjct: 691 GSCRIHGDIELARLAAEHLFELKPEHSGYYTLLRNMYSESGMWNEANEIKTLMKSRKVQK 750

Query: 573 LPGCSW 578
            P  SW
Sbjct: 751 NPAYSW 756



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 142/560 (25%), Positives = 253/560 (45%), Gaps = 104/560 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G +LH   L++G+L + +   N L+  Y   G   DA  +FDEMP R+  SWN+++   +
Sbjct: 130 GAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALL 189

Query: 84  KLGHKEKSLQ-LFNVMPQKNDFSWNMLISGFAKADLAALE-YGKQIHSHILVNGLDFDSV 141
             G  E + + +  +M      +   L+S          E +G  +H  +L +GLD    
Sbjct: 190 TNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVN 249

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           LG++LV++YGK GD  S+ +V N M+E ++                              
Sbjct: 250 LGNALVDMYGKFGDLESSMRVFNGMQEKNE------------------------------ 279

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            V WNS +  +       + L +F  M  + V   + TL+S+L A   LG+   GK+VHG
Sbjct: 280 -VSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHG 338

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
           ++ +  +  D+ +A++L+D Y+K G     C                          +E 
Sbjct: 339 YSIRRAMESDIFIANSLMDMYAKFG-----C--------------------------LEK 367

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A  IF  +  ++++SWN+MI  L+QNG+  EA  L   M K     + F+L +++ AC+ 
Sbjct: 368 ASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSR 427

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------- 418
           ++S+++G+Q+ A      L SD  +S +L+D Y KCG                       
Sbjct: 428 VASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRSEKDDVSYNTLI 487

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM-KWQYH 468
                    +++L LF +MR+ G++   ++F   LSAC +    K+G++    + +   +
Sbjct: 488 VGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLN 547

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
             P +   + ++DL+ + G L  A  +  ++    DV  W++++ G   HG       VA
Sbjct: 548 THPFLA--NSLLDLYTKGGMLATASKIFNRIT-RKDVASWNTMILGYGMHGQI----DVA 600

Query: 529 ERMIELDPENACAYIQLSSI 548
             + +L  ++   Y  +S I
Sbjct: 601 FELFDLMKDDGVDYDHVSYI 620



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 205/518 (39%), Gaps = 108/518 (20%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR--NCFSWNAMIEGF 82
           ++ H   L  G L ++LP+A  LL  Y    +   A L+    P R  + F WN++    
Sbjct: 22  RRAHAASLVSGALTASLPLAGALLLSYAALRDIPSARLILRHHPLRLRSAFLWNSLSRAL 81

Query: 83  MKLGHKEKSLQLFNVM------PQKNDFSWNM-LISGFAKADLAALEYGKQIHSHILVNG 135
              G   ++L+++N M      P    F + +   +    A+      G ++H+  L  G
Sbjct: 82  ASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEAEHPAKGAELHAAALRRG 141

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
           L                                 D F  + L++ YA  G+  DARRVFD
Sbjct: 142 LLL------------------------------ADVFAGNTLVTFYAARGRAADARRVFD 171

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
                  V WNS++S  ++N    +A      M R+G+  + ++L SV+ AC +      
Sbjct: 172 EMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGF 231

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G  VHG   K G+   V + +AL+D Y K                               
Sbjct: 232 GLSVHGLVLKSGLDSVVNLGNALVDMYGK------------------------------- 260

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
            G +E +  +F  M  K+ +SWNS +   +  G   + L++F  M++ ++     +L+S+
Sbjct: 261 FGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSL 320

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------- 418
           + A  ++    LG++V        ++SD  I+ SL+D Y K G                 
Sbjct: 321 LPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNV 380

Query: 419 ----------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                            +A +L  EM+  G  P   T   +L AC     VK G++    
Sbjct: 381 VSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQ---I 437

Query: 463 MKWQYH--IDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
             W  H  +  ++   + ++D++A+ G L+ A ++ ++
Sbjct: 438 HAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR 475


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 295/609 (48%), Gaps = 97/609 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C     I +GK +H  +  K  L+  L + N L+ MY +CG  T+A ++F   
Sbjct: 295 LVTVLPVCAREREIGLGKGVH-GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMN 353

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-AKADLAALEYGKQ 126
             +N  SWN M+ GF   G    +   F+V+ Q       ML  G   KAD   +     
Sbjct: 354 NNKNVVSWNTMVGGFSAEGDTHGT---FDVLRQ-------MLAGGEDVKADEVTILNAVP 403

Query: 127 IHSHILVNGLDFDSVLGS-SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +  H        +S L S   ++ Y    +F     V N           A ++ YA CG
Sbjct: 404 VCFH--------ESFLPSLKELHCYSLKQEFVYNELVAN-----------AFVASYAKCG 444

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++ A+RVF      +   WN++I G+  +N+   +L    +M+ +G+L D+ T+ S+LS
Sbjct: 445 SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 504

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS L  L  GK+VHG                ++  + +R           +L VY ++L
Sbjct: 505 ACSKLKSLRLGKEVHGF---------------IIRNWLER-----------DLFVYLSVL 538

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                ++Y  CG +   + +F  M +KSL+SWN++I G  QNG P  AL +F  M    +
Sbjct: 539 -----SLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 593

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           ++   S+  V  AC+ + SL LG +  A      L+ D  I+ SL+D Y K G       
Sbjct: 594 QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 653

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +A+ LF EM+ TG  P  +TF  +L+AC+H GL
Sbjct: 654 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 713

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI-EQMPFEADVGMWSSI 511
           + EG ++ D MK  + + P ++HY+C++D+  RAG L++A+ ++ E+M  EADVG+W S+
Sbjct: 714 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 773

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  H +  +G KVA ++ EL+PE    Y+ LS+++A  G+WE    +R  M E  + 
Sbjct: 774 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 833

Query: 572 KLPGCSWAD 580
           K  GCSW +
Sbjct: 834 KDAGCSWIE 842



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 132/571 (23%), Positives = 237/571 (41%), Gaps = 124/571 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C     + +G  +H   +K G++     + N L+  Y   G  TDAL LFD MP R
Sbjct: 193 VIKACAGMSDVGIGLAVHGLVVKTGLVEDVF-VGNALVSFYGTHGFVTDALQLFDIMPER 251

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL--------- 121
           N  SWN+MI  F   G  E+S  L   M ++N         G    D+A L         
Sbjct: 252 NLVSWNSMIRVFSDNGFSEESFLLLGEMMEENG-------DGAFMPDVATLVTVLPVCAR 304

Query: 122 ----EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
                 GK +H   +   LD + VL ++L+++Y KCG   +A  +               
Sbjct: 305 EREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF-------------- 350

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG--VLE 235
                   KMN+ + V         V WN+M+ G+ +  +      +  +M   G  V  
Sbjct: 351 --------KMNNNKNV---------VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKA 393

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  T+ + +  C    FL   K++H ++ K   + + +VA+A + +Y+K           
Sbjct: 394 DEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAK----------- 442

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                               CG +  A+ +F  + +K++ SWN++I G +Q+  P  +LD
Sbjct: 443 --------------------CGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLD 482

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
               M    L  D F++ S++SAC+ + SL LG++V   +    L+ D  +  S++  Y 
Sbjct: 483 AHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYI 542

Query: 416 KCG--------YD-------------------------ALALFNEMRNTGVKPTIITFTA 442
            CG        +D                         AL +F +M   G++   I+   
Sbjct: 543 HCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP 602

Query: 443 ILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSC-MVDLFARAGCLNEAVNLIEQMP 500
           +  AC     ++ G++    A+K   H+  +    +C ++D++A+ G + ++  +   + 
Sbjct: 603 VFGACSLLPSLRLGREAHAYALK---HLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK 659

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
            E     W++++ G   HG      K+ E M
Sbjct: 660 -EKSTASWNAMIMGYGIHGLAKEAIKLFEEM 689



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 131/567 (23%), Positives = 242/567 (42%), Gaps = 116/567 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           + L  LLQ+      I +G+++H        L +   +  R++ MY  CG+P D+  +FD
Sbjct: 85  EALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFD 144

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-----FSWNMLISGFAKADLAA 120
            +  +N F WNA+I  + +    ++ L+ F  M    D     F++  +I   A A ++ 
Sbjct: 145 ALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIK--ACAGMSD 202

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           +  G  +H  ++  GL  D  +G++LV+ YG                             
Sbjct: 203 VGIGLAVHGLVVKTGLVEDVFVGNALVSFYG----------------------------- 233

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-MRRNG---VLED 236
               G + DA ++FD   + + V WNSMI  +  N    E+ LL  + M  NG    + D
Sbjct: 234 --THGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPD 291

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
            +TL +VL  C+    +  GK VHG A K+ +  ++++ +AL+D YSK            
Sbjct: 292 VATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSK------------ 339

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                              CG I +A+ IF+   NK+++SWN+M+ G S  G      D+
Sbjct: 340 -------------------CGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDV 380

Query: 357 FCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
              M     D++ D+ ++ + +  C + S L   +++           +++++ + V  Y
Sbjct: 381 LRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASY 440

Query: 415 CKCGYDALA--LFN-------------------------------EMRNTGVKPTIITFT 441
            KCG  + A  +F+                               +M+ +G+ P   T  
Sbjct: 441 AKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVC 500

Query: 442 AILSACDHCGLVKEGQK--WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           ++LSAC     ++ G++   F    W   ++ ++  Y  ++ L+   G L     L + M
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNW---LERDLFVYLSVLSLYIHCGELCTVQALFDAM 557

Query: 500 PFEADVGMWSSILRGCVAHG--DKGLG 524
             ++ V  W++++ G + +G  D+ LG
Sbjct: 558 EDKSLVS-WNTVITGYLQNGFPDRALG 583


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  268 bits (685), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 166/568 (29%), Positives = 261/568 (45%), Gaps = 83/568 (14%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y++CG  +DA   F+EMP RN  SW +++ G    G   ++ +LFNVMP++N  
Sbjct: 111 NAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVV 170

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SWN ++ G  ++                                     G    A +V N
Sbjct: 171 SWNSMLVGLIRS-------------------------------------GQLEEARRVFN 193

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
            M        + +I+GYA   +M +AR +FD   D + V W SMISGY       E   L
Sbjct: 194 EMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCL 253

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
           F KM    V+    +  +++   +  GF +       +  +          +++++ Y +
Sbjct: 254 FQKMPERNVV----SWTAMIGGFAWNGFYKEALNSMSYNTQS--------CNSMINGYIR 301

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
            G    A  LF  + V D I   +MI  Y + G+I  A ++F  MP++  ++W  M+ G 
Sbjct: 302 IGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGH 361

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
            QN    EA  LF  M    +     + + ++ A   ++ L+ G Q    +     + D 
Sbjct: 362 VQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDL 421

Query: 405 IISTSLVDFYCKCGY---------------------------------DALALFNEMRNT 431
           I+  SL+  Y KCG                                  +AL +F  M  +
Sbjct: 422 ILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTS 481

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
           G  P  +TF  ILSAC H GL+ +G + FDAM   + I P++EHY CMV+L  RAG + E
Sbjct: 482 GTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEE 541

Query: 492 AVNLIEQMPFEADVGMWSSILRGC-VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           A   I ++PFE D+ +W ++L  C     + G+ R+ A+R++ELDP NA A++ L +I A
Sbjct: 542 AEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVLCNIHA 601

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           + G+  +   +R  M  K V K+PGCSW
Sbjct: 602 SIGQRAEEGQLRKEMGLKGVRKVPGCSW 629



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 155/312 (49%), Gaps = 30/312 (9%)

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
           +S I   +S     EA  +  +M   GVL+      S+LS  S  GF++  + +     +
Sbjct: 45  DSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALF----E 100

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
           +    +V+  +A+L  Y + G  SDAC+ F E+   + +   +++   ++ GRI +A+ +
Sbjct: 101 IMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEAREL 160

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           F  MP ++++SWNSM+VGL ++G   EA  +F   N++ ++  + S   +I+  A  S +
Sbjct: 161 FNVMPERNVVSWNSMLVGLIRSGQLEEARRVF---NEMPVK-SQVSWNVMIAGYAEHSRM 216

Query: 386 ELGEQVFARVTIIGLDSDQIIS-TSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTA 442
           E      ARV   G+    +++ TS++  YC+ G   +   LF +M    V    +++TA
Sbjct: 217 EE-----ARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNV----VSWTA 267

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           ++      G  KE     ++M +        +  + M++ + R G L +A +L + +P  
Sbjct: 268 MIGGFAWNGFYKEA---LNSMSYN------TQSCNSMINGYIRIGQLEKAQSLFDTIPVR 318

Query: 503 ADVGMWSSILRG 514
             +  W+S++ G
Sbjct: 319 DKIS-WTSMING 329



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 14/195 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +      +  G+Q H   L K      L + N L+ MY +CG   DA  +F +M  R
Sbjct: 392 LLGAAGAMAYLDQGRQFHC-LLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISR 450

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWN+MI GF   G   ++L++F  M       N  ++  ++S  + A L  L  G +
Sbjct: 451 DLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGL--LNQGWE 508

Query: 127 IH---SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           +    S +       +  +   +VNL G+ G    A + ++ +    D  +   + G   
Sbjct: 509 LFDAMSDVFAIQPQLEHYV--CMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCG 566

Query: 184 CGKMND--ARRVFDR 196
            G +N   ARR   R
Sbjct: 567 FGMINTGVARRAAKR 581


>gi|297811097|ref|XP_002873432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319269|gb|EFH49691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 970

 Score =  268 bits (685), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 187/581 (32%), Positives = 291/581 (50%), Gaps = 88/581 (15%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG-- 81
           G+++H H +  G+++  + I N L+ MY +CG+  DA  +F  M  ++  SWN+MI G  
Sbjct: 332 GREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMTEKDSVSWNSMITGLD 391

Query: 82  ----FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
               F++   + +S++   ++P     S+ ++ S  + A L   + G+QIH   L  G+D
Sbjct: 392 QNSCFIEAVERYQSMRRHEILPG----SFTLISSISSCASLKWAKLGQQIHGESLKLGID 447

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            +  + ++L+ LY + G                  CL             N+ R++F   
Sbjct: 448 LNVSVSNALMTLYAETG------------------CL-------------NECRKIFSSM 476

Query: 198 TDTSSVMWNSMISGYISNNED-TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
            +   V WNS+I    S+     EA+  F    R G   +  T +SVLSA SSL F E G
Sbjct: 477 PEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELG 536

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           KQ+HG A K  + D+    +AL+  Y K                               C
Sbjct: 537 KQIHGLALKYNIADEATTENALIACYGK-------------------------------C 565

Query: 317 GRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
           G ++  + IF  M  +   ++WNSMI G   N    +ALDL   M +   R+D F  A+V
Sbjct: 566 GEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMMQTGQRLDSFMYATV 625

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDALALFNE 427
           +SA A++++LE G +V A      L+SD ++ ++LVD Y KCG        ++ + LF  
Sbjct: 626 LSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPLFAN 685

Query: 428 MRNTG-VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           M+  G   P  +TF  +LSAC H GL++EG K F++M   Y + P IEH+SCM DL  RA
Sbjct: 686 MKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRA 745

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCV-AHGDKG-LGRKVAERMIELDPENACAYIQ 544
           G L++  + IE+MP + +V +W ++L  C  A+G K  LG+K AE + +L+PENA  Y+ 
Sbjct: 746 GELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVL 805

Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA---DGI 582
           L +++A  G WE     R  M++  V K  G SW    DG+
Sbjct: 806 LGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGV 846



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 134/533 (25%), Positives = 240/533 (45%), Gaps = 106/533 (19%)

Query: 17  THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWN 76
           T   + + +Q+     K G L + L + + L+  + + G+   A  +F++M  RN  + N
Sbjct: 220 TEPDVRLLEQIMCTIQKSGFL-TDLFVGSGLVSAFAKSGSLIHARKIFNQMETRNAVTLN 278

Query: 77  AMIEGFMKLGHKEKSLQLF---NVMPQKNDFSWNMLISGFAKADLA---ALEYGKQIHSH 130
            ++ G ++    E++ +LF   N M   +  S+ +L+S F +  LA    L+ G+++H H
Sbjct: 279 GLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGH 338

Query: 131 ILVNGL-DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
           ++  GL DF   +G+ LVN+Y K                               CG + D
Sbjct: 339 VITTGLVDFMVGIGNGLVNMYAK-------------------------------CGSIAD 367

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           ARRVF   T+  SV WNSMI+G   N+   EA+  +  MRR+ +L  + TL S +S+C+S
Sbjct: 368 ARRVFCFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILPGSFTLISSISSCAS 427

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L + + G+Q+HG + K+G+  +V V++AL+  Y++ G  ++  K+FS             
Sbjct: 428 LKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFS------------- 474

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL-SQNGSPIEALDLFCNMNKLDLRMD 368
                             +MP    +SWNS+I  L S   S  EA+  F N  +   +++
Sbjct: 475 ------------------SMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLN 516

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
           + + +SV+SA +++S  ELG+Q+        +  +     +L+  Y KCG          
Sbjct: 517 RITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFS 576

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                     AL L   M  TG +     +  +LSA      ++
Sbjct: 577 RMSERRDDVTWNSMISGYIHNELLAKALDLVWFMMQTGQRLDSFMYATVLSAFASVATLE 636

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            G +   A   +  ++ ++   S +VD++++ G L+ A+     MP  A++ +
Sbjct: 637 RGME-VHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPLFANMKL 688



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 143/625 (22%), Positives = 254/625 (40%), Gaps = 157/625 (25%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            +QSC  H      K  H    K G L   + + N L+  Y+  G+   A  +FDEMP R
Sbjct: 9   FVQSCIGHRG--AAKLFHSRLYKNG-LEKDVYLCNNLINAYLETGDSVSARKVFDEMPLR 65

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----DLAALEYGKQ 126
           NC SW  ++ G+ + G  +++L     M ++  FS +       +A    D   + +G+Q
Sbjct: 66  NCVSWACVVSGYSRNGEHKEALVFLRDMVKEGVFSNHYAFVSALRACQELDSVGILFGRQ 125

Query: 127 IH--------------SHILVN-------GLDF-----------DSVLGSSLVNLYGKCG 154
           IH              S++L++        L +           +SV  +S++++Y + G
Sbjct: 126 IHGLLFKLSYAVDAVVSNVLISMYWKCGGSLGYALRAFDDVQVKNSVSWNSIISVYSQTG 185

Query: 155 DFNSANQVLNMMK----------------------EPDD-------------------FC 173
           D   A ++   M+                      EPD                    F 
Sbjct: 186 DQRFAFKMFYSMQCDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGFLTDLFV 245

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
            S L+S +A  G +  AR++F++    ++V  N ++ G +      EA  LF  M  N +
Sbjct: 246 GSGLVSAFAKSGSLIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM--NSM 303

Query: 234 LEDASTLASVL--------SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285
           + D S  + V+        S    +G L+ G++VHGH    G++D ++            
Sbjct: 304 I-DVSPESYVILLSSFPEYSLAEEVG-LKKGREVHGHVITTGLVDFMVG----------- 350

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
                              + N ++ +Y+ CG I DA+ +F  M  K  +SWNSMI GL 
Sbjct: 351 -------------------IGNGLVNMYAKCGSIADARRVFCFMTEKDSVSWNSMITGLD 391

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           QN   IEA++ + +M + ++    F+L S IS+CA++   +LG+Q+      +G+D +  
Sbjct: 392 QNSCFIEAVERYQSMRRHEILPGSFTLISSISSCASLKWAKLGQQIHGESLKLGIDLNVS 451

Query: 406 ISTSLVDFYCKCG----------------------------------YDALALFNEMRNT 431
           +S +L+  Y + G                                   +A+A F      
Sbjct: 452 VSNALMTLYAETGCLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRA 511

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
           G K   ITF+++LSA       + G K    +  +Y+I  E    + ++  + + G ++ 
Sbjct: 512 GQKLNRITFSSVLSAVSSLSFGELG-KQIHGLALKYNIADEATTENALIACYGKCGEMDG 570

Query: 492 AVNLIEQMPFEADVGMWSSILRGCV 516
              +  +M    D   W+S++ G +
Sbjct: 571 CEKIFSRMSERRDDVTWNSMISGYI 595



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 19/195 (9%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIE 80
            +GKQ+H   LK  I +      N L+  Y +CG       +F  M  RR+  +WN+MI 
Sbjct: 534 ELGKQIHGLALKYNIADEA-TTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMIS 592

Query: 81  GFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
           G++      K+L L   M Q     + F +  ++S F  A +A LE G ++H+  +   L
Sbjct: 593 GYIHNELLAKALDLVWFMMQTGQRLDSFMYATVLSAF--ASVATLERGMEVHACSVRACL 650

Query: 137 DFDSVLGSSLVNLYGKCGD-------FNS----ANQVLNMMKEPDDFCLSALISGYANCG 185
           + D V+GS+LV++Y KCG        FN+    AN  L+    PD      ++S  ++ G
Sbjct: 651 ESDVVVGSALVDMYSKCGRLDYALRFFNTMPLFANMKLDGQTPPDHVTFVGVLSACSHAG 710

Query: 186 KMNDARRVFDRTTDT 200
            + +  + F+  +D+
Sbjct: 711 LLEEGFKHFESMSDS 725


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  268 bits (685), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 169/606 (27%), Positives = 293/606 (48%), Gaps = 100/606 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C T      G  +H   +K G LN+ + +AN L+ MY + G+   ++ +FD M
Sbjct: 44  LVSVVPACGTEQEEKFGLSIHALAVKVG-LNTMVNLANALVDMYGKFGDVEASMQVFDGM 102

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             +N  SWN+ I  F+  G     L++F  M + N    ++ +S    A  +L + + G+
Sbjct: 103 LEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGR 162

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           ++H + +   +D D  + +SLV++Y                               A  G
Sbjct: 163 EVHGYSIKRAMDLDIFVANSLVDMY-------------------------------AKFG 191

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            +  A  +F++  D + V WN+MI+  + N  +TEA  L   M+++G   ++ TL +VL 
Sbjct: 192 SLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLP 251

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ +  L+ GKQ+H  + + G++ D+ +++AL+D                         
Sbjct: 252 ACARMASLKMGKQIHAWSIRRGLMFDLFISNALID------------------------- 286

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                 +YS CG++  A++IF     K  +S+N++I+G SQ+    E+L LF  M  + +
Sbjct: 287 ------MYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGI 339

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK--------- 416
             D  S    +SAC N+S  + G+++   +    L     +S SL+D Y K         
Sbjct: 340 DYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASK 399

Query: 417 -----------------CGYD-------ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                             GY        A  LF  M+  G+    +++ A+L+AC H GL
Sbjct: 400 IFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGL 459

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V +G+K+F  M  Q +I+P+  HY+CMVDL  RAG L++   +I  MPF A+  +W ++L
Sbjct: 460 VDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALL 518

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  HG+  L +  AE + EL PE++  Y  + +++A +G W +++ IR +M+ + V K
Sbjct: 519 GACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQK 578

Query: 573 LPGCSW 578
            P  SW
Sbjct: 579 NPAYSW 584



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 124/500 (24%), Positives = 222/500 (44%), Gaps = 100/500 (20%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM--LISGFAKADLAALE-Y 123
           MP R+  SWN+++  F+  G    + +    M  ++ F  N+  L+S          E +
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSM-MRSGFPLNVASLVSVVPACGTEQEEKF 59

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G  IH+  +  GL+    L ++LV++YGK GD  ++ QV + M E ++   ++ I  + N
Sbjct: 60  GLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLN 119

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G   D  R                               +F KM  + V+  + TL+S+
Sbjct: 120 AGFYGDVLR-------------------------------MFRKMSEHNVMPGSITLSSL 148

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L A   LG  + G++VHG++ K  +  D+ VA++L+D Y+K G    A  +F ++K    
Sbjct: 149 LPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMK---- 204

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                                      +++++SWN+MI  L QNG+  EA  L  +M K 
Sbjct: 205 ---------------------------DRNVVSWNAMIANLVQNGAETEAFRLVTDMQKS 237

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
               +  +L +V+ ACA ++SL++G+Q+ A     GL  D  IS +L+D Y KCG     
Sbjct: 238 GECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLA 297

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                      +++L LF +MR+ G+    ++F   LSAC +  
Sbjct: 298 RNIFERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLS 357

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           + K G++    +  +  +       + ++DL+ + G L  A  +  ++  + DV  W+++
Sbjct: 358 VFKHGKE-IHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKIT-KKDVASWNTM 415

Query: 512 LRGCVAHGDKGLGRKVAERM 531
           + G   HG   +  ++ E M
Sbjct: 416 ILGYGMHGQIDIAFELFELM 435


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  268 bits (685), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 174/618 (28%), Positives = 307/618 (49%), Gaps = 82/618 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA-NRLLQMYMRCGN--PTDALLLF 64
           L R + +   HH  H+   + LH L   +  S  PI   RLL +Y    +  P+ A +  
Sbjct: 74  LLRPVAALLHHHRSHLRLGVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASVAA 133

Query: 65  DE-MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLA 119
           D  +P      +N +I   ++ G   ++L  +  M +     + F++  ++   A+A   
Sbjct: 134 DSTLP----LPYNVLISSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEAR-- 187

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L  G+ +H H    G+D +    ++L+++Y KCGD  SA +V + M + D    +++IS
Sbjct: 188 ELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMIS 247

Query: 180 GYANCGKMNDA----RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
            YA  G+  +A    RR+ D  T+ +SV WN++  GYI   +   A+ L  +M R G   
Sbjct: 248 SYAAVGQWAEAMELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEV 307

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D  TL   L+ACS +G+L  GK++HG A ++   D V   S                   
Sbjct: 308 DYVTLVIGLNACSRVGWLRLGKEIHGLAVRM-CCDQVESVS------------------- 347

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                      N +IT+Y+ C  +E A+ +FR +    +++WN+M+   + +    EA  
Sbjct: 348 -----------NALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASS 396

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           +F  M    ++ +  ++ + ++ CA +++L+ G+++   +   G    +++  SL+D Y 
Sbjct: 397 IFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYS 456

Query: 416 KCG--------YD-------------------------ALALFNEMRNTGVKPTIITFTA 442
           K G        +D                         AL LF +M ++G+KP  I    
Sbjct: 457 KSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVT 516

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H GLV EG++ F+ M   Y I P++EHYSCM+DL+ARAG L +A  +++  PF 
Sbjct: 517 VLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFP 576

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               MW++++  C   G+  +G + A +++E+  ENA  Y+ +++++A +G W++ + +R
Sbjct: 577 PTSTMWAALVGACHDRGNIEIGERAARKLLEMRTENAGHYVLIANMYAAAGCWDELATVR 636

Query: 563 DIMREKHVGKLPGCSWAD 580
            +MR+  V K PG +W D
Sbjct: 637 KLMRDLGVTKAPGLAWTD 654


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  268 bits (685), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 179/596 (30%), Positives = 283/596 (47%), Gaps = 101/596 (16%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +  G+ LH   LK G+ NS   + N LL MY++   PTDA  +FDEM  R+  ++N MI 
Sbjct: 223 VKQGQGLHGFTLKSGV-NSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMIC 281

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF---AKADLAALEYGKQIHSHILVNGLD 137
           G++KL   E+S+++F  +   + F  ++L       A   L  L   K I++++L  G  
Sbjct: 282 GYLKLEMVEESVKMF--LENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGF- 338

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
              VL S++ N+                           LI  YA CG M  AR VF+  
Sbjct: 339 ---VLESTVKNI---------------------------LIDVYAKCGDMITARDVFNSM 368

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
               +V WNS+ISGYI + +  EA+ LF  M       D  T   ++S  + L  L+ GK
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGK 428

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
            +H +  K G+  D+ V++AL+D Y+K                               CG
Sbjct: 429 GLHSNGIKSGIYIDLSVSNALIDMYAK-------------------------------CG 457

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            + D+  IF +M     ++WN++I    + G     L +   M K  +  D  +    + 
Sbjct: 458 EVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLP 517

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------- 418
            CA++++  LG+++   +   G +S+  I  +L++ Y KCG                   
Sbjct: 518 MCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVT 577

Query: 419 --------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                           AL  F +M  +G+ P  + F A++ AC H GLV++G   F+ MK
Sbjct: 578 WTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMK 637

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             Y IDP IEHY+C+VDL +R+  +++A   I+ MP E D  +W+S+LR C   GD    
Sbjct: 638 THYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETA 697

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +V+ R+IEL+P++    I  S+ +A   +W+K SLIR  +R+KH+ K PG SW +
Sbjct: 698 ERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIE 753



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 151/595 (25%), Positives = 258/595 (43%), Gaps = 116/595 (19%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFN-VMPQKNDFSWNMLISGFAKADL--AALE-YGKQIH 128
           F    +I+ +        SL +F  V P KN + WN +I  F+K      ALE YGK   
Sbjct: 40  FFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRE 99

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           S +  +   F SV+ +       + GD     Q+L M  E D +  +AL+  Y+  G ++
Sbjct: 100 SKVSPDKYTFPSVIKACAGLFDAEMGDL-VYKQILEMGFESDLYVGNALVDMYSRMGLLS 158

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR+VFD       V WNS+ISGY S+    EAL ++H++R + ++ D+ T++SVL A +
Sbjct: 159 RARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFA 218

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           +L  ++ G+ +HG   K GV    +V + LL  Y K   P+DA ++F E+ V D++  NT
Sbjct: 219 NLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNT 278

Query: 309 MI-------------------------------TVYSSCGRIED---AKHIFRTMPNKSL 334
           MI                               +V  +CG + D   AK+I+  M     
Sbjct: 279 MICGYLKLEMVEESVKMFLENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGF 338

Query: 335 I------------------------SWNSM-----------IVGLSQNGSPIEALDLFCN 359
           +                         +NSM           I G  Q+G  +EA+ LF  
Sbjct: 339 VLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKM 398

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M  ++ + D  +   +IS    ++ L+ G+ + +     G+  D  +S +L+D Y KCG 
Sbjct: 399 MMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGE 458

Query: 420 --DALALFN-------------------------------EMRNTGVKPTIITFTAILSA 446
             D+L +FN                               +MR   V P + TF   L  
Sbjct: 459 VGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPM 518

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C      + G++    +  ++  + E++  + +++++++ GCL  +  + E+M    DV 
Sbjct: 519 CASLAAKRLGKEIHCCL-LRFGYESELQIGNALIEMYSKCGCLESSFRVFERMS-RRDVV 576

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPE----NACAYIQLSSIFATSGEWEK 557
            W+ ++    A+G  G G K  E  ++++      ++  +I L    + SG  EK
Sbjct: 577 TWTGMI---YAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEK 628



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 104/250 (41%), Gaps = 63/250 (25%)

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A +  A SS   L   +++H     +G+      +  L+D YS    P+ +  +F     
Sbjct: 8   AFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFR---- 63

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                                     R  P K++  WNS+I   S+NG   +AL+ +  +
Sbjct: 64  --------------------------RVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKL 97

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
            +  +  DK++  SVI ACA +   E+G+ V+ ++  +G +SD  +  +LVD Y + G  
Sbjct: 98  RESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLL 157

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +AL +++E+RN+ + P   T +++L A 
Sbjct: 158 SRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAF 217

Query: 448 DHCGLVKEGQ 457
            +  +VK+GQ
Sbjct: 218 ANLLVVKQGQ 227



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 17/198 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L  C +  +  +GK++H   L+ G   S L I N L++MY +CG    +  +F+ M RR+
Sbjct: 516 LPMCASLAAKRLGKEIHCCLLRFG-YESELQIGNALIEMYSKCGCLESSFRVFERMSRRD 574

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI---------SGFAKADLAALE 122
             +W  MI  +   G  EK+L+ F  M +      +++          SG  +  LA  E
Sbjct: 575 VVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFE 634

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGY 181
              ++ +H  ++ +       + +V+L  +    + A + +  M  EPD    ++++   
Sbjct: 635 ---KMKTHYKIDPMIEHY---ACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRAC 688

Query: 182 ANCGKMNDARRVFDRTTD 199
              G M  A RV  R  +
Sbjct: 689 RTSGDMETAERVSRRIIE 706


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  268 bits (685), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 181/606 (29%), Positives = 294/606 (48%), Gaps = 47/606 (7%)

Query: 17  THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD------ALLLFDEMPRR 70
           T  S+    +LH   +  G L    P A+ LL   + C  PTD      AL LFD MP  
Sbjct: 8   TPRSVRQAAELHAVLVASGRLLHP-PSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCS 66

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
                 A+   F      E  L L+  M +     + F+++ L    A+     L   + 
Sbjct: 67  TFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVL-LCQM 125

Query: 127 IHSHILVNGLDFDSVLGSS-LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +H+      L     L S+ ++++Y + G    A +  + +   D    + +ISG A  G
Sbjct: 126 LHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLG 185

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++DA  +   +   + + W  +ISGY       EA+  F+ M  +G+  D  T+  +LS
Sbjct: 186 LLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLS 245

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTI 304
           AC+ L  L  G+ +H    + G++    +  AL+D Y+K G    A ++F  L +     
Sbjct: 246 ACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQ 305

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N MI  Y   G ++ A+++F  M ++ L+++NS+I G    G   EAL LF  M + D
Sbjct: 306 SWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHD 365

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           LR D F++ S+++ACA++ +L  G  + A +    ++ D  + T+L+D Y KCG      
Sbjct: 366 LRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEAS 425

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                        AL  F  M+  G +P  +T+ AIL+AC H  
Sbjct: 426 LVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSC 485

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           L+ EG+ +F+ M+  ++I P IEHY CM+DL  R+G L+EA++L+  MP + +  +W+SI
Sbjct: 486 LLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASI 545

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  H D  L R  AE +++L+P+    Y+QL +I+  S +WE +S IR +M E+ V 
Sbjct: 546 LSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVK 605

Query: 572 KLPGCS 577
           K  G S
Sbjct: 606 KAAGYS 611



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 198/431 (45%), Gaps = 36/431 (8%)

Query: 175 SALISGYANCGKMND------ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           S L++   NC    D      A  +FDR   ++ +   ++ + + +++     L+L+ +M
Sbjct: 35  SHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRM 94

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI--VASALLDTYSKRG 286
           RR GV  DA T   +   C+         Q+   AC   ++   +  V++ ++  Y + G
Sbjct: 95  RRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELG 154

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
           +  DA + F ++ V D +   T+I+  +  G ++DA  + R  P +++ISW  +I G S+
Sbjct: 155 LAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSR 214

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
            G   EA+D F +M    +  D+ ++  ++SACA +  L  G  +   V   G+     +
Sbjct: 215 AGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKL 274

Query: 407 STSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
             +L+D Y KCG    A  +F+ +   G +P   ++ A++      G V   +  FD M+
Sbjct: 275 VVALIDMYAKCGDIGRAWEVFDAL-GRGRRPQ--SWNAMIDGYCKLGHVDVARYLFDQME 331

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDK 521
                D ++  ++ ++  +   G L EA+ L  QM      AD     S+L  C + G  
Sbjct: 332 -----DRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGAL 386

Query: 522 GLGRK----VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
             GR     + +R++E+D     A + +   +   G  E++SL+   M  + V      +
Sbjct: 387 PQGRALHACIEQRLVEVDIYLGTALLDM---YLKCGRVEEASLVFQAMSVRDVH-----T 438

Query: 578 WA---DGIAFN 585
           W+    G+AFN
Sbjct: 439 WSAMIAGLAFN 449


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  268 bits (684), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 174/603 (28%), Positives = 285/603 (47%), Gaps = 97/603 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++C    S+  G+ LH   ++ GI N ++ + N +LQMY  C +  DA  LFDEM   
Sbjct: 89  LFEACRELRSLSHGRLLHDR-MRMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSEL 147

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           N  S   MI  + + G  +K++ LF+ M    D   + + +   K+  +  AL++G+QIH
Sbjct: 148 NAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIH 207

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           +H++  GL  ++ + + +VN+Y KC                               G + 
Sbjct: 208 AHVIRAGLCSNTSIETGIVNMYVKC-------------------------------GWLV 236

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            A+RVFD+      V    ++ GY       +AL LF  +   GV  D+   + VL AC+
Sbjct: 237 GAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACA 296

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           SL  L  GKQ+H    K+G+  +V V + L+D Y K      AC+ F E++  + +  + 
Sbjct: 297 SLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSA 356

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +I+ Y    + E+A   F     KSL S N+ I                         ++
Sbjct: 357 IISGYCQMSQFEEAVKTF-----KSLRSKNASI-------------------------LN 386

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
            F+  S+  AC+ ++   +G QV A      L   Q   ++L+  Y KCG          
Sbjct: 387 SFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFE 446

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +AL LF +M + G+KP  +TF A+L+AC H GLV++
Sbjct: 447 SMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQ 506

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G+   D M  +Y++ P I+HY CM+D++AR+G L+EA+  ++ MPFE D   W   L GC
Sbjct: 507 GKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGC 566

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             H +  LG    E + +LDPE+   Y+   +++  +G+WE+++ +  +M E+ + K   
Sbjct: 567 WTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELS 626

Query: 576 CSW 578
           CSW
Sbjct: 627 CSW 629



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 127/328 (38%), Gaps = 66/328 (20%)

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           EA     +M + GV   + +   +  AC  L  L HG+ +H    ++G+ +         
Sbjct: 66  EAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRM-RMGIEN--------- 115

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
                   PS              +L N ++ +Y  C  +EDA  +F  M   + +S  +
Sbjct: 116 --------PS-------------VLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTT 154

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           MI   ++ G   +A+ LF  M     +       +++ +  N  +L+ G Q+ A V   G
Sbjct: 155 MISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAG 214

Query: 400 LDSDQIISTSLVDFYCKCGY---------------------------------DALALFN 426
           L S+  I T +V+ Y KCG+                                 DAL LF 
Sbjct: 215 LCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFV 274

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           ++   GV+     F+ +L AC     +  G K   A   +  ++ E+   + +VD + + 
Sbjct: 275 DLVTEGVEWDSFVFSVVLKACASLEELNLG-KQIHACVAKLGLESEVSVGTPLVDFYIKC 333

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRG 514
                A    +++    DV  WS+I+ G
Sbjct: 334 SSFESACRAFQEIREPNDVS-WSAIISG 360



 Score = 38.9 bits (89), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N  +V LS++    EA +    M+K  + +  +S   +  AC  + SL  G  +  R+ +
Sbjct: 52  NLHLVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRM 111

Query: 398 IGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
              +   ++   ++  YC+C    DA  LF+EM         ++ T ++SA    G++ +
Sbjct: 112 GIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNA----VSRTTMISAYAEQGILDK 167

Query: 456 GQKWFDAM 463
               F  M
Sbjct: 168 AVGLFSGM 175


>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 760

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 184/653 (28%), Positives = 306/653 (46%), Gaps = 114/653 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDE 66
           LA +L +C+      +G + H   +K G L+  + + N LL MY +CG   D  + +F+ 
Sbjct: 127 LASVLSACSKVQDGVIGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFMVDYGVRVFES 185

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------NDFSWNMLISGF-AK 115
           +   N  S+  +I G  +     +++ +F +M +K          N  S ++   G  + 
Sbjct: 186 LSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREGCDSL 245

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           +++     GKQIHS  L  G   +  L +SL+ +Y K  D N A  +   M E +    +
Sbjct: 246 SEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWN 305

Query: 176 ALISGYAN-----------------------------------CGKMNDARRVFDRTTDT 200
            +I+G+                                      G +   RR+F+     
Sbjct: 306 IMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRIFNTIPQP 365

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           S   WN+M+SGY +     EA+  F +M+   +  D +TL+ +LS+C+ L FLE GKQ+H
Sbjct: 366 SVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCARLRFLEGGKQIH 425

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G A +    +D  + S L                               I VYS C ++E
Sbjct: 426 GVAIRTETSEDSHIVSGL-------------------------------IAVYSECEKME 454

Query: 321 DAKHIFRTMPNKSLIS-WNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISA 378
             + IF    N+  I+ WNSMI GL +N    +AL LF  M++  + + ++ + A V+ +
Sbjct: 455 ICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLPNETTYAIVLGS 514

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------- 419
           C+ + SL  G Q   +V   G  SD  + T++ D YCKCG                    
Sbjct: 515 CSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIESARQFFDTVSRKNTVIW 574

Query: 420 --------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         +A+ L+ EM + G KP  ITF ++L+AC H GLV  G +   +M+ 
Sbjct: 575 NEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLTACSHSGLVDTGLEILSSMQR 634

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
            + I+PE++HY C+VD   RAG L +A  L E  P+++   +W  +L  C  +GD  L R
Sbjct: 635 DHGIEPELDHYICIVDCLGRAGRLEDAETLAEATPYKSSSVLWEILLSSCRVYGDVSLAR 694

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +VAE+++ LDP+N+ AY+ LS+ +++  +W+ ++ ++++M +  V K PG SW
Sbjct: 695 RVAEKLMHLDPQNSAAYVLLSNTYSSVRQWDDAAALQELMNKNRVHKTPGHSW 747



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 151/572 (26%), Positives = 254/572 (44%), Gaps = 93/572 (16%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           LNS   + NRLL +Y+  G+   A  LFDEM  R+ +SWNA +    K+G  E++ ++F+
Sbjct: 23  LNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVFD 82

Query: 97  VMPQKNDFSWNMLIS-----GFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
            MP+++  SWN +IS     GF +  L    YG+ +    L +     SVL +      G
Sbjct: 83  GMPERDVVSWNNMISVLVRKGFEEKALDV--YGRMVGDGFLPSRFTLASVLSACSKVQDG 140

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND-ARRVFDRTTDTSSVMWNSMIS 210
             G        +    + + F  +AL+S YA CG M D   RVF+  ++ + V + ++IS
Sbjct: 141 VIG-MRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVIS 199

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS------ACSSLGFLEH---GKQVHG 261
           G    N+  EA+ +F  M   GV  D   L+++LS       C SL  +     GKQ+H 
Sbjct: 200 GLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREGCDSLSEIYGNVLGKQIHS 259

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM------------ 309
            A + G + ++ + ++LL+ Y+K    + A  +F+E+   + +  N M            
Sbjct: 260 LALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRSDK 319

Query: 310 --------------------ITVYSSC---GRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
                               I++  +C   G +E  + IF T+P  S+ +WN+M+ G S 
Sbjct: 320 SIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRIFNTIPQPSVSAWNAMLSGYSN 379

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
                EA++ F  M   +L+ D+ +L+ ++S+CA +  LE G+Q+           D  I
Sbjct: 380 YEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSEDSHI 439

Query: 407 STSLVDFY--------CKCGYD--------------------------ALALFNEMRNTG 432
            + L+  Y        C+C +D                          AL LF  M  T 
Sbjct: 440 VSGLIAVYSECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTS 499

Query: 433 V-KPTIITFTAILSACDH-CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           V  P   T+  +L +C   C LV   Q     +K  Y  D  +E  + + D++ + G + 
Sbjct: 500 VLLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVE--TAVTDMYCKCGEIE 557

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
            A    + +  +  V +W+ ++ G  AH  +G
Sbjct: 558 SARQFFDTVSRKNTV-IWNEMIHG-YAHNGRG 587



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 183/418 (43%), Gaps = 64/418 (15%)

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           GL+ D+ L + L++LY + GD + A ++ + M   D +  +A ++     G + +A  VF
Sbjct: 22  GLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVF 81

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           D   +   V WN+MIS  +    + +AL ++ +M  +G L    TLASVLSACS +    
Sbjct: 82  DGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQDGV 141

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD-ACKLFSELKVYDTILLNTMITVY 313
            G + HG A K G+  ++ V +ALL  Y+K G   D   ++F  L   + +   T+I+  
Sbjct: 142 IGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVISGL 201

Query: 314 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
           +   ++ +A H+FR M  K +                   +D  C  N L + + +    
Sbjct: 202 ARENKVLEAVHMFRLMCEKGV------------------QVDCVCLSNILSISVPREGCD 243

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK----------------- 416
           S+     N+    LG+Q+ +     G   +  ++ SL++ Y K                 
Sbjct: 244 SLSEIYGNV----LGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEV 299

Query: 417 ---------CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                     G+        ++     MR++G +P  +T  +IL AC   G V+ G++ F
Sbjct: 300 NVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRIF 359

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE---ADVGMWSSILRGC 515
           + +       P +  ++ M+  ++      EA+N   QM F+    D    S IL  C
Sbjct: 360 NTIP-----QPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSC 412



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 20/200 (10%)

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
           + G+  D  + + LLD Y + G    A KLF E+ + D    N  +T     G +E+A  
Sbjct: 20  RTGLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACE 79

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
           +F  MP + ++SWN+MI  L + G   +ALD++  M        +F+LASV+SAC+ +  
Sbjct: 80  VFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQD 139

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVK-------PTI 437
             +G +        GLD +  +  +L+  Y KCG+        M + GV+       P  
Sbjct: 140 GVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGF--------MVDYGVRVFESLSEPNE 191

Query: 438 ITFTAILSACDHCGLVKEGQ 457
           ++FT ++S     GL +E +
Sbjct: 192 VSFTTVIS-----GLARENK 206


>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 163/574 (28%), Positives = 271/574 (47%), Gaps = 129/574 (22%)

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL 118
           +AL LFD M  RN  SWNAM+ GF++ G  E++++ F  MP+++  S + L++G  +   
Sbjct: 3   EALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQ--- 59

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD------F 172
                                              G+ + A ++L   +  DD       
Sbjct: 60  ----------------------------------NGELDEAKRILLTSRRQDDDKGDLVH 85

Query: 173 CLSALISGYANCGKMNDARRVFDRTT------------DTSSVMWNSMISGYISNNEDTE 220
             + L++GY   G+++ AR++FD+              + + V WNSMI  Y+   +   
Sbjct: 86  AYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFS 145

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           A +LF +M+                                         D I  + ++ 
Sbjct: 146 ARVLFDQMKER---------------------------------------DTISWNTMIS 166

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y +     +A  LF E+   DT+  N+MI+ ++  G +E A+ +F T+P K+L+SWNSM
Sbjct: 167 GYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSM 226

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           I G   NG    A +L+  M     + D+ +L+SV+S C+  ++L LG Q+  ++T   +
Sbjct: 227 IAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVI 286

Query: 401 DSDQIISTSLVDFYCKCGY----------------------------------DALALFN 426
             D  I+ SL+  Y +CG                                   DAL LF 
Sbjct: 287 -PDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFE 345

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
            M+   V+PT ITF ++L+AC H G VKEG+  F +M  ++ I+P IEH++ +VD+  R 
Sbjct: 346 LMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRH 405

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G L EA++LI  MPFE D  +W ++L  C  H +  L R  AE +++L+PE++  Y+ L 
Sbjct: 406 GQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLH 465

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +++A  G+W+ ++ +R +M   ++ K PG SW D
Sbjct: 466 NMYADVGQWDNATEMRMMMERNNIRKQPGYSWVD 499



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 136/262 (51%), Gaps = 13/262 (4%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y+R  +  +A +LF EMP  +  +WN+MI GF + G+ E +  LF  +PQKN  
Sbjct: 162 NTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLV 221

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SWN +I+G+        +   +++  +L+ G   D    SS++++   C  F + +  + 
Sbjct: 222 SWNSMIAGYENN--GDYKGATELYRQMLLQGEKPDRHTLSSVLSV---CSGFAALHLGMQ 276

Query: 165 MMKE------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNE 217
           + ++      PD    ++LI+ Y+ CG + +AR +FD       V+ WN+MI GY  +  
Sbjct: 277 IHQQITKTVIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGF 336

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVIVAS 276
             +AL LF  M+R  V     T  SVL+AC+  GF++ G+      AC+ G+   +   +
Sbjct: 337 AADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFA 396

Query: 277 ALLDTYSKRGMPSDACKLFSEL 298
           +L+D   + G   +A  L + +
Sbjct: 397 SLVDIVGRHGQLEEAMDLINSM 418



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L  C+   ++H+G Q+H    K  I +  +PI N L+ MY RCG   +A  +FDE+
Sbjct: 258 LSSVLSVCSGFAALHLGMQIHQQITKTVIPD--IPINNSLITMYSRCGAIVEARTIFDEV 315

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGK 125
             ++   SWNAMI G+   G    +L+LF +M + K   ++   IS       A      
Sbjct: 316 KLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEG 375

Query: 126 QIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
           ++H   +      +  +   +SLV++ G+ G    A  ++N M  EPD     AL+
Sbjct: 376 RMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALL 431



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 97/219 (44%), Gaps = 22/219 (10%)

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +++A  +F +M  ++++SWN+M+ G  QNG    A++ F  M +     D  SL+++++ 
Sbjct: 1   MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPE----RDSASLSALVAG 56

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTS--LVDFYCKCG--------YDALALFNEM 428
                 L+  +++         D   ++     L+  Y + G        +D +  ++  
Sbjct: 57  LIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGG 116

Query: 429 RNTG--VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +  G   +  ++++ +++        +   +  FD MK +  I      ++ M+  + R 
Sbjct: 117 QKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTIS-----WNTMISGYVRM 171

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
             + EA  L ++MP   D   W+S++ G    G+  L R
Sbjct: 172 SDMEEAWMLFQEMP-NPDTLTWNSMISGFAQKGNLELAR 209


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 177/591 (29%), Positives = 284/591 (48%), Gaps = 102/591 (17%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH   LK G+L+S + + N LL  Y + G    A  +F EMP R+  ++NAM+ G  K G
Sbjct: 161 LHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEG 220

Query: 87  HKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVL 142
              ++L LF  M +K      F+++ +++      +  L  G+Q+H  ++      +  +
Sbjct: 221 SHAEALDLFAAMRRKGLAATRFTFSTVLT--VATGVGDLCLGRQVHG-LVARATSSNVFV 277

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
            +SL++ Y KC   +   ++ + M E D+                               
Sbjct: 278 NNSLLDFYSKCDCLDEMKKLFHEMIERDN------------------------------- 306

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V +N MI+GY  N   +  L LF +M+       A   AS+LS   S+  +  GKQ+H  
Sbjct: 307 VSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQ 366

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
              +G+  + +V +AL+D YSK                               CG ++ A
Sbjct: 367 LVLLGLSSEDLVGNALIDMYSK-------------------------------CGMLDAA 395

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
           K  F    +K+ +SW +MI G  QNG   EAL LFC M +  L  D+ + +S I A +N+
Sbjct: 396 KTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNL 455

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM--RNT------- 431
           + + LG Q+ + +   G  S     ++L+D Y KCG   +AL  F+EM  RN+       
Sbjct: 456 AMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVI 515

Query: 432 ----------------------GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                                 G KP  +TF ++LSAC H GL +E  K+F+ M+++Y I
Sbjct: 516 SAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGI 575

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P  EHYSC++D   R G  ++   ++ +MPFE D  +WSSIL  C  HG++ L R  AE
Sbjct: 576 SPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAE 635

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++  +   +A  Y+ LS+IFA +G+WE ++ ++ IMR++ + K  G SW +
Sbjct: 636 KLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVE 686



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 228/532 (42%), Gaps = 78/532 (14%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRR-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K 101
           N LL   +  G    A  LFD+MP R N FS N M+ G+ + G    +  LF   P   +
Sbjct: 38  NLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLR 97

Query: 102 NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
           +  +W ++I  FA A  A       +   +L  G+  D V  ++++NL    G   +A  
Sbjct: 98  DAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAII 157

Query: 162 VLNM--------MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           + ++        +   +    + L+  Y   G +  ARRVF       SV +N+M+ G  
Sbjct: 158 IASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCS 217

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
                 EAL LF  MRR G+     T ++VL+  + +G L  G+QVHG   +     +V 
Sbjct: 218 KEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVAR-ATSSNVF 276

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
           V ++LLD YSK       C    E+K                         +F  M  + 
Sbjct: 277 VNNSLLDFYSK-------CDCLDEMK------------------------KLFHEMIERD 305

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
            +S+N MI G + N      L LF  M  L         AS++S   ++  + +G+Q+ A
Sbjct: 306 NVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHA 365

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCGY---------------------------------D 420
           ++ ++GL S+ ++  +L+D Y KCG                                  +
Sbjct: 366 QLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEE 425

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           AL LF  MR  G+ P   TF++ + A  +  ++  G++    +    H+   +   S ++
Sbjct: 426 ALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMS-SVFSGSALL 484

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           D++ + GCL+EA+   ++MP E +   W++++     +G      K+ E M+
Sbjct: 485 DMYTKCGCLDEALQTFDEMP-ERNSISWNAVISAYAHYGQAKNAIKMFEGML 535



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 160/341 (46%), Gaps = 24/341 (7%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL    +   I +GKQ+H   +  G+ +  L + N L+ MY +CG    A   F    
Sbjct: 345 ASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDL-VGNALIDMYSKCGMLDAAKTNFINKN 403

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALE 122
            +   SW AMI G ++ G +E++LQLF  M      P +  FS  +     A ++LA + 
Sbjct: 404 DKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIK----ASSNLAMIG 459

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+Q+HS+++ +G       GS+L+++Y KCG  + A Q  + M E +    +A+IS YA
Sbjct: 460 LGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYA 519

Query: 183 NCGKMNDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDA 237
           + G+  +A ++F+          SV + S++S    N    E +  F  M    G+    
Sbjct: 520 HYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWK 579

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS----DACK 293
              + V+     +G  +  +++ G   ++   DD I+ S++L +    G        A K
Sbjct: 580 EHYSCVIDTLGRVGRFDKVQEMLG---EMPFEDDPIIWSSILHSCRTHGNQDLARVAAEK 636

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
           LFS +   D      +  +++  G+ EDA  + + M ++ L
Sbjct: 637 LFS-MGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGL 676


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 169/606 (27%), Positives = 293/606 (48%), Gaps = 100/606 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C T      G  +H   +K G LN+ + +AN L+ MY + G+   ++ +FD M
Sbjct: 223 LVSVVPACGTEQEEKFGLSIHALAVKVG-LNTMVNLANALVDMYGKFGDVEASMQVFDGM 281

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             +N  SWN+ I  F+  G     L++F  M + N    ++ +S    A  +L + + G+
Sbjct: 282 LEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGR 341

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           ++H + +   +D D  + +SLV++Y                               A  G
Sbjct: 342 EVHGYSIKRAMDLDIFVANSLVDMY-------------------------------AKFG 370

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            +  A  +F++  D + V WN+MI+  + N  +TEA  L   M+++G   ++ TL +VL 
Sbjct: 371 SLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLP 430

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ +  L+ GKQ+H  + + G++ D+ +++AL+D                         
Sbjct: 431 ACARMASLKMGKQIHAWSIRRGLMFDLFISNALID------------------------- 465

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                 +YS CG++  A++IF     K  +S+N++I+G SQ+    E+L LF  M  + +
Sbjct: 466 ------MYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGI 518

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK--------- 416
             D  S    +SAC N+S  + G+++   +    L     +S SL+D Y K         
Sbjct: 519 DYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASK 578

Query: 417 -----------------CGYD-------ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                             GY        A  LF  M+  G+    +++ A+L+AC H GL
Sbjct: 579 IFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGL 638

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V +G+K+F  M  Q +I+P+  HY+CMVDL  RAG L++   +I  MPF A+  +W ++L
Sbjct: 639 VDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALL 697

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  HG+  L +  AE + EL PE++  Y  + +++A +G W +++ IR +M+ + V K
Sbjct: 698 GACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQK 757

Query: 573 LPGCSW 578
            P  SW
Sbjct: 758 NPAYSW 763



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 140/543 (25%), Positives = 243/543 (44%), Gaps = 101/543 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G +LH   L++G L       N L+  Y  CG   DA  +FDEMP R+  SWN+++  F+
Sbjct: 138 GLELHASALRRGHLADVF-TGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFL 196

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNM--LISGFAKADLAALE-YGKQIHSHILVNGLDFDS 140
             G    + +    M  ++ F  N+  L+S          E +G  IH+  +  GL+   
Sbjct: 197 VNGMFHDARRALVSM-MRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMV 255

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            L ++LV++YGK GD  ++ QV + M E ++   ++ I  + N G   D  R        
Sbjct: 256 NLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLR-------- 307

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
                                  +F KM  + V+  + TL+S+L A   LG  + G++VH
Sbjct: 308 -----------------------MFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVH 344

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G++ K  +  D+ VA++L+D Y+K G    A  +F ++K                     
Sbjct: 345 GYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMK--------------------- 383

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
                     +++++SWN+MI  L QNG+  EA  L  +M K     +  +L +V+ ACA
Sbjct: 384 ----------DRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACA 433

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
            ++SL++G+Q+ A     GL  D  IS +L+D Y KCG                      
Sbjct: 434 RMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSEKDDVSYNTL 493

Query: 419 ----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468
                     +++L LF +MR+ G+    ++F   LSAC +  + K G++    +  +  
Sbjct: 494 ILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKE-IHCVLVRRL 552

Query: 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA 528
           +       + ++DL+ + G L  A  +  ++  + DV  W++++ G   HG   +  ++ 
Sbjct: 553 LSGHPFLSNSLLDLYTKGGMLVTASKIFNKIT-KKDVASWNTMILGYGMHGQIDIAFELF 611

Query: 529 ERM 531
           E M
Sbjct: 612 ELM 614



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 117/513 (22%), Positives = 211/513 (41%), Gaps = 102/513 (19%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR--NCFSWNAMIEGF 82
           ++ H   L  G L ++LP+A  LL  Y    +   A L+    P R  + F WN++    
Sbjct: 33  RRAHAASLVSGALATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRAL 92

Query: 83  MKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
                  ++L+++N+M     + +D ++   +   A A  +A + G ++H+  L  G   
Sbjct: 93  SSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLA 152

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D   G++LV  Y  CG    A +V + M E D    ++L+S +   G  +DARR      
Sbjct: 153 DVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARR------ 206

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
                   +++S                 M R+G   + ++L SV+ AC +    + G  
Sbjct: 207 --------ALVS-----------------MMRSGFPLNVASLVSVVPACGTEQEEKFGLS 241

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +H  A KVG+   V +A+AL+D Y K                                G 
Sbjct: 242 IHALAVKVGLNTMVNLANALVDMYGK-------------------------------FGD 270

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +E +  +F  M  ++ +SWNS I      G   + L +F  M++ ++     +L+S++ A
Sbjct: 271 VEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPA 330

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------- 418
              + S +LG +V        +D D  ++ SLVD Y K G                    
Sbjct: 331 LVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSW 390

Query: 419 -------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         +A  L  +M+ +G  P  IT   +L AC     +K G++   A   
Sbjct: 391 NAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQ-IHAWSI 449

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           +  +  ++   + ++D++++ G L+ A N+ E+
Sbjct: 450 RRGLMFDLFISNALIDMYSKCGQLSLARNIFER 482


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 184/658 (27%), Positives = 304/658 (46%), Gaps = 84/658 (12%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  +  ++ LL SC    S+  GKQLH H +  G  N  L +  +L+  Y       DA 
Sbjct: 38  DAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGFENH-LVLVPKLVTFYSSFSLLADAH 96

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
            +       N   WN +I  ++  G   ++L  +  M  K     N       KA  +  
Sbjct: 97  TITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKL 156

Query: 120 ALEYGKQIHSHI-LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            L++G+++H  I    G  ++  + +SLV++YGK G+ ++A ++ N M E D    + +I
Sbjct: 157 DLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGII 216

Query: 179 SGYANCGKMNDARRVFDRT----TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           S YA+ G   +A  +F+       + + + WN++  G +       AL L  +MRR  + 
Sbjct: 217 SNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDID 276

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D   +   L ACS +G ++ G  +H  A +                             
Sbjct: 277 LDPVAMIIGLGACSHIGAIKLGTVIHASAIR----------------------------- 307

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
            S    +D +  N +IT+YS C  +  A  +F+++  KSL +WNSM+ G +      EA 
Sbjct: 308 -SCFDGFDNVR-NALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEAS 365

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDF 413
            LF  M    +  +  ++AS++  CA +++L+ G++    +    G +   ++  SLV+ 
Sbjct: 366 FLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEM 425

Query: 414 YCKCG--------YD-------------------------ALALFNEMRNTGVKPTIITF 440
           Y + G        +D                         AL LF+EM    +KP  +T 
Sbjct: 426 YARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTM 485

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
            A+LSAC H GLV EG   F+ M   Y I P +EH+SCMVDLF RAG LN+A  +I  MP
Sbjct: 486 VAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMP 545

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
           +     MW++++  C  HG+  +G   AE+++E+ PEN   Y+ ++++ A +G W K + 
Sbjct: 546 YRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAE 605

Query: 561 IRDIMREKHVGKLPGCSWAD-GIAFNCWFLDTMFLQLANFDEIKQHQSADFCDYIHGF 617
           +R  MR+  V K PGC+W D G  F+ + +           +  +H S D  + + G 
Sbjct: 606 VRTYMRDLGVRKAPGCTWVDVGSGFSPFVV----------GDTSKHNSNDLYELLEGL 653


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 170/601 (28%), Positives = 290/601 (48%), Gaps = 94/601 (15%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C+    +  GK +H   +  G+ N    ++N L  MY  CG   +A  +FD     +  S
Sbjct: 113 CSRALDLRTGKAVHAMTVLDGLGNGVF-LSNSLASMYASCGEMGEARRVFDAAEEHDDVS 171

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSH 130
           WN+++ G+++ G +E++L++F++M       N F+   +I   A          + +H  
Sbjct: 172 WNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGC 231

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           ++  GLD D  L S+++++Y K G   +A  +   + +P+    +A+I+G+         
Sbjct: 232 VVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCR------- 284

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                   D ++V                EAL L+ +M+  G+     T +S+L AC+  
Sbjct: 285 --------DEAAV----------GKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLA 326

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
           G    GKQ+HG   K    DD  + SAL+D YS  G   D  + F               
Sbjct: 327 GEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCF--------------- 371

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                           R++P + +++W SMI G  QN    +AL LF       L+ D F
Sbjct: 372 ----------------RSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLF 415

Query: 371 SLASVISACANISSLELGEQV--------FARVTIIG----------------------L 400
           +++SV++ACA+++    GEQ+        F R T +G                      +
Sbjct: 416 TMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEM 475

Query: 401 DSDQIIS-TSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
           +S  ++S ++++  + +  C  DAL +FNEM N  V P  +TF  +L+AC H GLV +G 
Sbjct: 476 ESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGL 535

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           ++++ MK +Y + P I+H +C+VDL  RAG L +A   I    F  D  +W S+L  C  
Sbjct: 536 RYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRI 595

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           HGD   G+ VA+++++L+P ++ +Y+ L +++  +GE   +S  RD+M+E+ V K PG S
Sbjct: 596 HGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLS 655

Query: 578 W 578
           W
Sbjct: 656 W 656



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 133/557 (23%), Positives = 239/557 (42%), Gaps = 118/557 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR--CGNPTDALLLFDEMP 68
           LL+SC      HV   +H H + +    ++L + N LL  Y R   G P  A  L DEMP
Sbjct: 8   LLRSCTA--LPHVAA-VHAH-IARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMP 63

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISGFAKADLAALEY 123
           RRN  S+N +I  + + G   ++L+ F         + + F++   ++  ++A    L  
Sbjct: 64  RRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRA--LDLRT 121

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK +H+  +++GL     L +SL ++Y                               A+
Sbjct: 122 GKAVHAMTVLDGLGNGVFLSNSLASMY-------------------------------AS 150

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG+M +ARRVFD   +   V WNS++SGY+      E L +F  M  +G+  ++  L S+
Sbjct: 151 CGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSI 210

Query: 244 LSACSSLGFLEH--GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           +  C+S   +     + VHG   K G+  D+ +ASA++D Y+KRG  ++A  LF      
Sbjct: 211 IKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALF------ 264

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI------EALD 355
                                    +++P+ ++I +N+MI G  ++ + +      EAL 
Sbjct: 265 -------------------------KSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALS 299

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           L+  M    ++  +F+ +S++ AC        G+Q+  +V       D  I ++L+D Y 
Sbjct: 300 LYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYS 359

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
             G                                   AL LF E    G+KP + T ++
Sbjct: 360 DSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSS 419

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +++AC    + + G++    +  +Y  +      +  + + AR+G ++      ++M   
Sbjct: 420 VMNACASLAVARTGEQ-IQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEME-S 477

Query: 503 ADVGMWSSILRGCVAHG 519
            DV  WS+++     HG
Sbjct: 478 RDVVSWSAVISSHAQHG 494



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 143/358 (39%), Gaps = 82/358 (22%)

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM--PSDACKLFSELKV 300
           +L +C++L    H   VH H  +      + + ++LL  Y + G+  P  A +L  E+  
Sbjct: 8   LLRSCTAL---PHVAAVHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPR 64

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + +  N +I+ YS  G           +P ++L ++                       
Sbjct: 65  RNAVSYNLLISSYSRAG-----------LPGRALETFARA-------------------R 94

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD 420
               LR+D+F+ A+ ++AC+    L  G+ V A   + GL +   +S SL   Y  CG  
Sbjct: 95  AAAGLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCG-- 152

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM-----KWQ--------- 466
            +     + +   +   +++ ++LS     G  +E  K F  M      W          
Sbjct: 153 EMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIK 212

Query: 467 ---------YHI-------------DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
                     HI             D ++   S M+D++A+ G L  AV L + +P + +
Sbjct: 213 CCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVP-DPN 271

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
           V ++++++ G     +  +G++V+   + L       Y ++ S      E+  SS++R
Sbjct: 272 VIVFNAMIAG-FCRDEAAVGKEVSREALSL-------YSEMQSRGMQPSEFTFSSILR 321


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/542 (29%), Positives = 273/542 (50%), Gaps = 78/542 (14%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS 129
           ++ +++N  I    + G+   + Q+F+ MP ++  SWN +I+G                 
Sbjct: 45  QDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITG----------------- 87

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
                               Y K G F+ + ++  +M   +    +++I+G     ++++
Sbjct: 88  --------------------YWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDE 127

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A + F      ++  WN+MISG +  +   EA  LF +M R  V+    +  +++   + 
Sbjct: 128 AWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVI----SYTAMVDGYAK 183

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           +G +E  + +     +  V+   ++ S     Y + G   +A  LF ++   + + +  M
Sbjct: 184 IGEIEQARALFNCMPQKNVVSWTVMISG----YVENGKFDEAENLFEQMPDKNIVAMTAM 239

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT Y   G+ + AK +F  +P + L SWN+MI G +QNGS  EAL L   M K+ ++ D 
Sbjct: 240 ITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDH 299

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            +L SV++AC++++SL+ G +    V   G +S   I  +L+  YCKCG           
Sbjct: 300 STLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQ 359

Query: 419 ---------------------YD-ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                YD ALA F EMR+  V+P  ITF ++LSAC H G V E 
Sbjct: 360 IDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHES 419

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             WF++M   Y I    EH++C+VD+ +R G + +A  +I++MPFEAD G+W ++L  C 
Sbjct: 420 LNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACH 479

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  LG   A++++EL+P+N+ AY+ LS+I+A +G W + + +R +MRE+ V K P  
Sbjct: 480 VHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAY 539

Query: 577 SW 578
           SW
Sbjct: 540 SW 541



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 156/337 (46%), Gaps = 68/337 (20%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++   +R     +A  LF+EMPRRN  S+ AM++G+ K+G  E++  LFN MPQKN  
Sbjct: 144 NAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV 203

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SW ++ISG                                     Y + G F+ A  +  
Sbjct: 204 SWTVMISG-------------------------------------YVENGKFDEAENLFE 226

Query: 165 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
            M + +   ++A+I+GY   GK + A+ +FD+        WN+MI+GY  N    EAL L
Sbjct: 227 QMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKL 286

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
             +M + G+  D STL SVL+ACSSL  L+ G++ H    K G              Y  
Sbjct: 287 HSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSG--------------YES 332

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
           R                   + N +IT+Y  CG I D++  FR + +  ++SWN+MI   
Sbjct: 333 R-----------------ISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAF 375

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           +++G    AL  F  M    +  D  +  S++SAC +
Sbjct: 376 ARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGH 412



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 131/285 (45%), Gaps = 20/285 (7%)

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
           F    +Q H  + K+    DV   +  +   ++ G    A ++F E+   DT+  N++IT
Sbjct: 27  FHSFNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIIT 86

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
            Y   G  +++K +F  MP K+++SWNSMI G  ++    EA   F  M + +      S
Sbjct: 87  GYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNT----AS 142

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMR 429
             ++IS       +E   ++F  +    +    I  T++VD Y K G    A ALFN M 
Sbjct: 143 WNAMISGLVRYDRVEEASRLFEEMPRRNV----ISYTAMVDGYAKIGEIEQARALFNCMP 198

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
              V    +++T ++S     G   E +  F+ M      D  I   + M+  + + G  
Sbjct: 199 QKNV----VSWTVMISGYVENGKFDEAENLFEQMP-----DKNIVAMTAMITGYCKEGKT 249

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           ++A  L +Q+P   D+  W++++ G   +G      K+  +M+++
Sbjct: 250 DKAKILFDQIPCR-DLASWNAMITGYAQNGSGEEALKLHSQMLKM 293



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C++  S+  G++ H+  LK G   S + I N L+ MY +CG+  D+ L F ++
Sbjct: 302 LISVLTACSSLASLQEGRKTHVLVLKSG-YESRISICNALITMYCKCGSILDSELAFRQI 360

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
              +  SWNAMI  F + G  +++L  F  M
Sbjct: 361 DHPDVVSWNAMIAAFARHGFYDRALASFGEM 391


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 186/615 (30%), Positives = 290/615 (47%), Gaps = 114/615 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL+ C +  ++   +Q+H  F    I        N LL   +   + T + L+F  +
Sbjct: 24  LLSLLKQCPSTKTL---QQIHTQFTIHSIHK-----PNHLLSQSISLKDFTYSTLIFSHI 75

Query: 68  -PRRNCFSWNAMIEGFMKLGHKEK-SLQLFNVMP----QKNDFSWNMLISGFAKADLAAL 121
            P  N +++N M+       H    +L L++ M       N+F++  +    A A+L  +
Sbjct: 76  TPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVF--LACANLEEI 133

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
              +  H  +   GLD D    +S+V +Y +                             
Sbjct: 134 RMARLAHCEVFKLGLDNDHHTVNSMVTMYFR----------------------------- 164

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTL 240
             CG+   AR+VFD  T+   V WNS++SGY       EA+ +F ++R  +G   D  +L
Sbjct: 165 --CGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSL 222

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SVL AC  LG LE G+ V G   + G+  +  + SAL                      
Sbjct: 223 VSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSAL---------------------- 260

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                    I++YS CG +  ++ IF  MP++  I+WN+ I   +QNG   EA+ LF +M
Sbjct: 261 ---------ISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSM 311

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            +  +  +K +L +V+SACA+I +L+LG+Q+    T  GL  D  ++T+L+D Y KCG  
Sbjct: 312 KENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSL 371

Query: 419 -------------------------------YDALALFNEMRNTG--VKPTIITFTAILS 445
                                           +AL+LF  M + G   +P  ITF ++LS
Sbjct: 372 ESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLS 431

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV EG + FD M   + + P+IEHYSCMVDL +RAG L EA ++IE+MP + D 
Sbjct: 432 ACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDN 491

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
               ++   C    +  +G +V + ++ELDP N+  YI  S I+     W+ ++ +R +M
Sbjct: 492 VTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALM 551

Query: 566 REKHVGKLPGCSWAD 580
           RE  V K PGCSW +
Sbjct: 552 RENGVTKTPGCSWIE 566



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 201/442 (45%), Gaps = 66/442 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  +L +C     + +G+ +    +++G+ +NS   I + L+ MY +CG    +  +FD 
Sbjct: 222 LVSVLGACGELGDLELGRWVEGFVVERGMKVNSY--IGSALISMYSKCGELVSSRRIFDG 279

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALE 122
           MP R+  +WNA I  + + G  ++++ LF+ M +     N  +   ++S  A A + AL+
Sbjct: 280 MPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLS--ACASIGALD 337

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            GKQ+  +    GL  D  + ++L+++Y KCG   SA +V N M   +D   +A+IS  A
Sbjct: 338 LGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALA 397

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           + GK  +A  +F+R +D                             R N +     T  S
Sbjct: 398 SHGKAKEALSLFERMSDEGG------------------------SARPNDI-----TFVS 428

Query: 243 VLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KV 300
           +LSAC   G ++ G ++      + G++  +   S ++D  S+ G   +A  +  ++ + 
Sbjct: 429 LLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEK 488

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL--SQNGSPIEALDLFC 358
            D + L  +   +S+C R ++     R +          M++ L  S +G+ I +  ++ 
Sbjct: 489 PDNVTLGAL---HSACQRKKNVDIGERVI---------QMLLELDPSNSGNYIISSKIYE 536

Query: 359 NMNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           N+N  D   RM      + ++     S +E+G Q+   ++  GL  D I   +++D    
Sbjct: 537 NLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDL--- 593

Query: 417 CGYDALALFNEMRNTGVKPTII 438
                  L+ E++  G  P I+
Sbjct: 594 -------LYEELKKEGYVPKIV 608


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 164/526 (31%), Positives = 267/526 (50%), Gaps = 71/526 (13%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKADL---AALEYGKQIHSHILVNGLDFDSVLGSSLVNL 149
           Q+F+ +P+   F WN +I G+++ +    A L Y K   + +  +   F  +L +     
Sbjct: 74  QVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLS 133

Query: 150 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD--RTTDTSSVMWNS 207
           + + G F  A QV  +  E D F  + LI+ YA C ++  AR VF+     + + V W +
Sbjct: 134 HLQMGRFVHA-QVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTA 192

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           ++S Y  N E  EAL +F +MR+  V  D   L SVL+A + L  LE G+ +H    K+G
Sbjct: 193 IVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMG 252

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
                      L+T                    +  LL ++ T+Y+ CG++  AK +F 
Sbjct: 253 -----------LET--------------------EPDLLISLNTMYAKCGQVATAKILFD 281

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
            M + +LI WN+MI G ++NG   +A+DLF  M   D+R D  S+ S ISACA + SLE 
Sbjct: 282 KMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQ 341

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------------- 418
              +   V+      D  IS++L+D + KCG                             
Sbjct: 342 ARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGL 401

Query: 419 ----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                +A++L+  M   GV P  +TF  +L AC+H G+V+EG  +F+ M   + I+P+ +
Sbjct: 402 HGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMA-DHKINPQQQ 460

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           HY+C++DL  RAG L++A  +I+ MP +  V +W ++L  C  H    LG+  A+++  +
Sbjct: 461 HYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSI 520

Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           DP N   Y+QLS+++A +  W++ + +R  M+EK + K  GCSW +
Sbjct: 521 DPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 36/260 (13%)

Query: 1   MDTRIDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           MD + D +A   +L +      +  G+ +H   +K G L +   +   L  MY +CG   
Sbjct: 216 MDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMG-LETEPDLLISLNTMYAKCGQVA 274

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKA 116
            A +LFD+M   N   WNAMI G+ K G  + ++ LF+ M  K+     + I+    A A
Sbjct: 275 TAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACA 334

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            + +LE  + +  ++  +    D  + S+L++++ KCG    A  V +   + D    SA
Sbjct: 335 QVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSA 394

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           +I GY   G+                                 EA+ L+  M R+GV  +
Sbjct: 395 MIVGYGLHGQAR-------------------------------EAISLYRAMERDGVHPN 423

Query: 237 ASTLASVLSACSSLGFLEHG 256
             T   +L AC+  G +  G
Sbjct: 424 DVTFLGLLIACNHSGMVREG 443



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 148/370 (40%), Gaps = 56/370 (15%)

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G+  D   AS +  +  K  +     +L      +   L+  +I   SS G I  A+ +F
Sbjct: 17  GIHSDSFYASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVF 76

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             +P   +  WN++I G S+N    +AL ++  M    +  D F+   ++ AC  +S L+
Sbjct: 77  DDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQ 136

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------------------- 417
           +G  V A+V  +G ++D  +   L+  Y KC                             
Sbjct: 137 MGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSA 196

Query: 418 ------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHID 470
                   +AL +F++MR   VKP  +   ++L+A      +++G+      MK     +
Sbjct: 197 YAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETE 256

Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAER 530
           P++     +  ++A+ G +  A  L ++M    ++ +W++++ G   +G        A+ 
Sbjct: 257 PDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISGYAKNG-------FAKD 306

Query: 531 MIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLD 590
            I+L  E     ++  +I  TS           I     VG L    W D       + D
Sbjct: 307 AIDLFHEMINKDVRPDTISITSA----------ISACAQVGSLEQARWMDEYVSRSDYRD 356

Query: 591 TMFLQLANFD 600
            +F+  A  D
Sbjct: 357 DVFISSALID 366


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 172/619 (27%), Positives = 297/619 (47%), Gaps = 72/619 (11%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  +  ++ LL SC    S+  GKQLH H +  G++  +  + ++L+  Y       +A 
Sbjct: 76  DLILQSISILLVSCTKSSSLPPGKQLHGHIISSGLVEDSF-LVSKLVMFYSSLEFLPEAH 134

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLA 119
            L +        SWN +I  ++K    E ++  +  M  K     N       KA  +  
Sbjct: 135 TLVETSNLFRPCSWNILITSYVKHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQ 194

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L++G ++H  I      +   + ++L+++YG+CG+ ++A  + + M E D    +++IS
Sbjct: 195 NLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMIS 254

Query: 180 GYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
            Y++ G   +A  +F+    +  + + V WN +  G +     T+AL L  +MR  G+  
Sbjct: 255 CYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHL 314

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D   +   L ACS +G +  GK++HG   +            +L T              
Sbjct: 315 DDVAMIIGLGACSHIGAIRLGKEIHGFTIRH--------YHHMLST-------------- 352

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                    + N ++T+Y+ C  I  A  +FR   +KS I+WNSM+ GL+  G   EAL 
Sbjct: 353 ---------VQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALC 403

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQ-----------------------VF 392
           LF  +    +  D  + AS++  CA ++ L+ G +                       ++
Sbjct: 404 LFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMY 463

Query: 393 ARVTIIG---------LDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFT 441
           AR   +             D++  TSL+  Y   G    A+ LF EM+   +KP  IT  
Sbjct: 464 ARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMI 523

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           A+LSAC H GLV + +  F  M+  + + P +EHY+CM DLF R G LN+A  +I +MP+
Sbjct: 524 AVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPY 583

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
                +W++++  C  HG+  +G   AE+++E+ PE++  Y+ +++++A +G W K + I
Sbjct: 584 RPTSAIWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEI 643

Query: 562 RDIMREKHVGKLPGCSWAD 580
           R +MR+  V K+PGCSW D
Sbjct: 644 RTLMRDSGVAKIPGCSWVD 662


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 185/595 (31%), Positives = 285/595 (47%), Gaps = 77/595 (12%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL-GHK--EKSLQLFNVMPQK 101
           N ++  Y++      A  LFDEMPRR+  SWN ++ G+    G +  E+  +LF +MPQ+
Sbjct: 73  NSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSGYFSCCGSRFVEEGRRLFELMPQR 132

Query: 102 NDFSWNMLISGFAKADL--AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 159
           +  SWN +ISG+AK      AL+    +  H   N + +++V+   L+N     GD  SA
Sbjct: 133 DCVSWNTVISGYAKNGRMDQALKLFNAMPEH---NAVSYNAVITGFLLN-----GDVESA 184

Query: 160 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF------DRTTDTSSVMWNSMISGYI 213
                 M E D   L ALISG    G+++ A  +       D   D     +N++I+GY 
Sbjct: 185 VGFFRTMPEHDSTSLCALISGLVRNGELDLAAGILRECGNGDDGKDDLVHAYNTLIAGYG 244

Query: 214 SNNEDTEALLLF--------------HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
                 EA  LF               + RRN V  ++  +  V +           + V
Sbjct: 245 QRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMV 304

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
               C           + L+  Y +     +A KLF E+   D +  N++I+  +  G +
Sbjct: 305 ERDNCS---------WNTLISCYVQISNMEEASKLFREMPSPDVLSWNSIISGLAQKGDL 355

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
             AK  F  MP+K+LISWN++I G  +N     A+ LF  M     R DK +L+SVIS  
Sbjct: 356 NLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVS 415

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNE---------- 427
             +  L LG+Q+   VT   L  D  I+ SL+  Y +CG   DA  +FNE          
Sbjct: 416 TGLVDLYLGKQLHQLVTKTVL-PDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITW 474

Query: 428 ----------------------MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                                 M+   + PT ITF ++L+AC H GLV+EG + F +M  
Sbjct: 475 NAMIGGYASHGSAAEALELFKLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKSMIN 534

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
            Y I+P +EH++ +VD+  R G L EA++LI  MPF+ D  +W ++L  C  H +  L  
Sbjct: 535 DYGIEPRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALLGACRVHNNVELAL 594

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
             A+ +I L+PE++  Y+ L +++A  G+W+ +  +R +M EK+V K  G SW D
Sbjct: 595 VAADALIRLEPESSAPYVLLYNMYANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 649



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMI 79
           +++GKQLH   + K +L  + PI N L+ MY RCG   DA  +F+E+   ++  +WNAMI
Sbjct: 421 LYLGKQLH-QLVTKTVLPDS-PINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMI 478

Query: 80  EGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAAL--EYGKQIHSHILVNGL 136
            G+   G   ++L+LF +M + K   ++   IS       A L  E  +Q  S I   G+
Sbjct: 479 GGYASHGSAAEALELFKLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYGI 538

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
           +      +SLV++ G+ G    A  ++N M  +PD     AL+
Sbjct: 539 EPRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALL 581


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 175/608 (28%), Positives = 291/608 (47%), Gaps = 104/608 (17%)

Query: 12   LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
            L +C+   +   G+Q+H   +K G+ N    ++  LL MY +CG   +A  +F  +  + 
Sbjct: 778  LGACSQSENSAFGRQIHCDVVKMGLDNDPY-VSTSLLSMYSKCGMVGEAETVFSCVVDKR 836

Query: 72   CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQI 127
               WNAM+  +++  +   +L+LF  M QK    + F+ + +IS  +   L   +YGK +
Sbjct: 837  LEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGL--YDYGKSV 894

Query: 128  HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
            H+ +    +     + S+L+ LY                               + CG  
Sbjct: 895  HAELFKRPIQSTPAIESALLTLY-------------------------------SKCGCD 923

Query: 188  NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN--GVLEDASTLASVLS 245
             DA  VF    +   V W S+ISG   N +  EAL +F  M+ +   +  D+  + SV++
Sbjct: 924  TDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVIN 983

Query: 246  ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            AC+ L  L  G QVHG   K G + +V V S+L+D YSK                     
Sbjct: 984  ACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSK--------------------- 1022

Query: 306  LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                      CG  E A  +F +M  +++++WNSMI   S+N  P  +++LF  M    +
Sbjct: 1023 ----------CGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGI 1072

Query: 366  RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD----- 420
              D  S+ SV+ A ++ +SL  G+ +      +G+ SD  +  +L+D Y KCG+      
Sbjct: 1073 FPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAEN 1132

Query: 421  ----------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                        AL+LF+E++  G  P  +TF +++SAC+H G 
Sbjct: 1133 IFKKMQHKSLITWNLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGF 1192

Query: 453  VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
            V+EG+ +F+ MK  Y I+P++EHY+ MVDL  RAG L EA + I+ MP EAD  +W  +L
Sbjct: 1193 VEEGKNFFEIMKQDYGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLL 1252

Query: 513  RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
                 H +  LG   AE+++ ++PE    Y+QL +++  +G   +++ +   M+E+ + K
Sbjct: 1253 SASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGEMKERGLQK 1312

Query: 573  LPGCSWAD 580
             PGCSW +
Sbjct: 1313 QPGCSWIE 1320



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 143/538 (26%), Positives = 237/538 (44%), Gaps = 109/538 (20%)

Query: 24   GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
            GKQ+H + L+  +   +  +   L+ MY + G  TDA  +F E+  + N   WN MI GF
Sbjct: 688  GKQIHGYMLRNSLDGDSF-LKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGF 746

Query: 83   MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE-----YGKQIHSHILVNGLD 137
                  E SL+L+ ++ + N  S  ++ + F  A  A  +     +G+QIH  ++  GLD
Sbjct: 747  GGSEICESSLELY-MLAKSN--SVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLD 803

Query: 138  FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
             D  + +SL+++                               Y+ CG + +A  VF   
Sbjct: 804  NDPYVSTSLLSM-------------------------------YSKCGMVGEAETVFSCV 832

Query: 198  TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
             D    +WN+M++ Y+ N+    AL LF  MR+  VL D+ TL++V+S CS  G  ++GK
Sbjct: 833  VDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGK 892

Query: 258  QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
             VH    K  +     + SALL  YSK                               CG
Sbjct: 893  SVHAELFKRPIQSTPAIESALLTLYSK-------------------------------CG 921

Query: 318  RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASV 375
               DA  +F++M  K +++W S+I GL +NG   EAL +F +M   D  L+ D   + SV
Sbjct: 922  CDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSV 981

Query: 376  ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA------------ 423
            I+ACA + +L  G QV   +   G   +  + +SL+D Y KCG   +A            
Sbjct: 982  INACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENI 1041

Query: 424  ---------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                                 LFN M + G+ P  ++ T++L A      + +G K    
Sbjct: 1042 VAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKG-KSLHG 1100

Query: 463  MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
               +  I  +    + ++D++ + G    A N+ ++M  ++ +  W+ ++ G  +HGD
Sbjct: 1101 YTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLI-TWNLMIYGYGSHGD 1157



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 211/474 (44%), Gaps = 79/474 (16%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T +     LL++C++  ++  GK +H   +  G       IA  L+ MY++CG    A+ 
Sbjct: 559 TSVFTFPSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPF-IATSLVNMYVKCGFLDYAVQ 617

Query: 63  LFDEMPR-----RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGF 113
           +FD   +     R+    N+MI+G+ K    ++ +  F  M     + + FS ++++S  
Sbjct: 618 VFDGWSQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVL 677

Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
            K      E GKQIH ++L N LD DS L ++L+++Y K                   F 
Sbjct: 678 CKEGNFRREDGKQIHGYMLRNSLDGDSFLKTALIDMYFK-------------------FG 718

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNG 232
           LS             DA RVF    D S+ V+WN MI G+  +     +L L+   + N 
Sbjct: 719 LST------------DAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNS 766

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           V   +++    L ACS       G+Q+H    K+G+ +D  V+++LL  YSK        
Sbjct: 767 VKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSK-------- 818

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
                                  CG + +A+ +F  + +K L  WN+M+    +N +   
Sbjct: 819 -----------------------CGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYS 855

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL+LF  M +  +  D F+L++VIS C+     + G+ V A +    + S   I ++L+ 
Sbjct: 856 ALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLT 915

Query: 413 FYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
            Y KCG   DA  +F  M     +  ++ + +++S     G  KE  K F  MK
Sbjct: 916 LYSKCGCDTDAYLVFKSME----EKDMVAWGSLISGLCKNGKFKEALKVFGDMK 965



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 138/531 (25%), Positives = 213/531 (40%), Gaps = 128/531 (24%)

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-------AKADLAALEYGKQ 126
           S N+ I   ++ G   ++L L+     K+D S  +  S F       A + L  L  GK 
Sbjct: 527 SVNSGIRALIQKGEYLQALHLYT----KHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKT 582

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  I+V G  +D  + +SLVN+Y K                               CG 
Sbjct: 583 IHGSIIVLGWRYDPFIATSLVNMYVK-------------------------------CGF 611

Query: 187 MNDARRVFDRTTDTSS-----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           ++ A +VFD  + +        + NSMI GY       E +  F +M   GV  DA +L+
Sbjct: 612 LDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLS 671

Query: 242 SVLSA-CSSLGFL-EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            V+S  C    F  E GKQ+HG+  +  +  D  + +AL+D Y K G+ +DA ++F E  
Sbjct: 672 IVVSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVE-- 729

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                              IED  ++         + WN MIVG   +     +L+L+  
Sbjct: 730 -------------------IEDKSNV---------VLWNVMIVGFGGSEICESSLELYML 761

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-- 417
                +++   S    + AC+   +   G Q+   V  +GLD+D  +STSL+  Y KC  
Sbjct: 762 AKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGM 821

Query: 418 -------------------------------GYDALALFNEMRNTGVKPTIITFTAILSA 446
                                          GY AL LF  MR   V P   T + ++S 
Sbjct: 822 VGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISC 881

Query: 447 CDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           C   GL   G+    +  K      P IE  S ++ L+++ GC  +A  + + M  E D+
Sbjct: 882 CSMFGLYDYGKSVHAELFKRPIQSTPAIE--SALLTLYSKCGCDTDAYLVFKSME-EKDM 938

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIE----LDPE--------NACAYIQ 544
             W S++ G   +G      KV   M +    L P+        NACA ++
Sbjct: 939 VAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLE 989



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 110/259 (42%), Gaps = 45/259 (17%)

Query: 186 KMNDA--RRVFDRTTDT--SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL-EDASTL 240
           K++D   RR   R  D+  S    NS I   I   E  +AL L+ K   +  L     T 
Sbjct: 505 KLHDVHIRRRLSRLADSYISPASVNSGIRALIQKGEYLQALHLYTKHDGSSPLWTSVFTF 564

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF----- 295
            S+L ACSSL  L  GK +HG    +G   D  +A++L++ Y K G    A ++F     
Sbjct: 565 PSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQ 624

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
           S +   D  + N+MI  Y    R ++    FR M          +++G            
Sbjct: 625 SGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRM----------LVLG------------ 662

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSL--ELGEQVFARVTIIGLDSDQIISTSLVDF 413
                    +R D FSL+ V+S      +   E G+Q+   +    LD D  + T+L+D 
Sbjct: 663 ---------VRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFLKTALIDM 713

Query: 414 YCKCGY--DALALFNEMRN 430
           Y K G   DA  +F E+ +
Sbjct: 714 YFKFGLSTDAWRVFVEIED 732



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 20/239 (8%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            +  +L + ++  S+  GK LH + L+ GI + T  + N L+ MY++CG    A  +F +M
Sbjct: 1079 ITSVLVAISSTASLLKGKSLHGYTLRLGIPSDT-HLKNALIDMYVKCGFSKYAENIFKKM 1137

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLI-----SGFAKADL 118
              ++  +WN MI G+   G    +L LF+ + +     +D ++  LI     SGF +   
Sbjct: 1138 QHKSLITWNLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGK 1197

Query: 119  AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD----FCL 174
               E  KQ +      G++      +++V+L G+ G    A   +  M    D     CL
Sbjct: 1198 NFFEIMKQDY------GIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCL 1251

Query: 175  SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
             +    + N      +     R        +  +I+ Y+      EA  L  +M+  G+
Sbjct: 1252 LSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGEMKERGL 1310


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 181/576 (31%), Positives = 271/576 (47%), Gaps = 101/576 (17%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-- 100
           ++  LL MY + G  +DA  +FD+MP RN  SW AM+ G+      E++ +LF +M Q  
Sbjct: 160 VSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQEC 219

Query: 101 ---KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
              KN+F    ++S  +      L  G Q+H  +L +GL     + +SLV +Y K     
Sbjct: 220 PLEKNEFVATAVLSAVSVP--LGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAK----- 272

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
                                   A C  M+ A  VF  + + +S+ W++MI+GY  N E
Sbjct: 273 ------------------------AEC--MDAAMAVFGSSKERNSITWSAMITGYAQNGE 306

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
              A  +F +M   G      T   +L+A S +G L  GKQ HG   K+G    V V SA
Sbjct: 307 ADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSA 366

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           L+D Y+K G   DA   F +L  YD                ++D            ++ W
Sbjct: 367 LVDMYAKCGCTGDAKDGFHQL--YD----------------VDD------------VVIW 396

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
            +MI G  QNG   EAL L+  M+K  +     ++ SV+ ACA +++LE G+Q+ A++  
Sbjct: 397 TAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILK 456

Query: 398 IGLDSDQIISTSLVDFYCKCG---------------------------------YDALAL 424
            G      + T+L   Y KCG                                  DAL L
Sbjct: 457 CGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDL 516

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F EM+  G+ P  ITF  +L AC H GLV  G  +F AM   Y + P+++HY+C+VD+ +
Sbjct: 517 FEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILS 576

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544
           RAG L EA + IE +  +    +W  +L  C +  D  +G    E+++EL  E++ AYI 
Sbjct: 577 RAGQLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYIL 636

Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           LS+I+A   +W     +R +MR + V K PGCSW +
Sbjct: 637 LSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCSWVE 672



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 134/547 (24%), Positives = 230/547 (42%), Gaps = 120/547 (21%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD----ALLLFDEMPR--RNCFSWN 76
            G  LH   LK G  + T P++N L+  Y  C  P      A  +F ++P   R+  SWN
Sbjct: 32  AGDALHGWALKSGAASHT-PVSNSLITFY--CSPPRPLLGAAFAVFADIPAGLRDVASWN 88

Query: 77  AMI------EGFMKLGHKEKSLQLFN-VMPQKNDFSWNMLISGFAKADLAALEYGKQIHS 129
           +++      +    L H    +   + V+P  + F+        A A + +   G   H+
Sbjct: 89  SLLNPLSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFT----AAARVPSASAGAVAHA 144

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
                   F   L SS           + +N V         F  +AL++ Y   G ++D
Sbjct: 145 --------FACKLPSS-----------SGSNNV---------FVSTALLNMYCKLGAISD 176

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS-VLSACS 248
           ARRVFD+    ++V W +M+SGY +     EA  LF  M +   LE    +A+ VLSA S
Sbjct: 177 ARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVS 236

Query: 249 -SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
             LG L  G Q+HG   K G++  V V ++L+  Y+K      A  +F   K  ++I  +
Sbjct: 237 VPLGLLI-GVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWS 295

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            MIT                               G +QNG    A  +F  M+      
Sbjct: 296 AMIT-------------------------------GYAQNGEADCAATMFLQMHSAGFSP 324

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
            +F+   +++A +++ +L +G+Q    +  +G +    + ++LVD Y KCG         
Sbjct: 325 TEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGF 384

Query: 419 ---YD----------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
              YD                      AL L++ M   GV P+ +T T++L AC     +
Sbjct: 385 HQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAAL 444

Query: 454 KEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           + G++     +K  + +   +   + +  ++++ G L +++ +  +MP + D+  W+SI+
Sbjct: 445 EPGKQLHAQILKCGFGLGGSVG--TALSTMYSKCGNLEDSMVVFRRMP-DRDIISWNSII 501

Query: 513 RGCVAHG 519
            G   HG
Sbjct: 502 SGFSQHG 508



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 162/385 (42%), Gaps = 76/385 (19%)

Query: 205 WNSMISGYISNNEDTEALLLFHKM--RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           WNS+++  +S ++   AL  F  M    + VL    + A+V +A + +     G   H  
Sbjct: 87  WNSLLNP-LSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAF 145

Query: 263 ACKVGVI---DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           ACK+      ++V V++ALL+ Y K G  SDA ++F ++                     
Sbjct: 146 ACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQM--------------------- 184

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISA 378
                     P+++ +SW +M+ G +      EA +LF  M  +  L  ++F   +V+SA
Sbjct: 185 ----------PHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSA 234

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------------- 417
            +    L +G Q+   V   GL     +  SLV  Y K                      
Sbjct: 235 VSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITW 294

Query: 418 -----GYD-------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                GY        A  +F +M + G  PT  TF  IL+A    G +  G++    M  
Sbjct: 295 SAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMV- 353

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
           +   + ++   S +VD++A+ GC  +A +   Q+    DV +W++++ G V +G+     
Sbjct: 354 KLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEAL 413

Query: 526 KVAERMIELDPENAC-AYIQLSSIF 549
            +  RM   D E    +Y+ ++S+ 
Sbjct: 414 MLYSRM---DKEGVMPSYLTVTSVL 435



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L++C    ++  GKQLH   LK G  L  ++  A  L  MY +CGN  D++++F  MP 
Sbjct: 434 VLRACACLAALEPGKQLHAQILKCGFGLGGSVGTA--LSTMYSKCGNLEDSMVVFRRMPD 491

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           R+  SWN++I GF + G    +L LF  M
Sbjct: 492 RDIISWNSIISGFSQHGRGRDALDLFEEM 520


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 178/602 (29%), Positives = 273/602 (45%), Gaps = 110/602 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQLH H +K G     L + N++L +Y++C    DA  LF+E+P RN  SWN MI   +
Sbjct: 79  GKQLHAHLIKFGFCQ-VLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASV 137

Query: 84  KLGHKEKS----------LQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILV 133
               + +S           ++   M   +  ++N LI    + +   +E G Q+H   + 
Sbjct: 138 GRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFN--DIEMGVQLHCFTVK 195

Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
            G D D  +G +LV LY K                               CG + +ARRV
Sbjct: 196 VGFDLDCFVGCALVGLYAK-------------------------------CGFVENARRV 224

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS--SLG 251
           F   +    VMWN M+S Y+ N+   EA  +F+ MR + V  D  T +S+LS  S  +L 
Sbjct: 225 FCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALE 284

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
           + + GKQVH    +     DV+VASAL++ Y+K     DA ++F E+ + + +       
Sbjct: 285 YYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVV------- 337

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
                                   +WN+MIVG   +G   E + L   M +     D+ +
Sbjct: 338 ------------------------AWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELT 373

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------- 418
           ++S+IS+C   S++    QV A    +       ++ SL+  Y KCG             
Sbjct: 374 ISSIISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELTS 433

Query: 419 ---------------YDALA-----LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                          +  LA     +F +M + G+KP  I F  +LSAC HCGLV +G  
Sbjct: 434 QPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLH 493

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
           +F  M   Y I P+ EHY+C+VDL  R G +NEA  ++  MP E D     + +  C  H
Sbjct: 494 YFKLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLH 553

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            +  L +  AE++  ++PE +  Y  +S+IFA+   W     IR  M +K   K+PGCSW
Sbjct: 554 SNMELAKLAAEKLFLIEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSW 613

Query: 579 AD 580
            +
Sbjct: 614 IE 615



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 128/333 (38%), Gaps = 72/333 (21%)

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           ++ L   +  G+L  GKQ+H H  K G    + + + +L  Y K     DA KLF EL  
Sbjct: 64  SNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEEL-- 121

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI---VGLSQNGSPIEALDLF 357
                                        P ++++SWN MI   VG +           F
Sbjct: 122 -----------------------------PVRNVVSWNIMIRASVGRNDENESSGMRLCF 152

Query: 358 CNMNKLDLRM---DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
               ++ L M   D  +   +I  C   + +E+G Q+      +G D D  +  +LV  Y
Sbjct: 153 SYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLY 212

Query: 415 CKCGY---------------------------------DALALFNEMRNTGVKPTIITFT 441
            KCG+                                 +A  +FN MR   V     TF+
Sbjct: 213 AKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFS 272

Query: 442 AILSACDHCGL-VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           ++LS      L   +  K   ++  +   D ++   S +++++A++  + +A  + ++M 
Sbjct: 273 SLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMS 332

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
              +V  W++++ G   HGD     K+ + M+ 
Sbjct: 333 IR-NVVAWNTMIVGFGNHGDGNEVMKLVKEMLR 364


>gi|302809332|ref|XP_002986359.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
 gi|300145895|gb|EFJ12568.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
          Length = 516

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/475 (32%), Positives = 241/475 (50%), Gaps = 49/475 (10%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK--------EPDD 171
           AL  GKQ+HSH++  GLD D VLG  LV +YGKC     A      +          PD 
Sbjct: 39  ALWAGKQVHSHMIARGLDRDKVLGDILVQMYGKCRSLGDARDAFERLAYRDIYSGMTPDV 98

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
              ++L++ YA CG+++DAR +FD     S   WN+MI+GY   +   EA  LF  +   
Sbjct: 99  VVHNSLVNLYAKCGRIDDARSLFDGMQVRSLASWNAMIAGYAHLDLGDEAFDLFRCIDLE 158

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           G+  D  T  ++L ACS+  F++ G+ +H     +G+  ++++A+ALLD Y+K G    A
Sbjct: 159 GLGPDMLTFINLLGACSTPEFVDAGRNIHARVAALGLDSNLVLATALLDMYAKCGSIEGA 218

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
             +F+ +   D    N++I +Y+ CG +++A+  F +MP +S++SWN ++ G  +     
Sbjct: 219 RSVFASMA--DNKNQNSIINMYARCGSLDEARACFDSMPRRSVVSWNVLMSGYVEQQQGE 276

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           E+L L   M+   +  + F+ + V +AC+ +  L  G    +R+   G D+D+++ T+L+
Sbjct: 277 ESLKLVRCMDWQGIHPNAFTFSCVATACSLLKDLRAGRAAHSRIVASGFDTDRVVVTALM 336

Query: 412 DFYCKCG--------------------------------------YDALALFNEMRNTGV 433
           D Y +CG                                       +AL LF EM   G 
Sbjct: 337 DMYGRCGSVEAARRTFDDMRRRCSTRVDVVSWNAMMGLYSHHGQPREALELFGEMGLAGE 396

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
               ++ T +L AC H GLV +  +   A   +  I P  EHY+C+VD+ ARAG L  A 
Sbjct: 397 AGNEVSLTLVLHACTHAGLVADAVEAL-ARGVEAGIVPSREHYACVVDVLARAGKLEVAE 455

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
            ++  MP E  +G W  +L  C  HGD G G   A+ ++E+ P NA  Y+ LS+I
Sbjct: 456 EVMNNMPVEPGIGAWKCLLGACAVHGDAGRGSSAAQHVVEMQPTNAAPYVLLSNI 510



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 210/487 (43%), Gaps = 85/487 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGI-------------------------------- 36
           A LL+ C    ++  GKQ+H H + +G+                                
Sbjct: 28  ASLLRQCGRSRALWAGKQVHSHMIARGLDRDKVLGDILVQMYGKCRSLGDARDAFERLAY 87

Query: 37  ------LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
                 +   + + N L+ +Y +CG   DA  LFD M  R+  SWNAMI G+  L   ++
Sbjct: 88  RDIYSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQVRSLASWNAMIAGYAHLDLGDE 147

Query: 91  SLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSL 146
           +  LF  +  +    +  ++  L+   +  +   ++ G+ IH+ +   GLD + VL ++L
Sbjct: 148 AFDLFRCIDLEGLGPDMLTFINLLGACSTPEF--VDAGRNIHARVAALGLDSNLVLATAL 205

Query: 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
           +++Y KCG    A  V   M   D+   +++I+ YA CG +++AR  FD     S V WN
Sbjct: 206 LDMYAKCGSIEGARSVFASMA--DNKNQNSIINMYARCGSLDEARACFDSMPRRSVVSWN 263

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
            ++SGY+   +  E+L L   M   G+  +A T + V +ACS L  L  G+  H      
Sbjct: 264 VLMSGYVEQQQGEESLKLVRCMDWQGIHPNAFTFSCVATACSLLKDLRAGRAAHSRIVAS 323

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G   D +V +AL+D Y +                               CG +E A+  F
Sbjct: 324 GFDTDRVVVTALMDMYGR-------------------------------CGSVEAARRTF 352

Query: 327 RTMPNK-----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
             M  +      ++SWN+M+   S +G P EAL+LF  M       ++ SL  V+ AC +
Sbjct: 353 DDMRRRCSTRVDVVSWNAMMGLYSHHGQPREALELFGEMGLAGEAGNEVSLTLVLHACTH 412

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNE-MRNTGVKPTIITF 440
              +    +  AR    G+   +     +VD   + G   L +  E M N  V+P I  +
Sbjct: 413 AGLVADAVEALARGVEAGIVPSREHYACVVDVLARAG--KLEVAEEVMNNMPVEPGIGAW 470

Query: 441 TAILSAC 447
             +L AC
Sbjct: 471 KCLLGAC 477



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 168/364 (46%), Gaps = 30/364 (8%)

Query: 233 VLED---ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
           VLED    +T AS+L  C     L  GKQVH H    G+  D ++   L+  Y K     
Sbjct: 17  VLEDNPGKATYASLLRQCGRSRALWAGKQVHSHMIARGLDRDKVLGDILVQMYGKCRSLG 76

Query: 290 DACKLFSELK---VY-----DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
           DA   F  L    +Y     D ++ N+++ +Y+ CGRI+DA+ +F  M  +SL SWN+MI
Sbjct: 77  DARDAFERLAYRDIYSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQVRSLASWNAMI 136

Query: 342 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 401
            G +      EA DLF  ++   L  D  +  +++ AC+    ++ G  + ARV  +GLD
Sbjct: 137 AGYAHLDLGDEAFDLFRCIDLEGLGPDMLTFINLLGACSTPEFVDAGRNIHARVAALGLD 196

Query: 402 SDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
           S+ +++T+L+D Y KCG    A ++F  M +   + +II   A       CG + E +  
Sbjct: 197 SNLVLATALLDMYAKCGSIEGARSVFASMADNKNQNSIINMYA------RCGSLDEARAC 250

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCV 516
           FD+M  +      +  ++ ++  +       E++ L+  M ++    +   +S +   C 
Sbjct: 251 FDSMPRR-----SVVSWNVLMSGYVEQQQGEESLKLVRCMDWQGIHPNAFTFSCVATACS 305

Query: 517 AHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
              D   GR    R++    D +       L  ++   G  E +    D MR +   ++ 
Sbjct: 306 LLKDLRAGRAAHSRIVASGFDTDRV-VVTALMDMYGRCGSVEAARRTFDDMRRRCSTRVD 364

Query: 575 GCSW 578
             SW
Sbjct: 365 VVSW 368


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 295/609 (48%), Gaps = 97/609 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C     I +GK +H  +  K  L+  L + N L+ MY +CG  T+A ++F   
Sbjct: 45  LVTVLPVCAREREIGLGKGVH-GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMN 103

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-AKADLAALEYGKQ 126
             +N  SWN M+ GF   G    +   F+V+ Q       ML  G   KAD   +     
Sbjct: 104 NNKNVVSWNTMVGGFSAEGDTHGT---FDVLRQ-------MLAGGEDVKADEVTILNAVP 153

Query: 127 IHSHILVNGLDFDSVLGS-SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +  H        +S L S   ++ Y    +F     V N           A ++ YA CG
Sbjct: 154 VCFH--------ESFLPSLKELHCYSLKQEFVYNELVAN-----------AFVASYAKCG 194

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++ A+RVF      +   WN++I G+  +N+   +L    +M+ +G+L D+ T+ S+LS
Sbjct: 195 SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 254

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS L  L  GK+VHG                ++  + +R           +L VY ++L
Sbjct: 255 ACSKLKSLRLGKEVHGF---------------IIRNWLER-----------DLFVYLSVL 288

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                ++Y  CG +   + +F  M +KSL+SWN++I G  QNG P  AL +F  M    +
Sbjct: 289 -----SLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 343

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           ++   S+  V  AC+ + SL LG +  A      L+ D  I+ SL+D Y K G       
Sbjct: 344 QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 403

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +A+ LF EM+ TG  P  +TF  +L+AC+H GL
Sbjct: 404 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 463

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI-EQMPFEADVGMWSSI 511
           + EG ++ D MK  + + P ++HY+C++D+  RAG L++A+ ++ E+M  EADVG+W S+
Sbjct: 464 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 523

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  H +  +G KVA ++ EL+PE    Y+ LS+++A  G+WE    +R  M E  + 
Sbjct: 524 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 583

Query: 572 KLPGCSWAD 580
           K  GCSW +
Sbjct: 584 KDAGCSWIE 592



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 111/510 (21%), Positives = 205/510 (40%), Gaps = 119/510 (23%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL-------- 121
           RN  SWN+MI  F   G  E+S  L   M ++N         G    D+A L        
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENG-------DGAFMPDVATLVTVLPVCA 53

Query: 122 -----EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
                  GK +H   +   LD + VL ++L+++Y KCG   +A  +              
Sbjct: 54  REREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF------------- 100

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG--VL 234
                    KMN+ + V         V WN+M+ G+ +  +      +  +M   G  V 
Sbjct: 101 ---------KMNNNKNV---------VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVK 142

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D  T+ + +  C    FL   K++H ++ K   + + +VA+A + +Y+K          
Sbjct: 143 ADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAK---------- 192

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                CG +  A+ +F  + +K++ SWN++I G +Q+  P  +L
Sbjct: 193 ---------------------CGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSL 231

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           D    M    L  D F++ S++SAC+ + SL LG++V   +    L+ D  +  S++  Y
Sbjct: 232 DAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLY 291

Query: 415 CKCG--------YD-------------------------ALALFNEMRNTGVKPTIITFT 441
             CG        +D                         AL +F +M   G++   I+  
Sbjct: 292 IHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMM 351

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            +  AC     ++ G++   A   ++ ++ +      ++D++A+ G + ++  +   +  
Sbjct: 352 PVFGACSLLPSLRLGRE-AHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK- 409

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           E     W++++ G   HG      K+ E M
Sbjct: 410 EKSTASWNAMIMGYGIHGLAKEAIKLFEEM 439


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 181/611 (29%), Positives = 295/611 (48%), Gaps = 121/611 (19%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI--- 79
           +GKQ+H + L+KG LNS   I N L+ MY + G    + +L      R+  +WN ++   
Sbjct: 216 MGKQVHAYGLRKGELNSF--IINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSL 273

Query: 80  ---EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG- 135
              E F++     + + L  V P  + F+ + ++   A + L  L  GK++H++ L NG 
Sbjct: 274 CQNEQFLEALEYLREMVLEGVEP--DGFTISSVLP--ACSHLEMLRTGKELHAYALKNGS 329

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
           LD +S +GS+LV++Y                                NC ++    RVFD
Sbjct: 330 LDENSFVGSALVDMY-------------------------------CNCKQVLSGCRVFD 358

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLE 254
              D    +WN+MI+GY  N  D EALLLF +M  + G+L +++T+A V+ AC   G   
Sbjct: 359 GMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFS 418

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
             + +HG   K G+  D  V +AL+D YS+                              
Sbjct: 419 KKEAIHGFVVKRGLDRDRFVQNALMDMYSR------------------------------ 448

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-----------NKL 363
             G+I+ AK IF  M ++ L++WN++I G   +    +AL +   M           +++
Sbjct: 449 -LGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRV 507

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            L+ +  +L +++ +CA +S+L  G+++ A      L +D  + ++LVD Y KCG     
Sbjct: 508 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMS 567

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        DA+ +   M   GVKP  +TF ++ +AC H 
Sbjct: 568 RKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHS 627

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD-VGMWS 509
           G+V EG K F  MK  Y ++P  +HY+C+VDL  RAG + EA  LI  +P   D  G WS
Sbjct: 628 GMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWS 687

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           S+L  C  H +  +G   A+ +I+L+P  A  Y+ L++I++++G W K++ +R  M+ + 
Sbjct: 688 SLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQG 747

Query: 570 VGKLPGCSWAD 580
           V K PGCSW +
Sbjct: 748 VRKEPGCSWIE 758



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 134/561 (23%), Positives = 233/561 (41%), Gaps = 116/561 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++      + +GKQ+H H  K G    ++ +AN L+ +Y +CG+      +FD +  R
Sbjct: 99  LLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 158

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALE---YGK 125
           N  SWN++I         E +L+ F  M  ++    S+ ++    A ++    E    GK
Sbjct: 159 NQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGK 218

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H++ L  G                                E + F ++ L++ Y   G
Sbjct: 219 QVHAYGLRKG--------------------------------ELNSFIINTLVAMYGKMG 246

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           K+  ++ +         V WN+++S    N +  EAL    +M   GV  D  T++SVL 
Sbjct: 247 KLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLP 306

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDD-VIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           ACS L  L  GK++H +A K G +D+   V SAL+D                        
Sbjct: 307 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVD------------------------ 342

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-L 363
                  +Y +C ++     +F  M ++ +  WN+MI G +QN    EAL LF  M +  
Sbjct: 343 -------MYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESA 395

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            L  +  ++A V+ AC    +    E +   V   GLD D+ +  +L+D Y + G     
Sbjct: 396 GLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIA 455

Query: 420 -----------------------------DALALFNEMR-----------NTGVKPTIIT 439
                                        DAL + ++M+              +KP  IT
Sbjct: 456 KRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSIT 515

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
              IL +C     + +G++   A   + ++  ++   S +VD++A+ GCL  +  + +Q+
Sbjct: 516 LMTILPSCAALSALAKGKE-IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 574

Query: 500 PFEADVGMWSSILRGCVAHGD 520
           P   +V  W+ I+     HG+
Sbjct: 575 PIR-NVITWNVIVMAYGMHGN 594



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 178/375 (47%), Gaps = 53/375 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C+    +  GK+LH + LK G L+    + + L+ MY  C        +FD M
Sbjct: 301 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGM 360

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-MLISGFAKADLAALEYGKQ 126
             R    WNAMI G+ +  + E++L LF  M +      N   ++G   A + +  + K+
Sbjct: 361 FDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKK 420

Query: 127 --IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
             IH  ++  GLD D  + ++L+++Y + G  + A ++                      
Sbjct: 421 EAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIF--------------------- 459

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-----------RNGV 233
           GKM D             V WN++I+GY+ +    +ALL+ HKM+           R  +
Sbjct: 460 GKMED----------RDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSL 509

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
             ++ TL ++L +C++L  L  GK++H +A K  +  DV V SAL+D Y+K G    + K
Sbjct: 510 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 569

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQN 347
           +F ++ + + I  N ++  Y   G  +DA  + R M      PN+  +++ S+    S +
Sbjct: 570 VFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNE--VTFISVFAACSHS 627

Query: 348 GSPIEALDLFCNMNK 362
           G   E L +F NM K
Sbjct: 628 GMVNEGLKIFYNMKK 642



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 137/347 (39%), Gaps = 70/347 (20%)

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           W  ++   + +N   EA+L +  M   G+  D     ++L A + L  ++ GKQ+H H  
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 265 KVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
           K G  +D V VA                               NT++ +Y  CG      
Sbjct: 121 KFGYGVDSVTVA-------------------------------NTLVNLYRKCGDFGAVY 149

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
            +F  +  ++ +SWNS+I  L        AL+ F  M   D+    F+L SV  AC+N  
Sbjct: 150 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFP 209

Query: 384 SLE---LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
             E   +G+QV A     G  +  II+T LV  Y K G                      
Sbjct: 210 MPEGLLMGKQVHAYGLRKGELNSFIINT-LVAMYGKMGKLASSKVLLGSFEGRDLVTWNT 268

Query: 419 -----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +AL    EM   GV+P   T +++L AC H  +++ G++         
Sbjct: 269 VLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNG 328

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            +D      S +VD++     +     + + M F+  +G+W++++ G
Sbjct: 329 SLDENSFVGSALVDMYCNCKQVLSGCRVFDGM-FDRKIGLWNAMITG 374


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 234/430 (54%), Gaps = 35/430 (8%)

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           + G +  A+RVF+  T  ++ MWN++I  Y +++E   A L + +M  + V  ++ T   
Sbjct: 34  HVGDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPF 93

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L AC +L  +    QVHG   K+G   DV   +ALL  Y+  G    A +LF  +   D
Sbjct: 94  LLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERD 153

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            +  N MI  Y   G ++ A  +F  MP K+++SW S+I GL + G  +EAL L   M  
Sbjct: 154 AVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQN 213

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
               +D  ++AS+++ACAN+ +L+ G  +   V   G+D D++I  +LV+ Y KCG    
Sbjct: 214 AGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEE 273

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +AL  FN MR  G++P  ITFTA+L AC
Sbjct: 274 ALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRAC 333

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            + GLV+EG++ F +MK  Y+++P IEHY CMVDL  R+G L+EA  LI++MP +    +
Sbjct: 334 SYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVI 393

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L+ C  H D  LG +V   ++E+D +++  YIQL++I A  G+W++++ +R  M+ 
Sbjct: 394 WGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKS 453

Query: 568 KHVGKLPGCS 577
             V   PG S
Sbjct: 454 LGVPISPGKS 463



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 197/437 (45%), Gaps = 54/437 (12%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL-----FDEMPRRNCFSWNAMI 79
           KQ+    +K  I+     +A + L +   C +P    LL     F+ +   N F WNA+I
Sbjct: 5   KQIQAQMIKTAIITEP-KLATKFLTL---CTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60

Query: 80  EGFMKLGHKEKSL----QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
             +      E +     Q+ +     N +++  L+   A  +L A+    Q+H  ++  G
Sbjct: 61  RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLR--ACRNLLAMGEALQVHGLVIKLG 118

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
              D    ++L+++Y  CG+ + A Q+ + + E D    + +I GY   G +  A  VF 
Sbjct: 119 FGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFL 178

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
                + V W S+ISG +   +  EAL L ++M+  G   D   +AS+L+AC++LG L+ 
Sbjct: 179 DMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQ 238

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G+ +H +    GV  D ++  AL++ Y K                               
Sbjct: 239 GRWLHFYVLNNGVDVDRVIGCALVNMYVK------------------------------- 267

Query: 316 CGRIEDAKHIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
           CG +E+A  +F  +    K +  W +MI G + +G  +EAL+ F  M +  +R +  +  
Sbjct: 268 CGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFT 327

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGY--DALALFNEMRN 430
           +V+ AC+    +E G+++F  +      +  I     +VD   + G   +A  L  +M  
Sbjct: 328 AVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMP- 386

Query: 431 TGVKPTIITFTAILSAC 447
             +KP+ + + A+L AC
Sbjct: 387 --MKPSAVIWGALLKAC 401


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/554 (30%), Positives = 272/554 (49%), Gaps = 103/554 (18%)

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK-ADLAALEYGKQIHSHILV 133
           +N  I  F +LG+  ++++L N  P K D       S     ADL +++ G++IHS I  
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSP-KPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQS 129

Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
           N ++ D VLGS LV +Y                                 CG + + RR+
Sbjct: 130 NDVEVDGVLGSKLVFMY-------------------------------VTCGDLREGRRI 158

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV--LEDASTLASVLSACSSLG 251
           FD+  +    +WN +++GY       E+L LF +MR  G+  +E A  L           
Sbjct: 159 FDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKL----------- 207

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV----------- 300
           F E G +            DVI  ++++  Y   G+      LF ++ +           
Sbjct: 208 FDELGDR------------DVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMV 255

Query: 301 -YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             +  L N ++ +YS  G +  A  +F TM  +S++SW SMI G ++ G    ++ LF  
Sbjct: 256 SVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 315

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M K DL  +  ++A ++ ACA++++LE G+++   +   G   D+ ++ +LVD Y KCG 
Sbjct: 316 MEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGA 375

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+A FNEMRN+G++P  ++F +IL A
Sbjct: 376 LGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYA 435

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL+ EG  +F+ M+    I+P+ EHY+C+VDL ARAG L++A   I+ MP E D  
Sbjct: 436 CSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 495

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L GC  + D  L  KVAE + EL+PEN   Y+ L++I+A + +WE+   +R+ + 
Sbjct: 496 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIG 555

Query: 567 EKHVGKLPGCSWAD 580
            + + K PGCSW +
Sbjct: 556 RRGLRKNPGCSWIE 569



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 129/528 (24%), Positives = 228/528 (43%), Gaps = 101/528 (19%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  +     +LQ C    SI  G+++H   ++   +     + ++L+ MY+ CG+  +  
Sbjct: 98  DLELRTYCSVLQLCADLKSIQDGRRIH-SIIQSNDVEVDGVLGSKLVFMYVTCGDLREGR 156

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------KND 103
            +FD++     F WN ++ G+ K+G+  +SL LF  M +                  ++ 
Sbjct: 157 RIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDV 216

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD--------SVLGSSLVNLYGKCGD 155
            SWN +ISG+    L+  E G  +   +L+ G++ D          L + L+++Y K G+
Sbjct: 217 ISWNSMISGYVSNGLS--EKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGN 274

Query: 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 215
            NSA QV   M E      +++I+GYA  G            +D S              
Sbjct: 275 LNSAIQVFETMGERSVVSWTSMIAGYAREG-----------LSDMS-------------- 309

Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
                 + LFH+M +  +  ++ T+A +L AC+SL  LE G+++HGH  + G   D  VA
Sbjct: 310 ------VRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVA 363

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
           +AL+D Y K                               CG +  A+ +F  +P K L+
Sbjct: 364 NALVDMYLK-------------------------------CGALGLARLLFDMIPEKDLV 392

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
           SW  MI G   +G   EA+  F  M    +  D+ S  S++ AC++   L+ G   F  +
Sbjct: 393 SWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMM 452

Query: 396 T---IIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                I   S+      +VD   + G  + A +  ++   ++P    + A+L  C     
Sbjct: 453 RNNCCIEPKSEHY--ACIVDLLARAGNLSKA-YKFIKMMPIEPDATIWGALLCGCRIYHD 509

Query: 453 VKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM 499
           VK  +K  + +   + ++PE   +Y  + +++A A    E   L E++
Sbjct: 510 VKLAEKVAEHV---FELEPENTGYYVLLANIYAEAEKWEEVKKLRERI 554


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 175/608 (28%), Positives = 291/608 (47%), Gaps = 105/608 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L R+L S ++     V     LH L   +++S+  +   L   Y R G    A       
Sbjct: 13  LRRVLSSSSSSSPTTVAALTRLHALL--VVSSSQNLFPSLAAAYARVGALDAAESTLAAS 70

Query: 68  PR-RNCF-SWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKADLAALE 122
           P  R+C  +WNA++    + G    +L++F  +P   + +  ++ + ++  A+  L  L+
Sbjct: 71  PSSRSCIPAWNALLAARSRAGSPGAALRVFRALPSSARPDSTTFTLALTACAR--LGDLD 128

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
             + +       G              YG+                 D F  SAL+  Y+
Sbjct: 129 AAEAVRVRAFAAG--------------YGR-----------------DVFVCSALLHVYS 157

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            CG M DA RVFD       V W++M++G++S     EAL ++ +MR +GV ED   +  
Sbjct: 158 RCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVG 217

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           V+ AC+  G    G  VHG   + G+  DV++A++L+D Y+K                  
Sbjct: 218 VIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKN----------------- 260

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                         G  + A+ +FR MP ++ +SWN++I G +QNG   EALDLF  M+ 
Sbjct: 261 --------------GHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMST 306

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
             L+ D  +L S + ACA++  L+LG+ +   + +  L+   I+ T+++D Y KCG    
Sbjct: 307 SGLQPDSGALVSALLACADVGFLKLGKSIHGFI-LRRLEFQCILGTAVLDMYSKCGSLES 365

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                        +DALALF E+  TG+KP   TF ++LSA  H
Sbjct: 366 ARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSH 425

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV+EG+ WFD M  ++ I+P  +H  C+VDL AR+G + EA  ++  M  E  + +W 
Sbjct: 426 SGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWV 485

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           ++L GC+ +    LG  +A++++E  PE+      +S+++A + +W+K   IR +M++  
Sbjct: 486 ALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSG 545

Query: 570 VGKLPGCS 577
             K+PG S
Sbjct: 546 SKKVPGYS 553


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 170/611 (27%), Positives = 284/611 (46%), Gaps = 102/611 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C    ++  G+ +H   +K G   +   I   L+ MY +CG   DA+ +F  +
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF-IGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
            + +   W+A+I    + G  E+S++LF++M       N ++   L+S  A  +   L+Y
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS--AATNTGNLQY 433

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+ IH+ +   G + D  + ++LV +Y K G                  C+         
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNG------------------CV--------- 466

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
               +D  ++++   D   + WN+ +SG          L +F+ M   G + +  T  S+
Sbjct: 467 ----HDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISI 522

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L +CS L  + +G+QVH H  K  + D+  V +AL+D Y+K                   
Sbjct: 523 LGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAK------------------- 563

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       C  +EDA   F  +  + L +W  +I   +Q     +AL+ F  M + 
Sbjct: 564 ------------CMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQE 611

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            ++ ++F+LA  +S C++++SLE G+Q+ + V   G  SD  + ++LVD Y KCG     
Sbjct: 612 GVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA 671

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         AL  F  M + G+ P  +TFT ILSAC H 
Sbjct: 672 EALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQ 731

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG++ F++M   + I P ++H +CMVD+  R G  +E  + I++M    +  +W +
Sbjct: 732 GLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWET 791

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L     H +  LG K A ++ EL PE   +YI LS+IFAT G W+    +R +M  K V
Sbjct: 792 VLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGV 851

Query: 571 GKLPGCSWADG 581
            K PGCSW + 
Sbjct: 852 KKEPGCSWVEA 862



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 182/382 (47%), Gaps = 72/382 (18%)

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           PD     +L++ YA C     AR V  +  D   V W ++I G ++     +++ LF +M
Sbjct: 145 PDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEM 204

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
           +  G++ +  TLA+ L ACS    L+ GKQ+H  A K+G++ D+ V SAL+D Y+K    
Sbjct: 205 QNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAK---- 260

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                                      CG IE A  +F  MP ++ ++WN ++ G +Q G
Sbjct: 261 ---------------------------CGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
                L LFC+M +LD++ ++F+L +V+  CAN  +L+ G+ + + +   G + ++ I  
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 409 SLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK-- 464
            LVD Y KCG   DA+ +F  ++    KP I+ ++A+++  D  G  +E  K F  M+  
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIK----KPDIVVWSALITCLDQQGQSEESIKLFHLMRLG 409

Query: 465 --------------------------------WQYHIDPEIEHYSCMVDLFARAGCLNEA 492
                                           W+Y  + ++   + +V ++ + GC+++ 
Sbjct: 410 DTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDG 469

Query: 493 VNLIEQMPFEADVGMWSSILRG 514
             L E M  + D+  W++ L G
Sbjct: 470 TKLYESM-VDRDLISWNAYLSG 490



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 155/637 (24%), Positives = 262/637 (41%), Gaps = 146/637 (22%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ Y + +L+ C +  S+ V K +H   + K ++N    +   L+ +Y +C     A L+
Sbjct: 111 KLKYYSSMLRECASKRSLGVAKAIH-GLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLV 169

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
             +MP R+  SW A+I+G +  G    S+ LF  M  +    N+F+   L +G     L 
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFT---LATGLKACSLC 226

Query: 120 -ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            AL+ GKQ+H+     GL  D  +GS+LV+LY KCG+   A+++   M E +D   + L+
Sbjct: 227 MALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLL 286

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           +GYA  G +                               T  L LF  M    V  +  
Sbjct: 287 NGYAQRGDV-------------------------------TGVLKLFCSMMELDVKCNEF 315

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL +VL  C++   L+ G+ +H    K G   +  +   L+D YSK G+  DA  +F  +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFR------TMPNK----SLIS------------ 336
           K  D ++ + +IT     G+ E++  +F       T+PN+    SL+S            
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 337 ------W-----------NSMIVGLSQNGSPIEALDLFCNMNKLDL-------------- 365
                 W           N+++    +NG   +   L+ +M   DL              
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 366 RMDK-----------------FSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
             D+                 ++  S++ +C+ +  +  G QV A +    LD +  + T
Sbjct: 496 MYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCT 555

Query: 409 SLVDFYCKC---------------------------------GYDALALFNEMRNTGVKP 435
           +L+D Y KC                                 G  AL  F +M+  GVKP
Sbjct: 556 ALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKP 615

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
              T    LS C     ++ GQ+    +    H+  ++   S +VD++A+ GC+ EA  L
Sbjct: 616 NEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVS-DMFVGSALVDMYAKCGCMEEAEAL 674

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
            E +    D   W++I+ G   +G +G     A RM+
Sbjct: 675 FEAL-IRRDTIAWNTIICGYAQNG-QGNKALTAFRMM 709


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 295/609 (48%), Gaps = 97/609 (15%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L  +L  C     I +GK +H  +  K  L+  L + N L+ MY +CG  T+A ++F   
Sbjct: 650  LVTVLPVCAREREIGLGKGVH-GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMN 708

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-AKADLAALEYGKQ 126
              +N  SWN M+ GF   G    +   F+V+ Q       ML  G   KAD   +     
Sbjct: 709  NNKNVVSWNTMVGGFSAEGDTHGT---FDVLRQ-------MLAGGEDVKADEVTILNAVP 758

Query: 127  IHSHILVNGLDFDSVLGS-SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +  H        +S L S   ++ Y    +F     V N           A ++ YA CG
Sbjct: 759  VCFH--------ESFLPSLKELHCYSLKQEFVYNELVAN-----------AFVASYAKCG 799

Query: 186  KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
             ++ A+RVF      +   WN++I G+  +N+   +L    +M+ +G+L D+ T+ S+LS
Sbjct: 800  SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 859

Query: 246  ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            ACS L  L  GK+VHG                ++  + +R           +L VY ++L
Sbjct: 860  ACSKLKSLRLGKEVHGF---------------IIRNWLER-----------DLFVYLSVL 893

Query: 306  LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                 ++Y  CG +   + +F  M +KSL+SWN++I G  QNG P  AL +F  M    +
Sbjct: 894  -----SLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 948

Query: 366  RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
            ++   S+  V  AC+ + SL LG +  A      L+ D  I+ SL+D Y K G       
Sbjct: 949  QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 1008

Query: 419  --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       +A+ LF EM+ TG  P  +TF  +L+AC+H GL
Sbjct: 1009 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 1068

Query: 453  VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI-EQMPFEADVGMWSSI 511
            + EG ++ D MK  + + P ++HY+C++D+  RAG L++A+ ++ E+M  EADVG+W S+
Sbjct: 1069 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 1128

Query: 512  LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
            L  C  H +  +G KVA ++ EL+PE    Y+ LS+++A  G+WE    +R  M E  + 
Sbjct: 1129 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 1188

Query: 572  KLPGCSWAD 580
            K  GCSW +
Sbjct: 1189 KDAGCSWIE 1197



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 130/564 (23%), Positives = 239/564 (42%), Gaps = 110/564 (19%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            ++++C     + +G  +H   +K G++     + N L+  Y   G  TDAL LFD MP R
Sbjct: 548  VIKACAGMSDVGIGLAVHGLVVKTGLVEDVF-VGNALVSFYGTHGFVTDALQLFDIMPER 606

Query: 71   NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-----ADLAALEYG 124
            N  SWN+MI  F   G  E+S  L   M ++N D ++   ++         A    +  G
Sbjct: 607  NLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG 666

Query: 125  KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
            K +H   +   LD + VL ++L+++Y KCG   +A  +                      
Sbjct: 667  KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF--------------------- 705

Query: 185  GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG--VLEDASTLAS 242
             KMN+ + V         V WN+M+ G+ +  +      +  +M   G  V  D  T+ +
Sbjct: 706  -KMNNNKNV---------VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 755

Query: 243  VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
             +  C    FL   K++H ++ K   + + +VA+A + +Y+K                  
Sbjct: 756  AVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAK------------------ 797

Query: 303  TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                         CG +  A+ +F  + +K++ SWN++I G +Q+  P  +LD    M  
Sbjct: 798  -------------CGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKI 844

Query: 363  LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
              L  D F++ S++SAC+ + SL LG++V   +    L+ D  +  S++  Y  CG    
Sbjct: 845  SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCT 904

Query: 419  ----YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACDH 449
                +D                         AL +F +M   G++   I+   +  AC  
Sbjct: 905  VQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSL 964

Query: 450  CGLVKEGQKWFD-AMKWQYHIDPEIEHYSC-MVDLFARAGCLNEAVNLIEQMPFEADVGM 507
               ++ G++    A+K   H+  +    +C ++D++A+ G + ++  +   +  E     
Sbjct: 965  LPSLRLGREAHAYALK---HLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKSTAS 1020

Query: 508  WSSILRGCVAHGDKGLGRKVAERM 531
            W++++ G   HG      K+ E M
Sbjct: 1021 WNAMIMGYGIHGLAKEAIKLFEEM 1044



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/567 (23%), Positives = 242/567 (42%), Gaps = 116/567 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           + L  LLQ+      I +G+++H        L +   +  R++ MY  CG+P D+  +FD
Sbjct: 440 EALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFD 499

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-----FSWNMLISGFAKADLAA 120
            +  +N F WNA+I  + +    ++ L+ F  M    D     F++  +I   A A ++ 
Sbjct: 500 ALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIK--ACAGMSD 557

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           +  G  +H  ++  GL  D  +G++LV+ YG                             
Sbjct: 558 VGIGLAVHGLVVKTGLVEDVFVGNALVSFYG----------------------------- 588

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-MRRNG---VLED 236
               G + DA ++FD   + + V WNSMI  +  N    E+ LL  + M  NG    + D
Sbjct: 589 --THGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPD 646

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
            +TL +VL  C+    +  GK VHG A K+ +  ++++ +AL+D YSK            
Sbjct: 647 VATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSK------------ 694

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                              CG I +A+ IF+   NK+++SWN+M+ G S  G      D+
Sbjct: 695 -------------------CGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDV 735

Query: 357 FCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
              M     D++ D+ ++ + +  C + S L   +++           +++++ + V  Y
Sbjct: 736 LRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASY 795

Query: 415 CKCGYDALA--LFN-------------------------------EMRNTGVKPTIITFT 441
            KCG  + A  +F+                               +M+ +G+ P   T  
Sbjct: 796 AKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVC 855

Query: 442 AILSACDHCGLVKEGQK--WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           ++LSAC     ++ G++   F    W   ++ ++  Y  ++ L+   G L     L + M
Sbjct: 856 SLLSACSKLKSLRLGKEVHGFIIRNW---LERDLFVYLSVLSLYIHCGELCTVQALFDAM 912

Query: 500 PFEADVGMWSSILRGCVAHG--DKGLG 524
             ++ V  W++++ G + +G  D+ LG
Sbjct: 913 EDKSLVS-WNTVITGYLQNGFPDRALG 938


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 166/539 (30%), Positives = 261/539 (48%), Gaps = 60/539 (11%)

Query: 96  NVMPQK--------NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 147
           +VMP++        + F++ ++I   A A + +   GK IH H+L  G      +G+ L+
Sbjct: 27  SVMPRRMRKIGTLGDGFTFPLVIR--ACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELI 84

Query: 148 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSSV 203
            +Y K G    A  + + M        + ++S YA     N A  +F R      + + V
Sbjct: 85  GMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLV 144

Query: 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
            W S+IS Y  +    EA+ LF  MR  GV      LA V+S C+ LG     K +H +A
Sbjct: 145 TWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYA 204

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
            K G  +   V SAL+  Y K G  + A  LF E+K       N +IT ++  G  ++A 
Sbjct: 205 VKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEAL 264

Query: 324 HIF----------RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
            IF          R  PN  ++SW+++I G +  G   EAL+LF  M    +  +  +++
Sbjct: 265 EIFSQLERSGDCPRLRPN--VVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTIS 322

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------- 418
           +V+S CA +++L LG ++   V    + ++ ++   LV+ Y KCG               
Sbjct: 323 TVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERK 382

Query: 419 ------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                              +AL  F++M   G KP  +TF A+LS+C H GLV EG++ F
Sbjct: 383 DLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLF 442

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
           D M  +Y I+P++EHY+CMVDL  RAG L EA  +++ MP   +  +W ++L  C  H +
Sbjct: 443 DQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNN 502

Query: 521 KGLGRKVAERMIELD-PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
             +  + A  +  L   E    Y+ LS+I+A SG WE S+ +R   + K + K PG SW
Sbjct: 503 TEIAEETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSW 561



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 220/487 (45%), Gaps = 87/487 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C    S  +GK +H H L+ G   S L + N L+ MY + G   DA  LFD M  R
Sbjct: 48  VIRACAYMGSFILGKTIHGHVLEMG-FQSHLHVGNELIGMYAKLGRMRDARHLFDRMSVR 106

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK----------- 115
           +  SWN M+  +        +L++F  M     + N  +W  LIS +A+           
Sbjct: 107 SYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMELF 166

Query: 116 ----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                                 ADL A    K IH + +  G +  S + S+L+ +YGK 
Sbjct: 167 GLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKH 226

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF---DRTTD-----TSSVMW 205
           GD N A  +   MK       +ALI+ +A  G  ++A  +F   +R+ D      + V W
Sbjct: 227 GDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSW 286

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
           +++I G+ S   + EAL LF +M+   +L +A T+++VLS C+ L  L  G+++HGH  +
Sbjct: 287 SAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVR 346

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
             ++++++V + L++ Y+K G   +   +F + +  D I  N+MIT              
Sbjct: 347 AVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMIT-------------- 392

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
                            G   +G  + AL+ F  M KL  + D  +  +V+S+C++   +
Sbjct: 393 -----------------GYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLV 435

Query: 386 ELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGYDALALFNE----MRNTGVKPTIITF 440
             G ++F ++        Q+   + +VD   + G     L  E    ++N  V P    +
Sbjct: 436 HEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAG-----LLREASEIVKNMPVAPNACVW 490

Query: 441 TAILSAC 447
            A+L++C
Sbjct: 491 GALLNSC 497



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 102/198 (51%), Gaps = 13/198 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L  C    ++H+G+++H H ++  ++N+ L + N L+ MY +CG   +  ++F++ 
Sbjct: 321 ISTVLSLCAELAALHLGREIHGHVVRAVMVNNIL-VGNGLVNMYAKCGCLKEGHMIFEKT 379

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
            R++  SWN+MI G+   G    +L+ F+ M     + +  ++  ++S  + + L  +  
Sbjct: 380 ERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGL--VHE 437

Query: 124 GKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISGY 181
           G+++   +L    ++      + +V+L G+ G    A++++ NM   P+     AL+   
Sbjct: 438 GRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALL--- 494

Query: 182 ANCGKMNDARRVFDRTTD 199
            N  +M++   + + T  
Sbjct: 495 -NSCRMHNNTEIAEETAS 511


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 183/616 (29%), Positives = 304/616 (49%), Gaps = 59/616 (9%)

Query: 25   KQLHLHFLKKGILNSTLPIANRLLQMYMRCGN--------PTDALLLFDEMPRRNCFSWN 76
            ++L  HFL    L+S L    R +   + C          PTD + +F+ +        N
Sbjct: 687  RRLRFHFLDFDELSSELRTPRRFI-FSLSCSFSNMIKELLPTDPISIFNLLKSYALSPTN 745

Query: 77   AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYGKQIHSHILV- 133
             +           K+ +LF  +P+     WN++I G+++ +  + A+     ++S  L  
Sbjct: 746  IL-----------KANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFG 794

Query: 134  NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
            N L +  +L +        C   ++  +VL +  + D F  +ALI GYA   ++  AR+V
Sbjct: 795  NNLTYPFLLKACARISNVSCTTVHA--RVLKLGFDSDLFVSNALIHGYAGFCELGFARKV 852

Query: 194  FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253
            FD  ++   V WNS+I GY      +E L++F +MR   V  DA T+  V+ AC+ LG  
Sbjct: 853  FDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEW 912

Query: 254  EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
                 +  +  +  V  DV + + L+D Y +R M   A ++F  ++  + +  N MI  Y
Sbjct: 913  GVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGY 972

Query: 314  SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
               G +  A+ +F  MP++ +ISW SMI   SQ G   +A+ LF  M    ++ D+ ++A
Sbjct: 973  GKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVA 1032

Query: 374  SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------------- 419
            SV+SACA+I +L++GE V   +    +++D  +  +L+D YCKCG               
Sbjct: 1033 SVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKR 1092

Query: 420  -------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                                AL LF+ M   GV+PT  TF  +L AC H G+V +G ++F
Sbjct: 1093 DSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYF 1152

Query: 461  DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
            ++M+  Y + PE++HY C+VDL +R+G L  A   I++MP + DV +W  +L     HG+
Sbjct: 1153 ESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGN 1212

Query: 521  KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
              L     ++++E DP N+  YI  S+ +A S  WE    +R +M E +V K P  S + 
Sbjct: 1213 LHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHK-PSASSSV 1271

Query: 581  GIAFNCWFLDTMFLQL 596
             I  +    DT F+++
Sbjct: 1272 EINDSDSSQDTRFVEV 1287


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 179/607 (29%), Positives = 285/607 (46%), Gaps = 97/607 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+    +  G+ +H H    G L++ L ++  L+ +Y+RC     A  +F +MP R
Sbjct: 105 VLKACSALADLCAGRTIHAHAAAVG-LHTDLFVSTALIDLYIRCARFGPAANVFAKMPMR 163

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISGFAK-ADLAALEYGKQI 127
           +  +WNAM+ G+   G    ++     M  +     N   L+S     A   AL  G  +
Sbjct: 164 DVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSV 223

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H++ L   LD                    +  QVL           +AL+  YA C  +
Sbjct: 224 HAYCLRAYLD-------------------QNEEQVL---------IGTALLDMYAKCKHL 255

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVLSA 246
             A RVF   T  + V W+++I G++  +  TEA  LF  M   G+    A+++AS L  
Sbjct: 256 VYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRV 315

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+SL  L  G Q+H    K G+  D+   ++LL  Y+K                      
Sbjct: 316 CASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAK---------------------- 353

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                     G I +A  +F  +  K  IS+ +++ G  QNG   EA  +F  M   +++
Sbjct: 354 ---------AGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            D  ++ S+I AC+++++L+ G      V I GL  +  I  SL+D Y KCG        
Sbjct: 405 PDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQV 464

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +A  LF  M+N G +P  +TF  +++AC H GLV
Sbjct: 465 FDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLV 524

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            EG+ WFD M  +Y I P +EHY CMVDL AR G L+EA   I+ MP +ADV +W ++L 
Sbjct: 525 TEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLG 584

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  LG++V+  + +L PE    ++ LS+IF+ +G +++++ +R I + K   K 
Sbjct: 585 ACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKS 644

Query: 574 PGCSWAD 580
           PGCSW +
Sbjct: 645 PGCSWIE 651



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 132/575 (22%), Positives = 249/575 (43%), Gaps = 120/575 (20%)

Query: 48  LQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL------FNVMPQK 101
           L+ ++  G    A  +FD +P  +  ++NA+I  +   G    ++ L      F V P K
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 102 NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
             F + +L +  A ADL A   G+ IH+H    GL  D  + ++L++LY +C  F  A  
Sbjct: 100 YTFPF-VLKACSALADLCA---GRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAAN 155

Query: 162 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221
           V   M   D    +A+++GYAN G                  M++  I+  +   +    
Sbjct: 156 VFAKMPMRDVVAWNAMLAGYANHG------------------MYHHAIAHLLDMQD---- 193

Query: 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID----DVIVASA 277
                   R G+  +ASTL S+L   +  G L  G  VH + C    +D     V++ +A
Sbjct: 194 --------RGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY-CLRAYLDQNEEQVLIGTA 244

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           LLD Y+K      AC++F  + V + +  + +I  +  C R+ +A ++F+ M        
Sbjct: 245 LLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDM-------- 296

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
             ++ G+             C ++         S+AS +  CA+++ L +G Q+ A +  
Sbjct: 297 --LVEGM-------------CFLSAT-------SVASALRVCASLADLRMGTQLHALLAK 334

Query: 398 IGLDSDQIISTSLVDFYCKCG--------YDALAL------------------------- 424
            G+ +D     SL+  Y K G        +D +A+                         
Sbjct: 335 SGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLV 394

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F +M+   V+P I T  +++ AC H   ++ G+    ++  +  +  E    + ++D++A
Sbjct: 395 FKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIR-GLALETSICNSLIDMYA 453

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL-----DPENA 539
           + G ++ +  + ++MP   D+  W++++ G   +G  GLG++     + +     +P++ 
Sbjct: 454 KCGRIDLSRQVFDKMPAR-DIVSWNTMIAG---YGIHGLGKEATTLFLSMKNQGFEPDDV 509

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
             +I L +  + SG   +     D M  K+ G LP
Sbjct: 510 -TFICLIAACSHSGLVTEGKHWFDTMTHKY-GILP 542



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 121/255 (47%), Gaps = 38/255 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L+ C +   + +G QLH    K GI ++ L   N LL MY + G   +A +LFDE+
Sbjct: 309 VASALRVCASLADLRMGTQLHALLAKSGI-HADLTAGNSLLSMYAKAGLINEATMLFDEI 367

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             ++  S+ A++ G+++ G  E++  +F  M     Q +  +   LI   A + LAAL++
Sbjct: 368 AIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIP--ACSHLAALQH 425

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+  H  +++ GL  ++ + +SL+++Y KCG  + + QV + M   D             
Sbjct: 426 GRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARD------------- 472

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                              V WN+MI+GY  +    EA  LF  M+  G   D  T   +
Sbjct: 473 ------------------IVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICL 514

Query: 244 LSACSSLGFLEHGKQ 258
           ++ACS  G +  GK 
Sbjct: 515 IAACSHSGLVTEGKH 529


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 186/615 (30%), Positives = 290/615 (47%), Gaps = 114/615 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL+ C +  ++   +Q+H  F    I        N LL   +   + T + L+F  +
Sbjct: 24  LLSLLKQCPSTKTL---QQIHTQFTIHSIHK-----PNHLLSQSISLKDFTYSTLIFSHI 75

Query: 68  -PRRNCFSWNAMIEGFMKLGHKEK-SLQLFNVMP----QKNDFSWNMLISGFAKADLAAL 121
            P  N +++N M+       H    +L L++ M       N+F++  +    A A+L  +
Sbjct: 76  TPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVF--LACANLEEI 133

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
              +  H  +   GLD D    +S+V +Y +                             
Sbjct: 134 RMARLAHCEVFKLGLDNDHHTVNSMVTMYFR----------------------------- 164

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTL 240
             CG+   AR+VFD  T+   V WNS++SGY       EA+ +F ++R  +G   D  +L
Sbjct: 165 --CGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSL 222

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SVL AC  LG LE G+ V G   + G+  +  + SAL                      
Sbjct: 223 VSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSAL---------------------- 260

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                    I++YS CG +  ++ IF  MP++  I+WN+ I   +QNG   EA+ LF +M
Sbjct: 261 ---------ISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSM 311

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            +  +  +K +L +V+SACA+I +L+LG+Q+    T  GL  D  ++T+L+D Y KCG  
Sbjct: 312 KENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSL 371

Query: 419 -------------------------------YDALALFNEMRNTG--VKPTIITFTAILS 445
                                           +AL+LF  M + G   +P  ITF ++LS
Sbjct: 372 ESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLS 431

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV EG + FD M   + + P+IEHYSCMVDL +RAG L EA ++IE+MP + D 
Sbjct: 432 ACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDN 491

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
               ++   C    +  +G +V + ++ELDP N+  YI  S I+     W+ ++ +R +M
Sbjct: 492 VTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALM 551

Query: 566 REKHVGKLPGCSWAD 580
           RE  V K PGCSW +
Sbjct: 552 RENGVTKTPGCSWIE 566


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 174/609 (28%), Positives = 277/609 (45%), Gaps = 104/609 (17%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF-DEMPRR 70
           LQ+   H ++  GK++H + L  G LNS L I + L+ MY +C     AL +F D     
Sbjct: 44  LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITS-LINMYSKCNQMNFALSIFSDPTHEI 102

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N F++NA+I GF+  G  E+  + +  M  +             KA L  LE  K+IH  
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI-KKIHGL 161

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           +   GL+ D  +GS+LVN                                Y   G M  A
Sbjct: 162 LFKFGLELDVFIGSALVNC-------------------------------YLKFGLMEHA 190

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           +  F+       V+WN+M++GY    +    L  F +M    V+    T+  VLS  + +
Sbjct: 191 QVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVM 250

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
           G L +G+ +HG A K+G    V V+++L+D Y K                          
Sbjct: 251 GDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGK-------------------------- 284

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                C  IEDA  IF  M  K + SWNS++    Q G     L L   M    ++ D  
Sbjct: 285 -----CKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLV 339

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQ------IISTSLVDFYCKCGY----- 419
           ++ +V+ AC+++++L  G ++   + + GL  D       ++  +++D Y KCG      
Sbjct: 340 TVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAH 399

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +AL +F+ M    +KP  +TF  +LSAC H G
Sbjct: 400 LVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAG 459

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V +G+ +   MK +Y + P IEHY+C++D+  RAG L+EA  L   MP EA+  +W ++
Sbjct: 460 FVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRAL 519

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  H    L    A+R+ EL+PE+  +Y+ +S+++   G +E+   +R  MR+++V 
Sbjct: 520 LAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVR 579

Query: 572 KLPGCSWAD 580
           K PGCSW +
Sbjct: 580 KTPGCSWIE 588



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 134/329 (40%), Gaps = 70/329 (21%)

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           +T  + L A +    L  GK++H +    G ++  +  ++L++ YSK    + A  +FS 
Sbjct: 38  TTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFS- 96

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                                  D  H        ++ ++N++I G   NG P E  + +
Sbjct: 97  -----------------------DPTH------EINVFAFNAIISGFITNGFPEEGFEFY 127

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M    +  DKF+    I AC ++  LE+ +++   +   GL+ D  I ++LV+ Y K 
Sbjct: 128 QKMRNEGVIPDKFTFPCAIKACLDV--LEI-KKIHGLLFKFGLELDVFIGSALVNCYLKF 184

Query: 418 G--------YDALAL-------------------------FNEMRNTGVKPTIITFTAIL 444
           G        ++ L +                         F  M +  V P+  T T +L
Sbjct: 185 GLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVL 244

Query: 445 SACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           S     G +  G+     AMK  Y  D  +   + ++D++ +  C+ +A+ + E M  E 
Sbjct: 245 SVFAVMGDLNNGRIIHGFAMKMGY--DSGVAVSNSLIDMYGKCKCIEDALEIFEMMR-EK 301

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           D+  W+SI+      GD     ++ +RM+
Sbjct: 302 DIFSWNSIVSVHEQCGDHDGTLRLLDRML 330



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 119/247 (48%), Gaps = 30/247 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI------LNSTLPIANRLLQMYMRCGNPTDAL 61
           +  +L +C+   ++  G+++H + +  G+      ++  L + N ++ MY +CG+  DA 
Sbjct: 341 VTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVL-LKNAVIDMYAKCGSMRDAH 399

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKNDFSWNMLISGFAKAD 117
           L+F+ M  ++  SWN MI G+   G+  ++L++F+    V  + ++ ++  ++S  + A 
Sbjct: 400 LVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAG 459

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLG----SSLVNLYGKCGDFNSANQV-LNMMKEPDDF 172
             +     Q  + ++     +D        + ++++ G+ G  + A ++ L M  E +  
Sbjct: 460 FVS-----QGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPV 514

Query: 173 CLSALISG-----YANCGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFH 226
              AL++      +A   ++  A+RVF+   +   S +  S + G +   E  E L + H
Sbjct: 515 VWRALLAACRLHKHAVLAEV-AAQRVFELEPEHCGSYVLMSNVYGAVGRYE--EVLEVRH 571

Query: 227 KMRRNGV 233
            MR+  V
Sbjct: 572 TMRQQNV 578


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 170/611 (27%), Positives = 284/611 (46%), Gaps = 102/611 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C    ++  G+ +H   +K G   +   I   L+ MY +CG   DA+ +F  +
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF-IGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
            + +   W+A+I    + G  E+S++LF++M       N ++   L+S  A  +   L+Y
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS--AATNTGNLQY 433

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+ IH+ +   G + D  + ++LV +Y K G                  C+         
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNG------------------CV--------- 466

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
               +D  ++++   D   + WN+ +SG          L +F+ M   G + +  T  S+
Sbjct: 467 ----HDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISI 522

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L +CS L  + +G+QVH H  K  + D+  V +AL+D Y+K                   
Sbjct: 523 LGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAK------------------- 563

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       C  +EDA   F  +  + L +W  +I   +Q     +AL+ F  M + 
Sbjct: 564 ------------CMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQE 611

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            ++ ++F+LA  +S C++++SLE G+Q+ + V   G  SD  + ++LVD Y KCG     
Sbjct: 612 GVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA 671

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         AL  F  M + G+ P  +TFT ILSAC H 
Sbjct: 672 EALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQ 731

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG++ F++M   + I P ++H +CMVD+  R G  +E  + I++M    +  +W +
Sbjct: 732 GLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWET 791

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L     H +  LG K A ++ EL PE   +YI LS+IFAT G W+    +R +M  K V
Sbjct: 792 VLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGV 851

Query: 571 GKLPGCSWADG 581
            K PGCSW + 
Sbjct: 852 KKEPGCSWVEA 862



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 182/382 (47%), Gaps = 72/382 (18%)

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           PD     +L++ YA C     AR V  +  D   V W ++I G ++     +++ LF +M
Sbjct: 145 PDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEM 204

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
           +  G++ +  TLA+ L ACS    L+ GKQ+H  A K+G++ D+ V SAL+D Y+K    
Sbjct: 205 QNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAK---- 260

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                                      CG IE A  +F  MP ++ ++WN ++ G +Q G
Sbjct: 261 ---------------------------CGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
                L LFC+M +LD++ ++F+L +V+  CAN  +L+ G+ + + +   G + ++ I  
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 409 SLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK-- 464
            LVD Y KCG   DA+ +F  ++    KP I+ ++A+++  D  G  +E  K F  M+  
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIK----KPDIVVWSALITCLDQQGQSEESIKLFHLMRLG 409

Query: 465 --------------------------------WQYHIDPEIEHYSCMVDLFARAGCLNEA 492
                                           W+Y  + ++   + +V ++ + GC+++ 
Sbjct: 410 DTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDG 469

Query: 493 VNLIEQMPFEADVGMWSSILRG 514
             L E M  + D+  W++ L G
Sbjct: 470 TKLYESM-VDRDLISWNAYLSG 490



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 151/624 (24%), Positives = 256/624 (41%), Gaps = 145/624 (23%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ Y + +L+ C +  S+ V K +H   + K ++N    +   L+ +Y +C     A L+
Sbjct: 111 KLKYYSSMLRECASKRSLGVAKAIH-GLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLV 169

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
             +MP R+  SW A+I+G +  G    S+ LF  M  +    N+F+   L +G     L 
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFT---LATGLKACSLC 226

Query: 120 -ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            AL+ GKQ+H+     GL  D  +GS+LV+LY KCG+   A+++   M E +D   + L+
Sbjct: 227 MALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLL 286

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           +GYA  G +                               T  L LF  M    V  +  
Sbjct: 287 NGYAQRGDV-------------------------------TGVLKLFCSMMELDVKCNEF 315

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL +VL  C++   L+ G+ +H    K G   +  +   L+D YSK G+  DA  +F  +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFR------TMPNK----SLIS------------ 336
           K  D ++ + +IT     G+ E++  +F       T+PN+    SL+S            
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 337 ------W-----------NSMIVGLSQNGSPIEALDLFCNMNKLDL-------------- 365
                 W           N+++    +NG   +   L+ +M   DL              
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 366 RMDK-----------------FSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
             D+                 ++  S++ +C+ +  +  G QV A +    LD +  + T
Sbjct: 496 MYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCT 555

Query: 409 SLVDFYCKC---------------------------------GYDALALFNEMRNTGVKP 435
           +L+D Y KC                                 G  AL  F +M+  GVKP
Sbjct: 556 ALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKP 615

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
              T    LS C     ++ GQ+    +    H+  ++   S +VD++A+ GC+ EA  L
Sbjct: 616 NEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVS-DMFVGSALVDMYAKCGCMEEAEAL 674

Query: 496 IEQMPFEADVGMWSSILRGCVAHG 519
            E +    D   W++I+ G   +G
Sbjct: 675 FEAL-IRRDTIAWNTIICGYAQNG 697


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 175/607 (28%), Positives = 291/607 (47%), Gaps = 100/607 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C     +  G+++H   ++ G  +  +  AN L+ MY + G+   A L+F ++P+ 
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVVRTG-YDKDVFTANALVDMYSKLGDIHMAALVFGKVPKT 266

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWNA I G +  GH + +L+L   M       N F+ + ++   A A   A   G+Q
Sbjct: 267 DVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQ 326

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  ++    D D  +G +LV++                               YA  G 
Sbjct: 327 IHGFMIKACADSDDYIGVALVDM-------------------------------YAKYGL 355

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           ++DAR+VF+       ++WN++ISG        E+L LF +MR+ G   + +TLA+VL +
Sbjct: 356 LDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKS 415

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            +SL  +    QVH  A K+G + D  V + L+D+Y K                      
Sbjct: 416 TASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWK---------------------- 453

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    C  +  A  +F    + ++I++ SMI  LSQ     +A+ LF  M +  L 
Sbjct: 454 ---------CNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLE 504

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D F L+S+++ACA++S+ E G+QV A +      +D     +LV  Y KCG        
Sbjct: 505 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLA 564

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                      AL +F  M +  + P  IT T++L AC+H GLV
Sbjct: 565 FSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLV 624

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            E + +F +MK  + ID   EHYSCM+DL  RAG L++A+ L+  MPFEA+  +W ++L 
Sbjct: 625 DEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLA 684

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
               H D  LG+  AE++  L+PE +  ++ L++ +A++G W++ + +R +M++  V K 
Sbjct: 685 ASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKE 744

Query: 574 PGCSWAD 580
           P  SW +
Sbjct: 745 PAMSWVE 751



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 147/568 (25%), Positives = 249/568 (43%), Gaps = 111/568 (19%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNCFSWNAMIEG 81
           +G Q+H   +  G L+  + +AN L+ MY   G   +A  +FDE  R RN  SWN M+  
Sbjct: 118 LGVQVHAVAVSTG-LSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSA 176

Query: 82  FMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           F+K      +++LF  M     + N+F ++ +++    +    LE G+++H+ ++  G D
Sbjct: 177 FVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSR--DLEAGRKVHAMVVRTGYD 234

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            D    ++LV++Y K G                D  ++AL               VF + 
Sbjct: 235 KDVFTANALVDMYSKLG----------------DIHMAAL---------------VFGKV 263

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS--ACSSLGFLEH 255
             T  V WN+ ISG + +  D  AL L  +M+ +G++ +  TL+S+L   A +  G    
Sbjct: 264 PKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFAL 323

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G+Q+HG   K     D  +  AL+D Y+K G+  DA K+F                    
Sbjct: 324 GRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVF-------------------- 363

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                        +P K L+ WN++I G S  G   E+L LFC M K    +++ +LA+V
Sbjct: 364 -----------EWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAV 412

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------------ 417
           + + A++ ++    QV A    IG  SD  +   L+D Y KC                  
Sbjct: 413 LKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNI 472

Query: 418 ---------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                          G DA+ LF EM   G++P     +++L+AC      ++G++    
Sbjct: 473 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 532

Query: 463 M-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
           + K ++  D  +   + +V  +A+ G + +A      +P +  V  WS+++ G   HG  
Sbjct: 533 LIKRKFMTD--VFAGNALVYTYAKCGSIEDADLAFSGLP-DKGVVSWSAMIGGLAQHGHG 589

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIF 549
                V  RM+  D   A  +I L+S+ 
Sbjct: 590 KRALDVFRRMV--DERIAPNHITLTSVL 615



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 204/466 (43%), Gaps = 83/466 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL       S+ +G  +H H LK G+L++     N LL  Y +C  P  A  +FDE 
Sbjct: 7   ISPLLTRYAATQSLFLGAHIHAHLLKSGLLHA---FRNHLLSFYSKCRLPGSARRVFDET 63

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P     SW++++  +       ++L  F  M  +    N+F+  +++     A L     
Sbjct: 64  PDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL----- 118

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+H+  +  GL  D  + ++LV +YG                            G+  
Sbjct: 119 GVQVHAVAVSTGLSGDIFVANALVAMYG----------------------------GF-- 148

Query: 184 CGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            G +++ARRVFD    D ++V WN M+S ++ N+  ++A+ LF +M  +GV  +    + 
Sbjct: 149 -GFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSC 207

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           V++AC+    LE G++VH    + G   DV  A+AL+D YSK                  
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSK------------------ 249

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                         G I  A  +F  +P   ++SWN+ I G   +G    AL+L   M  
Sbjct: 250 -------------LGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 363 LDLRMDKFSLASVIS--ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
             L  + F+L+S++   A A   +  LG Q+   +     DSD  I  +LVD Y K G  
Sbjct: 297 SGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLL 356

Query: 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
            DA  +F  +     +  ++ + A++S C H G   E    F  M+
Sbjct: 357 DDARKVFEWIP----RKDLLLWNALISGCSHGGCHGESLSLFCRMR 398



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 157/377 (41%), Gaps = 69/377 (18%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+S Y+ C     ARRVFD T D   V W+S+++ Y +N    EAL  F  MR  GV  +
Sbjct: 43  LLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCN 102

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
              L  VL      G    G QVH  A   G+  D+ VA+AL+  Y   G   +A ++F 
Sbjct: 103 EFALPIVLKCAPDAGL---GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFD 159

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           E                                 +++ +SWN M+    +N    +A++L
Sbjct: 160 E------------------------------AARDRNAVSWNGMMSAFVKNDRCSDAVEL 189

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    +R ++F  + V++AC     LE G +V A V   G D D   + +LVD Y K
Sbjct: 190 FGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSK 249

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
            G                                   AL L  +M+++G+ P + T ++I
Sbjct: 250 LGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSI 309

Query: 444 LS-ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           L              +       +   D +      +VD++A+ G L++A  + E +P  
Sbjct: 310 LKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIP-R 368

Query: 503 ADVGMWSSILRGCVAHG 519
            D+ +W++++ GC +HG
Sbjct: 369 KDLLLWNALISGC-SHG 384



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 39/247 (15%)

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +++ YS C     A+ +F   P+   +SW+S++   S N  P EAL  F  M    +R
Sbjct: 41  NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVR 100

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            ++F+L  V+    +     LG QV A     GL  D  ++ +LV  Y   G+       
Sbjct: 101 CNEFALPIVLKCAPDAG---LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRV 157

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      DA+ LF EM  +GV+P    F+ +++AC     
Sbjct: 158 FDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRD 217

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           ++ G+K   AM  +   D ++   + +VD++++ G ++ A  +  ++P + DV  W++ +
Sbjct: 218 LEAGRK-VHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVP-KTDVVSWNAFI 275

Query: 513 RGCVAHG 519
            GCV HG
Sbjct: 276 SGCVLHG 282



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C +  +   GKQ+H H +K+  +       N L+  Y +CG+  DA L F  +
Sbjct: 510 LSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFA-GNALVYTYAKCGSIEDADLAFSGL 568

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P +   SW+AMI G  + GH +++L +F  M  +    N  +   ++     A L     
Sbjct: 569 PDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAK 628

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
           G    S   + G+D      S +++L G+ G  + A +++N M
Sbjct: 629 G-YFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM 670


>gi|302774729|ref|XP_002970781.1| hypothetical protein SELMODRAFT_11658 [Selaginella moellendorffii]
 gi|300161492|gb|EFJ28107.1| hypothetical protein SELMODRAFT_11658 [Selaginella moellendorffii]
          Length = 517

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 171/581 (29%), Positives = 275/581 (47%), Gaps = 102/581 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C+   S+H G++LH   L+  +   TL + N L+QMY RCG   +A  +FD+ P
Sbjct: 2   APLLRQCSKQRSLHSGRRLHAQILRHRLDRHTL-LCNLLVQMYGRCGCLDEARSIFDKTP 60

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISGF-AKADLAALEYGK 125
            RN FSW+ MI  + + GH   +L ++  M Q++  + +    +S   A + L  LE GK
Sbjct: 61  ERNLFSWSIMIAAYAQNGHPTFALAVYREMLQRSIHAIDSTTYVSALSACSALGDLETGK 120

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH  IL + L+ D+ LG++L+++Y KCG                  CL           
Sbjct: 121 SIHERILSSKLEIDAFLGTALISMYSKCG------------------CL----------- 151

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
              +A   FD       V+WN+MI+ +  N     AL  FH + R  +  +  TL S L 
Sbjct: 152 --EEAHECFDCVLRKDIVVWNAMIAAFAQNGHPQRALNFFHAIPRGELQPNNLTLVSALD 209

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS L  LE G+++H           +I +S  L      G                   
Sbjct: 210 ACSDLAALEEGRKIHA----------LIESSPELTLGGSMG------------------- 240

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N ++ +Y  CGR  DA+ +F  +  ++++SW SMI   +QNG   +AL+LF    ++D+
Sbjct: 241 -NALVNLYGKCGRAIDARAVFDALRPRTVVSWTSMIAAYAQNGHSDQALELF---QRMDM 296

Query: 366 RMDKFSLASVISACA-NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
             +  +L SV+ AC+ +      G+ + A + + G D   ++ ++LV+ Y K G      
Sbjct: 297 APNGVTLLSVLQACSEHRKGSHAGKTIHAHIRLAGFDGSPLLDSALVNMYGKVGNLDSAM 356

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                        AL+LF+ M   G+    +T   + SAC H G
Sbjct: 357 VVFTQMRERDAITWTAMISSYAQHGHSRQALSLFSSMLLDGIATDAVTLACVSSACSHSG 416

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            VK G  +F +    +   P  EHY  M D+ +RAG L EA +L+  MPF+ D+  W ++
Sbjct: 417 DVKLGWDYFVSSVRDFGERPTFEHYVVMSDMLSRAGRLQEAEDLLRSMPFQPDLVSWRTL 476

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
           L  C  H +  +G++VA+R++EL P +  A + LS+I++ +
Sbjct: 477 LSACSNHNNPHVGKRVADRILELSPSDPAALVLLSNIYSAA 517


>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
          Length = 628

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 150/494 (30%), Positives = 242/494 (48%), Gaps = 64/494 (12%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL   +Q+H+    +G   D    + L+  Y   GD  +A ++   +   +    + L  
Sbjct: 56  ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFG 115

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GY   G +  AR++FD   + +   WN+M++G  +   D E+L LF  MRR G+  D   
Sbjct: 116 GYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRREGMHPDEFG 175

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L SV   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +               
Sbjct: 176 LGSVSRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR--------------- 220

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG +++ + + R +P+ S++S N++I G +QNG    AL+ FC 
Sbjct: 221 ----------------CGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCM 264

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M  + +  D  +  S IS+C+++++L  G+Q+  +V   G+D    + T LV  Y +CG 
Sbjct: 265 MRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 324

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF +M N G +P+ +TF A+L A
Sbjct: 325 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYA 384

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL +EG   F+ M   Y I P ++HY+C+VDL  R+GCL+EA  LI  MP   D  
Sbjct: 385 CSHSGLKEEGMDCFELMTKTYGIQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGV 444

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C    +  +  ++A+R+IELDP ++ +Y+ LS+I ATS  W   S +R  MR
Sbjct: 445 IWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMR 504

Query: 567 EKHVGKLPGCSWAD 580
           + +V K PG SW +
Sbjct: 505 DNNVRKEPGVSWVE 518



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 169/392 (43%), Gaps = 72/392 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L ++C     +   +QLH      G        AN L+  Y   G+ T A  LF+ +
Sbjct: 47  FSHLFRACRALRPL---RQLHAFAATSGAATDRF-TANHLMLAYADLGDLTAARELFERI 102

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
           PRRN  SWN +  G++K G    + +LF+ MP++N  +WN +++G               
Sbjct: 103 PRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFL 162

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                A L  +  G+Q+H++++ +GLD D  +GSSL ++Y +CG
Sbjct: 163 DMRREGMHPDEFGLGSVSRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCG 222

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
                  VL M+                                  S V  N++I+G   
Sbjct: 223 CLQEGEAVLRMLPS-------------------------------LSIVSCNTIIAGRTQ 251

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N +   AL  F  MR  GV  D  T  S +S+CS L  L  G+Q+HG   K GV   V V
Sbjct: 252 NGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPV 311

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--- 331
            + L+  YS+ G   D+ ++F      DT LL+ MI+ Y   G  + A  +F+ M N   
Sbjct: 312 MTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGA 371

Query: 332 -KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
             S +++ +++   S +G   E +D F  M K
Sbjct: 372 EPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 17/198 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC+   ++  G+Q+H   +K G+ +  +P+   L+ MY RCG   D+  +F      +
Sbjct: 281 ISSCSDLAALAQGQQIHGQVMKAGV-DKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSD 339

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLI-----SGFAKADLAALE 122
            F  +AMI  +   GH +K+++LF  M     + +D ++  L+     SG  +  +   E
Sbjct: 340 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 399

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALISGY 181
              + +      G+       + +V+L G+ G  + A   +L+M   PD      L+S  
Sbjct: 400 LMTKTY------GIQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSAC 453

Query: 182 ANCGKMNDARRVFDRTTD 199
                 + A R+  R  +
Sbjct: 454 KTQKNFDMAERIAKRVIE 471


>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
 gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
          Length = 694

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 166/587 (28%), Positives = 279/587 (47%), Gaps = 76/587 (12%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+  G+ +H   L++G +   + +   L+ MY RCG    A  +F  MP RN
Sbjct: 119 LNACIGSRSLSNGRLIHALVLERG-MEGDVVLGTALVTMYGRCGCLESAREIFHRMPERN 177

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFN-----VMPQKNDFSWNMLISGFAKADLAALEYGKQ 126
             SWNAM+       H  ++++LF       M +    S+  +++     +  AL  G++
Sbjct: 178 VVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTRE--ALAEGRR 235

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  I    L     + ++LV +YG+CG    A +V + M+  D    +A+IS YA  G 
Sbjct: 236 IHEMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGL 295

Query: 187 MNDARRVFDRTTDTSS------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
             +   +F R     S      + WN+MI+GY+   +   AL +F +M   G+  +  T 
Sbjct: 296 ACEVVNLFHRMRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTF 355

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            S+LS C S   L  G+ +H   C   VID     S+                       
Sbjct: 356 MSLLSVCDSRALLRQGETIH--RC---VIDQTPELSS----------------------- 387

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            D I+   ++ +Y  CG ++ A+H+F    +++L SWNSMI   + +G   +A DL   M
Sbjct: 388 -DPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERM 446

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
            +  +  D+ +  ++++AC    ++  G+ + AR+   GL+ D +++ +LV+FY KCG  
Sbjct: 447 RREGVLPDRVTFITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCGNL 506

Query: 420 -DALALFNE-------------------------------MRNTGVKPTIITFTAILSAC 447
             A +LF                                 M+  GV+P  ITF  ILSA 
Sbjct: 507 DTATSLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSAS 566

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H G +++G   F +M   + ++  +EHY CM+DL  RAG + EA   +  M  E     
Sbjct: 567 SHAGFLRQGGDDFVSMAVDHELERGVEHYGCMIDLLGRAGRIGEAEYFVSAMRDEDKEVS 626

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
           W ++L  C  HGD+   ++VA  ++E++P+++ AY+ LS+++AT G+
Sbjct: 627 WMTLLSACEVHGDEERAKRVAGSIVEMNPQHSSAYVALSNLYATCGD 673



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 154/566 (27%), Positives = 261/566 (46%), Gaps = 90/566 (15%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ +LA LL++C++   +  GKQ+H       +L S +P+AN ++ MY +C     A+ +
Sbjct: 10  RVTFLA-LLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMAV 68

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDF--SWNMLISGFAK 115
           F EM  R+  SWN  I    + G         KS+QL  + P K  F  + N  I     
Sbjct: 69  FSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGS--- 125

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
               +L  G+ IH+ +L  G++ D VLG++LV +YG+CG                  CL 
Sbjct: 126 ---RSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCG------------------CLE 164

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           +             AR +F R  + + V WN+M++    N    EA+ LF +M    ++E
Sbjct: 165 S-------------AREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVE 211

Query: 236 DAS-TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
               +  +VL+A ++   L  G+++H    +  ++  + VA+AL+  Y + G   DA ++
Sbjct: 212 PTRVSFITVLNAVTTREALAEGRRIHEMIQERQLLSQIEVANALVTMYGRCGGVGDAERV 271

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIF------RTMPNKSLISWNSMIVGLSQNG 348
           FS ++  D +  N MI+ Y+  G   +  ++F      R+M  + +ISWN+MI G  Q G
Sbjct: 272 FSAMERRDLVSWNAMISAYAQSGLACEVVNLFHRMRAERSMAARDVISWNTMITGYVQAG 331

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQII 406
            P  AL +F  M    +R ++ +  S++S C + + L  GE +   V      L SD I+
Sbjct: 332 DPFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRALLRQGETIHRCVIDQTPELSSDPIV 391

Query: 407 STSLVDFYCKCG---------------------------------YDALALFNEMRNTGV 433
           + ++V+ Y KCG                                   A  L   MR  GV
Sbjct: 392 AAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREGV 451

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
            P  +TF  +L+AC   G V++G K   A      ++ +    + +V+ +++ G L+ A 
Sbjct: 452 LPDRVTFITLLNACVAGGAVRQG-KMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTAT 510

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHG 519
           +L   + +  DV  W+ I+ G   +G
Sbjct: 511 SLFGALDYR-DVVSWNGIIAGFAHNG 535


>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
 gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 177/611 (28%), Positives = 291/611 (47%), Gaps = 104/611 (17%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L +++  C    S H+G Q H   LK G + S + I + ++ MY +CG  + A +LFD+
Sbjct: 71  FLNKIVSFCAKSGSFHLGIQAHSTILKLGFI-SNVYICSAVVDMYAKCGEISSARVLFDQ 129

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALE 122
           MP+R   +WN++I G++ +   + +++LF  M +     + FS +  ++G ++  L A E
Sbjct: 130 MPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSSCLAGCSQ--LEARE 187

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G Q+H  IL  GL ++ V+G+SLV++Y KCGD                           
Sbjct: 188 VGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGD--------------------------- 220

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
               ++D+R VFD   + + + W SM++GY    +  EA+ L  +M    +  +  T  S
Sbjct: 221 ----VDDSRLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNS 276

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK-RGMPSDACKLFSELKVY 301
           +LS+ S    L +  QVH    ++G+  +V +A+ L+  YSK      D  K+ S +   
Sbjct: 277 LLSSFSGPDCLSYCLQVHCCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTC 336

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D I  N +I  YS  GR E                               EAL  F  M 
Sbjct: 337 DNIAWNAVIAGYSKLGRHE-------------------------------EALRCFHEMK 365

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---- 417
           +  + +D ++L SV+ A  N S LE G+ + A +   G  S   +   LV  Y +C    
Sbjct: 366 QAGIDIDSYTLTSVVGAIGNSSFLEEGKAMHALIHRTGYISHLNVQNGLVSMYARCGAIG 425

Query: 418 -----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACD 448
                                        G +A+ LF +MR T +KP   TF A+L AC 
Sbjct: 426 DSKRVFWFMEEHDVISWNALLTAFAHHGYGREAVELFEQMRKTEIKPNSSTFLAVLCACS 485

Query: 449 HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
           H G V +G ++FD MK    ++P ++EHY+ +VD F RAG LNEA   I  MP      +
Sbjct: 486 HVGFVDKGIEYFDTMKSDILLEPLKVEHYASLVDTFGRAGYLNEAEAFINSMPIVPAPSV 545

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           + ++L   + HG++ +  + A++++EL P +   Y+ LSS+    G W+ ++ +R +M +
Sbjct: 546 YKALLSASLVHGNREIAARSAKKLLELWPNDPATYVLLSSVLTVDGNWDDAADLRKLMCD 605

Query: 568 KHVGKLPGCSW 578
           + + K PG SW
Sbjct: 606 RGLRKKPGYSW 616



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 143/306 (46%), Gaps = 44/306 (14%)

Query: 215 NNEDTEALL---LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271
           +N++T + +   L  +  R+G L +   L  ++S C+  G    G Q H    K+G I +
Sbjct: 44  SNQNTSSPVDSDLIAEFTRHGSLSNPYFLNKIVSFCAKSGSFHLGIQAHSTILKLGFISN 103

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
           V + SA++D Y+K G                                I  A+ +F  MP 
Sbjct: 104 VYICSAVVDMYAKCG-------------------------------EISSARVLFDQMPQ 132

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           +++++WNS+I G      P  A++LF  M K  + +  FS++S ++ C+ + + E+G QV
Sbjct: 133 RTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSSCLAGCSQLEAREVGTQV 192

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDH 449
              +   GL  + ++ TSLVD Y KCG   D+  +F+ M N  V    IT+T++++    
Sbjct: 193 HGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNRNV----ITWTSMVTGYSQ 248

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL---IEQMPFEADVG 506
                E       M  Q  + P    Y+ ++  F+   CL+  + +   I Q+  E++V 
Sbjct: 249 IEKPDEAMALVKEMVLQ-DLRPNCVTYNSLLSSFSGPDCLSYCLQVHCCIIQLGLESNVY 307

Query: 507 MWSSIL 512
           + ++++
Sbjct: 308 IAATLV 313


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 155/471 (32%), Positives = 236/471 (50%), Gaps = 70/471 (14%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+  YA CG+    R+VFD  +D + V +N MI  Y++N+   + LL+F +M   G   D
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             T   VL ACS    L +G  +HG   KVG+  ++ V + L+  Y K G   +A ++F 
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD 178

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN------------------------- 331
           E+   D +  N+M+  Y+   R +DA  I R M +                         
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV 238

Query: 332 ------------KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
                       K+LISWN MI    +N  P +A+DL+  M K  +  D  + ASV+ AC
Sbjct: 239 LYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPAC 298

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------------------- 419
            ++S+L LG ++   V    L  + ++  SL+D Y +CG                     
Sbjct: 299 GDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWT 358

Query: 420 -------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        +A+ALF EM N+G  P  I F AILSAC H GL+ EG+ +F  M   
Sbjct: 359 SLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDD 418

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           Y I P IEHY+C+VDL  RAG ++EA N+I+QMP E +  +W+++L  C    +  +G  
Sbjct: 419 YRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGIL 478

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            A+ +++L PE +  Y+ LS+I+A +G W++ + IR +M+ K + K PG S
Sbjct: 479 AADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGIS 529


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 174/609 (28%), Positives = 277/609 (45%), Gaps = 104/609 (17%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF-DEMPRR 70
           LQ+   H ++  GK++H + L  G LNS L I + L+ MY +C     AL +F D     
Sbjct: 44  LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITS-LINMYSKCNQMNFALSIFSDPTHEI 102

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           N F++NA+I GF+  G  E+  + +  M  +             KA L  LE  K+IH  
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI-KKIHGL 161

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           +   GL+ D  +GS+LVN                                Y   G M  A
Sbjct: 162 LFKFGLELDVFIGSALVNC-------------------------------YLKFGLMEHA 190

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           +  F+       V+WN+M++GY    +    L  F +M    V+    T+  VLS  + +
Sbjct: 191 QVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVM 250

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
           G L +G+ +HG A K+G    V V+++L+D Y K                          
Sbjct: 251 GDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGK-------------------------- 284

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                C  IEDA  IF  M  K + SWNS++    Q G     L L   M    ++ D  
Sbjct: 285 -----CKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLV 339

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQ------IISTSLVDFYCKCGY----- 419
           ++ +V+ AC+++++L  G ++   + + GL  D       ++  +++D Y KCG      
Sbjct: 340 TVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAH 399

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +AL +F+ M    +KP  +TF  +LSAC H G
Sbjct: 400 LVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAG 459

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V +G+ +   MK +Y + P IEHY+C++D+  RAG L+EA  L   MP EA+  +W ++
Sbjct: 460 FVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRAL 519

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  H    L    A+R+ EL+PE+  +Y+ +S+++   G +E+   +R  MR+++V 
Sbjct: 520 LAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVR 579

Query: 572 KLPGCSWAD 580
           K PGCSW +
Sbjct: 580 KTPGCSWIE 588



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 134/329 (40%), Gaps = 70/329 (21%)

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           +T  + L A +    L  GK++H +    G ++  +  ++L++ YSK    + A  +FS 
Sbjct: 38  TTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFS- 96

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                                  D  H        ++ ++N++I G   NG P E  + +
Sbjct: 97  -----------------------DPTH------EINVFAFNAIISGFITNGFPEEGFEFY 127

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M    +  DKF+    I AC ++  LE+ +++   +   GL+ D  I ++LV+ Y K 
Sbjct: 128 QKMRNEGVIPDKFTFPCAIKACLDV--LEI-KKIHGLLFKFGLELDVFIGSALVNCYLKF 184

Query: 418 G--------YDALAL-------------------------FNEMRNTGVKPTIITFTAIL 444
           G        ++ L +                         F  M +  V P+  T T +L
Sbjct: 185 GLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVL 244

Query: 445 SACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           S     G +  G+     AMK  Y  D  +   + ++D++ +  C+ +A+ + E M  E 
Sbjct: 245 SVFAVMGDLNNGRIIHGFAMKMGY--DSGVAVSNSLIDMYGKCKCIEDALEIFEMMR-EK 301

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           D+  W+SI+      GD     ++ +RM+
Sbjct: 302 DIFSWNSIVSVHEQCGDHDGTLRLLDRML 330



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 56/97 (57%), Gaps = 7/97 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI------LNSTLPIANRLLQMYMRCGNPTDAL 61
           +  +L +C+   ++  G+++H + +  G+      ++  L + N ++ MY +CG+  DA 
Sbjct: 341 VTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVL-LKNAVIDMYAKCGSMRDAH 399

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           L+F+ M  ++  SWN MI G+   G+  ++L++F+ M
Sbjct: 400 LVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRM 436


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 164/571 (28%), Positives = 270/571 (47%), Gaps = 70/571 (12%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +L+ ++R     DA  +FDE P R    W   I G  + G     ++ F  M  + + + 
Sbjct: 51  VLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATP 110

Query: 107 NMLISGFAK---ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
           N  +        A +  +E GK++H  +L NG+  D VL ++++++Y KCG F  A +V 
Sbjct: 111 NAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVF 170

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
             M E D    +  I      G +  + ++FD +    +  WN++ISG + +    +AL 
Sbjct: 171 GAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALS 230

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
              +M + GV+ +  T ++       L   + G+Q+HG      +  D  V S+L+D Y 
Sbjct: 231 HLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYC 290

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF---RTMPNKSLISWNSM 340
           K                               CG +E A  +F     +      +W++M
Sbjct: 291 K-------------------------------CGLLEAAASVFDHWSPLTRDMNFAWSTM 319

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           + G  QNG   EALDLF  M +  +  D+F+L SV +ACAN+  +E G QV   V  +  
Sbjct: 320 VAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWY 379

Query: 401 DSDQIISTSLVDFYCKCG--------YD-------------------------ALALFNE 427
             D  +++++VD Y KCG        +D                         A+ LF  
Sbjct: 380 KLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFER 439

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M    + P  IT   +LSAC H GLV EG+ +F  M+ +Y I P IEHY+C+VDL+ R+G
Sbjct: 440 MTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSG 499

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
            L++A N IE+     +  +W ++L  C  H      +  +E++++L+  +A +Y+ LS+
Sbjct: 500 LLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSN 559

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           I+AT+ +W  +  +R  M+E+ V K PG SW
Sbjct: 560 IYATNNKWHDTFELRVSMQERKVRKQPGRSW 590


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 176/612 (28%), Positives = 300/612 (49%), Gaps = 109/612 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR- 69
           LL++C++  ++ +G+ +H H    G L+  L ++  LL MY +CG+   A  LF+ +   
Sbjct: 113 LLKACSSLQALQLGRLIHTHAHILG-LSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQ 171

Query: 70  -RNCFSWNAMIEGF------MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122
            R+  +WNAMI  F       +  H    +Q   V P  N  +   ++    +A+  AL 
Sbjct: 172 DRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTP--NSSTLVSILPTIGQAN--ALH 227

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            GK IH++ + N   FD+V                    VL           +AL+  YA
Sbjct: 228 QGKAIHAYYIRNFF-FDNV--------------------VLQ----------TALLDMYA 256

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLA 241
            C  +  AR++F+     + V W++MI GY+ ++  ++AL L+  M    G+    +TLA
Sbjct: 257 KCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLA 316

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           ++L AC+ L  L+ GK++H H  K G+  D+                             
Sbjct: 317 TMLRACAQLTDLKRGKKLHCHMIKSGM--DL----------------------------- 345

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           DT + N++I++Y+ CG +++A      M  K  +S++++I G  QNG   +AL +F  M 
Sbjct: 346 DTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQ 405

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
              +     ++ +++ AC+++++L+ G        + G  +D  I  +++D Y KCG   
Sbjct: 406 SSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKIT 465

Query: 419 ------------------------------YDALALFNEMRNTGVKPTIITFTAILSACD 448
                                          +AL+LF E++  G+KP  +T  A+LSAC 
Sbjct: 466 ISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACS 525

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV EG+ WF +M   ++I P + HY CMVDL ARAG L+EA   I++MPF  +V +W
Sbjct: 526 HSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIW 585

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L  C  H +  +G +V++++  L PE    ++ +S+I+++ G W+ ++ IR I R  
Sbjct: 586 GALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHH 645

Query: 569 HVGKLPGCSWAD 580
              K PGCSW +
Sbjct: 646 GYKKSPGCSWVE 657



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 113/497 (22%), Positives = 217/497 (43%), Gaps = 106/497 (21%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADL 118
           +FD++P+ +   WN MI  +   G  ++S+ L+  M Q      +F++  L+   A + L
Sbjct: 63  VFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLK--ACSSL 120

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            AL+ G+ IH+H  + GL  D  + ++L+++Y KCG    A  + N +            
Sbjct: 121 QALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISH---------- 170

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                               D   V WN+MI+ +  +    + +    +M++ GV  ++S
Sbjct: 171 -------------------QDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSS 211

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL S+L        L  GK +H +  +    D+V++ +ALLD Y+K              
Sbjct: 212 TLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAK-------------- 257

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            C  +  A+ IF T+  K+ + W++MI G   + S  +AL L+ 
Sbjct: 258 -----------------CHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYD 300

Query: 359 NMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
           +M  +  L     +LA+++ ACA ++ L+ G+++   +   G+D D  +  SL+  Y KC
Sbjct: 301 DMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKC 360

Query: 418 GY---------------------------------DALALFNEMRNTGVKPTIITFTAIL 444
           G                                   AL +F +M+++G+ P + T  A+L
Sbjct: 361 GIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALL 420

Query: 445 SACDHCGLVKEGQ--KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
            AC H   ++ G     +  ++  +  D  I   + ++D++++ G +  +  + ++M   
Sbjct: 421 PACSHLAALQHGTCCHGYTVVR-GFTNDTSI--CNAIIDMYSKCGKITISREIFDRMQ-N 476

Query: 503 ADVGMWSSILRGCVAHG 519
            D+  W++++ G   HG
Sbjct: 477 RDIISWNTMIIGYGIHG 493



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 127/253 (50%), Gaps = 36/253 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           LA +L++C     +  GK+LH H +K G+ L++T  + N L+ MY +CG   +A+   DE
Sbjct: 315 LATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTT--VGNSLISMYAKCGIMDNAVGFLDE 372

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW--NMLISGFAKADLAALEYG 124
           M  ++  S++A+I G ++ G+ EK+L +F  M       +   M+    A + LAAL++G
Sbjct: 373 MIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHG 432

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
              H + +V G   D+ + ++++++Y KCG    + ++                      
Sbjct: 433 TCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREI---------------------- 470

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                    FDR  +   + WN+MI GY  +    EAL LF +++  G+  D  TL +VL
Sbjct: 471 ---------FDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVL 521

Query: 245 SACSSLGFLEHGK 257
           SACS  G +  GK
Sbjct: 522 SACSHSGLVTEGK 534



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 161/366 (43%), Gaps = 69/366 (18%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR VFD+    S V+WN MI  Y  +    +++ L+  M + GV     T   +L ACSS
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  L+ G+ +H HA  +G+  D+ V++ALL  Y+K                         
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAK------------------------- 154

Query: 310 ITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                 CG +  A+ +F ++   ++ +++WN+MI   S +    + +     M +  +  
Sbjct: 155 ------CGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTP 208

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------- 417
           +  +L S++      ++L  G+ + A         + ++ T+L+D Y KC          
Sbjct: 209 NSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIF 268

Query: 418 ----------------GY-------DALALFNEMRNT-GVKPTIITFTAILSACDHCGLV 453
                           GY       DALAL+++M    G+ PT  T   +L AC     +
Sbjct: 269 NTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDL 328

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           K G+K    M  +  +D +    + ++ ++A+ G ++ AV  +++M    D   +S+I+ 
Sbjct: 329 KRGKKLHCHMI-KSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIIS 386

Query: 514 GCVAHG 519
           GCV +G
Sbjct: 387 GCVQNG 392



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 112/256 (43%), Gaps = 38/256 (14%)

Query: 299 KVYDTILLNTMITVYS-SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           +V D+    T +  Y  S   I+ A+H+F  +P  S++ WN MI   + +G   +++ L+
Sbjct: 36  RVSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLY 95

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
            +M +L +    F+   ++ AC+++ +L+LG  +     I+GL  D  +ST+L+  Y KC
Sbjct: 96  LHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKC 155

Query: 418 G--YDALALFN---------------------------------EMRNTGVKPTIITFTA 442
           G  Y A  LFN                                 +M+  GV P   T  +
Sbjct: 156 GHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVS 215

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           IL        + +G+         +  D  +   + ++D++A+   L  A  +   +  +
Sbjct: 216 ILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQ-TALLDMYAKCHLLFYARKIFNTVNKK 274

Query: 503 ADVGMWSSILRGCVAH 518
            DV  WS+++ G V H
Sbjct: 275 NDV-CWSAMIGGYVLH 289


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 166/604 (27%), Positives = 287/604 (47%), Gaps = 102/604 (16%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           +C+    +  G+Q+H   +K    +    +   LL MY + G+  DA  +FD++  +   
Sbjct: 253 ACSHGEVLDFGRQVHCDVIKMNFQDDPY-VCTSLLTMYAKSGSVEDAKKVFDQVLDKEVE 311

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHS 129
             NAMI  F+  G    +L L+N M       + F+ + L+SG +   + + ++G+ +H+
Sbjct: 312 LRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSV--VGSYDFGRTVHA 369

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            ++   +  +  + S+L+ +Y K                               CG   D
Sbjct: 370 EVIKRSMQSNVAIQSALLTMYYK-------------------------------CGSTED 398

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A  VF    +   V W SMI+G+  N    +AL LF  M + GV  D+  + SV+SA   
Sbjct: 399 ADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLG 458

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  +E G  +HG A K G+  DV VA +L+D YSK G                       
Sbjct: 459 LENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFA--------------------- 497

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                     E A+ +F +MPNK+L++WNSMI   S NG P  +++L   + +    +D 
Sbjct: 498 ----------ESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDS 547

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            S+ +V+ A +++++L  G+ + A    + + SD  +  +L+D Y KCG           
Sbjct: 548 VSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFEN 607

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +A+ LF EM+ +   P  +TF A++++C H G+V+EG
Sbjct: 608 MPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEG 667

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
              F  M+ +Y ++P +EHY+ +VDL  RAG L++A + I  MP +AD  +W  +L  C 
Sbjct: 668 LNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACR 727

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
           AH +  LG  VA+ +++++P     Y+ L +++     W++++ +R  M+ + + K PGC
Sbjct: 728 AHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGC 787

Query: 577 SWAD 580
           SW +
Sbjct: 788 SWIE 791



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/536 (25%), Positives = 237/536 (44%), Gaps = 107/536 (19%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR-NCFSWNAMIEGF 82
           G+Q+H + ++  +      +   L+ MY  C  P +A  LF ++  R N  +WN MI GF
Sbjct: 161 GRQIHGYIIRN-MFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGF 219

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA-----ALEYGKQIHSHILVNGLD 137
           ++ G  EKSL+L+++   +N     ++ + F  A  A      L++G+Q+H         
Sbjct: 220 VENGMWEKSLELYSLAKNEN---CKLVSASFTGAFTACSHGEVLDFGRQVHC-------- 268

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
                                   V+ M  + D +  ++L++ YA  G + DA++VFD+ 
Sbjct: 269 -----------------------DVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV 305

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
            D    + N+MIS +I N    +AL L++KM+      D+ T++S+LS CS +G  + G+
Sbjct: 306 LDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGR 365

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
            VH    K  +  +V + SALL  Y K G   DA  +F  +K  D +   +MI  +    
Sbjct: 366 TVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNR 425

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
           R +D                               ALDLF  M K  ++ D   + SVIS
Sbjct: 426 RFKD-------------------------------ALDLFRAMEKEGVKADSDVMTSVIS 454

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVK- 434
           A   + ++ELG  +       GL+SD  ++ SLVD Y K G+   A  +F+ M N  +  
Sbjct: 455 AGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVA 514

Query: 435 ---------------------PTI---------ITFTAILSACDHCGLVKEGQKWFDAMK 464
                                P I         ++ T +L A      + +G K   A +
Sbjct: 515 WNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKG-KTLHAYQ 573

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
            +  I  +++  + ++D++ + GCL  A  + E MP   ++  W+S++ G  +HG+
Sbjct: 574 IRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMP-RRNLVTWNSMIAGYGSHGN 628



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/540 (23%), Positives = 220/540 (40%), Gaps = 119/540 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C +  +++ G+ +H   +  G L S   IA  L+ MY++CG    AL +FD+M   
Sbjct: 61  LLKTCASLSNLYHGRTIHASIVTMG-LQSDPYIATSLINMYVKCGLLGSALQVFDKMSES 119

Query: 71  -----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGK 125
                +   WN +I+G+ K GH E+ L  F  M    + SW M               G+
Sbjct: 120 RDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRM---QELSWYMA--------------GR 162

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH +I+ N  + D  L ++L+ +Y  C                     S  +  ++  G
Sbjct: 163 QIHGYIIRNMFEGDPYLETALIGMYSSC---------------------SRPMEAWSLFG 201

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           K+ +   +         V WN MI G++ N    ++L L+   +       +++     +
Sbjct: 202 KLENRSNI---------VAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFT 252

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS    L+ G+QVH    K+   DD  V ++LL  Y+K G   DA K+F ++   +  L
Sbjct: 253 ACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVEL 312

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N MI+ +   GR  D                               AL L+  M   + 
Sbjct: 313 RNAMISAFIGNGRAYD-------------------------------ALGLYNKMKAGET 341

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
            +D F+++S++S C+ + S + G  V A V    + S+  I ++L+  Y KCG       
Sbjct: 342 PVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADS 401

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      DAL LF  M   GVK      T+++SA      
Sbjct: 402 VFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLEN 461

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+ G         +  ++ ++     +VD++++ G    A  +   MP   ++  W+S++
Sbjct: 462 VELGH-LIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMP-NKNLVAWNSMI 519



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 102/453 (22%), Positives = 178/453 (39%), Gaps = 107/453 (23%)

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           R T+ S  + NS I   +   + ++AL L  K   + +     T  S+L  C+SL  L H
Sbjct: 15  RQTEVSPSI-NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYH 73

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL----------------- 298
           G+ +H     +G+  D  +A++L++ Y K G+   A ++F ++                 
Sbjct: 74  GRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVI 133

Query: 299 -----------------------------KVYDTILLN----------TMITVYSSCGRI 319
                                        +++  I+ N           +I +YSSC R 
Sbjct: 134 DGYFKYGHFEEGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRP 193

Query: 320 EDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
            +A  +F  + N+S +++WN MI G  +NG   ++L+L+      + ++   S     +A
Sbjct: 194 MEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTA 253

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTII 438
           C++   L+ G QV   V  +    D  + TSL+  Y K G                    
Sbjct: 254 CSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGS------------------- 294

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
                         V++ +K FD +     +D E+E  + M+  F   G   +A+ L  +
Sbjct: 295 --------------VEDAKKVFDQV-----LDKEVELRNAMISAFIGNGRAYDALGLYNK 335

Query: 499 MP---FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ--LSSIFATSG 553
           M       D    SS+L GC   G    GR V   +I+   ++  A IQ  L +++   G
Sbjct: 336 MKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVA-IQSALLTMYYKCG 394

Query: 554 EWEKSSLIRDIMREKHVGKLPGCSWADGIAFNC 586
             E +  +   M+E+ V      +W   IA  C
Sbjct: 395 STEDADSVFYTMKERDV-----VAWGSMIAGFC 422


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 170/610 (27%), Positives = 309/610 (50%), Gaps = 81/610 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMP 68
           LL+SC +   +   KQ+  H    G L     I N+L+   M    G+   A  +F+ + 
Sbjct: 14  LLKSCKSMSQL---KQIQAHIFCFG-LQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIH 69

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYG 124
             + F +N MI+ F+K G    ++ LF  + ++    +++++  ++ G     +  +  G
Sbjct: 70  HPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGC--IGEVREG 127

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           ++IH+ ++  GL+FD  + +SL+++Y + G                      L+ G+   
Sbjct: 128 EKIHAFVVKTGLEFDPYVCNSLMDMYAELG----------------------LVEGFT-- 163

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASV 243
                  +VF+   +  +V WN MISGY+      EA+ ++ +M+  +    + +T+ S 
Sbjct: 164 -------QVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVST 216

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSAC+ L  LE GK++H +      +   I+ +ALLD Y K G  S A ++F  + V + 
Sbjct: 217 LSACAVLRNLELGKEIHDYIANELDLTP-IMGNALLDMYCKCGCVSVAREIFDAMIVKNV 275

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
               +M+T Y  CG+++ A+++F   P++ ++ W +MI G  Q     +A+ LF  M   
Sbjct: 276 NCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIR 335

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            +  DKF + ++++ CA + +LE G+ +   +    +  D ++ST+L++ Y KCG     
Sbjct: 336 GVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKS 395

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +AL LF  M+  G+KP  ITF A+LSAC H 
Sbjct: 396 LEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHA 455

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD---VGM 507
           GLV+EG+K F +M   YHI+P +EHY C +DL  RAG L EA  L++++P + +   V +
Sbjct: 456 GLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPL 515

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           + ++L  C  +G+  +G ++A  + ++   ++  +  L+SI+A++  WE    +R  M++
Sbjct: 516 YGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKD 575

Query: 568 KHVGKLPGCS 577
             + K+PG S
Sbjct: 576 LGIKKVPGYS 585


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 184/678 (27%), Positives = 311/678 (45%), Gaps = 142/678 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MP 68
           +L++C       +G ++H   +K G     + + N L+ MY +CG+   A +LFD   M 
Sbjct: 151 VLKACGALGESRLGAEIHGVAVKCG-YGEFVFVCNALIAMYGKCGDLGGARVLFDGIMME 209

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYG 124
           + +  SWN++I   +  G+  ++L LF  M +     N +++   + G    D + ++ G
Sbjct: 210 KEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVE--DPSFVKLG 267

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
             IH  +L                   K   F             D +  +ALI+ YA C
Sbjct: 268 MGIHGAVL-------------------KSNHF------------ADVYVANALIAMYAKC 296

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G+M DA RVF+       V WN+++SG + N   ++AL  F  M+ +G   D  ++ +++
Sbjct: 297 GRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLI 356

Query: 245 SACSSLGFLEHGKQVHGHACKVGV----------ID---------------------DVI 273
           +A    G L  GK+VH +A + G+          +D                     D+I
Sbjct: 357 AASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLI 416

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVY-------------------------------- 301
             + ++  Y++     +A  LF +++V                                 
Sbjct: 417 SWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYV 476

Query: 302 ------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                 D +L N ++ VY   G I+ A+  F ++ +K ++SW SMI     NG P+EAL+
Sbjct: 477 FKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALE 536

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF ++ + +++ D  ++ S +SA AN+SSL+ G+++   +   G   +  I++SLVD Y 
Sbjct: 537 LFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYA 596

Query: 416 ---------------------------------KCGYDALALFNEMRNTGVKPTIITFTA 442
                                             CG  A+ALF +M +  V P  ITF A
Sbjct: 597 CCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLA 656

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L AC H GL+ EG+++F+ MK+ Y ++P  EHY+CMVDL +R+  L EA + +  MP +
Sbjct: 657 LLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIK 716

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W ++L  C  H +K LG   A+ +++ D EN+  Y  +S+IFA  G W     +R
Sbjct: 717 PSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVR 776

Query: 563 DIMREKHVGKLPGCSWAD 580
             M+   + K PGCSW +
Sbjct: 777 LRMKGNGLKKNPGCSWIE 794



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 139/546 (25%), Positives = 232/546 (42%), Gaps = 105/546 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    ++  G+QLH   LK  +   +  +A +L+ MY +CG+  DA+ +FDEM  R
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKSHL---SAFLATKLVLMYGKCGSLRDAVKVFDEMSER 108

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
             FSWNA++  F+  G   ++++L+  M                KA   L     G +IH
Sbjct: 109 TIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIH 168

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN-MMKEPDDFCLSALISGYANCGKM 187
              +  G      + ++L+ +YGKCGD   A  + + +M E +D                
Sbjct: 169 GVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKED---------------- 212

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
                         +V WNS+IS +++     EAL LF +M+  GV  +  T  + L   
Sbjct: 213 --------------TVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGV 258

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
               F++ G  +HG   K     DV VA+AL+  Y+K G   DA                
Sbjct: 259 EDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDA---------------- 302

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                    GR      +F +M  +  +SWN+++ GL QN    +AL+ F +M     + 
Sbjct: 303 ---------GR------VFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKP 347

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---------- 417
           D+ S+ ++I+A     +L  G++V A     GLDS+  I  +LVD Y KC          
Sbjct: 348 DQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAF 407

Query: 418 ----------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                           GY       +A+ LF +++  G+    +   ++L AC   GL K
Sbjct: 408 ECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GL-K 464

Query: 455 EGQKWFDAMKWQYHID-PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
                 +   + +  D  +I   + +V+++   G ++ A    E +    D+  W+S++ 
Sbjct: 465 SRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIR-SKDIVSWTSMIT 523

Query: 514 GCVAHG 519
            CV +G
Sbjct: 524 CCVHNG 529



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 190/432 (43%), Gaps = 78/432 (18%)

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
           F  + L+  Y  CG + DA +VFD  ++ +   WN+++  ++S+ +  EA+ L+  MR  
Sbjct: 80  FLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVL 139

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           GV  DA T  SVL AC +LG    G ++HG A K G  + V V +AL             
Sbjct: 140 GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNAL------------- 186

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR--TMPNKSLISWNSMIVGLSQNGS 349
                             I +Y  CG +  A+ +F    M  +  +SWNS+I      G+
Sbjct: 187 ------------------IAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGN 228

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
            +EAL LF  M ++ +  + ++  + +    + S ++LG  +   V      +D  ++ +
Sbjct: 229 CLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANA 288

Query: 410 LVDFYCKCGY---------------------------------DALALFNEMRNTGVKPT 436
           L+  Y KCG                                  DAL  F +M+N+G KP 
Sbjct: 289 LIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPD 348

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            ++   +++A    G + +G++   A   +  +D  ++  + +VD++A+  C+    +  
Sbjct: 349 QVSVLNLIAASGRSGNLLKGKE-VHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAF 407

Query: 497 EQMPFEADVGMWSSILRGCVA---HGDK-GLGRKVAERMIELDPENACAYIQLSSIFATS 552
           E M  E D+  W++I+ G      H +   L RKV  + +++DP      + + S+    
Sbjct: 408 ECM-HEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDP------MMIGSVLRAC 460

Query: 553 GEWEKSSLIRDI 564
              +  + IR+I
Sbjct: 461 SGLKSRNFIREI 472



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 120/260 (46%), Gaps = 35/260 (13%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD     +  +L++C+   S +  +++H +  K+ +  + + + N ++ +Y   G+   A
Sbjct: 446 MDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL--ADIMLQNAIVNVYGEVGHIDYA 503

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-LISGF-AKADL 118
              F+ +  ++  SW +MI   +  G   ++L+LF  + Q N    ++ +IS   A A+L
Sbjct: 504 RRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANL 563

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           ++L+ GK+IH  ++  G   +  + SSLV++Y  C                         
Sbjct: 564 SSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACC------------------------- 598

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                 G + ++R++F        ++W SMI+    +    +A+ LF KM    V+ D  
Sbjct: 599 ------GTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHI 652

Query: 239 TLASVLSACSSLGFLEHGKQ 258
           T  ++L ACS  G +  GK+
Sbjct: 653 TFLALLYACSHSGLMVEGKR 672


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 181/667 (27%), Positives = 305/667 (45%), Gaps = 142/667 (21%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIE 80
            +G Q+H   +  G   S + +AN L+ MY   G   DA  +FDE    RN  SWN ++ 
Sbjct: 117 QLGAQVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMS 175

Query: 81  GFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
            ++K      ++Q+F  M     Q  +F ++ +++    +    ++ G+Q+H+       
Sbjct: 176 AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR--NIDAGRQVHA------- 226

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
                                    V+ M  E D F  +AL+  Y   G+++ A  +F++
Sbjct: 227 ------------------------MVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEK 262

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             D+  V WN++ISG + N  D  A+ L  +M+ +G++ +   L+S+L AC+  G  + G
Sbjct: 263 MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLG 322

Query: 257 KQVHGHACK----------VGVID---------------------DVIVASALLDTYSKR 285
           +Q+HG   K          VG++D                     D+I+ +AL+   S  
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 382

Query: 286 GMPSDACKLFSELK---------------------------------------VYDTILL 306
           G   +A  +F  L+                                       ++D  ++
Sbjct: 383 GRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVV 442

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +I  Y  C  + DA  +F    +  +I+  SMI  LSQ      A+ LF  M +  L 
Sbjct: 443 NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE 502

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D F L+S+++ACA++S+ E G+QV A +      SD     +LV  Y KCG        
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                      AL LF  M + G+ P  IT T++L AC+H GLV
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            E +++F++MK  + ID   EHYSCM+DL  RAG L++A+ L+  MPF+A+  +W ++L 
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLG 682

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
               H D  LG+  AE++  L+PE +  ++ L++ +A+SG W + + +R +M++ ++ K 
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE 742

Query: 574 PGCSWAD 580
           P  SW +
Sbjct: 743 PAMSWVE 749



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 204/448 (45%), Gaps = 81/448 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G  LH + LK G L S   + N L+  Y +C  P  A  +FDE+P     SW++++  + 
Sbjct: 23  GAHLHANLLKSGFLAS---LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 84  KLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
             G    ++Q F+ M  +    N+F+  +++     A L     G Q+H+  +  G   D
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQL-----GAQVHAMAMATGFGSD 134

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT-T 198
             + ++LV +YG                            G+   G M+DARRVFD   +
Sbjct: 135 VFVANALVAMYG----------------------------GF---GFMDDARRVFDEAGS 163

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           + ++V WN ++S Y+ N++  +A+ +F +M  +G+       + V++AC+    ++ G+Q
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ 223

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           VH    ++G   DV  A+AL+D Y K G                               R
Sbjct: 224 VHAMVVRMGYEKDVFTANALVDMYVKMG-------------------------------R 252

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           ++ A  IF  MP+  ++SWN++I G   NG    A++L   M    L  + F L+S++ A
Sbjct: 253 VDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKA 312

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPT 436
           CA   + +LG Q+   +     DSD  I   LVD Y K  +  DA+ +F+ M +      
Sbjct: 313 CAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR----D 368

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMK 464
           +I + A++S C H G   E    F  ++
Sbjct: 369 LILWNALISGCSHGGRHDEAFSIFYGLR 396



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 162/378 (42%), Gaps = 69/378 (18%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LIS Y+ C +   ARRVFD   D   V W+S+++ Y +N     A+  FH MR  GV  +
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
              L  VL         + G QVH  A   G   DV VA+AL+  Y   G   DA ++F 
Sbjct: 103 EFALPVVLKCVPD---AQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFD 159

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
           E                                  ++ +SWN ++    +N    +A+ +
Sbjct: 160 E------------------------------AGSERNAVSWNGLMSAYVKNDQCGDAIQV 189

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M    ++  +F  + V++AC    +++ G QV A V  +G + D   + +LVD Y K
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVK 249

Query: 417 CG---------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
            G                                 + A+ L  +M+++G+ P +   ++I
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSI 309

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L AC   G    G++    M  + + D +      +VD++A+   L++A+ + + M    
Sbjct: 310 LKACAGAGAFDLGRQIHGFM-IKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR- 367

Query: 504 DVGMWSSILRGCVAHGDK 521
           D+ +W++++ GC +HG +
Sbjct: 368 DLILWNALISGC-SHGGR 384



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 117/249 (46%), Gaps = 39/249 (15%)

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
           L N +I+ YS C R   A+ +F  +P+   +SW+S++   S NG P  A+  F  M    
Sbjct: 39  LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG 98

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
           +  ++F+L  V+     +   +LG QV A     G  SD  ++ +LV  Y   G+     
Sbjct: 99  VCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDAR 155

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        DA+ +F EM  +G++PT   F+ +++AC   
Sbjct: 156 RVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 215

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
             +  G++   AM  +   + ++   + +VD++ + G ++ A  + E+MP ++DV  W++
Sbjct: 216 RNIDAGRQ-VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNA 273

Query: 511 ILRGCVAHG 519
           ++ GCV +G
Sbjct: 274 LISGCVLNG 282



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C +  +   GKQ+H H +K+  ++      N L+  Y +CG+  DA L F  +
Sbjct: 508 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA-GNALVYTYAKCGSIEDAELAFSSL 566

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P R   SW+AMI G  + GH +++L+LF  M  +    N  +   ++     A L   E 
Sbjct: 567 PERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD-EA 625

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
            +  +S   + G+D      S +++L G+ G  + A +++N M
Sbjct: 626 KRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM 668


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 146/441 (33%), Positives = 240/441 (54%), Gaps = 37/441 (8%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL-LFHKMRRNGVLE 235
           L+S YA    + DARR FD        +++++++  +S++ D E +L L  +M  +  L 
Sbjct: 42  LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAA-VSHSSDPELVLPLLRRMLSDDALR 100

Query: 236 -DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D   LAS+ SA   L  L  G+Q+H H        D +V S+L+D Y K G+P DA K+
Sbjct: 101 PDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKV 160

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           F  + V ++++   +I+ Y+S G   +A  +F++MP   L +W ++I G  + G+   A+
Sbjct: 161 FDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAM 220

Query: 355 DLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
            LF  M + D+R+ D F LA+VI   A++++L LG Q+   V  +G  S  I+  +LVD 
Sbjct: 221 GLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDM 280

Query: 414 YCKC---------------------------------GYDALALFNEMRNTGVKPTIITF 440
           Y KC                                   +  AL+N M   G+KP  +TF
Sbjct: 281 YSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTF 340

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             ++ AC H GLV++G++ FD+MK +Y + P ++HY+C +DL +R+G L+EA  LI  MP
Sbjct: 341 VGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMP 400

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
           +E D   W ++L  C  H D  +  +VA+ ++EL P++   YI LS+++A + +W+  + 
Sbjct: 401 YEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAK 460

Query: 561 IRDIMREKHVGKLPGCSWADG 581
           +R IM E  + K+PG SW + 
Sbjct: 461 VRKIMAEMEIRKVPGYSWVEA 481



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 147/359 (40%), Gaps = 69/359 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L  +     S+ +G+QLH HF         + + + L+ MY +CG P DA  +FD +
Sbjct: 106 LASLASAAGRLRSLRLGRQLHAHFAASPYSADNV-VKSSLIDMYCKCGVPQDARKVFDSI 164

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
             +N   W A+I G+   G   ++L LF  MP    F+W  LISGF K            
Sbjct: 165 GVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFV 224

Query: 116 ----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                                 ADLAAL  G+Q+H  ++  G     ++G++LV++Y KC
Sbjct: 225 EMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKC 284

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
            D +S                               AR VF+  T    + W +++ G  
Sbjct: 285 SDIHS-------------------------------AREVFEGITVRDVISWTTILVGEA 313

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDV 272
            +    E   L+++M   G+  +  T   ++ ACS  G ++ G+Q+     +  G+   V
Sbjct: 314 QHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGV 373

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
              +  LD  S+ G  S+A KL + +         T   + S+C +  D +   R   N
Sbjct: 374 QHYTCYLDLLSRSGYLSEAEKLITTMPYEPD--EATWGALLSACKKHNDTQMCLRVADN 430


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 152/444 (34%), Positives = 229/444 (51%), Gaps = 37/444 (8%)

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           K P    L  L   YA+ G+++ +  +F RT + S   W ++I G+       +AL  + 
Sbjct: 5   KPPAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYA 64

Query: 227 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
           +M   GV  +A T +S+L  C     +E GK +H  A K+G   D+ V + LLD Y++ G
Sbjct: 65  QMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGG 120

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
               A +LF  +     + L  M+T Y+  G ++ A+ +F  M  +  + WN MI G +Q
Sbjct: 121 DVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQ 180

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           NG P EAL LF  M K   + ++ ++ SV+SAC  + +LE G  V + +   G+  +  +
Sbjct: 181 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHV 240

Query: 407 STSLVDFYCKCG---------------------------------YDALALFNEMRNTGV 433
            T+LVD Y KCG                                  +AL LF  M   G+
Sbjct: 241 GTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGL 300

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
            PT ITF  ILSAC H G V EG   F+ MK +Y I+P+IEHY CMV+L  RAG + +A 
Sbjct: 301 HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAY 360

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
            L++ M  E D  +W ++L  C  HG   LG K+ E +++ +  N+  YI LS+I+A  G
Sbjct: 361 ELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVG 420

Query: 554 EWEKSSLIRDIMREKHVGKLPGCS 577
            W+  + +R +M++  V K PGCS
Sbjct: 421 NWDGVARLRTMMKDSGVKKEPGCS 444



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 197/419 (47%), Gaps = 43/419 (10%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQ 100
           ++L + Y   G    ++ LF      + F W A+I G    G  E++L  +  M     +
Sbjct: 13  DKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVE 72

Query: 101 KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
            N F+++ ++       L  +E GK +HS  +  G D D  + + L+++Y + GD  SA 
Sbjct: 73  PNAFTFSSILK------LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQ 126

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           Q+ + M E     L+A+++ YA  G+++ AR +FD   +   V WN MI GY  N    E
Sbjct: 127 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE 186

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL+LF +M +     +  T+ SVLSAC  LG LE G+ VH +    G+  +V V +AL+D
Sbjct: 187 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVD 246

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            YSK G   DA  +F ++   D +  N+MI  Y+                          
Sbjct: 247 MYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYA-------------------------- 280

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIG 399
           + G SQ     EAL LF +M ++ L     +   ++SAC +   +  G  +F ++    G
Sbjct: 281 MXGFSQ-----EALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYG 335

Query: 400 LDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
           ++        +V+   + G+   A +  ++N  ++P  + +  +L AC   G +  G+K
Sbjct: 336 IEPKIEHYGCMVNLLGRAGHVEQA-YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEK 393



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 151/357 (42%), Gaps = 67/357 (18%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  GK LH   +K G  +S L +   LL +Y R G+   A  LFD MP ++  S  AM+ 
Sbjct: 87  IEPGKALHSQAVKLG-FDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLT 145

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF------------------AKA------ 116
            + K G  + +  LF+ M +++   WN++I G+                  AKA      
Sbjct: 146 CYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVT 205

Query: 117 ---------DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
                     L ALE G+ +HS+I  NG+ F+  +G++LV++Y KCG    A  V + + 
Sbjct: 206 VLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 265

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           + D    +++I GYA  G        F +                       EAL LF  
Sbjct: 266 DKDVVAWNSMIVGYAMXG--------FSQ-----------------------EALQLFKS 294

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRG 286
           M R G+     T   +LSAC   G++  G  +      + G+   +     +++   + G
Sbjct: 295 MCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG 354

Query: 287 MPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
               A +L   + +  D +L  T++      G+I   + I   + +++L +  + I+
Sbjct: 355 HVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYIL 411



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 23/204 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G+ +H +    GI    + +   L+ MY +CG+  DA L+FD++  +
Sbjct: 209 VLSACGQLGALESGRWVHSYIENNGI-QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK 267

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +  +WN+MI G+   G  +++LQLF  M +      N+   G   A           HS 
Sbjct: 268 DVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSA---------CGHSG 318

Query: 131 ILVNGLDFDSVLGSS------------LVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSAL 177
            +  G D  + +               +VNL G+ G    A + V NM  EPD      L
Sbjct: 319 WVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTL 378

Query: 178 ISGYANCGKMNDARRVFDRTTDTS 201
           +      GK+    ++ +   D +
Sbjct: 379 LGACRLHGKIALGEKIVELLVDQN 402


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 175/609 (28%), Positives = 296/609 (48%), Gaps = 103/609 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           LL  CN     +   Q+H   +K G   N  L ++N LL+ Y        A +LF+E+P 
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY--GKQI 127
           ++  ++N +I G+ K G   +S+ LF  M Q      +   SG  KA +   ++  G+Q+
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H+  +  G   D+ +G+ +++ Y K       ++VL                        
Sbjct: 273 HALSVTTGFSRDASVGNQILDFYSK------HDRVL------------------------ 302

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
            + R +FD   +   V +N +IS Y   ++   +L  F +M+  G        A++LS  
Sbjct: 303 -ETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIA 361

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL- 306
           ++L  L+ G+Q+H  A         ++A+A                        D+IL  
Sbjct: 362 ANLSSLQMGRQLHCQA---------LLATA------------------------DSILHV 388

Query: 307 -NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N+++ +Y+ C   E+A+ IF+++P ++ +SW ++I G  Q G     L LF  M   +L
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNL 448

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALA 423
           R D+ + A+V+ A A+ +SL LG+Q+ A +   G   +    + LVD Y KCG   DA+ 
Sbjct: 449 RADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQ 508

Query: 424 LFNEM--RN-----------------------------TGVKPTIITFTAILSACDHCGL 452
           +F EM  RN                             +G++P  ++   +L+AC HCG 
Sbjct: 509 VFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGF 568

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V++G ++F AM   Y I P+ +HY+CM+DL  R G   EA  L+++MPFE D  MWSS+L
Sbjct: 569 VEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVL 628

Query: 513 RGCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
             C  H ++ L  + AE++  ++   +A AY+ +S+I+A +GEWEK   ++  MRE+ + 
Sbjct: 629 NACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIK 688

Query: 572 KLPGCSWAD 580
           K+P  SW +
Sbjct: 689 KVPAYSWVE 697



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 134/539 (24%), Positives = 232/539 (43%), Gaps = 80/539 (14%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N +++  +R G  + A  ++DEMP +N  S N MI G +K G    +  LF+ MP +  
Sbjct: 51  SNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTV 110

Query: 104 FSWNMLISGFAKADL--AALEYGKQI---HSHILVNGLDFDSVL-GSSLVNLYGKCGDFN 157
            +W +L+  +A+      A +  +Q+    S  L + + F ++L G +        G  +
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVH 170

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
           +    L     P     + L+  Y    +++ A  +F+   +  SV +N++I+GY  +  
Sbjct: 171 AFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGL 230

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
            TE++ LF KMR++G      T + VL A   L     G+Q+H  +   G   D  V + 
Sbjct: 231 YTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQ 290

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           +LD YSK     +   LF E+   D +  N +I+ YS   + E + H FR M        
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM-------- 342

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
               +G  +                       F  A+++S  AN+SSL++G Q+  +  +
Sbjct: 343 --QCMGFDRRN---------------------FPFATMLSIAANLSSLQMGRQLHCQALL 379

Query: 398 IGLDSDQIISTSLVDFYCKC--------------------------GY-------DALAL 424
              DS   +  SLVD Y KC                          GY         L L
Sbjct: 380 ATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKL 439

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F +MR + ++    TF  +L A      +  G++    +    +++  +   S +VD++A
Sbjct: 440 FTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVDMYA 498

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA---ERMIE--LDPEN 538
           + G + +AV + E+MP    V  W++++    AH D G G        +MIE  L P++
Sbjct: 499 KCGSIKDAVQVFEEMPDRNAVS-WNALIS---AHADNGDGEAAIGAFAKMIESGLQPDS 553



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 112/241 (46%), Gaps = 15/241 (6%)

Query: 237 ASTLASV--LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
           + TLA++  L   S   FL+  ++V     K G   D   ++ +++   +RG  S A K+
Sbjct: 12  SRTLATLRQLRQPSPATFLD-TRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKV 70

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
           + E+   +T+  NTMI+ +   G +  A+ +F  MP++++++W  ++   ++N    EA 
Sbjct: 71  YDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAF 130

Query: 355 DLF---CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-- 409
            LF   C  +   L  D  +  +++  C +        QV A    +G D++  ++ S  
Sbjct: 131 KLFRQMCRSSSCTLP-DHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNV 189

Query: 410 LVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
           L+  YC+     LA  LF E+     +   +TF  +++  +  GL  E    F  M+   
Sbjct: 190 LLKSYCEVRRLDLACVLFEEI----PEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG 245

Query: 468 H 468
           H
Sbjct: 246 H 246



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 5/177 (2%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++  +  S+ +GKQLH   ++ G L +     + L+ MY +CG+  DA+ +F+EM
Sbjct: 455 FATVLKASASFASLLLGKQLHAFIIRSGNLENVFS-GSGLVDMYAKCGSIKDAVQVFEEM 513

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
           P RN  SWNA+I      G  E ++  F  M +      ++ I G   A      +E G 
Sbjct: 514 PDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGT 573

Query: 126 Q-IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
           +   +   + G+       + +++L G+ G F  A ++++ M  EPD+   S++++ 
Sbjct: 574 EYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNA 630


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 161/524 (30%), Positives = 256/524 (48%), Gaps = 44/524 (8%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI---HSHILVNGLDFDSVLGSSLVNLY 150
           +F+ +P  +    N L+   +++        K I   H+   +N    D     SL+   
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPE----KTIFLYHNLRAINAFALDRFSFPSLLKAV 131

Query: 151 GKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
            K   FN   ++  +  +     D F  + LI+ YA+C ++ DAR +FD+     +V WN
Sbjct: 132 SKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWN 191

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
            +I GY  N    +AL LF  MR + +  D+  L +VLSAC   G L +G+ +H      
Sbjct: 192 MIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDN 251

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G   D  + +AL++ Y+  G    A K++  L     I+   M++ Y+  G ++DA+ IF
Sbjct: 252 GYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIF 311

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             M  + L+ W++MI G +++  P EAL LF  M +     D+ ++ SVISAC+++ +L 
Sbjct: 312 DQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALA 371

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------- 419
               +   V   G      ++ +L+D Y KCG                            
Sbjct: 372 QANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFA 431

Query: 420 ------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
                  A+ LF  M+   ++P  +TF  +L AC H GLV+EG+K F +M  ++ I P  
Sbjct: 432 MHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTR 491

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           EHY CMVDL+ RA  L +A+ LIE MPF  +V +W S++  C  HG+  LG   A+R++E
Sbjct: 492 EHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLE 551

Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           L+P++  A + LS+I+A    W    LIR  M  K + K    S
Sbjct: 552 LEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASS 595



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 224/452 (49%), Gaps = 40/452 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++ +   + + G ++H    K G ++    I   L+ MY  C    DA LLFD+M   
Sbjct: 127 LLKAVSKVSAFNHGLEIHGLASKLGFVDDPF-IQTGLIAMYASCRRIMDARLLFDKMCHP 185

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           +  +WN +I+G+ + GH + +L+LF  M   +    ++++     A      L YG+ IH
Sbjct: 186 DAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIH 245

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
             +  NG   DS L ++L+N+Y  CG  + A ++ + +        +A++SGYA  G + 
Sbjct: 246 EFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVK 305

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           DAR +FD+  +   V W++MISGY  +++  EAL LF +M +   + D  T+ SV+SACS
Sbjct: 306 DARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACS 365

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            +G L     +H +  + G    + V +AL+D Y+K                        
Sbjct: 366 HVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAK------------------------ 401

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  CG +  A+ +F  MP K++ISW+SMI   + +G+   A+ LF  M ++++  +
Sbjct: 402 -------CGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPN 454

Query: 369 KFSLASVISACANISSLELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKCGY--DALALF 425
             +   V+ AC +   +E GE++F+  +   G+   +     +VD YC+  +   A+ L 
Sbjct: 455 GVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELI 514

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
             M      P +I + +++SAC   G  + G+
Sbjct: 515 ETM---PFAPNVIIWGSLMSACQVHGEAELGE 543


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 181/617 (29%), Positives = 295/617 (47%), Gaps = 113/617 (18%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C     +  G+ LH + +K+GI +  L + + L  MY +C    DA +LF E+  ++
Sbjct: 228 LEACGVLGELSAGRCLHGYAVKEGIRDCAL-VVSALFSMYSKCDMTEDACILFPELTEKD 286

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQI 127
             SW  +I  + + G   ++++LF  M Q     ++   + ++SG   +  A +  GK  
Sbjct: 287 VVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSS--ANVNRGKAF 344

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H+ I+        ++ +SL+++YGK    + A  V  M+ + DD                
Sbjct: 345 HAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDD---------------- 388

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR---RNGVLEDASTLASVL 244
                            W+ M++GY     D + L L+ +M+    +  L D ++L S +
Sbjct: 389 ---------------ESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAI 433

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           S+CS LG L  G+ VH ++ K            LLD  S                     
Sbjct: 434 SSCSRLGRLRLGQSVHCYSIK-----------CLLDENS--------------------- 461

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           + N++I +Y  CG  E A  IF      + +++WN++I   S  G   +AL L+  M   
Sbjct: 462 ITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTE 521

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
           D++ +  +L +VISACAN+++LE GE + + V  +GL+SD  IST+LVD Y KCG     
Sbjct: 522 DVKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTA 581

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         AL LF+EM    +KP  +TF AILSAC H 
Sbjct: 582 RGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHA 641

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV EG+K F  M   Y ++P ++HY+CMVDL  ++G L EA +L+  MP + D G+W +
Sbjct: 642 GLVDEGRKLFIRMG-GYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGT 700

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  H +  +G +VA++    DP N   YI +S+ + ++ +W++   +RD M+   V
Sbjct: 701 LLSACKVHDNFEMGLRVAKKAFSSDPRNDGYYILMSNSYGSAEKWDEIEKLRDTMKNYGV 760

Query: 571 GKLPGCSWADGIAFNCW 587
            K  G  W+   A + W
Sbjct: 761 EK--GVGWS---AVDVW 772



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 132/553 (23%), Positives = 229/553 (41%), Gaps = 108/553 (19%)

Query: 23  VGKQLHLHFLKKGIL--NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           VG  +H + +K G+L  + ++ +++ L+ MY RCG+  DA+ LFDEM  R+  +W A++ 
Sbjct: 131 VGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVS 190

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
           G ++ G   K +     M +                   A + G + +S  + +GL+   
Sbjct: 191 GCVRNGECGKGICYLVQMIR------------------LAGDSGARPNSRTMESGLEACG 232

Query: 141 VLGSSLVNLYGKCGDFNSANQVLN--MMKEPDDFC---LSALISGYANCGKMNDARRVFD 195
           VLG              SA + L+   +KE    C   +SAL S Y+ C    DA  +F 
Sbjct: 233 VLGEL------------SAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFP 280

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
             T+   V W  +I  Y       EA+ LF +M ++G+  D   ++ VLS   S   +  
Sbjct: 281 ELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNR 340

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           GK  H    +    D V++A                               N++I++Y  
Sbjct: 341 GKAFHAVIIRRNFGDSVLIA-------------------------------NSLISMYGK 369

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD---LRMDKFSL 372
              ++ A  +F  +  +   SW+ M+ G  + G  ++ L+L+  M   D      D  SL
Sbjct: 370 FELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSL 429

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
            S IS+C+ +  L LG+ V        LD +  I+ SL+  Y +CG              
Sbjct: 430 VSAISSCSRLGRLRLGQSVHCYSIKCLLDENS-ITNSLIGMYGRCGNFELACKIFAVAKL 488

Query: 419 --------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                DAL+L+ +M    VKP   T   ++SAC +   ++ G+ 
Sbjct: 489 RRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGEL 548

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
               +K    ++ ++   + +VD++ + G L  A  + + M  + DV  W+ ++ G   H
Sbjct: 549 LHSYVK-NMGLESDVSISTALVDMYTKCGQLGTARGIFDSM-LQRDVVTWNVMISGYGMH 606

Query: 519 GDKGLGRKVAERM 531
           G+     K+   M
Sbjct: 607 GEANQALKLFSEM 619



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 212/516 (41%), Gaps = 78/516 (15%)

Query: 27  LHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG---- 81
           L LH L      S+ P  A +L+  Y   G P  A L F   P  + F WN+++      
Sbjct: 32  LRLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCA 91

Query: 82  --FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
             F       + ++     P +    +   ++  A A+LAAL  G  +HS+ +  GL   
Sbjct: 92  SDFDSALSAHRRMRASGARPSR----FTAPLAASAAAELAALPVGTSVHSYSVKFGL--- 144

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
                         GD + A               S+L+  YA CG + DA ++FD   +
Sbjct: 145 ------------LAGDGSVAVS-------------SSLVYMYARCGSLGDAVKLFDEMVE 179

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRR----NGVLEDASTLASVLSACSSLGFLEH 255
              V W +++SG + N E  + +    +M R    +G   ++ T+ S L AC  LG L  
Sbjct: 180 RDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSA 239

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G+ +HG+A K G+ D  +V SAL   YSK  M  DAC LF EL   D +    +I  Y  
Sbjct: 240 GRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCR 299

Query: 316 CGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQN---GSPIEALDLFCNMNKLDLR 366
            G   +A  +F+ M      P++ L+S     +G S N   G    A+ +  N       
Sbjct: 300 RGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRNFGD---- 355

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCGYDA--L 422
                  SV+ A + IS     E V    T+ G+    D    + +V  YCK G D   L
Sbjct: 356 -------SVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCL 408

Query: 423 ALFNEMRNTGVKPTIITFTAILSA---CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS-- 477
            L+ +M+       +   T+++SA   C   G ++ GQ         Y I   ++  S  
Sbjct: 409 ELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVH-----CYSIKCLLDENSIT 463

Query: 478 -CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
             ++ ++ R G    A  +        DV  W++++
Sbjct: 464 NSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALI 499



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 12/179 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C    ++  G+ LH  ++K   L S + I+  L+ MY +CG    A  +FD M
Sbjct: 530 LITVISACANLAALEHGELLH-SYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSM 588

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
            +R+  +WN MI G+   G   ++L+LF+ M     + N  ++  ++S    A L  ++ 
Sbjct: 589 LQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGL--VDE 646

Query: 124 GKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALIS 179
           G+++   I + G   +  L   + +V+L GK G    A   VL M  +PD      L+S
Sbjct: 647 GRKL--FIRMGGYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLS 703


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 170/610 (27%), Positives = 291/610 (47%), Gaps = 109/610 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+  C    S+   K LH H LK G L S     ++L+  Y++C   T+A  LFDEMP R
Sbjct: 7   LIAQCTNKKSLTTLKSLHTHILKSGSLFSFF--GHKLIDGYIKCSVITEARKLFDEMPNR 64

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  +WN+MI   +  G  +++++L++      V+P  + ++++ +   F  +++     G
Sbjct: 65  HIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLP--DAYTFSAIFKAF--SEMGVSREG 120

Query: 125 KQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           ++ H   +V G +  D  + + +V++Y K G    A  V + + + D    +ALI GY  
Sbjct: 121 QKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQ 180

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G   +A  VF+            M+   I  NE                     TLASV
Sbjct: 181 HGLDGEALEVFE-----------DMVGSRIKPNE--------------------YTLASV 209

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L +C +LG L +GK +HG   K G+   V   ++LL  YSK                   
Sbjct: 210 LVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSK------------------- 250

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       C  +ED+  +F ++   S ++W S IVGL QNG    AL +F  M + 
Sbjct: 251 ------------CNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRC 298

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
            +  + F+L+S++ AC++++ LE GEQ+ A    +G+D ++ +  +L+  Y KC      
Sbjct: 299 SISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKA 358

Query: 418 ---------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      G++AL LF  ++  G++P ++TF +IL AC++ 
Sbjct: 359 RSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNA 418

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG + F  ++  + I+   +HY+CM+DL  RA    EA  LIE+     DV  W +
Sbjct: 419 GLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGK-NPDVIQWRT 477

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  HG+  +  K  ++M++  P +   +I L++I+A++G+W+    ++   R+  +
Sbjct: 478 LLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRL 537

Query: 571 GKLPGCSWAD 580
            K P  SW D
Sbjct: 538 KKTPAMSWVD 547



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 8/199 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C++   +  G+Q+H   +K G+  +   +   L+ +Y +CGN   A  +FD +
Sbjct: 307 LSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKF-VDAALIHLYGKCGNVEKARSVFDSL 365

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
              +  S N MI  + + G   ++L+LF  +     + N  ++  ++     A L  +E 
Sbjct: 366 TELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGL--VEE 423

Query: 124 GKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           G QI S I  N  ++      + +++L G+   F  A  ++   K PD      L++   
Sbjct: 424 GCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGKNPDVIQWRTLLNACK 483

Query: 183 NCGKMNDARRVFDRTTDTS 201
             G++  A +   +  D +
Sbjct: 484 IHGEVEMAEKFMKKMLDQA 502


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 181/667 (27%), Positives = 305/667 (45%), Gaps = 142/667 (21%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIE 80
            +G Q+H   +  G   S + +AN L+ MY   G   DA  +FDE    RN  SWN ++ 
Sbjct: 24  QLGAQVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMS 82

Query: 81  GFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
            ++K      ++Q+F  M     Q  +F ++ +++    +    ++ G+Q+H+       
Sbjct: 83  AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS--RNIDAGRQVHA------- 133

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
                                    V+ M  E D F  +AL+  Y   G+++ A  +F++
Sbjct: 134 ------------------------MVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEK 169

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
             D+  V WN++ISG + N  D  A+ L  +M+ +G++ +   L+S+L AC+  G  + G
Sbjct: 170 MPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLG 229

Query: 257 KQVHGHACK----------VGVID---------------------DVIVASALLDTYSKR 285
           +Q+HG   K          VG++D                     D+I+ +AL+   S  
Sbjct: 230 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 289

Query: 286 GMPSDACKLFSELK---------------------------------------VYDTILL 306
           G   +A  +F  L+                                       ++D  ++
Sbjct: 290 GRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVV 349

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           N +I  Y  C  + DA  +F    +  +I+  SMI  LSQ      A+ LF  M +  L 
Sbjct: 350 NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE 409

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
            D F L+S+++ACA++S+ E G+QV A +      SD     +LV  Y KCG        
Sbjct: 410 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 469

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                      AL LF  M + G+ P  IT T++L AC+H GLV
Sbjct: 470 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 529

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            E +++F++MK  + ID   EHYSCM+DL  RAG L++A+ L+  MPF+A+  +W ++L 
Sbjct: 530 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLG 589

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
               H D  LG+  AE++  L+PE +  ++ L++ +A+SG W + + +R +M++ ++ K 
Sbjct: 590 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE 649

Query: 574 PGCSWAD 580
           P  SW +
Sbjct: 650 PAMSWVE 656



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 69/327 (21%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           MR  GV  +   L  VL         + G QVH  A   G   DV VA+AL+  Y   G 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDA---QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             DA ++F E                                  ++ +SWN ++    +N
Sbjct: 58  MDDARRVFDE------------------------------AGSERNAVSWNGLMSAYVKN 87

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
               +A+ +F  M    ++  +F  + V++AC    +++ G QV A V  +G + D   +
Sbjct: 88  DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 147

Query: 408 TSLVDFYCKCG---------------------------------YDALALFNEMRNTGVK 434
            +LVD Y K G                                 + A+ L  +M+++G+ 
Sbjct: 148 NALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLV 207

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P +   ++IL AC   G    G++    M  + + D +      +VD++A+   L++A+ 
Sbjct: 208 PNVFMLSSILKACAGAGAFDLGRQIHGFM-IKANADSDDYIGVGLVDMYAKNHFLDDAMK 266

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDK 521
           + + M    D+ +W++++ GC +HG +
Sbjct: 267 VFDWMSHR-DLILWNALISGC-SHGGR 291



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C +  +   GKQ+H H +K+  ++      N L+  Y +CG+  DA L F  +
Sbjct: 415 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA-GNALVYTYAKCGSIEDAELAFSSL 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P R   SW+AMI G  + GH +++L+LF  M  +    N  +   ++     A L   E 
Sbjct: 474 PERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD-EA 532

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 166
            +  +S   + G+D      S +++L G+ G  + A +++N M
Sbjct: 533 KRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM 575


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 143/495 (28%), Positives = 261/495 (52%), Gaps = 65/495 (13%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           ALE GK++H HI  +G     V+ + ++ +Y KCG    A +V + M E D    + +++
Sbjct: 102 ALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVN 161

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDAS 238
           GYA  G + +AR +FD   +  S  W +M++GY+  ++  EAL+L+  M+R      +  
Sbjct: 162 GYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIF 221

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T++S ++A +++  +  GK++HGH  + G+  D ++ S+L+D Y K              
Sbjct: 222 TVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGK-------------- 267

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            CG I++A++IF  + +K ++SW SMI    ++    E   LF 
Sbjct: 268 -----------------CGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFS 310

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            +     R ++++ + V++ACA++++ ELG QV   +T +G D     S+SL+D Y KCG
Sbjct: 311 ELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCG 370

Query: 419 Y---------------------------------DALALFNEMRNTGVKPTIITFTAILS 445
                                             +AL  F+ +  +G KP  +TF  +LS
Sbjct: 371 NIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLS 430

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV++G ++F ++  ++ +    +HY+C+VDL AR+G   +  +++ +MP +   
Sbjct: 431 ACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSK 490

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +W+S+L GC  +G+  L  + A+ + +++PEN   Y+ +++I+A +G+WE+   +R  M
Sbjct: 491 FLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRM 550

Query: 566 REKHVGKLPGCSWAD 580
           +E  + K PG SW +
Sbjct: 551 QEIGITKKPGSSWTE 565



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 154/550 (28%), Positives = 252/550 (45%), Gaps = 121/550 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q C+   ++  GK++H H    G +   + I NR+L MY +CG+  DA  +FDEMP R
Sbjct: 93  LIQVCSQTRALEEGKKVHEHIRTSGFVPGIV-IWNRILGMYAKCGSLVDARKVFDEMPER 151

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------------- 117
           +  SWN M+ G+ ++G  E++  LF+ MP+++ +SW  +++G+ K D             
Sbjct: 152 DVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQ 211

Query: 118 ---------------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
                                +  +  GK+IH HI+  GLD D VL SSL+++YGKCG  
Sbjct: 212 RVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCG-- 269

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
                           C+             ++AR +FD+  D   V W SMI  Y  ++
Sbjct: 270 ----------------CI-------------DEARNIFDKIIDKDVVSWTSMIDRYFKSS 300

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
              E   LF ++  +    +  T + VL+AC+ L   E G+QVHG+  +VG       +S
Sbjct: 301 RWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASS 360

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           +L+D Y+K                               CG IE A+H+    P   L+S
Sbjct: 361 SLIDMYTK-------------------------------CGNIESARHVVDGCPKPDLVS 389

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
             S+I G +QNG P EAL  F  + K   + D  +  +V+SAC +   +E G + F  +T
Sbjct: 390 LTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSIT 449

Query: 397 I---IGLDSDQIISTSLVDFYCKCG-YDAL-ALFNEMRNTGVKPTIITFTAILSACDHCG 451
               +   SD    T LVD   + G ++ L ++ +EM    +KP+   + ++L  C   G
Sbjct: 450 EKHDLTHTSDHY--TCLVDLLARSGRFEQLKSVLSEM---PMKPSKFLWASVLGGCSTYG 504

Query: 452 LVKEGQKWFDAMKWQYHIDPEIE-HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM--- 507
            +   +   +A +  + I+PE    Y  M +++A AG   E   + ++M    ++G+   
Sbjct: 505 NIDLAE---EAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRM---QEIGITKK 558

Query: 508 ----WSSILR 513
               W+ I R
Sbjct: 559 PGSSWTEIKR 568



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 181/386 (46%), Gaps = 50/386 (12%)

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL--LLFHKMRRNGVL 234
           L S YA+  + +D ++ FD   +   V+   +       N   EA+  L   K+ R  V 
Sbjct: 23  LSSSYASQKRFSD-KKFFDSKLEDGGVVVERLCRA----NRFGEAIDVLCGQKLLREAVQ 77

Query: 235 -------EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
                    AST  +++  CS    LE GK+VH H    G +  +++ + +L  Y+K G 
Sbjct: 78  LLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGS 137

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
             DA K+F E+   D    N M+  Y+  G +E+A+++F  MP +   SW +M+ G  + 
Sbjct: 138 LVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKK 197

Query: 348 GSPIEALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
             P EAL L+  M ++ + + + F+++S ++A A I  +  G+++   +   GLDSD+++
Sbjct: 198 DQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVL 257

Query: 407 STSLVDFYCKCG---------------------------------YDALALFNEMRNTGV 433
            +SL+D Y KCG                                  +  +LF+E+  +  
Sbjct: 258 WSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCE 317

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           +P   TF+ +L+AC      + G++    M  +   DP     S ++D++ + G +  A 
Sbjct: 318 RPNEYTFSGVLNACADLTTEELGRQVHGYMT-RVGFDPYSFASSSLIDMYTKCGNIESAR 376

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHG 519
           ++++  P + D+   +S++ G   +G
Sbjct: 377 HVVDGCP-KPDLVSLTSLIGGYAQNG 401


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 168/605 (27%), Positives = 295/605 (48%), Gaps = 100/605 (16%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C +     +G ++    ++KG+  +   + + ++   ++ G   +A  +FD MP ++
Sbjct: 137 LKACASSLDYEMGMEIISSAVEKGMEKNRF-VGSSMISFLVKFGKIGEAQRVFDGMPNKD 195

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHS 129
              WN++I G+++ G  + + QLF  M         + ++   +A   +  L+ GK +H 
Sbjct: 196 VVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHG 255

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
           ++L  GL  D ++ +S V++Y K GD  S                               
Sbjct: 256 YVLGLGLGNDILVLTSFVDMYSKMGDIES------------------------------- 284

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR VF +    + V WN+MISG + N    E+  LFH++ R+    D +T+ S+L  CS 
Sbjct: 285 ARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQ 344

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
              L  GK +HG A +     ++I+++A++D YSK                         
Sbjct: 345 TASLATGKILHGCAIR-SFESNLILSTAIVDLYSK------------------------- 378

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                 CG ++ A  +F  M ++++I+W +M+VGL+QNG   +AL LF  M +  +  + 
Sbjct: 379 ------CGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANS 432

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            +  S++ +CA++ SL+ G  +   +  +G   D +  T+LVD Y KCG           
Sbjct: 433 VTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSH 492

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                  Y A+ ++++M   G+KP   TF ++LSAC H  LV++
Sbjct: 493 GSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQ 552

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G   F++M+  ++I P  +HY+C+VDL +RAG   EA  LIE+MPF+    +  ++L GC
Sbjct: 553 GISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGC 612

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             H +  LG + +++++ LD  N   YI LS+I+A +  W+K   IR +MR + + K PG
Sbjct: 613 RTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPG 672

Query: 576 CSWAD 580
            S  +
Sbjct: 673 YSLVE 677



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 141/565 (24%), Positives = 251/565 (44%), Gaps = 104/565 (18%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +A +L++ Y    +   A  +FD+  +      NAM+ G+++ G   ++L+LF +M  +N
Sbjct: 66  VATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRN 125

Query: 103 DFSWNMLISGFA-KADLAALEY--GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 159
               +     FA KA  ++L+Y  G +I S  +  G++ +  +GSS+++   K G    A
Sbjct: 126 -LEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEA 184

Query: 160 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
            +V + M   D  C +++I GY   G        FD                        
Sbjct: 185 QRVFDGMPNKDVVCWNSIIGGYVQAG-------CFD------------------------ 213

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
            A  LF +M  +G+     T+ S++ AC  +G L+ GK +HG+   +G+ +D++V ++ +
Sbjct: 214 VAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFV 273

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
           D YSK                                G IE A+ +F  MP ++L+SWN+
Sbjct: 274 DMYSK-------------------------------MGDIESARWVFYKMPTRNLVSWNA 302

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           MI G  +NG   E+ DLF  + +     D  ++ S++  C+  +SL  G ++     I  
Sbjct: 303 MISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATG-KILHGCAIRS 361

Query: 400 LDSDQIISTSLVDFYCKCGY---------------------------------DALALFN 426
            +S+ I+ST++VD Y KCG                                  DAL LF 
Sbjct: 362 FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFA 421

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
           +M+  G+    +TF +++ +C H G +K G+     + ++     +I + + +VD++A+ 
Sbjct: 422 QMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHL-FRLGFAFDIVNMTALVDMYAKC 480

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQ 544
           G +N A  +        DV +W+S++ G   HG       +  +MIE  L P N   ++ 
Sbjct: 481 GKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKP-NQTTFLS 539

Query: 545 LSSIFATSGEWEKSSLIRDIMREKH 569
           L S  + S   E+   + + M   H
Sbjct: 540 LLSACSHSRLVEQGISLFNSMERDH 564



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 124/254 (48%), Gaps = 40/254 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LLQ C+   S+  GK LH   ++     S L ++  ++ +Y +CG+   A  +F+ M
Sbjct: 335 IVSLLQGCSQTASLATGKILHGCAIRS--FESNLILSTAIVDLYSKCGSLKQATFVFNRM 392

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             RN  +W AM+ G  + GH E +L+LF  M ++    N  ++  L+   + A L +L+ 
Sbjct: 393 KDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVH--SCAHLGSLKR 450

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+ IH H+   G  FD V  ++LV++Y KCG                             
Sbjct: 451 GRSIHGHLFRLGFAFDIVNMTALVDMYAKCG----------------------------- 481

Query: 184 CGKMNDARRVFDR-TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             K+N A R+F   +     V+WNSMI+GY  +    +A+ ++HKM   G+  + +T  S
Sbjct: 482 --KINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLS 539

Query: 243 VLSACSSLGFLEHG 256
           +LSACS    +E G
Sbjct: 540 LLSACSHSRLVEQG 553



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 132/299 (44%), Gaps = 41/299 (13%)

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           Q++      D F  + L+  Y++   +  AR VFD+      ++ N+M+ GY+ +    E
Sbjct: 54  QIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRE 113

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
            L LF  MR   +  D+ +    L AC+S    E G ++   A + G+  +  V S+++ 
Sbjct: 114 TLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMIS 173

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
              K G   +A ++F  +   D +                                WNS+
Sbjct: 174 FLVKFGKIGEAQRVFDGMPNKDVV-------------------------------CWNSI 202

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           I G  Q G    A  LF  M+   ++    ++ S+I AC  I +L+LG+ +   V  +GL
Sbjct: 203 IGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGL 262

Query: 401 DSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPT--IITFTAILSACDHCGLVKE 455
            +D ++ TS VD Y K G    A  +F +M      PT  ++++ A++S C   GLV E
Sbjct: 263 GNDILVLTSFVDMYSKMGDIESARWVFYKM------PTRNLVSWNAMISGCVRNGLVGE 315



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 124/310 (40%), Gaps = 66/310 (21%)

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           K  H       +  D  VA+ L+  Y             S+L+                 
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAY-------------SDLR----------------- 78

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
             +E A+++F        +  N+M+ G  Q+G   E L+LF  M   +L +D  S    +
Sbjct: 79  -SLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFAL 137

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD-------- 420
            ACA+    E+G ++ +     G++ ++ + +S++ F  K G        +D        
Sbjct: 138 KACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVV 197

Query: 421 -----------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                            A  LF EM  +G+KP+ IT T+++ AC   G +K G K     
Sbjct: 198 CWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLG-KCMHGY 256

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
                +  +I   +  VD++++ G +  A  +  +MP    V  W++++ GCV +G  G 
Sbjct: 257 VLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVS-WNAMISGCVRNGLVGE 315

Query: 524 GRKVAERMIE 533
              +  R++ 
Sbjct: 316 SFDLFHRLVR 325


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/423 (35%), Positives = 227/423 (53%), Gaps = 35/423 (8%)

Query: 193 VFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
           +F++  D ++V  WNS+I+    + +  EAL  F  MR+  +  + ST    + +CS+L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
            L  G+Q H  A   G   D+ V+SAL+D YSK G   DA  LF E+   + +   +MIT
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRMDKF 370
            Y        A  +F  M  + +ISWNS+I   +QNG   E++++F  M K  ++  +  
Sbjct: 151 GYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV 210

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------- 419
           +L++V+ ACA+  S  LG+ +  +V  +GL+S+  + TS++D YCKCG            
Sbjct: 211 TLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 270

Query: 420 ----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                 +AL +F EM   GVKP  ITF ++L+AC H GL++EG 
Sbjct: 271 REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW 330

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
            WF AM  ++ ++P +EHY CMVDL  RAG L EA +LI+ M    D  +W ++L  C  
Sbjct: 331 HWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRM 390

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           H +  LG   A ++ ELDP+N   Y+ LS+I+A +G WE    +R +M+   + K PG S
Sbjct: 391 HKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFS 450

Query: 578 WAD 580
             D
Sbjct: 451 LVD 453



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 222/464 (47%), Gaps = 52/464 (11%)

Query: 36  ILNSTLPIANRLLQMYMR--CGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQ 93
           I NST  +     ++Y R    NP    L    + + N FSWN++I    + G   ++L+
Sbjct: 3   ISNSTSVVITFSWKIYRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALR 62

Query: 94  LFNVM------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 147
            F+ M      P ++ F   +     + + L  L  G+Q H   L+ G + D  + S+LV
Sbjct: 63  AFSSMRKLSLKPNRSTFPCAIK----SCSALLDLHSGRQAHQQALIFGFEPDLFVSSALV 118

Query: 148 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
           ++Y KCG+   A  + + +   +    +++I+GY      + A RVFD   +   + WNS
Sbjct: 119 DMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNS 178

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           +I+ Y  N   TE++ +FH+M ++G +  +A TL++VL AC+  G    GK +H    K+
Sbjct: 179 IIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM 238

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
           G+  +V V ++++D Y K                               CG++E A+  F
Sbjct: 239 GLESNVFVGTSIIDMYCK-------------------------------CGKVEMARKAF 267

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
             M  K++ SW++M+ G   +G   EAL++F  MN   ++ +  +  SV++AC++   LE
Sbjct: 268 DRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLE 327

Query: 387 LGEQVFARVTIIGLDSDQIIS--TSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAIL 444
            G   F  ++    D +  +     +VD   + GY   A F+ ++   ++P  + + A+L
Sbjct: 328 EGWHWFKAMS-HEFDVEPGVEHYGCMVDLLGRAGYLKEA-FDLIKGMKLRPDFVVWGALL 385

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAG 487
            AC     V  G+    A K  + +DP+   +Y  + +++A AG
Sbjct: 386 GACRMHKNVDLGE--ISARK-LFELDPKNCGYYVLLSNIYADAG 426



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 138/253 (54%), Gaps = 14/253 (5%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           ++SC+    +H G+Q H   L  G     L +++ L+ MY +CG   DA  LFDE+  RN
Sbjct: 83  IKSCSALLDLHSGRQAHQQALIFG-FEPDLFVSSALVDMYSKCGELRDARTLFDEISHRN 141

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHI 131
             SW +MI G+++     ++L++F+ M +++  SWN +I+ +A+  ++  E  +  H  +
Sbjct: 142 IVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMST-ESMEIFHRMV 200

Query: 132 LVNGLDFDSVLGSSLV--------NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
               +++++V  S+++           GKC      +QV+ M  E + F  +++I  Y  
Sbjct: 201 KDGEINYNAVTLSAVLLACAHSGSQRLGKC----IHDQVIKMGLESNVFVGTSIIDMYCK 256

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CGK+  AR+ FDR  + +   W++M++GY  +    EAL +F++M   GV  +  T  SV
Sbjct: 257 CGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSV 316

Query: 244 LSACSSLGFLEHG 256
           L+ACS  G LE G
Sbjct: 317 LAACSHAGLLEEG 329


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 185/676 (27%), Positives = 303/676 (44%), Gaps = 146/676 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLK-KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L SC+   S+   +++H   ++   I+   L + N L+ MY +CG+  +A  +FD +  
Sbjct: 150 VLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKN 209

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGK 125
           R+  SW +MI  +   G  +++L L+  M     Q +  ++   +    K     L  GK
Sbjct: 210 RDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTK-----LVDGK 264

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH+ I+ + ++                                 DF  SALI+ YA CG
Sbjct: 265 AIHARIVSSNME--------------------------------SDFVGSALINMYARCG 292

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            ++ AR+ F++  +   V W S+++ Y+      EAL L+ +M   GV  D  T  + L 
Sbjct: 293 DVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALG 352

Query: 246 ACSSLGFLEHGKQVHGHA------------------CKVGVID-------------DVIV 274
           AC+SLG L+ GK +H                      K G +D             +V  
Sbjct: 353 ACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYC 412

Query: 275 ASALLDTYSKRGMPSDACKLFSEL-----------------------------KVYDTI- 304
            +A++  Y++ G   +A +L+ ++                             K++  + 
Sbjct: 413 WTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVE 472

Query: 305 ---------LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                    + N ++T+Y+ CG +E AK  F     K L+SWN+MI   +Q+G   EALD
Sbjct: 473 NSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALD 532

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFY 414
           L+  M    +  D+ ++AS +SACA   SL+LG ++ +RV       S  ++ T+LV+ Y
Sbjct: 533 LYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMY 592

Query: 415 CKCGY---------------------------------DALALFNEMRNTGVKPTIITFT 441
            +CG                                    L L+ EM   G++P  ITFT
Sbjct: 593 GRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFT 652

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           +IL  C H GL+  G + F  M+ ++ + P  EH+ CMVDL  R+G L +A  L+E MP+
Sbjct: 653 SILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPY 712

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           + D   W ++L  C  H D    ++ A R+ ELDPEN   Y  LSSIF  +G  +++  +
Sbjct: 713 QPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEV 772

Query: 562 RDIMREKHVGKLPGCS 577
           +  M+E  + K PG S
Sbjct: 773 QLSMKEMGLKKPPGQS 788



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 147/637 (23%), Positives = 264/637 (41%), Gaps = 146/637 (22%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ++    LLQ C    S+  GK +H H L+ G   +   + N L+QMY  CG    A   F
Sbjct: 42  VELYDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQF-LGNLLIQMYGNCGEIHLARAAF 100

Query: 65  DEMPRRNCFS-WNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA 119
                    + +N M+  + K G   ++L+L++ M    P+ +  ++ +++   +   + 
Sbjct: 101 QNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSA--VG 158

Query: 120 ALEYGKQIHSHIL-VNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           +L   ++IH+ I+    +  D++ L ++LVN+YGKCG    A +V + +K  D    +++
Sbjct: 159 SLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSM 218

Query: 178 ISGYAN--------------------------------CGKMNDARRV------------ 193
           IS YAN                                C K+ D + +            
Sbjct: 219 ISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESD 278

Query: 194 ---------FDRTTDTSS-------------VMWNSMISGYISNNEDTEALLLFHKMRRN 231
                    + R  D SS             V W S+++ Y+      EAL L+ +M   
Sbjct: 279 FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHE 338

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           GV  D  T  + L AC+SLG L+ GK +H    + G    ++V +ALL            
Sbjct: 339 GVHADGVTYVTALGACASLGALKEGKAIHSRVFECG-FQSLVVHTALL------------ 385

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSP 350
                              T+Y+ CG ++ A+ +F R    +++  W +MI   +Q G  
Sbjct: 386 -------------------TMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHT 426

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
            EAL+L+  M     R ++++ ++V++AC++   LE G ++   V    L S+  +  +L
Sbjct: 427 QEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNAL 486

Query: 411 VDFYCKC---------------------------------GYDALALFNEMRNTGVKPTI 437
           V  Y KC                                 G +AL L+  M + GV P  
Sbjct: 487 VTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDE 546

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           +T  + LSAC   G ++ G++    +         +   + +V+++ R G L  A ++ E
Sbjct: 547 VTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFE 606

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
            M  + DV  W+++     A+  +G   +V +  +E+
Sbjct: 607 DMG-QRDVLSWTAMTS---AYAQQGHADQVLDLYLEM 639



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 159/414 (38%), Gaps = 117/414 (28%)

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
           RR+G +E    L   L  C  LG L  GK VH H               LL T   R   
Sbjct: 37  RRHGYVELYDEL---LQQCGRLGSLAEGKLVHRH---------------LLRTGHGR--- 75

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQN 347
                        +  L N +I +Y +CG I  A+  F+   + K++  +N M+    +N
Sbjct: 76  -------------NQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVACYNQMLSAYGKN 122

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII- 406
           G    AL+L+  M +     DK +   V+ +C+ + SL    ++ A +    +++ QII 
Sbjct: 123 GLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASI----IEAPQIIR 178

Query: 407 -----STSLVDFYCKCGY---------------------------------DALALFNEM 428
                  +LV+ Y KCG                                  +AL L+ +M
Sbjct: 179 DNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQM 238

Query: 429 RNTGVKPTIITFTAILSACD-------------------------------HCGLVKEGQ 457
              G++P  ITFT+ L AC                                 CG V   +
Sbjct: 239 DADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDFVGSALINMYARCGDVSSAR 298

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE---ADVGMWSSILRG 514
           + F+ ++     +  +  ++ ++  + +     EA++L  +M  E   AD   + + L  
Sbjct: 299 QAFEKIQ-----NKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGA 353

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           C + G    G+ +  R+ E   ++   +  L +++A  GE + +  + + +R+K
Sbjct: 354 CASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELDAARAVFNRVRQK 407



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 39/249 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L +C    S+ +G+++H   LK     S+L +   L+ MY RCG    A  +F++M
Sbjct: 549 IASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDM 608

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAA--- 120
            +R+  SW AM   + + GH ++ L L+  M     + N+ ++  ++ G + A L A   
Sbjct: 609 GQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGV 668

Query: 121 ---LEYGKQ-----IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDD 171
              LE   +     I  H L             +V+L G+ G    A  ++  M  +PD 
Sbjct: 669 ECFLEMQSEHEVVPIREHFLC------------MVDLLGRSGRLRDAEALVESMPYQPDS 716

Query: 172 FCLSALISGYANCGKMND-------ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224
               A ++   +C   +D       ARRV +   + +S +++ + S + +     EAL +
Sbjct: 717 V---AWLTVLGSCKTHSDADTAKRAARRVKELDPENTS-LYSLLSSIFTAAGLPQEALEV 772

Query: 225 FHKMRRNGV 233
              M+  G+
Sbjct: 773 QLSMKEMGL 781


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 182/605 (30%), Positives = 292/605 (48%), Gaps = 89/605 (14%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
            KQLH  F++   L+ T   A+ ++ +Y       +ALLLF  +      +W ++I  F 
Sbjct: 24  AKQLHAQFIRTQSLSHTS--ASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81

Query: 84  KLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
                 K+L  F  M      P  N F  ++L S     DL    +G+ +H  I+  G+D
Sbjct: 82  DQSLFSKALASFVEMRASGRCPDHNVFP-SVLKSCTMMMDL---RFGESVHGFIVRLGMD 137

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---------PDDFCLSALISGYANCGKMN 188
            D   G++L+N+Y K     S   V N+  E          +D      I  +     ++
Sbjct: 138 CDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG----ID 193

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
             RRVF+       V +N++I+GY  +    +AL +  +M    +  D+ TL+SVL   S
Sbjct: 194 SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFS 253

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
               +  GK++HG+  + G+  DV + S+L+D Y+K                        
Sbjct: 254 EYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK------------------------ 289

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                    RIED++ +F  +  +  ISWNS++ G  QNG   EAL LF  M    ++  
Sbjct: 290 -------SARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPG 342

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
             + +SVI ACA++++L LG+Q+   V   G  S+  I+++LVD Y KCG          
Sbjct: 343 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                  ++A++LF EM+  GVKP  + F A+L+AC H GLV E
Sbjct: 403 RMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDE 462

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
              +F++M   Y ++ E+EHY+ + DL  RAG L EA N I +M  E    +WS++L  C
Sbjct: 463 AWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSC 522

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             H +  L  KVAE++  +D EN  AY+ + +++A++G W++ + +R  MR+K + K P 
Sbjct: 523 SVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPA 582

Query: 576 CSWAD 580
           CSW +
Sbjct: 583 CSWIE 587



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 21/262 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + ++ +C    ++H+GKQLH + L+ G   S + IA+ L+ MY +CGN   A  +FD M
Sbjct: 346 FSSVIPACAHLATLHLGKQLHGYVLRGG-FGSNIFIASALVDMYSKCGNIKAARKIFDRM 404

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              +  SW A+I G    GH  +++ LF  M ++    N  ++  +++  +   L    +
Sbjct: 405 NVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAW 464

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA-NQVLNMMKEPDDFCLSALISGYA 182
           G   +S   V GL+ +    +++ +L G+ G    A N +  M  EP     S L+S  +
Sbjct: 465 G-YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCS 523

Query: 183 NCGKMNDARRVFDR--TTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               +  A +V ++  T D+ ++  +  M + Y SN    E   L  +MR+ G+ +    
Sbjct: 524 VHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKP-- 581

Query: 240 LASVLSACSSLGFLEHGKQVHG 261
                 ACS   ++E   + HG
Sbjct: 582 ------ACS---WIEMKNKTHG 594


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 285/609 (46%), Gaps = 103/609 (16%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L  L+  C +      G  +H   L+   L+S++ + N L+ MY   G  +DA  LF  M
Sbjct: 551  LCSLMSVCASSDHFSHGSGIHSLCLRSS-LDSSVTVINALVNMYSAAGKLSDAEFLFWNM 609

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSL----QLFNVMPQKNDFSWNMLISGFAKADLAALEY 123
             RR+  SWN MI  +++  +   +L    QLF+     N  +++  +   A +   AL  
Sbjct: 610  SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALG--ACSSPGALID 667

Query: 124  GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            GK +H+ +L   L  + ++G+SL+ +YGK                               
Sbjct: 668  GKMVHAIVLQLSLQRNLLVGNSLITMYGK------------------------------- 696

Query: 184  CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            C  M DA +VF        V +N +I GY    + T+A+ +F  MR  G+  +  T+ ++
Sbjct: 697  CNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 756

Query: 244  L-SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
              S  SS     +G+ +H +  + G + D  VA                           
Sbjct: 757  HGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVA--------------------------- 789

Query: 303  TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                N++IT+Y+ CG +E + +IF ++ NK+++SWN++I    Q G   EAL LF +M  
Sbjct: 790  ----NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQH 845

Query: 363  LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
               ++D+  LA  +S+CA+++SLE G Q+       GLDSD  +  + +D Y KCG    
Sbjct: 846  AGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDE 905

Query: 420  ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                          +A   F +M  TG KP  +TF A+LSAC H
Sbjct: 906  MLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSH 965

Query: 450  CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
             GLV +G  ++++M   + + P I+H  C+VDL  R G   EA   IE+MP   +  +W 
Sbjct: 966  AGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWR 1025

Query: 510  SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
            S+L     H +  +GRK A++++ELDP +  AY+ LS+++AT+  W     +R  M+  +
Sbjct: 1026 SLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTIN 1085

Query: 570  VGKLPGCSW 578
            + K P CSW
Sbjct: 1086 INKRPACSW 1094



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 244/534 (45%), Gaps = 60/534 (11%)

Query: 8   LARLLQSCNTH---HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           LA L+ +C        I  G  +H    + G++ +   I   LL +Y   G  +DA  LF
Sbjct: 346 LASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVY-IGTALLHLYGSRGIVSDAQRLF 404

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSWNMLISGFAKADL 118
            EMP RN  SW A++      G+ E++L+ +  M +       N F+  + + G  + ++
Sbjct: 405 WEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEV 464

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L    Q+ S ++V+GL     + +SL+ ++G                           
Sbjct: 465 PGL----QVASQVIVSGLQNQVSVANSLITMFG--------------------------- 493

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
               N G+++DA ++FDR  +  ++ WN+MIS Y      ++  L+F  MR +G+  DA+
Sbjct: 494 ----NLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDAT 549

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL S++S C+S     HG  +H    +  +   V V +AL++ YS  G  SDA  LF  +
Sbjct: 550 TLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM 609

Query: 299 KVYDTILLNTMITVY----SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
              D I  NTMI+ Y    +S   ++    +F T  + + ++++S +   S  G+ I+  
Sbjct: 610 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGK 669

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDF 413
            +   + +L L+ +     S+I+     +S+E  E+VF       + +  I+S + L+  
Sbjct: 670 MVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQ-----SMPTHDIVSYNVLIGG 724

Query: 414 YC--KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
           Y   + G  A+ +F+ MR+ G+KP  IT   I  +      +    +   A   +     
Sbjct: 725 YAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLS 784

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV--AHGDKGL 523
           +    + ++ ++A+ G L  + N+   +    ++  W++I+   V   HG++ L
Sbjct: 785 DEYVANSLITMYAKCGNLESSTNIFNSIT-NKNIVSWNAIIAANVQLGHGEEAL 837



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 152/360 (42%), Gaps = 69/360 (19%)

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           +FD   D +   W + +SG +      +A  +   MR  GV      LAS+++AC   G 
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGR 358

Query: 253 LEH---GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
            E    G  +H    + G++ +V + +ALL  Y  RG+ SDA +LF E+   + +    +
Sbjct: 359 DEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTAL 418

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           +   SS G +E+A   +R M                ++G P       CN N        
Sbjct: 419 MVALSSNGYLEEALRAYRQM---------------RRDGVP-------CNAN-------- 448

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFN- 426
            + A+V+S C ++ +   G QV ++V + GL +   ++ SL+  +   G  +DA  LF+ 
Sbjct: 449 -AFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDR 507

Query: 427 ------------------------------EMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                         +MR+ G++P   T  +++S C        G
Sbjct: 508 MEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHG 567

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
                ++  +  +D  +   + +V++++ AG L++A  L   M    D+  W++++   V
Sbjct: 568 SG-IHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMS-RRDLISWNTMISSYV 625



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           +FD   D +   W + +SG +    D  A  +   MR  GV      LAS+++AC   G 
Sbjct: 76  LFDEMADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGR 135

Query: 253 LEH---GKQVHGHACKVGVIDDVIVASALL 279
            E    G  +H    + G++ +V +  ALL
Sbjct: 136 DEGIACGAAIHALTHRAGLMGNVYIGRALL 165


>gi|357481223|ref|XP_003610897.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512232|gb|AES93855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 774

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 187/625 (29%), Positives = 301/625 (48%), Gaps = 106/625 (16%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDAL 61
           T  DY A L  +C     I  G  LH + L K   + + + + N LL MY +CG+   A 
Sbjct: 77  TLQDY-AFLFHACAQKKYIKQGMALHHYILNKHPKIQNDIFLTNNLLNMYCKCGHLDYAR 135

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKADL 118
            LFD+MPRRN  SW  ++ G+ + G   +   LF+ M    + N+F++  ++    + D 
Sbjct: 136 YLFDQMPRRNFVSWTVLVSGYAQFGLIRECFALFSGMLACFRPNEFAFASVLCACEEQD- 194

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-GDF-NSANQVLNMMKEPDDFCLSA 176
             ++YG Q+H+  L   LDF   + ++L+ +Y KC G F  S +Q               
Sbjct: 195 --VKYGLQVHAAALKMSLDFSVYVANALITMYSKCSGGFGGSCDQT-------------- 238

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
                      +DA  VF      + + WNSMISG+       +A+ LF  M  NG+  +
Sbjct: 239 ----------TDDAWMVFKSMEYRNLISWNSMISGFQFRGLGDKAIGLFAHMYCNGIRFN 288

Query: 237 ASTLASVLSA---CSSLG-------FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
           ++TL  VLS+   C S          L++  Q+H    K G+I +V V +AL+ +Y+  G
Sbjct: 289 STTLLGVLSSLNHCMSTSDDINNTHHLKNCFQLHCLTVKSGLISEVEVVTALVKSYADLG 348

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLS 345
                                         G I D   +F  T     ++SW ++I   +
Sbjct: 349 ------------------------------GHISDCFKLFLDTSGEHDIVSWTAIISVFA 378

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
           +   P +A  LFC +++ +  +D+ + +  + ACA   + +   +V ++V   G  +D +
Sbjct: 379 ER-DPEQAFLLFCQLHRENFVLDRHTFSIALKACAYFVTEKNATEVHSQVMKQGFHNDTV 437

Query: 406 ISTSLVDFYCKCGYDALA--LFNEM----------------------------RNTGVKP 435
           +S +L+  Y + G  AL+  +F EM                            +   V P
Sbjct: 438 VSNALIHAYGRSGSLALSEQVFTEMGCHDLVSWNSMLKSYAIHGRAKDALDLFKQMDVHP 497

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
              TF A+L+AC H GLV+EG + F++M   + I P ++HYSCMVDL+ RAG + EA  L
Sbjct: 498 DSATFVALLAACSHAGLVEEGTQIFNSMTESHGIAPHLDHYSCMVDLYGRAGKIFEAEEL 557

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555
           I +MP + D  +WSS+L  C  HG+  L +  A++   LDP+N+ AYIQ+S+I+++ G +
Sbjct: 558 IRKMPMKPDSVIWSSLLGSCRKHGEADLAKLAADKFKVLDPKNSLAYIQMSNIYSSGGSF 617

Query: 556 EKSSLIRDIMREKHVGKLPGCSWAD 580
            ++ LIR  MR+  V K PG SW +
Sbjct: 618 IEAGLIRKEMRDSKVRKRPGLSWVE 642


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 148/444 (33%), Positives = 234/444 (52%), Gaps = 33/444 (7%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D F  + L+  YA CG++N AR VFD  +    V WN+MI  Y       EA  LF +M+
Sbjct: 148 DPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMK 207

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
            + V+ D   L +++SAC   G + + + ++    +  V  D  + +AL+  Y+  G   
Sbjct: 208 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMD 267

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
            A + F ++ V +  +   M++ YS  GR++DA+ IF     K L+ W +MI   +++  
Sbjct: 268 MAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDH 327

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
           P EAL +F  M    ++ D  ++ SVISAC N+ +L+  + V     + GL+S   I  +
Sbjct: 328 PQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNA 387

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           L++ Y KCG                                  D+L+LF +M+   V+P 
Sbjct: 388 LINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPN 447

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            +TF  +L  C H GLV+EG+K F +M  +Y+I P+IEHY CMVDLF RA  L EA+ +I
Sbjct: 448 EVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVI 507

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
           E MP   +V +W S++  C  HG+  LG   A+R+++L+P++  A + +S+I+A    W+
Sbjct: 508 ESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWD 567

Query: 557 KSSLIRDIMREKHVGKLPGCSWAD 580
              +IR IM +K V K  G S  D
Sbjct: 568 YVRIIRWIMEKKKVFKEKGLSRID 591


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 147/496 (29%), Positives = 244/496 (49%), Gaps = 64/496 (12%)

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L ++  GKQ+HS I  +G   D  + + L+NLY K G+  +A  + + M   +    + +
Sbjct: 82  LKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIM 141

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I  Y   G +  A+ +FD   D +   WN+M++G      + EALLLF +M     + D 
Sbjct: 142 IKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDE 201

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            +L SVL  C+ LG L  G+QVH +  K G   +++V  +L   Y K             
Sbjct: 202 YSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMK------------- 248

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                              G + D + +   MP+ SL++WN+++ G +Q G     LD +
Sbjct: 249 ------------------AGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQY 290

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL----------------- 400
           C M     R DK +  SVIS+C+ ++ L  G+Q+ A     G                  
Sbjct: 291 CMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRC 350

Query: 401 --------------DSDQIISTSLVDFYC--KCGYDALALFNEMRNTGVKPTIITFTAIL 444
                         + D ++ +S++  Y     G +A+ LFNEM    +    ITF ++L
Sbjct: 351 GCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLL 410

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
            AC HCGL  +G   FD M  +Y +   ++HY+C+VDL  R+GCL EA  +I  MP +AD
Sbjct: 411 YACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKAD 470

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
             +W ++L  C  H +  + R+VA+ ++ +DP+++ +Y+ L++I++++  W+  S +R  
Sbjct: 471 AIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRA 530

Query: 565 MREKHVGKLPGCSWAD 580
           M++K V K PG SW +
Sbjct: 531 MKDKMVKKEPGISWVE 546



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 202/446 (45%), Gaps = 81/446 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LLQ+C    S+ +GKQLH      G  +S   I+N LL +Y + G    A+ LFD M
Sbjct: 72  FSNLLQACIPLKSVSLGKQLHSLIFTSGC-SSDKFISNHLLNLYSKFGELQAAVALFDRM 130

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
           PRRN  S N MI+ ++ +G+ E +  LF+ MP +N  +WN +++G  K            
Sbjct: 131 PRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFS 190

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                A L AL  G+Q+H++++  G + + V+G SL ++Y K G
Sbjct: 191 RMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAG 250

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
             +   +V+N M                                D S V WN+++SG   
Sbjct: 251 SMHDGERVINWM-------------------------------PDCSLVAWNTLMSGKAQ 279

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
                  L  +  M+  G   D  T  SV+S+CS L  L  GKQ+H  A K G   +V V
Sbjct: 280 KGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSV 339

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            S+L+  YS+ G   D+ K F E K  D +L ++MI  Y   G+ E+A  +F  M  ++L
Sbjct: 340 VSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENL 399

Query: 335 ----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG-- 388
               I++ S++   S  G   + L LF      D+ + K+ L + +     +  L LG  
Sbjct: 400 PGNEITFLSLLYACSHCGLKDKGLGLF------DMMVKKYGLKARLQHYTCLVDL-LGRS 452

Query: 389 ---EQVFARVTIIGLDSDQIISTSLV 411
              E+  A +  + + +D II  +L+
Sbjct: 453 GCLEEAEAMIRSMPVKADAIIWKTLL 478



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 160/332 (48%), Gaps = 38/332 (11%)

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
            +++L AC  L  +  GKQ+H      G   D  +++ LL+ YSK G    A  LF  + 
Sbjct: 72  FSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMP 131

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             + +  N MI  Y   G +E AK++F  MP++++ +WN+M+ GL++     EAL LF  
Sbjct: 132 RRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSR 191

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           MN+L    D++SL SV+  CA++ +L  G+QV A V   G + + ++  SL   Y K G 
Sbjct: 192 MNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGS 251

Query: 419 -YDALALFN-------------------------------EMRNTGVKPTIITFTAILSA 446
            +D   + N                                M+  G +P  ITF +++S+
Sbjct: 252 MHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISS 311

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C    ++ +G K   A   +     E+   S +V +++R GCL +++    +   E DV 
Sbjct: 312 CSELAILCQG-KQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECK-ERDVV 369

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
           +WSS++    A+G  G G +  +   E++ EN
Sbjct: 370 LWSSMI---AAYGFHGQGEEAIKLFNEMEQEN 398


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 180/678 (26%), Positives = 309/678 (45%), Gaps = 137/678 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ARLLQ C        G+ +H   +++G +       AN LL +Y + G    A  LFD M
Sbjct: 51  ARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGM 110

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P RN  S+  +++G+   G  E++  LF  + ++    N F    ++      D   L  
Sbjct: 111 PERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTC 170

Query: 124 ----------------------------GKQIHSHILVNGLDF-DSVLGSSLVNLYGKCG 154
                                       G   H+  + +G+ + D+V  +++V+ Y +  
Sbjct: 171 CIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSEND 230

Query: 155 DFNSANQVLNMMK----EPDDF----------CLS------------------------- 175
               A    + M+    +P+ F          CLS                         
Sbjct: 231 IPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGG 290

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           AL+  YA CG + DAR VF+       ++W+ +IS Y  + ++ +A  +F +M R+ V+ 
Sbjct: 291 ALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVP 350

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           +  +L+ VL AC+++ FL+ G+Q+H    K+G   ++ V +AL+D Y+K           
Sbjct: 351 NEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAK----------- 399

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                               C  +E++  IFR++ + + +SWN++IVG  Q+G   +AL 
Sbjct: 400 --------------------CRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALS 439

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           +F  M    +   + + +SV+ ACAN +S++   Q+ + +     ++D I+  SL+D Y 
Sbjct: 440 VFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYA 499

Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
           KCG                                  DAL LFN M  +  KP  +TF A
Sbjct: 500 KCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVA 559

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LS C   GLV +G   F++M   + I P ++HY+C+V L  RAG LN+A+  I  +P  
Sbjct: 560 LLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPST 619

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
               +W ++L  CV H +  LG+  AE+++E++P++   Y+ LS+++A +G  ++ +L+R
Sbjct: 620 PSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLR 679

Query: 563 DIMREKHVGKLPGCSWAD 580
             MR   V K  G SW +
Sbjct: 680 KSMRNIGVKKEVGLSWVE 697



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 127/508 (25%), Positives = 232/508 (45%), Gaps = 95/508 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDE 66
           L  +L++     S  +GK +H   +K   L  T P +   LL MY +CG   DA  +F+ 
Sbjct: 254 LTSVLKAAVCLSSAVLGKGIHGCAVKT--LCDTEPHVGGALLDMYAKCGYIEDARTVFEI 311

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAA 120
           +P  +   W+ +I  + +    E++ ++F      +V+P  N+FS + ++   A A++A 
Sbjct: 312 IPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVP--NEFSLSGVLQ--ACANVAF 367

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L+ G+QIH+ ++  G + +  +G++L+++Y KC +  ++ ++   +++ ++   + +I G
Sbjct: 368 LDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVG 427

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y   G   D                               AL +F +MR   VL    T 
Sbjct: 428 YCQSGFAED-------------------------------ALSVFQEMRAAHVLSTQVTF 456

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SVL AC++   ++H  Q+H    K    +D IV ++L+DTY+K G   DA K+F  +  
Sbjct: 457 SSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQ 516

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            D +  N +I+ Y+  GR  D                               AL+LF  M
Sbjct: 517 CDVVSWNAIISGYALHGRATD-------------------------------ALELFNRM 545

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC----- 415
           NK D + +  +  +++S C +   +  G  +F  +T+     D  I  S+  + C     
Sbjct: 546 NKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTM-----DHRIKPSMDHYTCIVRLL 600

Query: 416 -KCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
            + G   DAL    ++ +T   P+ + + A+LS+C     V  G+  F A K    I+P+
Sbjct: 601 GRAGRLNDALKFIGDIPST---PSPMVWRALLSSCVVHKNVALGK--FSAEK-VLEIEPQ 654

Query: 473 IE-HYSCMVDLFARAGCLNEAVNLIEQM 499
            E  Y  + +++A AG L++   L + M
Sbjct: 655 DETTYVLLSNMYAAAGILDQVALLRKSM 682



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 20/190 (10%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           + T++ + + +L++C    SI    Q+H   ++K   N+   + N L+  Y +CG   DA
Sbjct: 450 LSTQVTF-SSVLRACANTASIKHTVQIH-SLIEKSTFNNDTIVCNSLIDTYAKCGCIRDA 507

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKA 116
           L +F+ + + +  SWNA+I G+   G    +L+LFN M     + ND ++  L+S     
Sbjct: 508 LKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGST 567

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSL------VNLYGKCGDFNSANQVL-NMMKEP 169
            L             L N +  D  +  S+      V L G+ G  N A + + ++   P
Sbjct: 568 GLVNQGLS-------LFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTP 620

Query: 170 DDFCLSALIS 179
                 AL+S
Sbjct: 621 SPMVWRALLS 630


>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
 gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
          Length = 740

 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 185/654 (28%), Positives = 303/654 (46%), Gaps = 114/654 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDE 66
           LA +L +C+       G + H   +K G L+  + + N LL MY +CG   D  + +F+ 
Sbjct: 107 LASVLSACSKVLDGVFGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFIVDYGVRVFES 165

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-----------AK 115
           + + N  S+ A+I G  +     +++Q+F +M +K     ++ +S             + 
Sbjct: 166 LSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSL 225

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           +++   E GKQIH   L  G   D  L +SL+ +Y K  D N A  +   M E +    +
Sbjct: 226 SEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWN 285

Query: 176 ALISGYAN-----------------------------------CGKMNDARRVFDRTTDT 200
            +I G+                                      G +   RR+F      
Sbjct: 286 IMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQP 345

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           S   WN+M+SGY +     EA+  F +M+   +  D +TL+ +LS+C+ L FLE GKQ+H
Sbjct: 346 SVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIH 405

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G   +  +  +  + S L                               I VYS C ++E
Sbjct: 406 GVVIRTEISKNSHIVSGL-------------------------------IAVYSECEKME 434

Query: 321 DAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISA 378
            ++ IF    N+  +  WNSMI G   N    +AL LF  M++   L  ++ S A+V+S+
Sbjct: 435 ISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSS 494

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------- 419
           C+ + SL  G Q    V   G  SD  + T+L D YCKCG                    
Sbjct: 495 CSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIW 554

Query: 420 --------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         +A+ L+ +M ++G KP  ITF ++L+AC H GLV+ G +   +M+ 
Sbjct: 555 NEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQR 614

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
            + I+PE++HY C+VD   RAG L +A  L E  P+++   +W  +L  C  HGD  L R
Sbjct: 615 IHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLAR 674

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579
           +VAE+++ LDP+++ AY+ LS+ +++  +W+ S+ ++ +M +  V K PG SW 
Sbjct: 675 RVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAALQGLMNKNRVHKTPGQSWT 728



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 147/574 (25%), Positives = 254/574 (44%), Gaps = 95/574 (16%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           + S   + NRLL +Y+ CG+   A  +FDEM  R+ +SWNA +    K+G   ++ ++F+
Sbjct: 3   MKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVFD 62

Query: 97  VMPQKNDFSWNMLIS-----GFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
            MP+++  SWN +IS     GF +  L    Y + +    L +     SVL +    L G
Sbjct: 63  GMPERDVVSWNNMISVLVRKGFEEKALVV--YKRMVCDGFLPSRFTLASVLSACSKVLDG 120

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND-ARRVFDRTTDTSSVMWNSMIS 210
             G        +    + + F  +AL+S YA CG + D   RVF+  +  + V + ++I 
Sbjct: 121 VFG-MRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIG 179

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS------ACSSLGFL---EHGKQVHG 261
           G    N+  EA+ +F  M   GV  D+  L+++LS       C SL  +   E GKQ+H 
Sbjct: 180 GLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHC 239

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM------------ 309
            A ++G   D+ + ++LL+ Y+K    + A  +F+E+   + +  N M            
Sbjct: 240 LALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDK 299

Query: 310 --------------------ITVYSSC---GRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
                               I+V  +C   G +E  + IF ++P  S+ +WN+M+ G S 
Sbjct: 300 SVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSN 359

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
                EA+  F  M   +L+ DK +L+ ++S+CA +  LE G+Q+   V    +  +  I
Sbjct: 360 YEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHI 419

Query: 407 STSLVDFYCKC---------------------------GY-------DALALFNEMRNTG 432
            + L+  Y +C                           G+        AL LF  M  T 
Sbjct: 420 VSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTA 479

Query: 433 VK-PTIITFTAILSACDH-CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           V  P   +F  +LS+C   C L+   Q     +K  Y  D  +E  + + D++ + G ++
Sbjct: 480 VLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVE--TALTDMYCKCGEID 537

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
            A    + +    +  +W+ ++ G   +G  G G
Sbjct: 538 SARQFFDAV-LRKNTVIWNEMIHG---YGHNGRG 567



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 126/524 (24%), Positives = 227/524 (43%), Gaps = 90/524 (17%)

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           G+  D+ L + L++LY +CGD + A +V + M   D +  +A ++     G + +A  VF
Sbjct: 2   GMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVF 61

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           D   +   V WN+MIS  +    + +AL+++ +M  +G L    TLASVLSACS +    
Sbjct: 62  DGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGV 121

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G + HG A K G+  ++ V +ALL  Y+K                              
Sbjct: 122 FGMRCHGVAVKTGLDKNIFVGNALLSMYAK------------------------------ 151

Query: 315 SCGRIED-AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
            CG I D    +F ++   + +S+ ++I GL++    +EA+ +F  M +  +++D   L+
Sbjct: 152 -CGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLS 210

Query: 374 SVIS------ACANISSL---ELGEQVFARVTIIGLDSDQIISTSLVDFYCK-------- 416
           +++S       C ++S +   ELG+Q+      +G   D  ++ SL++ Y K        
Sbjct: 211 NILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAE 270

Query: 417 ------------------CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                              G+        ++     MR++G +P  +T  ++L AC   G
Sbjct: 271 LIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSG 330

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE---ADVGMW 508
            V+ G++ F ++       P +  ++ M+  ++      EA++   QM F+    D    
Sbjct: 331 DVETGRRIFSSIP-----QPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTL 385

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           S IL  C        G+++   +I  +       +  S + A   E EK   I + + + 
Sbjct: 386 SVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIV--SGLIAVYSECEKME-ISECIFDD 442

Query: 569 HVGKLPGCSWADGIA-FNCWFLDTMFLQLANFDEIKQHQSADFC 611
            + +L    W   I+ F    LDT  L L      + HQ+A  C
Sbjct: 443 CINELDIACWNSMISGFRHNMLDTKALILFR----RMHQTAVLC 482



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 7/201 (3%)

Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
           +G+  D  + + LLD Y + G    A K+F E+ V D    N  +T     G + +A  +
Sbjct: 1   MGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEV 60

Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
           F  MP + ++SWN+MI  L + G   +AL ++  M        +F+LASV+SAC+ +   
Sbjct: 61  FDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDG 120

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---DALALFNEMRNTGVKPTIITFTA 442
             G +        GLD +  +  +L+  Y KCG+     + +F  +     +P  +++TA
Sbjct: 121 VFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLS----QPNEVSYTA 176

Query: 443 ILSACDHCGLVKEGQKWFDAM 463
           ++        V E  + F  M
Sbjct: 177 VIGGLARENKVLEAVQMFRLM 197


>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
 gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
          Length = 867

 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 172/596 (28%), Positives = 294/596 (49%), Gaps = 69/596 (11%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+Q+H + L+   L++ + + N LL  Y++ G   +A  LF  M  R+  SWN +I G+ 
Sbjct: 264 GRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYA 323

Query: 84  KLGHKEKSLQLFNVMPQKNDF---SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
             G   KSL +F  +         S  M+    A A L  L+ GKQ+H++IL +   F+ 
Sbjct: 324 LNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAGKQVHAYILRHPFLFE- 382

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
                         D ++ N               AL+S YA CG + +A   F   +  
Sbjct: 383 --------------DTSAGN---------------ALVSFYAKCGYIEEAYHTFSMISRK 413

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             + WNS++  +      +  L L H M +  +  D+ T+ +++  C+SL  ++  K++H
Sbjct: 414 DLISWNSILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEIH 473

Query: 261 GHACKVGVI---DDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSC 316
           G++ + G +       V +A+LD YSK G    A K+F  L +  + +  N++I+ Y   
Sbjct: 474 GYSIRSGSLLCATAPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGL 533

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G   DA  IF  M    L +WN M+   ++N  P +AL+LF  +    ++ D  ++ S+I
Sbjct: 534 GSHYDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALELFLKLQTQGMKPDVVTIMSLI 593

Query: 377 SACANISSLELGEQ---------------------VFARVTIIG---------LDSDQII 406
             C  ++S+ L  Q                      +A+  IIG         +D D ++
Sbjct: 594 PVCTQMASVHLLRQCHGYIIRSSFEDLHLKGTLLDAYAKCGIIGYAYKIFQSSVDKDLVM 653

Query: 407 STSLVDFYCKCGYD--ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
            T+++  Y   G    AL  F+ M N G+KP  + FT+ILSAC H G + EG K FD+++
Sbjct: 654 FTAMIGGYAMHGMSEKALETFSHMLNMGIKPDHVIFTSILSACSHAGRIAEGLKIFDSIE 713

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             + + P IE ++C+VDL AR G ++EA + + ++P EA+  +W ++L  C  + +  LG
Sbjct: 714 KIHGMKPTIEQFACVVDLLARGGHVSEAYSFVTKIPIEANANIWGTLLGACKTYHEVELG 773

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           R VA+++ +++  +   YI LS+++A    W+    +R +MR K + K  GCSW +
Sbjct: 774 RIVADKLFKIEANDIGNYIVLSNLYAADDRWDGVMEVRKMMRNKDLKKPAGCSWIE 829



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 207/457 (45%), Gaps = 86/457 (18%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           + LA +L+SC+   + ++GK LH + +K+G ++  +  +  LL MY +CG   D   LFD
Sbjct: 38  EVLAAILKSCSALLASNLGKCLHSYVVKQGHVSCHVT-SKALLNMYAKCGMLDDCHKLFD 96

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKS-LQLF-------NVMPQKNDFSWNMLISGFAKAD 117
           +  R +   WN ++ G+ + G  +   +++F        VMP     +  + +     A 
Sbjct: 97  QFGRCDPVIWNIVLSGYSRSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLPVC----AR 152

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
              L  GK +H +++ +G + D+  G++LV++Y KC                        
Sbjct: 153 SGNLNGGKSVHGYVIKSGFEMDTFAGNALVSMYAKC------------------------ 188

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
             G   C    DA  VFD       V WN+MI+G   N    EA  LF  M +  V  + 
Sbjct: 189 --GLVAC----DAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNY 242

Query: 238 STLASVLSACSSLGF-LEH--GKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACK 293
           +T+A++L  C+S    + H  G+Q+H +  +   +  DV V +ALL  Y K G   +A  
Sbjct: 243 ATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAES 302

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF  +   D +  NT+I                                G + NG  +++
Sbjct: 303 LFWAMDARDLVSWNTIIA-------------------------------GYALNGEWLKS 331

Query: 354 LDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLV 411
           L +F N+  L+ L +D  ++ S++ ACA + +L+ G+QV A +     L  D     +LV
Sbjct: 332 LHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAGKQVHAYILRHPFLFEDTSAGNALV 391

Query: 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSA 446
            FY KCGY  +A   F+ +     +  +I++ +IL A
Sbjct: 392 SFYAKCGYIEEAYHTFSMIS----RKDLISWNSILDA 424



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 155/367 (42%), Gaps = 51/367 (13%)

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVL--EDASTLASVLSACSSLGFLEHGKQVHGH 262
           W S I     ++   EAL  FH   ++      D   LA++L +CS+L     GK +H +
Sbjct: 3   WASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLHSY 62

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE-D 321
             K G +   + + ALL+ Y+K GM  D  KLF +    D ++ N +++ YS  G+ + D
Sbjct: 63  VVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDAD 122

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
              +FR M +   +  +S+                              ++A+V+  CA 
Sbjct: 123 VMKVFRAMHSSGEVMPSSV------------------------------TIATVLPVCAR 152

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---DALALFNEMRNTGVKPTII 438
             +L  G+ V   V   G + D     +LV  Y KCG    DA A+F+ +    +   ++
Sbjct: 153 SGNLNGGKSVHGYVIKSGFEMDTFAGNALVSMYAKCGLVACDAYAVFDSI----IHKDVV 208

Query: 439 TFTAILSACDHCGLVKEGQKWFDAM-----KWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           ++ A+++     GL+KE    F  M     K  Y     I       D      C  +  
Sbjct: 209 SWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYATVANILPVCASFDENIAHRCGRQIH 268

Query: 494 NLIEQMP-FEADVGMWSSILRGCVAHGDKGLGRKVAERMI-ELDPENACAYIQLSSIFAT 551
           + + Q P   ADV + +++L   +  G      K AE +   +D  +  ++  + + +A 
Sbjct: 269 SYVLQWPELSADVSVCNALLSFYLKVGRT----KEAESLFWAMDARDLVSWNTIIAGYAL 324

Query: 552 SGEWEKS 558
           +GEW KS
Sbjct: 325 NGEWLKS 331


>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
          Length = 628

 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 241/494 (48%), Gaps = 64/494 (12%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL   +Q+H+    +G   D    + L+  Y   GD  +A ++   +   +    + L  
Sbjct: 56  ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFG 115

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GY   G +  AR++FD   + +   WN+M++G  +   D E+L  F  MRR G+  D   
Sbjct: 116 GYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFG 175

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L SV   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +               
Sbjct: 176 LGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR--------------- 220

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG +++ + + R +P+ S++S N++I G +QNG    AL+ FC 
Sbjct: 221 ----------------CGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCM 264

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M  + +  D  +  S IS+C+++++L  G+Q+  +V   G+D    + T LV  Y +CG 
Sbjct: 265 MRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 324

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF +M N G +P+ +TF A+L A
Sbjct: 325 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYA 384

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL +EG   F+ M   Y + P ++HY+C+VDL  R+GCL+EA  LI  MP   D  
Sbjct: 385 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGV 444

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C    +  +  ++A+R+IELDP ++ +Y+ LS+I ATS  W   S +R  MR
Sbjct: 445 IWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMR 504

Query: 567 EKHVGKLPGCSWAD 580
           + +V K PG SW +
Sbjct: 505 DNNVRKEPGVSWVE 518



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 169/392 (43%), Gaps = 72/392 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L ++C     +   +QLH      G        AN L+  Y   G+ T A  LF+ +
Sbjct: 47  FSHLFRACRALRPL---RQLHAFAATSGAATDRF-TANHLMLAYADLGDLTAARELFERI 102

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
           PRRN  SWN +  G++K G    + +LF+ MP++N  +WN +++G               
Sbjct: 103 PRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFL 162

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                A L  +  G+Q+H++++ +GLD D  +GSSL ++Y +CG
Sbjct: 163 DMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCG 222

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
                  VL M+                                  S V  N++I+G   
Sbjct: 223 CLQEGEAVLRMLPS-------------------------------LSIVSCNTIIAGRTQ 251

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N +   AL  F  MR  GV  D  T  S +S+CS L  L  G+Q+HG   K GV   V V
Sbjct: 252 NGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPV 311

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--- 331
            + L+  YS+ G   D+ ++F      DT LL+ MI+ Y   G  + A  +F+ M N   
Sbjct: 312 MTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGA 371

Query: 332 -KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
             S +++ +++   S +G   E +D F  M K
Sbjct: 372 EPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 17/198 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC+   ++  G+Q+H   +K G+ +  +P+   L+ MY RCG   D+  +F      +
Sbjct: 281 ISSCSDLAALAQGQQIHGQVMKAGV-DKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSD 339

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLI-----SGFAKADLAALE 122
            F  +AMI  +   GH +K+++LF  M     + +D ++  L+     SG  +  +   E
Sbjct: 340 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 399

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALISGY 181
              + +      G+       + +V+L G+ G  + A   +L+M   PD      L+S  
Sbjct: 400 LMTKTY------GMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSAC 453

Query: 182 ANCGKMNDARRVFDRTTD 199
                 + A R+  R  +
Sbjct: 454 KTQKNFDMAERIAKRVIE 471


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 241/494 (48%), Gaps = 64/494 (12%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL   +Q+H+    +G   D    + L+  Y   GD  +A ++   +   +    + L  
Sbjct: 56  ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFG 115

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GY   G +  AR++FD   + +   WN+M++G  +   D E+L  F  MRR G+  D   
Sbjct: 116 GYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFG 175

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L SV   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +               
Sbjct: 176 LGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR--------------- 220

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG +++ + + R +P+ S++S N++I G +QNG    AL+ FC 
Sbjct: 221 ----------------CGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCM 264

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M  + +  D  +  S IS+C+++++L  G+Q+  +V   G+D    + T LV  Y +CG 
Sbjct: 265 MRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 324

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF +M N G +P+ +TF A+L A
Sbjct: 325 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYA 384

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL +EG   F+ M   Y + P ++HY+C+VDL  R+GCL+EA  LI  MP   D  
Sbjct: 385 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGV 444

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C    +  +  ++A+R+IELDP ++ +Y+ LS+I ATS  W   S +R  MR
Sbjct: 445 IWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMR 504

Query: 567 EKHVGKLPGCSWAD 580
           + +V K PG SW +
Sbjct: 505 DNNVRKEPGVSWVE 518



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 169/392 (43%), Gaps = 72/392 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L ++C     +   +QLH      G        AN L+  Y   G+ T A  LF+ +
Sbjct: 47  FSHLFRACRALRPL---RQLHAFAATSGAATDRF-TANHLMLAYADLGDLTAARELFERI 102

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
           PRRN  SWN +  G++K G    + +LF+ MP++N  +WN +++G               
Sbjct: 103 PRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFL 162

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                A L  +  G+Q+H++++ +GLD D  +GSSL ++Y +CG
Sbjct: 163 DMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCG 222

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
                  VL M+                                  S V  N++I+G   
Sbjct: 223 CLQEGEAVLRMLPS-------------------------------LSIVSCNTIIAGRTQ 251

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N +   AL  F  MR  GV  D  T  S +S+CS L  L  G+Q+HG   K GV   V V
Sbjct: 252 NGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPV 311

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--- 331
            + L+  YS+ G   D+ ++F      DT LL+ MI+ Y   G  + A  +F+ M N   
Sbjct: 312 MTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGA 371

Query: 332 -KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
             S +++ +++   S +G   E +D F  M K
Sbjct: 372 EPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 17/198 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC+   ++  G+Q+H   +K G+ +  +P+   L+ MY RCG   D+  +F      +
Sbjct: 281 ISSCSDLAALAQGQQIHGQVMKAGV-DKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSD 339

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLI-----SGFAKADLAALE 122
            F  +AMI  +   GH +K+++LF  M     + +D ++  L+     SG  +  +   E
Sbjct: 340 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 399

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALISGY 181
              + +      G+       + +V+L G+ G  + A   +L+M   PD      L+S  
Sbjct: 400 LMTKTY------GMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSAC 453

Query: 182 ANCGKMNDARRVFDRTTD 199
                 + A R+  R  +
Sbjct: 454 KTQKNFDMAERIAKRVIE 471


>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
 gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 774

 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 185/654 (28%), Positives = 303/654 (46%), Gaps = 114/654 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDE 66
           LA +L +C+       G + H   +K G L+  + + N LL MY +CG   D  + +F+ 
Sbjct: 141 LASVLSACSKVLDGVFGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFIVDYGVRVFES 199

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-----------AK 115
           + + N  S+ A+I G  +     +++Q+F +M +K     ++ +S             + 
Sbjct: 200 LSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSL 259

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           +++   E GKQIH   L  G   D  L +SL+ +Y K  D N A  +   M E +    +
Sbjct: 260 SEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWN 319

Query: 176 ALISGYAN-----------------------------------CGKMNDARRVFDRTTDT 200
            +I G+                                      G +   RR+F      
Sbjct: 320 IMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQP 379

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           S   WN+M+SGY +     EA+  F +M+   +  D +TL+ +LS+C+ L FLE GKQ+H
Sbjct: 380 SVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIH 439

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G   +  +  +  + S L                               I VYS C ++E
Sbjct: 440 GVVIRTEISKNSHIVSGL-------------------------------IAVYSECEKME 468

Query: 321 DAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISA 378
            ++ IF    N+  +  WNSMI G   N    +AL LF  M++   L  ++ S A+V+S+
Sbjct: 469 ISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSS 528

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------- 419
           C+ + SL  G Q    V   G  SD  + T+L D YCKCG                    
Sbjct: 529 CSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIW 588

Query: 420 --------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                         +A+ L+ +M ++G KP  ITF ++L+AC H GLV+ G +   +M+ 
Sbjct: 589 NEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQR 648

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
            + I+PE++HY C+VD   RAG L +A  L E  P+++   +W  +L  C  HGD  L R
Sbjct: 649 IHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLAR 708

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579
           +VAE+++ LDP+++ AY+ LS+ +++  +W+ S+ ++ +M +  V K PG SW 
Sbjct: 709 RVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAALQGLMNKNRVHKTPGQSWT 762



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 154/602 (25%), Positives = 268/602 (44%), Gaps = 92/602 (15%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           YLA LL+          GK +H   ++ G+ + T  + NRLL +Y+ CG+   A  +FDE
Sbjct: 8   YLASLLRCYRDERCKLSGKVIHGFIVRMGMKSDTY-LCNRLLDLYIECGDGDYARKVFDE 66

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEY 123
           M  R+ +SWNA +    K+G   ++ ++F+ MP+++  SWN +IS   +    + A + Y
Sbjct: 67  MSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVY 126

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            + +    L +     SVL +    L G  G        +    + + F  +AL+S YA 
Sbjct: 127 KRMVCDGFLPSRFTLASVLSACSKVLDGVFG-MRCHGVAVKTGLDKNIFVGNALLSMYAK 185

Query: 184 CGKMND-ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           CG + D   RVF+  +  + V + ++I G    N+  EA+ +F  M   GV  D+  L++
Sbjct: 186 CGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSN 245

Query: 243 VLS------ACSSLGFL---EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
           +LS       C SL  +   E GKQ+H  A ++G   D+ + ++LL+ Y+K    + A  
Sbjct: 246 ILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAEL 305

Query: 294 LFSELKVYDTILLNTM--------------------------------ITVYSSC---GR 318
           +F+E+   + +  N M                                I+V  +C   G 
Sbjct: 306 IFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGD 365

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +E  + IF ++P  S+ +WN+M+ G S      EA+  F  M   +L+ DK +L+ ++S+
Sbjct: 366 VETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSS 425

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------------- 417
           CA +  LE G+Q+   V    +  +  I + L+  Y +C                     
Sbjct: 426 CARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIAC 485

Query: 418 ------GY-------DALALFNEMRNTGVK-PTIITFTAILSACDH-CGLVKEGQKWFDA 462
                 G+        AL LF  M  T V  P   +F  +LS+C   C L+   Q     
Sbjct: 486 WNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLV 545

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           +K  Y  D  +E  + + D++ + G ++ A    + +    +  +W+ ++ G   +G  G
Sbjct: 546 VKSGYVSDSFVE--TALTDMYCKCGEIDSARQFFDAV-LRKNTVIWNEMIHG---YGHNG 599

Query: 523 LG 524
            G
Sbjct: 600 RG 601


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 191/680 (28%), Positives = 315/680 (46%), Gaps = 143/680 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL +C     + +G+ +H + L+ G+ +S   +A  L+  Y+R       LL FD M
Sbjct: 157 MVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLL-FDLM 215

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFS-WNMLISGFAKADLAALEYGK 125
             RN  SWNAMI G+  +G   K+L+LF  ++  +  F    ML++  A A+L +L+ GK
Sbjct: 216 VVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGK 275

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           QIH       + F+ V                            D + L+AL++ Y+N G
Sbjct: 276 QIHQL----AIKFEFV---------------------------EDLYILNALLNMYSNNG 304

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            +  + ++F+   +  + +WNSMIS Y +     EA+ LF +M+  GV +D  T+  +LS
Sbjct: 305 SLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLS 364

Query: 246 ACSSL--GFLEHGKQVHGHACKVGVIDDVIVASALLDTYS-------------------- 283
            C  L  G L+ GK +H H  K G+  D  + +ALL  Y+                    
Sbjct: 365 MCEELASGLLK-GKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDI 423

Query: 284 -----------KRGMPSDACKLF-----SELKV--YDTI--------------------- 304
                      +  + + AC+LF     SE+K   Y  I                     
Sbjct: 424 ISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGY 483

Query: 305 -----------LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                      L   +  +Y +CG    A+ +F   P++ LISWN+MI    +N    +A
Sbjct: 484 VMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKA 543

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG--LDSDQIISTSLV 411
           L LF  M   +   +  ++ +V+S+  ++++L  G+ + A VT  G  L  D  ++ + +
Sbjct: 544 LLLFHRMIS-EAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFI 602

Query: 412 DFYCKCGY---------------------------------DALALFNEMRNTGVKPTII 438
             Y +CG                                  DA+  F++M   G +P  +
Sbjct: 603 TMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGV 662

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TF ++LSAC H G ++ G + F +M   +++ PE+ HYSC+VDL AR GC++EA   I+ 
Sbjct: 663 TFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDS 722

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MP E D  +W ++L  C A+ D    + + E++ +L+P NA  Y+ LS+++AT+G W + 
Sbjct: 723 MPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEV 782

Query: 559 SLIRDIMREKHVGKLPGCSW 578
             IR  ++EK + K PG SW
Sbjct: 783 RRIRTWLKEKGLRKPPGISW 802



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 135/550 (24%), Positives = 247/550 (44%), Gaps = 45/550 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C   +++  GK +H       +++  + +   ++  Y +CG   DA  +FD M
Sbjct: 56  LPLVLKACAAQNAVERGKSIHRSIQGTDLMDD-VRVGTAVVDFYCKCGFVEDARCVFDAM 114

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGK 125
             R+   WNAM+ G++  G  E+++ L   M ++N    S  M+    A    + L  G+
Sbjct: 115 SDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGR 174

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H + L NG+ FDS                             +    +ALI  Y    
Sbjct: 175 GVHGYCLRNGM-FDS-----------------------------NPHVATALIGFYLRF- 203

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            M     +FD     + V WN+MISGY    +  +AL LF +M  + V  D  T+   + 
Sbjct: 204 DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQ 263

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC+ LG L+ GKQ+H  A K   ++D+ + +ALL+ YS  G    + +LF  +   D  L
Sbjct: 264 ACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPL 323

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQ----NGSPIEALDLFCNM 360
            N+MI+ Y++ G  E+A  +F  M ++ +     ++++ LS         ++   L  ++
Sbjct: 324 WNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHV 383

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD 420
            K  +R+D     +++S    ++ +E  +++F R+  + + S   +  +L     +    
Sbjct: 384 IKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRA--Q 441

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCM 479
           A  LF  MR + +KP   T  +IL+AC+    +  G+      MK    I+  +   + +
Sbjct: 442 ACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLR--TAL 499

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
            D++   G    A +L E  P + D+  W++++   V +        +  RMI     N+
Sbjct: 500 ADMYMNCGDEATARDLFEGCP-DRDLISWNAMIASYVKNNQAHKALLLFHRMISEAEPNS 558

Query: 540 CAYIQLSSIF 549
              I + S F
Sbjct: 559 VTIINVLSSF 568



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 112/497 (22%), Positives = 197/497 (39%), Gaps = 104/497 (20%)

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA--ALEYGKQIHSHIL 132
           WN++I+    L + +  L  +  M        N  +    KA  A  A+E GK IH  I 
Sbjct: 21  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 80

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
              L  D  +G+++V+ Y KCG    A  V + M + D                      
Sbjct: 81  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRD---------------------- 118

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
                     V+WN+M+ GY+      EA+LL  +M R  +  ++ T+ ++L AC     
Sbjct: 119 ---------VVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASE 169

Query: 253 LEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
           L  G+ VHG+  + G+ D +  VA+AL+  Y +                +D  +L  +  
Sbjct: 170 LRLGRGVHGYCLRNGMFDSNPHVATALIGFYLR----------------FDMRVLPLL-- 211

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
                         F  M  ++++SWN+MI G    G   +AL+LF  M   +++ D  +
Sbjct: 212 --------------FDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVT 257

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK--------------- 416
           +   + ACA + SL+LG+Q+           D  I  +L++ Y                 
Sbjct: 258 MLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVP 317

Query: 417 ------------------CGYDALALFNEMRNTGVKPTIITFTAILSACDH--CGLVKEG 456
                             C  +A+ LF  M++ GVK    T   +LS C+    GL+K  
Sbjct: 318 NRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGK 377

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
                 +K    ID  + +   ++ ++    C+     + ++M    D+  W++++    
Sbjct: 378 SLHAHVIKSGMRIDASLGN--ALLSMYTELNCVESVQKIFDRMK-GVDIISWNTMILALA 434

Query: 517 AHGDKGLGRKVAERMIE 533
            +  +    ++ ERM E
Sbjct: 435 RNTLRAQACELFERMRE 451


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 241/494 (48%), Gaps = 64/494 (12%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL   +Q+H+    +G   D    + L+  Y   GD  +A ++   +   +    + L  
Sbjct: 118 ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFG 177

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GY   G +  AR++FD   + +   WN+M++G  +   D E+L  F  MRR G+  D   
Sbjct: 178 GYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFG 237

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L SV   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +               
Sbjct: 238 LGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR--------------- 282

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG +++ + + R +P+ S++S N++I G +QNG    AL+ FC 
Sbjct: 283 ----------------CGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCM 326

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M  + +  D  +  S IS+C+++++L  G+Q+  +V   G+D    + T LV  Y +CG 
Sbjct: 327 MRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 386

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF +M N G +P+ +TF A+L A
Sbjct: 387 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYA 446

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL +EG   F+ M   Y + P ++HY+C+VDL  R+GCL+EA  LI  MP   D  
Sbjct: 447 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGV 506

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C    +  +  ++A+R+IELDP ++ +Y+ LS+I ATS  W   S +R  MR
Sbjct: 507 IWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMR 566

Query: 567 EKHVGKLPGCSWAD 580
           + +V K PG SW +
Sbjct: 567 DNNVRKEPGVSWVE 580



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 163/375 (43%), Gaps = 69/375 (18%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           +QLH      G        AN L+  Y   G+ T A  LF+ +PRRN  SWN +  G++K
Sbjct: 123 RQLHAFAATSGAATDRF-TANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIK 181

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAK----------------------------- 115
            G    + +LF+ MP++N  +WN +++G                                
Sbjct: 182 NGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSV 241

Query: 116 ----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
               A L  +  G+Q+H++++ +GLD D  +GSSL ++Y +CG       VL M+     
Sbjct: 242 FRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPS--- 298

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
                                        S V  N++I+G   N +   AL  F  MR  
Sbjct: 299 ----------------------------LSIVSCNTIIAGRTQNGDSEGALEYFCMMRSV 330

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           GV  D  T  S +S+CS L  L  G+Q+HG   K GV   V V + L+  YS+ G   D+
Sbjct: 331 GVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDS 390

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQN 347
            ++F      DT LL+ MI+ Y   G  + A  +F+ M N     S +++ +++   S +
Sbjct: 391 ERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHS 450

Query: 348 GSPIEALDLFCNMNK 362
           G   E +D F  M K
Sbjct: 451 GLKEEGMDCFELMTK 465



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 17/198 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC+   ++  G+Q+H   +K G+ +  +P+   L+ MY RCG   D+  +F      +
Sbjct: 343 ISSCSDLAALAQGQQIHGQVMKAGV-DKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSD 401

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLI-----SGFAKADLAALE 122
            F  +AMI  +   GH +K+++LF  M     + +D ++  L+     SG  +  +   E
Sbjct: 402 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 461

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALISGY 181
              + +      G+       + +V+L G+ G  + A   +L+M   PD      L+S  
Sbjct: 462 LMTKTY------GMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSAC 515

Query: 182 ANCGKMNDARRVFDRTTD 199
                 + A R+  R  +
Sbjct: 516 KTQKNFDMAERIAKRVIE 533


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 263/495 (53%), Gaps = 66/495 (13%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL+ GKQ+H+HI  +G      + + L+++Y KCG    A +V + M   D    + +IS
Sbjct: 134 ALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMIS 192

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DAS 238
           GY   G    AR +FD+  +  +  W ++ISG + +N   EAL L+  M+++   + +  
Sbjct: 193 GYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKC 252

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T++S L+A +++  L  GK++HGH  ++G+  D +V  +LLD Y K              
Sbjct: 253 TISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGK-------------- 298

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                            CG IE+A++IF  M  + ++SW +MI    +NG   E   LF 
Sbjct: 299 -----------------CGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFR 341

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           ++   ++  + F+ A V++ACA++++ +LG+Q+ A +  +G DS    +++LV  Y KCG
Sbjct: 342 HLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCG 401

Query: 419 --------------------------------YD-ALALFNEMRNTGVKPTIITFTAILS 445
                                           +D AL  F  +  +G KP  I F  +LS
Sbjct: 402 DIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLS 461

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV +G ++F ++K ++ +   I+HY+C++DL ARAG   EA ++I +MP + D 
Sbjct: 462 ACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDK 521

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +W+++L GC  HG+  L ++ A+ + E++PEN   Y+ L++I+A++G   + + IR+ M
Sbjct: 522 YIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETM 581

Query: 566 REKHVGKLPGCSWAD 580
             + + K PG SW +
Sbjct: 582 DSRGIVKKPGMSWIE 596



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 160/545 (29%), Positives = 245/545 (44%), Gaps = 112/545 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C    ++  GKQ+H H    G +   L I+NRLL MY +CG+  DA  +FDEM  R
Sbjct: 125 LLKFCLKQRALKEGKQVHAHIKTSGSIG--LYISNRLLDMYAKCGSLVDAEKVFDEMVHR 182

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG------------------ 112
           +  SWN MI G++K G+ EK+  LF+ MP +++FSW  +ISG                  
Sbjct: 183 DLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQ 242

Query: 113 ---FAKAD-------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
              ++K++             + +L  GK+IH HI+  GLD D V+  SL+++YGKCG  
Sbjct: 243 KHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSI 302

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
             A  + + M+E D                                V W +MI  Y+ N 
Sbjct: 303 EEARYIFDKMEERD-------------------------------VVSWTTMIHTYLKNG 331

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
              E   LF  +  + ++ +  T A VL+AC+ L   + GKQ+H +  +VG       AS
Sbjct: 332 RREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAAS 391

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           AL+  YSK                               CG IE+AK +F  +P   L S
Sbjct: 392 ALVHMYSK-------------------------------CGDIENAKSVFEILPQPDLFS 420

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           W S++VG +Q+G   +AL  F  + K   + D  +   V+SACA+   ++ G + F  + 
Sbjct: 421 WTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIK 480

Query: 397 II-GLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
              GL         ++D   + G   +A ++ NEM    +KP    + A+L  C   G +
Sbjct: 481 EKHGLTRTIDHYACIIDLLARAGQFTEAESIINEM---PIKPDKYIWAALLGGCRIHGNL 537

Query: 454 KEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV---GM-W 508
           +  ++   A K  + I+PE    Y  + +++A AG   E  N+ E M     V   GM W
Sbjct: 538 ELAKR---AAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSW 594

Query: 509 SSILR 513
             I R
Sbjct: 595 IEIRR 599



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 182/385 (47%), Gaps = 42/385 (10%)

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           EA+ L +++ +      AS   ++L  C     L+ GKQVH H    G I  + +++ LL
Sbjct: 106 EAVQLLYRIEK----PYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSI-GLYISNRLL 160

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
           D Y+K G   DA K+F E+   D    N MI+ Y   G  E A+++F  MPN+   SW +
Sbjct: 161 DMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTA 220

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTII 398
           +I G  Q+  P EAL+L+  M K D  + +K +++S ++A A I SL +G+++   +  +
Sbjct: 221 IISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRM 280

Query: 399 GLDSDQIISTSLVDFYCKCG---------------------------------YDALALF 425
           GLDSD+++  SL+D Y KCG                                  +  ALF
Sbjct: 281 GLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALF 340

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
             + N+ + P   TF  +L+AC        G K   A   +   D      S +V ++++
Sbjct: 341 RHLMNSNIMPNDFTFAGVLNACADLAAEDLG-KQIHAYMVRVGFDSFSSAASALVHMYSK 399

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQ 544
            G +  A ++ E +P + D+  W+S+L G   HG         E +++   + +  A+I 
Sbjct: 400 CGDIENAKSVFEILP-QPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIG 458

Query: 545 LSSIFATSGEWEKSSLIRDIMREKH 569
           + S  A +G  +K       ++EKH
Sbjct: 459 VLSACAHAGLVDKGLEYFHSIKEKH 483



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 99/193 (51%), Gaps = 13/193 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C    +  +GKQ+H + ++ G  +S    A+ L+ MY +CG+  +A  +F+ +
Sbjct: 355 FAGVLNACADLAAEDLGKQIHAYMVRVG-FDSFSSAASALVHMYSKCGDIENAKSVFEIL 413

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--AL 121
           P+ + FSW +++ G+ + G  +K+L  F ++     + +  ++  ++S  A A L    L
Sbjct: 414 PQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGL 473

Query: 122 EYGKQI-HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALIS 179
           EY   I   H L   +D  +     +++L  + G F  A  ++N M  +PD +  +AL+ 
Sbjct: 474 EYFHSIKEKHGLTRTIDHYAC----IIDLLARAGQFTEAESIINEMPIKPDKYIWAALLG 529

Query: 180 GYANCGKMNDARR 192
           G    G +  A+R
Sbjct: 530 GCRIHGNLELAKR 542


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 151/473 (31%), Positives = 255/473 (53%), Gaps = 41/473 (8%)

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D+V  +S++  Y K G F+ + ++  +M   +    +++I+G     ++++A + F    
Sbjct: 5   DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMP 64

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
             ++  WN+MISG +  +   EA  LF +M R  V+    +  +++   + +G +E  + 
Sbjct: 65  QRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVI----SYTAMVDGYAKIGEIEQARA 120

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +     +  V+   ++ S     Y + G   +A  LF ++   + + +  MIT Y   G+
Sbjct: 121 LFNCMPQKNVVSWTVMISG----YVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGK 176

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
            + AK +F  +P + L SWN+MI G +QNGS  EAL L   M K+ ++ D  +L SV++A
Sbjct: 177 TDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTA 236

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------- 418
           C++++SL+ G +    V   G +S   I  +L+  YCKCG                    
Sbjct: 237 CSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSW 296

Query: 419 ------------YD-ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                       YD ALA F EMR+  V+P  ITF ++LSAC H G V E   WF++M  
Sbjct: 297 NAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIE 356

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
            Y I P  EH++C+VD+ +R G + +A  +I++MPFEAD G+W ++L  C  H +  LG 
Sbjct: 357 SYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGE 416

Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
             A++++EL+P+N+ AY+ LS+I+A +G W + + +R +MRE+ V K P  SW
Sbjct: 417 LAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSW 469



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C++  S+  G++ H+  LK G   S + I N L+ MY +CG+  D+ L F ++
Sbjct: 230 LISVLTACSSLASLQEGRKTHVLVLKSG-YESRISICNALITMYCKCGSILDSELAFRQI 288

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
              +  SWNAMI  F + G  +++L  F  M
Sbjct: 289 DHPDVVSWNAMIAAFARHGFYDRALASFGEM 319


>gi|224107245|ref|XP_002314420.1| predicted protein [Populus trichocarpa]
 gi|222863460|gb|EEF00591.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 164/571 (28%), Positives = 284/571 (49%), Gaps = 43/571 (7%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KN 102
           ++  Y++ GN  DA  LF+ MP++ C S+  MI GF+K     ++++++  M       N
Sbjct: 1   MISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVVPN 60

Query: 103 DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 162
           + +   +IS   +  +  +   + +H  ++    D   ++ ++L+N+Y        A  +
Sbjct: 61  EVTMASVISACCR--VGRIWDCRMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARAL 118

Query: 163 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 222
            + M+E +    + +++GY+  G  N A+ VF+   D   V W ++I GY+      EAL
Sbjct: 119 FDEMQEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREAL 178

Query: 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
           +++  M   G+     T+  ++SAC     +  G+Q+H    K        V + ++  Y
Sbjct: 179 MMYRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHFY 238

Query: 283 SKRGMPSDACKLFSELKVYDTIL-LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
           S  G  ++AC    E  + D +   N +I  +     I+ A+ +F  MP + + SW++MI
Sbjct: 239 SACGRINEACFQL-EFGMKDHVASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMI 297

Query: 342 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 401
            G +Q+  P  AL+LF  M    +R ++ ++ SV SA A + +L+ G      V    + 
Sbjct: 298 SGYTQSDQPGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIP 357

Query: 402 SDQIISTSLVDFYCKCGY--DALALFNEMRNTG--------------------------- 432
            +  +S S++D Y KCG    AL +F ++R+                             
Sbjct: 358 LNDNLSASIIDMYAKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYS 417

Query: 433 ------VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
                 +K + ITF  +LSAC H GLV  G+ +F +MK +Y+IDP+I HY CMVDL  +A
Sbjct: 418 DLQRRHIKLSAITFIGVLSACCHAGLVGLGKSYFKSMKSKYNIDPDIRHYGCMVDLLGKA 477

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G L E   LI  MP +ADV +W  +L  C  H +  +G + AE + +LDP +  + I LS
Sbjct: 478 GRLEEVEELIRSMPMKADVVIWGMLLSACKTHRNITIGERAAENLAKLDPSHGPSRILLS 537

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +++A  G WE + L+R +M+   + +LPG S
Sbjct: 538 NLYADVGRWEDAFLVRRVMQSHRMHRLPGYS 568



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/477 (22%), Positives = 214/477 (44%), Gaps = 71/477 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A ++ +C     I   + LH   + K + +  + ++  LL MY    +  +A  LFDEM
Sbjct: 64  MASVISACCRVGRIWDCRMLH-GLVIKMMFDGFVLVSTNLLNMYCASSSLGEARALFDEM 122

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD---------- 117
             +N  SWN M+ G+ K G    + ++F ++P K+  SW  +I G+ + +          
Sbjct: 123 QEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREALMMYR 182

Query: 118 -----------------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                    A+  G+Q+H  ++    D    + +++++ Y  CG
Sbjct: 183 LMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHFYSACG 242

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
             N A   L    +      +ALI+G+     ++ AR +F+   +     W++MISGY  
Sbjct: 243 RINEACFQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMISGYTQ 302

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           +++   AL LFH+M  +G+  +  T+ SV SA ++LG L+ G+  H +     +  +  +
Sbjct: 303 SDQPGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIPLNDNL 362

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-- 332
           +++++D Y+K                               CG I  A  +F  + +K  
Sbjct: 363 SASIIDMYAK-------------------------------CGSINTALEVFYQIRDKAS 391

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
           ++  WN++I GL+ +G    +L+++ ++ +  +++   +   V+SAC +   + LG+  F
Sbjct: 392 TVSPWNTIICGLATHGHAKLSLEIYSDLQRRHIKLSAITFIGVLSACCHAGLVGLGKSYF 451

Query: 393 ARV-TIIGLDSDQIISTSLVDFYCKCGYDALALFNEM-RNTGVKPTIITFTAILSAC 447
             + +   +D D      +VD   K G   L    E+ R+  +K  ++ +  +LSAC
Sbjct: 452 KSMKSKYNIDPDIRHYGCMVDLLGKAG--RLEEVEELIRSMPMKADVVIWGMLLSAC 506


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 285/609 (46%), Gaps = 103/609 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L+  C +      G  +H   L+   L+S++ + N L+ MY   G  +DA  LF  M
Sbjct: 249 LCSLMSVCASSDHFSHGSGIHSLCLRSS-LDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSL----QLFNVMPQKNDFSWNMLISGFAKADLAALEY 123
            RR+  SWN MI  +++  +   +L    QLF+     N  +++  +   A +   AL  
Sbjct: 308 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALG--ACSSPGALID 365

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK +H+ +L   L  + ++G+SL+ +YGK                               
Sbjct: 366 GKMVHAIVLQLSLQRNLLVGNSLITMYGK------------------------------- 394

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C  M DA +VF        V +N +I GY    + T+A+ +F  MR  G+  +  T+ ++
Sbjct: 395 CNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 454

Query: 244 L-SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
             S  SS     +G+ +H +  + G + D  VA                           
Sbjct: 455 HGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVA--------------------------- 487

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
               N++IT+Y+ CG +E + +IF ++ NK+++SWN++I    Q G   EAL LF +M  
Sbjct: 488 ----NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQH 543

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
              ++D+  LA  +S+CA+++SLE G Q+       GLDSD  +  + +D Y KCG    
Sbjct: 544 AGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDE 603

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +A   F +M  TG KP  +TF A+LSAC H
Sbjct: 604 MLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSH 663

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
            GLV +G  ++++M   + + P I+H  C+VDL  R G   EA   IE+MP   +  +W 
Sbjct: 664 AGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWR 723

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           S+L     H +  +GRK A++++ELDP +  AY+ LS+++AT+  W     +R  M+  +
Sbjct: 724 SLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTIN 783

Query: 570 VGKLPGCSW 578
           + K P CSW
Sbjct: 784 INKRPACSW 792



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 130/533 (24%), Positives = 241/533 (45%), Gaps = 58/533 (10%)

Query: 8   LARLLQSCNTH---HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           LA L+ +C        I  G  +H    + G++ +   I   LL +Y   G  +DA  LF
Sbjct: 44  LASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVY-IGTALLHLYGSRGIVSDAQRLF 102

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSWNMLISGFAKADL 118
            EMP RN  SW A++      G+ E++L+ +  M +       N F+  + + G  + ++
Sbjct: 103 WEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEV 162

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L    Q+ S ++V+GL     + +SL+ ++G                           
Sbjct: 163 PGL----QVASQVIVSGLQNQVSVANSLITMFG--------------------------- 191

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
               N G+++DA ++FDR  +  ++ WN+MIS Y      ++  L+F  MR +G+  DA+
Sbjct: 192 ----NLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDAT 247

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL S++S C+S     HG  +H    +  +   V V +AL++ YS  G  SDA  LF  +
Sbjct: 248 TLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307

Query: 299 KVYDTILLNTMITVY----SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
              D I  NTMI+ Y    +S   ++    +F T  + + ++++S +   S  G+ I+  
Sbjct: 308 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGK 367

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            +   + +L L+ +     S+I+     +S+E  E+VF  +       D +    L+  Y
Sbjct: 368 MVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPT----HDIVSYNVLIGGY 423

Query: 415 C--KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
              + G  A+ +F+ MR+ G+KP  IT   I  +      +    +   A   +     +
Sbjct: 424 AVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSD 483

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV--AHGDKGL 523
               + ++ ++A+ G L  + N+   +    ++  W++I+   V   HG++ L
Sbjct: 484 EYVANSLITMYAKCGNLESSTNIFNSIT-NKNIVSWNAIIAANVQLGHGEEAL 535



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 151/358 (42%), Gaps = 73/358 (20%)

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           DRT  T    W + +SG +    D  A  +   MR  GV      LAS+++AC   G  E
Sbjct: 3   DRTPST----WYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDE 58

Query: 255 H---GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
               G  +H    + G++ +V + +ALL  Y  RG+ SDA +LF E+   + +    ++ 
Sbjct: 59  GIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMV 118

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
             SS G +E+A   +R M                ++G P       CN N         +
Sbjct: 119 ALSSNGYLEEALRAYRQM---------------RRDGVP-------CNAN---------A 147

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFN--- 426
            A+V+S C ++ +   G QV ++V + GL +   ++ SL+  +   G  +DA  LF+   
Sbjct: 148 FATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRME 207

Query: 427 ----------------------------EMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                       +MR+ G++P   T  +++S C        G  
Sbjct: 208 EHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSG 267

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
              ++  +  +D  +   + +V++++ AG L++A  L   M    D+  W++++   V
Sbjct: 268 -IHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMS-RRDLISWNTMISSYV 323



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC---ANISSL 385
           M +++  +W + + G  + G    A ++   M +  + +  F+LAS+++AC        +
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAI 443
             G  + A     GL  +  I T+L+  Y   G   DA  LF EM     +  ++++TA+
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMP----ERNVVSWTAL 116

Query: 444 LSACDHCGLVKEGQKWFDAMK 464
           + A    G ++E  + +  M+
Sbjct: 117 MVALSSNGYLEEALRAYRQMR 137


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 241/494 (48%), Gaps = 64/494 (12%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL   +Q+H+    +G   D    + L+  Y   GD  +A ++   +   +    + L  
Sbjct: 122 ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFG 181

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GY   G +  AR++FD   + +   WN+M++G  +   D E+L  F  MRR G+  D   
Sbjct: 182 GYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFG 241

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L SV   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +               
Sbjct: 242 LGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR--------------- 286

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG +++ + + R +P+ S++S N++I G +QNG    AL+ FC 
Sbjct: 287 ----------------CGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCM 330

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M  + +  D  +  S IS+C+++++L  G+Q+  +V   G+D    + T LV  Y +CG 
Sbjct: 331 MRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 390

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF +M N G +P+ +TF A+L A
Sbjct: 391 LGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYA 450

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL +EG   F+ M   Y + P ++HY+C+VDL  R+GCL+EA  LI  MP   D  
Sbjct: 451 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGV 510

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C    +  +  ++A+R+IELDP ++ +Y+ LS+I ATS  W   S +R  MR
Sbjct: 511 IWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMR 570

Query: 567 EKHVGKLPGCSWAD 580
           + +V K PG SW +
Sbjct: 571 DNNVRKEPGVSWVE 584



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 169/392 (43%), Gaps = 72/392 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L ++C     +   +QLH      G        AN L+  Y   G+ T A  LF+ +
Sbjct: 113 FSHLFRACRALRPL---RQLHAFAATSGAATDRF-TANHLMLAYADLGDLTAARELFERI 168

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
           PRRN  SWN +  G++K G    + +LF+ MP++N  +WN +++G               
Sbjct: 169 PRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFL 228

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                A L  +  G+Q+H++++ +GLD D  +GSSL ++Y +CG
Sbjct: 229 DMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCG 288

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
                  VL M+                                  S V  N++I+G   
Sbjct: 289 CLQEGEAVLRMLPS-------------------------------LSIVSCNTIIAGRTQ 317

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N +   AL  F  MR  GV  D  T  S +S+CS L  L  G+Q+HG   K GV   V V
Sbjct: 318 NGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPV 377

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--- 331
            + L+  YS+ G   D+ ++F      DT LL+ MI+ Y   G  + A  +F+ M N   
Sbjct: 378 MTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGA 437

Query: 332 -KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
             S +++ +++   S +G   E +D F  M K
Sbjct: 438 EPSDVTFLALLYACSHSGLKEEGMDCFELMTK 469



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 17/198 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC+   ++  G+Q+H   +K G+ +  +P+   L+ MY RCG   D+  +F      +
Sbjct: 347 ISSCSDLAALAQGQQIHGQVMKAGV-DKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSD 405

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLI-----SGFAKADLAALE 122
            F  +AMI  +   GH +K+++LF  M     + +D ++  L+     SG  +  +   E
Sbjct: 406 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 465

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALISGY 181
              + +      G+       + +V+L G+ G  + A   +L+M   PD      L+S  
Sbjct: 466 LMTKTY------GMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSAC 519

Query: 182 ANCGKMNDARRVFDRTTD 199
                 + A R+  R  +
Sbjct: 520 KTQKNFDMAERIAKRVIE 537


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 182/609 (29%), Positives = 280/609 (45%), Gaps = 97/609 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  LQSC     + +G+ LH   +  G   ++  +AN L+ MY  C +   A+ LFD M
Sbjct: 20  LAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAM 79

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
           PR N  SW  ++ G  +      +L  F+ M +         +S  A+A  A        
Sbjct: 80  PRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGA 139

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
             H +   L FD+ L                             F  S L   Y+  G +
Sbjct: 140 QLHCVGVRLGFDAEL-----------------------------FVASNLADMYSKSGLL 170

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL-EDASTLASVLSA 246
            +A RVFD+     +V W +MI GY  N     A++ F  MRR G++  D   L SVLSA
Sbjct: 171 VEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSA 230

Query: 247 CSSL--GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
              L  G+L   + +H    K G   +V V +AL D Y+K     +A ++       D  
Sbjct: 231 SGGLKDGWL--ARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVK----IDQG 284

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
            LN                          ++S  S+I G  +     +AL +F  + +  
Sbjct: 285 SLN--------------------------VVSATSLIDGYIETDCIEKALLMFIELRRQG 318

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           +  ++F+ +S+I  CA  + LE G Q+ A V    L SD  +S++L+D Y KCG      
Sbjct: 319 VEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSI 378

Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +A+  F+ M ++G++P  ITF ++L+AC H G
Sbjct: 379 QLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAG 438

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV EG K+F +MK  + I+P+ EHYSC++D++ RAG L+EA   I +MP + +   W S+
Sbjct: 439 LVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSL 498

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C   G+K LG   A+ M++L+P+N   ++ LS I+A+ G+WE    +R +MR+  + 
Sbjct: 499 LGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIK 558

Query: 572 KLPGCSWAD 580
           KLPG SW D
Sbjct: 559 KLPGFSWVD 567


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 165/579 (28%), Positives = 285/579 (49%), Gaps = 63/579 (10%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           AN  +    R GN   A   F+ MP R   S+NA++ G+ +    + +L++F+ MP ++ 
Sbjct: 20  ANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPTRDL 79

Query: 104 FSWNMLISGF---------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
            S+N LISG          A A LA + Y   + S              +SL+  Y + G
Sbjct: 80  ASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSF-------------TSLLRGYVRHG 126

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
               A Q+   M E +    + L+ G+ + G++++AR++FD       V W +M+SGY  
Sbjct: 127 LLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQ 186

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
                EA  LF +M +  V+    +  +++S  +  G +   +++     +V    + + 
Sbjct: 187 VGRVDEARTLFDEMPKRNVV----SWTAMVSGYAQNGQVNLARKL----FEVMPERNEVS 238

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            +A+L  Y + G   DA +LF+ +  +     N MI  +   G ++ AK +F  M  +  
Sbjct: 239 WTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDD 298

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
            +W+++I    QN   +EAL  F  M  + +R +  S+ S+++ CA ++ L+ G +V   
Sbjct: 299 GTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGA 358

Query: 395 VTIIGLDSDQIISTSLVDFYCKCG---------------------------------YDA 421
           +     D D    ++L+  Y KCG                                  +A
Sbjct: 359 MLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEA 418

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           L +F++MR  G+ P  IT+   L+AC + G VKEG+  F++M+ +  I P +EHY+CMVD
Sbjct: 419 LHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVD 478

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
           L  RAG ++EA+ LI+ MP E D  +W +++  C  H +  +    A++++EL+P NA  
Sbjct: 479 LLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGNAGP 538

Query: 542 YIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           Y+ LS I+ +SG WE +S +R  +  +H+ K  GCSW +
Sbjct: 539 YVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWIE 577



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 120/286 (41%), Gaps = 59/286 (20%)

Query: 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
           V+ A+A +   ++ G    A   F  + +  T   N ++  Y      + A  +F  MP 
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           + L S+N++I GLS                     + + +L    +A A I         
Sbjct: 77  RDLASYNALISGLS---------------------LRRHTLPDAAAALATIPY------- 108

Query: 392 FARVTIIGLDSDQIIS-TSLVDFYCKCGY--DALALFNEM--RNTGVKPTIITFTAILSA 446
                        ++S TSL+  Y + G   DA+ LF +M  RN       I++T +L  
Sbjct: 109 ----------PPSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNH------ISYTVLLGG 152

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
               G V E +K FD M  +     ++  ++ M+  + + G ++EA  L ++MP + +V 
Sbjct: 153 FLDAGRVDEARKLFDEMPAK-----DVVAWTAMLSGYCQVGRVDEARTLFDEMP-KRNVV 206

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACA----YIQLSSI 548
            W++++ G   +G   L RK+ E M E +  +  A    YIQ   I
Sbjct: 207 SWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRI 252


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 239/494 (48%), Gaps = 64/494 (12%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL   +Q+H+    +G   D    + L+  Y   GDF +A  +   + + +    + LI 
Sbjct: 57  ALPLLRQLHAFAATSGAAADRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIG 116

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GY   G +  AR++FD     +   WN+M++G  ++  + E+L  F  MRR G+  D   
Sbjct: 117 GYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYG 176

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L S+   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +               
Sbjct: 177 LGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMR--------------- 221

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG + D +   R +P+ +++S N+ I G +QNG    AL+ FC 
Sbjct: 222 ----------------CGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCL 265

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M    +  +  +  S +++C+++++L  G+Q+ A     G+D    + TSLV  Y +CG 
Sbjct: 266 MRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGC 325

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF +M   G +P  +TF  +L A
Sbjct: 326 LGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYA 385

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL  EG   F+ M   Y + P ++HY+C+VDL  R+GCLNEA +LI  MP + D  
Sbjct: 386 CSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGV 445

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C       +  ++AER+IELDP ++ +Y+ LS+I ATS  WE  S +R+ MR
Sbjct: 446 IWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMR 505

Query: 567 EKHVGKLPGCSWAD 580
           E++V K PG SW +
Sbjct: 506 EQNVRKEPGVSWVE 519



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 72/358 (20%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           AN LL  Y   G+   A  LF+ +P+RN  SWN +I G++K G  E + +LF+ MP +N 
Sbjct: 80  ANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNV 139

Query: 104 FSWNMLISGFAKADL----------------AALEY-----------------GKQIHSH 130
            +WN +++G   + L                   EY                 G+Q+H++
Sbjct: 140 ATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAY 199

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
           ++ +GLD D  +GSSL ++Y +CG        L  +                        
Sbjct: 200 VVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRAL------------------------ 235

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                     + V  N+ ISG   N +   AL  F  MR  GV  +A T  S +++CS L
Sbjct: 236 -------PSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDL 288

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             L  G+Q+H  A K GV   V V ++L+  YS+ G   D+ ++  E    D +L + MI
Sbjct: 289 AALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMI 348

Query: 311 TVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
           + Y   G  + A  +F+ M      PN+  +++ +++   S +G   E ++ F  M K
Sbjct: 349 SAYGFHGHGQKAVGLFKQMMAAGAEPNE--VTFLTLLYACSHSGLKDEGMNCFELMTK 404


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 144/426 (33%), Positives = 227/426 (53%), Gaps = 35/426 (8%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A ++FD     +  ++N +I  Y S+    +   L+ +M   G   +  +   + SAC+S
Sbjct: 35  AHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACAS 94

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L   + G+ +H H  K G   DV   +AL+D Y+K G+ S A K F E+ V D    N+M
Sbjct: 95  LSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSM 154

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMD 368
           I  Y+ CG +E A  +FR MP +++ SW +MI G +QNG   +AL +F  M  + ++R +
Sbjct: 155 IAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPN 214

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------- 419
           + +LASV+ ACAN+ +LE+GE++       G   +  +S +L++ Y +CG          
Sbjct: 215 EVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFE 274

Query: 420 -------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                    +A+ LF +M   G  P  +TF  +L AC H G+V 
Sbjct: 275 EIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVV 334

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EGQ +F++M+  + I P++EHY CMVDL  RAG L EA +LI +MP E D  +W ++L  
Sbjct: 335 EGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGA 394

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  HG   L  K A  + EL+P N   Y+ LS+I+AT+G W+  + +R +M+   + K  
Sbjct: 395 CSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAA 454

Query: 575 GCSWAD 580
           G S+ +
Sbjct: 455 GYSFIE 460



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 222/477 (46%), Gaps = 62/477 (12%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ+  + L+ GI ++      +L+   ++  +   A  LFD +P+   F +N +I+ +  
Sbjct: 5   KQIQAYTLRNGIEHT-----KQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSS 59

Query: 85  LGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
            G   +   L+  M       N+ S+  L S  A A L++ + G+ +H+H + +G   D 
Sbjct: 60  HGPHHQCFSLYTQMCLQGCSPNEHSFTFLFS--ACASLSSHQQGRMLHTHFVKSGFGCDV 117

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
              ++LV++Y K G  + A +  + M   D    +++I+GYA CG +  A  +F      
Sbjct: 118 FALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPAR 177

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQV 259
           +   W +MISGY  N +  +AL +F  M     +  +  TLASVL AC++LG LE G+++
Sbjct: 178 NVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERI 237

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
             +A   G   ++ V++ALL+ Y++                               CGRI
Sbjct: 238 EVYARGNGYFKNLYVSNALLEMYAR-------------------------------CGRI 266

Query: 320 EDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           + A  +F  +   ++L SWNSMI+GL+ +G   EA++LF  M +     D  +   V+ A
Sbjct: 267 DKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLA 326

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNT------- 431
           C +   +  G+  F       ++ D  I+  L  + C    D L    E+R         
Sbjct: 327 CTHGGMVVEGQHFFE-----SMERDFSIAPKLEHYGCMV--DLLGRAGELREAHDLILRM 379

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAG 487
            ++P  + +  +L AC   G V+  +K   A+   + ++P    +Y  + +++A AG
Sbjct: 380 PMEPDSVVWGTLLGACSFHGHVELAEKAAGAL---FELEPSNPGNYVILSNIYATAG 433



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 123/256 (48%), Gaps = 13/256 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L  +C +  S   G+ LH HF+K G       +   L+ MY + G  + A   FDEM  R
Sbjct: 88  LFSACASLSSHQQGRMLHTHFVKSGFGCDVFAL-TALVDMYAKLGLLSLARKQFDEMTVR 146

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +  +WN+MI G+ + G  E +L+LF +MP +N  SW  +ISG+A+      +Y K +   
Sbjct: 147 DVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNG----QYAKALSMF 202

Query: 131 ILV---NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF----CLSALISGYAN 183
           +++     +  + V  +S++      G      ++    +    F      +AL+  YA 
Sbjct: 203 LMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYAR 262

Query: 184 CGKMNDARRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
           CG+++ A  VF+      ++  WNSMI G   +    EA+ LF+KM R G   D  T   
Sbjct: 263 CGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVG 322

Query: 243 VLSACSSLGFLEHGKQ 258
           VL AC+  G +  G+ 
Sbjct: 323 VLLACTHGGMVVEGQH 338


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 183/646 (28%), Positives = 303/646 (46%), Gaps = 145/646 (22%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A  LQ C        GK LH   LK+G     L   N LL MY++     DA  LFDEMP
Sbjct: 42  ANALQDCIQKDEPSRGKGLHCEILKRGGC-LDLFAWNILLNMYVKSDFLCDASKLFDEMP 100

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYG 124
            RN  S+  +I+G+ +     ++++LF  + ++    N F +  ++      D   L +G
Sbjct: 101 ERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWG 160

Query: 125 KQIHSHILVNGLD-------------------------FDSVL------GSSLVNLYGKC 153
             IH+ I   G +                         FD +L       + +V  + + 
Sbjct: 161 --IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAEN 218

Query: 154 GDFNSANQVLNMMK----EPDDF--------CLS-------------------------- 175
             F  A ++ + M+    +P++F        CL                           
Sbjct: 219 DCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVG 278

Query: 176 -ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
            AL+  Y   G ++DARR F+       + W+ MI+ Y  +++  EA+ +F +MR+  VL
Sbjct: 279 VALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVL 338

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  T ASVL AC+++  L  G Q+H H  K+G+  DV V++AL+D              
Sbjct: 339 PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMD-------------- 384

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                            VY+ CGR+E++  +F   P+++ ++WN++IVG  Q G   +AL
Sbjct: 385 -----------------VYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKAL 427

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LF NM +  ++  + + +S + ACA++++LE G Q+                       
Sbjct: 428 RLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQI----------------------- 464

Query: 415 CKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                          +  VKP  +TF  +LSAC + GL+ +GQ +F +M   + I+P IE
Sbjct: 465 --------------HSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIE 510

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           HY+CMV L  R G L++AV LI+++PF+  V +W ++L  CV H D  LGR  A+R++E+
Sbjct: 511 HYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEM 570

Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +P++   ++ LS+++AT+  W+  + +R  M+ K V K PG SW +
Sbjct: 571 EPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIE 616


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  264 bits (675), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 164/577 (28%), Positives = 271/577 (46%), Gaps = 104/577 (18%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S++  +N ++ MY RCG   DA+ +FDE+   +  SW   I G    GH+  +++LF ++
Sbjct: 7   SSMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERI-GTASDGHE--AVELFRIV 63

Query: 99  PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
                                 L  G  ++ + L+N           ++++ G     N+
Sbjct: 64  ----------------------LSLGLDVNEYTLIN-----------VLSMIGGVKFLNA 90

Query: 159 ANQVLNMMKEPDDFCL----SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
             Q+  +  +   F +    +AL+S Y  CG++ DA RVF       SV WNS+IS    
Sbjct: 91  GKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRVFYNMIIRDSVSWNSLISACSE 150

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N    +AL +F++MR   +     TLAS+L A S+    +   Q+H    K G +     
Sbjct: 151 NGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNTKQVIQIHSLVVKCGFM----- 205

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
                                     +D  +++ +IT Y  C  ++++K +F  +   +L
Sbjct: 206 --------------------------FDVSMISCLITAYGRCNSMDESKRVFAEIDKVNL 239

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
           +  N+MI    + G   +AL L+  +  L  ++D  + + ++ AC+ I+ ++LG  V + 
Sbjct: 240 VHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSL 299

Query: 395 VTIIGLDSDQIISTSLVDFYCKCG---------------------------------YDA 421
           V   G D D  + +S++D YCKCG                                  + 
Sbjct: 300 VLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEV 359

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
             LFN+M   G++P  IT+  +LS+C H GLVKE + + D+M   + I P +EHY+CM+D
Sbjct: 360 FDLFNKMSQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMID 419

Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
           L  R G L +A   I+ MP + DV +W  +L  C  HG   LGR  A +++E+ PEN  A
Sbjct: 420 LLGRVGLLEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAARKLLEIHPENESA 479

Query: 542 YIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           YI LS+++A+ G W     +R  M+EK++ K PG SW
Sbjct: 480 YILLSNLYASVGMWNAVGRLRKEMKEKNLRKEPGSSW 516



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 118/489 (24%), Positives = 204/489 (41%), Gaps = 83/489 (16%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           ++ GKQ+     K G     + ++N L+ MY +CG   DA  +F  M  R+  SWN++I 
Sbjct: 88  LNAGKQIQALCHKTGYFQ-VVSVSNALVSMYGKCGQICDACRVFYNMIIRDSVSWNSLIS 146

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGK------QIHSHILVN 134
              + G   ++L++F    Q  + S    I   A   L A+          QIHS ++  
Sbjct: 147 ACSENGFVNQALEVFY---QMRELSLQPTIHTLASI-LEAVSNSNNTKQVIQIHSLVVKC 202

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           G  FD  + S L+  YG+C                                 M++++RVF
Sbjct: 203 GFMFDVSMISCLITAYGRCNS-------------------------------MDESKRVF 231

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
                 + V  N+MI+ ++     T+AL L+  +       D+ T + +L ACS++  ++
Sbjct: 232 AEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQ 291

Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
            G+ VH    K G   D  V S+++D Y K                              
Sbjct: 292 LGRAVHSLVLKTGFDQDSFVESSVIDIYCK------------------------------ 321

Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
            CG I  A+  FR+    SL +WN+M++G + +G   E  DLF  M++  +  D+ +   
Sbjct: 322 -CGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLG 380

Query: 375 VISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNT 431
           V+S+C +   ++       +   + G+         ++D   + G   DA    + M   
Sbjct: 381 VLSSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHM--- 437

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH-YSCMVDLFARAGCLN 490
            ++P +  +  +LSAC+  G V+ G+    A +    I PE E  Y  + +L+A  G  N
Sbjct: 438 PIQPDVHIWQILLSACNIHGHVELGRV---AARKLLEIHPENESAYILLSNLYASVGMWN 494

Query: 491 EAVNLIEQM 499
               L ++M
Sbjct: 495 AVGRLRKEM 503


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 171/560 (30%), Positives = 263/560 (46%), Gaps = 107/560 (19%)

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFA 114
           LLLFD +     F WN ++  F      +  L  ++      V+P ++ F   +L+  F+
Sbjct: 58  LLLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFP--LLLKAFS 115

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           K      E   Q ++HI+  GLDFD+                               F  
Sbjct: 116 KLRN---ENPFQFYAHIVKFGLDFDA-------------------------------FVQ 141

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           ++L+S +A+CG ++ +RR+F  T     V W ++I+G + N    EAL  F +MR +GV 
Sbjct: 142 NSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVE 201

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACK 293
            D  T+ SVL A + L  +  G+ VHG   + G VI DV V SAL+D YSK         
Sbjct: 202 VDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSK--------- 252

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                                 CG  +DA  +F  MP ++L+SW ++I G  Q     EA
Sbjct: 253 ----------------------CGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEA 290

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           L +F  M    +  ++ ++ S ++ACA + SL+ G  +   V    L  +  + T+LVD 
Sbjct: 291 LKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDM 350

Query: 414 YCKCG---------------------------------YDALALFNEMRNTGVKPTIITF 440
           Y KCG                                   +L LF++M  + V+P  +TF
Sbjct: 351 YSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTF 410

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +LSAC H GLV EG + F  M   Y ++P ++HY CMVDL  RAG L EA+  IE MP
Sbjct: 411 LGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMP 470

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
            E   G+W ++  GC+ H    LG  +   +I+L P ++  YI L+++++   +WE ++ 
Sbjct: 471 MEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAAN 530

Query: 561 IRDIMREKHVGKLPGCSWAD 580
           +R +M+ K V K P CSW +
Sbjct: 531 VRRLMKGKGVDKSPACSWIE 550



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 190/419 (45%), Gaps = 74/419 (17%)

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEP----DDFCLSALISGYANCGKMNDARRVFD 195
           + L  S++  + KCG F+  NQ  +++         F LS L+        +     +FD
Sbjct: 5   ATLRHSILCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSATK--DLGYTLLLFD 62

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           R       +WN+++  + ++++    L+ + ++R +GV+ D  T   +L A S L   E+
Sbjct: 63  RLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN-EN 121

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
             Q + H  K G           LD                    +D  + N++++ ++ 
Sbjct: 122 PFQFYAHIVKFG-----------LD--------------------FDAFVQNSLVSAFAH 150

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
           CG ++ ++ +F     K ++SW ++I G  +NG  +EAL+ F  M    + +D+ ++ SV
Sbjct: 151 CGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSV 210

Query: 376 ISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCGY--DALALFNEM--RN 430
           + A A +  +  G  V       G +  D  + ++LVD Y KCGY  DA+ +FNEM  RN
Sbjct: 211 LCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRN 270

Query: 431 -----------------------------TGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
                                         G++P   T T+ L+AC   G + +G +W  
Sbjct: 271 LVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQG-RWLH 329

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
               +  +    +  + +VD++++ GC++EA+ + E++P + DV  W++++ G    GD
Sbjct: 330 EYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAK-DVYPWTAMINGLAMRGD 387



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 131/287 (45%), Gaps = 42/287 (14%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H  +++ G +   + + + L+ MY +CG   DA+ +F+EMP RN  SW A+I G++
Sbjct: 223 GRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYV 282

Query: 84  KLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           +    +++L++F  M      P ++  +  +     A A L +L+ G+ +H ++  + L 
Sbjct: 283 QCNRYKEALKVFQEMIIEGIEPNQSTVTSALT----ACAQLGSLDQGRWLHEYVDRSKLG 338

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            +S LG++LV++Y KCG  + A  V   +   D +                         
Sbjct: 339 LNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVY------------------------- 373

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                  W +MI+G     +   +L LF +M R+ V  +  T   VLSAC+  G ++ G 
Sbjct: 374 ------PWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGL 427

Query: 258 QVHG-HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           ++     C   +  +V     ++D   + G   +A K    + +  T
Sbjct: 428 ELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPT 474


>gi|356519676|ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 728

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 187/648 (28%), Positives = 304/648 (46%), Gaps = 110/648 (16%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF 95
           ++++ + IA R      + G   +A  LFD+MP R   SWN MI G+  LG   ++L L 
Sbjct: 41  VISTNISIAQRF-----KMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLV 95

Query: 96  NVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151
           + M +     N+ S++ ++S  A++   +   GKQ+HS +L +G +   ++GS+L+    
Sbjct: 96  SFMHRSCVALNEVSFSAVLSACARS--GSFLLGKQVHSLLLKSGYERFGLVGSALLYFCV 153

Query: 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211
            C     A  V   +++ +    S +++GY     M+DA  +F++      V W ++ISG
Sbjct: 154 HCCGIREAEVVFEELRDGNQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISG 213

Query: 212 YISNNEDTE-ALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLE-----HGKQVHG--- 261
           Y    +  E AL LF  MRR+  VL +  TL  V+  C+ LG L      HG  + G   
Sbjct: 214 YAKREDGCERALDLFGCMRRSSEVLPNEFTLDCVVRVCARLGVLRAGKVVHGLCIKGGLD 273

Query: 262 -----------HACKVGVIDDVI-------------VASALLDTYSKRGMPSDACKLFSE 297
                        C    IDD               VA++L+     +G   +A  +F E
Sbjct: 274 FDNSIGGAVTEFYCGCEAIDDAKRVYESMGGQASLNVANSLIGGLVSKGRIEEAELVFYE 333

Query: 298 LKVYDTIL-------------------------------LNTMITVYSSCGRIEDAKHIF 326
           L+  + +                                LNTMI+VYS  G +++A  +F
Sbjct: 334 LRETNPVSYNLMIKGYAMSGQFEKSKRLFEKMSPENLTSLNTMISVYSKNGELDEAVKLF 393

Query: 327 -RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385
            +T   ++ +SWNSM+ G   NG   EAL+L+  M +L +   + + + +  AC+ + S 
Sbjct: 394 DKTKGERNYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACSCLCSF 453

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------------------------- 419
             G+ + A +       +  + T+LVDFY KCG+                          
Sbjct: 454 RQGQLLHAHLIKTPFQVNVYVGTALVDFYSKCGHLAEAQRSFISIFSPNVAAWTALINGY 513

Query: 420 -------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                  +A+ LF  M + G+ P   TF  +LSAC+H GLV EG + F +M+  Y + P 
Sbjct: 514 AYHGLGSEAILLFRSMLHQGIVPNAATFVGVLSACNHAGLVCEGLRIFHSMQRCYGVTPT 573

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           IEHY+C+VDL  R+G L EA   I +MP EAD  +W ++L       D  +G + AE++ 
Sbjct: 574 IEHYTCVVDLLGRSGHLKEAEEFIIKMPIEADGIIWGALLNASWFWKDMEVGERAAEKLF 633

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            LDP    A++ LS+++A  G W + + +R  ++   + K PGCSW +
Sbjct: 634 SLDPNPIFAFVVLSNMYAILGRWGQKTKLRKRLQSLELRKDPGCSWIE 681



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 39/225 (17%)

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
           +E  V + I  N  I      G++E+A+H+F  MPN+++ SWN+MI G S  G   EAL 
Sbjct: 34  TEPHVGNVISTNISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALT 93

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           L   M++  + +++ S ++V+SACA   S  LG+QV +                      
Sbjct: 94  LVSFMHRSCVALNEVSFSAVLSACARSGSFLLGKQVHS-------------------LLL 134

Query: 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
           K GY+   L                +A+L  C HC  ++E +  F+ ++     D     
Sbjct: 135 KSGYERFGLVG--------------SALLYFCVHCCGIREAEVVFEELR-----DGNQVL 175

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
           +S M+  + +   +++A+++ E+MP   DV  W++++ G     D
Sbjct: 176 WSLMLAGYVKQDMMDDAMDMFEKMPVR-DVVAWTTLISGYAKRED 219


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 167/522 (31%), Positives = 262/522 (50%), Gaps = 49/522 (9%)

Query: 93   QLFNVMPQKNDFSWNMLISGFAKADL---AALEYGKQIHSHILVNGLDFDSVLGSSLVNL 149
            ++F  +     F WN L+ G A++D    A + Y K     +  + L F  VL +     
Sbjct: 895  KVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTC 954

Query: 150  YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
              K G+    N V+ +    D F  ++LI  YA CG +  AR VF+       V WNS+I
Sbjct: 955  APKEGE-QMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLI 1013

Query: 210  SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
             GY  +N   E L LF  M+   V  D  T+  V+SAC+ LG            C V  I
Sbjct: 1014 GGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMAD------CMVRYI 1067

Query: 270  D------DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
            +      DV + + L+D Y + G    A K+FS++K  +T+ LN MIT Y+  G +  AK
Sbjct: 1068 EHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAK 1127

Query: 324  HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
             IF  +PNK LISW+SMI   SQ     ++L+LF  M +  ++ D   +ASV+SACA++ 
Sbjct: 1128 KIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLG 1187

Query: 384  SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------ 419
            +L+LG+ +   V    + +D I+  SL+D + KCG                         
Sbjct: 1188 ALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIIL 1247

Query: 420  ---------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
                     +AL +F+ M   G +P  +TF  +L AC +  LV+EG   F+ MK  ++++
Sbjct: 1248 GLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLE 1307

Query: 471  PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAER 530
            P+++HY C+VD+ +RAG L +AV+ I +MP   D  +W  +L  C  HG+  +     ++
Sbjct: 1308 PQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKK 1367

Query: 531  MIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            + ELDP N+   + LS+I+A++  W  +  +R    +  VG+
Sbjct: 1368 LSELDPGNSADSMLLSNIYASADRWSDAMNVRRWTADNAVGE 1409



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/418 (29%), Positives = 209/418 (50%), Gaps = 39/418 (9%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A +VFD+    S   W + +  Y       EAL LF K  R  + +D      VL AC+ 
Sbjct: 437 ALKVFDQ----SPAPWRAFLKAYSHGPFPLEALHLF-KHARQHLADDTFVFTFVLKACAG 491

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           LG+   G Q+H    + G      V +AL++ Y       +A K+F E+ V + +  N M
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVM 551

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT ++  G +E A+ +F  MP ++++SW  +I G ++     EAL L  +M    +   +
Sbjct: 552 ITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSE 611

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            ++ +VI A +N+  + +GE +       G+ SD  +  SL+D Y K G           
Sbjct: 612 ITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDE 671

Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +AL LF EMR  G+KP  ITF ++++AC H GLV++
Sbjct: 672 MLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQ 731

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G  +F +M ++Y+IDPEI+H+ C++D+  RAG L EA  +IE +P E +V +W  +L  C
Sbjct: 732 GLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCC 791

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
             +G+  +G +  + + +L+ E+   +  LS++    G +  +   R ++ ++ + KL
Sbjct: 792 SKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKL 849



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/493 (27%), Positives = 247/493 (50%), Gaps = 48/493 (9%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            +L++C    +   G+Q+H H +K G L     ++N L+ +Y  CG    A  +F+EM  +
Sbjct: 946  VLKACAKTCAPKEGEQMHNHVIKLGFLLDIF-VSNSLIYLYAACGALACARSVFNEMLVK 1004

Query: 71   NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
            +  SWN++I G+ +    ++ L LF +M     Q +  +   +IS  A   L        
Sbjct: 1005 DVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVIS--ACTHLGDWSMADC 1062

Query: 127  IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
            +  +I  N ++ D  LG++L++ Y + G   SA +V + MK+ +   L+A+I+ YA  G 
Sbjct: 1063 MVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGN 1122

Query: 187  MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            +  A+++FD+  +   + W+SMI  Y   +  +++L LF +M+R  V  DA  +ASVLSA
Sbjct: 1123 LVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSA 1182

Query: 247  CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
            C+ LG L+ GK +H +  +  +  D I+ ++L+D ++K G   +A ++F++++  DT+  
Sbjct: 1183 CAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTL-- 1240

Query: 307  NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                                         SWNS+I+GL+ NG   EALD+F +M     R
Sbjct: 1241 -----------------------------SWNSIILGLANNGFEDEALDIFHSMLTEGPR 1271

Query: 367  MDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGY--DALA 423
             ++ +   V+ ACAN   +E G   F R+ ++  L+        +VD   + G    A++
Sbjct: 1272 PNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVS 1331

Query: 424  LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV-DL 482
              +EM    + P  + +  +L AC   G V   +    A K    +DP     S ++ ++
Sbjct: 1332 FISEM---PLAPDPVVWRILLGACRTHGNVAVAEM---ATKKLSELDPGNSADSMLLSNI 1385

Query: 483  FARAGCLNEAVNL 495
            +A A   ++A+N+
Sbjct: 1386 YASADRWSDAMNV 1398



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 200/443 (45%), Gaps = 75/443 (16%)

Query: 115  KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG-KCGDFNSANQVLNMMKEPDDFC 173
            K   A +E  K++H+H++V+GL       S ++ LY     D  SA++V   ++ P  F 
Sbjct: 848  KLQEAVMEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTF- 906

Query: 174  LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                                          +WN+++ G   ++   +A++ + K +  G+
Sbjct: 907  ------------------------------LWNTLLRGLAQSDAPKDAIVFYKKAQEKGM 936

Query: 234  LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
              D  T   VL AC+     + G+Q+H H  K+G + D+ V+++L+  Y+  G  + A  
Sbjct: 937  KPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARS 996

Query: 294  LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-----------------LIS 336
            +F+E+ V D +  N++I  YS   R+++   +F+ M  +                  L  
Sbjct: 997  VFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGD 1056

Query: 337  W---NSMIVGLSQNGSPIEA------LDLFCNMNKLDLRMDKFS---------LASVISA 378
            W   + M+  +  N   ++       +D +C + +L      FS         L ++I+A
Sbjct: 1057 WSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITA 1116

Query: 379  CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPT 436
             A   +L   +++F ++     + D I  +S++  Y +  +  D+L LF +M+   VKP 
Sbjct: 1117 YAKGGNLVSAKKIFDQIP----NKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPD 1172

Query: 437  IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
             +   ++LSAC H G +  G KW      + +I  +    + ++D+FA+ GC+ EA+ + 
Sbjct: 1173 AVVIASVLSACAHLGALDLG-KWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVF 1231

Query: 497  EQMPFEADVGMWSSILRGCVAHG 519
              M  E D   W+SI+ G   +G
Sbjct: 1232 TDME-EKDTLSWNSIILGLANNG 1253



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 137/555 (24%), Positives = 238/555 (42%), Gaps = 67/555 (12%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            +L++C        G QLH   ++KG       +   L+ +Y+      +A  +FDEMP +
Sbjct: 485  VLKACAGLGWHRAGAQLHALVVQKGFEFHAY-VHTALINVYVMSRCLVEARKVFDEMPVK 543

Query: 71   NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
            N  SWN MI GF   G  E +  LF+ MP +N  SW  LI G+ +A L A      +  H
Sbjct: 544  NVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYA--EALTLLRH 601

Query: 131  ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP-----DDFCLSALISGYANCG 185
            ++  G+    +   +++      G      ++LN   E      D    ++LI  YA  G
Sbjct: 602  MMAGGISPSEITVLAVIPAISNLGGI-LMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIG 660

Query: 186  KMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
             + ++ +VFD   D  + V W S+ISG+  +    EAL LF +MRR G+  +  T  SV+
Sbjct: 661  SVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVI 720

Query: 245  SACSSLGFLEHG--------------KQVHGHACKVGVID-------------------D 271
            +ACS  G +E G               ++    C + ++                    +
Sbjct: 721  NACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVN 780

Query: 272  VIVASALLDTYSKRG---MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
            V V   LL   SK G   M   A K+ S+L+         +  V +  GR  DA+   + 
Sbjct: 781  VTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKL 840

Query: 329  MPNKSLISWNSMIVGLSQNGSPIEAL-DLFCNMNKLDLRMDKFSLASVISACA-NISSLE 386
            +  + ++     +         +EA+  L  ++    L   +++++ VI   A + S L 
Sbjct: 841  LDQRKIVKLQEAV---------MEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLV 891

Query: 387  LGEQVFARVTIIGLDSDQIISTSLVDFYCK--CGYDALALFNEMRNTGVKPTIITFTAIL 444
               +VF ++          +  +L+    +     DA+  + + +  G+KP  +TF  +L
Sbjct: 892  SAHKVFKQIE----SPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVL 947

Query: 445  SACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
             AC      KEG++  +  +K  + +D  I   + ++ L+A  G L  A ++  +M    
Sbjct: 948  KACAKTCAPKEGEQMHNHVIKLGFLLD--IFVSNSLIYLYAACGALACARSVFNEM-LVK 1004

Query: 504  DVGMWSSILRGCVAH 518
            DV  W+S++ G   H
Sbjct: 1005 DVVSWNSLIGGYSQH 1019


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 179/615 (29%), Positives = 295/615 (47%), Gaps = 106/615 (17%)

Query: 2   DTRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           + R D+     +L++C T   +  G+++H    K G   +   +A  L+ MY R G    
Sbjct: 213 EIRPDFYTFPPVLKACGT---LVDGRRIHCWAFKLGFQWNVF-VAASLIHMYSRFGFTGI 268

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAK-AD 117
           A  LFD+MP R+  SWNAMI G ++ G+  ++L + + M  +    ++  ++S       
Sbjct: 269 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQ 328

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           L  +     IH +++ +GL+FD  + ++L+N+Y K G+                      
Sbjct: 329 LGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGN---------------------- 366

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                    + DAR+ F +   T  V WNS+I+ Y  N++   A   F KM+ NG   D 
Sbjct: 367 ---------LEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDL 417

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLFS 296
            TL S+ S  +     ++ + VHG   + G +++DV++ +A++D Y+K G+   A K+F 
Sbjct: 418 LTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFE 477

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            + V D I  NT+IT                               G +QNG   EA+++
Sbjct: 478 IILVKDVISWNTLIT-------------------------------GYAQNGLASEAIEV 506

Query: 357 FCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           +  M +  ++  ++ +  S++ A A++ +L+ G ++  RV    L  D  ++T L+D Y 
Sbjct: 507 YKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYG 566

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG                                    L LF EM + GVKP  +TF +
Sbjct: 567 KCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVS 626

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +LSAC H G V+EG KW   +  +Y I P ++HY CMVDL  RAG L  A   I+ MP +
Sbjct: 627 LLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQ 685

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
            D  +W ++L  C  HG+  LG+  ++R+ E+D +N   Y+ LS+I+A  G+WE    +R
Sbjct: 686 PDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVR 745

Query: 563 DIMREKHVGKLPGCS 577
            + RE+ + K PG S
Sbjct: 746 SLARERGLKKTPGWS 760



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 138/586 (23%), Positives = 243/586 (41%), Gaps = 113/586 (19%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
            K LH   +  G + S   I+ RL+ +Y   G+ + +   FD++P+++ ++WN+MI  ++
Sbjct: 135 AKCLHALLVVAGKVQSIF-ISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 84  KLGHKEKSL----QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
             GH  +++    QL  V   + DF          KA    L  G++IH      G  ++
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDF---YTFPPVLKA-CGTLVDGRRIHCWAFKLGFQWN 249

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
             + +SL+++Y + G                        +G         AR +FD    
Sbjct: 250 VFVAASLIHMYSRFG-----------------------FTGI--------ARSLFDDMPF 278

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
                WN+MISG I N    +AL +  +MR  G+  +  T+ S+L  C  LG +     +
Sbjct: 279 RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLI 338

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H +  K G+  D+ V++AL++ Y+K G   DA K F ++ + D                 
Sbjct: 339 HLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITD----------------- 381

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
                         ++SWNS+I    QN  P+ A   F  M     + D  +L S+ S  
Sbjct: 382 --------------VVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 380 ANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCGY------------------- 419
           A     +    V   +   G L  D +I  ++VD Y K G                    
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISW 487

Query: 420 --------------DALALFNEMRN-TGVKPTIITFTAILSACDHCGLVKEGQKWFD-AM 463
                         +A+ ++  M     + P   T+ +IL A  H G +++G +     +
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVI 547

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL--RGCVAHGDK 521
           K   H+D  +   +C++D++ + G L +A++L  Q+P E+ V  W++I+   G   H +K
Sbjct: 548 KTNLHLDVFVA--TCLIDVYGKCGRLVDAMSLFYQVPQESSV-TWNAIISCHGIHGHAEK 604

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
            L +   E + E    +   ++ L S  + SG  E+      +M+E
Sbjct: 605 TL-KLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE 649



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 124/537 (23%), Positives = 218/537 (40%), Gaps = 96/537 (17%)

Query: 136 LDFDSVLGSSLVNLYGKC--GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
           +DF+ +  SS    + KC       A +V ++      F  + L++ YAN G ++ +R  
Sbjct: 120 IDFNFLFDSSTKTPFAKCLHALLVVAGKVQSI------FISTRLVNLYANLGDVSLSRCT 173

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-MRRNGVLEDASTLASVLSACSSLGF 252
           FD+        WNSMIS Y+ N    EA+  F++ +  + +  D  T   VL AC   G 
Sbjct: 174 FDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GT 230

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L  G+++H  A K+G   +V VA++L+  YS+ G    A  LF +               
Sbjct: 231 LVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDD--------------- 275

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
                           MP + + SWN+MI GL QNG+  +ALD+   M    ++M+  ++
Sbjct: 276 ----------------MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTV 319

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
            S++  C  +  +     +   V   GL+ D  +S +L++ Y K G              
Sbjct: 320 VSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFI 379

Query: 419 ------------YD-------ALALFNEMRNTGVKP---TIITFTAILSACDHCGLVKEG 456
                       Y+       A   F +M+  G +P   T+++  +I++    C   +  
Sbjct: 380 TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSV 439

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             +     W   +  ++   + +VD++A+ G L+ A  + E +    DV  W++++ G  
Sbjct: 440 HGFIMRRGW---LMEDVVIGNAVVDMYAKLGLLDSAHKVFEII-LVKDVISWNTLITGYA 495

Query: 517 AHGDKGLGRKVAERMIELDP--ENACAYIQLSSIFATSGEWEKSSLI--RDIMREKHVGK 572
            +G      +V + M E      N   ++ +   +A  G  ++   I  R I    H+  
Sbjct: 496 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDV 555

Query: 573 LPGCSWADGIAFNCWFLDTMFLQLANFDEIKQHQSADF-----CDYIHGFDQARLPL 624
                  D        +D M L    F ++ Q  S  +     C  IHG  +  L L
Sbjct: 556 FVATCLIDVYGKCGRLVDAMSL----FYQVPQESSVTWNAIISCHGIHGHAEKTLKL 608


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 180/638 (28%), Positives = 292/638 (45%), Gaps = 141/638 (22%)

Query: 46  RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----K 101
           + L   ++ G   DAL LFD MPR+N  +W +++ G+ + G  E +L +F  M +     
Sbjct: 53  KRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAP 112

Query: 102 NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGS----------------- 144
           NDF+ N  +   A ADL AL  G+Q+HS  +  G   D+ +GS                 
Sbjct: 113 NDFACNAAL--VACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKE 170

Query: 145 --------------SLVNLYGKCGDFN-SANQVLNMMKE---PDDFCLS----------- 175
                         SL++ + + G+F  +A  ++ M+K+   P++  ++           
Sbjct: 171 VFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLG 230

Query: 176 ----------------------ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
                                 ALI  Y+  G+   A+ VFD     + V W SM+  YI
Sbjct: 231 QQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYI 290

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
            +    EAL +F  M   GV  +   L+ VL AC S+G    G+Q+H  A K  +I D+ 
Sbjct: 291 RDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIR 347

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
           V++ALL                               ++Y   G +E+ + +   + N  
Sbjct: 348 VSNALL-------------------------------SMYGRTGLVEELEAMLNKIENPD 376

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
           L+SW + I    QNG   +A+ L C M+      + ++ +SV+S+CA+++SL+ G Q   
Sbjct: 377 LVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHC 436

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCGY---------------------------------D 420
               +G DS+     +L++ Y KCG                                   
Sbjct: 437 LALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANK 496

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           AL +F++MR+ G+KP   TF  +L  C+H G+V+EG+ +F  M  QY   P   HY+CM+
Sbjct: 497 ALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMI 556

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540
           D+  R G  +EA+ +I  MPFE D  +W ++L  C  H +  +G+  A+R++EL   ++ 
Sbjct: 557 DMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSA 616

Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           +Y+ +S+I+A  GEWE +  +R  M E  V K  GCSW
Sbjct: 617 SYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSW 654



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 195/439 (44%), Gaps = 90/439 (20%)

Query: 23  VGKQLHLHFLKK-GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           +G+Q+H + +KK G+ + ++  +  L+  Y R G    A  +FD +  +N  SW +M++ 
Sbjct: 229 LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQL 288

Query: 82  FMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           +++ G  E++LQ+F  M  +    N+F+ ++++       L     G+Q+H   + + L 
Sbjct: 289 YIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL-----GRQLHCSAIKHDLI 343

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            D  + ++L+++YG+ G       +LN ++ PD      L+S                  
Sbjct: 344 TDIRVSNALLSMYGRTGLVEELEAMLNKIENPD------LVS------------------ 379

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                  W + IS    N    +A+ L  +M   G   +    +SVLS+C+ +  L+ G 
Sbjct: 380 -------WTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGM 432

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           Q H  A K+G   ++   +AL++ YSK                               CG
Sbjct: 433 QFHCLALKLGCDSEICTGNALINMYSK-------------------------------CG 461

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
           ++  A+  F  M    + SWNS+I G +Q+G   +AL++F  M    ++ D  +   V+ 
Sbjct: 462 QMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLM 521

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTS-------LVDFYCKCGY--DALALFNEM 428
            C +   +E GE +F R+ I     DQ   T        ++D   + G   +AL + N+M
Sbjct: 522 GCNHSGMVEEGE-LFFRLMI-----DQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDM 575

Query: 429 RNTGVKPTIITFTAILSAC 447
                +P  + +  +L++C
Sbjct: 576 P---FEPDALIWKTLLASC 591



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 14/240 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L SC    S+  G Q H   LK G  +S +   N L+ MY +CG    A L FD M
Sbjct: 415 FSSVLSSCADVASLDQGMQFHCLALKLGC-DSEICTGNALINMYSKCGQMGSARLAFDVM 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
              +  SWN++I G  + G   K+L++F+ M     + +D ++  ++ G   + +  +E 
Sbjct: 474 HTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGM--VEE 531

Query: 124 GKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
           G ++   ++++   F       + ++++ G+ G F+ A +++N M  EPD      L++ 
Sbjct: 532 G-ELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLAS 590

Query: 181 YANCGKMNDARRVFDR---TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                 ++  +   DR    +D  S  +  M + Y  + E  +A  +  +M   GV +DA
Sbjct: 591 CKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDA 650


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 174/606 (28%), Positives = 287/606 (47%), Gaps = 100/606 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C T      G  +H   LK G LNS + + N L+ MY + G+   ++ +F+ M
Sbjct: 223 LVSILPACGTERDEGFGLCVHGLVLKFG-LNSVVNLGNALVDMYGKFGDLESSMHVFNGM 281

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
             +N  SWN+ I  F   G  E  L++F +M + +    ++ +S    A  DL     GK
Sbjct: 282 QEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGK 341

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           ++H + +   +                               E D F  + L+  YA  G
Sbjct: 342 ELHGYSIRRAV-------------------------------ESDIFIANTLMDMYAKFG 370

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
               A  +F+     + V WN+MI+    N  + EA  L  +M++NG   ++ TL ++L 
Sbjct: 371 CSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLP 430

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           ACS +  ++ GKQ+H  + +  ++ D+ V++AL+D                         
Sbjct: 431 ACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALID------------------------- 465

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                 VY+ CG++  A++IF     K  +S+N++IVG SQ+    E+L LF  M    +
Sbjct: 466 ------VYAKCGQLNLARYIF-DRSEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGI 518

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK--------- 416
             D  S    +SAC+N+S+ + G+++   +    LDS   ++ SL+D Y K         
Sbjct: 519 EHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASK 578

Query: 417 -----------------CGYD-------ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                             GY        A  LF+ M++ G++   +++ A+LS C H GL
Sbjct: 579 IFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGL 638

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V  G+K+F  M  Q +I P+  HY+CMVDL  RAG L+E+  +I  MPF A+  +W ++L
Sbjct: 639 VDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALL 697

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  HGD  L R  AE + EL PEN+  Y  L ++++ SG W +++ ++ +M+ + V K
Sbjct: 698 GSCRIHGDIELARLAAEHLFELKPENSGYYTLLRNMYSESGMWNEANGVKKLMKSRKVQK 757

Query: 573 LPGCSW 578
            P  SW
Sbjct: 758 NPAYSW 763



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/559 (25%), Positives = 250/559 (44%), Gaps = 102/559 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G +LH   L++G+L + +   N L+  Y  CG   DA  +FDEMP R+  SWN+++   +
Sbjct: 137 GAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALL 196

Query: 84  KLGHKEKSLQ-LFNVMPQKNDFSWNMLISGFAKADLAALE-YGKQIHSHILVNGLDFDSV 141
             G  E + + +  +M      +   L+S          E +G  +H  +L  GL+    
Sbjct: 197 TNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVN 256

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           LG++LV++YGK GD  S+  V N M+E ++                              
Sbjct: 257 LGNALVDMYGKFGDLESSMHVFNGMQEKNE------------------------------ 286

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            V WNS I  +       + L +F  M  + V   + TL+S+L A   LG+   GK++HG
Sbjct: 287 -VSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHG 345

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
           ++ +  V  D+ +A+ L+D Y+K G    A  +F  ++V                     
Sbjct: 346 YSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEV--------------------- 384

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
                     ++++SWN+MI  L+QNG+  EA  L   M K     + F+L +++ AC+ 
Sbjct: 385 ----------RNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSR 434

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------- 418
           ++S+++G+Q+ A      L SD  +S +L+D Y KCG                       
Sbjct: 435 VASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSEKDGVSYNTLI 494

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                    +++L LF +MR  G++   ++F   LSAC +    K+G++    +  +  +
Sbjct: 495 VGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRL-L 553

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
           D      + ++D++ + G L+ A  +  ++  + DV  W++++ G   HG       VA 
Sbjct: 554 DSHPFLANSLLDVYTKGGMLDTASKIFNRIT-QKDVASWNTMILGYGMHGQI----DVAF 608

Query: 530 RMIELDPENACAYIQLSSI 548
            + +L  ++   Y  +S I
Sbjct: 609 ELFDLMKDDGIEYDHVSYI 627



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 119/515 (23%), Positives = 202/515 (39%), Gaps = 104/515 (20%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGF 82
           ++ H   L  G L ++ P+A  LL  Y    +   A L+    P   R+ F WN++    
Sbjct: 31  RRAHAASLVSGALTASFPLAGALLLSYAALPDIPSAHLILRHHPFRLRSAFLWNSLSRAL 90

Query: 83  MKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
                  ++L+++N M      P    F + +  +          + G ++H+  L  GL
Sbjct: 91  ASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAK-GAELHAAALRRGL 149

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
                                            D F  + L++ YA CG+  DARRVFD 
Sbjct: 150 LL------------------------------ADVFAGNTLVTFYAVCGRAADARRVFDE 179

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
                 V WNS++S  ++N    +A      M R+GV  + ++L S+L AC +      G
Sbjct: 180 MPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFG 239

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
             VHG   K G+   V + +AL+D Y K                                
Sbjct: 240 LCVHGLVLKFGLNSVVNLGNALVDMYGK-------------------------------F 268

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
           G +E + H+F  M  K+ +SWNS I   +  G   + L++F  M++ D+     +L+S++
Sbjct: 269 GDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLL 328

Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK--CGYDALALFN-------- 426
            A  ++    LG+++        ++SD  I+ +L+D Y K  C   A A+F         
Sbjct: 329 PALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVV 388

Query: 427 -----------------------EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
                                  EM+  G  P   T   +L AC     VK G K   A 
Sbjct: 389 SWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMG-KQIHAW 447

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
             +  +  ++   + ++D++A+ G LN A  + ++
Sbjct: 448 SIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR 482


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 172/588 (29%), Positives = 271/588 (46%), Gaps = 102/588 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H   +  G  +S L + + +++MY +     DA  +FD MP ++   WN MI G+ 
Sbjct: 138 GRVIHGQAVVDGC-DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYR 196

Query: 84  KLGHKEKSLQLFNVMPQKN--DFSWNMLISGF-AKADLAALEYGKQIHSHILVNGLDFDS 140
           K     +S+Q+F  +  ++        L+    A A+L  L  G QIHS           
Sbjct: 197 KNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS----------- 245

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
                   L  K G ++             D+ L+  IS Y+ CGK+     +F      
Sbjct: 246 --------LATKTGCYS------------HDYVLTGFISLYSKCGKIKMGSALFREFRKP 285

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             V +N+MI GY SN E   +L LF ++  +G    +STL S++     L  +     +H
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI---YAIH 342

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G+  K   +    V++AL                                TVYS    IE
Sbjct: 343 GYCLKSNFLSHASVSTAL-------------------------------TTVYSKLNEIE 371

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            A+ +F   P KSL SWN+MI G +QNG   +A+ LF  M K +   +  ++  ++SACA
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACA 431

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
            + +L LG+ V   V     +S   +ST+L+  Y KCG                      
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491

Query: 419 -----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                       +AL +F EM N+G+ PT +TF  +L AC H GLVKEG + F++M  +Y
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
             +P ++HY+CMVD+  RAG L  A+  IE M  E    +W ++L  C  H D  L R V
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTV 611

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
           +E++ ELDP+N   ++ LS+I +    + +++ +R   +++ + K PG
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 133/527 (25%), Positives = 220/527 (41%), Gaps = 54/527 (10%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           +T +D+  R   S +  H      Q+ LH  +  I      +  +L Q     G    A 
Sbjct: 21  NTYLDFFKR---STSISHLAQTHAQIILHGFRNDI-----SLLTKLTQRLSDLGAIYYAR 72

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL 121
            +F  + R + F +N ++ GF        SL +F  + +  D   N     FA +  +  
Sbjct: 73  DIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGF 132

Query: 122 E---YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
                G+ IH   +V+G D + +LGS++V +Y K      A +V + M E D        
Sbjct: 133 RDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKD-------- 184

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DA 237
                                  +++WN+MISGY  N    E++ +F  +        D 
Sbjct: 185 -----------------------TILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDT 221

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           +TL  +L A + L  L  G Q+H  A K G      V +  +  YSK G       LF E
Sbjct: 222 TTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFRE 281

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA-LDL 356
            +  D +  N MI  Y+S G  E +  +F+ +        +S +V L     P+   L L
Sbjct: 282 FRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSL----VPVSGHLML 337

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS-TSLVDFYC 415
              ++   L+ +  S ASV +A   + S +L E   AR          + S  +++  Y 
Sbjct: 338 IYAIHGYCLKSNFLSHASVSTALTTVYS-KLNEIESARKLFDESPEKSLPSWNAMISGYT 396

Query: 416 KCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
           + G   DA++LF EM+ +   P  +T T ILSAC   G +  G KW   +      +  I
Sbjct: 397 QNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSI 455

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
              + ++ ++A+ G + EA  L + M  + +V  W++++ G   HG 
Sbjct: 456 YVSTALIGMYAKCGSIAEARRLFDLMTKKNEV-TWNTMISGYGLHGQ 501


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 179/604 (29%), Positives = 288/604 (47%), Gaps = 99/604 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  G+++H+H ++ G     + + N L+ MY++CG+   A LLFD MPRR
Sbjct: 202 VLRTCGGIPDLARGREVHVHVVRYG-YELDIDVVNALITMYVKCGDVKSARLLFDRMPRR 260

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAKADLAA-LEYGKQIH 128
           +  SWNAMI G+ + G   + L+LF  M   + D     L S  +  +L      G+ IH
Sbjct: 261 DIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIH 320

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           ++++  G   D  + +SL  +Y   G +                                
Sbjct: 321 AYVITTGFAVDISVCNSLTQMYLYAGSWR------------------------------- 349

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           +A ++F R      V W +MISGY  N    +A+  +  M ++ V  D  T+A+VLSAC+
Sbjct: 350 EAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACA 409

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           +LG L+ G ++H  A K  +I  VIVA                               N 
Sbjct: 410 TLGDLDTGVELHKLAIKARLISYVIVA-------------------------------NN 438

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +I +YS C  I+ A  IF  +P K++ISW S+I GL  N    EAL  F  M K+ L+ +
Sbjct: 439 LINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQM-KMTLQPN 497

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA----- 423
             +L + ++ACA I +L  G+++ A V   G+  D  +  +L+D Y +CG   +A     
Sbjct: 498 AITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFN 557

Query: 424 ---------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                      LF+ M    V+P  ITF ++L  C    +V++G
Sbjct: 558 SQKKDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQG 617

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             +F  M+ +Y + P ++HY+C+VDL  RAG L EA   I++MP   D  +W ++L  C 
Sbjct: 618 LMYFSKME-EYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACR 676

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  LG   A+R+ ELD  +   YI L +++A  G+W + + +R +M+E  +    GC
Sbjct: 677 IHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGC 736

Query: 577 SWAD 580
           SW +
Sbjct: 737 SWVE 740



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 129/500 (25%), Positives = 213/500 (42%), Gaps = 83/500 (16%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEYGKQIHSHIL 132
           NA +  F++ G+   +  +F  M ++N FSWN+L+ G+AK    D A   Y    H  + 
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLY----HRMLW 188

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGYANCGKMN 188
           V G+  D      ++   G   D     +V    +    E D   ++ALI+ Y  CG + 
Sbjct: 189 VGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVK 248

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR +FDR      + WN+MISGY  N    E L LF  MR   V  D  TL SV+SAC 
Sbjct: 249 SARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACE 308

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            LG    G+ +H +    G   D+ V ++L   Y   G   +A KLFS +   D +   T
Sbjct: 309 LLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTT 368

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           MI+                               G   N  P +A+D +  M++  ++ D
Sbjct: 369 MIS-------------------------------GYEYNFLPEKAIDTYRMMDQDSVKPD 397

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY--CKCGYDALALFN 426
           + ++A+V+SACA +  L+ G ++        L S  I++ +L++ Y  CKC   AL +F+
Sbjct: 398 EITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFH 457

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID---------------- 470
            +     +  +I++T+I++         E   +F  MK     +                
Sbjct: 458 NIP----RKNVISWTSIIAGLRLNNRCFEALIFFRQMKMTLQPNAITLTAALAACARIGA 513

Query: 471 ----PEIEHY-------------SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
                EI  +             + ++D++ R G +N A N       + DV  W+ +L 
Sbjct: 514 LMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQ--KKDVSSWNILLT 571

Query: 514 GCVAHGDKGLGRKVAERMIE 533
           G    G   +  ++ +RM++
Sbjct: 572 GYSERGQGSVVVELFDRMVK 591


>gi|302143464|emb|CBI22025.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 144/452 (31%), Positives = 225/452 (49%), Gaps = 64/452 (14%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           +L  GKQ+HS I+ +G   D  + + L+NLY KCG  ++A  +  +M   +    + LI+
Sbjct: 67  SLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILIN 126

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           GY   G    AR++FD   + +   WN+M++G I    + E L LF +M   G L D   
Sbjct: 127 GYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFA 186

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           L SVL  C+ L  L  G+QVHG+  K G   +++V S+L   Y K               
Sbjct: 187 LGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMK--------------- 231

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG + + + + R MP++++++WN++I G +QNG P E LD +  
Sbjct: 232 ----------------CGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNM 275

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M     R DK +  SVIS+C+ +++L  G+Q+ A V   G      + +SL+  Y +CG 
Sbjct: 276 MKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGC 335

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +A+ LFN+M    ++   +TF ++L A
Sbjct: 336 LEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYA 395

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C HCGL ++G K+FD M  +Y + P +EHY+CMVDL  R G + EA  LI  MP +ADV 
Sbjct: 396 CSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVI 455

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
            W ++L  C  H    + R+++E +  LDP +
Sbjct: 456 TWKTLLSACKIHKKTEMARRISEEVFRLDPRD 487



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 204/476 (42%), Gaps = 102/476 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LLQSC + +S+ +GKQLH   +  G  +    I+N LL +Y +CG    A+ LF  M
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKF-ISNHLLNLYSKCGQLDTAITLFGVM 113

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK------------ 115
           PR+N  S N +I G+ + G    + ++F+ MP++N  +WN +++G  +            
Sbjct: 114 PRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFS 173

Query: 116 ---------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
                                A L AL  G+Q+H ++   G +F+ V+ SSL ++Y KCG
Sbjct: 174 RMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCG 233

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
                 +++  M   +                                V WN++I+G   
Sbjct: 234 SLGEGERLIRAMPSQN-------------------------------VVAWNTLIAGRAQ 262

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
           N    E L  ++ M+  G   D  T  SV+S+CS L  L  G+Q+H    K G    V V
Sbjct: 263 NGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSV 322

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 334
            S+L+  YS+ G    + K+F E +  D +  ++MI  Y   GR                
Sbjct: 323 ISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGR---------------- 366

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-A 393
                           +EA+DLF  M +  L  +  +  S++ AC++    E G + F  
Sbjct: 367 ---------------GVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDL 411

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSAC 447
            V   G+       T +VD   + G   +A AL   +R+  VK  +IT+  +LSAC
Sbjct: 412 MVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEAL---IRSMPVKADVITWKTLLSAC 464



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 165/374 (44%), Gaps = 42/374 (11%)

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           +  + S  + +L +C S   L  GKQ+H      G   D  +++ LL+ YSK G    A 
Sbjct: 48  IWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAI 107

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
            LF  +   + +  N +I  Y   G    A+ +F  MP +++ +WN+M+ GL Q     E
Sbjct: 108 TLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEE 167

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
            L LF  MN+L    D+F+L SV+  CA + +L  G QV   V   G + + ++ +SL  
Sbjct: 168 GLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAH 227

Query: 413 FYCKCG---------------------------------YDALALFNEMRNTGVKPTIIT 439
            Y KCG                                  + L  +N M+  G +P  IT
Sbjct: 228 MYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKIT 287

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           F +++S+C     + +GQ+   A   +      +   S ++ +++R GCL  ++ +  + 
Sbjct: 288 FVSVISSCSELATLGQGQQ-IHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLEC 346

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE----NACAYIQLSSIFATSGEW 555
               DV  WSS++    A+G  G G +  +   +++ E    N   ++ L    +  G  
Sbjct: 347 E-NGDVVCWSSMI---AAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLK 402

Query: 556 EKSSLIRDIMREKH 569
           EK     D+M EK+
Sbjct: 403 EKGIKFFDLMVEKY 416


>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
          Length = 841

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/549 (29%), Positives = 272/549 (49%), Gaps = 51/549 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y + G   DA+ L  EMP  +  SWN+++ G ++     +S+Q F+ MP K+  
Sbjct: 140 NTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLV 199

Query: 105 SWNMLISGFAKA-DL-AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 162
           SWN+++ G+ +A DL  A  +  +I S  +++ ++        LVN Y + G    A ++
Sbjct: 200 SWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVN--------LVNGYCQAGRMGEAREL 251

Query: 163 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 222
            + M E +    + L+SGY    ++  A  +F    + +S+ W +M+SG++ + +  EA 
Sbjct: 252 FDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAK 311

Query: 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
            +  KM  + V    + +   L +      ++  +Q+        V+ D +  + ++  Y
Sbjct: 312 DVLSKMPSDNVGAKTALMHGYLKS----NLIDDARQLFDGI----VVRDAVCWNTMISGY 363

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
            + GM  +A  LF ++   D I  NTMI   +  G+I  A  IFR M  ++ +SWNS+I 
Sbjct: 364 VQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIIS 423

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G  QNG  +EAL  F  M +     D  + A  +SA AN+++L++G Q  + +   G  S
Sbjct: 424 GFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFIS 483

Query: 403 DQIISTSLVDFYCKCGY---------------------------------DALALFNEMR 429
           D     +L+  Y KCG                                  + +A+F EM 
Sbjct: 484 DSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREME 543

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
              V+P  IT   +LSAC H GL+ EG  +F++M   Y + P  EHY+CMVDL  RAG L
Sbjct: 544 ANSVRPDEITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRL 603

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549
            EA  L++ M  + + G+W ++L  C  H +  +    AE++ EL+P  A  Y+ LS+I 
Sbjct: 604 REAFELVQGMQIQPNAGVWGALLGACRVHKNHEIAWLAAEKLFELEPCKASNYVLLSNIC 663

Query: 550 ATSGEWEKS 558
             +G+W+ +
Sbjct: 664 VEAGKWDDA 672



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 212/469 (45%), Gaps = 36/469 (7%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N+ L    R G    A  LF+EMPRRN  S+NAM+      G   ++ +LF+ MP++N 
Sbjct: 14  SNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNP 73

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSS-LVNLYGKCGDFNSANQV 162
            SWN ++       +A  ++G+   +  L + +   +    + +V+ Y + G+   A ++
Sbjct: 74  VSWNTMM-------VACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLAREL 126

Query: 163 LNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221
           L+ M  E    C + +ISGYA  G+  DA  +         V WNS++ G I N E + +
Sbjct: 127 LDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRS 186

Query: 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281
           +  F +M      +D  +   +L      G L+             VI  V     L++ 
Sbjct: 187 VQFFDEMPD----KDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWV----NLVNG 238

Query: 282 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
           Y + G   +A +LF  +   + +  N +++ Y    ++E A ++F  MP K+ ISW +M+
Sbjct: 239 YCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMV 298

Query: 342 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 401
            G  ++G   EA D+   M   ++     +  +++      + ++   Q+F  + +    
Sbjct: 299 SGFVRSGKLQEAKDVLSKMPSDNVG----AKTALMHGYLKSNLIDDARQLFDGIVV---- 350

Query: 402 SDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
            D +   +++  Y +CG   +A+ LF +M N      +I++  +++ C   G +++    
Sbjct: 351 RDAVCWNTMISGYVQCGMLDEAMVLFQQMPNK----DMISWNTMIAGCAQGGQIRKAASI 406

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           F  MK +  +      ++ ++  F + G   EA+     M  +A    W
Sbjct: 407 FRKMKRRNTVS-----WNSIISGFVQNGLFVEALQHFMLMRRDAKSADW 450



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/457 (21%), Positives = 200/457 (43%), Gaps = 49/457 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
           F  N  +    + G    + +LF  MP++N  S+N ++S  A        +G+   +  L
Sbjct: 12  FRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALA-------HHGRLAEARRL 64

Query: 133 VNGLD-FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
            + +   + V  ++++    + G    A  + + M   +++  + ++S Y   G++  AR
Sbjct: 65  FDEMPRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLAR 124

Query: 192 RVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
            + DR   +  +  +N+MISGY  N    +A+ L  +M              ++S  S L
Sbjct: 125 ELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEM----------PAPDIVSWNSVL 174

Query: 251 GFLEHGKQVHGHACKVGVID-----DVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           G L   +++   +  V   D     D++  + +L+ Y + G    A   FS +   + I 
Sbjct: 175 GGLIRNEEI---SRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVIS 231

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
              ++  Y   GR+ +A+ +F  MP +++++WN ++ G  Q      A +LF  M +   
Sbjct: 232 WVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPE--- 288

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCGY--DAL 422
             +  S  +++S       L+  + V ++     + SD +   T+L+  Y K     DA 
Sbjct: 289 -KNSISWTTMVSGFVRSGKLQEAKDVLSK-----MPSDNVGAKTALMHGYLKSNLIDDAR 342

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LF+ +    V    + +  ++S    CG++ E    F  M      + ++  ++ M+  
Sbjct: 343 QLFDGI----VVRDAVCWNTMISGYVQCGMLDEAMVLFQQMP-----NKDMISWNTMIAG 393

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
            A+ G + +A ++  +M     V  W+SI+ G V +G
Sbjct: 394 CAQGGQIRKAASIFRKMKRRNTVS-WNSIISGFVQNG 429



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 145/323 (44%), Gaps = 47/323 (14%)

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           L + ++ G  + A +LF E+   + +  N M++  +  GR+ +A+ +F  MP ++ +SWN
Sbjct: 18  LTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPVSWN 77

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           +M+V  SQ+G   +A  LF  M       +++S   ++S       L L  ++  R+   
Sbjct: 78  TMMVACSQHGRVEDARGLFDAMPA----RNEYSWTIMVSCYVRAGELTLARELLDRMP-- 131

Query: 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
           G       +T ++  Y K G   DA+AL  EM      P I+++ ++L        +   
Sbjct: 132 GEKCAACYNT-MISGYAKNGRFEDAIALLQEM----PAPDIVSWNSVLGGLIRNEEISRS 186

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            ++FD M      D ++  ++ M++ + RAG L+ A     ++P   +V  W +++ G  
Sbjct: 187 VQFFDEMP-----DKDLVSWNLMLEGYVRAGDLDVASAFFSRIP-SPNVISWVNLVNGYC 240

Query: 517 AHGDKGLGRKVAERM----------------------------IELDPENACAYIQLSSI 548
             G  G  R++ +RM                            IE+  +N+ ++  + S 
Sbjct: 241 QAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSG 300

Query: 549 FATSGEWEKSSLIRDIMREKHVG 571
           F  SG+ +++  +   M   +VG
Sbjct: 301 FVRSGKLQEAKDVLSKMPSDNVG 323


>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
          Length = 1008

 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 179/609 (29%), Positives = 290/609 (47%), Gaps = 102/609 (16%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            +  +L +C+   +I +GK  H    +K   +S L I+N LL  Y  CG  + +  LF +M
Sbjct: 461  IVNILSACSKLEAILLGKAAHAFSFRKE-FDSNLNISNALLAFYSDCGKLSSSFKLFQKM 519

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAA-LEYGK 125
            P RN  SWN +I G +  G  +K++ L + M Q K +     LIS      +A  L  G 
Sbjct: 520  PLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGM 579

Query: 126  QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
             +H + +  G   D     SLVN                           ALIS Y NCG
Sbjct: 580  TLHGYAIKTGFACDV----SLVN---------------------------ALISMYFNCG 608

Query: 186  KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
             +N  + +F+     S V WN++I+GY  +    E +  F +M R G   +  TL ++L 
Sbjct: 609  DINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLP 668

Query: 246  ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            +C +L     GK +H  A + GVI +  + ++L+  Y++                ++ I 
Sbjct: 669  SCRTL---LQGKSIHAFAVRTGVIVETPIITSLISMYAR----------------FENI- 708

Query: 306  LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
             N+ I ++   G+ ED            +  WN+++    Q  +  E++  FC +    +
Sbjct: 709  -NSFIFLFEMGGK-ED------------IALWNAIMSVYVQTKNAKESVTFFCELLHARV 754

Query: 366  RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
              D  +  S+ISAC  +SSL L   V A V   G D   +IS +L+D + +CG       
Sbjct: 755  EPDYITFLSLISACVQLSSLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKK 814

Query: 419  --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                        ALAL ++MR +G+KP  IT+ ++LSAC H G 
Sbjct: 815  IFEGLSSKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGF 874

Query: 453  VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
            + +G   F++M  +  +   +EHY+CMVDL  R G LNEA + +E++P +  V +  S+L
Sbjct: 875  IDQGWMIFNSMV-EEGVPRRMEHYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSLLESLL 933

Query: 513  RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
              C+ HG+  LG K++  + ELDP+N+ +Y+ L +I+A +G W  ++ +R  M E+ + K
Sbjct: 934  GACIIHGNVKLGEKISSLLFELDPKNSGSYVMLYNIYAAAGRWMDANRVRSDMEERQLRK 993

Query: 573  LPGCSWADG 581
            +PG S  +G
Sbjct: 994  IPGFSLVEG 1002



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 154/614 (25%), Positives = 261/614 (42%), Gaps = 116/614 (18%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M   +     ++  C    +   GK LH H +K   L+S L +A  LL MY + G+   A
Sbjct: 353 MQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYR-LDSQLSVATALLSMYAKLGDLNSA 411

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA 120
             +F +MPRRN  SWN+MI G+   G  E S+  F  M                      
Sbjct: 412 DFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQ--------------------- 450

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS-----ANQVLNMMKEPD-DFCL 174
                         G D D++   S+VN+   C    +     A    +  KE D +  +
Sbjct: 451 ------------FEGFDPDAI---SIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNI 495

Query: 175 S-ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           S AL++ Y++CGK++ + ++F +    +++ WN++ISG + N +  +A+ L HKM++  +
Sbjct: 496 SNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKM 555

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
             D  TL S++  C     L  G  +HG+A K G                       AC 
Sbjct: 556 ELDLVTLISIIPICRVAENLIQGMTLHGYAIKTGF----------------------AC- 592

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
                   D  L+N +I++Y +CG I   K +F  MP +S++SWN++I G   +    E 
Sbjct: 593 --------DVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEV 644

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           +  FC M +   + +  +L +++ +C    +L  G+ + A     G+  +  I TSL+  
Sbjct: 645 MASFCQMIREGQKPNYVTLLNLLPSC---RTLLQGKSIHAFAVRTGVIVETPIITSLISM 701

Query: 414 YCKC-------------GYDALALFN--------------------EMRNTGVKPTIITF 440
           Y +              G + +AL+N                    E+ +  V+P  ITF
Sbjct: 702 YARFENINSFIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITF 761

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
            +++SAC     +        A   Q   D  I   + ++DLFAR G ++ A  + E + 
Sbjct: 762 LSLISACVQLSSLNLSNSVM-AYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLS 820

Query: 501 FEADVGMWSSILRGCVAHGDK--GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
              D   WS+++ G   HGD    L      R+  + P+    Y  + S  +  G  ++ 
Sbjct: 821 -SKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPD-GITYASVLSACSHGGFIDQG 878

Query: 559 SLIRDIMREKHVGK 572
            +I + M E+ V +
Sbjct: 879 WMIFNSMVEEGVPR 892



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 136/539 (25%), Positives = 229/539 (42%), Gaps = 97/539 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C    ++ + + +H   L+       L I   L+  Y + G    A L+ D++ + 
Sbjct: 161 VIKACTALGAVWIAEGVHCIVLRTS-FEENLVIQTALVDFYAKTGRMVKARLVLDKISQP 219

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK-----ADLAALEYGK 125
           +  +WNA+I G+   G  +   ++F V+ Q N+      +S FA        +  L+ GK
Sbjct: 220 DLVTWNALISGYSLNGFDK---EVFEVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGK 276

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH  ++ +G                                  D+F   ALIS YA  G
Sbjct: 277 SIHGFVVKSGFS-------------------------------SDEFLTPALISMYAGGG 305

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            +  AR +FD   + + V+WNSMIS Y  N + +EA  +F +M +  +  +  T  S++ 
Sbjct: 306 NLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIP 365

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            C +     +GK +H H  K  +   + VA+ALL  Y+K                     
Sbjct: 366 CCENSANFWYGKSLHAHVMKYRLDSQLSVATALLSMYAK--------------------- 404

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                      G +  A  IF  MP ++L+SWNSMI G   NG    ++D FC+M     
Sbjct: 405 ----------LGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGF 454

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALA 423
             D  S+ +++SAC+ + ++ LG+   A       DS+  IS +L+ FY  CG    +  
Sbjct: 455 DPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFK 514

Query: 424 LFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
           LF +M  RN       I++  ++S C H G  K+       M+ +     E++    +V 
Sbjct: 515 LFQKMPLRNA------ISWNTLISGCVHNGDTKKAVALLHKMQQE---KMELD----LVT 561

Query: 482 LFARAGCLNEAVNLIEQMP---------FEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           L +       A NLI+ M          F  DV + ++++      GD   G+ + E M
Sbjct: 562 LISIIPICRVAENLIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVM 620



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 129/544 (23%), Positives = 223/544 (40%), Gaps = 82/544 (15%)

Query: 38  NSTLPIANRLLQMYMRCGN-----PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL 92
           NS+ P     L+++  C N     P  ++L+  ++ R        +I  F  LG  E +L
Sbjct: 51  NSSNPKVTSFLRLFDLCRNIENLKPLGSVLIVRDLMRDEYVVAEFIISCF-HLGAPELAL 109

Query: 93  QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 152
             F  + + + F  N++I      D    E    ++    V G   D      ++     
Sbjct: 110 SAFEAIEKPSVFLQNLMIRRLC--DHGLFEDVLCVYLKCRVLGCPSDDFTFPFVIKACTA 167

Query: 153 CGDFNSANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
            G    A  V    L    E +    +AL+  YA  G+M  AR V D+ +    V WN++
Sbjct: 168 LGAVWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNAL 227

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           ISGY  N  D E   +  ++   G+  + ST AS++  C+ +  L+ GK +HG   K G 
Sbjct: 228 ISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKSGF 287

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
             D  +  AL                               I++Y+  G +  A+ +F +
Sbjct: 288 SSDEFLTPAL-------------------------------ISMYAGGGNLFIARDLFDS 316

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
              K+++ WNSMI   +QN    EA  +F  M K +++ +  +  S+I  C N ++   G
Sbjct: 317 AAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYG 376

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------------ 418
           + + A V    LDS   ++T+L+  Y K G                              
Sbjct: 377 KSLHAHVMKYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHN 436

Query: 419 --YDA-LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
             ++A +  F +M+  G  P  I+   ILSAC     +  G K   A  ++   D  +  
Sbjct: 437 GLWEASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLG-KAAHAFSFRKEFDSNLNI 495

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK----GLGRKVAERM 531
            + ++  ++  G L+ +  L ++MP    +  W++++ GCV +GD      L  K+ +  
Sbjct: 496 SNALLAFYSDCGKLSSSFKLFQKMPLRNAIS-WNTLISGCVHNGDTKKAVALLHKMQQEK 554

Query: 532 IELD 535
           +ELD
Sbjct: 555 MELD 558


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 182/607 (29%), Positives = 288/607 (47%), Gaps = 113/607 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C T   +  G ++H   LK G +     +A  L+ +Y R     +A +LFDEMP R
Sbjct: 159 VLKACRT---VIDGNKIHCLALKFGFMWDVY-VAASLIHLYSRYKAVGNARILFDEMPVR 214

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +             +G                  SWN +ISG+ ++       G    + 
Sbjct: 215 D-------------MG------------------SWNAMISGYCQS-------GNAKEAL 236

Query: 131 ILVNGLD-FDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGYANCG 185
            L NGL   DSV   SL++   + GDFN    +    +    E + F  + LI  YA  G
Sbjct: 237 TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG 296

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++ D ++VFDR      + WNS+I  Y  N +   A+ LF +MR + +  D  TL S+ S
Sbjct: 297 RLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLAS 356

Query: 246 ACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
             S LG +   + V G   + G  ++D+ +                              
Sbjct: 357 ILSQLGDIRACRSVQGFTLRKGWFLEDITIG----------------------------- 387

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL- 363
             N ++ +Y+  G ++ A+ +F  +PN  +ISWN++I G +QNG   EA++++  M +  
Sbjct: 388 --NAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEG 445

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DA 421
           ++  ++ +  SV+ AC+   +L  G ++  R+   GL  D  + TSL D Y KCG   DA
Sbjct: 446 EIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDA 505

Query: 422 LALF-------------------------------NEMRNTGVKPTIITFTAILSACDHC 450
           L+LF                                EM + GVKP  ITF  +LSAC H 
Sbjct: 506 LSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHS 565

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV EGQ  F+ M+  Y I P ++HY CMVD++ RAG L  A+  I+ M  + D  +W +
Sbjct: 566 GLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGA 625

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  HG+  LG+  +E + E++PE+   ++ LS+++A++G+WE    IR I   K +
Sbjct: 626 LLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGL 685

Query: 571 GKLPGCS 577
            K PG S
Sbjct: 686 RKTPGWS 692



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 131/559 (23%), Positives = 234/559 (41%), Gaps = 115/559 (20%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFL-KKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ID +  L + C    S    K LH   +  K I N  + I+ +L+ +Y   GN   A   
Sbjct: 54  IDDVHTLFRYCTNLQS---AKCLHARLVVSKQIQN--VCISAKLVNLYCYLGNVALARHT 108

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-LISGFAKADLAALE 122
           FD +  R+ ++WN MI G+ + G+  + ++ F++    +  + +        KA    ++
Sbjct: 109 FDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID 168

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G +IH   L  G  +D  + +SL++LY +     +A  + + M   D    +A+ISGY 
Sbjct: 169 -GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYC 227

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             G                                  EAL L + +R      D+ T+ S
Sbjct: 228 QSGNAK-------------------------------EALTLSNGLR----AMDSVTVVS 252

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +LSAC+  G    G  +H ++ K G+  ++ V++ L+D Y++ G   D  K+F  + V D
Sbjct: 253 LLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRD 312

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                                          LISWNS+I     N  P+ A+ LF  M  
Sbjct: 313 -------------------------------LISWNSIIKAYELNEQPLRAISLFQEMRL 341

Query: 363 LDLRMD---KFSLASVIS------ACANISSLEL-----------GEQVFARVTIIGL-- 400
             ++ D     SLAS++S      AC ++    L           G  V      +GL  
Sbjct: 342 SRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVD 401

Query: 401 ----------DSDQIISTSLVDFYCKCGY--DALALFNEMRNTG-VKPTIITFTAILSAC 447
                     ++D I   +++  Y + G+  +A+ ++N M   G +     T+ ++L AC
Sbjct: 402 SARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPAC 461

Query: 448 DHCGLVKEGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
              G +++G K     +K   ++D  +   + + D++ + G L +A++L  Q+P    V 
Sbjct: 462 SQAGALRQGMKLHGRLLKNGLYLDVFV--VTSLADMYGKCGRLEDALSLFYQIPRVNSVP 519

Query: 507 MWSSIL--RGCVAHGDKGL 523
            W++++   G   HG+K +
Sbjct: 520 -WNTLIACHGFHGHGEKAV 537



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 187/459 (40%), Gaps = 111/459 (24%)

Query: 148 NLYGKCGDFNSA---NQVLNMMKEPDDFCLSA-LISGYANCGKMNDARRVFDRTTDTSSV 203
            L+  C +  SA   +  L + K+  + C+SA L++ Y   G +  AR  FD   +    
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVY 118

Query: 204 MWNSMISGYISNNEDTEALLLFHK-MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
            WN MISGY      +E +  F   M  +G+  D  T  SVL AC ++     G ++H  
Sbjct: 119 AWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV---IDGNKIHCL 175

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           A K G + DV VA++L+  YS+     +A  LF E+ V D                    
Sbjct: 176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRD-------------------- 215

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
                      + SWN+MI G  Q+G+  EAL L   +      MD  ++ S++SAC   
Sbjct: 216 -----------MGSWNAMISGYCQSGNAKEALTLSNGLRA----MDSVTVVSLLSACTEA 260

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD-------------- 420
                G  + +     GL+S+  +S  L+D Y + G        +D              
Sbjct: 261 GDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSII 320

Query: 421 -----------ALALFNEMRNTGVKP---TIITFTAILS------ACDHCGLVKEGQKWF 460
                      A++LF EMR + ++P   T+I+  +ILS      AC         + WF
Sbjct: 321 KAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWF 380

Query: 461 --------------------DAMKWQYHIDP--EIEHYSCMVDLFARAGCLNEAVNLIEQ 498
                               D+ +  ++  P  ++  ++ ++  +A+ G  +EA+ +   
Sbjct: 381 LEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNI 440

Query: 499 MPFEADV----GMWSSILRGCVAHGDKGLGRKVAERMIE 533
           M  E ++    G W S+L  C   G    G K+  R+++
Sbjct: 441 MEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK 479


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 175/610 (28%), Positives = 286/610 (46%), Gaps = 106/610 (17%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           + +  L+  C+   ++  G  LH   +K     S + ++N +L +Y +C    +A  +FD
Sbjct: 4   ELVGSLIHQCSKTKALRQGLPLHAIAIKTAT-RSDVIVSNHILNLYAKCRKLREARQVFD 62

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLF---NVMPQKNDFSWNMLISGFAKADLAALE 122
           EM  RN  SW+AMI G+ ++G    +L LF   N++P  N++ +  +IS  A A L  L 
Sbjct: 63  EMSERNLVSWSAMISGYEQIGEPISALGLFSKLNIVP--NEYVYASVIS--ACASLKGLV 118

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            GKQIH   L  GLD  S                               F  +ALI+ Y 
Sbjct: 119 QGKQIHGQALKFGLDSVS-------------------------------FVSNALITMYM 147

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
            CGK +DA   ++   + + V +N++I+G++ N +  +   +   M ++G   D  T   
Sbjct: 148 KCGKCSDALLAYNEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVG 207

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L  C+S   L+ G+ +H    K                                LK+  
Sbjct: 208 LLGTCNSRDDLKRGELLHCQTIK--------------------------------LKLNS 235

Query: 303 TILL-NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM- 360
           T  + N +IT+YS    +E+A+  FR++  K LISWN+ I   S      +AL+ F  M 
Sbjct: 236 TAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEML 295

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
           N+  +R D+F+ AS ++AC+ ++S+  G+Q+   +    L  D     +L++ Y KCG  
Sbjct: 296 NECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCI 355

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                            A  LF +M+  GVKP  +TF  +L+A 
Sbjct: 356 AKAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTAS 415

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
           +H GLV EG  +F++M+  Y I PEIEH+SC++DL  RAG LNEA   +++ PF  D  +
Sbjct: 416 NHAGLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVV 475

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
             S+L  C  HGD   G+  A ++++L P     Y+ LS+++A+   W+  +    +++ 
Sbjct: 476 LGSLLSACRLHGDVDTGKCFARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLKG 535

Query: 568 KHVGKLPGCS 577
             + K PG S
Sbjct: 536 SGLKKEPGHS 545


>gi|347954452|gb|AEP33726.1| chlororespiratory reduction 21, partial [Aethionema cordifolium]
          Length = 618

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 176/604 (29%), Positives = 286/604 (47%), Gaps = 106/604 (17%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           MY +CG   DA  +FD MP RN  +WN+++ G+++ G  E++++L + M  +      + 
Sbjct: 2   MYGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTRVT 61

Query: 110 ISG--FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
           +S    A A +  +E GKQ H+  +VNGL+ D++LG+S++N Y K G    A  + + M 
Sbjct: 62  VSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMIFDKMI 121

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           E D    + LISGY   G + D                               A+     
Sbjct: 122 EKDVVTWNLLISGYVQQGLIED-------------------------------AIYKCKL 150

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           MR   +  D  T+++++SA +    L  GKQ+  +  +  +  D++ AS  +D Y+K G 
Sbjct: 151 MRLENLKFDCVTISTLMSAAAHTQDLNLGKQLQCYCLRNSLESDIVSASTTVDMYAKCGR 210

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSC------------------------------- 316
             DA K+F      D +L NT++  Y+                                 
Sbjct: 211 ILDAKKVFDSTVHKDLMLWNTLLAAYAESSHSGEALRLFYEMQLESVTPNVISWNLIILS 270

Query: 317 ----GRIEDAKHIF----RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
               G++ +AK +F     T  + +LISW +++ GL QNG   EA+  F  M +  LR +
Sbjct: 271 LLRXGQVTEAKXMFLQIQSTGISPNLISWTTLMNGLVQNGYSEEAIMYFKKMQESGLRPN 330

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG--------- 418
            FS    +SAC+N++SL  G  +   +      S  + + TSL+D Y KCG         
Sbjct: 331 PFSXTVALSACSNLASLHFGRSIHGYIIRNQWHSGSVSLETSLLDMYAKCGDINKAERVF 390

Query: 419 ----YDALALFNEMRNT--------------------GVKPTIITFTAILSACDHCGLVK 454
               Y  L L+N M +                      +KP  ITFT +LSAC+H G V 
Sbjct: 391 GNKLYSELPLYNAMISAYGLYGKVEEAITLYRDLEALDIKPDNITFTNLLSACNHTGSVN 450

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           +  + F  M  ++ + P +EHY  MVDLFA +G + EA+ +++ MP+E D  M  S+L  
Sbjct: 451 QAIQIFTDMVSKHGMQPCLEHYGLMVDLFASSGEIEEALRIVKDMPYEPDARMIQSLLAY 510

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C       L   +++ ++E +P+N+  Y+ +S+ +A  G WE+   +R++M+EK + K P
Sbjct: 511 CKKEHKTELVDYLSKYLLESEPDNSGNYVTISNAYAAGGNWEEVMKMREMMKEKGLKKKP 570

Query: 575 GCSW 578
           GCSW
Sbjct: 571 GCSW 574



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 117/534 (21%), Positives = 213/534 (39%), Gaps = 150/534 (28%)

Query: 148 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
           ++YGKCG  + A +V + M E                      R V         V WNS
Sbjct: 1   DMYGKCGILDDARKVFDRMPE----------------------RNV---------VAWNS 29

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA---- 263
           ++ GY+ N  + EA+ L   M   G+     T+++ LSA + +G +E GKQ H  A    
Sbjct: 30  LMVGYVQNGMNEEAIRLLSDMMNEGIEPTRVTVSTCLSASAHMGGIEEGKQSHAIAIVNG 89

Query: 264 ---------------CKVGVID------------DVIVASALLDTYSKRGMPSDA---CK 293
                          CKVG+I+            DV+  + L+  Y ++G+  DA   CK
Sbjct: 90  LELDNILGTSILNFYCKVGLIECAEMIFDKMIEKDVVTWNLLISGYVQQGLIEDAIYKCK 149

Query: 294 LF----------------------------SELKVY--------DTILLNTMITVYSSCG 317
           L                              +L+ Y        D +  +T + +Y+ CG
Sbjct: 150 LMRLENLKFDCVTISTLMSAAAHTQDLNLGKQLQCYCLRNSLESDIVSASTTVDMYAKCG 209

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
           RI DAK +F +  +K L+ WN+++   +++    EAL LF  M    +  +  S   +I 
Sbjct: 210 RILDAKKVFDSTVHKDLMLWNTLLAAYAESSHSGEALRLFYEMQLESVTPNVISWNLIIL 269

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKP 435
           +      +   + +F ++   G+  + I  T+L++   + GY  +A+  F +M+ +G++P
Sbjct: 270 SLLRXGQVTEAKXMFLQIQSTGISPNLISWTTLMNGLVQNGYSEEAIMYFKKMQESGLRP 329

Query: 436 TIITFTAILSACDH------------------------------------CGLVKEGQKW 459
              + T  LSAC +                                    CG + + ++ 
Sbjct: 330 NPFSXTVALSACSNLASLHFGRSIHGYIIRNQWHSGSVSLETSLLDMYAKCGDINKAERV 389

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL---IEQMPFEADVGMWSSILRGCV 516
           F    +      E+  Y+ M+  +   G + EA+ L   +E +  + D   ++++L  C 
Sbjct: 390 FGNKLYS-----ELPLYNAMISAYGLYGKVEEAITLYRDLEALDIKPDNITFTNLLSACN 444

Query: 517 AHGDKGLGRKVAERMIELDPENACA--YIQLSSIFATSGEWEKS-SLIRDIMRE 567
             G      ++   M+       C   Y  +  +FA+SGE E++  +++D+  E
Sbjct: 445 HTGSVNQAIQIFTDMVSKHGMQPCLEHYGLMVDLFASSGEIEEALRIVKDMPYE 498



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 176/386 (45%), Gaps = 47/386 (12%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  GKQ H   +  G+    + +   +L  Y + G    A ++FD+M  ++  +WN +I 
Sbjct: 75  IEEGKQSHAIAIVNGLELDNI-LGTSILNFYCKVGLIECAEMIFDKMIEKDVVTWNLLIS 133

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIHSHILVNGLDF 138
           G+++ G  E ++    +M  +N     + IS    A A    L  GKQ+  + L N L+ 
Sbjct: 134 GYVQQGLIEDAIYKCKLMRLENLKFDCVTISTLMSAAAHTQDLNLGKQLQCYCLRNSLES 193

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC-------------- 184
           D V  S+ V++Y KCG    A +V +     D    + L++ YA                
Sbjct: 194 DIVSASTTVDMYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAYAESSHSGEALRLFYEMQ 253

Query: 185 ---------------------GKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDT 219
                                G++ +A+ +F +   T    + + W ++++G + N    
Sbjct: 254 LESVTPNVISWNLIILSLLRXGQVTEAKXMFLQIQSTGISPNLISWTTLMNGLVQNGYSE 313

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASAL 278
           EA++ F KM+ +G+  +  +    LSACS+L  L  G+ +HG+  +       V + ++L
Sbjct: 314 EAIMYFKKMQESGLRPNPFSXTVALSACSNLASLHFGRSIHGYIIRNQWHSGSVSLETSL 373

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL---- 334
           LD Y+K G  + A ++F      +  L N MI+ Y   G++E+A  ++R +    +    
Sbjct: 374 LDMYAKCGDINKAERVFGNKLYSELPLYNAMISAYGLYGKVEEAITLYRDLEALDIKPDN 433

Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNM 360
           I++ +++   +  GS  +A+ +F +M
Sbjct: 434 ITFTNLLSACNHTGSVNQAIQIFTDM 459



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 144/367 (39%), Gaps = 77/367 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ L+ +      +++GKQL  + L+   L S +  A+  + MY +CG   DA  +FD  
Sbjct: 163 ISTLMSAAAHTQDLNLGKQLQCYCLRNS-LESDIVSASTTVDMYAKCGRILDAKKVFDST 221

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             ++   WN ++  + +  H  ++L+LF  M       N  SWN++I    +     +  
Sbjct: 222 VHKDLMLWNTLLAAYAESSHSGEALRLFYEMQLESVTPNVISWNLIILSLLRX--GQVTE 279

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALIS 179
            K +   I   G+  + +  ++L+N   + G    A      M+E    P+ F  +  +S
Sbjct: 280 AKXMFLQIQSTGISPNLISWTTLMNGLVQNGYSEEAIMYFKKMQESGLRPNPFSXTVALS 339

Query: 180 G------------------------------------YANCGKMNDARRVFDRTTDTSSV 203
                                                YA CG +N A RVF     +   
Sbjct: 340 ACSNLASLHFGRSIHGYIIRNQWHSGSVSLETSLLDMYAKCGDINKAERVFGNKLYSELP 399

Query: 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
           ++N+MIS Y    +  EA+ L+  +    +  D  T  ++LSAC+  G +    Q+    
Sbjct: 400 LYNAMISAYGLYGKVEEAITLYRDLEALDIKPDNITFTNLLSACNHTGSVNQAIQI---- 455

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
                           D  SK GM    C     L+ Y       M+ +++S G IE+A 
Sbjct: 456 --------------FTDMVSKHGM--QPC-----LEHY-----GLMVDLFASSGEIEEAL 489

Query: 324 HIFRTMP 330
            I + MP
Sbjct: 490 RIVKDMP 496



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   S+H G+ +H + ++    + ++ +   LL MY +CG+   A  +F       
Sbjct: 338 LSACSNLASLHFGRSIHGYIIRNQWHSGSVSLETSLLDMYAKCGDINKAERVFGNKLYSE 397

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISG---FAKADLAALEYG 124
              +NAMI  +   G  E+++ L+  +     + ++ ++  L+S        + A   + 
Sbjct: 398 LPLYNAMISAYGLYGKVEEAITLYRDLEALDIKPDNITFTNLLSACNHTGSVNQAIQIFT 457

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALIS 179
             +  H +   L+   +    +V+L+   G+   A +++ +M  EPD   + +L++
Sbjct: 458 DMVSKHGMQPCLEHYGL----MVDLFASSGEIEEALRIVKDMPYEPDARMIQSLLA 509


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/546 (31%), Positives = 263/546 (48%), Gaps = 85/546 (15%)

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDS 140
           M    +  +L   + +P    F     IS   KA    + LE   Q+H+ I+  GL  D 
Sbjct: 49  MTFIRRYTALTFPDYLPTLRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDH 105

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            + S  + L     +F+    V N +  P                               
Sbjct: 106 FIISQFLTLCNSLSNFSYTTSVFNGVSSP------------------------------- 134

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           S+V+WN+ I GY  N   +  + LF +M+R+  + D  T  S++ ACS +  ++ G   H
Sbjct: 135 STVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFH 194

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G A + GV  DV V ++L+D Y K G    A K+F E+   + +    MI  Y+S   + 
Sbjct: 195 GSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLV 254

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-------------LRM 367
           +A+ +F  MP K+ +SWN++I G  + G    A  +F  M   +             ++ 
Sbjct: 255 EARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKP 314

Query: 368 DKFSLASVISACANISSLELGEQV--FARVTIIGLDSDQIISTSLVDF------------ 413
           D+F + S++SAC+ + SLEL + V  + R + I +    +I+ +L+D             
Sbjct: 315 DEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIA-ALIDMNAKCGSMDRATK 373

Query: 414 ------------YCK---------CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                       YC          CG  A++LF+ M N G+ P  + FT IL+AC   GL
Sbjct: 374 LFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGL 433

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V EG  +F++MK  Y I P  +HY+CMVDL  RAG L EA  L++ MP E   G W ++L
Sbjct: 434 VDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALL 493

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H D  LG  VA+++ EL+P+NA  Y+ LS+I+A + +W   SL+R+ MRE+ + K
Sbjct: 494 GACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRK 553

Query: 573 LPGCSW 578
           +PGCSW
Sbjct: 554 IPGCSW 559



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/469 (24%), Positives = 217/469 (46%), Gaps = 66/469 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL++C T  ++   +Q+H   ++KG+      I ++ L +     N +    +F+ +
Sbjct: 76  ISTLLKACTTTSTL---EQVHARIIRKGLHQDHF-IISQFLTLCNSLSNFSYTTSVFNGV 131

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
              +   WN  I+G+ +      ++ LF  M +     + F++  LI   +K  +  ++ 
Sbjct: 132 SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSK--VCGVKE 189

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G   H   +  G+  D  + +SL++LYGKCG+   A +V + M E +    +A+I+GYA+
Sbjct: 190 GVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYAS 249

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRN----------- 231
              + +AR++FD   + ++V WN++ISGY+   +   A  +F +M  RN           
Sbjct: 250 FSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALIS 309

Query: 232 -GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
             V  D   + S++SACS +G LE  K V                    D Y ++     
Sbjct: 310 GNVKPDEFIMVSLMSACSQMGSLELAKWV--------------------DDYVRK----- 344

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
                S + V+   ++  +I + + CG ++ A  +F  MP + LIS+ SM+ GLS +G  
Sbjct: 345 -----SSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCG 399

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS- 409
            +A+ LF  M    L  D  +   +++AC+    ++ G   F       + +D  I  S 
Sbjct: 400 PQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFE-----SMKTDYSIVPSP 454

Query: 410 -----LVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACD-HCGL 452
                +VD   + G    A +  +++  V+P    + A+L AC  HC +
Sbjct: 455 DHYACMVDLLGRAGRLKEA-YELLKSMPVEPHAGAWGALLGACKLHCDI 502


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 242/453 (53%), Gaps = 64/453 (14%)

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           +++ +  E D   L+ LI+ Y+ CG +  AR+VFD   + S V WN+MI  Y  N  ++E
Sbjct: 78  KIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESE 137

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL +F +MR  G      T++SVLSAC         K++H  + K  +  ++ V +ALLD
Sbjct: 138 ALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLD 197

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K                               CG I+DA  +F +M +KS ++W+SM
Sbjct: 198 LYAK-------------------------------CGMIKDAVQVFESMQDKSSVTWSSM 226

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           + G  QN +  EAL L+    ++ L  ++F+L+SVI AC+N+++L  G+Q+ A +   G 
Sbjct: 227 VAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGF 286

Query: 401 DSDQIISTSLVDFYCKCG---------------------------------YDALALFNE 427
            S+  +++S VD Y KCG                                  + + LF +
Sbjct: 287 GSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEK 346

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M+  G+ P  +TF+++LS C H GLV+EG+++F  M+  Y + P + HYSCMVD+  RAG
Sbjct: 347 MQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAG 406

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
            L+EA  LI+ +PF+    +W S+L  C  + +  L    AE++ EL+PENA  ++ LS+
Sbjct: 407 LLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSN 466

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           I+A + +WE+ +  R ++R+  V K+ G SW D
Sbjct: 467 IYAANKQWEEIAKSRKLLRDCDVKKVRGKSWID 499



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 206/442 (46%), Gaps = 71/442 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C  + ++   K  H   ++   L   + + N L+  Y +CG    A  +FD M  R
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIRID-LEGDVTLLNVLINAYSKCGFVELARQVFDGMLER 117

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWN MI  + +   + ++L +F  M  +    ++F+ + ++S     +  ALE  K+
Sbjct: 118 SLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACG-VNCDALE-CKK 175

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H   +   +D +  +G++L++LY KCG    A QV   M+                   
Sbjct: 176 LHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ------------------- 216

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                   D+++ T S M    ++GY+ N    EALLL+ + +R  + ++  TL+SV+ A
Sbjct: 217 --------DKSSVTWSSM----VAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 264

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS+L  L  GKQ+H   CK G   +V VAS+ +D Y+K G   ++  +FSE++  +  L 
Sbjct: 265 CSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELW 324

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           NT+I+                               G +++  P E + LF  M +  + 
Sbjct: 325 NTIIS-------------------------------GFAKHARPKEVMILFEKMQQDGMH 353

Query: 367 MDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGYDALALF 425
            ++ + +S++S C +   +E G + F  + T  GL  + +  + +VD   + G  + A +
Sbjct: 354 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEA-Y 412

Query: 426 NEMRNTGVKPTIITFTAILSAC 447
             +++    PT   + ++L++C
Sbjct: 413 ELIKSIPFDPTASIWGSLLASC 434



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 146/296 (49%), Gaps = 39/296 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C  +      K+LH   +K  I +  L +   LL +Y +CG   DA+ +F+ M
Sbjct: 157 ISSVLSACGVNCDALECKKLHCLSVKTCI-DLNLYVGTALLDLYAKCGMIKDAVQVFESM 215

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             ++  +W++M+ G+++  + E++L L+        ++N F+ + +I   A ++LAAL  
Sbjct: 216 QDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVIC--ACSNLAALIE 273

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H+ I  +G   +  + SS V++Y KCG                             
Sbjct: 274 GKQMHAVICKSGFGSNVFVASSAVDMYAKCGS---------------------------- 305

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
              + ++  +F    + +  +WN++ISG+  +    E ++LF KM+++G+  +  T +S+
Sbjct: 306 ---LRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 362

Query: 244 LSACSSLGFLEHGKQVHG-HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           LS C   G +E G++         G+  +V+  S ++D   + G+ S+A +L   +
Sbjct: 363 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 418



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 174/412 (42%), Gaps = 80/412 (19%)

Query: 192 RVFDRTTDTSSVMWN-SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           +V  R ++TSS+  N S+++ Y     D E +      R +    + + +  +L  C+  
Sbjct: 15  KVLPRRSNTSSLSRNISVLASY-----DQEEV---SPGRYSNEFSNRNLVHEILQLCARN 66

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
           G +   K  HG   ++ +  DV + + L++ YSK                          
Sbjct: 67  GAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSK-------------------------- 100

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                CG +E A+ +F  M  +SL+SWN+MI   ++N    EALD+F  M     +  +F
Sbjct: 101 -----CGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEF 155

Query: 371 SLASVISACA-NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------- 419
           +++SV+SAC  N  +LE  +++        +D +  + T+L+D Y KCG           
Sbjct: 156 TISSVLSACGVNCDALEC-KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFES 214

Query: 420 -----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +AL L+   +   ++    T ++++ AC +   + EG
Sbjct: 215 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 274

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            K   A+  +      +   S  VD++A+ G L E+  +  ++  E ++ +W++I+ G  
Sbjct: 275 -KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EKNLELWNTIISGFA 332

Query: 517 AHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            H        + E+M +  + P N   +  L S+   +G  E+      +MR
Sbjct: 333 KHARPKEVMILFEKMQQDGMHP-NEVTFSSLLSVCGHTGLVEEGRRFFKLMR 383



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ +C+   ++  GKQ+H    K G   S + +A+  + MY +CG+  ++ ++F E+
Sbjct: 258 LSSVICACSNLAALIEGKQMHAVICKSG-FGSNVFVASSAVDMYAKCGSLRESYIIFSEV 316

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             +N   WN +I GF K    ++ + LF  M Q     N+ +++ L+S      L  +E 
Sbjct: 317 QEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGL--VEE 374

Query: 124 GKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           G++    +    GL  + V  S +V++ G+ G  + A +++  +  P D   S   S  A
Sbjct: 375 GRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI--PFDPTASIWGSLLA 432

Query: 183 NC 184
           +C
Sbjct: 433 SC 434


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 242/453 (53%), Gaps = 64/453 (14%)

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           +++ +  E D   L+ LI+ Y+ CG +  AR+VFD   + S V WN+MI  Y  N  ++E
Sbjct: 86  KIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESE 145

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           AL +F +MR  G      T++SVLSAC         K++H  + K  +  ++ V +ALLD
Sbjct: 146 ALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLD 205

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K                               CG I+DA  +F +M +KS ++W+SM
Sbjct: 206 LYAK-------------------------------CGMIKDAVQVFESMQDKSSVTWSSM 234

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           + G  QN +  EAL L+    ++ L  ++F+L+SVI AC+N+++L  G+Q+ A +   G 
Sbjct: 235 VAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGF 294

Query: 401 DSDQIISTSLVDFYCKCG---------------------------------YDALALFNE 427
            S+  +++S VD Y KCG                                  + + LF +
Sbjct: 295 GSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEK 354

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M+  G+ P  +TF+++LS C H GLV+EG+++F  M+  Y + P + HYSCMVD+  RAG
Sbjct: 355 MQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAG 414

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
            L+EA  LI+ +PF+    +W S+L  C  + +  L    AE++ EL+PENA  ++ LS+
Sbjct: 415 LLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSN 474

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           I+A + +WE+ +  R ++R+  V K+ G SW D
Sbjct: 475 IYAANKQWEEIAKSRKLLRDCDVKKVRGKSWID 507



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 206/442 (46%), Gaps = 71/442 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C  + ++   K  H   ++   L   + + N L+  Y +CG    A  +FD M  R
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRID-LEGDVTLLNVLINAYSKCGFVELARQVFDGMLER 125

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWN MI  + +   + ++L +F  M  +    ++F+ + ++S     +  ALE  K+
Sbjct: 126 SLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSA-CGVNCDALE-CKK 183

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H   +   +D +  +G++L++LY KCG    A QV   M+                   
Sbjct: 184 LHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ------------------- 224

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                   D+++ T S M    ++GY+ N    EALLL+ + +R  + ++  TL+SV+ A
Sbjct: 225 --------DKSSVTWSSM----VAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 272

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS+L  L  GKQ+H   CK G   +V VAS+ +D Y+K G   ++  +FSE++  +  L 
Sbjct: 273 CSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELW 332

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           NT+I+                               G +++  P E + LF  M +  + 
Sbjct: 333 NTIIS-------------------------------GFAKHARPKEVMILFEKMQQDGMH 361

Query: 367 MDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGYDALALF 425
            ++ + +S++S C +   +E G + F  + T  GL  + +  + +VD   + G  + A +
Sbjct: 362 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEA-Y 420

Query: 426 NEMRNTGVKPTIITFTAILSAC 447
             +++    PT   + ++L++C
Sbjct: 421 ELIKSIPFDPTASIWGSLLASC 442



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 146/296 (49%), Gaps = 39/296 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C  +      K+LH   +K  I +  L +   LL +Y +CG   DA+ +F+ M
Sbjct: 165 ISSVLSACGVNCDALECKKLHCLSVKTCI-DLNLYVGTALLDLYAKCGMIKDAVQVFESM 223

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             ++  +W++M+ G+++  + E++L L+        ++N F+ + +I   A ++LAAL  
Sbjct: 224 QDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVIC--ACSNLAALIE 281

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H+ I  +G   +  + SS V++Y KCG                             
Sbjct: 282 GKQMHAVICKSGFGSNVFVASSAVDMYAKCGS---------------------------- 313

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
              + ++  +F    + +  +WN++ISG+  +    E ++LF KM+++G+  +  T +S+
Sbjct: 314 ---LRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 370

Query: 244 LSACSSLGFLEHGKQVHG-HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           LS C   G +E G++         G+  +V+  S ++D   + G+ S+A +L   +
Sbjct: 371 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 426



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 174/412 (42%), Gaps = 80/412 (19%)

Query: 192 RVFDRTTDTSSVMWN-SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           +V  R ++TSS+  N S+++ Y     D E +      R +    + + +  +L  C+  
Sbjct: 23  KVLPRRSNTSSLSRNISVLASY-----DQEEV---SPGRYSNEFSNRNLVHEILQLCARN 74

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
           G +   K  HG   ++ +  DV + + L++ YSK                          
Sbjct: 75  GAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSK-------------------------- 108

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                CG +E A+ +F  M  +SL+SWN+MI   ++N    EALD+F  M     +  +F
Sbjct: 109 -----CGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEF 163

Query: 371 SLASVISACA-NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------- 419
           +++SV+SAC  N  +LE  +++        +D +  + T+L+D Y KCG           
Sbjct: 164 TISSVLSACGVNCDALEC-KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFES 222

Query: 420 -----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +AL L+   +   ++    T ++++ AC +   + EG
Sbjct: 223 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            K   A+  +      +   S  VD++A+ G L E+  +  ++  E ++ +W++I+ G  
Sbjct: 283 -KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EKNLELWNTIISGFA 340

Query: 517 AHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            H        + E+M +  + P N   +  L S+   +G  E+      +MR
Sbjct: 341 KHARPKEVMILFEKMQQDGMHP-NEVTFSSLLSVCGHTGLVEEGRRFFKLMR 391



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ +C+   ++  GKQ+H    K G   S + +A+  + MY +CG+  ++ ++F E+
Sbjct: 266 LSSVICACSNLAALIEGKQMHAVICKSG-FGSNVFVASSAVDMYAKCGSLRESYIIFSEV 324

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             +N   WN +I GF K    ++ + LF  M Q     N+ +++ L+S      L  +E 
Sbjct: 325 QEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGL--VEE 382

Query: 124 GKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           G++    +    GL  + V  S +V++ G+ G  + A +++  +  P D   S   S  A
Sbjct: 383 GRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI--PFDPTASIWGSLLA 440

Query: 183 NC 184
           +C
Sbjct: 441 SC 442


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 177/567 (31%), Positives = 274/567 (48%), Gaps = 110/567 (19%)

Query: 58  TDALLLFDE-MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
           T+   LF++   R + +SWN++I    + G   +SL+ F+ M +K D   N      A  
Sbjct: 32  TNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWM-RKLDIKPNRSTFPCAIK 90

Query: 117 DLAAL---EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
             +AL     GKQ H   LV G                                E D F 
Sbjct: 91  SCSALFDLNSGKQAHQQALVFGF-------------------------------ESDLFV 119

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL-----LFHKM 228
            SALI  Y+ CGK+++AR +FD     + V W S+I+GY+ N++  EAL+     LF K 
Sbjct: 120 SSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKS 179

Query: 229 RRNG----VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
             NG       D+  + SVLSACS +      + VHG A KVG+   + V + LLD Y+K
Sbjct: 180 EGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAK 239

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
                                          CG +  ++ +F  M  K ++SWNSMI   
Sbjct: 240 -------------------------------CGEVSLSRKVFDDMAEKDVVSWNSMIAVY 268

Query: 345 SQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
           +QNG   +A ++F  M K    + ++ +L++++ ACA+  +L +G  +  +V  +G  ++
Sbjct: 269 AQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNN 328

Query: 404 QIISTSLVDFYCKCGY---------------------------------DALALFNEMRN 430
            I++TS++D YCKCG                                  +AL +F +M  
Sbjct: 329 VIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIW 388

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
            GVKP  ITF ++L+AC H G ++EG +WF+AM  +Y+++P +EHY CMVDL  RAG + 
Sbjct: 389 AGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIK 448

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           EA NLI+ M    D  +W S+L  C  H D  L    A  + +LDP N   Y+ L++I+A
Sbjct: 449 EAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYA 508

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCS 577
            +G W+    +R +++++ + K PG S
Sbjct: 509 DAGRWKDVERMRILVKDRGLVKPPGYS 535



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 125/539 (23%), Positives = 238/539 (44%), Gaps = 104/539 (19%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           ++SC+    ++ GKQ H   L  G   S L +++ L+ MY +CG  ++A +LFDE+PRRN
Sbjct: 89  IKSCSALFDLNSGKQAHQQALVFG-FESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRN 147

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFN-------------VMPQKNDFSWNMLISGFAKADL 118
             +W ++I G+++     ++L +F              V    +  +   ++S  ++   
Sbjct: 148 IVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSN 207

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
            A+  G  +H   +  GLD    + ++L++ Y KCG+ + + +V + M E D    +++I
Sbjct: 208 KAVSEG--VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMI 265

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDA 237
           + YA                                N   T+A  +FH M +  G   + 
Sbjct: 266 AVYAQ-------------------------------NGLSTDAFEVFHGMLKAGGGKYNE 294

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            TL+++L AC+  G L  G  +H    K+G +++VI+A++++D Y K             
Sbjct: 295 VTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCK------------- 341

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                             CG+ E A++ F  M  K++ SW +MI G   +G   EALD+F
Sbjct: 342 ------------------CGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVF 383

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCK 416
             M    ++ +  +  SV++AC++   LE G + F A      ++        +VD   +
Sbjct: 384 YQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGR 443

Query: 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEH 475
            GY   A +N +++  V+   + + ++L+AC    + K+ +    + +  + +DP    +
Sbjct: 444 AGYIKEA-YNLIKSMKVRRDFVLWGSLLAACR---IHKDVELAEISARELFKLDPSNCGY 499

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
           Y  + +++                   AD G W  + R  +   D+GL +     ++EL
Sbjct: 500 YVLLANIY-------------------ADAGRWKDVERMRILVKDRGLVKPPGYSLVEL 539


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 172/604 (28%), Positives = 289/604 (47%), Gaps = 100/604 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C       +GK++H   LKKG L+  + + N L+ MY  C     A L+FD+M  R
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKG-LDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SW+ MI    +    + +L+L   M     + ++ +   +++ FA  D A +  GK 
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFA--DTANMRMGKA 216

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H++++                        NS N+    M  P     +AL+  YA CG 
Sbjct: 217 MHAYVI-----------------------RNSNNE---HMGVPTT---TALLDMYAKCGH 247

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           +  AR++F+  T  + V W +MI+G I +N   E   LF +M+   +  +  T+ S++  
Sbjct: 248 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVE 307

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C   G L+ GKQ+H +  + G    + +A+AL+D Y K                      
Sbjct: 308 CGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGK---------------------- 345

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    C  I +A+ +F +  N+ ++ W +M+   +Q     +A +LF  M    +R
Sbjct: 346 ---------CSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 396

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
             K ++ S++S CA   +L+LG+ V + +    ++ D I++T+LVD Y KCG        
Sbjct: 397 PTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRL 456

Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +AL +F EM   GVKP  ITF  +L AC H GLV
Sbjct: 457 FIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLV 516

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            EG+K F+ M   + + P+IEHY CMVDL  RAG L+EA  +I+ MP + +  +W +++ 
Sbjct: 517 TEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVA 576

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  LG   A +++E++PEN    + +S+I+A +  W  ++ +R  M+   + K 
Sbjct: 577 ACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKE 636

Query: 574 PGCS 577
           PG S
Sbjct: 637 PGHS 640



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 122/243 (50%), Gaps = 37/243 (15%)

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           SVL AC  + + + GK++HG   K G+  DV V +AL+                      
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALM---------------------- 136

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                     +Y  C  +E A+ +F  M  + ++SW++MI  LS+N     AL+L   MN
Sbjct: 137 ---------LMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMN 187

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI---ISTSLVDFYCKCG 418
            + +R  + ++ S+++  A+ +++ +G+ + A V I   +++ +    +T+L+D Y KCG
Sbjct: 188 FMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYV-IRNSNNEHMGVPTTTALLDMYAKCG 246

Query: 419 YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
           +  L L  ++ N   + T++++TA+++ C     ++EG K F  M+ +     EI   S 
Sbjct: 247 H--LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSL 304

Query: 479 MVD 481
           +V+
Sbjct: 305 IVE 307


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 169/592 (28%), Positives = 277/592 (46%), Gaps = 101/592 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H   +K G  +S + + N LL+MY   G   +A L+F +MP ++  SWN+++  F+
Sbjct: 381 GRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFV 439

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY---GKQIHSHILVNGLDFDS 140
             G    +L +   M +    S N +    A A   + E+   G+ +H  ++V+GL  + 
Sbjct: 440 NDGRSLDALGILCSMIRTGK-SVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQ 498

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
           ++G++LV++YGK                                G M+ +RRV  +    
Sbjct: 499 IIGNALVSMYGKI-------------------------------GGMSTSRRVLLQMPRR 527

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQV 259
             V WN++I GY  N +  +AL  F  +R  GV  +  T+ SVLSAC   G  LE GK +
Sbjct: 528 DVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPL 587

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H +    G   D  V                                N++IT+Y+ CG +
Sbjct: 588 HAYIVSAGFESDEHVK-------------------------------NSLITMYAKCGDL 616

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
             ++ +F  + N+S+I+WN+++   + +G   E L L   M    L +D+FS +  +SA 
Sbjct: 617 SSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAA 676

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-------------------- 419
           A ++ LE G+Q+      +G + D  I  +  D Y KCG                     
Sbjct: 677 AKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWN 736

Query: 420 -------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        +    F+EM   G+KP  +TF ++L+AC H GLV +G  ++D +   
Sbjct: 737 ILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKD 796

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           + ++P IEH  C++DL  R+G L EA   I +MP + +  +W S+L  C  H D   GRK
Sbjct: 797 FGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRK 856

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            AE + +L+PE+   ++  S++FAT+G WE    +R  M  K++ K   CSW
Sbjct: 857 AAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSW 908



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 212/462 (45%), Gaps = 72/462 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ ++ SC       +G+Q+    +K G L S L + N L+ M+   GN   A  +F+++
Sbjct: 264 MSLVISSCGLLKDESLGRQIIGQVIKSG-LESKLAVENSLISMFGNMGNVDYANYIFNQI 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
             R+  SWN+++  + + GH E+S ++FN+M + +D   +  +S       D+   ++G+
Sbjct: 323 SERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGR 382

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IH   LV  + FDSV+          C      N +L M               YA  G
Sbjct: 383 GIHG--LVVKMGFDSVV----------C----VCNTLLRM---------------YAGAG 411

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           +  +A  VF +      + WNS+++ ++++    +AL +   M R G   +  T  S L+
Sbjct: 412 RSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALA 471

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC S  F + G+ +HG     G+ D+ I+ +AL+  Y K                     
Sbjct: 472 ACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGK--------------------- 510

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                      G +  ++ +   MP + +++WN++I G ++N  P +AL  F  +    +
Sbjct: 511 ----------IGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGV 560

Query: 366 RMDKFSLASVISACANISS-LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDAL 422
             +  ++ SV+SAC      LE G+ + A +   G +SD+ +  SL+  Y KCG    + 
Sbjct: 561 SANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQ 620

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
            LFN + N     +IIT+ AIL+A  H G  +E  K    M+
Sbjct: 621 DLFNGLDNR----SIITWNAILAANAHHGHGEEVLKLVSKMR 658



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 116/468 (24%), Positives = 209/468 (44%), Gaps = 43/468 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
           N +I  + K G  + +  LF+ MP +N+ SWN ++SG  +  L  LE G +    +   G
Sbjct: 97  NTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLY-LE-GMEFFQKMCDLG 154

Query: 136 LDFDSVLGSSLVNLYGKCGD-FNSANQVLNMMKEP----DDFCLSALISGYANCGKMNDA 190
           +   S + +SLV   G+ G  F    QV   + +     D +  +A++  Y   G ++ +
Sbjct: 155 IKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCS 214

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           R+VF+   D + V W S++ GY    E  E + ++  MR  GV  + ++++ V+S+C  L
Sbjct: 215 RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLL 274

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
                G+Q+ G   K G+   + V ++L+  +   G    A  +F+++   DTI  N+++
Sbjct: 275 KDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIV 334

Query: 311 TVYSSCGRIEDAKHIFRTMP------NKSLISWNSMIVG---LSQNGSPIEALDLFCNMN 361
             Y+  G IE++  IF  M       N + +S    ++G     + G  I  L +     
Sbjct: 335 AAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVV----- 389

Query: 362 KLDLRMDKFSLASVISAC-------ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
                  K    SV+  C       A     E  + VF ++       D I   SL+  +
Sbjct: 390 -------KMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPT----KDLISWNSLMASF 438

Query: 415 CKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
              G   DAL +   M  TG     +TFT+ L+AC       +G+     +      D +
Sbjct: 439 VNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQ 498

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
           I   + +V ++ + G ++ +  ++ QMP   DV  W++++ G   + D
Sbjct: 499 IIG-NALVSMYGKIGGMSTSRRVLLQMP-RRDVVAWNALIGGYAENED 544


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 177/607 (29%), Positives = 293/607 (48%), Gaps = 104/607 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     + VG+QLH   +KK    S L + N L+ MY + G   +A   F+ M  R
Sbjct: 324 ILSTCACFEYLEVGRQLHSAIIKKR-FTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYR 382

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWNA+I G+++   +  +  LF  M       ++ S   ++S  A  ++  LE G+Q
Sbjct: 383 DHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILS--ACGNIKVLEAGQQ 440

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
            H   +  GL+ +   GSSL+++Y K                               CG 
Sbjct: 441 FHCLSVKLGLETNLFAGSSLIDMYSK-------------------------------CGD 469

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + DA + +    + S V  N++I+GY   N   E++ L H+M+  G+     T AS++  
Sbjct: 470 IKDAHKTYSSMPERSVVSVNALIAGYALKNTK-ESINLLHEMQILGLKPSEITFASLIDV 528

Query: 247 CSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           C     +  G Q+H    K G++     + ++LL  Y      +DA  LFSE        
Sbjct: 529 CKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSE-------- 580

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                  +SS                KS++ W ++I G  QN     AL+L+  M   ++
Sbjct: 581 -------FSSL---------------KSIVMWTALISGHIQNECSDVALNLYREMRDNNI 618

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             D+ +  +V+ ACA +SSL  G ++ + +   G D D++ S++LVD Y KCG       
Sbjct: 619 SPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQ 678

Query: 419 -------------------------YD--ALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                    Y   AL +F+EM  + + P  +TF  +L+AC H G
Sbjct: 679 VFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAG 738

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            V EG++ FD M   Y I+P ++HY+CMVDL  R G L EA   I+++  E +  +W+++
Sbjct: 739 WVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANL 798

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C  HGD+  G++ A+++IEL+P+++  Y+ LS+++A SG W+++  +R  M +K + 
Sbjct: 799 LGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQ 858

Query: 572 KLPGCSW 578
           K+PGCSW
Sbjct: 859 KIPGCSW 865



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 204/478 (42%), Gaps = 113/478 (23%)

Query: 29  LHFLKKGILNSTLPIANRL---LQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFM 83
           LH   K + NS +P    L   L  Y+  G   DA  LF +MP   RN  +WN MI G  
Sbjct: 135 LHIFDK-MRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHA 193

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIHSHILVNGLDFDSV 141
           K  H E++L  F+ M +    S    ++    A A LAAL +G  +H+H +  G +    
Sbjct: 194 KTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIY 253

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           + SSL+N+YGKC             + PD                  DAR+VFD  +  +
Sbjct: 254 VASSLINMYGKC-------------QMPD------------------DARQVFDAISQKN 282

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            ++WN+M+  Y  N   +  + LF  M   G+  D  T  S+LS C+   +LE G+Q+H 
Sbjct: 283 MIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHS 342

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
              K     ++ V +AL+D Y+K G   +A K F  +   D                   
Sbjct: 343 AIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDH------------------ 384

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
                        ISWN++IVG  Q      A  LF  M    +  D+ SLAS++SAC N
Sbjct: 385 -------------ISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGN 431

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------- 418
           I  LE G+Q       +GL+++    +SL+D Y KCG                       
Sbjct: 432 IKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNAL 491

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACD-----------HCGLVKEG 456
                     +++ L +EM+  G+KP+ ITF +++  C            HC +VK G
Sbjct: 492 IAGYALKNTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRG 549



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 132/501 (26%), Positives = 214/501 (42%), Gaps = 110/501 (21%)

Query: 75  WNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           WN  ++G  K    E+ LQ +    N     + F++ + +S  AK  L  L  G+ +HS 
Sbjct: 16  WNWRVQG-TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAK--LQNLHLGRAVHSC 72

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS--ALISGYANCGKMN 188
           ++ +GL+  S    +L++LY KC     A  +      P    +S  ALISGY   G  +
Sbjct: 73  VIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPH 132

Query: 189 DARRVFDRTTDTSS------------------------------------VMWNSMISGY 212
           +A  +FD+  +++                                     V WN MISG+
Sbjct: 133 EALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGH 192

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
                  EAL  FH+M ++GV    STLASVLSA +SL  L HG  VH HA K G    +
Sbjct: 193 AKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSI 252

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            VAS+L++ Y K  MP DA ++F  +   + I+ N M+ VY                   
Sbjct: 253 YVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVY------------------- 293

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
                       SQNG     ++LF +M    +  D+F+  S++S CA    LE+G Q+ 
Sbjct: 294 ------------SQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLH 341

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG---------------------------------Y 419
           + +      S+  ++ +L+D Y K G                                  
Sbjct: 342 SAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEA 401

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
            A +LF  M   G+ P  ++  +ILSAC +  +++ GQ+ F  +  +  ++  +   S +
Sbjct: 402 GAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQ-FHCLSVKLGLETNLFAGSSL 460

Query: 480 VDLFARAGCLNEAVNLIEQMP 500
           +D++++ G + +A      MP
Sbjct: 461 IDMYSKCGDIKDAHKTYSSMP 481



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 43/260 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A L+  C     + +G Q+H   +K+G+L  +  +   LL MYM      DA +LF E 
Sbjct: 522 FASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEF 581

Query: 68  PR-RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAA 120
              ++   W A+I G ++    + +L L+      N+ P +  F   +     A A L++
Sbjct: 582 SSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQ----ACALLSS 637

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALIS 179
           L  G++IHS I   G D D +  S+LV++Y KCGD  S+ QV   +  + D    +++I 
Sbjct: 638 LHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIV 697

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
           G+A  G    A +VFD                               +M ++ +  D  T
Sbjct: 698 GFAKNGYAKCALKVFD-------------------------------EMTQSCITPDDVT 726

Query: 240 LASVLSACSSLGFLEHGKQV 259
              VL+ACS  G++  G+Q+
Sbjct: 727 FLGVLTACSHAGWVYEGRQI 746



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 10/193 (5%)

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           WN  + G +++ S    L  + +        D+F+ A  +SACA + +L LG  V + V 
Sbjct: 16  WNWRVQG-TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVI 74

Query: 397 IIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTI--ITFTAILSACDHCGLVK 454
             GL+S      +L+  Y KC  ++L     +  +   P +  +++TA++S     GL  
Sbjct: 75  KSGLESTSFCQGALIHLYAKC--NSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPH 132

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE-ADVGMWSSILR 513
           E    FD M+      P+      +++ +   G L++A  L +QMP    +V  W+ ++ 
Sbjct: 133 EALHIFDKMR--NSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMIS 190

Query: 514 G--CVAHGDKGLG 524
           G    AH ++ L 
Sbjct: 191 GHAKTAHYEEALA 203


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/440 (32%), Positives = 234/440 (53%), Gaps = 39/440 (8%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGV 233
           +AL+  YAN   ++DA +VFD   +   V W +++ GY       EA  LF +M    G+
Sbjct: 182 NALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGM 241

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
             +A TL + +SA   +G L  G  +H +  + GV   V + +AL+D + K G    A +
Sbjct: 242 RPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYARE 301

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           +F  ++V D     +M+  Y+ CG +E A+ +F+ MP ++++SW+ MI   SQ   P EA
Sbjct: 302 VFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEA 361

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI---IGLDSDQIISTSL 410
           + LF  M    +     +L SV+SACA +  L+LG  ++    +   IGL  +  +  +L
Sbjct: 362 VWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVN--LGNAL 419

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           +D + KCG                                  +A+ LF +++   + P  
Sbjct: 420 IDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQ 479

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           ITF  +L++C H GLV EG+++F  M+  Y I+P +EHY+CM+DL  + G L EA  +  
Sbjct: 480 ITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVAR 539

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
            MP EAD   W ++L  C  HG+  +G  VA++++ELDP ++  Y+ +S I+A+  +W++
Sbjct: 540 GMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQ 599

Query: 558 SSLIRDIMREKHVGKLPGCS 577
             ++R  MR++ V K PGCS
Sbjct: 600 VKMLRMTMRDRGVKKNPGCS 619


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 178/588 (30%), Positives = 289/588 (49%), Gaps = 101/588 (17%)

Query: 45  NRLLQMYMRCGNP--TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           N +L  Y+ CG      A  +FD+MP  +C SWN M+ G+ K G  +K+ +LFN MP++N
Sbjct: 123 NLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERN 182

Query: 103 DFSWNMLISGFAKADLA--ALEYGKQIHSH------ILVNGLDFDSVLGSSLVNLYGKCG 154
             SWN ++SG+        A+E+ K +          LV+GL  +  L  +   L    G
Sbjct: 183 VVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGG 242

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT--------TDTSSVMWN 206
           +    + V       D +  + LI+GY   G   +AR++FDR         +  + + WN
Sbjct: 243 NVGKGDLV-------DAY--NTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWN 293

Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266
           SMI  Y+   +   A  LF KM    V  D  +  +++S     G+++            
Sbjct: 294 SMIMCYVRAGDIVSARELFDKM----VERDTFSWNTMIS-----GYVQ------------ 332

Query: 267 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 326
                      +LD         +A  LFS +   DT+  N MI+ +S  G ++ A  +F
Sbjct: 333 -----------ILDM-------KEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLF 374

Query: 327 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
           + +P KSL+SWNSMI G  +N     A+++F  M     + D+ +L+S++SACA +  L 
Sbjct: 375 KRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLV 434

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------------- 418
           LG Q+   VT     +D  I+ SLV  Y +CG                            
Sbjct: 435 LGTQIHQLVTK-AFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGY 493

Query: 419 ------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
                  +AL LF+ M+   V+P+ ITF ++L+AC H GL++EG++ F++M   + I P+
Sbjct: 494 AYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQ 553

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
           +EHY+ +VD+  R G L EA++LI  MP E D  +W ++L  C  H +  + R  AE ++
Sbjct: 554 VEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALM 613

Query: 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +L PE++  Y+ L +++A  G W+ ++ +R +M + +V K  G S  D
Sbjct: 614 KLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 168/367 (45%), Gaps = 29/367 (7%)

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
           N  + P+ + L+  IS     G++N+AR +FD T   +++ WN MI+ Y+   E  +A  
Sbjct: 50  NSFQVPEFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQ 109

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           LF +M    ++     L+  +S      F+E  + +     +     D +  + +L  Y+
Sbjct: 110 LFEEMPNRDIVSWNLMLSGYISCGGK--FVERARNMFDQMPET----DCVSWNTMLSGYA 163

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           K G    A +LF+E+   + +  N M++ Y   G +E A   F+ MP +   S  +++ G
Sbjct: 164 KSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSG 223

Query: 344 LSQNGSPIEA----LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-- 397
           L QN   +EA    L    N+ K DL +D ++  ++I+            ++F R+ +  
Sbjct: 224 LIQNDKLVEAERILLQYGGNVGKGDL-VDAYN--TLIAGYGQKGMAYEARKLFDRIPLCC 280

Query: 398 -IGLDSDQIIS-TSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
             G     +IS  S++  Y + G    A  LF++M    V+    ++  ++S       +
Sbjct: 281 DCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKM----VERDTFSWNTMISGYVQILDM 336

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           KE    F  M      +P+   ++ M+  F+  G L  A +L +++P E  +  W+S++ 
Sbjct: 337 KEASNLFSRMP-----EPDTLSWNMMISGFSEIGSLKLAHDLFKRIP-EKSLVSWNSMIS 390

Query: 514 GCVAHGD 520
           G   + D
Sbjct: 391 GYEKNED 397



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 7/178 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C     + +G Q+H    K  I  + LPI N L+ MY RCG   +A ++FDEM
Sbjct: 420 LSSILSACAGLVDLVLGTQIHQLVTKAFI--ADLPINNSLVTMYSRCGAIVEARMVFDEM 477

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYG 124
             +R+  SWNAMI G+   G   ++LQLF++M Q N   S+   IS   A A    +E G
Sbjct: 478 NLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEG 537

Query: 125 -KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
            ++ +S +  +G+       ++LV++ G+ G    A  ++N M  EPD     AL+  
Sbjct: 538 RREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGA 595


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/494 (31%), Positives = 239/494 (48%), Gaps = 96/494 (19%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A++ GKQ+H+ + + G  FD+V+ + LVNLY                      C+     
Sbjct: 90  AIKPGKQLHAQVCLAGFGFDTVIATKLVNLY----------------------CV----- 122

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               C  ++ AR +FDR    +  +WN +I GY  N     A+ L+++M   G++ D  T
Sbjct: 123 ----CDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFT 178

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
              VL AC++L  +EHG+++H H  + G   DV V +AL+D Y+K               
Sbjct: 179 FPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAK--------------- 223

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                           CG +  A+ +F  +  +  + WNSM+   SQNG P   L L   
Sbjct: 224 ----------------CGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSE 267

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M    LR  + +L + ISA A+ ++L  G ++         +S   + T+LVD Y KCG 
Sbjct: 268 MVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGS 327

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            +AL LF EM N   KP  ITF  +LSA
Sbjct: 328 VRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSA 386

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL++EG  +F+ M   Y IDP ++HY+CMVDL   +G L+EA NLI QM    D G
Sbjct: 387 CSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSG 446

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C  H +  LG    ER+IEL+P++A  Y+ LS+I+A +G+WE  + +R +M 
Sbjct: 447 VWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMT 506

Query: 567 EKHVGKLPGCSWAD 580
           ++ + K   CSW +
Sbjct: 507 DRRLKKSIACSWIE 520



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 35/173 (20%)

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------- 417
           AS++ +C    +++ G+Q+ A+V + G   D +I+T LV+ YC C               
Sbjct: 79  ASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPK 138

Query: 418 -----------GY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                      GY        A+ L+ +M + G+ P   TF  +L AC     ++ G++ 
Sbjct: 139 HNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREI 198

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
            + +  Q   + ++   + ++D++A+ GC+  A  + +++    D  +W+S+L
Sbjct: 199 HEHVV-QTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKI-LVRDAVLWNSML 249


>gi|334187761|ref|NP_197403.2| mitochondrial editing factor 18 [Arabidopsis thaliana]
 gi|223635651|sp|P0C8Q8.1|PP394_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g19020, mitochondrial; Flags: Precursor
 gi|332005257|gb|AED92640.1| mitochondrial editing factor 18 [Arabidopsis thaliana]
          Length = 685

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 176/634 (27%), Positives = 315/634 (49%), Gaps = 73/634 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   L SC + + +  G+Q+H   LK G L+S   I N +L MY +C    DA  +F + 
Sbjct: 44  LVSALGSCASSNDVTCGRQIHCRVLKSG-LDSNGYICNSVLNMYAKCRLLADAESVFRDH 102

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
            + +  S+N M++G+++      +L+LF+VMP+++  S+  LI G+A+ +    A+E  +
Sbjct: 103 AKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFR 162

Query: 126 QIHS-HILVNGLDFDSVLG------------------------------SSLVNLYGKCG 154
           ++ +  I++N +   +V+                               ++L+++Y  C 
Sbjct: 163 EMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYCLCL 222

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
               A ++ + M E +    + +++GY+  G +  A  +FD+ T+   V W +MI G + 
Sbjct: 223 CLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMIDGCLR 282

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274
            N+  EAL+ + +M R G+      +  +LSA +       G Q+HG   K G      +
Sbjct: 283 KNQLDEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKRGFDCYDFL 342

Query: 275 ASALLDTYSKRGMPSDACKLFSELKVYDTIL-LNTMITVYSSCGRIEDAKHIFRTMPNKS 333
            + ++  Y+       A + F E  V D I   N +I  +   G +E A+ +F    +K 
Sbjct: 343 QATIIHFYAVSNDIKLALQQF-EASVKDHIASRNALIAGFVKNGMVEQAREVFDQTHDKD 401

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVF 392
           + SWN+MI G +Q+ SP  AL LF  M +   ++ D  ++ SV SA +++ SLE G++  
Sbjct: 402 IFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAH 461

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCGYD-------------------------------- 420
             +    +  +  ++ +++D Y KCG                                  
Sbjct: 462 DYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAIICGSATHG 521

Query: 421 ----ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
               AL L++++++  +KP  ITF  +LSAC H GLV+ G+ +F++MK  + I+P+I+HY
Sbjct: 522 HAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIEPDIKHY 581

Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
            CMVDL  +AG L EA  +I++MP +ADV +W  +L     HG+  +    A  +  +DP
Sbjct: 582 GCMVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASRTHGNVEIAELAATELAAIDP 641

Query: 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
            +    + LS+++A +G WE  +L+R+ MR + V
Sbjct: 642 SHGGCKVMLSNVYADAGRWEDVALVREEMRTRDV 675



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 88/245 (35%), Gaps = 105/245 (42%)

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------------- 417
           +L S + +CA+ + +  G Q+  RV   GLDS+  I  S+++ Y KC             
Sbjct: 43  ALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVFRDH 102

Query: 418 -------------GY-------DALALFN------------------------------- 426
                        GY       DAL LF+                               
Sbjct: 103 AKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFR 162

Query: 427 EMRNTGVKPTIITFTAILSACDH-----------------------------------CG 451
           EMRN G+    +T   ++SAC H                                   C 
Sbjct: 163 EMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYCLCL 222

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
            +K+ +K FD M      +  +  ++ M++ +++AG + +A  L +Q+  E D+  W ++
Sbjct: 223 CLKDARKLFDEMP-----ERNLVTWNVMLNGYSKAGLIEQAEELFDQIT-EKDIVSWGTM 276

Query: 512 LRGCV 516
           + GC+
Sbjct: 277 IDGCL 281


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 180/661 (27%), Positives = 290/661 (43%), Gaps = 145/661 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL++C     + +G Q+H   +K G L   +   + L+ MY +C +  DAL  F  M
Sbjct: 166 LAVLLKACGGLDDLALGVQIHALAVKTG-LEMDVRAGSALVDMYGKCRSLEDALHFFHGM 224

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
             RN  SW A+I G ++     + L+L                    KA +  L   +Q+
Sbjct: 225 GERNSVSWGAVIAGCVQNEQYMRGLELLCR----------------CKA-ITCLSTARQL 267

Query: 128 HSHILVNGLDFDSVLGSSLVNLYG-------------------------------KCGDF 156
           H+H + N    D V+G+++V++Y                                + G  
Sbjct: 268 HAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLG 327

Query: 157 NSANQVLNMMKEPD-----------------------DFCL-SALISGYANCGKMNDARR 192
             A Q+   M                           D C+ +A++  Y  C  + +A  
Sbjct: 328 AEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVKGFDVDVCVRNAILDLYGKCKALVEAYL 387

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           VF       SV WN++I+    N    + ++  ++M R+G+  D  T  SVL AC+ L  
Sbjct: 388 VFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQS 447

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           LE+G  VHG A K G+  D  V+S ++D Y K                            
Sbjct: 448 LEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCK---------------------------- 479

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
              CG I +A  +   +  + L+SWNS+I G S N    EA   F  M  + ++ D F+ 
Sbjct: 480 ---CGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTY 536

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
           A+V+ +CAN++++ELG+Q+  ++    +  D+ IS++LVD Y KCG              
Sbjct: 537 ATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQK 596

Query: 419 -------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                              ++AL +F   +   V P   TF A+L AC H GL+ +G ++
Sbjct: 597 LDFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRY 656

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           F  M  +Y ++P++EH++CM           EA+  I  MP EAD  +W ++L  C    
Sbjct: 657 FHLMTSRYKLEPQLEHFACMGP--------QEALKFIRSMPLEADAVIWKTLLSICKIRQ 708

Query: 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579
           D  +    A  ++ LDP+++  YI LS+++A SG+W   S  R +MR+  + K PGCSW 
Sbjct: 709 DVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWI 768

Query: 580 D 580
           +
Sbjct: 769 E 769



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 155/630 (24%), Positives = 244/630 (38%), Gaps = 166/630 (26%)

Query: 18  HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA 77
           H ++  G+  H   L  G +  T+ ++N LLQMY RCG    A  +FD MP R+  SWN 
Sbjct: 44  HSALATGQAAHARMLVSGFV-PTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNT 102

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF------------------------ 113
           M+  +  +G    +  L  VMP  +  SWN L+SG+                        
Sbjct: 103 MLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPD 162

Query: 114 ---------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
                    A   L  L  G QIH+  +  GL+ D   GS+LV++YGKC     A    +
Sbjct: 163 RTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFH 222

Query: 165 MMKEPDDFCLSALISG-------------------------------------------- 180
            M E +     A+I+G                                            
Sbjct: 223 GMGERNSVSWGAVIAGCVQNEQYMRGLELLCRCKAITCLSTARQLHAHAIKNKFSSDRVV 282

Query: 181 -------YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
                  YA    + DARR F    + +    N+M+ G +      EA+ LF  M R+G+
Sbjct: 283 GTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGI 342

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
                +L+ V SAC+ +                G   DV V +A+LD Y K       CK
Sbjct: 343 GFGVVSLSGVFSACAEVK---------------GFDVDVCVRNAILDLYGK-------CK 380

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
              E                        A  +F+ M  +  +SWN++I  L QN    + 
Sbjct: 381 ALVE------------------------AYLVFQEMEQRDSVSWNTIIAALEQNECYEDT 416

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           +     M +  +  D F+  SV+ ACA + SLE G  V  +    GL  D  +S+++VD 
Sbjct: 417 IVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDM 476

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           YCKCG                                  +A   F+EM + GVKP   T+
Sbjct: 477 YCKCGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTY 536

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
             +L +C +   ++ G++    +  Q  +  E    S +VD++A+ G + ++  + E++ 
Sbjct: 537 ATVLDSCANLATIELGKQIHGQIIKQEMLGDEFIS-STLVDMYAKCGNMPDSQLMFEKVQ 595

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAER 530
            + D   W++++ G   HG      ++ ER
Sbjct: 596 -KLDFVSWNAMICGYALHGQGFEALEMFER 624



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 196/490 (40%), Gaps = 111/490 (22%)

Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
           A A  +AL  G+  H+ +LV+G      + + L+ +Y +CG    A+ V + M   D   
Sbjct: 40  ASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVS 99

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
            + +++ YA+ G    A  +     D   V WN+++SGY       + + L  +M R GV
Sbjct: 100 WNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGV 159

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
             D +TLA +L AC  L  L  G Q+H  A K G+  DV   SAL+D Y K     DA  
Sbjct: 160 APDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALH 219

Query: 294 LFSELKVYDTILLNTMIT------------------------------------------ 311
            F  +   +++    +I                                           
Sbjct: 220 FFHGMGERNSVSWGAVIAGCVQNEQYMRGLELLCRCKAITCLSTARQLHAHAIKNKFSSD 279

Query: 312 ---------VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                    VY+    + DA+  F  +PN ++ + N+M+VGL + G   EA+ LF  M +
Sbjct: 280 RVVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTR 339

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
             +     SL+ V SACA +                G D D  +  +++D Y KC     
Sbjct: 340 SGIGFGVVSLSGVFSACAEVK---------------GFDVDVCVRNAILDLYGKCKALVE 384

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACD- 448
                                         D +   NEM  +G++    T+ ++L AC  
Sbjct: 385 AYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAG 444

Query: 449 ----HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
                 GLV  G+    A+K    +D  +   S +VD++ + G + EA+ L +++  +  
Sbjct: 445 LQSLEYGLVVHGK----AIKSGLGLDAFVS--STVVDMYCKCGMITEALKLHDRIGGQEL 498

Query: 505 VGMWSSILRG 514
           V  W+SI+ G
Sbjct: 499 VS-WNSIIAG 507



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 12/216 (5%)

Query: 238 STLASVLSACSSLGF--LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           +T + V   C+S G   L  G+  H      G +  + V++ LL  Y++ G  + A  +F
Sbjct: 30  ATFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVF 89

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
             +   DT+  NTM+T Y+  G    A  +   MP+  ++SWN+++ G  Q G   + + 
Sbjct: 90  DTMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVG 149

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           L   M +  +  D+ +LA ++ AC  +  L LG Q+ A     GL+ D    ++LVD Y 
Sbjct: 150 LSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYG 209

Query: 416 KCG--YDALALFNEM--RNTGVKPTIITFTAILSAC 447
           KC    DAL  F+ M  RN+      +++ A+++ C
Sbjct: 210 KCRSLEDALHFFHGMGERNS------VSWGAVIAGC 239


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 179/618 (28%), Positives = 291/618 (47%), Gaps = 105/618 (16%)

Query: 3   TRIDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           T  DY+    LL  CN H   +   Q+    +K G  +S L + N L+  Y +      A
Sbjct: 145 TEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLG-YDSRLIVGNTLVDSYCKSNRLDLA 203

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKA 116
             LF EMP  +  S+NAMI G+ K G  EK++ LF  M     +  +F++  ++   A  
Sbjct: 204 CQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLC--ANI 261

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            L  +  G+QIHS ++                           N V N+      F  +A
Sbjct: 262 GLDDIVLGQQIHSFVI-------------------------KTNFVWNV------FVSNA 290

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+  Y+    + DAR++FD   +   V +N +ISGY  + +   A  LF +++       
Sbjct: 291 LLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRK 350

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
               A++LS  S+    E G+Q+H          +++V ++L+D Y+K            
Sbjct: 351 QFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAK------------ 398

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                              CG+ E+A+ IF  + ++S + W +MI    Q G   E L L
Sbjct: 399 -------------------CGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQL 439

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M +  +  D+ + AS++ A A+I+SL LG+Q+ + +   G  S+    ++L+D Y K
Sbjct: 440 FNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAK 499

Query: 417 CG--YDALALFNEM--RN-----------------------------TGVKPTIITFTAI 443
           CG   DA+  F EM  RN                             +G++P  ++F  +
Sbjct: 500 CGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGV 559

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC H GLV+EG   F++M   Y +DP  EHY+ +VD+  R+G  NEA  L+ +MP + 
Sbjct: 560 LSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDP 619

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSIFATSGEWEKSSLIR 562
           D  MWSS+L  C  H ++ L R+ A+++  ++   +A  Y+ +S+I+A +G+WE  S + 
Sbjct: 620 DEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVH 679

Query: 563 DIMREKHVGKLPGCSWAD 580
             MR++ V KLP  SW +
Sbjct: 680 KAMRDRGVKKLPAYSWVE 697



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 141/579 (24%), Positives = 259/579 (44%), Gaps = 67/579 (11%)

Query: 51  YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           +++ G  + A  LF++MP +N  S N MI G++K G+  ++ +LF+ M ++   +W +LI
Sbjct: 62  FLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILI 121

Query: 111 SGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 170
            G+++  L   +   ++   +   G + D V   + V L   C      NQ+  +  +  
Sbjct: 122 GGYSQ--LNQFKEAFELFVQMQRCGTEPDYV---TFVTLLSGCNGHEMGNQITQVQTQII 176

Query: 171 DFCLSA-------LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
                +       L+  Y    +++ A ++F    +  SV +N+MI+GY  +  D +A+ 
Sbjct: 177 KLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVN 236

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           LF +M+ +G+     T A+VL A   L  +  G+Q+H    K   + +V V++ALLD YS
Sbjct: 237 LFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYS 296

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           K     DA KLF E+   D +  N +I+ Y+      D KH +                 
Sbjct: 297 KHDSVIDARKLFDEMPEQDGVSYNVIISGYAW-----DGKHKY----------------- 334

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
                    A DLF  +        +F  A+++S  +N    E+G Q+ A+  +   DS+
Sbjct: 335 ---------AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSE 385

Query: 404 QIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
            ++  SLVD Y KCG   +A  +F  + +    P    +TA++SA    G  +EG + F+
Sbjct: 386 ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP----WTAMISAYVQKGFYEEGLQLFN 441

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCV---A 517
            M+    I  +    S +     RA     +++L +Q+  F    G  S++  G      
Sbjct: 442 KMRQASVIADQATFASLL-----RASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDV 496

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS-----SLIRDIMREKHV-- 570
           +   G  +   +   E+   N  ++  + S +A +GE E +      ++   ++   V  
Sbjct: 497 YAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSF 556

Query: 571 -GKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQHQSA 608
            G L  CS +  +    W  ++M  Q+   D  ++H ++
Sbjct: 557 LGVLSACSHSGLVEEGLWHFNSM-TQIYKLDPRREHYAS 594



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 147/315 (46%), Gaps = 34/315 (10%)

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           I + I+  G D D+   +  V  + K G+ + A Q+   M   +    + +ISGY   G 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +AR++FD   + ++V W  +I GY   N+  EA  LF +M+R G   D  T  ++LS 
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 158

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+         QV     K+G    +IV + L+D+Y         CK             
Sbjct: 159 CNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSY---------CK------------- 196

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                      R++ A  +F+ MP    +S+N+MI G S++G   +A++LF  M    L+
Sbjct: 197 ---------SNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLK 247

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK--CGYDALAL 424
             +F+ A+V+ A   +  + LG+Q+ + V       +  +S +L+DFY K     DA  L
Sbjct: 248 PTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKL 307

Query: 425 FNEM-RNTGVKPTII 438
           F+EM    GV   +I
Sbjct: 308 FDEMPEQDGVSYNVI 322



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 133/304 (43%), Gaps = 55/304 (18%)

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +     K G   D   ++  +  + K G  S A +LF ++   +T+  N MI+ Y   G 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           + +A+ +F  M  ++ ++W  +I G SQ     EA +LF  M +     D  +  +++S 
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 158

Query: 379 CANISSLELGE---QVFARVTIIGLDSDQIISTSLVDFYCK------------------- 416
           C   +  E+G    QV  ++  +G DS  I+  +LVD YCK                   
Sbjct: 159 C---NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDS 215

Query: 417 -------CGYD-------ALALFNEMRNTGVKPTIITFTAILSACDHCGL--VKEGQKWF 460
                   GY        A+ LF EM+N+G+KPT  TF A+L  C + GL  +  GQ+  
Sbjct: 216 VSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIH 273

Query: 461 DAM-----KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
             +      W   +       + ++D +++   + +A  L ++MP E D   ++ I+ G 
Sbjct: 274 SFVIKTNFVWNVFVS------NALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIISGY 326

Query: 516 VAHG 519
              G
Sbjct: 327 AWDG 330


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 165/520 (31%), Positives = 265/520 (50%), Gaps = 68/520 (13%)

Query: 96  NVMPQK-NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
            ++P++ N  S +  IS FA  +   L  G+      +V   DF  +L   L    G   
Sbjct: 23  KILPRRSNTSSLSRNISVFASYEQEELSPGRYSDEFNVVQASDFIEIL--QLCARNGAVM 80

Query: 155 DFNSANQVLNMMKEPDDFCLS-ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           +  + +     M+   D  LS  LI+ Y+ CG +  AR+VFD   + S V WN+MI  Y 
Sbjct: 81  EAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 140

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
            N  ++EAL +F +MR  G      T++SVLSAC +       K++H  + K  +  ++ 
Sbjct: 141 RNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLY 200

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
           V +ALLD Y+K                               CG I DA  +F +M +KS
Sbjct: 201 VGTALLDLYAK-------------------------------CGMINDAVQVFESMQDKS 229

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
            ++W+SM+ G  Q+ +  EAL L+    ++ L  ++F+L+SVI AC+N+++L  G+Q+ A
Sbjct: 230 SVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHA 289

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCG---------------------------------YD 420
            +   G  S+  +++S VD Y KCG                                  +
Sbjct: 290 VIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKE 349

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
            + LF +M+  G+ P  +TF+++LS C H GLV+EG+++F  M+  Y + P + HYSCMV
Sbjct: 350 VMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMV 409

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540
           D+  RAG L+EA  LI+ +PFE    +W S+L  C    +  L    A+++ EL+PENA 
Sbjct: 410 DILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAG 469

Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            ++ LS+I+A + +WE+ +  R ++R+  V K+ G SW D
Sbjct: 470 NHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWID 509



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 220/467 (47%), Gaps = 74/467 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C  + ++   K  H   ++   L   + ++N L+  Y +CG    A  +FD M  R
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRME-LQGDVTLSNVLINAYSKCGFVELARQVFDGMLER 127

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           +  SWN MI  + +   + ++L +F  M  +    ++F+ + ++S    A+  ALE  K+
Sbjct: 128 SLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSA-CGANCDALE-CKK 185

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H   +   LD +  +G++L++LY KCG  N A QV   M+                   
Sbjct: 186 LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQ------------------- 226

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                   D+++ T S M    ++GY+ +    EALLL+ + +R  + ++  TL+SV+ A
Sbjct: 227 --------DKSSVTWSSM----VAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 274

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CS+L  L  GKQ+H    K G   +V VAS+ +D Y+K G   ++  +FSE++  +  L 
Sbjct: 275 CSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELW 334

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
           NT+I+                               G +++  P E + LF  M +  + 
Sbjct: 335 NTIIS-------------------------------GFAKHARPKEVMILFEKMQQDGMH 363

Query: 367 MDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGYDALALF 425
            ++ + +S++S C +   +E G + F  + T  GL  + +  + +VD   + G  + A +
Sbjct: 364 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEA-Y 422

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
             +++   +PT   + ++L++C  C  ++  +    A K  + ++PE
Sbjct: 423 ELIKSIPFEPTASIWGSLLASCRVCKNLELAEV---AAKKLFELEPE 466



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 160/336 (47%), Gaps = 44/336 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C  +      K+LH   +K   L+  L +   LL +Y +CG   DA+ +F+ M
Sbjct: 167 ISSVLSACGANCDALECKKLHCLSMKTS-LDLNLYVGTALLDLYAKCGMINDAVQVFESM 225

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             ++  +W++M+ G+++  + E++L L+        ++N F+ + +I   A ++LAAL  
Sbjct: 226 QDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVIC--ACSNLAALIE 283

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GKQ+H+ I  +G   +  + SS V++Y KCG                             
Sbjct: 284 GKQMHAVIRKSGFGSNVFVASSAVDMYAKCGS---------------------------- 315

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
              + ++  +F    + +  +WN++ISG+  +    E ++LF KM+++G+  +  T +S+
Sbjct: 316 ---LRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 372

Query: 244 LSACSSLGFLEHGKQVHG-HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           LS C   G +E G++         G+  +V+  S ++D   + G+ S+A +L   +    
Sbjct: 373 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEP 432

Query: 303 TI-LLNTMITVYSSCGRIE----DAKHIFRTMPNKS 333
           T  +  +++     C  +E     AK +F   P  +
Sbjct: 433 TASIWGSLLASCRVCKNLELAEVAAKKLFELEPENA 468


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 167/580 (28%), Positives = 265/580 (45%), Gaps = 89/580 (15%)

Query: 40  TLPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
            +P+ N      LL  Y RCG   +A  LF+ +P RN  SWNAM+ G+ + G  +++ +L
Sbjct: 90  AMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 95  FNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
           F++MP ++D SW  +ISG+ K              H+                       
Sbjct: 150 FDMMPWRDDVSWLTMISGYIK------------RKHV----------------------- 174

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
               A ++ + M  P     +AL+SGY   G M  A  +F +    + V WN MI+GY  
Sbjct: 175 --REARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYAR 232

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVI 273
                 A  LF +M    VL   + +          G+L++G         K     D +
Sbjct: 233 AGSMGIAQRLFDEMPEKDVLSRTAIMR---------GYLQNGSVDAAWKVFKDMPHRDTV 283

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
             + ++D + +     DA KLFSE+   D I  N ++  Y   G ++ A   FR  PNK 
Sbjct: 284 AWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKD 343

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
            ISWN++I G    G    AL L   M +  L+ D+ +L+ VIS CA++ SL  G+ V  
Sbjct: 344 AISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHL 399

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCGY---------------------------------D 420
                G + D ++ +SL+  Y KCG                                  +
Sbjct: 400 WAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADE 459

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           AL +F+ M   G +P   TF +ILSAC H G + EG   F +M+  +++ P  +HYSCMV
Sbjct: 460 ALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMV 519

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540
           DL  R+G +++A +   ++P +     W ++   C +HG+  LG  +A  +++  P +  
Sbjct: 520 DLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGG 579

Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            Y  LS+I+A    W  ++ +R  M+E+ + K  GCSW +
Sbjct: 580 MYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIE 619



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 183/430 (42%), Gaps = 68/430 (15%)

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
           M E + F  + ++SG      + +AR+VFD     +SV W ++++GY       EA  LF
Sbjct: 60  MSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELF 119

Query: 226 HKM---------------RRNGVLEDASTLASVLSACSSLGFLE--HGKQVHGHACKVGV 268
           +++                RNG+++ A  L  ++     + +L    G     H  +   
Sbjct: 120 NRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARE 179

Query: 269 IDDVI------VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           + D +      V +ALL  Y + G    A  LF +++  + +  N MIT Y+  G +  A
Sbjct: 180 LFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIA 239

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM------------------NKLD 364
           + +F  MP K ++S  +++ G  QNGS   A  +F +M                  ++LD
Sbjct: 240 QRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLD 299

Query: 365 --LRM-------DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
             L++       D+ S  +++        ++     F R      + D I   +L+  Y 
Sbjct: 300 DALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAP----NKDAISWNTLISGYK 355

Query: 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
             G  AL+L +EM   G+KP   T + ++S C    LV  G      M   + I    EH
Sbjct: 356 DEG--ALSLLSEMIRGGLKPDQATLSVVISIC--ASLVSLG---CGKMVHLWAIKTGFEH 408

Query: 476 ----YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
                S ++ ++++ G ++EA  + E +  + D   W++++     HG      KV + M
Sbjct: 409 DALVMSSLISMYSKCGLISEASQVFE-LILQRDTVTWNAMIATYAYHGLADEALKVFDMM 467

Query: 532 IE--LDPENA 539
            +    P++A
Sbjct: 468 TKAGFRPDHA 477



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++  C +  S+  GK +HL  +K G  +  L + + L+ MY +CG  ++A  +F+ +
Sbjct: 378 LSVVISICASLVSLGCGKMVHLWAIKTGFEHDAL-VMSSLISMYSKCGLISEASQVFELI 436

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
            +R+  +WNAMI  +   G  +++L++F++M +
Sbjct: 437 LQRDTVTWNAMIATYAYHGLADEALKVFDMMTK 469


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 178/604 (29%), Positives = 287/604 (47%), Gaps = 99/604 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  GK++H+H ++ G     + + N L+ MY++CG+   A LLFD MPRR
Sbjct: 202 VLRTCGGIPDLARGKEVHVHVVRYG-YELDIDVVNALITMYVKCGDVKSARLLFDRMPRR 260

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAKADLAA-LEYGKQIH 128
           +  SWNAMI G+ + G   + L+LF  M   + D     L S  +  +L      G+ IH
Sbjct: 261 DIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIH 320

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           ++++  G   D  + +SL  +Y   G +  A ++ + M+  D                  
Sbjct: 321 AYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKD------------------ 362

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                         V W +MISGY  N    +A+  +  M ++ V  D  T+A+VLSAC+
Sbjct: 363 -------------IVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACA 409

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           +LG L+ G ++H  A K  +I  VIVA                               N 
Sbjct: 410 TLGDLDTGVELHKLAIKARLISYVIVA-------------------------------NN 438

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           +I +YS C  I+ A  IF  +P K++ISW S+I GL  N    EAL +F    K+ L+ +
Sbjct: 439 LINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPN 497

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA----- 423
             +L + ++ACA I +L  G+++ A V   G+  D  +  +L+D Y +CG    A     
Sbjct: 498 AITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFN 557

Query: 424 ---------------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                      LF+ M  + V+P  ITF ++L  C    +V++G
Sbjct: 558 SQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQG 617

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             +F  M+  Y + P ++HY+C+VDL  RAG L EA   I++MP   D  +W ++L  C 
Sbjct: 618 LMYFSKME-DYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACR 676

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H    LG   A+ + ELD ++   YI L +++A  G+W + + +R +M+E  +    GC
Sbjct: 677 IHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGC 736

Query: 577 SWAD 580
           SW +
Sbjct: 737 SWVE 740



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 178/380 (46%), Gaps = 48/380 (12%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEYGKQIHSHIL 132
           NA +  F++ G+   +  +F  M ++N FSWN+L+ G+AK    D A   Y    H  + 
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLY----HRMLW 188

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGYANCGKMN 188
           V G+  D      ++   G   D     +V    +    E D   ++ALI+ Y  CG + 
Sbjct: 189 VGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVK 248

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR +FDR      + WN+MISGY  N    E L LF  MR   V  D  TL SV+SAC 
Sbjct: 249 SARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACE 308

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            LG    G+ +H +    G   D+ V ++L   Y   G   +A KLFS ++         
Sbjct: 309 LLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRME--------- 359

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                                  K ++SW +MI G   N  P +A+D +  M++  ++ D
Sbjct: 360 ----------------------RKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPD 397

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY--CKCGYDALALFN 426
           + ++A+V+SACA +  L+ G ++        L S  I++ +L++ Y  CKC   AL +F+
Sbjct: 398 EITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFH 457

Query: 427 EMRNTGVKPTIITFTAILSA 446
            +     +  +I++T+I++ 
Sbjct: 458 NI----PRKNVISWTSIIAG 473


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 167/580 (28%), Positives = 265/580 (45%), Gaps = 89/580 (15%)

Query: 40  TLPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
            +P+ N      LL  Y RCG   +A  LF+ +P RN  SWNAM+ G+ + G  +++ +L
Sbjct: 90  AMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 95  FNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
           F++MP ++D SW  +ISG+ K              H+                       
Sbjct: 150 FDMMPWRDDVSWLTMISGYIK------------RKHV----------------------- 174

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
               A ++ + M  P     +AL+SGY   G M  A  +F +    + V WN MI+GY  
Sbjct: 175 --REARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYAR 232

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVI 273
                 A  LF +M    VL   + +          G+L++G         K     D +
Sbjct: 233 AGSMGIAQRLFDEMPEKDVLSRTAIMR---------GYLQNGSVDAAWKVFKDMPHRDTV 283

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
             + ++D + +     DA KLFSE+   D I  N ++  Y   G ++ A   FR  PNK 
Sbjct: 284 AWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKD 343

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
            ISWN++I G    G    AL L   M +  L+ D+ +L+ VIS CA++ SL  G+ V  
Sbjct: 344 AISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHL 399

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCGY---------------------------------D 420
                G + D ++ +SL+  Y KCG                                  +
Sbjct: 400 WAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADE 459

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           AL +F+ M   G +P   TF +ILSAC H G + EG   F +M+  +++ P  +HYSCMV
Sbjct: 460 ALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMV 519

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540
           DL  R+G +++A +   ++P +     W ++   C +HG+  LG  +A  +++  P +  
Sbjct: 520 DLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGG 579

Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            Y  LS+I+A    W  ++ +R  M+E+ + K  GCSW +
Sbjct: 580 MYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIE 619



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 183/430 (42%), Gaps = 68/430 (15%)

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
           M E + F  + ++SG      + +AR+VFD     +SV W ++++GY       EA  LF
Sbjct: 60  MSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELF 119

Query: 226 HKM---------------RRNGVLEDASTLASVLSACSSLGFLE--HGKQVHGHACKVGV 268
           +++                RNG+++ A  L  ++     + +L    G     H  +   
Sbjct: 120 NRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARE 179

Query: 269 IDDVI------VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           + D +      V +ALL  Y + G    A  LF +++  + +  N MIT Y+  G +  A
Sbjct: 180 LFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIA 239

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM------------------NKLD 364
           + +F  MP K ++S  +++ G  QNGS   A  +F +M                  ++LD
Sbjct: 240 QRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLD 299

Query: 365 --LRM-------DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
             L++       D+ S  +++        ++     F R      + D I   +L+  Y 
Sbjct: 300 DALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAP----NKDAISWNTLISGYK 355

Query: 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
             G  AL+L +EM   G+KP   T + ++S C    LV  G      M   + I    EH
Sbjct: 356 DEG--ALSLLSEMIRGGLKPDQATLSVVISIC--ASLVSLG---CGKMVHLWAIKTGFEH 408

Query: 476 ----YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
                S ++ ++++ G ++EA  + E +  + D   W++++     HG      KV + M
Sbjct: 409 DALVMSSLISMYSKCGLISEASQVFE-LILQRDTVTWNAMIATYAYHGLADEALKVFDMM 467

Query: 532 IE--LDPENA 539
            +    P++A
Sbjct: 468 TKAGFRPDHA 477



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++  C +  S+  GK +HL  +K G  +  L + + L+ MY +CG  ++A  +F+ +
Sbjct: 378 LSVVISICASLVSLGCGKMVHLWAIKTGFEHDAL-VMSSLISMYSKCGLISEASQVFELI 436

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
            +R+  +WNAMI  +   G  +++L++F++M +
Sbjct: 437 LQRDTVTWNAMIATYAYHGLADEALKVFDMMTK 469


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 189/646 (29%), Positives = 295/646 (45%), Gaps = 141/646 (21%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-- 101
           AN L+  Y +C     A  +FDEMP R+  SWNA+I  F   G  + + QL   M +   
Sbjct: 31  ANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMRRSTH 90

Query: 102 --NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG-------- 151
             +  ++  ++ G A   +  L+ G+Q+HS +L  GL  +   GS+L+++Y         
Sbjct: 91  AFDSRTFGSILKGVAY--VGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDG 148

Query: 152 -----------------------KCGDFNSANQVLNMMK----EPDDFCLSAL------- 177
                                  + GD + A  VL+ M+    E DD  +S L       
Sbjct: 149 YVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDNA 208

Query: 178 ----------------------------ISGYANCGKMNDARRVFDRTTDTSS-VMWNSM 208
                                       I+ Y+ C  + DA RVFD        V WNSM
Sbjct: 209 MFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDGAVLCRDLVTWNSM 268

Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
           +  Y+ + ++  A  +F  M+  G   DA T   ++ ACS       GK +HG   K G+
Sbjct: 269 LGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKTCGKCLHGLVIKRGL 328

Query: 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328
            + V V++AL+  Y +    +D C                          +EDA  IF +
Sbjct: 329 DNSVPVSNALISMYIRF---NDRC--------------------------MEDALRIFFS 359

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
           M  K   +WNS++ G  Q G   +AL LF  M  L + +D ++ ++VI +C+++++L+LG
Sbjct: 360 MDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLG 419

Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGYD---------------------------- 420
           +Q       +G D++  + +SL+  Y KCG                              
Sbjct: 420 QQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNAIVWNSIIFGYAQH 479

Query: 421 -----ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
                AL LF  M+   VK   ITF A+L+AC H GLV+EG  + ++M+  + I P  EH
Sbjct: 480 GQGNIALDLFYMMKERKVKLDHITFVAVLTACSHNGLVEEGCNFIESMESDFGIPPRQEH 539

Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           Y+C +DL+ RAG L +A  L+E MPFE D  +  ++L  C   GD  L  ++A+ ++EL+
Sbjct: 540 YACAIDLYGRAGHLKKATALVETMPFEPDAMVLKTLLGACRFCGDIELASQIAKILLELE 599

Query: 536 PENACAYIQLSSIFATSGEW-EKSSLIRDIMREKHVGKLPGCSWAD 580
           PE  C Y+ LS ++     W EK+S+ R +MRE+ V K+PG SW +
Sbjct: 600 PEEHCTYVILSEMYGRFKMWGEKASVTR-MMRERGVKKVPGWSWIE 644



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 161/327 (49%), Gaps = 42/327 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP--TDALLLFDEMP 68
           ++ +C+       GK LH   +K+G+ NS +P++N L+ MY+R  +    DAL +F  M 
Sbjct: 303 IVGACSVQEHKTCGKCLHGLVIKRGLDNS-VPVSNALISMYIRFNDRCMEDALRIFFSMD 361

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYG 124
            ++C +WN+++ G++++G  E +L+LF  M     + + ++++ +I   + +DLA L+ G
Sbjct: 362 LKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIR--SCSDLATLQLG 419

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +Q H   L  G D +S +GSSL+ +Y KC                               
Sbjct: 420 QQFHVLALKVGFDTNSYVGSSLIFMYSKC------------------------------- 448

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G + DAR+ F+ T+  ++++WNS+I GY  + +   AL LF+ M+   V  D  T  +VL
Sbjct: 449 GIIEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDHITFVAVL 508

Query: 245 SACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-D 302
           +ACS  G +E G   +       G+       +  +D Y + G    A  L   +    D
Sbjct: 509 TACSHNGLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKKATALVETMPFEPD 568

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTM 329
            ++L T++     CG IE A  I + +
Sbjct: 569 AMVLKTLLGACRFCGDIELASQIAKIL 595



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 113/507 (22%), Positives = 213/507 (42%), Gaps = 79/507 (15%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
           ++ N +I  + K      + Q+F+ MP ++  SWN +IS FA +    L+   Q+   + 
Sbjct: 29  YTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASS--GDLDTTWQLLGAMR 86

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMN 188
            +   FDS    S++      G      Q+ ++M +     + F  SAL+  YA CG+++
Sbjct: 87  RSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVD 146

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           D   VF    + + V WN++++ Y    +   A  +   M   GV  D  T++ +L+   
Sbjct: 147 DGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLD 206

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           +  F +   Q+H   CK+                 K G           L++++T+  N 
Sbjct: 207 NAMFYKLTMQLH---CKI----------------VKHG-----------LELFNTV-CNA 235

Query: 309 MITVYSSCGRIEDAKHIFR-TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            IT YS C  ++DA+ +F   +  + L++WNSM+     +     A  +F +M       
Sbjct: 236 TITAYSECCSLQDAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEP 295

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK----------- 416
           D ++   ++ AC+       G+ +   V   GLD+   +S +L+  Y +           
Sbjct: 296 DAYTYTGIVGACSVQEHKTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALR 355

Query: 417 -----------------CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                             GY       DAL LF +MR   ++    TF+A++ +C     
Sbjct: 356 IFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLAT 415

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           ++ GQ+ F  +  +   D      S ++ ++++ G + +A    E    +  + +W+SI+
Sbjct: 416 LQLGQQ-FHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNAI-VWNSII 473

Query: 513 RGCVAHGDKGLGRKV----AERMIELD 535
            G   HG   +   +     ER ++LD
Sbjct: 474 FGYAQHGQGNIALDLFYMMKERKVKLD 500



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 184/406 (45%), Gaps = 41/406 (10%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D +  + LI+ YA C ++N A +VFD      +V WN++IS + S+ +      L   MR
Sbjct: 27  DPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMR 86

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
           R+    D+ T  S+L   + +G L+ G+Q+H    KVG+ ++V   SALLD Y+K G   
Sbjct: 87  RSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVD 146

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-------------PNKSLIS 336
           D   +F  +   + +  NT++  YS  G  + A  +   M             P  +L+ 
Sbjct: 147 DGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLD 206

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
            N+M   L+        + L C + K  L +      + I+A +   SL+  E+VF    
Sbjct: 207 -NAMFYKLT--------MQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDGAV 257

Query: 397 IIGLDSDQIISTSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
           +     D +   S++  Y     + LA  +F +M+N G +P   T+T I+ AC     V+
Sbjct: 258 LC---RDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACS----VQ 310

Query: 455 EGQ---KWFDAMKWQYHIDPEIEHYSCMVDLFARAG--CLNEAVNLIEQMPFEADVGMWS 509
           E +   K    +  +  +D  +   + ++ ++ R    C+ +A+ +   M  + D   W+
Sbjct: 311 EHKTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLK-DCCTWN 369

Query: 510 SILRGCVAHGDKGLGRKVAERM----IELDPENACAYIQLSSIFAT 551
           SIL G V  G      ++  +M    IE+D     A I+  S  AT
Sbjct: 370 SILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLAT 415



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 345
           G+ +  C+      + D    N +IT Y+ C  +  A  +F  MP++  +SWN++I   +
Sbjct: 11  GLIATHCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFA 70

Query: 346 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
            +G       L   M +     D  +  S++   A +  L+LG+Q+ + +  +GL  +  
Sbjct: 71  SSGDLDTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVF 130

Query: 406 ISTSLVDFYCKCGY--DALALFNEM--RNTGVKPTIITFTAILSACD 448
             ++L+D Y KCG   D   +F  M  RN     T++   + +  CD
Sbjct: 131 SGSALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCD 177


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 174/611 (28%), Positives = 287/611 (46%), Gaps = 103/611 (16%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ +L+ +L +C    ++  GK +    + +      L +   L+ MY RC +P DA  +
Sbjct: 261 RVTFLS-ILDACVNPETLQHGKHVR-ESISETSFELDLFVGTALITMYARCRSPEDAAQV 318

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
           F  M + N  +W+A+I  F   GH  ++L+ F +M Q+    N  ++  L++GF     +
Sbjct: 319 FGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTP--S 376

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            LE   +IH  I  +GLD  + + ++LVN+YG+C             + PDD        
Sbjct: 377 GLEELSRIHLLITEHGLDDTTTMRNALVNVYGRC-------------ESPDD-------- 415

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                     AR VFD+    + + WNSMI  Y+      +AL LF  M++ G+  D   
Sbjct: 416 ----------ARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVN 465

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
             ++L AC+        K VH    + G+    +V ++L++ Y+K G          EL 
Sbjct: 466 FMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAG----------ELD 515

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           V + IL                     + M  + + +WN +I G + +G   EAL+ +  
Sbjct: 516 VAEVIL---------------------QEMDEQQITAWNVLINGYALHGRSREALEAYQK 554

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           +    + +DK +  SV++AC + +SL  G+ + +     GLDSD I+  +L + Y KCG 
Sbjct: 555 LQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGS 614

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                            + L L  +M   GVK   ITF ++LS+
Sbjct: 615 MENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSS 674

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL+ EG ++F ++     I+ + EHY C+VDL  RAG L EA   I +MP E  + 
Sbjct: 675 CSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIV 734

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
            W+S+L  C    D   G+  A +++ELDP N+ A + LS+I++  G+W+ ++ +R  M 
Sbjct: 735 TWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMA 794

Query: 567 EKHVGKLPGCS 577
            + V K+PG S
Sbjct: 795 SRRVKKVPGIS 805



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 140/565 (24%), Positives = 247/565 (43%), Gaps = 50/565 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC +   +  G  +H   L++G   +TL +A  LL MY +CG   DA  +F+EM
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTL-VATALLNMYGKCGTLLDAQSVFEEM 119

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
             +N  +WNAM+  +        SLQ            W + +  F +  L  ++     
Sbjct: 120 AEKNVVTWNAMLGVY--------SLQ---------GCCWKLAVELFTRMLLEGVKANVIT 162

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
             ++L + +D D++     ++    C        V       D F  +AL++ Y  CG +
Sbjct: 163 FLNVLNSVVDPDALRKGKFIH---SC--------VRESEHSLDVFVNTALVNTYTKCGSL 211

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
            DAR+VFD     S   WNSMIS Y  +    EA  +F +M++ G   D  T  S+L AC
Sbjct: 212 TDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDAC 271

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
            +   L+HGK V     +     D+ V +AL+  Y++   P DA ++F  +K  + I  +
Sbjct: 272 VNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWS 331

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL---- 363
            +IT ++  G   +A   FR M  + ++      + L    +    L+    ++ L    
Sbjct: 332 AIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEH 391

Query: 364 ---DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS-TSLVDFYCKCGY 419
              D    + +L +V   C +           AR     L+   +IS  S++  Y +C  
Sbjct: 392 GLDDTTTMRNALVNVYGRCESPDD--------ARTVFDQLELPNLISWNSMIGIYVQCER 443

Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
             DAL LF  M+  G++P  + F  IL AC   G     +K       +  +       +
Sbjct: 444 HDDALQLFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRKLVHQCVEESGLGGSPLVQT 502

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM-IELDP 536
            +V+++A+AG L+ A  ++++M  E  +  W+ ++ G   HG      +  +++ +E  P
Sbjct: 503 SLVNMYAKAGELDVAEVILQEMD-EQQITAWNVLINGYALHGRSREALEAYQKLQLEAIP 561

Query: 537 ENACAYIQLSSIFATSGEWEKSSLI 561
            +   +I + +   +S    +  +I
Sbjct: 562 VDKVTFISVLNACTSSTSLAEGKMI 586



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 190/457 (41%), Gaps = 92/457 (20%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           MY RCG+  DA+  F ++  RN  SWN MI  +      +++L LF+           ML
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHA----------ML 50

Query: 110 ISGFAK------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
           + G A                  L  G  +H+  L  G   ++++ ++L+N+YGKCG   
Sbjct: 51  LEGVAPNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCG--- 107

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY-ISNN 216
                                        + DA+ VF+   + + V WN+M+  Y +   
Sbjct: 108 ----------------------------TLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGC 139

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
               A+ LF +M   GV  +  T  +VL++      L  GK +H    +     DV V +
Sbjct: 140 CWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNT 199

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           AL++TY+K G  +DA K+F  +        N+MI+ YS   R  +A  IF+ M       
Sbjct: 200 ALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRM------- 252

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
                    Q G                 R D+ +  S++ AC N  +L+ G+ V   ++
Sbjct: 253 --------QQEGE----------------RCDRVTFLSILDACVNPETLQHGKHVRESIS 288

Query: 397 IIGLDSDQIISTSLVDFYCKC--GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
               + D  + T+L+  Y +C    DA  +F  M+ T     +IT++AI++A    G   
Sbjct: 289 ETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQT----NLITWSAIITAFADHGHCG 344

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
           E  ++F  M+ Q  I P    +  +++ F     L E
Sbjct: 345 EALRYFRMMQ-QEGILPNRVTFISLLNGFTTPSGLEE 380



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 179/422 (42%), Gaps = 68/422 (16%)

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y+ CG + DA   F +    + V WN MIS Y S     EAL LFH M   GV  +A TL
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            +VL++C S   L  G  VH  + + G   + +VA+ALL+ Y K G   DA  +F E+  
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAE 121

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            + +  N M+ VYS  G                   W               A++LF  M
Sbjct: 122 KNVVTWNAMLGVYSLQG-----------------CCWKL-------------AVELFTRM 151

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
               ++ +  +  +V+++  +  +L  G+ + + V       D  ++T+LV+ Y KCG  
Sbjct: 152 LLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSL 211

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A  +F  M+  G +   +TF +IL AC
Sbjct: 212 TDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDAC 271

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            +   ++ G+   +++  +   + ++   + ++ ++AR     +A  +  +M  + ++  
Sbjct: 272 VNPETLQHGKHVRESIS-ETSFELDLFVGTALITMYARCRSPEDAAQVFGRMK-QTNLIT 329

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDP--ENACAYIQLSSIFATSGEWEKSSLIRDIM 565
           WS+I+     HG  G   +   RM++ +    N   +I L + F T    E+ S I  ++
Sbjct: 330 WSAIITAFADHGHCGEALRYF-RMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLI 388

Query: 566 RE 567
            E
Sbjct: 389 TE 390


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 168/594 (28%), Positives = 280/594 (47%), Gaps = 101/594 (17%)

Query: 23  VGKQLHLH-FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           +G+   +H F ++  ++S + +A  ++ MY RCG    A  LF E+  R+  +W+A+I  
Sbjct: 4   LGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAA 63

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLI---SGFAKADLAALEYGKQIHSHILVNGLDF 138
           F++ G+ +++L LF  M Q      N +I   S  A A++++L+ GK +H   +   +D 
Sbjct: 64  FVQSGYPQEALSLFRSM-QNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDL 122

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D  +G++LV++Y                               A CG    A  +F+R  
Sbjct: 123 DISVGTALVSMY-------------------------------AKCGFFALALTLFNRMP 151

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
               V WN+MI+GY    E   AL +FHK++ + +  ++ T+  +L A + L  L+ G  
Sbjct: 152 CKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSC 211

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +HG   K G   +  V +AL+D Y+K                               CG 
Sbjct: 212 IHGKIIKCGFESECHVKTALIDMYAK-------------------------------CGS 240

Query: 319 IEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
           +  A+ +F RT   K  +SWN MI G   +G  I+A   FC M   +++ +  ++ +V+ 
Sbjct: 241 LSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLP 300

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------ 419
           A A++S+L  G  + A V  +G  S   +   L+D Y KCG+                  
Sbjct: 301 AVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVS 360

Query: 420 ---------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                           A+ LF+ M+++ ++    +F  +LSAC H GL+ EG+K FD+M 
Sbjct: 361 WNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMS 420

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
            Q+ ++P++EHY+CM DL  RAG  NE ++LI+ MP E D G+W ++L     H +  L 
Sbjct: 421 KQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLA 480

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
                 + +L+ +N   Y  LS+ +A SG W      R  + +  + K PG SW
Sbjct: 481 EFALHHLDKLEHKNLTHYAALSNTYARSGRWADVGNTRSKITKTGLRKSPGYSW 534



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 111/490 (22%), Positives = 197/490 (40%), Gaps = 105/490 (21%)

Query: 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
           + AL  G +IH      G+D D  + + ++ +Y +CG+ ++A Q+   +K  D    SA+
Sbjct: 1   MRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAI 60

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
           I+ +                            SGY       EAL LF  M+  G+  + 
Sbjct: 61  IAAFVQ--------------------------SGY-----PQEALSLFRSMQNEGLQANK 89

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
             L S L AC+ +  L+ GK +H  A K  V  D+ V +AL+  Y+K G  + A  LF+ 
Sbjct: 90  VILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNR 149

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           +   D +  N MI                                G +Q G P  AL++F
Sbjct: 150 MPCKDVVTWNAMIN-------------------------------GYAQIGEPFPALEMF 178

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             +   +L  +  ++  ++ A A ++ L+ G  +  ++   G +S+  + T+L+D Y KC
Sbjct: 179 HKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKC 238

Query: 418 G----------------------------------YDALALFNEMRNTGVKPTIITFTAI 443
           G                                   DA + F +M+   ++P I+T   +
Sbjct: 239 GSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTV 298

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L A  H   ++ G     A   +     +    +C++D++A+ G L+ +  +  +M    
Sbjct: 299 LPAVAHLSALRAGMT-LHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMK-NK 356

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERM----IELDPENACAYIQLSSIFATSGEWEKSS 559
           D   W+ +L G   HG      ++  RM    I LD   + ++I + S    +G   +  
Sbjct: 357 DTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLD---SFSFINVLSACRHAGLIGEGR 413

Query: 560 LIRDIMREKH 569
            I D M ++H
Sbjct: 414 KIFDSMSKQH 423



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  G  LH + ++ G  + T P+ N L+ MY +CG    +  +F EM  ++  SWN M+
Sbjct: 307 ALRAGMTLHAYVIRMGFQSKT-PVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVML 365

Query: 80  EGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
            G+   G    +++LF+ M       + FS+  ++S    A L   E  K   S    + 
Sbjct: 366 AGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIG-EGRKIFDSMSKQHQ 424

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK----EPDDFCLSALI 178
           L+ D    + + +L G+ G F   N+VL+++K    EPD     AL+
Sbjct: 425 LEPDLEHYACMADLLGRAGLF---NEVLDLIKSMPMEPDAGVWGALL 468


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 180/640 (28%), Positives = 293/640 (45%), Gaps = 141/640 (22%)

Query: 46  RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----K 101
           + L   ++ G   DAL LFD MPR+N  +W +++ G+ + G  E +L +F  M +     
Sbjct: 53  KRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAP 112

Query: 102 NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGS----------------- 144
           NDF+ N  +   A ADL AL  G+Q+HS  +  G   D+ +GS                 
Sbjct: 113 NDFACNAAL--VACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKE 170

Query: 145 --------------SLVNLYGKCGDFN-SANQVLNMMKE---PDDFCLS----------- 175
                         SL++ + + G+F  +A  ++ M+K+   P++  ++           
Sbjct: 171 VFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLG 230

Query: 176 ----------------------ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
                                 ALI  Y+  G+   A+ VFD     + V W SM+  YI
Sbjct: 231 QQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYI 290

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
            +    EAL +F  M   GV  +   L+ VL AC S+G    G+Q+H  A K  +I D+ 
Sbjct: 291 RDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIR 347

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
           V++ALL                               ++Y   G +E+ + +   + N  
Sbjct: 348 VSNALL-------------------------------SMYGRTGLVEELEAMLNKIENPD 376

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
           L+SW + I    QNG   +A+ L C M+      + ++ +SV+S+CA+++SL+ G Q   
Sbjct: 377 LVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHC 436

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCGY---------------------------------D 420
               +G DS+     +L++ Y KCG                                   
Sbjct: 437 LALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANK 496

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           AL +F++MR+ G+KP   TF  +L  C+H G+V+EG+ +F  M  QY   P   HY+CM+
Sbjct: 497 ALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMI 556

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540
           D+  R G  +EA+ +I  MPFE D  +W ++L  C  H +  +G+  A+R++EL   ++ 
Sbjct: 557 DMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSA 616

Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +Y+ +S+I+A  GEWE +  +R  M E  V K  GCSW +
Sbjct: 617 SYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIE 656



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 195/439 (44%), Gaps = 90/439 (20%)

Query: 23  VGKQLHLHFLKK-GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           +G+Q+H + +KK G+ + ++  +  L+  Y R G    A  +FD +  +N  SW +M++ 
Sbjct: 229 LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQL 288

Query: 82  FMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           +++ G  E++LQ+F  M  +    N+F+ ++++       L     G+Q+H   + + L 
Sbjct: 289 YIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL-----GRQLHCSAIKHDLI 343

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            D  + ++L+++YG+ G       +LN ++ PD      L+S                  
Sbjct: 344 TDIRVSNALLSMYGRTGLVEELEAMLNKIENPD------LVS------------------ 379

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                  W + IS    N    +A+ L  +M   G   +    +SVLS+C+ +  L+ G 
Sbjct: 380 -------WTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGM 432

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           Q H  A K+G   ++   +AL++ YSK                               CG
Sbjct: 433 QFHCLALKLGCDSEICTGNALINMYSK-------------------------------CG 461

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
           ++  A+  F  M    + SWNS+I G +Q+G   +AL++F  M    ++ D  +   V+ 
Sbjct: 462 QMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLM 521

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTS-------LVDFYCKCGY--DALALFNEM 428
            C +   +E GE +F R+ I     DQ   T        ++D   + G   +AL + N+M
Sbjct: 522 GCNHSGMVEEGE-LFFRLMI-----DQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDM 575

Query: 429 RNTGVKPTIITFTAILSAC 447
                +P  + +  +L++C
Sbjct: 576 ---PFEPDALIWKTLLASC 591



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 25/268 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L SC    S+  G Q H   LK G  +S +   N L+ MY +CG    A L FD M
Sbjct: 415 FSSVLSSCADVASLDQGMQFHCLALKLGC-DSEICTGNALINMYSKCGQMGSARLAFDVM 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
              +  SWN++I G  + G   K+L++F+ M     + +D ++  ++ G   + +  +E 
Sbjct: 474 HTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGM--VEE 531

Query: 124 GKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
           G ++   ++++   F       + ++++ G+ G F+ A +++N M  EPD      L++ 
Sbjct: 532 G-ELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLAS 590

Query: 181 YANCGKMNDARRVFDR---TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                 ++  +   DR    +D  S  +  M + Y  + E  +A  +  +M   GV +DA
Sbjct: 591 CKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDA 650

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACK 265
                    CS   ++E   +VH  A +
Sbjct: 651 --------GCS---WIEINNEVHTFASR 667


>gi|413934541|gb|AFW69092.1| hypothetical protein ZEAMMB73_188982 [Zea mays]
          Length = 630

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 169/579 (29%), Positives = 274/579 (47%), Gaps = 105/579 (18%)

Query: 43  IANRLLQMYMRCGNP-TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ- 100
           +AN LL  Y+R  +    AL  FD++PRR+  + ++++  F++ G   ++L     M   
Sbjct: 73  LANALLAFYVRLPDHLPHALRAFDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMASG 132

Query: 101 ----KNDFSWN---MLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
                +D + +   +  S  A A L  L  G  +H   +V G   D V+ S+LV++YG  
Sbjct: 133 GYGADDDVAPSAHALSASAKACAVLHDLRAGACVHGTTVVRGYGDDGVVLSALVDMYGHS 192

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           G    A +    M+ PD  C ++L                               IS ++
Sbjct: 193 GAPGDARKAFEEMRAPDGICYTSL-------------------------------ISAFV 221

Query: 214 SNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
            N+   EAL  F  M R +GV  D  T  S++SA  ++     G++ H      G+  +V
Sbjct: 222 RNDWFDEALRWFQAMLRTDGVWPDGCTFGSMMSALGNMKRARQGREAHAQVVTRGLCGNV 281

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
           IV S+ LD Y+K GM  DA K+F  +K                              PN 
Sbjct: 282 IVESSTLDMYAKCGMMVDARKVFDRMKA-----------------------------PNA 312

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
             +SW +++ G  Q G   + L LF  M+  +   D +SL +++ +CA +S+++LG+++ 
Sbjct: 313 --VSWCALLGGYCQTGKHEKVLSLFRQMHMQEQDDDWYSLGTLLRSCAGLSAVKLGKEIH 370

Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------------- 419
            R   +    D I+ ++LVD Y KCG                                  
Sbjct: 371 CRSMRMRGCGDVIVESALVDLYAKCGAVDYAYRVFKMSSVRNMITWNAMICGCAQNGHGE 430

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
            A++LFNEM   GVKP  I+F  +L AC H G+V+EG+ +F++M   Y I P IEHY+C+
Sbjct: 431 RAISLFNEMVRGGVKPDYISFIGVLFACSHTGMVEEGRNYFNSMSKDYGIPPGIEHYNCI 490

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VDL +R   L EA +L+ +  F  D  +W++IL  C  H +  +  +VA++M+EL+P+  
Sbjct: 491 VDLLSRVELLEEAEDLVNKSQFRDDSSLWAAILGACATHTNPDVAVRVAKKMMELEPQYH 550

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            +Y+ L +++ T G WE +  +R +M+ + V K PG SW
Sbjct: 551 LSYVLLENVYRTIGHWEDAVKVRKLMKSRKVKKEPGTSW 589



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 161/397 (40%), Gaps = 76/397 (19%)

Query: 170 DDFCLSALISGYANCG-KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           D +  +AL++ Y      +  A R FD       V  +S+++ ++       ALL    M
Sbjct: 70  DRYLANALLAFYVRLPDHLPHALRAFDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTM 129

Query: 229 RRNG------VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
              G      V   A  L++   AC+ L  L  G  VHG     G  DD +V SAL+D Y
Sbjct: 130 ASGGYGADDDVAPSAHALSASAKACAVLHDLRAGACVHGTTVVRGYGDDGVVLSALVDMY 189

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
              G P DA K F E++  D I   ++I+ +      ++A   F+ M             
Sbjct: 190 GHSGAPGDARKAFEEMRAPDGICYTSLISAFVRNDWFDEALRWFQAM------------- 236

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
            L  +G                +  D  +  S++SA  N+     G +  A+V   GL  
Sbjct: 237 -LRTDG----------------VWPDGCTFGSMMSALGNMKRARQGREAHAQVVTRGLCG 279

Query: 403 DQIISTSLVDFYCKCG--YDALALFNEMR---------------NTGVKPTII------- 438
           + I+ +S +D Y KCG   DA  +F+ M+                TG    ++       
Sbjct: 280 NVIVESSTLDMYAKCGMMVDARKVFDRMKAPNAVSWCALLGGYCQTGKHEKVLSLFRQMH 339

Query: 439 ---------TFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGC 488
                    +   +L +C     VK G++    +M+ +   D  +E  S +VDL+A+ G 
Sbjct: 340 MQEQDDDWYSLGTLLRSCAGLSAVKLGKEIHCRSMRMRGCGDVIVE--SALVDLYAKCGA 397

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCV--AHGDKGL 523
           ++ A  +  +M    ++  W++++ GC    HG++ +
Sbjct: 398 VDYAYRVF-KMSSVRNMITWNAMICGCAQNGHGERAI 433


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 175/605 (28%), Positives = 285/605 (47%), Gaps = 105/605 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDEMPR 69
           +LQ C T   +   +Q+H H LK   L   +     L    +   +  D AL +F+ + +
Sbjct: 27  ILQQCKTPKDL---QQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDK 83

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGK 125
               ++N MI G       + +L LF  M +K    + F+++ ++   ++  + AL  G+
Sbjct: 84  PESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSR--MKALREGE 141

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H+ IL +G                                + ++F  + LI  YANCG
Sbjct: 142 QVHALILKSGF-------------------------------KSNEFVENTLIQMYANCG 170

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++  AR VFD   + S V WNSM+SGY  N    E + LF K+    +  D  T+ SVL 
Sbjct: 171 QIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLM 230

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC  L  LE G+          +I + IV+  L     +R                +  L
Sbjct: 231 ACGRLANLEIGE----------LIGEYIVSKGL-----RR----------------NNTL 259

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
             ++I +Y+ CG+++ A+ +F  M  + +++W++MI G +Q     EAL+LF  M K ++
Sbjct: 260 TTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNV 319

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD----- 420
             ++ ++ SV+ +CA + + E G+ V   +    +     + T L+DFY KCGY      
Sbjct: 320 YPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVE 379

Query: 421 ----------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       AL  F+ M    VKP  +TF  +LSAC H  L
Sbjct: 380 VFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACL 439

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V +G+  F++M+  + I+P IEHY CMVD+  RAG L EA   I+ MPF  +  +W ++L
Sbjct: 440 VDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLL 499

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C AH +  +  K  E +  L+P ++  YI LS+ +A  G  E +  +R +++EK + K
Sbjct: 500 ASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKK 559

Query: 573 LPGCS 577
           +PGCS
Sbjct: 560 IPGCS 564



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 163/371 (43%), Gaps = 50/371 (13%)

Query: 1   MDTRIDY----LARLLQSCNTHHSIHVGKQLHLHFLKKGIL-NSTLPIANRLLQMYMRCG 55
           ++ RI++    +  +L +C    ++ +G+ +  + + KG+  N+TL  +  L+ MY +CG
Sbjct: 214 LELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTS--LIDMYAKCG 271

Query: 56  NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF--SWNMLISGF 113
               A  LFDEM +R+  +W+AMI G+ +    +++L LF+ M + N +     M+   +
Sbjct: 272 QVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLY 331

Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
           + A L A E GK +H +I    +     LG+ L++ Y KCG  + + +V   M   + F 
Sbjct: 332 SCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFT 391

Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
            +ALI G AN                               N E   AL  F  M  N V
Sbjct: 392 WTALIQGLAN-------------------------------NGEGKMALEFFSSMLENDV 420

Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SALLDTYSKRGMPSDAC 292
             +  T   VLSACS    ++ G+ +     +   I+  I     ++D   + G   +A 
Sbjct: 421 KPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAY 480

Query: 293 KLFSELKV-YDTILLNTMITVYSSCGRIEDA----KHIFRTMPNKS----LISWNSMIVG 343
           +    +    + ++  T++    +   IE A    +HI R  P  S    L+S    +VG
Sbjct: 481 QFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVG 540

Query: 344 LSQNGSPIEAL 354
             ++   + +L
Sbjct: 541 RVEDAIRVRSL 551


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 174/574 (30%), Positives = 281/574 (48%), Gaps = 98/574 (17%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L+  Y  CGN   A  +FD +  ++  SW  M+  + +    E SL LF  M    
Sbjct: 141 VGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG 200

Query: 103 DFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
               N  IS   K+   L A + GK +H   L    D D  +G +L+ LY K G+     
Sbjct: 201 YRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGE----- 255

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
                                     + +A++ F+       + W+ MIS Y  +++  E
Sbjct: 256 --------------------------IAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKE 289

Query: 221 ALLLFHKMRRNGVL-EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           AL LF +MR++ V+  +  T ASVL AC+SL  L  G Q+H    KVG+  +V V++AL+
Sbjct: 290 ALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALM 349

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
           D Y+K                               CG IE++  +F     K+ ++WN+
Sbjct: 350 DVYAK-------------------------------CGEIENSVKLFTGSTEKNEVAWNT 378

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           +IVG  Q G   +AL+LF NM  LD++  + + +SV+ A A++ +LE G Q+ +      
Sbjct: 379 IIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTM 438

Query: 400 LDSDQIISTSLVDFYCKCG---------------------------------YDALALFN 426
            + D +++ SL+D Y KCG                                  +AL LF+
Sbjct: 439 YNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFD 498

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
            M+ +  KP  +TF  +LSAC + GL+ +G+  F +M   Y I+P IEHY+CMV L  R+
Sbjct: 499 MMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRS 558

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G  +EAV LI ++PF+  V +W ++L  CV H +  LG+  A+R++E++P++   ++ LS
Sbjct: 559 GQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLS 618

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +++AT+  W+  + +R  M++K V K PG SW +
Sbjct: 619 NMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVE 652



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 144/551 (26%), Positives = 246/551 (44%), Gaps = 109/551 (19%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +LQ    +   + GK LH H LK G  +  L   N LL  Y+  G   DA  LFDEMP
Sbjct: 7   ANMLQQAIRNRDPNAGKSLHCHILKHGA-SLDLFAQNILLNTYVHFGFLEDASKLFDEMP 65

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISGFAKADLAALEY 123
             N  S+  + +GF +  H+ +  +   +       + N F +  L+      DLA  + 
Sbjct: 66  LTNTVSFVTLAQGFSR-SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLA--DT 122

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
              +H+++   G   D+ +G++L++ Y  CG+ ++A                        
Sbjct: 123 CLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAA------------------------ 158

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                  R+VFD       V W  M++ Y  N    ++LLLF +MR  G   +  T+++ 
Sbjct: 159 -------RQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAA 211

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L +C+ L   + GK VHG A KV    D+ V  ALL+ Y+K G  ++A + F E+   D 
Sbjct: 212 LKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDL 271

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           I  + MI+ Y                               +Q+    EAL+LFC M + 
Sbjct: 272 IPWSLMISRY-------------------------------AQSDKSKEALELFCRMRQS 300

Query: 364 DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
            + + + F+ ASV+ ACA++  L LG Q+ + V  +GLDS+  +S +L+D Y KC     
Sbjct: 301 SVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIEN 360

Query: 418 ----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                       G  AL LF+ M    ++PT +T++++L A   
Sbjct: 361 SVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASAS 420

Query: 450 CGLVKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
              ++ G++     +K  Y+ D  +   + ++D++A+ G +++A    ++M  + +V  W
Sbjct: 421 LVALEPGRQIHSLTIKTMYNKDSVVA--NSLIDMYAKCGRIDDARLTFDKMDKQDEVS-W 477

Query: 509 SSILRGCVAHG 519
           ++++ G   HG
Sbjct: 478 NALICGYSIHG 488



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 131/254 (51%), Gaps = 38/254 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +LQ+C +   +++G Q+H   LK G L+S + ++N L+ +Y +CG   +++ LF   
Sbjct: 310 FASVLQACASLVLLNLGNQIHSCVLKVG-LDSNVFVSNALMDVYAKCGEIENSVKLFTGS 368

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
             +N  +WN +I G+++LG  EK+L LF+ M     Q  + +++ ++   A A L ALE 
Sbjct: 369 TEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLR--ASASLVALEP 426

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIHS  +    + DSV+ +SL+++Y KCG  + A    + M + D+   +ALI GY+ 
Sbjct: 427 GRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYS- 485

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                                    I G        EAL LF  M+++    +  T   V
Sbjct: 486 -------------------------IHGL-----GMEALNLFDMMQQSNSKPNKLTFVGV 515

Query: 244 LSACSSLGFLEHGK 257
           LSACS+ G L+ G+
Sbjct: 516 LSACSNAGLLDKGR 529



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 167/400 (41%), Gaps = 67/400 (16%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D F  + L++ Y + G + DA ++FD    T++V + ++  G+  +++   A  L  ++ 
Sbjct: 37  DLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLF 96

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
           R G   +     ++L    S+   +    VH +  K+G   D  V +AL+D         
Sbjct: 97  REGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDA-------- 148

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
                                  YS CG ++ A+ +F  +  K ++SW  M+   ++N  
Sbjct: 149 -----------------------YSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYC 185

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
             ++L LFC M  +  R + F++++ + +C  + + ++G+ V      +  D D  +  +
Sbjct: 186 HEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIA 245

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTG-VKP 435
           L++ Y K G                                  +AL LF  MR +  V P
Sbjct: 246 LLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVP 305

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
              TF ++L AC    L+  G +   +   +  +D  +   + ++D++A+ G +  +V L
Sbjct: 306 NNFTFASVLQACASLVLLNLGNQ-IHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKL 364

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
                 + +V  W++I+ G V  GD      +   M+ LD
Sbjct: 365 FTGSTEKNEVA-WNTIIVGYVQLGDGEKALNLFSNMLGLD 403



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + Y + +L++  +  ++  G+Q+H     K + N    +AN L+ MY +CG   DA L
Sbjct: 407 TEVTY-SSVLRASASLVALEPGRQIH-SLTIKTMYNKDSVVANSLIDMYAKCGRIDDARL 464

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAA 120
            FD+M +++  SWNA+I G+   G   ++L LF++M Q N     +   G   A  +   
Sbjct: 465 TFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGL 524

Query: 121 LEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
           L+ G+     +L + G++      + +V L G+ G F+ A +++
Sbjct: 525 LDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLI 568


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 181/581 (31%), Positives = 267/581 (45%), Gaps = 104/581 (17%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S + +   LL MY + G  +DA  +FD MP+RN FSW+ M+ G+      E++  LF +M
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210

Query: 99  -----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGK 152
                 +K++F    ++S  +      L  G+Q+H  I+ +G LDF SV  +SLV +Y K
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVP--LGLLMGEQMHGLIVKDGLLDFVSV-ENSLVTMYAK 267

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
            G   +A  V    +E +    SA+I+GYA                              
Sbjct: 268 AGCMGAAFHVFESSRERNSITWSAMITGYAQ----------------------------- 298

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
             N E   A+ +F +M   G      T   VL+A S LG L  GKQ HG   K+G    +
Sbjct: 299 --NGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQI 356

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            V SAL+D Y+K G  +DA + F +L   D +L   M++                     
Sbjct: 357 YVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVS--------------------- 395

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
                     G  QNG   EAL L+  M+K  +   K ++AS + ACA I++LE G+Q+ 
Sbjct: 396 ----------GHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 445

Query: 393 ARVTIIGLDSDQIISTSLVDFYCK---------------------------------CGY 419
            ++   GL     + ++L   Y K                                 CG 
Sbjct: 446 TQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGN 505

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
            AL LF EM+  G  P  ITF  IL AC H GLV  G ++F  M   Y + P ++HY+CM
Sbjct: 506 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 565

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VD+ +RAG L EA + IE +  +    +W  +L  C +  D  +G    ER++EL   ++
Sbjct: 566 VDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDS 625

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            AYI LS+I+A+  +W     +R +MR + V K PGCSW +
Sbjct: 626 SAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVE 666



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 35/284 (12%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ VGKQ H   +K G     + + + L+ MY +CG   DA   FD++   +   W AM+
Sbjct: 336 ALAVGKQAHGLMVKLG-FEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMV 394

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDF-SWNMLISGF-AKADLAALEYGKQIHSHILVNGLD 137
            G ++ G  E++L L+  M ++    S + + SG  A A +AALE GKQ+H+ I+  GL 
Sbjct: 395 SGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLG 454

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
             + +GS+L  +Y KCG+      V                            RR+ DR 
Sbjct: 455 LGAPVGSALSTMYSKCGNLEDGMSVF---------------------------RRIPDRD 487

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                + WNS+ISG+  N     AL LF +M+  G + D  T  ++L ACS +G ++ G 
Sbjct: 488 V----IAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGW 543

Query: 258 QVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +      K  G+   +   + ++D  S+ GM  +A      + +
Sbjct: 544 EYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITI 587



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 38/275 (13%)

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
           ACK+ S   V +  +  +++ +Y   G + DA+ +F  MP ++  SW++M+ G +     
Sbjct: 143 ACKIPS--AVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCS 200

Query: 351 IEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
            EA DLF  M  +      +F   +V+SA +    L +GEQ+   +   GL     +  S
Sbjct: 201 EEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENS 260

Query: 410 LVDFYCKCGY---------------------------------DALALFNEMRNTGVKPT 436
           LV  Y K G                                   A+++F++M   G  PT
Sbjct: 261 LVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPT 320

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
             TF  +L+A    G +  G++    M  +   + +I   S +VD++A+ GC+ +A    
Sbjct: 321 EFTFVGVLNASSDLGALAVGKQAHGLMV-KLGFEVQIYVKSALVDMYAKCGCIADAKEGF 379

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           +Q+ +E D+ +W++++ G V +G+      +  RM
Sbjct: 380 DQL-YEVDIVLWTAMVSGHVQNGEHEEALTLYARM 413



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C    ++  GKQLH   +K G L    P+ + L  MY +CGN  D + +F  +
Sbjct: 425 IASGLRACAGIAALEPGKQLHTQIVKYG-LGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 483

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM 108
           P R+  +WN++I GF + G    +L LF  M  +     N+
Sbjct: 484 PDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNI 524


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 148/430 (34%), Positives = 225/430 (52%), Gaps = 37/430 (8%)

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA+ G+++ +  +F RT + S   W ++I G+       +AL  + +M   GV  +A T 
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +S+L  C     +E GK +H  A K+G   D+ V + LLD Y++ G    A +LF  +  
Sbjct: 132 SSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 187

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
              + L  M+T Y+  G ++ A+ +F  M  +  + WN MI G +QNG P EAL LF  M
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 247

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            K   + ++ ++ SV+SAC  + +LE G  V + +   G+  +  + T+LVD Y KCG  
Sbjct: 248 LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSL 307

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +AL LF  M   G+ PT ITF  ILSAC
Sbjct: 308 EDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSAC 367

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H G V EG   F+ MK +Y I+P+IEHY CMV+L  RAG + +A  L++ M  E D  +
Sbjct: 368 GHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVL 427

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L  C  HG   LG K+ E +++ +  N+  YI LS+I+A  G W+  + +R +M++
Sbjct: 428 WGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKD 487

Query: 568 KHVGKLPGCS 577
             V K PGCS
Sbjct: 488 SGVKKEPGCS 497



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 206/439 (46%), Gaps = 46/439 (10%)

Query: 26  QLHLHFLKKGILNSTLPIAN-RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           Q+H    + G+ +   PI N +L + Y   G    ++ LF      + F W A+I G   
Sbjct: 48  QIHAVLFRHGLDHH--PILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHAL 105

Query: 85  LGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDS 140
            G  E++L  +  M     + N F+++ ++       L  +E GK +HS  +  G D D 
Sbjct: 106 RGLHEQALNFYAQMLTQGVEPNAFTFSSILK------LCPIEPGKALHSQAVKLGFDSDL 159

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            + + L+++Y + GD  SA Q+ + M E     L+A+++ YA  G+++ AR +FD   + 
Sbjct: 160 YVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEER 219

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
             V WN MI GY  N    EAL+LF +M +     +  T+ SVLSAC  LG LE G+ VH
Sbjct: 220 DGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVH 279

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
            +    G+  +V V +AL+D YSK G   DA  +F ++   D +  N+MI  Y+      
Sbjct: 280 SYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYA------ 333

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
                               + G SQ     EAL LF +M ++ L     +   ++SAC 
Sbjct: 334 --------------------MHGFSQ-----EALQLFKSMCRMGLHPTNITFIGILSACG 368

Query: 381 NISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIIT 439
           +   +  G  +F ++    G++        +V+   + G+   A +  ++N  ++P  + 
Sbjct: 369 HSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQA-YELVKNMNIEPDPVL 427

Query: 440 FTAILSACDHCGLVKEGQK 458
           +  +L AC   G +  G+K
Sbjct: 428 WGTLLGACRLHGKIALGEK 446


>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 529

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 163/564 (28%), Positives = 267/564 (47%), Gaps = 99/564 (17%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISG 112
           G  + A  + D++   + ++WN +I G+++    E+++ ++N + +K     ++ ++   
Sbjct: 27  GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILVYNHVRKKGLKVDTYTLVFVI 86

Query: 113 FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 172
            A      +  G+QIH  I   G +F+ ++ ++L+NLYG             +  E    
Sbjct: 87  KACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYG-------------LFDE---- 129

Query: 173 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
                     +CG     +++FD       VMWN++I+ Y   N   +   + + M R+ 
Sbjct: 130 ----------DCG----LQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSN 175

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           V  +  T  S+LS CSSL  L  GK VHG+  K                           
Sbjct: 176 VKPNGVTAVSILSVCSSLRALREGKAVHGYVTK--------------------------- 208

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
                L  +D  + N +I VYS CG I DA  +F+ MP ++++SW S+I G S N  P E
Sbjct: 209 ----NLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNE 264

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL-DSDQIISTSLV 411
           AL  F  M   ++R D+ ++  V+  C+ + S ELGE +   V  IGL      I+ +L+
Sbjct: 265 ALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANALM 324

Query: 412 DFYCKCG---------------------------------YDALALFNEMRNTGVKPTII 438
           D + KCG                                   AL  F +M+  G KP  +
Sbjct: 325 DMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSL 384

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
            F ++LSAC H GLV EG + F +M+  YHI P +EHY CMVD+  RAG ++EA   ++ 
Sbjct: 385 VFLSLLSACSHAGLVDEGWRCFSSMEADYHISPWMEHYGCMVDILCRAGLVDEAFKFVQN 444

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MP + D+ +W ++L  C   G+  L  +V   + EL P+ +  Y+ LS++FA++ EW+  
Sbjct: 445 MPIKPDMIVWRTLLGACHTQGNISLANQVMNYLCELGPKKSEDYVLLSNLFASNAEWDNV 504

Query: 559 SLIRDIMREKHVGKL-PGCSWADG 581
             +R  M ++ V K  PGCS+ + 
Sbjct: 505 GEVRKEMGDRGVTKQDPGCSFIEA 528



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 207/489 (42%), Gaps = 86/489 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++++C     I  G+Q+H    K G     + I   LL +Y           +FDEM
Sbjct: 82  LVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVI-IQTALLNLYGLFDEDCGLQQIFDEM 140

Query: 68  PRRNCFSWNAMIEGFM----KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY 123
           P+R+   WNA+I  +         +E S  +     + N  +   ++S    + L AL  
Sbjct: 141 PQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVSILS--VCSSLRALRE 198

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK +H ++  N ++FD  + ++L+ +Y KCG    A QV  +M                 
Sbjct: 199 GKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMP---------------- 242

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                  R V   T         S+I+GY  NN   EAL  F +M    +  D  T+  V
Sbjct: 243 ------MRNVVSWT---------SLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGV 287

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +  CS L   E G+ +  +  K+G++ +   +A+AL+D ++K                  
Sbjct: 288 VCMCSKLRSFELGEWISQYVVKIGLLKESPAIANALMDMHAK------------------ 329

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                        CG I  A  IF  M  K+++SW  MI GL+ +G  + AL  FC M +
Sbjct: 330 -------------CGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQR 376

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST------SLVDFYCK 416
              + D     S++SAC++   ++ G + F+      +++D  IS        +VD  C+
Sbjct: 377 EGFKPDSLVFLSLLSACSHAGLVDEGWRCFS-----SMEADYHISPWMEHYGCMVDILCR 431

Query: 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI-EH 475
            G    A F  ++N  +KP +I +  +L AC   G +    +    M +   + P+  E 
Sbjct: 432 AGLVDEA-FKFVQNMPIKPDMIVWRTLLGACHTQGNISLANQ---VMNYLCELGPKKSED 487

Query: 476 YSCMVDLFA 484
           Y  + +LFA
Sbjct: 488 YVLLSNLFA 496



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 169/390 (43%), Gaps = 86/390 (22%)

Query: 175 SALISGYANC---GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
           S L+  +A+    G  + ARR+ D+     +  WN++I GY+  N+  EA+L+++ +R+ 
Sbjct: 14  SKLVVSFASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILVYNHVRKK 73

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           G+  D  TL  V+ AC     +  G+Q+HG   K+G   +VI+ +ALL+ Y         
Sbjct: 74  GLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYG-------- 125

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
             LF E                  CG     + IF  MP + L+ WN++I   +    P 
Sbjct: 126 --LFDE-----------------DCG----LQQIFDEMPQRDLVMWNALIAAYAHGNCPY 162

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           +  ++  +M + +++ +  +  S++S C+++ +L  G+ V   VT   ++ D  +  +L+
Sbjct: 163 KVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALI 222

Query: 412 DFYCKCGY---------------------------------DALALFNEMRNTGVKPTII 438
             Y KCG                                  +AL  F +M    ++P  I
Sbjct: 223 VVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEI 282

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKW--QYHI-------DPEIEHYSCMVDLFARAGCL 489
           T   ++  C          + F+  +W  QY +        P I   + ++D+ A+ G +
Sbjct: 283 TVLGVVCMCSKL-------RSFELGEWISQYVVKIGLLKESPAIA--NALMDMHAKCGNI 333

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
           N A  + + M  E  +  W+ +++G   HG
Sbjct: 334 NRACQIFDGME-EKTIVSWTIMIQGLAMHG 362


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 171/570 (30%), Positives = 273/570 (47%), Gaps = 100/570 (17%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           L+ MY++   PTDA  +FDEM  R+  S+N MI G++KL   E+S+++F  +   + F  
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF--LENLDQFKP 305

Query: 107 NML-ISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
           ++L +S   +A   L  L   K I++++L  G     VL S++ N+              
Sbjct: 306 DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGF----VLESTVRNI-------------- 347

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
                        LI  YA CG M  AR VF+      +V WNS+ISGYI + +  EA+ 
Sbjct: 348 -------------LIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMK 394

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           LF  M       D  T   ++S  + L  L+ GK +H +  K G+  D+ V++AL+D Y+
Sbjct: 395 LFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYA 454

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           K                               CG + D+  IF +M     ++WN++I  
Sbjct: 455 K-------------------------------CGEVGDSLKIFSSMGTGDTVTWNTVISA 483

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
             + G     L +   M K ++  D  +    +  CA++++  LG+++   +   G +S+
Sbjct: 484 CVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESE 543

Query: 404 QIISTSLVDFYCKCG---------------------------------YDALALFNEMRN 430
             I  +L++ Y KCG                                   AL  F +M  
Sbjct: 544 LQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEK 603

Query: 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
           +G+ P  + F AI+ AC H GLV EG   F+ MK  Y IDP IEHY+C+VDL +R+  ++
Sbjct: 604 SGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKIS 663

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
           +A   I+ MP + D  +W+S+LR C   GD     +V+ R+IEL+P++    I  S+ +A
Sbjct: 664 KAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYA 723

Query: 551 TSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
              +W+K SLIR  +++KH+ K PG SW +
Sbjct: 724 ALRKWDKVSLIRKSLKDKHITKNPGYSWIE 753



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 146/569 (25%), Positives = 250/569 (43%), Gaps = 112/569 (19%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFN-VMPQKNDFSWNMLISGFAKADL--AALE-YGKQIH 128
           F    +I+ +        SL +F  V P KN + WN +I  F+K  L   ALE YGK   
Sbjct: 40  FFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRE 99

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           S +  +   F SV+ +       + GD     Q+L+M  E D F  +AL+  Y+  G + 
Sbjct: 100 SKVSPDKYTFPSVIKACAGLFDAEMGDL-VYEQILDMGFESDLFVGNALVDMYSRMGLLT 158

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            AR+VFD       V WNS+ISGY S+    EAL ++H+++ + ++ D+ T++SVL A  
Sbjct: 159 RARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFG 218

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           +L  ++ G+ +HG A K GV   V+V + L+  Y K   P+DA ++F E+ V D++  NT
Sbjct: 219 NLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNT 278

Query: 309 MI-------------------------------TVYSSCGRIED---AKHIFRTMPNKSL 334
           MI                               +V  +CG + D   AK+I+  M     
Sbjct: 279 MICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGF 338

Query: 335 I------------------------SWNSM-----------IVGLSQNGSPIEALDLFCN 359
           +                         +NSM           I G  Q+G  +EA+ LF  
Sbjct: 339 VLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKM 398

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           M  ++ + D  +   +IS    ++ L+ G+ + +     G+  D  +S +L+D Y KCG 
Sbjct: 399 MMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGE 458

Query: 420 --DALALFN-------------------------------EMRNTGVKPTIITFTAILSA 446
             D+L +F+                               +MR + V P + TF   L  
Sbjct: 459 VGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C      + G++    +  ++  + E++  + +++++++ GCL  +  + E+M    DV 
Sbjct: 519 CASLAAKRLGKEIHCCL-LRFGYESELQIGNALIEMYSKCGCLENSSRVFERMS-RRDVV 576

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELD 535
            W+ ++    A+G  G G K  E   +++
Sbjct: 577 TWTGMI---YAYGMYGEGEKALETFADME 602



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 66/251 (26%)

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           ++  LS+ S+L  L   +++H     +G+      +  L+D YS    P+ +  +F    
Sbjct: 10  ISRALSSSSNLNEL---RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFR--- 63

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                                      R  P K++  WNS+I   S+NG   EAL+ +  
Sbjct: 64  ---------------------------RVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGK 96

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           + +  +  DK++  SVI ACA +   E+G+ V+ ++  +G +SD  +  +LVD Y + G 
Sbjct: 97  LRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGL 156

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                            +AL +++E++N+ + P   T +++L A
Sbjct: 157 LTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPA 216

Query: 447 CDHCGLVKEGQ 457
             +  +VK+GQ
Sbjct: 217 FGNLLVVKQGQ 227


>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 167/610 (27%), Positives = 286/610 (46%), Gaps = 113/610 (18%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           ++ +++  C    S  +G QLH   ++ G   S + I + ++ MY +C     A  +F+E
Sbjct: 71  FINKVVSFCAKFASYDLGIQLHSTIIRMG-FTSNVHICSAVVDMYAKCSEIQSAHEVFNE 129

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKADLAALEY 123
           MP RN  +WN++I G++            NVMP    +   S+++       + L    +
Sbjct: 130 MPERNDVTWNSLIFGYL------------NVMPTCAMRGVTSFSVSTCLVVCSQLEVRNF 177

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+H   L  G D +  +G++L+++Y K                               
Sbjct: 178 GAQVHGLSLKLGFDNNVFVGTALIDMYSK------------------------------- 206

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           C  ++D+ RVFD   D + V W +M++ Y  N +  EA++L  +M R G+  +  T  S+
Sbjct: 207 CDGVDDSWRVFDYMVDKNVVTWTAMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSL 266

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LS+ S   ++++ KQVH    + G+                       C L+        
Sbjct: 267 LSSFSGPKYMQYCKQVHCSIIRCGL----------------------ECNLY-------- 296

Query: 304 ILLNTMITVYSSC-GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            +  T++TVYS C   +ED   I   +     ISWN++I G S  G   +AL  FC M  
Sbjct: 297 -IAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIAGYSNLGLGEDALKCFCEMRH 355

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
            +++MD ++  S++ A     ++E G ++ A +   G  S   +   LV  Y +CG    
Sbjct: 356 ANIKMDFYTFTSLLGAIGAFLAIEEGREMHALIVKTGYASSVYVQNGLVSMYARCGAIDD 415

Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +A+ LF +MR T +KP   TF A+LSAC H
Sbjct: 416 SKRVFWLMEDHDVVSWNALLTGCAHHGFGNEAVELFEQMRKTKIKPNSTTFLAVLSACSH 475

Query: 450 CGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
            G V +G ++FD M+    ++P  +EHY+ +VD+F RAG L+EA  +I  MP +    ++
Sbjct: 476 VGSVDKGLEYFDFMRSDISLEPLRVEHYASVVDIFGRAGYLSEAEAIINCMPMDPGPSVY 535

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L  C+ HG++ +  + A +++EL P++   YI LS++ AT G W+ ++ +R +M ++
Sbjct: 536 KALLSACLVHGNREIAVRSARKLLELWPDDPATYILLSNMLATEGYWDDAADVRKLMCDR 595

Query: 569 HVGKLPGCSW 578
            V K PG SW
Sbjct: 596 GVRKNPGYSW 605



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 122/501 (24%), Positives = 218/501 (43%), Gaps = 114/501 (22%)

Query: 102 NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161
           N +  N ++S  AK   A+ + G Q+HS I+  G   +  + S++V++Y KC +  SA++
Sbjct: 68  NPYFINKVVSFCAK--FASYDLGIQLHSTIIRMGFTSNVHICSAVVDMYAKCSEIQSAHE 125

Query: 162 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221
           V N M E +D                               V WNS+I GY+ N   T A
Sbjct: 126 VFNEMPERND-------------------------------VTWNSLIFGYL-NVMPTCA 153

Query: 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281
           +         GV   + ++++ L  CS L     G QVHG + K+G  ++V V +AL+D 
Sbjct: 154 M--------RGV--TSFSVSTCLVVCSQLEVRNFGAQVHGLSLKLGFDNNVFVGTALIDM 203

Query: 282 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
           YSK                               C  ++D+  +F  M +K++++W +M+
Sbjct: 204 YSK-------------------------------CDGVDDSWRVFDYMVDKNVVTWTAMV 232

Query: 342 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 401
              +QN  P EA+ L   M +L ++ +  +  S++S+ +    ++  +QV   +   GL+
Sbjct: 233 TAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSSFSGPKYMQYCKQVHCSIIRCGLE 292

Query: 402 SDQIISTSLVDFYCKC----------------------------------GYDALALFNE 427
            +  I+ +LV  Y KC                                  G DAL  F E
Sbjct: 293 CNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIAGYSNLGLGEDALKCFCE 352

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           MR+  +K    TFT++L A      ++EG++   A+  +      +   + +V ++AR G
Sbjct: 353 MRHANIKMDFYTFTSLLGAIGAFLAIEEGRE-MHALIVKTGYASSVYVQNGLVSMYARCG 411

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM--IELDPENACAYIQL 545
            ++++  +   M  + DV  W+++L GC  HG      ++ E+M   ++ P N+  ++ +
Sbjct: 412 AIDDSKRVFWLME-DHDVVSWNALLTGCAHHGFGNEAVELFEQMRKTKIKP-NSTTFLAV 469

Query: 546 SSIFATSGEWEKSSLIRDIMR 566
            S  +  G  +K     D MR
Sbjct: 470 LSACSHVGSVDKGLEYFDFMR 490



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 48/225 (21%)

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283
           LF  + RNG   +   +  V+S C+     + G Q+H    ++G   +V + SA++D Y+
Sbjct: 56  LFAHLLRNGSFSNPYFINKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDMYA 115

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           K                               C  I+ A  +F  MP ++ ++WNS+I G
Sbjct: 116 K-------------------------------CSEIQSAHEVFNEMPERNDVTWNSLIFG 144

Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
              N  P       C M  +      FS+++ +  C+ +     G QV      +G D++
Sbjct: 145 Y-LNVMPT------CAMRGV----TSFSVSTCLVVCSQLEVRNFGAQVHGLSLKLGFDNN 193

Query: 404 QIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSA 446
             + T+L+D Y KC    D+  +F+ M    V   ++T+TA+++A
Sbjct: 194 VFVGTALIDMYSKCDGVDDSWRVFDYM----VDKNVVTWTAMVTA 234



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           DLF ++ +     + + +  V+S CA  +S +LG Q+ + +  +G  S+  I +++VD Y
Sbjct: 55  DLFAHLLRNGSFSNPYFINKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDMY 114

Query: 415 CKCG--YDALALFNEM 428
            KC     A  +FNEM
Sbjct: 115 AKCSEIQSAHEVFNEM 130


>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 166/511 (32%), Positives = 265/511 (51%), Gaps = 55/511 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL SC    S+   +++H   +K         I NRL+  Y +CG   DA  +FD+M
Sbjct: 22  FAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVF-IQNRLIDAYGKCGCFDDARKIFDQM 80

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEYGK 125
           P +N FSWNA++   +K G  ++  +LF  MP+ +  SWN LI+GFA+ D    AL Y  
Sbjct: 81  PEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFV 140

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP----DDFCLSALISGY 181
           ++H    V     +   GS L    G   D     Q+  +M +     D +  SALI  Y
Sbjct: 141 KMHRKGFVLN---EYTFGSGLSACAG-LKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIY 196

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           + CG ++ A+RVFD   + + V WNS+I+ Y  N    EAL +F +M  +G   D  TLA
Sbjct: 197 SKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLA 256

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVG---VIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           SV+SAC+SL   + G ++H  AC V    + DD+I+++AL+D Y+K G  ++A  +F  +
Sbjct: 257 SVVSACASLAAAKQGLEIH--ACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRM 314

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
            + + +   +M++ Y+    ++ A+ +F  M  ++++SWN++I G +QNG   EAL LF 
Sbjct: 315 PIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFR 374

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVD 412
            + +  +    ++  ++++ACAN++ L+LG Q  A V   G       +SD  +  +L+D
Sbjct: 375 MLKREAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALID 434

Query: 413 FYCKC---------------------------------GYDALALFNEMRNTGVKPTIIT 439
            Y KC                                 G +AL LF +M  +G KP  +T
Sbjct: 435 MYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHVT 494

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
               L AC H GLV+EG+K F +M  +Y ++
Sbjct: 495 MIGALCACSHAGLVQEGRKHFSSMTEEYGLE 525



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 169/366 (46%), Gaps = 38/366 (10%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D+S  A +L +C     L   +++H    K     +V + + L+D Y K G   DA K+F
Sbjct: 18  DSSPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIF 77

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
            ++   +    N +++     G +++   +F +MP     SWNS+I G +Q+    EAL+
Sbjct: 78  DQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALN 137

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
            F  M++    +++++  S +SACA +  L++G Q+   +       D  + ++L+D Y 
Sbjct: 138 YFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYS 197

Query: 416 KCGY---------------------------------DALALFNEMRNTGVKPTIITFTA 442
           KCG+                                 +AL +F  M  +G +P  +T  +
Sbjct: 198 KCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLAS 257

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           ++SAC      K+G +    +  +  +  ++   + +VD++A+ G +NEA  + ++MP  
Sbjct: 258 VVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIR 317

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS-SLI 561
            +V   +S++ G          R +  +MIE    N  ++  L + +  +GE E++  L 
Sbjct: 318 -NVVSETSMVSGYAKTASVKAARLLFTKMIE---RNVVSWNALIAGYTQNGENEEALRLF 373

Query: 562 RDIMRE 567
           R + RE
Sbjct: 374 RMLKRE 379



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 21/213 (9%)

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALAL 424
           +D    A ++ +C    SL    ++ AR+       +  I   L+D Y KCG   DA  +
Sbjct: 17  LDSSPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKI 76

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F++M     +  + ++ AI+S     G + EG + F +M      +P+   ++ ++  FA
Sbjct: 77  FDQM----PEKNVFSWNAIVSTLVKSGFLDEGARLFVSMP-----EPDQCSWNSLIAGFA 127

Query: 485 RAGCLNEAVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE----LDPE 537
           +     EA+N   +M    F  +   + S L  C    D  +G ++   M++    LD  
Sbjct: 128 QHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVY 187

Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
              A I    I++  G  + +  + D M E++V
Sbjct: 188 MGSALI---DIYSKCGFVDCAQRVFDGMMERNV 217


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 155/547 (28%), Positives = 276/547 (50%), Gaps = 70/547 (12%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIH 128
           R + F+  A++  +++ G    + + F+ M  ++  +WN ++SG  +   AA   G  + 
Sbjct: 101 RGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVG--LF 158

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGD--FNSANQVLNMMKEPDD--FCLSALISGYANC 184
             +++ G+  D+V  SS++ +    GD     A  +  +    DD  F  +A+I  Y   
Sbjct: 159 GRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKL 218

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G + + R+VFD  +    V WNS+ISG+    +   A+ +F  MR +GV  D  TL S+ 
Sbjct: 219 GMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLA 278

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           SA +  G +  G+ VH +  + G                                V D I
Sbjct: 279 SAIAQCGDICGGRSVHCYMVRRG------------------------------WDVGDII 308

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N ++ +Y+   +IE A+ +F +MP +  +SWN++I G  QNG   EA+ ++ +M K +
Sbjct: 309 AGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHE 368

Query: 365 -LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
            L+  + +  SV+ A +++ +L+ G ++ A     GL+ D  + T ++D Y KCG     
Sbjct: 369 GLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEA 428

Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                         AL+LF++M+  G+ P  +TF ++L+AC H 
Sbjct: 429 MLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHA 488

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV +G+ +F+ M+  Y I P  +HY+CMVD+F RAG L++A + I  MP + D  +W +
Sbjct: 489 GLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGA 548

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
           +L  C  HG+  +G+  ++ + ELDP+N   Y+ +S+++A  G+W+    +R ++R +++
Sbjct: 549 LLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNL 608

Query: 571 GKLPGCS 577
            K PG S
Sbjct: 609 QKTPGWS 615



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 116/237 (48%), Gaps = 34/237 (14%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H + +++G     +   N ++ MY +      A  +FD MP R+  SWN +I G+M
Sbjct: 290 GRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYM 349

Query: 84  KLGHKEKSLQLFNVMPQKNDFS--WNMLISGF-AKADLAALEYGKQIHSHILVNGLDFDS 140
           + G   +++ +++ M +           +S   A + L AL+ G ++H+  +  GL+ D 
Sbjct: 350 QNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDV 409

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            +G+ +++LY KC                               GK+++A  +F++T   
Sbjct: 410 YVGTCVIDLYAKC-------------------------------GKLDEAMLLFEQTPRR 438

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
           S+  WN++ISG   +    +AL LF +M++ G+  D  T  S+L+ACS  G ++ G+
Sbjct: 439 STGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGR 495



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 109/262 (41%), Gaps = 34/262 (12%)

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
           AC L   L   D      ++  Y   GR+ DA   F  M ++ + +WN+M+ GL +N   
Sbjct: 92  ACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARA 151

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
            EA+ LF  M    +  D  +++SV+  C  +    L   +       GLD +  +  ++
Sbjct: 152 AEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAM 211

Query: 411 VDFYCKCGY---------------------------------DALALFNEMRNTGVKPTI 437
           +D Y K G                                   A+ +F  MR++GV P +
Sbjct: 212 IDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDV 271

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           +T  ++ SA   CG +  G+     M  +     +I   + +VD++A+   +  A  + +
Sbjct: 272 LTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFD 331

Query: 498 QMPFEADVGMWSSILRGCVAHG 519
            MP   D   W++++ G + +G
Sbjct: 332 SMPVR-DAVSWNTLITGYMQNG 352



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  G ++H   +K G LN  + +   ++ +Y +CG   +A+LLF++ PRR+   WNA+I
Sbjct: 389 ALQQGTRMHALSIKTG-LNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVI 447

Query: 80  EGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHI-LVN 134
            G    GH  K+L LF+ M Q+    +  ++  L++  + A L  ++ G+   + +    
Sbjct: 448 SGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGL--VDQGRNFFNMMQTAY 505

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSA-NQVLNMMKEPDDFCLSALIS 179
           G+   +   + +V+++G+ G  + A + + NM  +PD     AL+ 
Sbjct: 506 GIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLG 551


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 156/529 (29%), Positives = 266/529 (50%), Gaps = 71/529 (13%)

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLG 143
           G+  ++ Q F +    N F+   L + F ++     +L  GKQ+H  ++V+G   D  + 
Sbjct: 27  GNLREAFQRFRL----NIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFIC 82

Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
           + L+++Y K GDF SA  V   M++ +    + LI+GY   G + +AR+VFD   D    
Sbjct: 83  NHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLT 142

Query: 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
            WN+MI+G I    + E L LF +M   G   D  TL SV S  + L  +  G+Q+HG+ 
Sbjct: 143 TWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYT 202

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
            K G+  D++V S+L   Y +                                G+++D +
Sbjct: 203 IKYGLELDLVVNSSLAHMYMRN-------------------------------GKLQDGE 231

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
            + R+MP ++L++WN++I+G +QNG P   L L+  M     R +K +  +V+S+C++++
Sbjct: 232 IVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLA 291

Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------ 419
               G+Q+ A    IG  S   + +SL+  Y KCG                         
Sbjct: 292 IRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMIS 351

Query: 420 ---------DALALFNEM-RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                    +A+ LFN M   T ++   + F  +L AC H GL  +G + FD M  +Y  
Sbjct: 352 AYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGF 411

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P ++HY+C+VDL  RAGCL++A  +I  MP + D+ +W ++L  C  H +  + ++V +
Sbjct: 412 KPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFK 471

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            ++++DP ++  Y+ L+++ A++  W   S +R  MR+K+V K  G SW
Sbjct: 472 EILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISW 520



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 178/410 (43%), Gaps = 80/410 (19%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM------------ 50
           T        +QSC T  S+  GKQLH   +  G  +S   I N L+ M            
Sbjct: 42  TNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSG-FSSDKFICNHLMSMYSKLGDFPSAVA 100

Query: 51  -------------------YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
                              Y+R G+  +A  +FDEMP R   +WNAMI G ++    E+ 
Sbjct: 101 VYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEG 160

Query: 92  LQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 147
           L LF  M       ++++   + SG   A L ++  G+QIH + +  GL+ D V+ SSL 
Sbjct: 161 LSLFREMHGLGFSPDEYTLGSVFSG--SAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLA 218

Query: 148 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
           ++Y +                                GK+ D   V       + V WN+
Sbjct: 219 HMYMR-------------------------------NGKLQDGEIVIRSMPVRNLVAWNT 247

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           +I G   N      L L+  M+ +G   +  T  +VLS+CS L     G+Q+H  A K+G
Sbjct: 248 LIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIG 307

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
               V V S+L+  YSK G   DA K FSE +  D ++ ++MI+ Y   G+ ++A  +F 
Sbjct: 308 ASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFN 367

Query: 328 TMPNKSLISWN-----SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
           TM  ++ +  N     +++   S +G   + L+LF      D+ ++K+  
Sbjct: 368 TMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELF------DMMVEKYGF 411


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 168/611 (27%), Positives = 307/611 (50%), Gaps = 83/611 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMP 68
           LL+SC +   +   KQ+  H    G L       N+L+   M    G+   A  +F+ + 
Sbjct: 14  LLKSCKSMSQL---KQIQAHIFCVG-LQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIH 69

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYG 124
             + F +N MI+ F+K G    ++ LF  + +     +++++  ++ G     +  +  G
Sbjct: 70  DPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGC--IGEVREG 127

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +++H+ ++  GL+FD  + +S +++Y + G                      L+ G+   
Sbjct: 128 EKVHAFVVKTGLEFDPYVCNSFMDMYAELG----------------------LVEGFT-- 163

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASV 243
                  +VF+   D  +V WN MISGY+      EA+ ++ +M   +    + +T+ S 
Sbjct: 164 -------QVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVST 216

Query: 244 LSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           LSAC+ L  LE GK++H + A ++ +    I+ +ALLD Y K G  S A ++F  + V +
Sbjct: 217 LSACAVLRNLELGKEIHDYIASELDLT--TIMGNALLDMYCKCGHVSVAREIFDAMTVKN 274

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                +M+T Y  CG+++ A+++F   P++ ++ W +MI G  Q     E + LF  M  
Sbjct: 275 VNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQI 334

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
             ++ DKF + ++++ CA   +LE G+ +   +    +  D ++ T+L++ Y KCG    
Sbjct: 335 RGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEK 394

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +AL LF  M+  G+KP  ITF A+LSAC H
Sbjct: 395 SFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSH 454

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD---VG 506
            GLV+EG+K F +M   YHI+P +EHY C +DL  RAG L EA  L++++P + +   V 
Sbjct: 455 AGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVP 514

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           ++ ++L  C  +G+  +G ++A  + ++   ++  +  L+SI+A++  WE    +R+ M+
Sbjct: 515 LYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNKMK 574

Query: 567 EKHVGKLPGCS 577
           +  + K+PG S
Sbjct: 575 DLGIKKVPGYS 585


>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
 gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
          Length = 623

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 168/577 (29%), Positives = 273/577 (47%), Gaps = 105/577 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C+    + +GK++H     KG L + +   N LL MY  C +  +A L+F+ M  R
Sbjct: 109 LLGACSVTGDLSLGKKIHERVRAKG-LETDIITGNALLNMYTTCDSLDEARLVFERMVFR 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN---MLISGF-AKADLAALEYGKQ 126
           +  SW  +I  +   G+  ++LQL+  M Q  +FS      LIS   A A L  L  GK 
Sbjct: 168 DVVSWTIIISAYAHAGYPLEALQLYRRMEQ--EFSRPDAVTLISVLEACASLRTLVEGKT 225

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  I+ +G++ D  +G+                               A++S Y  C  
Sbjct: 226 IHERIVASGVETDVFVGT-------------------------------AVVSFYGKCEA 254

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           ++DAR+VFDR  D   V WN+MI  Y  N+ + +A  L+ +M  N +  +  TL ++L +
Sbjct: 255 VDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDS 314

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           CSS   +E G  +H  A   G +                                 T ++
Sbjct: 315 CSSTCKMERGSSLHREAAARGYLSH-------------------------------TSVV 343

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
           N +I +Y+ CG +E+A  +F    N++  +I+WN+MIV  +Q    +EAL ++  MN+  
Sbjct: 344 NALINMYAKCGSLENATRVFIEATNRTTNVITWNTMIVANAQEDLNLEALQIYHRMNQEG 403

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           ++    +  +V++ CAN      G +V +R    G  SD ++  SL+  Y  CG      
Sbjct: 404 IKASDVTYGTVLAVCANFGDFTTGREVHSRSLATGCCSD-VVQNSLICLYGGCGNLEAAQ 462

Query: 419 --YDALA-------------------------LFNEMRNTGVKPTIITFTAILSACDHCG 451
             ++++A                         LF  M   GV P I+TFT++L AC H G
Sbjct: 463 TAFESVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAG 522

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           L  EG  +F +M+  +H++P  EHY CMV+L A++G + +A + +  MP + D   W S+
Sbjct: 523 LADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSL 582

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
           L  C  H DK  G   A+++++ +P N+ AY+ L +I
Sbjct: 583 LGACEVHTDKEYGALAAKQLLDAEPRNSAAYVLLYNI 619



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 133/562 (23%), Positives = 226/562 (40%), Gaps = 107/562 (19%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ID    LL+      S+  G+++H   +  G+   T  + N L+QMY RCG+  DA   F
Sbjct: 2   IDTYEALLKQYGNSKSLADGRRVHSQMISNGLDGDTY-LGNLLVQMYGRCGSLDDARAAF 60

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAA 120
             + +RN FSW  +I   ++ G   + L+L   M     + N  ++  L+   A +    
Sbjct: 61  RGIHQRNVFSWTILISLLVQNGEASEGLELLKFMDLEGTEANKITFISLLG--ACSVTGD 118

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
           L  GK+IH  +   GL+ D + G++L+N+Y  C   + A  V   M   D    + +IS 
Sbjct: 119 LSLGKKIHERVRAKGLETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIISA 178

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           YA+ G                                  EAL L+ +M +     DA TL
Sbjct: 179 YAHAGY-------------------------------PLEALQLYRRMEQEFSRPDAVTL 207

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SVL AC+SL  L  GK +H      GV  DV V +A++  Y K     DA ++F     
Sbjct: 208 ISVLEACASLRTLVEGKTIHERIVASGVETDVFVGTAVVSFYGKCEAVDDARQVFD---- 263

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
                            RI D          K ++ WN+MI   +QN    +A  L+  M
Sbjct: 264 -----------------RIMD----------KDIVCWNAMIGAYAQNHCEEKAFALYLEM 296

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
            +  +R +  +L +++ +C++   +E G  +       G  S   +  +L++ Y KCG  
Sbjct: 297 VENQMRPNDVTLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCGSL 356

Query: 419 ---------------------------------YDALALFNEMRNTGVKPTIITFTAILS 445
                                             +AL +++ M   G+K + +T+  +L+
Sbjct: 357 ENATRVFIEATNRTTNVITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLA 416

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
            C + G    G++              +++   ++ L+   G L  A    E +  + +V
Sbjct: 417 VCANFGDFTTGREVHSRSLATGCCSDVVQN--SLICLYGGCGNLEAAQTAFESVASK-NV 473

Query: 506 GMWSSILRGCVAHGDKGLGRKV 527
             WSSI+     +G++   R +
Sbjct: 474 VSWSSIVAAYARNGEEDRARNL 495


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 160/553 (28%), Positives = 278/553 (50%), Gaps = 82/553 (14%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIH 128
           R + F+  +++  +++ G   ++ ++F+ M +++  +WN ++SG  +   AA   G  + 
Sbjct: 100 RPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVG--LF 157

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK---------EPDDFCLSALIS 179
             ++  G+  D+V  SS++ +    GD     QVL ++          + + F  +ALI 
Sbjct: 158 GRMVGEGVAGDTVTVSSVLPMCVLLGD-----QVLALVMHVYAVKHGLDKELFVCNALID 212

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
            Y   G + +A+ VF        V WNS+ISG     +   AL +F  MR +GV  D  T
Sbjct: 213 VYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLT 272

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           L S+ SA +  G     K +H +  + G  +DD+I  +A++D                  
Sbjct: 273 LVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVD------------------ 314

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                        +Y+    IE A+ +F +MP +  +SWN++I G  QNG   EA++ + 
Sbjct: 315 -------------MYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYG 361

Query: 359 NMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
           +M K + L+  + +  SV+ A +++ +L+ G ++ A    IGL+ D  + T L+D Y KC
Sbjct: 362 HMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKC 421

Query: 418 GY---------------------------------DALALFNEMRNTGVKPTIITFTAIL 444
           G                                  +AL LF+ M+  G+KP  +TF ++L
Sbjct: 422 GKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLL 481

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           +AC H GLV +G+ +FD M+  Y I P  +HY+CM D+  RAG L+EA N I+ MP + D
Sbjct: 482 AACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPD 541

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564
             +W ++L  C  HG+  +G+  ++ + ELDPEN   Y+ +S+++A  G+W+    +R +
Sbjct: 542 SAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSL 601

Query: 565 MREKHVGKLPGCS 577
           +R +++ K PG S
Sbjct: 602 VRRQNLQKTPGWS 614



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 34/236 (14%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K LH + +++G     +   N ++ MY +  N   A  +FD MP ++  SWN +I G+M+
Sbjct: 290 KSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQ 349

Query: 85  LGHKEKSLQLFNVMPQKNDFS--WNMLISGF-AKADLAALEYGKQIHSHILVNGLDFDSV 141
            G   ++++ +  M +           +S   A + L AL+ G ++H+  +  GL+ D  
Sbjct: 350 NGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVY 409

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           +G+ L++LY KC                               GK+ +A  +F++    S
Sbjct: 410 VGTCLIDLYAKC-------------------------------GKLAEAMLLFEKMPRRS 438

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
           +  WN++ISG   +    EAL LF +M++ G+  D  T  S+L+ACS  G ++ G+
Sbjct: 439 TGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGR 494



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 126/306 (41%), Gaps = 56/306 (18%)

Query: 285 RGMPSDA-------CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           R  PS+A       C L   L         +++  Y   GRI +A  +F  M  + + +W
Sbjct: 78  RAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAW 137

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
           N+M+ GL +N    EA+ LF  M    +  D  +++SV+  C     + LG+QV A V  
Sbjct: 138 NAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMC-----VLLGDQVLALVMH 192

Query: 398 I-----GLDSDQIISTSLVDFYCKCGY--------------------------------- 419
           +     GLD +  +  +L+D Y K G                                  
Sbjct: 193 VYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTA 252

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSC 478
            AL +F  MR +GV P ++T  ++ SA    G  +  +      M+  + +D +I   + 
Sbjct: 253 AALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVD-DIIAGNA 311

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
           +VD++A+   +  A  + + MP +  V  W++++ G +     GL  +  ER   +    
Sbjct: 312 IVDMYAKLSNIEAAQRMFDSMPVQDSVS-WNTLITGYM---QNGLANEAVERYGHMQKHE 367

Query: 539 ACAYIQ 544
               IQ
Sbjct: 368 GLKAIQ 373



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 15/168 (8%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  G ++H   +K G LN  + +   L+ +Y +CG   +A+LLF++MPRR+   WNA+I
Sbjct: 388 ALQQGMRMHALSIKIG-LNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAII 446

Query: 80  EGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
            G    GH  ++L LF+ M Q+    +  ++  L++  + A L       Q  S   V  
Sbjct: 447 SGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLV-----DQGRSFFDVMQ 501

Query: 136 LDFDSVLGSS----LVNLYGKCGDFNSA-NQVLNMMKEPDDFCLSALI 178
           + +D V  +     + ++ G+ G  + A N + NM  +PD     AL+
Sbjct: 502 VTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALL 549


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 196/704 (27%), Positives = 310/704 (44%), Gaps = 166/704 (23%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
            +L++    H + +GKQ+H H  K G    S++ +AN L+ MY +CG+ T A  +FD++P 
Sbjct: 336  VLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPD 395

Query: 70   RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEYGKQ 126
            R+  SWN+MI    +    E SL LF +M  +N    +  +   A A       +  GKQ
Sbjct: 396  RDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQ 455

Query: 127  IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
            +H++ L NG                   D  +             +  +AL++ YA  G+
Sbjct: 456  VHAYTLRNG-------------------DLRT-------------YTNNALVTMYARLGR 483

Query: 187  MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            +NDA+ +F        V WN++IS    N+   EAL+  + M  +GV  D  TLASVL A
Sbjct: 484  VNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPA 543

Query: 247  CSSLGFLEHGKQVHGHACKVG---------------------------VIDDVI-----V 274
            CS L  L  G+++H +A + G                           V D V+     V
Sbjct: 544  CSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAV 603

Query: 275  ASALLDTYSKRGMPSDACKLFSEL-----------------------KVY---------- 301
             +ALL  Y++      A +LF E+                       KV+          
Sbjct: 604  WNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYI 663

Query: 302  -------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                   D  + N ++ +YS  GR+E +K IF  M  + ++SWN+MI G    G   +AL
Sbjct: 664  VKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDAL 723

Query: 355  DLFCNMNK------------------LDLRMDKFSLASVISACANISSLELGEQVFARVT 396
            +L   M +                  +  + +  +L +V+  CA +++L  G+++ A   
Sbjct: 724  NLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAV 783

Query: 397  IIGLDSDQIISTSLVDFYCKCG---------------------------------YDALA 423
               L  D  + ++LVD Y KCG                                  +AL 
Sbjct: 784  KQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALE 843

Query: 424  LFNEMRNTG------VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
            LF  M   G      ++P  +T+ AI +AC H G+V EG   F  MK  + ++P  +HY+
Sbjct: 844  LFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYA 903

Query: 478  CMVDLFARAGCLNEAVNLIEQMPFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536
            C+VDL  R+G + EA  LI  MP   + V  WSS+L  C  H     G   A+ +  L+P
Sbjct: 904  CLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEP 963

Query: 537  ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
              A  Y+ +S+I++++G W+++  +R  M+E  V K PGCSW +
Sbjct: 964  NVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIE 1007



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/531 (23%), Positives = 243/531 (45%), Gaps = 73/531 (13%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            LA +L +C+    + +G+++H + L+ G L     +   L+ MY  C  P    L+FD +
Sbjct: 537  LASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGV 596

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY---- 123
             RR    WNA++ G+ +    +++L+LF  M  +++F  N   + FA    A +      
Sbjct: 597  VRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNA--TTFASVLPACVRCKVFS 654

Query: 124  -GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
              + IH +I+  G   D  + ++L+++Y + G    +  +   M + D    + +I+G  
Sbjct: 655  DKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCI 714

Query: 183  NCGKMNDA--------RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
             CG+ +DA        RR  +  +DT           ++   +D          + N V 
Sbjct: 715  VCGRYDDALNLLHEMQRRQGEDGSDT-----------FVDYEDDGGV-----PFKPNSV- 757

Query: 235  EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
                TL +VL  C++L  L  GK++H +A K  +  DV V SAL+D Y+K G  + A ++
Sbjct: 758  ----TLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRV 813

Query: 295  FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
            F ++ + + I  N +I  Y   G+ E+A  +FR M               +  GS     
Sbjct: 814  FDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIM--------------TAGGGS----- 854

Query: 355  DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDF 413
                  N+  +R ++ +  ++ +AC++   ++ G  +F  +    G++        LVD 
Sbjct: 855  ------NREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDL 908

Query: 414  YCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
              + G   +A  L N M +   K  +  ++++L AC     V+ G+    A K  + ++P
Sbjct: 909  LGRSGRVKEAYELINTMPSNLNK--VDAWSSLLGACRIHQSVEFGEI---AAKHLFVLEP 963

Query: 472  EI-EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
             +  HY  M ++++ AG  ++A+ + ++M    ++G+        + HGD+
Sbjct: 964  NVASHYVLMSNIYSSAGLWDQALGVRKKM---KEMGVRKEPGCSWIEHGDE 1011



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 113/292 (38%), Gaps = 64/292 (21%)

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           S   W  ++     ++   +A+  +  M       D     +VL A +++  L  GKQ+H
Sbjct: 294 SPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIH 353

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
            H  K G      VA A                             N+++ +Y  CG + 
Sbjct: 354 AHVFKFGHAPPSSVAVA-----------------------------NSLVNMYGKCGDLT 384

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
            A+ +F  +P++  +SWNSMI  L +      +L LF  M   ++    F+L SV  AC+
Sbjct: 385 AARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACS 444

Query: 381 NI-SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNE---------- 427
           ++   + LG+QV A  T+   D     + +LV  Y + G   DA ALF            
Sbjct: 445 HVRGGVRLGKQVHA-YTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWN 503

Query: 428 ---------------------MRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                M   GV+P  +T  ++L AC     ++ G++
Sbjct: 504 TVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGRE 555



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 40/202 (19%)

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           +S   W  ++   + + S  +A+  +  M       D F+  +V+ A A +  L LG+Q+
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQI 352

Query: 392 FARVTIIG--LDSDQIISTSLVDFYCKCG--------YD--------------------- 420
            A V   G    S   ++ SLV+ Y KCG        +D                     
Sbjct: 353 HAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFE 412

Query: 421 ----ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
               +L LF  M +  V PT  T  ++  AC H   V+ G +    +      + ++  Y
Sbjct: 413 EWELSLHLFRLMLSENVDPTSFTLVSVAHACSH---VRGGVRLGKQVHAYTLRNGDLRTY 469

Query: 477 S--CMVDLFARAGCLNEAVNLI 496
           +   +V ++AR G +N+A  L 
Sbjct: 470 TNNALVTMYARLGRVNDAKALF 491


>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 165/571 (28%), Positives = 271/571 (47%), Gaps = 98/571 (17%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQK 101
           + + +L   ++ G+   A   F +M  ++   WN MI GFM+ G   +   LF +++  K
Sbjct: 192 LGSSILNFLVKTGDIMCAQFFFHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNK 251

Query: 102 NDFSWNMLISGFAK-ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
            + S   +IS      ++  L +GK +H  +L  G+  D+ + ++L+++Y K GD     
Sbjct: 252 IEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGD----- 306

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
                                     +  AR +F+     + V WN MISGY+ N    E
Sbjct: 307 --------------------------VESARWIFENMPSRNLVSWNVMISGYVQNGLLVE 340

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
            L LF K+  + V  D+ T+ S++  CS    L+ GK +HG   + G+  ++++ +A++D
Sbjct: 341 TLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVD 400

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K                               CG +  A  +F  M NK++ISW +M
Sbjct: 401 LYAK-------------------------------CGSLAYASSVFERMKNKNVISWTAM 429

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           +VGL+QNG   +AL LF  M    +  +  +L S++  C  +  L  G  V A +T    
Sbjct: 430 LVGLAQNGHARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHF 489

Query: 401 DSDQIISTSLVDFYCKC----------------------------------GYDALALFN 426
            S+ ++ T+L+D Y KC                                  G+ AL +++
Sbjct: 490 ASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYH 549

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
            M   G++P   TF ++LSAC H GLV+EG   F  M   ++  P  + Y+C+VDL +RA
Sbjct: 550 RMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRA 609

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G L +A  LI QMPF    G+  ++L GC+ H D  LG K+A+R++ L+  N   YI LS
Sbjct: 610 GRLRQAEELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLSLESRNPSIYITLS 669

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           +I+A +  W+    +R +M E+ + K+PG S
Sbjct: 670 NIYAKASRWDSVKYVRGLMMEQEIKKIPGYS 700



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 143/565 (25%), Positives = 236/565 (41%), Gaps = 109/565 (19%)

Query: 46  RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS 105
           +L+  Y   G   +A  +FDE+P+      NAM+ G+++       ++L  +M  +    
Sbjct: 94  KLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMM-SRCHLE 152

Query: 106 WNMLISGFA-KADLAALEY--GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 162
           ++     FA KA +  L+Y  G ++    +  GL     LGSS++N   K GD   A   
Sbjct: 153 FDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFLVKTGDIMCAQFF 212

Query: 163 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 222
            + M E D  C                               WN MI G++      E  
Sbjct: 213 FHQMVEKDVVC-------------------------------WNVMIGGFMQEGLFREGY 241

Query: 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
            LF  M  N +   A T+ S++ +C  +  L  GK +HG     G+  D  V + L+D Y
Sbjct: 242 NLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMY 301

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
            K                                G +E A+ IF  MP+++L+SWN MI 
Sbjct: 302 CKS-------------------------------GDVESARWIFENMPSRNLVSWNVMIS 330

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G  QNG  +E L LF  +   D+  D  ++ S+I  C+  + L+ G+ +   +   GLD 
Sbjct: 331 GYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDL 390

Query: 403 DQIISTSLVDFYCKCG---------------------------------YDALALFNEMR 429
           + ++ T++VD Y KCG                                  DAL LF++M+
Sbjct: 391 NLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQ 450

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
           N  V    +T  +++  C   GL++EG+    A   ++H   E+   + ++D++A+   +
Sbjct: 451 NERVTFNALTLVSLVYCCTLLGLLREGRS-VHATLTRFHFASEVVVMTALIDMYAKCSKI 509

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK---VAERMIE--LDPENACAYIQ 544
           N A  + +      DV +++S++ G   +G  GLG K   V  RM    L P N   ++ 
Sbjct: 510 NSAEMVFKYGLTPKDVILYNSMISG---YGMHGLGHKALCVYHRMNREGLQP-NESTFVS 565

Query: 545 LSSIFATSGEWEKSSLIRDIMREKH 569
           L S  + SG  E+   +   M + H
Sbjct: 566 LLSACSHSGLVEEGIALFQNMVKDH 590



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +  L+Q C+    +  GK LH    ++G+ LN  LP A  ++ +Y +CG+   A  +F+ 
Sbjct: 360 VVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTA--IVDLYAKCGSLAYASSVFER 417

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-QKNDFSWNMLIS-GFAKADLAALEYG 124
           M  +N  SW AM+ G  + GH   +L+LF+ M  ++  F+   L+S  +    L  L  G
Sbjct: 418 MKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREG 477

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           + +H+ +       + V+ ++L+++Y KC   NSA  V      P D             
Sbjct: 478 RSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDV------------ 525

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                             +++NSMISGY  +    +AL ++H+M R G+  + ST  S+L
Sbjct: 526 ------------------ILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLL 567

Query: 245 SACSSLGFLEHG 256
           SACS  G +E G
Sbjct: 568 SACSHSGLVEEG 579



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 161/395 (40%), Gaps = 66/395 (16%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D F ++ L++ Y++ G + +AR+VFD      +V+ N+M++GY+ N    + + L   M 
Sbjct: 88  DQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMS 147

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
           R  +  D+ T    L AC  L   E G +V G A   G+     + S++L+   K     
Sbjct: 148 RCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFLVKT---- 203

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
                                      G I  A+  F  M  K ++ WN MI G  Q G 
Sbjct: 204 ---------------------------GDIMCAQFFFHQMVEKDVVCWNVMIGGFMQEGL 236

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
             E  +LF +M    +     ++ S+I +C  + +L  G+ +   V   G+  D  + T+
Sbjct: 237 FREGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTT 296

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           L+D YCK G                                  + L LF ++    V   
Sbjct: 297 LIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFD 356

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
             T  +++  C     + +G K      ++  +D  +   + +VDL+A+ G L  A ++ 
Sbjct: 357 SGTVVSLIQLCSRTADL-DGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVF 415

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           E+M    +V  W+++L G   +G      K+ ++M
Sbjct: 416 ERMK-NKNVISWTAMLVGLAQNGHARDALKLFDQM 449



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 52/285 (18%), Positives = 103/285 (36%), Gaps = 66/285 (23%)

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
           +  D  + + L+  YS  G   +A K+F E+    T+L N M+  Y    R  D      
Sbjct: 85  IYGDQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDC----- 139

Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
                                  IE L +   M++  L  D ++    + AC  +   E+
Sbjct: 140 -----------------------IELLKM---MSRCHLEFDSYTCNFALKACMFLLDYEM 173

Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------------- 418
           G +V       GL   + + +S+++F  K G                             
Sbjct: 174 GMEVIGLAVCKGLAGGRFLGSSILNFLVKTGDIMCAQFFFHQMVEKDVVCWNVMIGGFMQ 233

Query: 419 ----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
                +   LF +M    ++P+ +T  +++ +C     +  G K        + +  +  
Sbjct: 234 EGLFREGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFG-KCMHGFVLGFGMSRDTR 292

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
             + ++D++ ++G +  A  + E MP    V  W+ ++ G V +G
Sbjct: 293 VLTTLIDMYCKSGDVESARWIFENMPSRNLVS-WNVMISGYVQNG 336


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 183/614 (29%), Positives = 288/614 (46%), Gaps = 111/614 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFD 65
           L   LQ+C       +G ++H   LK    N  L +  AN L+ M++R G  + A  +FD
Sbjct: 115 LVAALQACEDSSFKKLGMEIHAAILKS---NQVLDVYVANALVAMHVRFGKMSYAARIFD 171

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLA 119
           E+  ++  +WN+MI GF + G   ++LQ F      N+ P +      +  SG     L 
Sbjct: 172 ELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASG----RLG 227

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L  GK+IH++ + N LD +  +G++L+++Y KC                   C  A   
Sbjct: 228 YLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKC-------------------CCVAY-- 266

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                     A  VFD+  +   + W ++I+ Y  NN  TEAL L  K++  G+  D   
Sbjct: 267 ----------AGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMM 316

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           + S L ACS L  L H K+VHG+  K                   RG+            
Sbjct: 317 IGSTLLACSGLRCLSHAKEVHGYTLK-------------------RGLS----------- 346

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
             D ++ N +I VY+ CG I  A  +F ++  K ++SW SMI     NG   EAL +F  
Sbjct: 347 --DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYL 404

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
           M +  +  D  +L S++SA A++S+L  G+++   +   G   +     SLVD Y  CG 
Sbjct: 405 MKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGS 464

Query: 419 --------------------------------YDALALFNEMRNTGVKPTIITFTAILSA 446
                                             A+ LF+ M +  + P  ITF A+L A
Sbjct: 465 LENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYA 524

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GL+ EG++  + MK +Y ++P  EHY+C+VDL  RA  L EA + ++ M  E    
Sbjct: 525 CSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAE 584

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W + L  C  H +K LG   A+++++LDP++  +Y+ +S++FA SG W+    +R  M+
Sbjct: 585 VWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMK 644

Query: 567 EKHVGKLPGCSWAD 580
              + K PGCSW +
Sbjct: 645 GGGLKKNPGCSWIE 658



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 208/467 (44%), Gaps = 74/467 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     IH G ++H   +K G  +S + +AN L+ MY +C +   A  LFD M  R
Sbjct: 16  VLKACGVVEDIHRGAEIHGLIIKCG-YDSIVFVANSLVSMYAKCNDILGARKLFDRMNER 74

Query: 71  N-CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADLAALEYGKQI 127
           N   SWN++I  +   G   ++L LF  M +      ++ ++ +  A  D +  + G +I
Sbjct: 75  NDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEI 134

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H+ IL +    D  + ++LV ++ + G  + A ++ + + E D+   +++I+G+   G  
Sbjct: 135 HAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLY 194

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           N                               EAL  F  ++   +  D  +L S+L+A 
Sbjct: 195 N-------------------------------EALQFFCGLQDANLKPDEVSLISILAAS 223

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
             LG+L +GK++H +A K  +  ++ + + L+D YSK                       
Sbjct: 224 GRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSK----------------------- 260

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                   C  +  A  +F  M NK LISW ++I   +QN    EAL L   +    + +
Sbjct: 261 --------CCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDV 312

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALF 425
           D   + S + AC+ +  L   ++V       GL SD ++   ++D Y  CG    A  +F
Sbjct: 313 DTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRMF 371

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
             ++   V    +++T+++S   H GL  E    F  MK +  ++P+
Sbjct: 372 ESIKCKDV----VSWTSMISCYVHNGLANEALGVFYLMK-ETSVEPD 413



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 155/321 (48%), Gaps = 42/321 (13%)

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM----KEPDDFCLSALISGYANCGKMN 188
           V G+ FDS     ++   G   D +   ++  ++     +   F  ++L+S YA C  + 
Sbjct: 3   VLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDIL 62

Query: 189 DARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
            AR++FDR  + + V+ WNS+IS Y  N +  EAL LF +M++ GV  +  TL + L AC
Sbjct: 63  GARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQAC 122

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
               F + G ++H    K   + DV VA+AL+  + + G  S A ++F EL   D I  N
Sbjct: 123 EDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWN 182

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
                                          SMI G +QNG   EAL  FC +   +L+ 
Sbjct: 183 -------------------------------SMIAGFTQNGLYNEALQFFCGLQDANLKP 211

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA--LF 425
           D+ SL S+++A   +  L  G+++ A      LDS+  I  +L+D Y KC   A A  +F
Sbjct: 212 DEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVF 271

Query: 426 NEMRNTGVKPTIITFTAILSA 446
           ++M N      +I++T +++A
Sbjct: 272 DKMIN----KDLISWTTVIAA 288



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 134/319 (42%), Gaps = 67/319 (21%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           MR  GV  D+ T   VL AC  +  +  G ++HG   K G    V VA++L+  Y+K   
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAK--- 57

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQ 346
                                       C  I  A+ +F  M  ++ ++SWNS+I   S 
Sbjct: 58  ----------------------------CNDILGARKLFDRMNERNDVVSWNSIISAYSL 89

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           NG  +EAL LF  M K  +  + ++L + + AC + S  +LG ++ A +       D  +
Sbjct: 90  NGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYV 149

Query: 407 STSLVDFYCKCGY---------------------------------DALALFNEMRNTGV 433
           + +LV  + + G                                  +AL  F  +++  +
Sbjct: 150 ANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANL 209

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
           KP  ++  +IL+A    G +  G++   A   +  +D  +   + ++D++++  C+  A 
Sbjct: 210 KPDEVSLISILAASGRLGYLLNGKE-IHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAG 268

Query: 494 NLIEQMPFEADVGMWSSIL 512
            + ++M    D+  W++++
Sbjct: 269 LVFDKM-INKDLISWTTVI 286


>gi|225216998|gb|ACN85287.1| EMB2261 putative [Oryza australiensis]
          Length = 626

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 176/603 (29%), Positives = 276/603 (45%), Gaps = 105/603 (17%)

Query: 18  HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPRRNCFSWN 76
           H    +G  LH    + G L     +AN LL  Y+R       AL  FD++P R+  + +
Sbjct: 51  HPPPRLGYCLHARAARAGFLADRY-LANALLAFYVRLPRHLPHALRAFDDLPHRDVVAHS 109

Query: 77  AMIEGFMKLGHKEKSLQLFNVM--PQKNDFSWNMLISGFAKADLAAL---EYGKQIHSHI 131
           +++  F++ G   ++L     M     +D S N      A    A L   + G  +H  +
Sbjct: 110 SILAAFLRAGMPRRALASLRAMLAGADDDVSPNAHALSAAVKACAVLRDRKAGACLHGSV 169

Query: 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
           LV G+  D V+ SSLV++YG       A +    M+ PD  C                  
Sbjct: 170 LVRGMGDDDVVLSSLVDMYGHVAAPGDARKAFEEMRGPDGIC------------------ 211

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSL 250
                        + S+IS ++ N+   EA+  F  M   NGV  D  T  S+++A  +L
Sbjct: 212 -------------YTSLISAFVRNDWFEEAVRWFRSMLTMNGVRPDGCTFGSMMTALGNL 258

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
                G+Q H      G+  +VIV S+ LD Y+K                          
Sbjct: 259 KRGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAK-------------------------- 292

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                CG + +A+ +F  M  ++ +S  +++ G  QNG   + + LF  M+K D   D +
Sbjct: 293 -----CGLMVEARKVFDRMEVRNEVSRCALLGGYCQNGEYEKVIALFREMDKED--GDWY 345

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----------- 419
           SL +V+ ACA +SS++ G+++  R   +G   D ++ ++LVD Y KCG            
Sbjct: 346 SLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYACSVFEAS 405

Query: 420 ----------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                  A+ LFN M   G +P  I+F  +L AC H G+V++G+
Sbjct: 406 TVRNTITWNAMISGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQGR 465

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
            +FD+M   Y I P IEHY+CMVDL +R   L EA +LI + PF  D  +W++IL     
Sbjct: 466 NYFDSMCKDYGIAPGIEHYNCMVDLLSRVELLEEAEDLINESPFRNDSSLWAAILGASAT 525

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           H +  +  +VA++M+EL+P+   +YI L +++ T G WE +  IR +M  + V K PG S
Sbjct: 526 HSNPDVAERVAKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMESRKVKKEPGMS 585

Query: 578 WAD 580
           W D
Sbjct: 586 WID 588


>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 662

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 179/634 (28%), Positives = 303/634 (47%), Gaps = 100/634 (15%)

Query: 33  KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL 92
           K  + +S L  +N+ +  + R G   +A  LFD++ RRN  +WN+MI G++K G   K+ 
Sbjct: 39  KTSVEDSNLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKAR 98

Query: 93  QLFNVMPQKNDFSWNMLISGFAK-ADLAALEYGKQIHSHILVNGLDFDS------VLGSS 145
           +LF+ MP+++  SWN++ISG+        +E G+ +          FD       V  ++
Sbjct: 99  KLFDEMPERDVVSWNLIISGYVSCRGKRFIEEGRNL----------FDKMPERCCVSWNT 148

Query: 146 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 205
           +++ Y K G  + A  + N M E +    +A++SG+   G +  A   F R  +      
Sbjct: 149 MISGYAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERDVTSL 208

Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA--SVLSACSSLG------------ 251
           ++++SG I N+E  +A  +      NG  ++    A  ++++     G            
Sbjct: 209 SALVSGLIQNSELDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKI 268

Query: 252 --FLEHGKQVHGH------------ACKVGVIDDVIVASALLDTYSKRGMPS-------- 289
             + + GK   G              C V    DVI A  L D    R   S        
Sbjct: 269 PFYNDQGKGRTGRFERNVVSWNTMIMCYVKA-GDVISARKLFDQMPDRDSFSWNTMISGY 327

Query: 290 -------DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
                  +A  LF ++   DT+  N MI+ Y+  G +E A   F  MP K+L+SWNS+I 
Sbjct: 328 VHVLDMEEASNLFHKMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWNSVIA 387

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGL 400
           G  +NG  I A++LF  M     + D+ +L+S++S  + I  L+LG Q+   V  T+I  
Sbjct: 388 GYEKNGDYIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKTVI-- 445

Query: 401 DSDQIISTSLVDFYCKCG----------------------------------YDALALFN 426
             D  ++ +L+  Y +CG                                   +AL LF 
Sbjct: 446 -PDVPLNNALITMYSRCGAIFEARTIFYEMKLQKEVISWNAMIGGYASHGYATEALELFK 504

Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
            MR+  V+PT ITF ++L+AC H GLV+EG++ F++M   Y ++P +EH++ +VD+  R 
Sbjct: 505 LMRSFKVQPTYITFISVLNACAHAGLVEEGRRIFESMVSDYGVEPRVEHFASLVDIVGRQ 564

Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546
           G L EA++LI  M  E D  +W ++L     H +  + R  AE +++L+P+++  YI L 
Sbjct: 565 GQLEEALDLINSMTIEPDKAVWGALLGASRVHNNVEMARVAAEALMKLEPDSSVPYILLY 624

Query: 547 SIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +++   G+W+ ++ IR +M   ++ K    SW D
Sbjct: 625 NMYVDVGQWDNAAEIRSMMERNNIKKEAAISWVD 658



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 111/228 (48%), Gaps = 14/228 (6%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMI 79
           + +G Q+H   + K ++   +P+ N L+ MY RCG   +A  +F EM  ++   SWNAMI
Sbjct: 430 LQLGMQIH-QLVSKTVI-PDVPLNNALITMYSRCGAIFEARTIFYEMKLQKEVISWNAMI 487

Query: 80  EGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVN- 134
            G+   G+  ++L+LF +M     Q    ++  +++  A A L  +E G++I   ++ + 
Sbjct: 488 GGYASHGYATEALELFKLMRSFKVQPTYITFISVLNACAHAGL--VEEGRRIFESMVSDY 545

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG---YANCGKMNDA 190
           G++      +SLV++ G+ G    A  ++N M  EPD     AL+     + N      A
Sbjct: 546 GVEPRVEHFASLVDIVGRQGQLEEALDLINSMTIEPDKAVWGALLGASRVHNNVEMARVA 605

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
                +    SSV +  + + Y+   +   A  +   M RN + ++A+
Sbjct: 606 AEALMKLEPDSSVPYILLYNMYVDVGQWDNAAEIRSMMERNNIKKEAA 653


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 183/676 (27%), Positives = 312/676 (46%), Gaps = 138/676 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C +     +GKQLH   ++ G     + +   L+ MYM+  +  D   +F+ M
Sbjct: 106 LVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAM 165

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
           P+RN  +W +++ G+++ G     ++LF  M  +    N  ++  ++S  A   +  ++ 
Sbjct: 166 PKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGM--VDL 223

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+++H+  +                 +G C      N ++NM               YA 
Sbjct: 224 GRRVHAQSVK----------------FGCCSTVFVCNSLMNM---------------YAK 252

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG + +AR VF        V WN++++G + N  D EAL LFH  R +  +   ST A+V
Sbjct: 253 CGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATV 312

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD------------- 290
           +  C+++  L   +Q+H    K G      V +AL+D YSK G   +             
Sbjct: 313 IKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQN 372

Query: 291 -------------------ACKLFSELK---------VYDTILL---------------- 306
                              A  LFS ++          Y TIL                 
Sbjct: 373 VVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIK 432

Query: 307 ----------NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                       ++  YS     E+A  IF+ +  K ++SW++M+   +Q G    A ++
Sbjct: 433 TNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNI 492

Query: 357 FCNMNKLDLRMDKFSLASVISACAN-ISSLELGEQ----------------------VFA 393
           F  M    L+ ++F+++SVI ACA+  + ++LG Q                      ++A
Sbjct: 493 FIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYA 552

Query: 394 RVTII---------GLDSDQIISTSLVDFYCKCGYD--ALALFNEMRNTGVKPTIITFTA 442
           R   I           D D +   S++  Y + GY   AL +F +M   G++   +TF +
Sbjct: 553 RKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLS 612

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           ++  C H GLV+EGQ++FD+M   Y I P +EHY+CMVDL++RAG L+EA++LIE M F 
Sbjct: 613 VIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFP 672

Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
           A   +W ++L  C  H +  LG+  AE+++ L+P ++  Y+ LS+I++ +G+W++   +R
Sbjct: 673 AGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVR 732

Query: 563 DIMREKHVGKLPGCSW 578
            +M  K V K  GCSW
Sbjct: 733 KLMDTKKVKKEAGCSW 748



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 164/405 (40%), Gaps = 75/405 (18%)

Query: 167 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 226
           K       S  +    N      AR+ FD     +++  +  +  +       +AL  F 
Sbjct: 34  KSQSTLACSVPLENQTNLNDATGARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFL 91

Query: 227 KMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSK 284
            + R +G       L  VL  C S+     GKQ+HG   + G    DV V ++L+D Y K
Sbjct: 92  DVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMK 151

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344
                           + +++               D + +F  MP +++++W S++ G 
Sbjct: 152 ----------------WHSVV---------------DGRKVFEAMPKRNVVTWTSLLTGY 180

Query: 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404
            Q+G+  + ++LF  M    +  +  + ASV+S  A+   ++LG +V A+    G  S  
Sbjct: 181 IQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTV 240

Query: 405 IISTSLVDFYCKCG---------------------------------YDALALFNEMRNT 431
            +  SL++ Y KCG                                  +AL LF++ R++
Sbjct: 241 FVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSS 300

Query: 432 GVKPTIITFTAILSAC---DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488
               T  T+  ++  C      GL +  Q     +K  +H    +   + ++D +++AG 
Sbjct: 301 ITMLTQSTYATVIKLCANIKQLGLAR--QLHSSVLKRGFHSYGNV--MTALMDAYSKAGQ 356

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533
           L  A+++   M    +V  W++++ GC+ +GD  L   +  RM E
Sbjct: 357 LGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE 401


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 166/575 (28%), Positives = 281/575 (48%), Gaps = 101/575 (17%)

Query: 43   IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---- 98
            + + L+  Y  CG  +DA  +FD +  ++  +W AM+  + +    E +LQ+F+ M    
Sbjct: 568  VGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAV 627

Query: 99   PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
             + N F+   ++   A   L+++  GK IH+               S+  LY        
Sbjct: 628  SKLNPFALTSVLR--AAVCLSSVVLGKGIHA--------------CSVKTLY-------- 663

Query: 159  ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
                     + +     AL+  YA CG + DAR  F+  T+   ++W+ MIS Y   N++
Sbjct: 664  ---------DTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQN 714

Query: 219  TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
             +A  LF +M R+ V  +  +L+SVL AC+++  L+ GKQ+H HA K+G   ++ V +AL
Sbjct: 715  EQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNAL 774

Query: 279  LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
            +D Y+K                               C  +E +  IF ++ + + +SWN
Sbjct: 775  IDLYAK-------------------------------CSDMESSLEIFSSLRDVNEVSWN 803

Query: 339  SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
            ++IVG S++G    AL +F  M    +   + + +SV+ ACA+ +S+    QV   +   
Sbjct: 804  TIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKS 863

Query: 399  GLDSDQIISTSLVDFYCKCG-------------------YDAL--------------ALF 425
              +SD I+S SL+D Y KCG                   ++A+               LF
Sbjct: 864  TFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELF 923

Query: 426  NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
            + M    +K   ITF A+LS C   GLV +G   FD+M+  + I+P +EHY+C+V L  R
Sbjct: 924  DMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGR 983

Query: 486  AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545
            AG LN+A+N I  +P      +W ++L  C+ H +  LGR  AE+++E++P++   Y+ L
Sbjct: 984  AGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLL 1043

Query: 546  SSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            S++++ +G  ++ +  R  MR   V K PG SW +
Sbjct: 1044 SNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVE 1078



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 158/603 (26%), Positives = 254/603 (42%), Gaps = 111/603 (18%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ARLLQ C        G+ +H H ++ G L    L  AN LL MY + G    A  +FD +
Sbjct: 432 ARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGL 491

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P RN  S+  +++G    G  E++  LF  +     + N F    ++      D   L +
Sbjct: 492 PERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAW 551

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G  +H+     G D ++ +GS+L++ Y  CG  + A                        
Sbjct: 552 G--VHACACKLGHDRNAFVGSALIDAYSMCGVVSDA------------------------ 585

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
                  RRVFD      +V W +M+S Y  N+     L +F KMR      +   L SV
Sbjct: 586 -------RRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSV 638

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVI--VASALLDTYSKRGMPSDACKLFSELKVY 301
           L A   L  +  GK +  HAC V  + D    V  ALLD Y+K G   DA   F  +   
Sbjct: 639 LRAAVCLSSVVLGKGI--HACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTND 696

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D IL + MI+ Y+ C + E                               +A +LF  M 
Sbjct: 697 DVILWSLMISRYAQCNQNE-------------------------------QAFELFIRMM 725

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---- 417
           +  +  ++FSL+SV+ ACAN+  L+LG+Q+      IG +S+  +  +L+D Y KC    
Sbjct: 726 RSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDME 785

Query: 418 -----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACD 448
                                        G  AL++F EMR   V  T +T++++L AC 
Sbjct: 786 SSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACA 845

Query: 449 HCGLVKE-GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
               +   GQ      K  ++ D  + +   ++D +A+ GC+ +A  + E +  E D+  
Sbjct: 846 STASINHVGQVHCLIEKSTFNSDTIVSN--SLIDSYAKCGCIRDAREIFETLK-ECDLVS 902

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELD-PENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           W++I+ G   HG   + +++ + M +     N   ++ L S+  ++G   +   + D MR
Sbjct: 903 WNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMR 962

Query: 567 EKH 569
             H
Sbjct: 963 LDH 965



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/500 (24%), Positives = 229/500 (45%), Gaps = 79/500 (15%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L  +L++     S+ +GK +H   +K  + ++   +   LL MY +CGN  DA L F+ +
Sbjct: 635  LTSVLRAAVCLSSVVLGKGIHACSVKT-LYDTERHVYGALLDMYAKCGNIEDARLAFEMV 693

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
               +   W+ MI  + +    E++ +LF  M +     N+FS + ++   A A++  L+ 
Sbjct: 694  TNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQ--ACANMPLLDL 751

Query: 124  GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            GKQIH+H +  G + +  +G++L++LY KC D  S+ ++ + +++ ++   + +I GY+ 
Sbjct: 752  GKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSK 811

Query: 184  CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
             G   +A                              AL +F +MR   V     T +SV
Sbjct: 812  SG-FGEA------------------------------ALSVFREMRAASVPSTQVTYSSV 840

Query: 244  LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
            L AC+S   + H  QVH    K     D IV+++L+D+Y+K G   DA ++F  LK  D 
Sbjct: 841  LRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDL 900

Query: 304  ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
            +  N +I+ Y+  G+   A+                               +LF  M+K 
Sbjct: 901  VSWNAIISGYAVHGQAAMAQ-------------------------------ELFDMMSKN 929

Query: 364  DLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGY--D 420
             ++ +  +  +++S C +   +  G  +F  + +  G++      T +V    + G   D
Sbjct: 930  SIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLND 989

Query: 421  ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCM 479
            AL    ++ +    P+ + + A+LS+C     V+ G+  F A K    I+P+ E  Y  +
Sbjct: 990  ALNFIGDIPSA---PSAMVWRALLSSCIVHKNVELGR--FSAEK-VLEIEPQDETTYVLL 1043

Query: 480  VDLFARAGCLNEAVNLIEQM 499
             ++++ AG L++     + M
Sbjct: 1044 SNMYSAAGSLDQVAFFRKSM 1063



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 120/307 (39%), Gaps = 64/307 (20%)

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           D+   A +L  C + G    G+ VHGH  + G +       A LD +             
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGL-------ARLDLFCA----------- 468

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                      N ++ +Y+  G    A  +F  +P ++++S+ +++ G +  G   EA  
Sbjct: 469 -----------NVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASA 517

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF  +      +++F L +V+     + +L L   V A    +G D +  + ++L+D Y 
Sbjct: 518 LFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYS 577

Query: 416 KCGY--------------DALA-------------------LFNEMRNTGVKPTIITFTA 442
            CG               DA+A                   +F++MR    K      T+
Sbjct: 578 MCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTS 637

Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
           +L A      V  G K   A   +   D E   Y  ++D++A+ G + +A  L  +M   
Sbjct: 638 VLRAAVCLSSVVLG-KGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDA-RLAFEMVTN 695

Query: 503 ADVGMWS 509
            DV +WS
Sbjct: 696 DDVILWS 702



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 10/183 (5%)

Query: 3    TRIDYLARLLQSCNTHHSI-HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
            T++ Y + +L++C +  SI HVG Q+H   ++K   NS   ++N L+  Y +CG   DA 
Sbjct: 833  TQVTY-SSVLRACASTASINHVG-QVHC-LIEKSTFNSDTIVSNSLIDSYAKCGCIRDAR 889

Query: 62   LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAD 117
             +F+ +   +  SWNA+I G+   G    + +LF++M +     ND ++  L+S      
Sbjct: 890  EIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTG 949

Query: 118  LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA-NQVLNMMKEPDDFCLSA 176
            L + +      S  L +G++      + +V L G+ G  N A N + ++   P      A
Sbjct: 950  LVS-QGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRA 1008

Query: 177  LIS 179
            L+S
Sbjct: 1009 LLS 1011


>gi|147841850|emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]
          Length = 761

 Score =  262 bits (669), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 167/582 (28%), Positives = 279/582 (47%), Gaps = 92/582 (15%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           L   N+ +   +R G   +A  LFD MP+RN  +WN+MI G+++     K+ +LF+ MP 
Sbjct: 67  LYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPD 126

Query: 101 KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
           ++  SWN++ISG+       +E G+    H+     + D V  +++++ Y + G  + A 
Sbjct: 127 RDVVSWNLMISGYVSCRGRWVEEGR----HLFDEMPERDCVSWNTMISGYTRSGRMDEAL 182

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           Q+ + M+E +    +A+++G+   G +  A   F R  +  S   +++++G I N E  E
Sbjct: 183 QLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDE 242

Query: 221 ALLLFHKMRR---------------------NGVLEDASTLASVLSACSSLGFLEHGKQV 259
           A  +    RR                     NG ++ A  L         + F + G++ 
Sbjct: 243 AKRILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQL------FDQIPFYDGGQKD 296

Query: 260 HGH------------ACKVGVID--------------DVIVASALLDTYSKRGMPSDACK 293
            G              C V   D              D I  + ++  Y +     +A  
Sbjct: 297 GGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWM 356

Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
           LF E+   DT+  N+MI+ ++  G +E A+ +F T+P K+L+SWNSMI G   NG    A
Sbjct: 357 LFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGA 416

Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
            +L+  M     + D+ +L+SV+S C+  ++L LG Q+  ++T   +  D  I+ SL+  
Sbjct: 417 TELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITM 475

Query: 414 YCKCGY----------------------------------DALALFNEMRNTGVKPTIIT 439
           Y +CG                                   DAL LF  M+   V+PT IT
Sbjct: 476 YSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYIT 535

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           F ++L+AC H G VKEG+  F +M  ++ I+P IEH++ +VD+  R G L EA++LI  M
Sbjct: 536 FISVLNACAHAGXVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSM 595

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541
           PFE D  +W ++L  C  H +  L R  AE +++L+PE++  
Sbjct: 596 PFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAP 637



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L  C+   ++H+G Q+H    K  I +  +PI N L+ MY RCG   +A  +FDE+
Sbjct: 435 LSSVLSVCSGFAALHLGMQIHQQITKTVIPD--IPINNSLITMYSRCGAIVEARTIFDEV 492

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGK 125
             ++   SWNAMI G+   G    +L+LF +M + K   ++   IS       A      
Sbjct: 493 KLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGXVKEG 552

Query: 126 QIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
           ++H   +      +  +   +SLV++ G+ G    A  ++N M  EPD     AL+
Sbjct: 553 RMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALL 608


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  262 bits (669), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 160/544 (29%), Positives = 273/544 (50%), Gaps = 47/544 (8%)

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           +++  + +G   ++ QLF+ +PQ +  + + LIS F    L       ++++ +   G+ 
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLP--NEAIRLYASLRARGIK 129

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLN------MMKEPDDFCLSALISGYANCGKMNDAR 191
             + +  ++    G  GD +   +V +      MM   D F  +ALI  Y  C  +  AR
Sbjct: 130 PHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMS--DAFLGNALIHAYGKCKCVEGAR 187

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
           RVFD       V W SM S Y++       L +F +M  NGV  ++ TL+S+L ACS L 
Sbjct: 188 RVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELK 247

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
            L+ G+ +HG A + G+I++V V SAL+  Y++      A  +F  +   D +  N ++T
Sbjct: 248 DLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLT 307

Query: 312 VYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
            Y +    +    +F  M +K +     +WN++I G  +NG   +A+++   M  L  + 
Sbjct: 308 AYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKP 367

Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
           ++ +++S + AC+ + SL +G++V   V    L  D    T+LV  Y KCG         
Sbjct: 368 NQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVF 427

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                    + L LF  M  +G+KP  +TFT +LS C H  LV+
Sbjct: 428 DMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVE 487

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG + F++M   + ++P+  HY+CMVD+F+RAG L+EA   I++MP E     W ++L  
Sbjct: 488 EGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGA 547

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  + +  L +  A ++ E++P N   Y+ L +I  T+  W ++S  R +M+E+ + K P
Sbjct: 548 CRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTP 607

Query: 575 GCSW 578
           GCSW
Sbjct: 608 GCSW 611



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 200/434 (46%), Gaps = 48/434 (11%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H   ++ G+++    + N L+  Y +C     A  +FD++  ++  SW +M   ++ 
Sbjct: 152 KEVHDDAIRCGMMSDAF-LGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVN 210

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVL 142
            G     L +F  M        ++ +S    A  +L  L+ G+ IH   + +G+  +  +
Sbjct: 211 CGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFV 270

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT---- 198
            S+LV+LY +C     A  V ++M   D    + +++ Y    + +    +F + +    
Sbjct: 271 CSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGV 330

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           +     WN++I G + N +  +A+ +  KM+  G   +  T++S L ACS L  L  GK+
Sbjct: 331 EADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKE 390

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           VH +  +  +I D+   +AL+  Y+K                               CG 
Sbjct: 391 VHCYVFRHWLIGDLTTMTALVYMYAK-------------------------------CGD 419

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +  ++++F  +  K +++WN+MI+  + +G+  E L LF +M +  ++ +  +   V+S 
Sbjct: 420 LNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSG 479

Query: 379 CANISSLELGEQVF---ARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGV 433
           C++   +E G Q+F    R  ++  D++      +VD + + G  ++A      M    +
Sbjct: 480 CSHSRLVEEGLQIFNSMGRDHLVEPDANHY--ACMVDVFSRAGRLHEAYEFIQRM---PM 534

Query: 434 KPTIITFTAILSAC 447
           +PT   + A+L AC
Sbjct: 535 EPTASAWGALLGAC 548



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 70/334 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C+    +  G+ +H   ++ G++ +   + + L+ +Y RC +   A L+FD M
Sbjct: 236 LSSILPACSELKDLKSGRAIHGFAVRHGMIENVF-VCSALVSLYARCLSVKQARLVFDLM 294

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGF---------- 113
           P R+  SWN ++  +      +K L LF+ M  K    ++ +WN +I G           
Sbjct: 295 PHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAV 354

Query: 114 -----------------------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
                                  A + L +L  GK++H ++  + L  D    ++LV +Y
Sbjct: 355 EMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMY 414

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
            KCGD                               +N +R VFD       V WN+MI 
Sbjct: 415 AKCGD-------------------------------LNLSRNVFDMICRKDVVAWNTMII 443

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
               +    E LLLF  M ++G+  ++ T   VLS CS    +E G Q+     +  +++
Sbjct: 444 ANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVE 503

Query: 271 -DVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
            D    + ++D +S+ G   +A +    + +  T
Sbjct: 504 PDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPT 537



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/502 (20%), Positives = 184/502 (36%), Gaps = 144/502 (28%)

Query: 103 DFSWNMLISGFAKADLAALEYG-------KQIHSHILVNGL--DFDSVLGSSLVNLYGKC 153
           D S  ++I GF      ++ +        KQ+ S  +   +  +  S LG  L+      
Sbjct: 20  DHSRELIIFGFVLPPFFSITHSTQSSSIWKQLTSTKVAPSVPTNIPSHLGLRLLKAALNV 79

Query: 154 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 213
           GDF  A Q+ + + +PD    S LIS +   G  N                         
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPN------------------------- 114

Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
                 EA+ L+  +R  G+    S   +V  AC + G     K+VH  A + G++ D  
Sbjct: 115 ------EAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAF 168

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
           + +AL+  Y K      A ++F +L V D +   +M + Y +CG                
Sbjct: 169 LGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGL--------------- 213

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
                           P   L +FC M    ++ +  +L+S++ AC+ +  L+ G  +  
Sbjct: 214 ----------------PRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHG 257

Query: 394 RVTIIGLDSDQIISTSLVDFYCKC--------------------------------GYD- 420
                G+  +  + ++LV  Y +C                                 YD 
Sbjct: 258 FAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDK 317

Query: 421 ALALFNEM-----------------------------------RNTGVKPTIITFTAILS 445
            LALF++M                                   +N G KP  IT ++ L 
Sbjct: 318 GLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLP 377

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC     ++ G++      +++ +  ++   + +V ++A+ G LN + N+ + M    DV
Sbjct: 378 ACSILESLRMGKE-VHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFD-MICRKDV 435

Query: 506 GMWSSILRGCVAHGDKGLGRKV 527
             W++++     HG+   GR+V
Sbjct: 436 VAWNTMIIANAMHGN---GREV 454



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 88/177 (49%), Gaps = 9/177 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++  L +C+   S+ +GK++H +  +  ++   L     L+ MY +CG+   +  +FD +
Sbjct: 372 ISSFLPACSILESLRMGKEVHCYVFRHWLIGD-LTTMTALVYMYAKCGDLNLSRNVFDMI 430

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
            R++  +WN MI      G+  + L LF  M Q     N  ++  ++SG + + L  +E 
Sbjct: 431 CRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRL--VEE 488

Query: 124 GKQIHSHILVNGL-DFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
           G QI + +  + L + D+   + +V+++ + G  + A + +  M  EP      AL+
Sbjct: 489 GLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALL 545


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  262 bits (669), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 176/588 (29%), Positives = 282/588 (47%), Gaps = 94/588 (15%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+++H   LK G     + IA   +  Y R G  + A  LFD M  R+  +WNAMI GF 
Sbjct: 158 GRKVHCLVLKLG-FECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFY 216

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLG 143
             G   ++L++F+ M  K+    ++ IS                   +L   +  D ++ 
Sbjct: 217 LNGKVAEALEVFDEMRFKSVSMDSVTISS------------------LLPICVQLDDIIS 258

Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
             L+++Y            + +  E D F  +ALI+ YA  G++  A  +F++      V
Sbjct: 259 GVLIHVYA-----------IKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIV 307

Query: 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
            WNS+++ +  N +   AL +++KM   GV+ D  TL S+ S  + LG     + +HG  
Sbjct: 308 SWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFV 367

Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
            +                          C       ++D  L N +I +Y+  G I+ A+
Sbjct: 368 TR-------------------------RCWF-----LHDIALGNAIIDMYAKLGFIDSAR 397

Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISACANI 382
            +F  +P K +ISWNS+I G SQNG   EA+D++ +M      + ++ +  S+++A + +
Sbjct: 398 KVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQL 457

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------ 418
            +L+ G +   ++    L  D  +ST LVD Y KCG                        
Sbjct: 458 GALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAII 517

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                      A+ LF EM++ GVKP  ITF ++LSAC H GLV EGQ  F  M+  Y I
Sbjct: 518 SCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGI 577

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P ++HY CMVDLF RAG L +A N ++ MP   DV +W ++L  C  H +  L R V++
Sbjct: 578 RPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSD 637

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            +++++ EN   Y+ LS+I+A  G WE    +R + R++ + K PG S
Sbjct: 638 HLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWS 685



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 137/593 (23%), Positives = 259/593 (43%), Gaps = 117/593 (19%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H+ KQLH   +  G   S   ++ +L+  Y   G+   A L FD++  ++ ++WN+MI 
Sbjct: 56  VHLAKQLHALLVVSGKTQSIF-LSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMIS 114

Query: 81  GFMKLGHKEKSLQLFN-----VMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
            + ++GH   ++  FN        Q + +++  +I          L+ G+++H  +L  G
Sbjct: 115 AYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRA-----CGNLDDGRKVHCLVLKLG 169

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 195
            + D  + +S ++ Y + G  + A  + + M   D    +A+ISG+   GK+ +A  VFD
Sbjct: 170 FECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFD 229

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
                                          +MR   V  D+ T++S+L  C  L  +  
Sbjct: 230 -------------------------------EMRFKSVSMDSVTISSLLPICVQLDDIIS 258

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G  +H +A K+G+  D+ V +AL++ Y+K G    A  +F+++KV D             
Sbjct: 259 GVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRD------------- 305

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                             ++SWNS++    QN  P+ AL ++  M+ + +  D  +L S+
Sbjct: 306 ------------------IVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSL 347

Query: 376 ISACANISS--------------------LELGEQVF-----------ARVTIIGLDSDQ 404
            S  A + +                    + LG  +            AR    GL    
Sbjct: 348 ASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKD 407

Query: 405 IIS-TSLVDFYCKCGY--DALALFNEMR-NTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
           +IS  SL+  Y + G   +A+ +++ MR  +G  P   T+ +IL+A    G +K+G K  
Sbjct: 408 VISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAH 467

Query: 461 DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
             +   + +  +I   +C+VD++ + G L +A++L  ++P ++ V  W++I+     HG 
Sbjct: 468 GQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS-WNAIIS---CHGL 522

Query: 521 KGLGRKVAERMIELDPENA----CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
            G G K  +   E+  E        ++ L S  + SG  ++      +M+E +
Sbjct: 523 HGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETY 575



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 187/432 (43%), Gaps = 55/432 (12%)

Query: 97  VMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
           V  +K +  +N +     K  LA     KQ+H+ ++V+G      L + L+N Y   GD 
Sbjct: 37  VENEKREIDFNRIFLYCTKVHLA-----KQLHALLVVSGKTQSIFLSAKLINRYAFLGDI 91

Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
             A    + ++  D +  +++IS YA  G  + A   F+    TS +             
Sbjct: 92  PHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQ------------ 139

Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
                              D  T   V+ AC   G L+ G++VH    K+G   DV +A+
Sbjct: 140 ------------------SDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFECDVYIAA 178

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL-- 334
           + +  YS+ G  S AC LF  + + D    N MI+ +   G++ +A  +F  M  KS+  
Sbjct: 179 SFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSM 238

Query: 335 --ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
             ++ +S++    Q    I  + +     KL L  D F   ++I+  A    L   E +F
Sbjct: 239 DSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIF 298

Query: 393 ARVTIIGLDSDQIISTSLVDFY--CKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
            ++ +     D +   SL+  +   K    AL ++N+M + GV P ++T  ++ S     
Sbjct: 299 NQMKV----RDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAEL 354

Query: 451 G--LVKEGQKWFDAMK-WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
           G  L       F   + W  H   +I   + ++D++A+ G ++ A  + E +P + DV  
Sbjct: 355 GNFLSSRSIHGFVTRRCWFLH---DIALGNAIIDMYAKLGFIDSARKVFEGLPVK-DVIS 410

Query: 508 WSSILRGCVAHG 519
           W+S++ G   +G
Sbjct: 411 WNSLITGYSQNG 422


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 170/606 (28%), Positives = 282/606 (46%), Gaps = 107/606 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C    ++  G++LH H +  G   + +P+   LLQMY +CG+  DA  +F+ M  +
Sbjct: 36  LVAACTKLQALEEGRRLHEHLIITG-FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIK 94

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           + F+W+++I  + + G  E ++ L+  M     + N  ++   + G   A +A L  G+ 
Sbjct: 95  DLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGC--ASVAGLADGRA 152

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  IL + +  D VL  SL+N+Y KC +   A +V   MK  +    +A+IS Y   G 
Sbjct: 153 IHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAG- 211

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLS 245
                                         E  EAL LF +M +   +E +A T A++L 
Sbjct: 212 ------------------------------EHAEALELFSRMSKVEAIEPNAYTFATILG 241

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A   LG LE G++VH H    G   +V+V +AL+  Y K G P +A K+F  +   + I 
Sbjct: 242 AVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVIS 301

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
             +MI  Y                               +Q+G+P EAL+LF    ++D+
Sbjct: 302 WTSMIAAY-------------------------------AQHGNPQEALNLF---KRMDV 327

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
                S +S ++ACA + +L+ G ++  RV    L S Q + TSL+  Y +CG       
Sbjct: 328 EPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQ-METSLLSMYARCGSLDDARR 386

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       AL ++ +M   G+    ITF ++L AC H  L
Sbjct: 387 VFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSL 446

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V + + +  ++   + + P +EHY CMVD+  R+G L +A  L+E MP++AD   W ++L
Sbjct: 447 VADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLL 506

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            GC  HGD   G + A ++ EL P     Y+ LS+++A +  ++ +  +R  M E+ V +
Sbjct: 507 SGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTR 566

Query: 573 LPGCSW 578
               S+
Sbjct: 567 PVAVSY 572



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 178/410 (43%), Gaps = 65/410 (15%)

Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
           MI+  +      +AL L+ +M   G++ D   + S+++AC+ L  LE G+++H H    G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
              D+ + +ALL  Y+K G   DA ++F  +++ D    +++I  Y+  GR E A  ++R
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 328 TM------PN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            M      PN       +   + + GL+ +G  I    L   + + D+  D  SL ++  
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLA-DGRAIHQRILASKVPQDDVLQD--SLLNMYL 177

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIIS-TSLVDFYCKCG--YDALALFNEMRNT-GV 433
            C         E V AR    G+ +  + S T+++  Y + G   +AL LF+ M     +
Sbjct: 178 KC--------DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAI 229

Query: 434 KPTIITFTAILSACD-----------------------------------HCGLVKEGQK 458
           +P   TF  IL A +                                    CG   E +K
Sbjct: 230 EPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARK 289

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
            FD+M  +  I      ++ M+  +A+ G   EA+NL ++M  E     +SS L  C   
Sbjct: 290 VFDSMTARNVIS-----WTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALL 344

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
           G    GR++  R++E +  +      L S++A  G  + +  + + M+ +
Sbjct: 345 GALDEGREIHHRVVEANLASPQMETSLLSMYARCGSLDDARRVFNRMKTR 394


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 173/596 (29%), Positives = 283/596 (47%), Gaps = 107/596 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
            KQLH  F++   L+ T   A+ ++ +Y       +ALL+F  +      +W ++I  F 
Sbjct: 24  AKQLHAQFIRTQSLSHT--SASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFT 81

Query: 84  KLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
                 ++L  F  M      P  N F  ++L S     DL    +G+ +H  I+  G+D
Sbjct: 82  DQSLFSRALASFVEMRASGRCPDHNVFP-SVLKSCTMMMDL---RFGESVHGFIVRLGMD 137

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            D   G++L+N+Y K    +S                                R+VF+  
Sbjct: 138 CDLYTGNALMNMYSKLLGIDSV-------------------------------RKVFELM 166

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                V +N++I+GY  +    +AL +  +M  + +  DA TL+SVL   S    +  GK
Sbjct: 167 PRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGK 226

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           ++HG+  + G+  DV + S+L+D Y+K                                 
Sbjct: 227 EIHGYVIRKGIDSDVYIGSSLVDMYAK-------------------------------SA 255

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
           RIED++ +F  +  +  ISWNS++ G  QNG   EAL LF  M    +R    + +SVI 
Sbjct: 256 RIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIP 315

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------- 418
           ACA++++L LG+Q+   V   G   +  I+++LVD Y KCG                   
Sbjct: 316 ACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVS 375

Query: 419 --------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                         ++A++LF EM+  GVKP  + F A+L+AC H GLV E   +F++M 
Sbjct: 376 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMT 435

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             Y ++ E+EHY+ + DL  RAG L EA + I +M  E    +WS++L  C  H +  L 
Sbjct: 436 KVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELA 495

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            KVAE++  +D EN  AY+ + +++A++G W++ + +R  +R+K + K P CSW +
Sbjct: 496 EKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIE 551



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 226/493 (45%), Gaps = 79/493 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+SC     +  G+ +H   ++ G ++  L   N L+ MY +         +F+ MPR+
Sbjct: 111 VLKSCTMMMDLRFGESVHGFIVRLG-MDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRK 169

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  S+N +I G+ + G  E +L++   M     + + F+ + ++  F  ++   +  GK+
Sbjct: 170 DVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIF--SEYVDVLKGKE 227

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH +++  G+D D  +GSSLV++Y K      + +V + +   D    ++L++GY   G+
Sbjct: 228 IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGR 287

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            N                               EAL LF +M    V   A   +SV+ A
Sbjct: 288 YN-------------------------------EALRLFRQMVSAKVRPGAVAFSSVIPA 316

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ L  L  GKQ+HG+  + G   ++ +ASAL+D YSK                      
Sbjct: 317 CAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSK---------------------- 354

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                    CG I+ A+ IF  M     +SW ++I+G + +G   EA+ LF  M +  ++
Sbjct: 355 ---------CGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 405

Query: 367 MDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGY--DALA 423
            ++ +  +V++AC+++  ++     F  +T + GL+ +     ++ D   + G   +A  
Sbjct: 406 PNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYD 465

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDL 482
             ++MR   V+PT   ++ +LS+C     ++  +K  + +   + ID E +  Y  M ++
Sbjct: 466 FISKMR---VEPTGSVWSTLLSSCSVHKNLELAEKVAEKI---FTIDSENMGAYVLMCNM 519

Query: 483 FARAGCLNEAVNL 495
           +A  G   E   L
Sbjct: 520 YASNGRWKEMAKL 532



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 124/262 (47%), Gaps = 21/262 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + ++ +C    ++H+GKQLH + L+ G     + IA+ L+ MY +CGN   A  +FD M
Sbjct: 310 FSSVIPACAHLATLHLGKQLHGYVLRGG-FGRNIFIASALVDMYSKCGNIQAARKIFDRM 368

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              +  SW A+I G    GH  +++ LF  M ++    N  ++  +++  +   L    +
Sbjct: 369 NLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAW 428

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYA 182
           G   +S   V GL+ +    +++ +L G+ G    A   ++ M+ EP     S L+S  +
Sbjct: 429 G-YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCS 487

Query: 183 NCGKMNDARRVFDR--TTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
               +  A +V ++  T D+ ++  +  M + Y SN    E   L  ++R+ G+ +    
Sbjct: 488 VHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKP-- 545

Query: 240 LASVLSACSSLGFLEHGKQVHG 261
                 ACS   ++E   + HG
Sbjct: 546 ------ACS---WIEMKNKTHG 558


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 246/463 (53%), Gaps = 80/463 (17%)

Query: 151 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 210
           G C D  + N +LNM  + D  C               DA ++FD   + +++ + ++I 
Sbjct: 68  GGCLDLFAWNILLNMYVKSDFLC---------------DASKLFDEMPERNTISFVTLIQ 112

Query: 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270
           GY  +    EA+ LF ++ R  VL +  T ASVL AC+++  L  G Q+H H  K+G+  
Sbjct: 113 GYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHS 171

Query: 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
           DV V++AL+D                               VY+ CGR+E++  +F   P
Sbjct: 172 DVFVSNALMD-------------------------------VYAKCGRMENSMELFAESP 200

Query: 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390
           +++ ++WN++IVG  Q G   +AL LF NM +  ++  + + +S + ACA++++LE G Q
Sbjct: 201 HRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ 260

Query: 391 VFARVTIIGLDSDQIISTSLVDFYCKCG-------------------------------- 418
           + +       D D +++ +L+D Y KCG                                
Sbjct: 261 IHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGL 320

Query: 419 -YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
             +AL +F++M+ T VKP  +TF  +LSAC + GL+ +GQ +F +M   + I+P IEHY+
Sbjct: 321 GREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYT 380

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
           CMV L  R G L++AV LI+++PF+  V +W ++L  CV H D  LGR  A+R++E++P+
Sbjct: 381 CMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQ 440

Query: 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +   ++ LS+++AT+  W+  + +R  M+ K V K PG SW +
Sbjct: 441 DKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIE 483



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 198/452 (43%), Gaps = 88/452 (19%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A  LQ C        GK LH   LK+G     L   N LL MY++     DA  LFDEMP
Sbjct: 42  ANALQDCIQKDEPSRGKGLHCEILKRGGC-LDLFAWNILLNMYVKSDFLCDASKLFDEMP 100

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMPQKNDFSWNMLISGFAKADLAALEY 123
            RN  S+  +I+G+ +     ++++LF      V+P  N F++  ++   A A +  L  
Sbjct: 101 ERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLP--NQFTFASVLQ--ACATMEGLNL 156

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G QIH H++  GL  D  + ++L+++Y KC                              
Sbjct: 157 GNQIHCHVIKIGLHSDVFVSNALMDVYAKC------------------------------ 186

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G+M ++  +F  +   + V WN++I G++   +  +AL LF  M    V     T +S 
Sbjct: 187 -GRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSA 245

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L AC+SL  LE G Q+H    K     D++V +AL+D Y+K G   DA  +F  +   D 
Sbjct: 246 LRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDE 305

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           +  N MI+                               G S +G   EAL +F  M + 
Sbjct: 306 VSWNAMIS-------------------------------GYSMHGLGREALRIFDKMQET 334

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC------KC 417
           +++ DK +   V+SACAN   L+ G+  F  +       D  I   +  + C      + 
Sbjct: 335 EVKPDKLTFVGVLSACANAGLLDQGQAYFTSMI-----QDHGIEPCIEHYTCMVWLLGRG 389

Query: 418 GY--DALALFNEMRNTGVKPTIITFTAILSAC 447
           G+   A+ L +E+     +P+++ + A+L AC
Sbjct: 390 GHLDKAVKLIDEI---PFQPSVMVWRALLGAC 418



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 135/254 (53%), Gaps = 38/254 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +LQ+C T   +++G Q+H H +K G L+S + ++N L+ +Y +CG   +++ LF E 
Sbjct: 141 FASVLQACATMEGLNLGNQIHCHVIKIG-LHSDVFVSNALMDVYAKCGRMENSMELFAES 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMP---QKNDFSWNMLISGFAKADLAALEY 123
           P RN  +WN +I G ++LG  EK+L+LF N++    Q  + +++  +   A A LAALE 
Sbjct: 200 PHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALR--ACASLAALEP 257

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G QIHS  +    D D V+ ++L+++Y KCG    A  V ++M + D+   +A+ISGY+ 
Sbjct: 258 GLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSM 317

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G   +A R+FD                               KM+   V  D  T   V
Sbjct: 318 HGLGREALRIFD-------------------------------KMQETEVKPDKLTFVGV 346

Query: 244 LSACSSLGFLEHGK 257
           LSAC++ G L+ G+
Sbjct: 347 LSACANAGLLDQGQ 360


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 181/611 (29%), Positives = 282/611 (46%), Gaps = 119/611 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD----- 65
           LLQ C    S+   K +H     +G L  T     RL+ +Y + G+   A  LFD     
Sbjct: 31  LLQCCT---SLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHH 87

Query: 66  -----EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKA 116
                + P  N F  N M+  +   G   +++ L+  M +     N+F++  ++   A +
Sbjct: 88  HHGHTQAP--NSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCA-S 144

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           +L A+ +G+ +H  ++  G       GS L                         F  +A
Sbjct: 145 ELGAV-FGEVVHGQVVRTGF------GSDL-------------------------FVEAA 172

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+  YA CG++ DA  VFDR      V W +MI+ Y       +AL+LF KM+  G L D
Sbjct: 173 LVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGD 232

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
             T  SV SA   LG       VHG+A   G I DV V                      
Sbjct: 233 EITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVG--------------------- 271

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                     N+++ +Y+ CG +E A+ +F  M  ++ ISWNSM+ G +QNG P +AL L
Sbjct: 272 ----------NSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSL 321

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M   +   +  +   ++SAC+ + S  LG ++   V    +D D  +  +++D Y K
Sbjct: 322 FNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMK 381

Query: 417 C-----------------------------------GYDALALFNEMRNTGVKPTIITFT 441
           C                                   G +AL LF+ M+  GV+P  ITFT
Sbjct: 382 CGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFT 441

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           +ILSAC H GL+ EG+K F  M  +  + PE++HY+CMVD+  RAG LNEA  LI+++P 
Sbjct: 442 SILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPS 500

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
                +W ++L  C  HG+  LG   A  + +L+PE+   Y+ +S+I+A S +W++  ++
Sbjct: 501 RPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMV 560

Query: 562 RDIMREKHVGK 572
           R  M+ + + K
Sbjct: 561 RQNMKSRGLKK 571


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  261 bits (668), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 173/611 (28%), Positives = 300/611 (49%), Gaps = 103/611 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL       S++   Q+H H +K G  +STL + N LL  Y +  +   A  LF  M
Sbjct: 142 LATLLSGFTEFESVNEVAQVHGHVVKVG-YDSTLMVCNSLLDSYCKTRSLGLACHLFKHM 200

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
             ++  ++NA++ G+ K G    ++ LF  M     + ++F++  +++   + D   +E+
Sbjct: 201 AEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMD--DIEF 258

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+Q+HS ++                   KC      N V N+      F  +AL+  Y+ 
Sbjct: 259 GQQVHSFVV-------------------KC------NFVWNV------FVANALLDFYSK 287

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
             ++ +AR++F    +   + +N +I+    N    E+L LF +++           A++
Sbjct: 288 HDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATL 347

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LS  ++   LE G+Q+H  A     I +V+V ++L+D Y+K                   
Sbjct: 348 LSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAK------------------- 388

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       C +  +A  IF  + ++S + W ++I G  Q G   + L LF  M++ 
Sbjct: 389 ------------CDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRA 436

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDA 421
            +  D  + AS++ ACAN++SL LG+Q+ +R+   G  S+    ++LVD Y KCG   +A
Sbjct: 437 KIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEA 496

Query: 422 LALFNEM--RNT-----------------------------GVKPTIITFTAILSACDHC 450
           L +F EM  RN+                             G++P  ++F +IL AC HC
Sbjct: 497 LQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHC 556

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           GLV+EG ++F++M   Y ++P  EHY+ MVD+  R+G  +EA  L+ +MPFE D  MWSS
Sbjct: 557 GLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSS 616

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
           IL  C  H ++ L  K A+++  +    +A  Y+ +S+I+A +GEW+    ++  +RE+ 
Sbjct: 617 ILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERG 676

Query: 570 VGKLPGCSWAD 580
           + K+P  SW +
Sbjct: 677 IRKVPAYSWVE 687



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 145/545 (26%), Positives = 249/545 (45%), Gaps = 85/545 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N  +Q +++ G+   A  LFDEMP +N  S N MI G++K G+   +  LF+ M Q++  
Sbjct: 46  NFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVV 105

Query: 105 SWNMLISGFAKAD--LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 162
           +W MLI G+A+ +  L A      +  H    G+  D +   +L  L     +F S N+V
Sbjct: 106 TWTMLIGGYAQHNRFLEAFNLFADMCRH----GMVPDHI---TLATLLSGFTEFESVNEV 158

Query: 163 L----NMMKEPDDFCL---SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 215
                +++K   D  L   ++L+  Y     +  A  +F    +  +V +N++++GY   
Sbjct: 159 AQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKE 218

Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
             + +A+ LF KM+  G      T A+VL+A   +  +E G+QVH    K   + +V VA
Sbjct: 219 GFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVA 278

Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
           +ALLD YSK     +A KLF E+   D I  N +IT  +  GR+E++  +FR +      
Sbjct: 279 NALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFREL------ 332

Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
                                     + D R  +F  A+++S  AN  +LE+G Q+ ++ 
Sbjct: 333 -----------------------QFTRFDRR--QFPFATLLSIAANSLNLEMGRQIHSQA 367

Query: 396 TIIGLDSDQIISTSLVDFYCKC--------------------------GY-------DAL 422
            +    S+ ++  SLVD Y KC                          GY       D L
Sbjct: 368 IVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGL 427

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LF EM    +     T+ +IL AC +   +  G++    +     +   +   S +VD+
Sbjct: 428 KLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLS-NVFSGSALVDM 486

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENAC 540
           +A+ G + EA+ + ++MP    V  W++++     +GD G   +  E+MI   L P N+ 
Sbjct: 487 YAKCGSIKEALQMFQEMPVRNSVS-WNALISAYAQNGDGGHALRSFEQMIHSGLQP-NSV 544

Query: 541 AYIQL 545
           +++ +
Sbjct: 545 SFLSI 549



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 135/302 (44%), Gaps = 46/302 (15%)

Query: 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 313
            H + V     K G   +    +  + T+ +RG    A KLF E+   + I  NTMI  Y
Sbjct: 24  RHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGY 83

Query: 314 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373
              G +  A+ +F +M  +S+++W  +I G +Q+   +EA +LF +M +  +  D  +LA
Sbjct: 84  LKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLA 143

Query: 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK----------------- 416
           +++S      S+    QV   V  +G DS  ++  SL+D YCK                 
Sbjct: 144 TLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEK 203

Query: 417 ---------CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460
                     GY       DA+ LF +M++ G +P+  TF A+L+A      ++ GQ+  
Sbjct: 204 DNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVH 263

Query: 461 DAM-----KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
             +      W   +       + ++D +++   + EA  L  +MP E D G+  ++L  C
Sbjct: 264 SFVVKCNFVWNVFVA------NALLDFYSKHDRIVEARKLFYEMP-EVD-GISYNVLITC 315

Query: 516 VA 517
            A
Sbjct: 316 CA 317


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  261 bits (668), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 167/605 (27%), Positives = 293/605 (48%), Gaps = 94/605 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+    +   + +H H  + G L++ L ++  L+ +Y +C +   A  +F  MP R
Sbjct: 135 VLKACSALLDLRSARAVHCHAARAG-LHADLFVSTALVDVYAKCASFRHAATVFRRMPAR 193

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK-ADLAALEYGKQIHS 129
           +  +WNAM+ G+   G    ++    +M   +  + + L++     A   AL  G+ +H+
Sbjct: 194 DVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHA 253

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
           +         SV   SL          +  + VL           +AL+  YA CG +  
Sbjct: 254 Y---------SVRACSL---------HDHKDGVL---------VGTALLDMYAKCGHLVY 286

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVLSACS 248
           A RVF+     + V W++++ G++      EA  LF  M   G+     +++AS L AC+
Sbjct: 287 ASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACA 346

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           +L  L  GKQ+H    K G+  D+                                  N+
Sbjct: 347 NLSDLCLGKQLHALLAKSGLHTDLTAG-------------------------------NS 375

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           ++++Y+  G I+ A  +F  M  K  +S+++++ G  QNG   EA  +F  M   +++ D
Sbjct: 376 LLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPD 435

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------- 419
             ++ S+I AC+++++L+ G+     V + G+ S+  I  +L+D Y KCG          
Sbjct: 436 VATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFD 495

Query: 420 ------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +A ALF +M++   +P  +TF  ++SAC H GLV E
Sbjct: 496 VMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTE 555

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G++WF  M  +Y I P +EHY  MVDL AR G L+EA   I+ MP +ADV +W ++L  C
Sbjct: 556 GKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGAC 615

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
             H +  LG++V+  + +L PE    ++ LS+IF+ +G +++++ +R I +E+   K PG
Sbjct: 616 RVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPG 675

Query: 576 CSWAD 580
           CSW +
Sbjct: 676 CSWIE 680



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 124/531 (23%), Positives = 225/531 (42%), Gaps = 113/531 (21%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG----HKEKSLQLFNVMPQKNDFSWN 107
           M CG+ + A  LFD++P      +NA+I  +   G     +         +PQ N++++ 
Sbjct: 74  MICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFP 133

Query: 108 MLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
            ++   A + L  L   + +H H    GL  D  + ++LV++Y KC  F  A  V   M 
Sbjct: 134 FVLK--ACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMP 191

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
             D    +A+++GYA  GK +                             DT A LL   
Sbjct: 192 ARDVVAWNAMLAGYALHGKYS-----------------------------DTIACLL--- 219

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD----VIVASALLDTYS 283
           + ++    +ASTL ++L   +  G L  G+ VH ++ +   + D    V+V +ALLD Y+
Sbjct: 220 LMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYA 279

Query: 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 343
           K                               CG +  A  +F  M  ++ ++W++++ G
Sbjct: 280 K-------------------------------CGHLVYASRVFEAMAVRNEVTWSALVGG 308

Query: 344 LSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
               G  +EA  LF +M    L  +   S+AS + ACAN+S L LG+Q+ A +   GL +
Sbjct: 309 FVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHT 368

Query: 403 DQIISTSLVDFYCKCGY---------------------------------DALALFNEMR 429
           D     SL+  Y K G                                  +A  +F +M+
Sbjct: 369 DLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQ 428

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
              V+P + T  +++ AC H   ++ G+    ++  +  I  E    + ++D++A+ G +
Sbjct: 429 ACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGRI 487

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540
           + +  + + MP   D+  W++++ G   +G  GLG++     +++    AC
Sbjct: 488 DLSRQIFDVMPAR-DIVSWNTMIAG---YGIHGLGKEATALFLDMK-HQAC 533



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 218/506 (43%), Gaps = 86/506 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLH--------LHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           L  LL     H ++  G+ +H        LH  K G+L     +   LL MY +CG+   
Sbjct: 232 LVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVL-----VGTALLDMYAKCGHLVY 286

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGF-AKA 116
           A  +F+ M  RN  +W+A++ GF+  G   ++  LF  M  +     S   + S   A A
Sbjct: 287 ASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACA 346

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           +L+ L  GKQ+H+ +  +GL  D   G+SL+++Y K G  + A  + + M   D    SA
Sbjct: 347 NLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSA 406

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+SGY   GK ++A RV                               F KM+   V  D
Sbjct: 407 LVSGYVQNGKADEAFRV-------------------------------FRKMQACNVQPD 435

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
            +T+ S++ ACS L  L+HGK  HG     G+  +  + +AL+D Y+K G    + ++F 
Sbjct: 436 VATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFD 495

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            +   D +  NTMI  Y                           I GL +     EA  L
Sbjct: 496 VMPARDIVSWNTMIAGYG--------------------------IHGLGK-----EATAL 524

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYC 415
           F +M       D  +   +ISAC++   +  G++ F  +    G+         +VD   
Sbjct: 525 FLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLA 584

Query: 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IE 474
           + G+   A +  ++   +K  +  + A+L AC     +  G K   +M  Q  + PE   
Sbjct: 585 RGGFLDEA-YQFIQGMPLKADVRVWGALLGACRVHKNIDLG-KQVSSMIQQ--LGPEGTG 640

Query: 475 HYSCMVDLFARAGCLNEA--VNLIEQ 498
           ++  + ++F+ AG  +EA  V +I++
Sbjct: 641 NFVLLSNIFSAAGRFDEAAEVRIIQK 666


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  261 bits (668), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 176/610 (28%), Positives = 290/610 (47%), Gaps = 107/610 (17%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C+    +  GK +H   +    L + L ++N +  MY RCG   +A  +FD    R+  S
Sbjct: 112 CSRALDVRTGKAVHAMVVLG-GLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVS 170

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG------------FAKADLAALE 122
           WNA++ G+++ G +E++L++F++M  ++   WN    G             A  D+    
Sbjct: 171 WNALLSGYVRAGAREETLEVFSLMC-RHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGR 229

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
             + +H  ++  GLD D  L S+++++Y K G   +A  +   + +P+   L+A+I+G+ 
Sbjct: 230 IAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFC 289

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
                + AR                            EAL L+ +++  G+     + +S
Sbjct: 290 REEAADVAR----------------------------EALGLYSELQSRGMQPSEFSFSS 321

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L AC+  G    GKQ+HG   K     DV + SAL+D YS  G   D  + F       
Sbjct: 322 ILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCF------- 374

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                                   R++P + ++ W S+I G  QN    EAL LF    +
Sbjct: 375 ------------------------RSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVR 410

Query: 363 LDLRMDKFSLASVISACANISSLELGEQV--------FARVTIIG--------------- 399
             LR D F+++SV++ACA+++    GEQ+        F R T +G               
Sbjct: 411 CGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDA 470

Query: 400 -------LDSDQIISTSLV---DFYCKCGYDALALFNEMRNTGV-KPTIITFTAILSACD 448
                  ++S  ++S S V     +  C  DAL +FNEM +  V  P  ITF +IL+AC 
Sbjct: 471 ATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILTACS 530

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H GLV EG +++  M  +Y + P I+H +C+VDL  RAG L +A   I    F  D  +W
Sbjct: 531 HGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVW 590

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            S+L  C  HGD   G+ VA+++++L+P ++ +Y+ L +++  +GE   +S  RD+M+E+
Sbjct: 591 RSLLASCRIHGDMERGQLVADKIMDLEPTSSASYVILYNMYLDAGELSSASKTRDLMKER 650

Query: 569 HVGKLPGCSW 578
            V K PG SW
Sbjct: 651 GVKKEPGLSW 660



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 131/560 (23%), Positives = 226/560 (40%), Gaps = 121/560 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR--CGNPTDALLLFDEMP 68
           LL+SC     +     +H H L +   N++L + N LL  Y R   G P  A  L DEMP
Sbjct: 8   LLRSCAALPHV---AAVHAH-LARAHPNASLFLRNCLLASYCRLGVGAPLHAARLLDEMP 63

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA-------L 121
           RRN  S+N +I  + + G    SL  F         +W  ++  F  A   A       +
Sbjct: 64  RRNAVSYNLVIVAYSRAGLPALSLATF-----ARARAWARVVDRFTYAAALAACSRALDV 118

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             GK +H+ +++ GL     L +S+ ++Y +CG+   A +V +  +E DD   +AL+SGY
Sbjct: 119 RTGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGY 178

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
              G                                  E L +F  M R+G+  ++  L 
Sbjct: 179 VRAGARE-------------------------------ETLEVFSLMCRHGLGWNSFALG 207

Query: 242 SVLSAC---------SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           S++  C           +G     + VHG   K G+  D+ +ASA++D Y+KRG  ++A 
Sbjct: 208 SIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAV 267

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
            LF  +   + I+LN MI  +      E+A  + R                        E
Sbjct: 268 ALFKSVPDPNVIVLNAMIAGFCR----EEAADVAR------------------------E 299

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           AL L+  +    ++  +FS +S++ AC        G+Q+  +V       D  I ++L+D
Sbjct: 300 ALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALID 359

Query: 413 FYCKCG---------------------------------YDALALFNEMRNTGVKPTIIT 439
            Y   G                                  +AL LF E    G++P +  
Sbjct: 360 LYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPDVFA 419

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
            +++++AC    + + G++    +  +   +      +  + + AR+G ++ A    ++M
Sbjct: 420 MSSVMNACASLAVARTGEQ-IQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEM 478

Query: 500 PFEADVGMWSSILRGCVAHG 519
               DV  WS+++     HG
Sbjct: 479 E-SRDVVSWSAVISSHAHHG 497


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  261 bits (668), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 174/591 (29%), Positives = 281/591 (47%), Gaps = 93/591 (15%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G QL    ++ G+ ++  P A+ LL +Y +CG   DA  +FD MP RN  SWNA+I G+
Sbjct: 109 LGAQLQSFSVRCGLADNVFP-ASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGY 167

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVL 142
                  ++++LF  M +        +  G   A L A   G + +S             
Sbjct: 168 TDSRKPAEAMELFLEMQRVGS-----VPDGTTFAVLLATIAGPRWYS------------- 209

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
              +  L+GK   + SA  ++          L+A I+ Y+ C  + D+R++FD       
Sbjct: 210 --LMRQLHGKIVKYGSALGLV---------ALNAAITAYSQCDALADSRKIFDGIESRDL 258

Query: 203 VMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFL-EHGKQVH 260
           + WNSM+  Y  +  D EA+  F +M R +G+  D  +  S +S CS  G   + G+ +H
Sbjct: 259 ISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDDQQGRSIH 318

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
               K G+     V +A++  Y++    +D C +                         E
Sbjct: 319 SLVIKFGLEGVTPVCNAMIAMYTRF---ADNCMM-------------------------E 350

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
           DA + F ++  K  +SWNSM+ G S +G   +AL  F  M   ++R D+F L++ + +C+
Sbjct: 351 DAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCS 410

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALA--------------- 423
           +++ L LG QV + V   G  S+  +S+SL+  Y KCG   DA                 
Sbjct: 411 DLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPWNS 470

Query: 424 ----------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                           LFNEM +  V    +TF A+++A  H GLV EG +  + M+ +Y
Sbjct: 471 MMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETRY 530

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
            I   +EHY+C VDL+ RAG L++A  LIE MPF+ D  +W ++L  C  HG+  L   V
Sbjct: 531 KIPMRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASDV 590

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
           A  +   +P     Y+ LSS+++  G W   + ++ +MR + + K+PG SW
Sbjct: 591 ARHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQKVMRNRALSKIPGWSW 641



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 135/588 (22%), Positives = 241/588 (40%), Gaps = 91/588 (15%)

Query: 18  HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA 77
           HH++   K  H   LK G  +S  P  N+LL  Y   G    A  +FDE+P  +  SWN+
Sbjct: 6   HHALAAAKS-HATLLKSGA-SSPTPW-NQLLTAYSATGLAA-ARRVFDEIPHPDAASWNS 61

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-------KADLAALEYGKQIHSH 130
           ++   +  G    + +L   M  +      +  S FA        A     E G Q+ S 
Sbjct: 62  LLAAHVAAGAHRDAWRLLRAMHAR-----GLAASTFALGSALRSAAAARRPELGAQLQSF 116

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +  GL  +    S+L+++Y KCG    A +V + M   +    +A+I+GY       D+
Sbjct: 117 SVRCGLADNVFPASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGY------TDS 170

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           R+                           EA+ LF +M+R G + D +T A +L+  +  
Sbjct: 171 RK-------------------------PAEAMELFLEMQRVGSVPDGTTFAVLLATIAGP 205

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
            +    +Q+HG   K G    ++  +A +  YS+    +D+ K+F  ++  D I  N+M+
Sbjct: 206 RWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDGIESRDLISWNSML 265

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLI-----SWNSMIVGLS------QNGSPIEALDLFCN 359
             Y+  G  ++A   F  M  +S I     S+ S I   S      Q G  I +L +   
Sbjct: 266 GAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDDQQGRSIHSLVI--- 322

Query: 360 MNKLDLRMDKFSLASVISAC----------ANISSLELGEQVFARVTIIGLDSDQIISTS 409
                    KF L  V   C          A+   +E     F+ +       D +   S
Sbjct: 323 ---------KFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVF----KDAVSWNS 369

Query: 410 LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
           ++  Y   G   DAL  F  MR   ++      +A L +C    +++ G++   ++  Q 
Sbjct: 370 MLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQ-VHSLVVQS 428

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
                    S ++ ++++ G L +A    E+    + V  W+S++ G   HG       +
Sbjct: 429 GFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVP-WNSMMFGYAQHGQAQTVTDL 487

Query: 528 AERMIELD-PENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
              M++L+ P +   ++ L + ++  G  ++ S I + M  ++  K+P
Sbjct: 488 FNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETRY--KIP 533



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 105/221 (47%), Gaps = 25/221 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L+SC+    + +G+Q+H   ++ G  ++   +++ L+ MY +CG   DA   F+E 
Sbjct: 402 LSAALRSCSDLAVLRLGRQVHSLVVQSGFASNDF-VSSSLIFMYSKCGVLGDARKSFEEA 460

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
            + +   WN+M+ G+ + G  +    LFN M       +  ++  LI+ ++   L  ++ 
Sbjct: 461 DKSSSVPWNSMMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGL--VDE 518

Query: 124 GKQIHSHILVNGLDFDSVLGSSL------VNLYGKCGDFNSANQVLNMMK-EPDDFCLSA 176
           G +I     +N ++    +   +      V+LYG+ G  + A +++  M  +PD      
Sbjct: 519 GSEI-----LNTMETRYKIPMRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAIVWMT 573

Query: 177 LISGYANCGKM----NDARRVF--DRTTDTSSVMWNSMISG 211
           L+      G M    + AR +F  +    ++ V+ +SM SG
Sbjct: 574 LLGACRIHGNMELASDVARHLFVAEPRQHSTYVLLSSMYSG 614


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  261 bits (667), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 164/573 (28%), Positives = 296/573 (51%), Gaps = 79/573 (13%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLI 110
           GN   A  +F+ +   + F +N M++ + K G   K L LF  + +     + F++  ++
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 204

Query: 111 SGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 170
              A   L  +  G+++   I+  G+D D+ + +SL+++Y +  +               
Sbjct: 205 K--AIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSN--------------- 247

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
                           + +A+++FD  T   SV WN MISGY+      +A+  F +M++
Sbjct: 248 ----------------VENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQ 291

Query: 231 NGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMP 288
            G  + D +T+ S LSAC++L  LE G ++H +  K +G      + +ALLD Y+K G  
Sbjct: 292 EGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT--TRIDNALLDMYAKCGCL 349

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
           + A  +F E+ + + I   +MI+ Y +CG + +A+ +F   P + ++ W +MI G  Q  
Sbjct: 350 NIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 409

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              +A+ LF  M    ++ DKF++ ++++ CA + +LE G+ +   +    +  D ++ T
Sbjct: 410 HFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT 469

Query: 409 SLVDFYCKCG---------------------------------YDALALFNEMRNTGVKP 435
           +L++ Y KCG                                  +AL LF+EM   G KP
Sbjct: 470 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKP 529

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
             ITF  +LSAC H GLV+EG+++F++MK  + I+P++EHY C++DL  RAG L+EA  L
Sbjct: 530 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 589

Query: 496 IEQMPF---EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
           I+++P    E  V ++ ++L  C  H +  +G ++A+++  ++  ++  +  L++I+A+ 
Sbjct: 590 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASV 649

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSW--ADGIA 583
             WE +  +R  M+E  V K+PGCS    DGI 
Sbjct: 650 DRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIV 682



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 169/410 (41%), Gaps = 113/410 (27%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +G ++H +  K+  L  T  I N LL MY +CG    A  +FDEM  +N
Sbjct: 306 LSACTALKNLELGDEIHNYVRKE--LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKN 363

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---------------- 115
              W +MI G++  G   ++  LF+  P ++   W  +I+G+ +                
Sbjct: 364 VICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQI 423

Query: 116 -----------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
                            A L ALE GK IH ++  N +  D V+G++L+ +Y KCG  + 
Sbjct: 424 QKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDK 483

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           + ++   +++ D    +++I G A  GK                                
Sbjct: 484 SLEIFYELEDKDTASWTSIICGLAMNGKT------------------------------- 512

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-------KQVHGHACKV---GV 268
           +EAL LF +M R G   D  T   VLSACS  G +E G       K+VH    KV   G 
Sbjct: 513 SEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGC 572

Query: 269 IDDVIVASALLDTYSK--RGMPSDACK--------LFSELKVY----------------- 301
           + D++  + LLD   +  + +P + C+        L S  +++                 
Sbjct: 573 VIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIE 632

Query: 302 --DTILLNTMITVYSSCGRIEDAKHIFR--------TMPNKSLISWNSMI 341
             D+ +   +  +Y+S  R EDAK + R         MP  SLI  + ++
Sbjct: 633 SCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIV 682



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 189/433 (43%), Gaps = 80/433 (18%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQI S I   GL+                GD ++ N+++        FC  + +      
Sbjct: 114 KQIQSQIFRIGLE----------------GDRDTINKLMA-------FCADSSL------ 144

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G +  A ++F+   D S  ++N M+  Y       + LLLF ++R +G+  D  T   VL
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 204

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            A   L  +  G++V G   K G+  D  V ++L+D Y +     +A KLF E+   D++
Sbjct: 205 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSV 264

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N MI+ Y  C R EDA + FR M  +              N  P EA           
Sbjct: 265 SWNVMISGYVRCRRFEDAINTFREMQQEG-------------NEKPDEA----------- 300

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGYDALA 423
                 ++ S +SAC  + +LELG+++   V   +G  +   I  +L+D Y KCG   +A
Sbjct: 301 ------TVVSTLSACTALKNLELGDEIHNYVRKELGFTTR--IDNALLDMYAKCGCLNIA 352

Query: 424 --LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
             +F+EM    V    I +T+++S   +CG ++E +  FD    +     ++  ++ M++
Sbjct: 353 RNIFDEMSMKNV----ICWTSMISGYINCGDLREARDLFDKSPVR-----DVVLWTAMIN 403

Query: 482 LFARAGCLNEAVNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKVA----ERMIEL 534
            + +    ++AV L  +M  +    D     ++L GC   G    G+ +     E  I +
Sbjct: 404 GYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITM 463

Query: 535 DPENACAYIQLSS 547
           D     A I++ S
Sbjct: 464 DVVVGTALIEMYS 476


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 186/636 (29%), Positives = 305/636 (47%), Gaps = 105/636 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C     I VGK +H   +K   L+  + + N L+ MY +CG   DA ++F   
Sbjct: 292 LATVLPVCARDREIGVGKGVHGLAMKLS-LDKEVVVNNALMDMYSKCGCINDAQVIFKLN 350

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
             +N  SWN M+ GF   G   K+  L             ML  G    DL A E     
Sbjct: 351 NNKNVVSWNTMVGGFSAAGDIHKTFDLLR----------QMLAGG---GDLRADEV---- 393

Query: 128 HSHILVNGLD--FDSVLGSSLVNL--YGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
               ++N +   F+  +  +L  L  Y    +F   N+++           +A ++ YA 
Sbjct: 394 ---TILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELV----------ANAFVASYAK 440

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG ++ A RVF      +   WN++I GY  +++   +L  + +M+ +G+L D  T+ S+
Sbjct: 441 CGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSL 500

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           LSACS +  L+ GK+VHG          +I+ + L                       D+
Sbjct: 501 LSACSQIKSLKLGKEVHG----------LIIRNRL---------------------ERDS 529

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
            +  +++++Y  CG +  A  +F  M +K+L+SWN+M+ G  QNG P  AL LF  M   
Sbjct: 530 FVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLY 589

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
            ++  + S+ SV  AC+ + SL LG +         L+ +  I+ S++D Y K G     
Sbjct: 590 GVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMES 649

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                        +A+ LF EM+ TG  P  +TF  +L+AC+H 
Sbjct: 650 FKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHS 709

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL-IEQMPFEADVGMWS 509
           GLV EG  + D MK  + ++P ++HY+C++D+  RAG L+EA+ +  E+M  E  VG+W+
Sbjct: 710 GLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWN 769

Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
            +L  C  H +  +G K+A ++   +PE    Y+ LS+++A SG+W++   +R  M+E  
Sbjct: 770 FLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMS 829

Query: 570 VGKLPGCSWAD--GIAFNCWFLDTMFLQLANFDEIK 603
           + K  GCSW +  G  F+    ++    L  F+EIK
Sbjct: 830 LRKDAGCSWIELNGKVFSFVAGES---SLDGFEEIK 862



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 133/565 (23%), Positives = 247/565 (43%), Gaps = 111/565 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C     + VG  +H   +K  ++     ++N L+  Y   G+ +DAL +F  MP R
Sbjct: 190 VVKACAGVSEVQVGLAVHGLVVKTRLVEDVF-VSNALVSFYGTNGSVSDALRVFKIMPER 248

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-FSWNMLISGFAK-----ADLAALEYG 124
           N  SWN+MI  F   G  E+   L   M +K+D  ++   ++  A      A    +  G
Sbjct: 249 NLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVG 308

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           K +H   +   LD + V+ ++L+++Y KCG                  C+          
Sbjct: 309 KGVHGLAMKLSLDKEVVVNNALMDMYSKCG------------------CI---------- 340

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG--VLEDASTLAS 242
              NDA+ +F    + + V WN+M+ G+ +  +  +   L  +M   G  +  D  T+ +
Sbjct: 341 ---NDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILN 397

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            +  C     L + K++H ++ K   + ++ +VA+A + +Y+K                 
Sbjct: 398 AVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAK----------------- 440

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
                         CG +  A  +F ++ +K++ SWN++I G SQ+  P  +LD +  M 
Sbjct: 441 --------------CGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMK 486

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
              L  D F++ S++SAC+ I SL+LG++V   +    L+ D  +  SL+  Y  CG   
Sbjct: 487 SSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELS 546

Query: 419 -----YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACD 448
                +D                         AL+LF +M   GV+P  I+  ++  AC 
Sbjct: 547 TAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACS 606

Query: 449 HCGLVKEGQKWFD-AMKWQYHIDPEIEHYSC-MVDLFARAGCLNEAVNLIEQMPFEADVG 506
               ++ G++    A+K     +  I   +C ++D++A+ G + E+  +   +  E  V 
Sbjct: 607 LLPSLRLGREAHGYALKCLLEDNAFI---ACSVIDMYAKNGSVMESFKVFNGLK-ERSVA 662

Query: 507 MWSSILRGCVAHGDKGLGRKVAERM 531
            W++++ G   HG      K+ E M
Sbjct: 663 SWNAMVMGYGIHGRAKEAIKLFEEM 687



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 130/552 (23%), Positives = 237/552 (42%), Gaps = 111/552 (20%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           Q+      I +G+++H    +   L++   +  R++ MY  CG+P D+  +FD + ++N 
Sbjct: 89  QASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNL 148

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALEYGKQI 127
           F WNA+I  + +       L++F  M  +     ++F++  ++   A A ++ ++ G  +
Sbjct: 149 FQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVK--ACAGVSEVQVGLAV 206

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H  ++   L  D  + ++LV+ YG  G                                +
Sbjct: 207 HGLVVKTRLVEDVFVSNALVSFYGTNGS-------------------------------V 235

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLEDASTLASV 243
           +DA RVF    + + V WNSMI  +  N    E  LL  +M           D +TLA+V
Sbjct: 236 SDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATV 295

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L  C+    +  GK VHG A K+ +  +V+V +AL+D YSK                   
Sbjct: 296 LPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSK------------------- 336

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM--N 361
                       CG I DA+ IF+   NK+++SWN+M+ G S  G   +  DL   M   
Sbjct: 337 ------------CGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAG 384

Query: 362 KLDLRMDKFSLASVISACANISSL-ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
             DLR D+ ++ + +  C   S L  L E     +    + ++++++ + V  Y KCG  
Sbjct: 385 GGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSL 444

Query: 419 -----------------YDALA--------------LFNEMRNTGVKPTIITFTAILSAC 447
                            ++AL                + +M+++G+ P + T  ++LSAC
Sbjct: 445 SYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSAC 504

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
                +K G K    +  +  ++ +   Y  ++ L+   G L+ A  L + M  +  V  
Sbjct: 505 SQIKSLKLG-KEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVS- 562

Query: 508 WSSILRGCVAHG 519
           W++++ G + +G
Sbjct: 563 WNTMVNGYLQNG 574


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 165/606 (27%), Positives = 299/606 (49%), Gaps = 107/606 (17%)

Query: 13  QSCNTHHSIHV--GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           Q+C      H+  G  L L F K G   + + +   L+ M+ + G+      +FD +  R
Sbjct: 160 QACFASELFHLAGGAVLGLVF-KLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFER 218

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQ 126
               W  +I  + + G+ +++++LF  M     Q + ++ + ++S  A  +L +   G+Q
Sbjct: 219 TVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLS--ACTELGSFRLGQQ 276

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +HS  L  GL+ DS +   LV++Y K  +  S                            
Sbjct: 277 LHSLALRLGLESDSCVSCGLVDMYAKSHNGQS---------------------------- 308

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYIS-NNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           +++AR VF+R    + + W +++SGY+   ++D + ++LF KM   G+  +  T +S+L 
Sbjct: 309 LHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLK 368

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           AC++LG  + G+Q+H H  K  + D  +V +AL                           
Sbjct: 369 ACANLGDQDSGRQIHTHCVKSNLADLNVVGNAL--------------------------- 401

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
               +++Y+  G IE+A+H F  +  K+++S++  + G  ++ +  +       + +++L
Sbjct: 402 ----VSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDY-----QIERMEL 452

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
            +  F+  S+ISA A++  L  G+++ A     G  SD+ I  SLV  Y +CGY      
Sbjct: 453 GISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQ 512

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       AL LF++M   GVKP  +T+ A+LSAC H GL
Sbjct: 513 VFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGL 572

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           VKEG++ F  M+  + + P +EHY+CMVDL  R+G + +A++ I +MP + D  +W ++L
Sbjct: 573 VKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLL 632

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H +  +G   A  +I+L+P++   Y+ LS+++A +G W++ + IR +MR+K++ K
Sbjct: 633 GACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMK 692

Query: 573 LPGCSW 578
             G SW
Sbjct: 693 EKGLSW 698



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 145/590 (24%), Positives = 256/590 (43%), Gaps = 97/590 (16%)

Query: 21  IHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNA 77
           IH+G+ L  H L+ G +L +   +AN LL +Y +C     A  +FD MP   R+  SW A
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTA 122

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           M     + G + ++L+LF    ++        +    +A  A+                +
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFAS----------------E 166

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
              + G +++ L  K G + +           D     ALI  +A  G +   RRVFD  
Sbjct: 167 LFHLAGGAVLGLVFKLGFWGT-----------DVSVGCALIDMFAKNGDLVAMRRVFDGL 215

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
            + + V+W  +I+ Y  +    EA+ LF  M  NG   D  TL+S+LSAC+ LG    G+
Sbjct: 216 FERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQ 275

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           Q+H  A ++G+  D  V+  L+D Y+K                             S  G
Sbjct: 276 QLHSLALRLGLESDSCVSCGLVDMYAK-----------------------------SHNG 306

Query: 318 R-IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI-EALDLFCNMNKLDLRMDKFSLASV 375
           + + +A+ +F  MP  ++++W +++ G  Q GS   + + LFC M    +R +  + +S+
Sbjct: 307 QSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSM 366

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YDALALFNE 427
           + ACAN+   + G Q+        L    ++  +LV  Y + G        +D L   N 
Sbjct: 367 LKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNM 426

Query: 428 MRNTG--------------------VKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQ 466
           +  +G                    +  +  TF +++SA    G++ +GQ+    ++K  
Sbjct: 427 VSFSGNLDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAG 486

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           +  D  I   + +V +++R G L +A  + ++M  + +V  W+S++ G   HG      +
Sbjct: 487 FGSDRAIG--NSLVSMYSRCGYLVDACQVFDEMN-DHNVISWTSMISGLAKHGYAARALE 543

Query: 527 VAERMIELDPE-NACAYIQLSSIFATSG-EWEKSSLIRDIMREKHVGKLP 574
           +   MI    + N   YI + S  + +G   E     R  M +KH G +P
Sbjct: 544 LFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFR--MMQKHHGLIP 591



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 163/381 (42%), Gaps = 84/381 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT---DALLLF 64
           L+ +L +C    S  +G+QLH   L+ G L S   ++  L+ MY +  N     +A  +F
Sbjct: 258 LSSMLSACTELGSFRLGQQLHSLALRLG-LESDSCVSCGLVDMYAKSHNGQSLHNAREVF 316

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSL-----QLFNVMPQKNDFSWNMLISGFAKADLA 119
           + MP+ N  +W A++ G+++ G ++  +     ++ N   + N  +++ ++   A A+L 
Sbjct: 317 NRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLK--ACANLG 374

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD--------- 170
             + G+QIH+H + + L   +V+G++LV++Y + G    A    + + E +         
Sbjct: 375 DQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLD 434

Query: 171 ---------------------DFCLSALISGYANCGKMN--------------------- 188
                                 F   +LIS  A+ G +                      
Sbjct: 435 GDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIG 494

Query: 189 --------------DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
                         DA +VFD   D + + W SMISG   +     AL LFH M   GV 
Sbjct: 495 NSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVK 554

Query: 235 EDASTLASVLSACSSLGFLEHGKQ----VHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
            +  T  +VLSACS  G ++ GK+    +  H    G+I  +   + ++D   + G+  D
Sbjct: 555 PNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHH---GLIPRMEHYACMVDLLGRSGLVED 611

Query: 291 ACKLFSELKV-YDTILLNTMI 310
           A    +E+    D ++  T++
Sbjct: 612 ALDFINEMPCQVDALVWKTLL 632


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 172/632 (27%), Positives = 290/632 (45%), Gaps = 133/632 (21%)

Query: 51  YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           +++ G  + A  LF++MP +N  S N MI G++K G+  ++ +LF+ M ++   +W +LI
Sbjct: 57  FLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILI 116

Query: 111 SGFAK--------------------ADLAAL----------EYGKQI---HSHILVNGLD 137
            G+++                     D              E G QI    + I+  G D
Sbjct: 117 GGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYD 176

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA--------------------- 176
              ++G++LV+ Y K    + A Q+   M E D F  +A                     
Sbjct: 177 SRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFV 236

Query: 177 --------------LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 222
                         L+  Y+    + DAR++FD   +   V +N +ISGY  + +   A 
Sbjct: 237 IKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAF 296

Query: 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
            LF +++           A++LS  S+    E G+Q+H          +++V ++L+D Y
Sbjct: 297 DLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMY 356

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
           +K                               CG+ E+A+ IF  + ++S + W +MI 
Sbjct: 357 AK-------------------------------CGKFEEAEMIFTNLTHRSAVPWTAMIS 385

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
              Q G   E L LF  M +  +  D+ + AS++ A A+I+SL LG+Q+ + +   G  S
Sbjct: 386 AYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMS 445

Query: 403 DQIISTSLVDFYCKCG--YDALALFNEM--RN---------------------------- 430
           +    ++L+D Y KCG   DA+  F EM  RN                            
Sbjct: 446 NVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMV 505

Query: 431 -TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
            +G++P  ++F  +LSAC H GLV+EG   F++M   Y +DP  EHY+ +VD+  R+G  
Sbjct: 506 LSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRF 565

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSI 548
           NEA  L+ +MP + D  MWSS+L  C  H ++ L R+ A+++  ++   +A  Y+ +S+I
Sbjct: 566 NEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNI 625

Query: 549 FATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           +A +G+WE  S +   MR++ V KLP  SW +
Sbjct: 626 YAAAGQWENVSKVHKAMRDRGVKKLPAYSWVE 657



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 139/526 (26%), Positives = 222/526 (42%), Gaps = 99/526 (18%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I +G+Q+H   +K   + +   ++N LL  Y +  +  DA  LFDEMP ++  S+N +I 
Sbjct: 226 IVLGQQIHSFVIKTNFVWNVF-VSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIIS 284

Query: 81  GFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
           G+   G  + +  LF  +      +  F +  ++S    ++    E G+QIH+  +V   
Sbjct: 285 GYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLS--IASNTLDWEMGRQIHAQTIVTTA 342

Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
           D + ++G+SLV++Y KCG F  A                                 +F  
Sbjct: 343 DSEILVGNSLVDMYAKCGKFEEAEM-------------------------------IFTN 371

Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
            T  S+V W +MIS Y+      E L LF+KMR+  V+ D +T AS+L A +S+  L  G
Sbjct: 372 LTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG 431

Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
           KQ+H    K G + +V   SALLD Y+K G   DA + F E+   + +  N MI+ Y   
Sbjct: 432 KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAY--- 488

Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
                                       +QNG     L  F  M    L+ D  S   V+
Sbjct: 489 ----------------------------AQNGEAEATLKSFKEMVLSGLQPDSVSFLGVL 520

Query: 377 SACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGYDALALFNE----MRNT 431
           SAC++   +E G   F  +T I  LD  +    S+VD  C+ G      FNE    M   
Sbjct: 521 SACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGR-----FNEAEKLMAEM 575

Query: 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491
            + P  I ++++L+AC                  + H + E+   +   D       L +
Sbjct: 576 PIDPDEIMWSSVLNAC------------------RIHKNQELARRAA--DQLFNMEELRD 615

Query: 492 AVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
           A   +      A  G W ++ +   A  D+G+ +  A   +E+  E
Sbjct: 616 AAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHE 661



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/531 (24%), Positives = 231/531 (43%), Gaps = 59/531 (11%)

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           I + I+  G D D+   +  V  + K G+ + A Q+   M   +    + +ISGY   G 
Sbjct: 34  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +AR++FD   + ++V W  +I GY   N+  EA  LF +M+R G   D  T  ++LS 
Sbjct: 94  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 153

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK------- 299
           C+         QV     K+G    +IV + L+D+Y K      AC+LF E+        
Sbjct: 154 CNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTF 213

Query: 300 ----------------------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331
                                       V++  + N ++  YS    + DA+ +F  MP 
Sbjct: 214 AAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPE 273

Query: 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391
           +  +S+N +I G + +G    A DLF  +        +F  A+++S  +N    E+G Q+
Sbjct: 274 QDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQI 333

Query: 392 FARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDH 449
            A+  +   DS+ ++  SLVD Y KCG   +A  +F  + +    P    +TA++SA   
Sbjct: 334 HAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP----WTAMISAYVQ 389

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMW 508
            G  +EG + F+ M+    I  +    S +     RA     +++L +Q+  F    G  
Sbjct: 390 KGFYEEGLQLFNKMRQASVIADQATFASLL-----RASASIASLSLGKQLHSFIIKSGFM 444

Query: 509 SSILRGCV---AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS-----SL 560
           S++  G      +   G  +   +   E+   N  ++  + S +A +GE E +      +
Sbjct: 445 SNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEM 504

Query: 561 IRDIMREKHV---GKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQHQSA 608
           +   ++   V   G L  CS +  +    W  ++M  Q+   D  ++H ++
Sbjct: 505 VLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSM-TQIYKLDPRREHYAS 554



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 135/302 (44%), Gaps = 28/302 (9%)

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
           R   L++ ++L S+ S  S    L     +     K G   D   ++  +  + K G  S
Sbjct: 5   RPNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELS 64

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
            A +LF ++   +T+  N MI+ Y   G + +A+ +F  M  ++ ++W  +I G SQ   
Sbjct: 65  QARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQ 124

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE---QVFARVTIIGLDSDQII 406
             EA +LF  M +     D  +  +++S C   +  E+G    QV  ++  +G DS  I+
Sbjct: 125 FKEAFELFVQMQRCGTEPDYVTFVTLLSGC---NGHEMGNQITQVQTQIIKLGYDSRLIV 181

Query: 407 STSLVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGL--VKEGQKWFDA 462
             +LVD YCK     LA  LF EM      P I +FT     C + GL  +  GQ+    
Sbjct: 182 GNTLVDSYCKSNRLDLACQLFKEM------PEIDSFTFAAVLCANIGLDDIVLGQQIHSF 235

Query: 463 M-----KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
           +      W   +       + ++D +++   + +A  L ++MP E D   ++ I+ G   
Sbjct: 236 VIKTNFVWNVFVS------NALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIISGYAW 288

Query: 518 HG 519
            G
Sbjct: 289 DG 290



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 9/195 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL++  +  S+ +GKQLH   +K G +++     + LL +Y +CG+  DA+  F EM
Sbjct: 415 FASLLRASASIASLSLGKQLHSFIIKSGFMSNVFS-GSALLDVYAKCGSIKDAVQTFQEM 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
           P RN  SWNAMI  + + G  E +L+ F  M     Q +  S+  ++S  + + L  +E 
Sbjct: 474 PDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGL--VEE 531

Query: 124 GK-QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGY 181
           G    +S   +  LD      +S+V++  + G FN A +++  M  +PD+   S++++  
Sbjct: 532 GLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNAC 591

Query: 182 ANCGKMNDARRVFDR 196
                   ARR  D+
Sbjct: 592 RIHKNQELARRAADQ 606


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 170/606 (28%), Positives = 280/606 (46%), Gaps = 107/606 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C    ++  G++LH H +  G   + +P+   LLQMY +CG+  DA  +F+ M  +
Sbjct: 16  LVAACTKLQALEEGRRLHEHLIITG-FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIK 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           + F+W+++I  + + G  E ++ L+  M     + N  ++   + G   A +A L  G+ 
Sbjct: 75  DLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGC--ASVAGLADGRA 132

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH  IL + +  D VL  SL+N+Y KC +   A +V   MK  +    +A+IS Y   G 
Sbjct: 133 IHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAG- 191

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLS 245
                                         E  EAL LF +M +   +E +A T A++L 
Sbjct: 192 ------------------------------EHAEALELFSRMSKVEAIEPNAYTFATILG 221

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           A   LG LE G++VH H    G   +V+V +AL+  Y K G P +A K+F  +   + I 
Sbjct: 222 AVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVIS 281

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
             +MI  Y                               +Q+G+P EAL+LF    ++D+
Sbjct: 282 WTSMIAAY-------------------------------AQHGNPQEALNLF---KRMDV 307

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
                S +S ++ACA + +L+ G ++  RV    L S Q + TSL+  Y +CG       
Sbjct: 308 EPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQ-METSLLSMYARCGSLDDARR 366

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                       AL ++  M   G+    ITF ++L AC H  L
Sbjct: 367 VFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSL 426

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V + + +F ++   + + P +EHY CMVD+  R+G L +A  L+E MP++ D   W ++L
Sbjct: 427 VADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLL 486

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
            GC  HGD   G + A ++ EL P     Y+ LS+++A +  ++ +  +R  M E+ V  
Sbjct: 487 SGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTT 546

Query: 573 LPGCSW 578
               S+
Sbjct: 547 PVAVSY 552



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 168/390 (43%), Gaps = 65/390 (16%)

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M   G++ D   + S+++AC+ L  LE G+++H H    G   D+ + +ALL  Y+K G 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PN----KSLISW 337
             DA ++F  +++ D    +++I+ Y+  GR E A  ++R M      PN       +  
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
            + + GL+ +G  I    L   + + D+  D  SL ++   C         E V AR   
Sbjct: 121 CASVAGLA-DGRAIHQRILASKVPQDDVLQD--SLLNMYLKC--------DEMVEARKVF 169

Query: 398 IGLDSDQIIS-TSLVDFYCKCG--YDALALFNEMRNT-GVKPTIITFTAILSACD----- 448
            G+ +  + S T+++  Y + G   +AL LF+ M     ++P   TF  IL A +     
Sbjct: 170 EGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNL 229

Query: 449 ------------------------------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478
                                          CG   E +K FD+M  +  I      ++ 
Sbjct: 230 EKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVIS-----WTS 284

Query: 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538
           M+  +A+ G   EA+NL ++M  E     +SS L  C   G    GR++  R++E    +
Sbjct: 285 MIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLAS 344

Query: 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
                 L S++A  G  + +  + + M+ +
Sbjct: 345 PQMETSLLSMYARCGSLDDARRVFNRMKTR 374


>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 655

 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 193/686 (28%), Positives = 314/686 (45%), Gaps = 151/686 (22%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP- 68
           RLL+SC    ++ +G+ +H H LK+ +  S+  +   L ++Y  C     A  +FDE+P 
Sbjct: 4   RLLESCIRSRNLILGQIIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPH 63

Query: 69  -RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAAL 121
            R N  +W+ MI  ++  G  EK+L L+       V P K  F++  ++   A A L A+
Sbjct: 64  PRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTK--FTYPFVLK--ACAGLRAI 119

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           E GK IHSH+                    KC +F +           D +  +AL+  Y
Sbjct: 120 EDGKLIHSHV--------------------KCSNFAA-----------DMYVCTALVDFY 148

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTL 240
           A CG+++ A +VFD       V WN+MISG+  +   T+ + LF  MRR+  L  + ST+
Sbjct: 149 AKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTI 208

Query: 241 ASVLSACSSLGFLEHGKQVHGH----------ACKVGVID-------------------- 270
             +  A    G L  GK VHG+            K G++D                    
Sbjct: 209 VGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDFK 268

Query: 271 -DVIVASALLDTYSKRGMPSDA---------------------------CKLFSELK--- 299
            + +  SA++  Y +  M  +A                           C  F +L    
Sbjct: 269 KNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILMGCARFGDLSGGR 328

Query: 300 -----------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
                      + D  + NT+I+ Y+  G + DA   F  +  K ++S+NS+I G  +N 
Sbjct: 329 CVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENC 388

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              E+  LF  M    +R D  +L  +++AC+N+++L  G        + G   +  I  
Sbjct: 389 RAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICN 448

Query: 409 SLVDFYCKCGY---------------------------------DALALFNEMRNTGVKP 435
           +L+D Y KCG                                  +AL+LFN M++TGV P
Sbjct: 449 ALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGVHP 508

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
             +T  AILSAC H GLV EG++ F++M +  +++ P ++HY+CM DL ARAG L+EA +
Sbjct: 509 DEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCMTDLLARAGYLDEAYD 568

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
            + +MPFE D+ +  ++L  C  + +  LG +V+++M  L  E   + + LS+ ++ +  
Sbjct: 569 FVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKKMQSLG-ETTESLVLLSNTYSAAER 627

Query: 555 WEKSSLIRDIMREKHVGKLPGCSWAD 580
           WE ++ IR   ++  + K PG SW D
Sbjct: 628 WEDAAKIRMTQKKSGLLKTPGYSWVD 653


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 164/573 (28%), Positives = 296/573 (51%), Gaps = 79/573 (13%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLI 110
           GN   A  +F+ +   + F +N M++ + K G   K L LF  + +     + F++  ++
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 250

Query: 111 SGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 170
              A   L  +  G+++   I+  G+D D+ + +SL+++Y +  +               
Sbjct: 251 K--AIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSN--------------- 293

Query: 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230
                           + +A+++FD  T   SV WN MISGY+      +A+  F +M++
Sbjct: 294 ----------------VENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQ 337

Query: 231 NGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMP 288
            G  + D +T+ S LSAC++L  LE G ++H +  K +G      + +ALLD Y+K G  
Sbjct: 338 EGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT--TRIDNALLDMYAKCGCL 395

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
           + A  +F E+ + + I   +MI+ Y +CG + +A+ +F   P + ++ W +MI G  Q  
Sbjct: 396 NIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 455

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              +A+ LF  M    ++ DKF++ ++++ CA + +LE G+ +   +    +  D ++ T
Sbjct: 456 HFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT 515

Query: 409 SLVDFYCKCG---------------------------------YDALALFNEMRNTGVKP 435
           +L++ Y KCG                                  +AL LF+EM   G KP
Sbjct: 516 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKP 575

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
             ITF  +LSAC H GLV+EG+++F++MK  + I+P++EHY C++DL  RAG L+EA  L
Sbjct: 576 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 635

Query: 496 IEQMPF---EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
           I+++P    E  V ++ ++L  C  H +  +G ++A+++  ++  ++  +  L++I+A+ 
Sbjct: 636 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASV 695

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSW--ADGIA 583
             WE +  +R  M+E  V K+PGCS    DGI 
Sbjct: 696 DRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIV 728



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 169/410 (41%), Gaps = 113/410 (27%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +G ++H +  K+  L  T  I N LL MY +CG    A  +FDEM  +N
Sbjct: 352 LSACTALKNLELGDEIHNYVRKE--LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKN 409

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---------------- 115
              W +MI G++  G   ++  LF+  P ++   W  +I+G+ +                
Sbjct: 410 VICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQI 469

Query: 116 -----------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
                            A L ALE GK IH ++  N +  D V+G++L+ +Y KCG  + 
Sbjct: 470 QRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDK 529

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           + ++   +++ D    +++I G A  GK                                
Sbjct: 530 SLEIFYELEDKDTASWTSIICGLAMNGKT------------------------------- 558

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-------KQVHGHACKV---GV 268
           +EAL LF +M R G   D  T   VLSACS  G +E G       K+VH    KV   G 
Sbjct: 559 SEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGC 618

Query: 269 IDDVIVASALLDTYSK--RGMPSDACK--------LFSELKVY----------------- 301
           + D++  + LLD   +  + +P + C+        L S  +++                 
Sbjct: 619 VIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIE 678

Query: 302 --DTILLNTMITVYSSCGRIEDAKHIFR--------TMPNKSLISWNSMI 341
             D+ +   +  +Y+S  R EDAK + R         MP  SLI  + ++
Sbjct: 679 SCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIV 728



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 189/433 (43%), Gaps = 80/433 (18%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           KQI S I   GL+                GD ++ N+++        FC  +      + 
Sbjct: 160 KQIQSQIFRIGLE----------------GDRDTINKLMA-------FCADS------SL 190

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G +  A ++F+   D S  ++N M+  Y       + LLLF ++R +G+  D  T   VL
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 250

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            A   L  +  G++V G   K G+  D  V ++L+D Y +     +A KLF E+   D++
Sbjct: 251 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSV 310

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N MI+ Y  C R EDA + FR M  +              N  P EA           
Sbjct: 311 SWNVMISGYVRCRRFEDAINTFREMQQEG-------------NEKPDEA----------- 346

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGYDALA 423
                 ++ S +SAC  + +LELG+++   V   +G  +   I  +L+D Y KCG   +A
Sbjct: 347 ------TVVSTLSACTALKNLELGDEIHNYVRKELGFTTR--IDNALLDMYAKCGCLNIA 398

Query: 424 --LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
             +F+EM    V    I +T+++S   +CG ++E +  FD    +     ++  ++ M++
Sbjct: 399 RNIFDEMSMKNV----ICWTSMISGYINCGDLREARDLFDKSPVR-----DVVLWTAMIN 449

Query: 482 LFARAGCLNEAVNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKVA----ERMIEL 534
            + +    ++AV L  +M  +    D     ++L GC   G    G+ +     E  I +
Sbjct: 450 GYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITM 509

Query: 535 DPENACAYIQLSS 547
           D     A I++ S
Sbjct: 510 DVVVGTALIEMYS 522



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    ++  GK +H  +L +  +   + +   L++MY +CG    +L +F E+  +
Sbjct: 482 LLTGCAQLGALEQGKWIH-GYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDK 540

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           +  SW ++I G    G   ++L+LF+ M     + +D ++  ++S  +   L  +E G++
Sbjct: 541 DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGL--VEEGRR 598

Query: 127 -IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
             +S   V+ ++        +++L G+ G  + A +++ 
Sbjct: 599 FFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQ 637


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 181/581 (31%), Positives = 267/581 (45%), Gaps = 104/581 (17%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S + +   LL MY + G  +DA  +FD MP+RN FSW+ M+ G+      E++  LF +M
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210

Query: 99  -----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGK 152
                 +K++F    ++S  +      L  G+Q+H  I+ +G LDF SV  +SLV +Y K
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVP--LGLLMGEQMHGLIVKDGLLDFVSV-ENSLVTMYAK 267

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
            G   +A  V    +E +    SA+I+GYA                              
Sbjct: 268 AGCMGAAFHVFESSRERNSITWSAMITGYAQ----------------------------- 298

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
             N E   A+ +F +M   G      T   VL+A S LG L  GKQ HG   K+G    +
Sbjct: 299 --NGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQI 356

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            V SAL+D Y+K G  +DA + F +L   D +L   M++                     
Sbjct: 357 YVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVS--------------------- 395

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
                     G  QNG   EAL L+  M+K  +   K ++AS + ACA I++LE G+Q+ 
Sbjct: 396 ----------GHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 445

Query: 393 ARVTIIGLDSDQIISTSLVDFYCK---------------------------------CGY 419
            ++   GL     + ++L   Y K                                 CG 
Sbjct: 446 TQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGN 505

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
            AL LF EM+  G  P  ITF  IL AC H GLV  G ++F  M   Y + P ++HY+CM
Sbjct: 506 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 565

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VD+ +RAG L EA + IE +  +    +W  +L  C +  D  +G    ER++EL   ++
Sbjct: 566 VDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDS 625

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            AYI LS+I+A+  +W     +R +MR + V K PGCSW +
Sbjct: 626 SAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVE 666



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 35/284 (12%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ VGKQ H   +K G     + + + L+ MY +CG   DA   FD++   +   W AM+
Sbjct: 336 ALAVGKQAHGLMVKLG-FEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMV 394

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDF-SWNMLISGF-AKADLAALEYGKQIHSHILVNGLD 137
            G ++ G  E++L L+  M ++    S + + SG  A A +AALE GKQ+H+ I+  GL 
Sbjct: 395 SGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLG 454

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
             + +GS+L  +Y KCG+      V                            RR+ DR 
Sbjct: 455 LGAPVGSALSTMYSKCGNLEDGMSVF---------------------------RRIPDRD 487

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                + WNS+ISG+  N     AL LF +M+  G + D  T  ++L ACS +G ++ G 
Sbjct: 488 V----IAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGW 543

Query: 258 QVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +      K  G+   +   + ++D  S+ GM  +A      + +
Sbjct: 544 EYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITI 587



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 38/275 (13%)

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
           ACK+ S   V +  +  +++ +Y   G + DA+ +F  MP ++  SW++M+ G +     
Sbjct: 143 ACKIPS--AVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCS 200

Query: 351 IEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
            EA DLF  M  +      +F   +V+SA +    L +GEQ+   +   GL     +  S
Sbjct: 201 EEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENS 260

Query: 410 LVDFYCKCGY---------------------------------DALALFNEMRNTGVKPT 436
           LV  Y K G                                   A+++F++M   G  PT
Sbjct: 261 LVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPT 320

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
             TF  +L+A    G +  G++    M  +   + +I   S +VD++A+ GC+ +A    
Sbjct: 321 EFTFVGVLNASSDLGALAVGKQAHGLMV-KLGFEVQIYVKSALVDMYAKCGCIADAKEGF 379

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           +Q+ +E D+ +W++++ G V +G+      +  RM
Sbjct: 380 DQL-YEVDIVLWTAMVSGHVQNGEHEEALTLYARM 413



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C    ++  GKQLH   +K G L    P+ + L  MY +CGN  D + +F  +
Sbjct: 425 IASGLRACAGIAALEPGKQLHTQIVKYG-LGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 483

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM 108
           P R+  +WN++I GF + G    +L LF  M  +     N+
Sbjct: 484 PDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNI 524


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 170/593 (28%), Positives = 274/593 (46%), Gaps = 105/593 (17%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           + +H H +K    +    +    + M+++C +   A  +F+ MP R+  +WNAM+ GF +
Sbjct: 72  EMVHAHLIKSPFWSDVF-VGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQ 130

Query: 85  LGHKEKSLQLFNVMPQKNDFS------WNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            GH +K+  LF  M + N+ +        ++ S   +  L  LE    +H+  +  G+D 
Sbjct: 131 SGHTDKAFSLFREM-RLNEITPDSVTVMTLIQSASFEKSLKLLE---AMHAVGIRLGVDV 186

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
              + ++ ++ YGKCGD +SA  V   +                            DR  
Sbjct: 187 QVTVANTWISTYGKCGDLDSAKLVFEAI----------------------------DR-G 217

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           D + V WNSM   Y    E  +A  L+  M R     D ST  ++ ++C +   L  G+ 
Sbjct: 218 DRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRL 277

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +H HA  +G   D+                                 +NT I++YS    
Sbjct: 278 IHSHAIHLGTDQDIEA-------------------------------INTFISMYSKSED 306

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
              A+ +F  M +++ +SW  MI G ++ G   EAL LF  M K   + D  +L S+IS 
Sbjct: 307 TCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISG 366

Query: 379 CANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG------------------- 418
           C    SLE G+ + AR  I G   D + I  +L+D Y KCG                   
Sbjct: 367 CGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVT 426

Query: 419 --------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                          +AL LF++M +   KP  ITF A+L AC H G +++G ++F  MK
Sbjct: 427 WTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMK 486

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             Y+I P ++HYSCMVDL  R G L EA+ LI  M  + D G+W ++L  C  H +  + 
Sbjct: 487 QVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIA 546

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
            + AE +  L+P+ A  Y+++++I+A +G W+  + IR IM+++++ K PG S
Sbjct: 547 EQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGES 599



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 148/586 (25%), Positives = 253/586 (43%), Gaps = 124/586 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR- 69
           L+QS +   S+ + + +H   ++ G+ +  + +AN  +  Y +CG+   A L+F+ + R 
Sbjct: 159 LIQSASFEKSLKLLEAMHAVGIRLGV-DVQVTVANTWISTYGKCGDLDSAKLVFEAIDRG 217

Query: 70  -RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKADLAALEYGK 125
            R   SWN+M + +   G    +  L+ +M +   K D S  + ++   + +   L  G+
Sbjct: 218 DRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQ-NPETLTQGR 276

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            IHSH +  G D D    ++ +++Y K  D  SA  + ++M        + +ISGYA  G
Sbjct: 277 LIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKG 336

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            M+                               EAL LFH M ++G   D  TL S++S
Sbjct: 337 DMD-------------------------------EALALFHAMIKSGEKPDLVTLLSLIS 365

Query: 246 ACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
            C   G LE GK +   A   G   D+V++ +AL+D YSK                    
Sbjct: 366 GCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSK-------------------- 405

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      CG I +A+ IF   P K++++W +MI G + NG  +EAL LF  M  LD
Sbjct: 406 -----------CGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLD 454

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTII-----GLDSDQIISTSLVDFYCKCGY 419
            + +  +  +V+ ACA+  SLE G + F  +  +     GLD      + +VD   + G 
Sbjct: 455 YKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDH----YSCMVDLLGRKGK 510

Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
             +AL L   +RN   KP    + A+L+AC     VK  ++  +++   ++++P++    
Sbjct: 511 LEEALEL---IRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESL---FNLEPQM---- 560

Query: 478 CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP- 536
                         A   +E     A  GMW    R       + + +   E +I+++  
Sbjct: 561 --------------AAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGK 606

Query: 537 ------------ENACAYIQLS--SIFATSGEWEKSSLIRDIMREK 568
                       EN   Y  L+  S+FA     +K  L +D+ +E+
Sbjct: 607 NHSFTVGEHGHVENEVIYFTLNGLSLFAK----DKHVLYKDVYKEQ 648



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 122/536 (22%), Positives = 229/536 (42%), Gaps = 109/536 (20%)

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK-ADLAALEYGKQIH 128
           +WN  I   +      +SL LF  M     + N+F++  +    A+ AD+   E    +H
Sbjct: 19  AWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCE---MVH 75

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           +H++ +    D  +G++ V+++ KC   NS +                            
Sbjct: 76  AHLIKSPFWSDVFVGTATVDMFVKC---NSVDY--------------------------- 105

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            A +VF+R  +  +  WN+M+SG+  +    +A  LF +MR N +  D+ T+ +++ + S
Sbjct: 106 -AAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSAS 164

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
               L+  + +H    ++GV   V VA                               NT
Sbjct: 165 FEKSLKLLEAMHAVGIRLGVDVQVTVA-------------------------------NT 193

Query: 309 MITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
            I+ Y  CG ++ AK +F  +   +++++SWNSM    S  G   +A  L+C M + + +
Sbjct: 194 WISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFK 253

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK---------- 416
            D  +  ++ ++C N  +L  G  + +    +G D D     + +  Y K          
Sbjct: 254 PDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLL 313

Query: 417 ----------------CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                            GY       +ALALF+ M  +G KP ++T  +++S C   G +
Sbjct: 314 FDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSL 373

Query: 454 KEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           + G KW DA    Y    + +   + ++D++++ G ++EA ++ +  P E  V  W++++
Sbjct: 374 ETG-KWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP-EKTVVTWTTMI 431

Query: 513 RGCVAHGDKGLGRKVAERMIELD-PENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
            G   +G      K+  +MI+LD   N   ++ +    A SG  EK      IM++
Sbjct: 432 AGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQ 487



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 146/366 (39%), Gaps = 70/366 (19%)

Query: 191 RRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           RR++ R +  SSV  WN  I   ++ N+  E+LLLF +M+R G   +  T   V  AC+ 
Sbjct: 6   RRLY-RISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACAR 64

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  +   + VH H  K     DV V +A +D + K                         
Sbjct: 65  LADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVK------------------------- 99

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                 C  ++ A  +F  MP +   +WN+M+ G  Q+G   +A  LF  M   ++  D 
Sbjct: 100 ------CNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDS 153

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
            ++ ++I + +   SL+L E + A    +G+D    ++ + +  Y KCG           
Sbjct: 154 VTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEA 213

Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
                                   +DA  L+  M     KP + TF  + ++C +   + 
Sbjct: 214 IDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLT 273

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           +G +   +       D +IE  +  + +++++     A  L + M     V  W+ ++ G
Sbjct: 274 QG-RLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVS-WTVMISG 331

Query: 515 CVAHGD 520
               GD
Sbjct: 332 YAEKGD 337



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 10/180 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L+  C    S+  GK +       G     + I N L+ MY +CG+  +A  +FD  
Sbjct: 360 LLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNT 419

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
           P +   +W  MI G+   G   ++L+LF+ M     + N  ++  ++   A +   +LE 
Sbjct: 420 PEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHS--GSLEK 477

Query: 124 GKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISG 180
           G + + HI+    +    L   S +V+L G+ G    A +++ NM  +PD     AL++ 
Sbjct: 478 GWE-YFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNA 536


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 181/581 (31%), Positives = 267/581 (45%), Gaps = 104/581 (17%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S + +   LL MY + G  +DA  +FD MP+RN FSW+ M+ G+      E++  LF +M
Sbjct: 45  SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 104

Query: 99  -----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGK 152
                 +K++F    ++S  +      L  G+Q+H  I+ +G LDF SV  +SLV +Y K
Sbjct: 105 LEECPSEKSEFVATAVLSAVSVP--LGLLMGEQMHGLIVKDGLLDFVSV-ENSLVTMYAK 161

Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
            G   +A  V    +E +    SA+I+GYA                              
Sbjct: 162 AGCMGAAFHVFESSRERNSITWSAMITGYAQ----------------------------- 192

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
             N E   A+ +F +M   G      T   VL+A S LG L  GKQ HG   K+G    +
Sbjct: 193 --NGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQI 250

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
            V SAL+D Y+K G  +DA + F +L   D +L   M++                     
Sbjct: 251 YVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVS--------------------- 289

Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
                     G  QNG   EAL L+  M+K  +   K ++AS + ACA I++LE G+Q+ 
Sbjct: 290 ----------GHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 339

Query: 393 ARVTIIGLDSDQIISTSLVDFYCK---------------------------------CGY 419
            ++   GL     + ++L   Y K                                 CG 
Sbjct: 340 TQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGN 399

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
            AL LF EM+  G  P  ITF  IL AC H GLV  G ++F  M   Y + P ++HY+CM
Sbjct: 400 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 459

Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
           VD+ +RAG L EA + IE +  +    +W  +L  C +  D  +G    ER++EL   ++
Sbjct: 460 VDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDS 519

Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            AYI LS+I+A+  +W     +R +MR + V K PGCSW +
Sbjct: 520 SAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVE 560



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 35/284 (12%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ VGKQ H   +K G     + + + L+ MY +CG   DA   FD++   +   W AM+
Sbjct: 230 ALAVGKQAHGLMVKLG-FEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMV 288

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDF-SWNMLISGF-AKADLAALEYGKQIHSHILVNGLD 137
            G ++ G  E++L L+  M ++    S + + SG  A A +AALE GKQ+H+ I+  GL 
Sbjct: 289 SGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLG 348

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
             + +GS+L  +Y KCG+      V                            RR+ DR 
Sbjct: 349 LGAPVGSALSTMYSKCGNLEDGMSVF---------------------------RRIPDRD 381

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                + WNS+ISG+  N     AL LF +M+  G + D  T  ++L ACS +G ++ G 
Sbjct: 382 V----IAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGW 437

Query: 258 QVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +      K  G+   +   + ++D  S+ GM  +A      + +
Sbjct: 438 EYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITI 481



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 38/275 (13%)

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
           ACK+ S   V +  +  +++ +Y   G + DA+ +F  MP ++  SW++M+ G +     
Sbjct: 37  ACKIPS--AVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCS 94

Query: 351 IEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
            EA DLF  M  +      +F   +V+SA +    L +GEQ+   +   GL     +  S
Sbjct: 95  EEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENS 154

Query: 410 LVDFYCKCGY---------------------------------DALALFNEMRNTGVKPT 436
           LV  Y K G                                   A+++F++M   G  PT
Sbjct: 155 LVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPT 214

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
             TF  +L+A    G +  G++    M  +   + +I   S +VD++A+ GC+ +A    
Sbjct: 215 EFTFVGVLNASSDLGALAVGKQAHGLMV-KLGFEVQIYVKSALVDMYAKCGCIADAKEGF 273

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           +Q+ +E D+ +W++++ G V +G+      +  RM
Sbjct: 274 DQL-YEVDIVLWTAMVSGHVQNGEHEEALTLYARM 307



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C    ++  GKQLH   +K G L    P+ + L  MY +CGN  D + +F  +
Sbjct: 319 IASGLRACAGIAALEPGKQLHTQIVKYG-LGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 377

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM 108
           P R+  +WN++I GF + G    +L LF  M  +     N+
Sbjct: 378 PDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNI 418


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 177/610 (29%), Positives = 285/610 (46%), Gaps = 84/610 (13%)

Query: 20  SIHVGKQLHLHFLKKGIL--NSTLPIANRLLQMYMRCGNPTDALLLFDEM--------PR 69
           S  V  +LH H L  G+L  +ST P  +RL+  +    +P     L   +        P 
Sbjct: 20  SFRVLLKLHAHHLVSGLLSSHSTSPFIDRLVAAFAH-SDPASPRPLLHALAILASLPSPP 78

Query: 70  RNCFSWNAMIEGFMKLGHK----EKSLQLFNVMPQKNDFSWNMLISGF---AKADLAALE 122
            + F +NA         H+       L L+  +        + L   F   A A L    
Sbjct: 79  DSAFPYNAAFRALSLCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRS 138

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           YG  +  H  V  L F +                             D F ++A +  ++
Sbjct: 139 YGAAVLGH--VQKLGFSA-----------------------------DVFVVNAAMHFWS 167

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG--VLEDASTL 240
             G M  ARR+FD +     V WN++I GY+ +    EAL LF ++  +G  V  D  T+
Sbjct: 168 VRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTV 227

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
              +S C+ +G LE GK++H      GV   V + +A++D Y K G    A  +F  +  
Sbjct: 228 IGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISN 287

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
              +   TMI  ++  G +EDA+ +F  MP + +  WN+++ G  QN    EA+ LF  M
Sbjct: 288 RTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEM 347

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY- 419
            K  +  ++ ++ +++SAC+ + +LE+G  V   +    L     + TSLVD Y KCG  
Sbjct: 348 QKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNI 407

Query: 420 --------------------------------DALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +A+  F  M + G++P  ITF  +LSAC
Sbjct: 408 KKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSAC 467

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV+ G+++F  M  +YH++ +++HYSCM+DL  RAG L+EA  L+  MP + D  +
Sbjct: 468 CHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVV 527

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++   C  HG+  LG K A +++ELDP ++  Y+ L++++A +   +K+  +R +MR 
Sbjct: 528 WGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRH 587

Query: 568 KHVGKLPGCS 577
             V K+PGCS
Sbjct: 588 LGVEKVPGCS 597


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 236/452 (52%), Gaps = 35/452 (7%)

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
            VL +  + D F ++A     +  G M DARR+FDR+     V WN++I GY+      E
Sbjct: 150 HVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAE 209

Query: 221 ALLLFHKMRRNG--VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
           AL LF +M      V  D  T+ + +S C  +  LE G+++HG     GV   V + +AL
Sbjct: 210 ALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNAL 269

Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
           +D Y K G    A  +F  ++    +   TMI  ++  G ++DA+ +F  MP + +  WN
Sbjct: 270 MDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWN 329

Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
           +++ G  Q     EAL LF  M +  +  D+ ++ ++++AC+ + +LE+G  V   +   
Sbjct: 330 ALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKH 389

Query: 399 GLDSDQIISTSLVDFYCKCGY---------------------------------DALALF 425
            L     + TSL+D Y KCG                                  +A+  F
Sbjct: 390 RLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHF 449

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
             M   G KP  ITF  +LSAC H GLVKEG+++F  M+ +YH++ +++HYSCM+DL  R
Sbjct: 450 RTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGR 509

Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545
           AG L+EA  L+  MP E D  +W +I   C   G+  LG K A +++E+DP ++  Y+ L
Sbjct: 510 AGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLL 569

Query: 546 SSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           ++++A +   +K+  +R +MR   V K+PGCS
Sbjct: 570 ANMYAEANMRKKADKVRAMMRHLGVEKVPGCS 601



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/492 (28%), Positives = 241/492 (48%), Gaps = 50/492 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C        G     H L+ G L+S + + N         G   DA  LFD  P R
Sbjct: 131 LLKACARLREWGYGDAALAHVLRLG-LDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVR 189

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYG 124
           +  SWN +I G+++ G+  ++L+LF      + + + ++ +    +SG  +  +  LE G
Sbjct: 190 DLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQ--MRDLELG 247

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +++H  +  +G+     L ++L+++Y KCG    A  V   ++       + +I G+A  
Sbjct: 248 RRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKF 307

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G M+DAR+VFD   +     WN++++GY+   +  EAL LFH+M+   V+ D  T+ ++L
Sbjct: 308 GLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLL 367

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           +ACS LG LE G  VH +  K  ++  V + ++L+D Y+K                    
Sbjct: 368 TACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAK-------------------- 407

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
                      CG IE A HIF+ +P K+ ++W +MI GL+ +G   EA++ F  M +L 
Sbjct: 408 -----------CGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELG 456

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGY--DA 421
            + D+ +   V+SAC +   ++ G + F+ + T   L+      + ++D   + G+  +A
Sbjct: 457 QKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEA 516

Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH-YSCMV 480
             L N M    ++P  + + AI  AC   G +  G+K   AMK    IDP     Y  + 
Sbjct: 517 EQLVNTM---PMEPDAVVWGAIFFACRMQGNISLGEK--AAMKL-VEIDPSDSGIYVLLA 570

Query: 481 DLFARAGCLNEA 492
           +++A A    +A
Sbjct: 571 NMYAEANMRKKA 582



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 144/380 (37%), Gaps = 100/380 (26%)

Query: 222 LLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           L L+  + R+G    D  T   +L AC+ L    +G     H  ++G+  DV V +A   
Sbjct: 109 LPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATH 168

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
             S RG   DA +LF    V D +  NT+I                              
Sbjct: 169 FLSIRGPMEDARRLFDRSPVRDLVSWNTLIG----------------------------- 199

Query: 341 IVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTII 398
             G  + G+P EAL+LF  M   D  +R D+ ++ + +S C  +  LELG ++   V   
Sbjct: 200 --GYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSD 257

Query: 399 GLDSDQIISTSLVDFYCKCGY---------------------------------DALALF 425
           G+     +  +L+D Y KCG                                  DA  +F
Sbjct: 258 GVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVF 317

Query: 426 NEM-------------------------------RNTGVKPTIITFTAILSACDHCGLVK 454
           +EM                               +   V P  IT   +L+AC   G ++
Sbjct: 318 DEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALE 377

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
            G  W      ++ +   +   + ++D++A+ G + +A+++ +++P E +   W++++ G
Sbjct: 378 MGM-WVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIP-EKNALTWTAMICG 435

Query: 515 CVAHGDKGLGRKVAERMIEL 534
              HG      +    MIEL
Sbjct: 436 LANHGHANEAIEHFRTMIEL 455


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 164/608 (26%), Positives = 284/608 (46%), Gaps = 99/608 (16%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFL--KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +LL+      ++  G+ +H H         +S +   N L+ +Y++C   + A  LFD M
Sbjct: 24  KLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSM 83

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN--MLISGFAKADLAALEYGK 125
           PRRN  SW+A++ G+M+ G+  +  +LF  M  K++   N  ++ +  +  D      GK
Sbjct: 84  PRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVEGK 143

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q H + L +GL+F   + ++L+ LY KC D  +A Q+L  +   D FC            
Sbjct: 144 QCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFC------------ 191

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
                              +N +++G + +    EA+ +   +   G+  + +T  ++  
Sbjct: 192 -------------------YNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFR 232

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
            C+SL  +  GKQVH    K  +  DV + S+++D Y K                     
Sbjct: 233 LCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGK--------------------- 271

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                     CG +   +  F  + +++++SW S+I    QN    EAL+LF  M    +
Sbjct: 272 ----------CGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCI 321

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
             +++++A + ++ A +S+L LG+Q+ AR    GL  + ++  +L+  Y K G       
Sbjct: 322 PPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQS 381

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +AL++F +M  TG +P  +TF  ++ AC H  L
Sbjct: 382 VFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKL 441

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V EG  +F+ +  Q+ I P +EHY+C+V L +R+G L+EA N +       DV  W ++L
Sbjct: 442 VDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLL 501

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C  H     GRK+AE +++L+P +   YI LS++ A    W+    IR +MRE++V K
Sbjct: 502 NACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKK 561

Query: 573 LPGCSWAD 580
            PG SW +
Sbjct: 562 EPGVSWLE 569



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A L  S     ++ +G QLH    K G L   + + N L+ MY + G+   A  +F  M
Sbjct: 328 MAVLFNSAAGLSALCLGDQLHARAEKSG-LKGNVMVGNALIIMYFKSGDILAAQSVFSNM 386

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
              N  +WNA+I G    G  +++L +F  M
Sbjct: 387 TCCNIITWNAIITGHSHHGLGKEALSMFQDM 417


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 172/603 (28%), Positives = 272/603 (45%), Gaps = 113/603 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQLH H +K G  +  L + N++L +Y++C    DA  LF+E+  RN  SWN +I G +
Sbjct: 69  GKQLHAHLIKFGFCH-VLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIV 127

Query: 84  KLG-------HKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
             G       ++++    F       V+P    F  N L     K     ++ G Q+H  
Sbjct: 128 GCGDANENDSNQQQCFSYFKRMLLELVVPDSTTF--NGLFGVCVK--FHDIDMGFQLHCF 183

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            +  GLD D  +GS LV+LY +CG   +A +V  +++  D                    
Sbjct: 184 AVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRD-------------------- 223

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                       V+WN MIS Y  N    EA ++F+ MR +G   D  T +++LS C SL
Sbjct: 224 -----------LVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSL 272

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
            + + GKQVHGH  ++    DV+VASAL++ Y+K     DA +LF  + +          
Sbjct: 273 EYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVI---------- 322

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
                                +++++WN++IVG        E + L   M +     D+ 
Sbjct: 323 ---------------------RNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDEL 361

Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------ 418
           +++S IS C  +S++    Q  A            ++ SL+  Y KCG            
Sbjct: 362 TISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLT 421

Query: 419 ---------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
                                 +A  +F +M + G+ P  I+F  +LSAC HCGLV +G 
Sbjct: 422 REPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGL 481

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
            +F+ M   Y I P+  HY+C+VDL  R G +NEA   +  MP EA+     + +  C  
Sbjct: 482 HYFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAESNTLGAFVASCNL 541

Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           H + GL +  AE++  ++PE    Y  +S+I+A+   W     +R +M  K   ++PGCS
Sbjct: 542 HANIGLAKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNKCDARVPGCS 601

Query: 578 WAD 580
           W +
Sbjct: 602 WIE 604



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 209/483 (43%), Gaps = 81/483 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L   C   H I +G QLH   +K G L+    + + L+ +Y +CG   +A  +F  +  R
Sbjct: 164 LFGVCVKFHDIDMGFQLHCFAVKLG-LDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHR 222

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
           +   WN MI  +      E++  +FN+M       ++F+++ L+S      L   ++GKQ
Sbjct: 223 DLVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLS--ICDSLEYYDFGKQ 280

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H HIL    D D ++ S+L+N+Y K     + N V                        
Sbjct: 281 VHGHILRLSFDSDVLVASALINMYAK-----NENIV------------------------ 311

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
             DA R+FD     + V WN++I GY +  E  E + L  +M R G   D  T++S +S 
Sbjct: 312 --DAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISL 369

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C  +  +    Q H  A K    + + VA++L+  YSK G  + ACK F   +  D +  
Sbjct: 370 CGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTREPDLVSW 429

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
            ++I  Y+  G  ++A  +F  M +  +I                               
Sbjct: 430 TSLINAYAFHGLAKEATEVFEKMLSCGIIP------------------------------ 459

Query: 367 MDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGYDALALF 425
            D+ S   V+SAC++   +  G   F  +T +  +  D    T LVD   + G    A F
Sbjct: 460 -DQISFLGVLSACSHCGLVTKGLHYFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEA-F 517

Query: 426 NEMRNTGVKPTIITFTAILSACD---HCGLVKEGQKWFDAMKWQYHIDPEIE-HYSCMVD 481
             +R+  ++    T  A +++C+   + GL     KW  A +  + I+PE   +Y+ M +
Sbjct: 518 EFLRSMPMEAESNTLGAFVASCNLHANIGLA----KW--AAEKLFTIEPEKNVNYAVMSN 571

Query: 482 LFA 484
           ++A
Sbjct: 572 IYA 574



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/457 (20%), Positives = 188/457 (41%), Gaps = 104/457 (22%)

Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
           A  A L  GKQ+H+H++                 +G C   +  NQ+L +          
Sbjct: 61  AKRALLPEGKQLHAHLIK----------------FGFCHVLSLQNQILGV---------- 94

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI----SNNEDT---EALLLFHKM 228
                Y  C + +DA ++F+  +  + V WN +I G +    +N  D+   +    F +M
Sbjct: 95  -----YLKCTEADDAEKLFEELSVRNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRM 149

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
               V+ D++T   +   C     ++ G Q+H  A K+G+  D  V S L+D Y++ G+ 
Sbjct: 150 LLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLV 209

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
            +A ++F  ++  D ++ N MI+ Y+     E+A  +F      +L+ W+        NG
Sbjct: 210 ENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMF------NLMRWD------GANG 257

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
                              D+F+ ++++S C ++   + G+QV   +  +  DSD ++++
Sbjct: 258 -------------------DEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVAS 298

Query: 409 SLVDFYCK--------------------------CGY-------DALALFNEMRNTGVKP 435
           +L++ Y K                           GY       + + L  EM   G  P
Sbjct: 299 ALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSP 358

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
             +T ++ +S C +   + E  +   A   +      +   + ++  +++ G +  A   
Sbjct: 359 DELTISSTISLCGYVSAITETMQ-AHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKC 417

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
             ++  E D+  W+S++     HG      +V E+M+
Sbjct: 418 F-RLTREPDLVSWTSLINAYAFHGLAKEATEVFEKML 453



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 43/291 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LL  C++      GKQ+H H L+    +S + +A+ L+ MY +  N  DA  LFD M
Sbjct: 262 FSNLLSICDSLEYYDFGKQVHGHILRLS-FDSDVLVASALINMYAKNENIVDAHRLFDNM 320

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAAL 121
             RN  +WN +I G+       + ++L   M      P +   S  + + G+    ++A+
Sbjct: 321 VIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISLCGY----VSAI 376

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
               Q H+  + +       + +SL++ Y KCG   SA +   + +EPD    ++LI+ Y
Sbjct: 377 TETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTREPDLVSWTSLINAY 436

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           A  G   +A  VF+                               KM   G++ D  +  
Sbjct: 437 AFHGLAKEATEVFE-------------------------------KMLSCGIIPDQISFL 465

Query: 242 SVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDA 291
            VLSACS  G +  G         V  ++ D    + L+D   + G+ ++A
Sbjct: 466 GVLSACSHCGLVTKGLHYFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEA 516



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 126/334 (37%), Gaps = 76/334 (22%)

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A+ L   +    L  GKQ+H H  K G    + + + +L  Y K     DA KLF EL V
Sbjct: 54  ANALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSV 113

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE----ALDL 356
                                          ++++SWN +I G+   G   E        
Sbjct: 114 -------------------------------RNVVSWNILIRGIVGCGDANENDSNQQQC 142

Query: 357 FCNMNKLDLRM---DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
           F    ++ L +   D  +   +   C     +++G Q+      +GLD D  + + LVD 
Sbjct: 143 FSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDL 202

Query: 414 YCKCGY---------------------------------DALALFNEMRNTGVKPTIITF 440
           Y +CG                                  +A  +FN MR  G      TF
Sbjct: 203 YAQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTF 262

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
           + +LS CD       G++       +   D ++   S +++++A+   + +A  L + M 
Sbjct: 263 SNLLSICDSLEYYDFGKQ-VHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMV 321

Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
              +V  W++I+   V +G++  G +V + + E+
Sbjct: 322 IR-NVVAWNTII---VGYGNRREGNEVMKLLREM 351


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 171/607 (28%), Positives = 284/607 (46%), Gaps = 99/607 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L+  C +      G  +H   L+   L+S++ + N L+ MY   G  +DA  LF  M
Sbjct: 249 LCSLMSVCASADHFSHGSGIHSLCLRSS-LDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGK 125
            RR+  SWN MI  +++  +   +L+    +   N+   ++  S    A +   AL  GK
Sbjct: 308 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGK 367

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H+ +L   L  + ++G+SL+ +YGK                               C 
Sbjct: 368 MVHAIVLQLSLQRNLLVGNSLITMYGK-------------------------------CN 396

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
            M DA +VF        V +N +I GY    + T+A+ +F  +R  G+  +  T+ ++  
Sbjct: 397 SMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHG 456

Query: 246 ACSSLGFLE-HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
           + +S   L  +G+ +H +  + G + D  VA                             
Sbjct: 457 SFTSSNDLHNYGRPLHAYIIRTGFLSDEYVA----------------------------- 487

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
             N++IT+Y+ CG +E + +IF ++ NK+++SWN++I   +Q G   EAL LF +M    
Sbjct: 488 --NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAG 545

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419
            ++D+  LA  +S+CA+++SLE G Q+       GLDSD  +  + +D Y KCG      
Sbjct: 546 NKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEML 605

Query: 420 ----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCG 451
                                       +A   F +M   G KP  +TF A+LSAC H G
Sbjct: 606 QMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAG 665

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           LV +G  ++++M   + + P I+H  C+VDL  R G   EA   IE+MP   +  +W S+
Sbjct: 666 LVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLIWRSL 725

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L     H +  +GRK A++++ELDP +  AY+ LS+++AT+  W     +R  M+  ++ 
Sbjct: 726 LSSSRTHKNLEIGRKAAKKLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTININ 785

Query: 572 KLPGCSW 578
           K P CSW
Sbjct: 786 KRPACSW 792



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/533 (24%), Positives = 240/533 (45%), Gaps = 58/533 (10%)

Query: 8   LARLLQSCNTH---HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           LA L+ +C        I  G  +H    + G++ +   I   LL +Y   G  +DA  LF
Sbjct: 44  LASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVY-IGTALLHLYGSRGIVSDARRLF 102

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------NDFSWNMLISGFAKADL 118
            EMP RN  SW A++      G+ E++L+ +  M ++      N F+  + + G  + ++
Sbjct: 103 WEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEV 162

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L    Q+ SH++V+GL     + +SL+ ++G                           
Sbjct: 163 PGL----QVASHVIVSGLQNQVSVANSLITMFG--------------------------- 191

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
               N G++ DA ++FDR  +  ++  N+MIS Y      ++  L+F  MR +G+  DA+
Sbjct: 192 ----NLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDAT 247

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL S++S C+S     HG  +H    +  +   V V +AL++ YS  G  SDA  LF  +
Sbjct: 248 TLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307

Query: 299 KVYDTILLNTMITVY----SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
              D I  NTMI+ Y    +S   ++    +F T    + ++++S +   S  G+ I+  
Sbjct: 308 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGK 367

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            +   + +L L+ +     S+I+     +S+E  E+VF  +       D +    L+  Y
Sbjct: 368 MVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPT----HDVVSYNVLIGGY 423

Query: 415 C--KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE 472
              + G  A+ +F+ +R+ G+KP  IT   I  +      +    +   A   +     +
Sbjct: 424 AVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSD 483

Query: 473 IEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL--RGCVAHGDKGL 523
               + ++ ++A+ G L  + N+   +    ++  W++I+     + HG++ L
Sbjct: 484 EYVANSLITMYAKCGNLESSTNIFNSIT-NKNIVSWNAIIAANAQLGHGEEAL 535



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 152/358 (42%), Gaps = 73/358 (20%)

Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
           DRT  T    W + +SG +    D  A  L   MR  GV      LAS+++AC   G  E
Sbjct: 3   DRTPST----WYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDE 58

Query: 255 H---GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
               G  +H    + G++ +V + +ALL  Y  RG+ SDA +LF E              
Sbjct: 59  GIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWE-------------- 104

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
                            MP ++++SW +++V LS NG   E L  +  M +  +  +  +
Sbjct: 105 -----------------MPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVPCNANA 147

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------- 418
            A+V+S C ++ +   G QV + V + GL +   ++ SL+  +   G             
Sbjct: 148 FATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRME 207

Query: 419 -YDALA-------------------LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
            +D ++                   +F++MR+ G++P   T  +++S C        G  
Sbjct: 208 EHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSHGSG 267

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
              ++  +  +D  +   + +V++++ AG L++A  L   M    D+  W++++   V
Sbjct: 268 -IHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMS-RRDLISWNTMISSYV 323



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC---ANISSL 385
           MP+++  +W + + G  + G  + A +L   M +  + +  F+LAS+++AC        +
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAI 443
             G  + A     GL  +  I T+L+  Y   G   DA  LF EM     +  ++++TA+
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEM----PERNVVSWTAL 116

Query: 444 LSACDHCGLVKEGQKWFDAMK 464
           + A    G ++E  + +  M+
Sbjct: 117 MVALSSNGYLEETLRAYRQMR 137


>gi|242036089|ref|XP_002465439.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
 gi|241919293|gb|EER92437.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
          Length = 596

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 177/615 (28%), Positives = 292/615 (47%), Gaps = 86/615 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q C     +  G+QLH   +   +  S   +A++L+ +Y R G   DA        RR
Sbjct: 20  LIQLCADSGHLAAGRQLHARLIALSVTPSNF-LASKLISLYSRTGRLDDA--------RR 70

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI---SGFAKADLAALEYGKQI 127
                                  +F+ +P+ + F+WN ++   S  +    AA+ +    
Sbjct: 71  -----------------------VFDAIPRPSVFAWNAILIALSLHSPDPSAAVRF---- 103

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA------NQVLNMMKEPDD-FCLSALISG 180
                 +G+  D +  S+L+    + G   SA      + V       DD F  + LI+ 
Sbjct: 104 ---FAASGISPDEITLSALLKSLAESGPRLSALVAAEFHAVAVQRGFGDDLFVSNGLITA 160

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR----NGVLED 236
           YAN G    AR VFD+      V WNS+IS Y       E L LF ++       GV  +
Sbjct: 161 YANAGDSRSARAVFDKMPQRDVVSWNSLISAYARAGWYRECLELFQELASVHGAGGVRPN 220

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           + T+AS+L AC+ L  +++G +VH  A + G+  DV V ++ +  Y+K G    A +LF 
Sbjct: 221 SVTVASILHACAQLKAIDYGVRVHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYARELFE 280

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
            +   D +  + MIT Y + G ++    +F+    + +  WN++I GL QNG   E L L
Sbjct: 281 RMPKKDAVSYSAMITGYMNHGHVDKGMELFQRSDAQGISIWNAVIAGLVQNGRQSEVLGL 340

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
              M    +  +  +L+ +I +    S+L   +Q          D    + T+L+D Y K
Sbjct: 341 LNEMIGSGILPNSATLSIIIPSVHLFSTLLGVKQAHGYAIRNNYDQSISVVTALIDAYSK 400

Query: 417 CGY---------------------------------DALALFNEMRNTGVKPTIITFTAI 443
            G+                                 +AL LFNEM N  ++P  I FTA+
Sbjct: 401 AGFLDGSLRVFKSTGDRSKIVWTSIISAVAAHGEAAEALCLFNEMANARIRPDTIAFTAV 460

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           L+AC + G V + +K F++M+  + I+P +E Y+CMV  F+RAG L +A+ L+  MPFE 
Sbjct: 461 LTACAYTGKVADARKVFNSMQVLFGINPVMEQYACMVSAFSRAGMLKDALELVNSMPFEP 520

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           +  +W  +L G    GD  LGR V +R+  ++P+N   YI ++++++ +G+WE++ +IR 
Sbjct: 521 NAKVWGPLLNGAAEFGDVELGRFVFDRLFIIEPKNTGNYIVMANLYSNAGKWEEAEIIRS 580

Query: 564 IMREKHVGKLPGCSW 578
           +M    + K+PGCSW
Sbjct: 581 MMWGVGLEKVPGCSW 595



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 137/336 (40%), Gaps = 79/336 (23%)

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
             V  D      ++  C+  G L  G+Q+H     + V     +AS L+  YS+      
Sbjct: 8   TAVPPDPRAYGHLIQLCADSGHLAAGRQLHARLIALSVTPSNFLASKLISLYSR------ 61

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS-QNGS 349
                                     GR++DA+ +F  +P  S+ +WN++++ LS  +  
Sbjct: 62  -------------------------TGRLDDARRVFDAIPRPSVFAWNAILIALSLHSPD 96

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSL------------ELGEQVF- 392
           P  A+  F       +  D+ +L++++ + A     +S+L              G+ +F 
Sbjct: 97  PSAAVRFFAASG---ISPDEITLSALLKSLAESGPRLSALVAAEFHAVAVQRGFGDDLFV 153

Query: 393 ----------------ARVTIIGLDSDQIIS-TSLVDFYCKCGY--DALALFNEMRNT-- 431
                           AR     +    ++S  SL+  Y + G+  + L LF E+ +   
Sbjct: 154 SNGLITAYANAGDSRSARAVFDKMPQRDVVSWNSLISAYARAGWYRECLELFQELASVHG 213

Query: 432 --GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
             GV+P  +T  +IL AC     +  G +       +  +D ++  ++  V  +A+ G L
Sbjct: 214 AGGVRPNSVTVASILHACAQLKAIDYGVR-VHRFAAENGLDMDVAVWNSTVGFYAKCGKL 272

Query: 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHG--DKGL 523
             A  L E+MP + D   +S+++ G + HG  DKG+
Sbjct: 273 QYARELFERMP-KKDAVSYSAMITGYMNHGHVDKGM 307


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 179/624 (28%), Positives = 291/624 (46%), Gaps = 104/624 (16%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +DT +  L+ + +       +  G+++H H L+ G +   + ++N L+ MY +CG    A
Sbjct: 378 VDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKA 437

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-LISGFAK-ADL 118
             +F  M  R+  SWN +I    + G+ E ++  + +M Q +    N   ISG +  A L
Sbjct: 438 CRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGL 497

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             L  G+Q+H   +  GL  D+ + ++LV +YG+CG  +   ++ N M   D        
Sbjct: 498 GLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHD-------- 549

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED-TEALLLFHKMRRNGVLEDA 237
                                   V WNS++    S+    TE++ +F  M ++G++ + 
Sbjct: 550 -----------------------VVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNK 586

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T  + L+A + L  LE GKQ+H    K GV +D  V +AL+  Y+K G      +LFS 
Sbjct: 587 VTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSR 646

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           +                  GR             +  ISWNSMI G   NG   EA+D  
Sbjct: 647 MS-----------------GR-------------RDAISWNSMISGYIYNGHLQEAMDCV 676

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
           C M   +  MD  + + V++ACA++++LE G ++ A      L+SD ++ ++LVD Y KC
Sbjct: 677 CLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKC 736

Query: 418 ---------------------------------GYDALALFNEMRNTGVKPTIITFTAIL 444
                                            G  AL +F EM+ +G  P  +TF ++L
Sbjct: 737 GRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVL 796

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           SAC H GLV+ G  +F+ M+  Y I P IEHYSC++DL  RAG L++    +++MP + +
Sbjct: 797 SACSHAGLVERGLDYFELME-DYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPN 855

Query: 505 VGMWSSILRGCVAHGDKG---LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
             +W ++L  C     +    LG + +  ++EL+P+N   Y+  S   A  G WE ++  
Sbjct: 856 TLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKA 915

Query: 562 RDIMREKHVGKLPGCSW---ADGI 582
           R  M+   V K  G SW    DG+
Sbjct: 916 RAAMKGAAVKKEAGRSWVTLTDGV 939



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 137/571 (23%), Positives = 251/571 (43%), Gaps = 119/571 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A  L SC    S+ +  QL +  LK G  +S L + + L+  + R G   +A  ++  + 
Sbjct: 286 ATYLSSC----SLGLLDQLFVRVLKSGC-SSDLYVGSALVSAFARHGMLDEAKDIYLGLK 340

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-----LISGFAKADLA--AL 121
            RN  + N +I G +K  H E + ++F  M  ++  + N+     L+S  A+   A   L
Sbjct: 341 ERNAVTLNGLIAGLVKQQHGEAAAEIF--MGARDSAAVNVDTYVVLLSAIAEFSTAEQGL 398

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
             G+++H+H+L  G            ++Y K      +N ++NM               Y
Sbjct: 399 RKGREVHAHVLRAG------------HIYRK---IAVSNGLVNM---------------Y 428

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           A CG ++ A RVF        + WN++I+    N     A++ +  MR+N +        
Sbjct: 429 AKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAI 488

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
           S LS+C+ LG L  G+Q+H  A K G+  D  V++AL+  Y + G  S+  ++F+ +  +
Sbjct: 489 SGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAH 548

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI-EALDLFCNM 360
           D                               ++SWNS++  ++ + +PI E++ +F NM
Sbjct: 549 D-------------------------------VVSWNSIMGVMASSQAPITESVQVFSNM 577

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-Y 419
            K  L  +K +  + ++A   +S LELG+Q+ + +   G+  D  +  +L+  Y K G  
Sbjct: 578 MKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDV 637

Query: 420 DALA-LFNEMRNTGVKPTI----------------------------------ITFTAIL 444
           D+   LF+ M  +G +  I                                   TF+ +L
Sbjct: 638 DSCERLFSRM--SGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVL 695

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           +AC     ++ G +   A   + H++ ++   S +VD++++ G ++ A  +   M  + +
Sbjct: 696 NACASVAALERGME-MHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNE 754

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
              W+S++ G   H   GLGRK  E   E+ 
Sbjct: 755 FS-WNSMISGYARH---GLGRKALEIFEEMQ 781



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 126/538 (23%), Positives = 212/538 (39%), Gaps = 115/538 (21%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           + LHL  +K+G L   L +AN L+  Y +      A  +FD MP RN  SW  +I G + 
Sbjct: 85  ESLHLEVVKRG-LTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVL 143

Query: 85  LGHKEKSLQLFNVMPQK------NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            G  E +  LF  M ++        F++  ++     +    L +  Q+H  +       
Sbjct: 144 SGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTS 203

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           ++ + ++L+++YG C                             + G    A+RVFD T 
Sbjct: 204 NTTVCNALISMYGSC-----------------------------SVGPPILAQRVFDTTP 234

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDAST--------LASVLSACSS 249
               + WN+++S Y    +      LF  M+ +   +E   T         A+ LS+C S
Sbjct: 235 VRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSC-S 293

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           LG L+   Q+     K G   D+ V SAL+  +++ GM  +A  ++  LK  + + LN +
Sbjct: 294 LGLLD---QLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGL 350

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           I         E A  IF    + + ++ ++ +V LS                     + +
Sbjct: 351 IAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSA--------------------IAE 390

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKC----------- 417
           FS A           L  G +V A V   G    +I +S  LV+ Y KC           
Sbjct: 391 FSTAE--------QGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQ 442

Query: 418 --------------------GYDALALFNE--MRNTGVKPTIITFTAILSACDHCGLVKE 455
                               GY   A+ N   MR   + P+     + LS+C   GL+  
Sbjct: 443 LMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAA 502

Query: 456 GQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           GQ+   DA+KW  ++D  +   + +V ++   G ++E   +   M    DV  W+SI+
Sbjct: 503 GQQLHCDAVKWGLYLDTSVS--NALVKMYGECGRMSECWEIFNSMSAH-DVVSWNSIM 557


>gi|116830405|gb|ABK28160.1| unknown [Arabidopsis thaliana]
          Length = 614

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 190/616 (30%), Positives = 297/616 (48%), Gaps = 83/616 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC     +  G+ LH   +K G        A  L+ MYM+    TDAL + DEMP R
Sbjct: 37  LLKSCAKLGDVVQGRILHAQVVKTGFFVDVF-TATALVSMYMKVKQVTDALKVLDEMPER 95

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
              S NA + G ++ G    + ++F                G A+               
Sbjct: 96  GIASVNAAVSGLLENGFCRDAFRMF----------------GDAR--------------- 124

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV--LNMMK--EPDDFCLSALISGYANCGK 186
             V+G   +SV   ++ ++ G CGD     Q+  L M    E + +  ++L+S Y+ CG+
Sbjct: 125 --VSGSGMNSV---TVASVLGGCGDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGE 179

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLS 245
              A R+F++    S V +N+ ISG + N        +F+ MR+    E +  T  + ++
Sbjct: 180 WVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAIT 239

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-VYDTI 304
           AC+SL  L++G+Q+HG   K     + +V +AL+D YSK      A  +F+ELK   + I
Sbjct: 240 ACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLI 299

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNM 360
             N++I+     G+ E A  +F  + ++ L     +WNS+I G SQ G  IEA   F  M
Sbjct: 300 SWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERM 359

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD 420
             + +      L S++SAC++I +L+ G+++   V     + D  + TSL+D Y KCG  
Sbjct: 360 LSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLS 419

Query: 421 -----------------------------------ALALFNEMRNTGVKPTIITFTAILS 445
                                              A+ +F  +R   V+P++ TFTA+LS
Sbjct: 420 SWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLS 479

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC HCG V++G + F  M+ +Y   P  EH  CM+DL  R+G L EA  +I+QM   +  
Sbjct: 480 ACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSS 539

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
              SS+L  C  H D  LG + A ++ EL+PEN   ++ LSSI+A    WE    IR ++
Sbjct: 540 VY-SSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYAALERWEDVESIRQVI 598

Query: 566 REKHVGKLPGCSWADG 581
            +K + KLPG S + G
Sbjct: 599 DQKQLVKLPGLSLSGG 614



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 111/492 (22%), Positives = 205/492 (41%), Gaps = 86/492 (17%)

Query: 129 SHILVNGLDFDSVLGSS--------LVNLYGKCGDFNSAN----QVLNMMKEPDDFCLSA 176
           S+++  G   D +L  S        L+    K GD         QV+      D F  +A
Sbjct: 12  SNLVTGGTSLDVILSHSPNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATA 71

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+S Y    ++ DA +V D   +      N+ +SG + N    +A  +F   R +G   +
Sbjct: 72  LVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMN 131

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           + T+ASVL  C   G +E G Q+H  A K G   +V V ++L                  
Sbjct: 132 SVTVASVLGGC---GDIEGGMQLHCLAMKSGFEMEVYVGTSL------------------ 170

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                        +++YS CG    A  +F  +P+KS++++N+ I GL +NG       +
Sbjct: 171 -------------VSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSV 217

Query: 357 FCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY- 414
           F  M K      +  +  + I+ACA++ +L+ G Q+   V       + ++ T+L+D Y 
Sbjct: 218 FNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYS 277

Query: 415 -CKCGYDALALFNEMRNT--------------------------------GVKPTIITFT 441
            C+C   A  +F E+++T                                G+KP   T+ 
Sbjct: 278 KCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWN 337

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL---IEQ 498
           +++S     G V E  K+F+ M     + P ++  + ++   +    L     +   + +
Sbjct: 338 SLISGFSQLGKVIEAFKFFERMLSVVMV-PSLKCLTSLLSACSDIWTLKNGKEIHGHVIK 396

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
              E D+ + +S++   +  G     R++ +R  E  P++   +  + S +   GE E +
Sbjct: 397 AAAERDIFVLTSLIDMYMKCGLSSWARRIFDR-FEPKPKDPVFWNVMISGYGKHGECESA 455

Query: 559 SLIRDIMREKHV 570
             I +++RE+ V
Sbjct: 456 IEIFELLREEKV 467



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 43/197 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL +C+   ++  GK++H H +K         +   L+ MYM+CG  + A  +FD  
Sbjct: 371 LTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIF-VLTSLIDMYMKCGLSSWARRIFDRF 429

Query: 68  ---PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
              P+   F WN MI G+ K G  E ++++F ++ ++             +  LA     
Sbjct: 430 EPKPKDPVF-WNVMISGYGKHGECESAIEIFELLREEK-----------VEPSLAT---- 473

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----PDDFCLSALIS 179
                        F +VL +        CG+    +Q+  +M+E     P    +  +I 
Sbjct: 474 -------------FTAVLSAC-----SHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMID 515

Query: 180 GYANCGKMNDARRVFDR 196
                G++ +A+ V D+
Sbjct: 516 LLGRSGRLREAKEVIDQ 532


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/591 (27%), Positives = 284/591 (48%), Gaps = 106/591 (17%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q+H   L  G+  +      +L+  Y R  N   A  +F++MP+R+  +WN+MI  + + 
Sbjct: 3   QIHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRT 62

Query: 86  GHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
            + ++ L L+       + P  + F+    ++  A + L  L+ G+ I +  +  G  FD
Sbjct: 63  NYPDEVLNLYYRMISEGIKPDSSTFT----VTLKACSSLMDLDMGEIIWNQAVDFGYGFD 118

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
             + SS++NL                               YA  GKM+ A+ VFD+   
Sbjct: 119 VFVVSSVLNL-------------------------------YAKSGKMDKAKIVFDKMVK 147

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
              V W +MI+G+  +    +A+ ++  M++     D   +  ++ AC+SLG  + G  V
Sbjct: 148 RDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSV 207

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           HGH  +                               E+ + D +L  ++I +Y+  G++
Sbjct: 208 HGHMVR------------------------------REMNM-DNVLQTSLIDMYAKNGKL 236

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
           E A  +F  +P KS+ISW ++I G +QNG   + L     M     + D  SL S +SAC
Sbjct: 237 ELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSAC 296

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------- 418
           A + +L++G+ +   + +  L  D++  T+L+D Y KCG                     
Sbjct: 297 AQVGNLKVGKSLHGHI-VKRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWN 355

Query: 419 ------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        +AL+LF +M+ T + P   TF ++LSAC H GLV+EGQ WF  +  +
Sbjct: 356 AMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDK 415

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
             I P  +HY+CMVDL +RAG + EA  LIE M  +  + +W ++L GC+ H +  +G  
Sbjct: 416 SKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEM 475

Query: 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
           VA++++E +P++   Y+ +S+ F+ + +W+ +++ R IM+   + K+PG S
Sbjct: 476 VAKKILESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYS 526



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 24/234 (10%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ VGK LH H +K+  L+     A  L+ MY +CG  T A  LFD++  R+
Sbjct: 293 LSACAQVGNLKVGKSLHGHIVKRLYLDKVSGTA--LIDMYAKCGALTFARALFDQIEPRD 350

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGK 125
              WNAMI  +   G   ++L LF      N+ P    F+   L+S  + + L  +E G 
Sbjct: 351 LILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFA--SLLSACSHSGL--VEEG- 405

Query: 126 QIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYA 182
           Q   H+L++           + +V+L  + G    A Q++  M  +P      AL+SG  
Sbjct: 406 QYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCL 465

Query: 183 N-----CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231
           N      G+M  A+++ +   D   +    ++S + S  +  +   +F K+ +N
Sbjct: 466 NHKNLLIGEMV-AKKILESNPDDLGIY--VLVSNFFSMAKKWDDAAVFRKIMKN 516


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 180/674 (26%), Positives = 296/674 (43%), Gaps = 140/674 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           + +L +C +   +  GK +    +K G  +  + +   ++ +Y +CG+  +A  +F  + 
Sbjct: 77  SSVLAACASLEELRFGKVVQARVIKCGAED--VFVCTSIVDLYAKCGHMAEAREVFSRIS 134

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYG 124
             +  SW  M+ G+ K      +L++F  M       N  +   +IS   +  +      
Sbjct: 135 NPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVC--EA 192

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN-------------------- 164
            Q+H+ +  +G   D+ + ++L+++  K GD N + +V                      
Sbjct: 193 SQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVNVMVTSFSQ 252

Query: 165 -------------MMKE---PDDF----------CL----------------------SA 176
                        M++E   PD+F          CL                      S+
Sbjct: 253 NKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCLNLGKQVHSYTLKSGLILDLTVGSS 312

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L + Y+ CG + ++  +F       +  W SMISG+       EA+ LF +M   G   D
Sbjct: 313 LFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEGTSPD 372

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
            STLA+VL+ CSSL  L   K++HG+  + G+                RGMP        
Sbjct: 373 ESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGI---------------DRGMP-------- 409

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                   L + ++  YS CG ++ A+ ++  +P    +S +S+I G SQ+G   +   L
Sbjct: 410 --------LGSALVNTYSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLL 461

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F +M      MD ++++S++ A       ELG QV A +T IGL ++  + +SL+  Y K
Sbjct: 462 FRDMVMSGFSMDSYAISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYSK 521

Query: 417 CGY---------------------------------DALALFNEMRNTGVKPTIITFTAI 443
            G                                  +AL ++  M+  G KP  +TF  +
Sbjct: 522 FGSIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVGV 581

Query: 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA 503
           LSAC H GLV+EG    ++M   Y I+PE  HY CMVD   R+G L EA N I   P + 
Sbjct: 582 LSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRPIKP 641

Query: 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563
           D  +W ++L  C  +GD  LG+  A++ IEL+P +A AY+ LS+I A  GEW++    R 
Sbjct: 642 DALVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSLSNILAEVGEWDEVEETRK 701

Query: 564 IMREKHVGKLPGCS 577
           +M+   V K PG S
Sbjct: 702 LMKGTGVQKEPGWS 715



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 202/477 (42%), Gaps = 108/477 (22%)

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKND-FSWNMLISGFA 114
           DA  +F +    N + WN +I G ++  +      LF+ M    QK D ++++ +++  A
Sbjct: 25  DAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGFQKPDSYTYSSVLA--A 82

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
            A L  L +GK + + ++                   KCG               D F  
Sbjct: 83  CASLEELRFGKVVQARVI-------------------KCG-------------AEDVFVC 110

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           ++++  YA CG M +AR VF R ++ S V W  M+SGY  +N+   AL +F +MR +GV 
Sbjct: 111 TSIVDLYAKCGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVE 170

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-------- 286
            ++ T+ SV+SAC     +    QVH    K G   D  VA+AL+   SK G        
Sbjct: 171 INSCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERV 230

Query: 287 ------------------------MPSDACKLFSE----------------LKVYDTILL 306
                                    P  A +LF+                 L V D + L
Sbjct: 231 FEDLDDIRRQNIVNVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCLNL 290

Query: 307 NTMI--------------------TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
              +                    T+YS CG +E++  +F+ +P K    W SMI G ++
Sbjct: 291 GKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNE 350

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
            G   EA+ LF  M       D+ +LA+V++ C+++ SL   +++       G+D    +
Sbjct: 351 YGYLREAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPL 410

Query: 407 STSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
            ++LV+ Y KCG   LA     R   + P  ++ ++++S     GLV++G   F  M
Sbjct: 411 GSALVNTYSKCGSLKLARKVYDRLPEMDP--VSCSSLISGYSQHGLVQDGFLLFRDM 465



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 162/379 (42%), Gaps = 71/379 (18%)

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           S+LI  ++   +  DA +VF  T   +   WN++I+G + N        LFH+M      
Sbjct: 11  SSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGFQK 70

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            D+ T +SVL+AC+SL  L  GK V     K G  +DV V ++++D Y+K          
Sbjct: 71  PDSYTYSSVLAACASLEELRFGKVVQARVIKCGA-EDVFVCTSIVDLYAK---------- 119

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                CG + +A+ +F  + N S++SW  M+ G +++     AL
Sbjct: 120 ---------------------CGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSAL 158

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
           ++F  M    + ++  ++ SVISAC   S +    QV A V   G   D  ++ +L+   
Sbjct: 159 EIFREMRHSGVEINSCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMN 218

Query: 415 CKCG----------------------------------YDALALFNEMRNTGVKPTIITF 440
            K G                                    A+ LF  M   G+ P   + 
Sbjct: 219 SKSGDINLSERVFEDLDDIRRQNIVNVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSV 278

Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
            ++LS  D   L K+   +   +K    +D  +   S +  ++++ G L E+ +L +++P
Sbjct: 279 CSLLSVLDCLNLGKQVHSY--TLKSGLILDLTVG--SSLFTMYSKCGSLEESYSLFQEIP 334

Query: 501 FEADVGMWSSILRGCVAHG 519
           F+ D   W+S++ G   +G
Sbjct: 335 FK-DNACWASMISGFNEYG 352



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 113/251 (45%), Gaps = 34/251 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C++  S+   K++H + L+ GI +  +P+ + L+  Y +CG+   A  ++D +
Sbjct: 376 LAAVLTVCSSLPSLPRSKEIHGYTLRAGI-DRGMPLGSALVNTYSKCGSLKLARKVYDRL 434

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEYGK 125
           P  +  S +++I G+ + G  +    LF  M        +  IS   KA + +   E G 
Sbjct: 435 PEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKAAVLSEESELGA 494

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H++I   GL  +  +GSSL+ +Y K G      +  + +  PD    +ALI+ YA  G
Sbjct: 495 QVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQINGPDLIAWTALIASYAQHG 554

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           K N                               EAL ++  M+  G   D  T   VLS
Sbjct: 555 KAN-------------------------------EALQVYCLMKEKGFKPDKVTFVGVLS 583

Query: 246 ACSSLGFLEHG 256
           ACS  G +E G
Sbjct: 584 ACSHGGLVEEG 594



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 41/232 (17%)

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           ++ +++I  +S   R EDA  +FR   + ++  WN++I G  +N +     DLF  M   
Sbjct: 8   VVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNG 67

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----- 418
             + D ++ +SV++ACA++  L  G+ V ARV   G + D  + TS+VD Y KCG     
Sbjct: 68  FQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGHMAEA 126

Query: 419 ----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                       + AL +F EMR++GV+    T T+++SAC   
Sbjct: 127 REVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRP 186

Query: 451 GLVKEGQK---WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
            +V E  +   W    K  +++D  +   + ++ + +++G +N +  + E +
Sbjct: 187 SMVCEASQVHAW--VFKSGFYLDTSVA--AALISMNSKSGDINLSERVFEDL 234


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 151/487 (31%), Positives = 246/487 (50%), Gaps = 41/487 (8%)

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           G+  D+ + SSL++ Y + G    A  VL+ M        SALI+ +A+ G    A  + 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 195 DRT----TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
           +R      + + + WN ++SG   +    +A+L   +M   G L DA+ ++  LSA   +
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
           G +  G+Q+HG+  K G   D  VA+AL+D Y K G   +  ++F E    D    N ++
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
              S   ++ +A  +FR    + +    +SW S++    QNG  +EA+DLF  M    + 
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIE 289

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            +  ++  V+ A ANI++L  G          G   D  + ++LVD Y KCG        
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMI 349

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +A+ LF  M+++  KP ++TFT +L AC   G  
Sbjct: 350 FEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWT 409

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG+ +F+ M+ ++ I P +EHY+CMV L  RAG L++A ++I QMPFE D  +W S+L 
Sbjct: 410 EEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLG 469

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  HG+  L    AE + +L+PENA  Y+ LS+I+A+   W+  + +RD+M+   + K 
Sbjct: 470 SCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKE 529

Query: 574 PGCSWAD 580
            GCSW +
Sbjct: 530 KGCSWIE 536



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 174/377 (46%), Gaps = 48/377 (12%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--- 99
           +A+ LL  Y+R G   DA  + D MP R    W+A+I      G  E +  L   M    
Sbjct: 57  VASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDG 116

Query: 100 -QKNDFSWNMLISGF---------------------------------AKADLAALEYGK 125
            + N  +WN L+SG                                  A  D+  +  G+
Sbjct: 117 VEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGE 176

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+H +++  G   D+ + ++L+++YGKCG  +   +V +     D    +AL++G +   
Sbjct: 177 QLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNA 236

Query: 186 KMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
           ++++A R+F     R  + + V W S+++  + N  D EA+ LF +M+  G+  ++ T+ 
Sbjct: 237 QVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIP 296

Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
            VL A +++  L HG+  H  + + G   D+ V SAL+D Y+K G   DA  +F  +   
Sbjct: 297 CVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR 356

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPIEALDLF 357
           + +  N MI  Y+  G  E+A  +FR+M +      L+++  ++   SQ G   E    F
Sbjct: 357 NVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYF 416

Query: 358 CNMNK---LDLRMDKFS 371
             M     +  RM+ ++
Sbjct: 417 NEMQHKHGISPRMEHYA 433



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 154/382 (40%), Gaps = 83/382 (21%)

Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
           +S    T ++L F  +R      D   L S L +CS+L            A   GV  D 
Sbjct: 1   MSTRSTTSSVLNF--LRHVSFPPDPRLLPSALKSCSALRLARALHAA---AAVAGVSRDA 55

Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM--- 329
            VAS+LL  Y + G  +DA  +   +     +  + +I  ++S G  E A  +   M   
Sbjct: 56  FVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSD 115

Query: 330 ---PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 386
              PN  +I+WN ++ GL+++G   +A+     M+      D   ++  +SA  ++  + 
Sbjct: 116 GVEPN--VITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVA 173

Query: 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------------------- 419
           +GEQ+   V   G   D  ++T+L+D Y KCG                            
Sbjct: 174 VGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLS 233

Query: 420 ------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-- 471
                 +AL LF E    G++  ++++T+I++ C   G   E    F  M+ +  I+P  
Sbjct: 234 RNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE-GIEPNS 292

Query: 472 ---------------------------------EIEHYSCMVDLFARAGCLNEAVNLIEQ 498
                                            +I   S +VD++A+ G + +A  + E 
Sbjct: 293 VTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEA 352

Query: 499 MPFEADVGMWSSILRGCVAHGD 520
           MP+  +V  W++++ G   HG+
Sbjct: 353 MPYR-NVVSWNAMIGGYAMHGE 373



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 107/274 (39%), Gaps = 69/274 (25%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + VG+QLH + +K G       +A  L+ MY +CG   + + +FDE    +  S NA++ 
Sbjct: 172 VAVGEQLHGYVVKAGCRLDAC-VATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVA 230

Query: 81  GFMKLGHKEKSLQLFNVMPQK----NDFSWNMLIS---------------------GF-- 113
           G  +     ++L+LF     +    N  SW  +++                     G   
Sbjct: 231 GLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEP 290

Query: 114 ----------AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
                     A A++AAL +G+  H   L  G   D  +GS+LV++Y KCG    A  + 
Sbjct: 291 NSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIF 350

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
             M   +    +A+I GYA  G+  +A R                               
Sbjct: 351 EAMPYRNVVSWNAMIGGYAMHGEAENAVR------------------------------- 379

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
           LF  M+ +    D  T   VL ACS  G+ E G+
Sbjct: 380 LFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGR 413



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+  H   L+KG  +  + + + L+ MY +CG   DA ++F+ MP RN  SWNAMI G+ 
Sbjct: 311 GRSAHCFSLRKG-FHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYA 369

Query: 84  KLGHKEKSLQLFNVM---PQKNDFSWNMLISGFAKADLAALEYGKQI-----HSHILVNG 135
             G  E +++LF  M    +K D      + G A +     E G+       H H +   
Sbjct: 370 MHGEAENAVRLFRSMQSSKEKPDLVTFTCVLG-ACSQAGWTEEGRSYFNEMQHKHGISPR 428

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           ++  +     +V L G+ G  + A  ++N M    D C+
Sbjct: 429 MEHYAC----MVTLLGRAGKLDDAYDIINQMPFEPDGCI 463


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 182/623 (29%), Positives = 299/623 (47%), Gaps = 86/623 (13%)

Query: 8   LARLLQSCNTHHSIHVGK--QLHLHFLKKGILNS--TLPIANRLLQMYMRCGNPTDA--- 60
           L  LL   +T H    G+  QLH H L  G+++S    P+A+RL++      +P  +   
Sbjct: 6   LCPLLAILSTRHPPSAGRLLQLHAHLLTAGLMSSRSPFPLASRLVEALAHSDDPRHSPRP 65

Query: 61  ------LLLFDEMPRRNCFSWNAMIEGF---MKLGHKEKSLQLFNVM---PQKNDFSWNM 108
                 LL     P  +   +NA +         G   + L L+  +    + +  ++  
Sbjct: 66  LLHALALLASLPTPPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSARPDHLTFPF 125

Query: 109 LISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 168
           L+   A+  L    YG              ++VLG+                 VL++   
Sbjct: 126 LLKACAR--LQERNYG--------------NAVLGN-----------------VLSLGFH 152

Query: 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
            D F ++A +   A C  M +AR++FD +     V WN++I GY+      EAL +F +M
Sbjct: 153 ADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRM 212

Query: 229 RRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
             +G V  D  T+  V+S  + L  LE G+++HG+    GV   V + + ++D Y K G 
Sbjct: 213 VGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGD 272

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
              A  +F  +     +   TMI  Y+  G ++DA+ +F  MP + +  WN+++ G  Q 
Sbjct: 273 LERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQC 332

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
               EAL LF +M +  +  D  ++ +++SAC+ + +LE+G  V   +    +    ++ 
Sbjct: 333 KRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLG 392

Query: 408 TSLVDFYCKCGY---------------------------------DALALFNEMRNTGVK 434
           T+LVD Y KCG                                   A+  F  M   G++
Sbjct: 393 TNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQ 452

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P  ITF  +LSAC H GLVKEGQ++F  M  +YH++ +++HYSCMVDL  RAG L+EA +
Sbjct: 453 PDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEH 512

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
           L+  MP E D  +W ++   C  HG+  LG K A +++ELDP ++  Y+ L++++A +  
Sbjct: 513 LVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANM 572

Query: 555 WEKSSLIRDIMREKHVGKLPGCS 577
            +K+  +R +MR   V K+PGCS
Sbjct: 573 RKKADKVRVMMRHLGVEKVPGCS 595


>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 598

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 181/613 (29%), Positives = 295/613 (48%), Gaps = 80/613 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q C     +   +Q+H   +   +  S   +A++L+ +Y R     DA  +FD +P+ 
Sbjct: 20  LIQLCAESGHLAAARQIHARLVAASVTPSNF-LASKLISLYSRADRLRDARRVFDSIPQP 78

Query: 71  NCFSWNA-MIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKAD--LAALEYGKQ 126
           + F+WNA +I   +       +++LF +     ++ + + L+   A +   L+ L  G +
Sbjct: 79  SLFAWNAILISLSLHSPDPSAAVRLFASSAVSPDEITLSTLLRSLAASGPALSPLVTG-E 137

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H+   + G       GS L                         F  +ALI+ YAN G 
Sbjct: 138 LHAVAFLRGF------GSDL-------------------------FVSNALITAYANAGD 166

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR------NGVLEDASTL 240
           M  AR VFD       V WNS+IS         E L LF +  R      +GV  +  T+
Sbjct: 167 MRSARAVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTV 226

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
            SVL AC+ L  ++ G  VH  A + G+  D+ V ++++  Y+K G    A +L   +  
Sbjct: 227 TSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTR 286

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            D+I  + MIT Y + G +E+   +FR    + +  WNS+I GL QNG   + L L   M
Sbjct: 287 KDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQEM 346

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS--TSLVDFYCKCG 418
               +  +  +L+ V+ +  + S+L   +Q  A    I  D DQ I   ++L+D Y K G
Sbjct: 347 IASKVLPNSATLSIVMPSVPSFSTLLGAKQ--AHGYAIRNDYDQSIRLVSALIDAYAKAG 404

Query: 419 Y---------------------------------DALALFNEMRNTGVKPTIITFTAILS 445
           +                                 +AL+LFN+M   G KP  +TFT +LS
Sbjct: 405 FLDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLS 464

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H G V E +K F++M+  + I P IE Y+CMV   +RAG L EAV L+ +MPFE + 
Sbjct: 465 ACAHSGKVAEARKVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKLVNKMPFEPNA 524

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
            +W ++L G    GD   GR   +R+  ++P+N   YI ++++++ +G+WE++  IR ++
Sbjct: 525 KVWGALLNGAAVVGDVEFGRYAFDRLFVIEPKNTGNYIVMANLYSNAGKWEEAETIRSML 584

Query: 566 REKHVGKLPGCSW 578
               + K+PGC+W
Sbjct: 585 WGVGLEKVPGCTW 597



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 116/307 (37%), Gaps = 79/307 (25%)

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM--- 287
             V  D      ++  C+  G L   +Q+H       V     +AS L+  YS+      
Sbjct: 8   TAVPPDPRAYGHLIQLCAESGHLAAARQIHARLVAASVTPSNFLASKLISLYSRADRLRD 67

Query: 288 -----------------------------PSDACKLFSELKVY-DTILLNT--------- 308
                                        PS A +LF+   V  D I L+T         
Sbjct: 68  ARRVFDSIPQPSLFAWNAILISLSLHSPDPSAAVRLFASSAVSPDEITLSTLLRSLAASG 127

Query: 309 -----------------------------MITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
                                        +IT Y++ G +  A+ +F  MP + ++SWNS
Sbjct: 128 PALSPLVTGELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNS 187

Query: 340 MIVGLSQNGSPIEALDLFCNMNKL------DLRMDKFSLASVISACANISSLELGEQVFA 393
           +I   ++ G   E LDLF    ++       +  +  ++ SV+ ACA +  ++ G  V  
Sbjct: 188 LISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHR 247

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                GLD D  +  S++ FY KCG   L    ++ +   +   I+++A+++   + G V
Sbjct: 248 FAAESGLDMDMAVWNSIIGFYAKCGR--LQYARQLLDGMTRKDSISYSAMITGYMNNGHV 305

Query: 454 KEGQKWF 460
           +EG + F
Sbjct: 306 EEGMQLF 312


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 174/591 (29%), Positives = 286/591 (48%), Gaps = 102/591 (17%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH    K G   +++ + N LL  Y + G    A  +F EMP R+  ++NAMI G  + G
Sbjct: 155 LHPVVTKLG-FGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQG 213

Query: 87  HKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVL 142
              ++L+LF  M ++    + F+++ L++      +  L  G+QIH              
Sbjct: 214 RHGEALELFAAMRREGVDTSHFTFSSLLT--VATGMVDLHLGRQIH-------------- 257

Query: 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 202
                      G F  AN   N+      F  +AL+  Y+ C  + D +++FD  ++  +
Sbjct: 258 -----------GLFVRANPSCNV------FVNNALLDFYSKCDSLGDLKQLFDEMSERDN 300

Query: 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           V +N MIS    N     AL LF  M+  G        AS+LS   +L  ++ G+Q+H  
Sbjct: 301 VSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQ 360

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
               G+  +  V +AL+D YSK                               CG ++ A
Sbjct: 361 LILHGLTLEDFVGNALIDMYSK-------------------------------CGMLDAA 389

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
           K IF    +K+ ISW ++I G  QNG   EAL LFC+M +  L  D+ + +S++ + +++
Sbjct: 390 KTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSL 449

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------ 418
           + + +G Q+ A +T  G        ++L+D Y KCG                        
Sbjct: 450 AVIGIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVI 509

Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
                     +A+ +F+ M + G+ P  +TF ++L+AC H GL +E  K+FD M++ Y +
Sbjct: 510 SAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSM 569

Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
            P  EHYSC++D   RAGC ++   +I++MPFE D  +WSSIL  C  +G++ L    AE
Sbjct: 570 SPWKEHYSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAE 629

Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           ++  + P +A AY+ LS+I+A +G WE ++ ++ IMR++ V K  G SW +
Sbjct: 630 KLFTMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVE 680



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 197/484 (40%), Gaps = 99/484 (20%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIH 128
           RRN  +W  M+      G    ++ LF           +ML  G A  D         I 
Sbjct: 99  RRNAKTWTIMMRMLPADGRGSDAVSLFR----------DMLREGEASPDDVT------IT 142

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
           + + V G D       +L  +  K G F ++  V N            L+  Y   G + 
Sbjct: 143 TVLNVPGCDV-----GTLHPVVTKLG-FGASVVVCN-----------TLLDAYCKQGFIA 185

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            ARRVF       S+ +N+MI G        EAL LF  MRR GV     T +S+L+  +
Sbjct: 186 AARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELFAAMRREGVDTSHFTFSSLLTVAT 245

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            +  L  G+Q+HG   +     +V V +ALLD YSK     D  +LF E+   D +  N 
Sbjct: 246 GMVDLHLGRQIHGLFVRANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNV 305

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           MI   S+C                   SWN    G+        AL LF +M  L     
Sbjct: 306 MI---SAC-------------------SWNR-CGGM--------ALQLFRDMQTLGFDRR 334

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------- 419
               AS++S    +  +++G Q+ A++ + GL  +  +  +L+D Y KCG          
Sbjct: 335 TLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFA 394

Query: 420 ------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                   +AL LF +MR  G+ P   T ++I+ +     ++  
Sbjct: 395 YKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGI 454

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G++    +    H+ P +   S ++D++A+ GCL+EA+    +MP E +   W++++   
Sbjct: 455 GRQLHAYLTKSGHM-PSVFSGSALLDMYAKCGCLDEAIRTFNEMP-EKNSITWNAVISAY 512

Query: 516 VAHG 519
             +G
Sbjct: 513 AQYG 516



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 3/196 (1%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D R    A LL        I +G+Q+H   +  G+      + N L+ MY +CG    A 
Sbjct: 332 DRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDF-VGNALIDMYSKCGMLDAAK 390

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADLA 119
            +F     +   SW A+I G ++ G  E++LQLF  M +   +           + + LA
Sbjct: 391 TIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLA 450

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            +  G+Q+H+++  +G       GS+L+++Y KCG  + A +  N M E +    +A+IS
Sbjct: 451 VIGIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVIS 510

Query: 180 GYANCGKMNDARRVFD 195
            YA  G+  +A R+FD
Sbjct: 511 AYAQYGQAKNAIRMFD 526



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I +G+QLH +  K G + S     + LL MY +CG   +A+  F+EMP +N  +WNA+I 
Sbjct: 452 IGIGRQLHAYLTKSGHMPSVFS-GSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVIS 510

Query: 81  GFMKLGHKEKSLQLFNVM 98
            + + G  + ++++F+ M
Sbjct: 511 AYAQYGQAKNAIRMFDSM 528


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 180/612 (29%), Positives = 290/612 (47%), Gaps = 105/612 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   L+S        +G QL    LK G+ N+    A+ LL +Y +CG   DA  +FD M
Sbjct: 96  LGSALRSAAVARRPAIGAQLQSLALKSGLANNVFA-ASALLDVYAKCGRVRDARQVFDGM 154

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA--KADLAALEYGK 125
           P RN  SWNA+I G+ + G    +L+LF  M ++          G A  +A  A+L    
Sbjct: 155 PERNTVSWNALIAGYTESGDMASALELFLEMERE----------GLAPDEATFASLLTAV 204

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +  S  L++              L+GK   + SA  +           L+A I+ Y+ CG
Sbjct: 205 EGPSCFLMH-------------QLHGKIVKYGSALGLT---------VLNAAITAYSQCG 242

Query: 186 KMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHK-MRRNGVLEDASTLASV 243
            + D+RR+FD   D   ++ WN+M+  Y  N  D EA+  F + M+ +GV  D  +  S+
Sbjct: 243 SLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSI 302

Query: 244 LSACSSLGFLEH-GKQVHGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELK 299
           +S+CS  G  +H G+ +HG   K  +     V +AL+  Y++     M  DA K F+ L 
Sbjct: 303 ISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLV 362

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + DT+  N+M+T YS  G   DA   FR M                            C+
Sbjct: 363 LKDTVSWNSMLTGYSQHGLSADALKFFRCM----------------------------CS 394

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
            N   +R D+++ ++ + + + ++ L+LG+Q+   V   G  S+  +S+SL+  Y K G 
Sbjct: 395 EN---VRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGI 451

Query: 419 ------------------YDAL--------------ALFNEMRNTGVKPTIITFTAILSA 446
                             ++A+               LFNEM         ITF  ++++
Sbjct: 452 IDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITS 511

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GLV EG +  + M+ +Y +   +EHY+C VDL+ RAG L++A  LI+ MPFE D  
Sbjct: 512 CSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAM 571

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C  HG+  L   VA  +   +P     Y+ LSS+++  G W   + ++ +M+
Sbjct: 572 VWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMK 631

Query: 567 EKHVGKLPGCSW 578
           ++ + K+PG SW
Sbjct: 632 KRGLSKVPGWSW 643



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 187/460 (40%), Gaps = 85/460 (18%)

Query: 18  HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP--TDALLLFDEMPRRNCFSW 75
           HH      + H   LK G+   T P  N+LL  Y R        A  +FDE+PRR+  SW
Sbjct: 4   HHLAVAAARSHASLLKSGVAAPT-PW-NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSW 61

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHI 131
           NA++      G   ++ +L   M  +    N F+    +   A A   A+  G Q+ S  
Sbjct: 62  NALLAAQAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAI--GAQLQSLA 119

Query: 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
           L +GL  +    S+L+++Y KCG    A QV + M E +    +ALI+GY   G M    
Sbjct: 120 LKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDM---- 175

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
                                        AL LF +M R G+  D +T AS+L+A     
Sbjct: 176 ---------------------------ASALELFLEMEREGLAPDEATFASLLTAVEGPS 208

Query: 252 -FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
            FL H  Q+HG   K G    + V +A +  YS+ G   D+ ++F  +            
Sbjct: 209 CFLMH--QLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGI------------ 254

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN-MNKLDLRMDK 369
                 G I D            LISWN+M+   + NG   EA+  F   M +  +  D 
Sbjct: 255 ------GDIRD------------LISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDM 296

Query: 370 FSLASVISACANISSLE-LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-----YDALA 423
           +S  S+IS+C+     +  G  +   V    L+    +  +L+  Y +        DA  
Sbjct: 297 YSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYK 356

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
            FN +    V    +++ ++L+     GL  +  K+F  M
Sbjct: 357 CFNSL----VLKDTVSWNSMLTGYSQHGLSADALKFFRCM 392



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 27/346 (7%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           ARRVFD       V WN++++   ++    EA  L   M   G+  +   L S L + + 
Sbjct: 46  ARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAV 105

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
                 G Q+   A K G+ ++V  ASALLD Y+K G   DA ++F  +   +T+  N +
Sbjct: 106 ARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNAL 165

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           I  Y+  G +  A  +F  M  + L    +    L    + +E    F  M++L  ++ K
Sbjct: 166 IAGYTESGDMASALELFLEMEREGLAPDEATFASLL---TAVEGPSCFL-MHQLHGKIVK 221

Query: 370 FS-------LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD-- 420
           +        L + I+A +   SL+   ++F     IG   D I   +++  Y   G D  
Sbjct: 222 YGSALGLTVLNAAITAYSQCGSLKDSRRIF---DGIGDIRDLISWNAMLGAYTHNGMDDE 278

Query: 421 ALALF-NEMRNTGVKPTIITFTAILSAC------DHCGLVKEGQKWFDAMKWQYHIDPEI 473
           A+  F   M+ +GV P + +FT+I+S+C      DH G V  G     A++    + P  
Sbjct: 279 AMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALE---GVTPVC 335

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
                M   +     + +A      +  + D   W+S+L G   HG
Sbjct: 336 NALIAMYTRYNENCMMEDAYKCFNSLVLK-DTVSWNSMLTGYSQHG 380


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 179/577 (31%), Positives = 268/577 (46%), Gaps = 103/577 (17%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK- 101
           ++  LL MY + G  +DA  +FD M  RN  SW AM+ G+      E++ +LF +M QK 
Sbjct: 160 VSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKC 219

Query: 102 ----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
               N+F    ++S  +      L  G Q+H  +L +GL     + +SLV +Y K     
Sbjct: 220 PLEKNEFVTTAVLSAVSVP--LGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAK----- 272

Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
                                   A C  M+ A RVF  + + +S+ W++MI+GY  N E
Sbjct: 273 ------------------------AEC--MDAAMRVFGSSKERNSITWSAMITGYAQNGE 306

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
              A  +F +M  +G      T   VL+ACS +G L  GKQ H    K+G    V V SA
Sbjct: 307 ANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSA 366

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLIS 336
           L+D Y+K                               CG I DAK  F  + +   ++ 
Sbjct: 367 LVDMYAK-------------------------------CGCIGDAKDGFHQLYDVDDVVL 395

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
           W +MI G  QNG   EAL L+  M+K  +     ++ SV+ ACA +++L+LG+Q+ A++ 
Sbjct: 396 WTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQIL 455

Query: 397 IIGLDSDQIISTSLVDFYCKCG---------------------------------YDALA 423
                    + T+L   Y KCG                                  DAL 
Sbjct: 456 KCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALD 515

Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
           +F EM+  G  P  ITF  +LSAC H GLV  G  +F AM   Y++ P ++HY+CMVD+ 
Sbjct: 516 MFEEMKLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDIL 575

Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543
           +RAG L EA + I+ +  +    +W  +L  C +  D  +G    E+++EL  E++ AYI
Sbjct: 576 SRAGQLKEAKDFIDSITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYI 635

Query: 544 QLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            LS+I+A   +W     +R +MR + V K  GCSW +
Sbjct: 636 LLSNIYAAQRKWNDVERVRHLMRLRGVSKDLGCSWVE 672



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 131/558 (23%), Positives = 232/558 (41%), Gaps = 102/558 (18%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP--TDA 60
           +   ++  L  + ++  +   G+ LH   LK G   S  P++N L+  Y     P    A
Sbjct: 12  SHAQFIEHLRCAASSDRTPRTGEALHGWALKSGA-ASHAPVSNSLITFYCSLPRPLLGAA 70

Query: 61  LLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL 118
            ++F ++P   R+  SWN+++    +  H   +L  F  M    +    +L S  + A  
Sbjct: 71  YVVFADIPAALRDVASWNSLLNPLSR-HHPVSALSHFRSMMSSPE---AVLPSPHSFAAA 126

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
                         V      +V  +    L   CG  N              F  +AL+
Sbjct: 127 FTAA--------ARVPSASAGAVTHALACKLPSSCGSNNV-------------FVSTALL 165

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DA 237
           + Y   G ++DA+RVFD     ++V W +M+SGY +     EA  LF  M +   LE + 
Sbjct: 166 NMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKCPLEKNE 225

Query: 238 STLASVLSACS-SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
               +VLSA S  LG L  G Q+HG   K G++  V V ++L+  Y+K      A ++F 
Sbjct: 226 FVTTAVLSAVSVPLGLL-MGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMRVFG 284

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
             K  ++I  + MIT                               G +QNG    A  +
Sbjct: 285 SSKERNSITWSAMIT-------------------------------GYAQNGEANCAARM 313

Query: 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416
           F  M+       +F+   V++AC+++ +L +G+Q    +  +G ++   + ++LVD Y K
Sbjct: 314 FLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAK 373

Query: 417 CG------------YD----------------------ALALFNEMRNTGVKPTIITFTA 442
           CG            YD                      AL L++ M   G+ P+ +T T+
Sbjct: 374 CGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTS 433

Query: 443 ILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
           +L AC     +  G++     +K ++ +   +   + +  ++++ G L +++ +  +MP 
Sbjct: 434 VLRACACLAALDLGKQLHAQILKCRFSLGGSVG--TALSTMYSKCGNLEDSMVVFRRMP- 490

Query: 502 EADVGMWSSILRGCVAHG 519
           + DV  W+SI+     HG
Sbjct: 491 DRDVISWNSIISVFSQHG 508



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 35/249 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PR 69
           +L +C+   ++ VGKQ H   +K G   + + + + L+ MY +CG   DA   F ++   
Sbjct: 332 VLNACSDMGALVVGKQTHCLMVKLG-FETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDV 390

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYGKQI 127
            +   W AMI G ++ G  E++L L++ M ++      + ++   +A   LAAL+ GKQ+
Sbjct: 391 DDVVLWTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQL 450

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
           H+ IL         +G++L  +Y KCG+   +  V   M + D    +++IS ++  G+ 
Sbjct: 451 HAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRG 510

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           +D                               AL +F +M+  G   D  T  ++LSAC
Sbjct: 511 SD-------------------------------ALDMFEEMKLEGTAPDHITFINLLSAC 539

Query: 248 SSLGFLEHG 256
           S +G ++ G
Sbjct: 540 SHMGLVDRG 548



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 152/366 (41%), Gaps = 72/366 (19%)

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
           WNS+++  +S +    AL  F  M  +   VL    + A+  +A + +     G   H  
Sbjct: 87  WNSLLNP-LSRHHPVSALSHFRSMMSSPEAVLPSPHSFAAAFTAAARVPSASAGAVTHAL 145

Query: 263 ACKVGVI---DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           ACK+      ++V V++ALL+ Y K G  SD                             
Sbjct: 146 ACKLPSSCGSNNVFVSTALLNMYCKLGAVSD----------------------------- 176

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISA 378
             AK +F  M +++ +SW +M+ G +      EA +LF  M  K  L  ++F   +V+SA
Sbjct: 177 --AKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSA 234

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------------- 417
            +    L +G Q+   V   GL     +  SLV  Y K                      
Sbjct: 235 VSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSITW 294

Query: 418 -----GYD-------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
                GY        A  +F +M ++G  PT  TF  +L+AC   G +  G++    M  
Sbjct: 295 SAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMV- 353

Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
           +   + ++   S +VD++A+ GC+ +A +   Q+    DV +W++++ G V +G+     
Sbjct: 354 KLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEAL 413

Query: 526 KVAERM 531
            +  RM
Sbjct: 414 MLYSRM 419


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 175/585 (29%), Positives = 279/585 (47%), Gaps = 100/585 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C+    ++VG  +H   L  G  +S + + N LL MYM CG    A  +F+ M +R
Sbjct: 190 VIKACSVMSMLNVGVLIHGRALVSG-FSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKR 248

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN-VMPQKNDFSWNMLISGFAK-ADLAALEYGKQIH 128
           +  SWN MI G+ + G  E++L +FN +M  + +     ++S       L  LE G ++H
Sbjct: 249 SVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVH 308

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
             +  N L     + ++LV++Y +                               CG M+
Sbjct: 309 KLVQKNHLQEKIEVRNALVDMYSR-------------------------------CGGMD 337

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
           +A  VF  T +   + W SMI+GYI N     AL L   M+ +GV+ +A TLAS+LSAC+
Sbjct: 338 EASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACA 397

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           SL  L+ GK +H    +  +  DV+V +AL+D Y+K                        
Sbjct: 398 SLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAK------------------------ 433

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  C  +  +  +F     K  + WN+++ GL  N    EA+ LF +M   ++  +
Sbjct: 434 -------CNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEAN 486

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD 420
             +  SVI A A ++ L+    + + +   G  S   + T L+D Y KCG        +D
Sbjct: 487 HATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFD 546

Query: 421 ---------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                      A+ LFN+M ++G++P  ITFT++L AC H GLV
Sbjct: 547 EIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLV 606

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
            +G   F  M   Y   P   HY+C+VDL  RAG L+EA +LI+ MPF+ +  +W ++L 
Sbjct: 607 DDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLG 666

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
            C+ H +  LG   AER+ EL+PE+   YI L++I+A  G W+ +
Sbjct: 667 ACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKDA 711



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 141/545 (25%), Positives = 241/545 (44%), Gaps = 114/545 (20%)

Query: 20  SIHVGKQLHLHFLKKGILNST--LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA 77
           S++  K LH H +  G+L+S   + + + L   Y  CG    A  LFD++   + F WNA
Sbjct: 94  SLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNA 153

Query: 78  MIEGFMKLGHKEKSLQLFNVM-------PQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
           +I+ ++  G    +L++F+ M       P K  +++ ++I   A + ++ L  G  IH  
Sbjct: 154 IIKMYVDKGFHFDALRVFDSMICSGKCWPDK--YTFPLVIK--ACSVMSMLNVGVLIHGR 209

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
            LV+G   +  + +SL+ +Y  CG    A QV N+M +      + +ISG          
Sbjct: 210 ALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISG---------- 259

Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
                                +  N    EAL +F+ M    V  D++T+ S L +C  L
Sbjct: 260 ---------------------WFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHL 298

Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
             LE G +VH    K  + + + V +AL+D YS+ G   +A  +F+E K           
Sbjct: 299 KELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETK----------- 347

Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDK 369
                                K +I+W SMI G   NG+   AL L C   +LD +  + 
Sbjct: 348 --------------------EKDVITWTSMINGYIMNGNAKSALAL-CPAMQLDGVVPNA 386

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMR 429
            +LAS++SACA++  L+ G+ + A V    LDSD ++ T+L+D Y KC   + + F    
Sbjct: 387 VTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYS-FQVFA 445

Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ---------------YHIDPEIE 474
            T +K T + + A+LS   H  L +E    F +M  +               Y I  +++
Sbjct: 446 KTSMKRT-VPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLK 504

Query: 475 HY-------------------SCMVDLFARAGCLNEAVNLIEQMP-FEADVGMWSSILRG 514
                                + ++D++++ G L+ A  + +++P  E D+ +WS ++ G
Sbjct: 505 QVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAG 564

Query: 515 CVAHG 519
              HG
Sbjct: 565 YGMHG 569


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 180/612 (29%), Positives = 290/612 (47%), Gaps = 105/612 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   L+S        +G QL    LK G+ N+    A+ LL +Y +CG   DA  +FD M
Sbjct: 96  LGSALRSAAVARRPAIGAQLQSLALKSGLANNVFA-ASALLDVYAKCGRVRDARQVFDGM 154

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA--KADLAALEYGK 125
           P RN  SWNA+I G+ + G    +L+LF  M ++          G A  +A  A+L    
Sbjct: 155 PERNTVSWNALIAGYTESGDMASALELFLEMERE----------GLAPDEATFASLLTAV 204

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           +  S  L++              L+GK   + SA  +           L+A I+ Y+ CG
Sbjct: 205 EGPSCFLMH-------------QLHGKIVKYGSALGLT---------VLNAAITAYSQCG 242

Query: 186 KMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHK-MRRNGVLEDASTLASV 243
            + D+RR+FD   D   ++ WN+M+  Y  N  D EA+  F + M+ +GV  D  +  S+
Sbjct: 243 SLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSI 302

Query: 244 LSACSSLGFLEH-GKQVHGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELK 299
           +S+CS  G  +H G+ +HG   K  +     V +AL+  Y++     M  DA K F+ L 
Sbjct: 303 ISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLV 362

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           + DT+  N+M+T YS  G   DA   FR M                            C+
Sbjct: 363 LKDTVSWNSMLTGYSQHGLSADALKFFRCM----------------------------CS 394

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG- 418
            N   +R D+++ ++ + + + ++ L+LG+Q+   V   G  S+  +S+SL+  Y K G 
Sbjct: 395 EN---VRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGI 451

Query: 419 ------------------YDAL--------------ALFNEMRNTGVKPTIITFTAILSA 446
                             ++A+               LFNEM         ITF  ++++
Sbjct: 452 IDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITS 511

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C H GLV EG +  + M+ +Y +   +EHY+C VDL+ RAG L++A  LI+ MPFE D  
Sbjct: 512 CSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAM 571

Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
           +W ++L  C  HG+  L   VA  +   +P     Y+ LSS+++  G W   + ++ +M+
Sbjct: 572 VWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMK 631

Query: 567 EKHVGKLPGCSW 578
           ++ + K+PG SW
Sbjct: 632 KRGLSKVPGWSW 643



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 177/433 (40%), Gaps = 83/433 (19%)

Query: 45  NRLLQMYMRCGNP--TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK- 101
           N+LL  Y R        A  +FDE+PRR+  SWNA++      G   ++ +L   M  + 
Sbjct: 29  NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQG 88

Query: 102 ---NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
              N F+    +   A A   A+  G Q+ S  L +GL  +    S+L+++Y KCG    
Sbjct: 89  LASNTFALGSALRSAAVARRPAI--GAQLQSLALKSGLANNVFAASALLDVYAKCGRVRD 146

Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
           A QV + M E +    +ALI+GY   G M                               
Sbjct: 147 ARQVFDGMPERNTVSWNALIAGYTESGDM------------------------------- 175

Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASA 277
             AL LF +M R G+  D +T AS+L+A      FL H  Q+HG   K G    + V +A
Sbjct: 176 ASALELFLEMEREGLAPDEATFASLLTAVEGPSCFLMH--QLHGKIVKYGSALGLTVLNA 233

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
            +  YS+ G   D+ ++F  +                  G I D            LISW
Sbjct: 234 AITAYSQCGSLKDSRRIFDGI------------------GDIRD------------LISW 263

Query: 338 NSMIVGLSQNGSPIEALDLFCN-MNKLDLRMDKFSLASVISACANISSLE-LGEQVFARV 395
           N+M+   + NG   EA+  F   M +  +  D +S  S+IS+C+     +  G  +   V
Sbjct: 264 NAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLV 323

Query: 396 TIIGLDSDQIISTSLVDFYCKCG-----YDALALFNEMRNTGVKPTIITFTAILSACDHC 450
               L+    +  +L+  Y +        DA   FN +    V    +++ ++L+     
Sbjct: 324 IKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSL----VLKDTVSWNSMLTGYSQH 379

Query: 451 GLVKEGQKWFDAM 463
           GL  +  K+F  M
Sbjct: 380 GLSADALKFFRCM 392



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 27/346 (7%)

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           ARRVFD       V WN++++   ++    EA  L   M   G+  +   L S L + + 
Sbjct: 46  ARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAV 105

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
                 G Q+   A K G+ ++V  ASALLD Y+K G   DA ++F  +   +T+  N +
Sbjct: 106 ARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNAL 165

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           I  Y+  G +  A  +F  M  + L    +    L    + +E    F  M++L  ++ K
Sbjct: 166 IAGYTESGDMASALELFLEMEREGLAPDEATFASLL---TAVEGPSCFL-MHQLHGKIVK 221

Query: 370 FS-------LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD-- 420
           +        L + I+A +   SL+   ++F     IG   D I   +++  Y   G D  
Sbjct: 222 YGSALGLTVLNAAITAYSQCGSLKDSRRIF---DGIGDIRDLISWNAMLGAYTHNGMDDE 278

Query: 421 ALALF-NEMRNTGVKPTIITFTAILSAC------DHCGLVKEGQKWFDAMKWQYHIDPEI 473
           A+  F   M+ +GV P + +FT+I+S+C      DH G V  G     A++    + P  
Sbjct: 279 AMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALE---GVTPVC 335

Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
                M   +     + +A      +  + D   W+S+L G   HG
Sbjct: 336 NALIAMYTRYNENCMMEDAYKCFNSLVLK-DTVSWNSMLTGYSQHG 380


>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
 gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
          Length = 806

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 173/585 (29%), Positives = 276/585 (47%), Gaps = 107/585 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G Q+H   ++  I  + + + N L+ MY+RCG   +AL +F +MP RN  SW +MI    
Sbjct: 268 GIQIH-DKIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVA 326

Query: 84  KLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK-ADLAALEYGKQIHSHILVNGLDF 138
           + GH   S++LF+ M  +    N+ ++  ++S  A     A L+ G++IHS I  +G+D 
Sbjct: 327 QTGHYSFSVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDA 386

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D ++ +SL+N+Y + G    A                               R VFD   
Sbjct: 387 DPIVQNSLINMYARSGLLAEA-------------------------------REVFDSIL 415

Query: 199 DTSS--VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
           + S   V + +MIS Y  N    +AL +F +M   GV  +  T A+VL+AC ++G L  G
Sbjct: 416 ENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASG 475

Query: 257 KQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
             +H    + G+   D    ++L+D Y+K G    A ++F                    
Sbjct: 476 AWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFE------------------- 516

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                       TM  K L++W ++I    Q+G+   ALDL+  M +  +  D  +L+++
Sbjct: 517 ------------TMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTL 564

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD------- 420
           + ACAN+  L +GE++  +     L+ D     +L   Y KCG        Y        
Sbjct: 565 LVACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDV 624

Query: 421 ------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                             AL L+ EM + GV+P  +TF  +L +C   GLV EG+++F +
Sbjct: 625 ATWTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHS 684

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           +   Y   P  EH+ CMVD+  RAG L +A  L++ MPF  D   W S+L  C  H D  
Sbjct: 685 ITSDYGSQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAE 744

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           +G + AE ++ELDPE+   ++ LS I+A +G   ++S I +I RE
Sbjct: 745 IGTRAAECLLELDPESTSQFVALSQIYAAAG---RNSDIDEIKRE 786



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 158/641 (24%), Positives = 268/641 (41%), Gaps = 153/641 (23%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C    ++  G+++H H + + +  + L +   + QMY RC     A+ LFD MP
Sbjct: 54  ANLLRQCGNQRALDHGRRVHAHIVSRRLARNAL-LGELVFQMYARCRCFDTAIALFDAMP 112

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALE 122
            R  F WN +++ F+       +L+L+      N  P    F W ++  G  K DLA   
Sbjct: 113 DRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIK-DLA--- 168

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+ IH  +   G   +S + S+LV +Y +CG  + A    +  +E      +A++S  A
Sbjct: 169 QGRSIHYRV-ATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALA 227

Query: 183 NCGKMNDARRVF---------DRTT----------------------------DTSSVMW 205
             G    A  +F         DR+                              T  ++ 
Sbjct: 228 GAGHHRRAIELFFQMEQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVL 287

Query: 206 NSMISGYISNNEDTEALLLFHKM-RRN------------------------------GVL 234
           N++IS Y+   +  EAL +F  M  RN                              G+ 
Sbjct: 288 NALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGIN 347

Query: 235 EDASTLASVLSACSSLG---FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
            +  T ASV+SA + LG    L+ G+++H      G+  D IV ++L++ Y++ G+ ++A
Sbjct: 348 PNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEA 407

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
                  +V+D+IL N+                       K+++S+ +MI   + NG P 
Sbjct: 408 ------REVFDSILENS-----------------------KTVVSFTTMISAYAHNGHPR 438

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSL 410
           +AL++F  M    +  ++ + A+V++AC  I  L  G  +  R+   GLD SD     SL
Sbjct: 439 QALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSL 498

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           VD Y KCG                                   AL L++ M  +G+ P I
Sbjct: 499 VDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDI 558

Query: 438 ITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            T + +L AC + G +  G+K    A++ +   D   +  + +  ++A+ G L +A  L 
Sbjct: 559 ATLSTLLVACANLGDLAMGEKIHRQALRSKLEQDAHFQ--NALAAMYAKCGSLEKATRLY 616

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
            +    +DV  W+S+L    AH  +GL     E   E++ E
Sbjct: 617 RRCR-GSDVATWTSML---AAHSQQGLASVALELYAEMESE 653



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/513 (19%), Positives = 202/513 (39%), Gaps = 91/513 (17%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL++G+++H+HI+   L  +++LG  +  +Y +C  F++A  + + M +   FC      
Sbjct: 65  ALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMPDRRPFC------ 118

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                                    WN ++  +++ +   + L L+ +M        A  
Sbjct: 119 -------------------------WNVLMKEFLAADRPRDTLELYRRMSVENTQPSACG 153

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
               + AC  +  L  G+ +H +    G   +  + SAL+  Y++ G    A   F + +
Sbjct: 154 FMWAIVACGRIKDLAQGRSIH-YRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNR 212

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-------------------------- 333
              T   N +++  +  G    A  +F  M                              
Sbjct: 213 ELGTAPWNAIMSALAGAGHHRRAIELFFQMEQHQCSDRSCAIALGACAAAGHLRGGIQIH 272

Query: 334 -----------LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
                      ++  N++I    + G   EAL +F +M   ++     S  S+I+A A  
Sbjct: 273 DKIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNV----VSWTSMIAAVAQT 328

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDAL-----ALFNEMRNTGVKPTI 437
                  ++F  +   G++ ++    S+V      G DA+      + +++  +G+    
Sbjct: 329 GHYSFSVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADP 388

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           I   ++++     GL+ E ++ FD++         +  ++ M+  +A  G   +A+ +  
Sbjct: 389 IVQNSLINMYARSGLLAEAREVFDSI---LENSKTVVSFTTMISAYAHNGHPRQALEIFR 445

Query: 498 QMPFEADVG---MWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATS 552
           +M           ++++L  CVA GD   G  + ERMIE  LD  +  AY  L  ++A  
Sbjct: 446 EMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKC 505

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWADGIAFN 585
           G+   ++ + + M+ K +      +W   IA N
Sbjct: 506 GDLGFAARVFETMKTKDL-----VAWTTIIAAN 533



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 132/321 (41%), Gaps = 40/321 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA-NRLLQMYMRCGNPTDALLLFDE 66
            A +L +C     +  G  +H   ++ G L+S+ P A N L+ MY +CG+   A  +F+ 
Sbjct: 459 FATVLAACVAIGDLASGAWIHERMIESG-LDSSDPFAYNSLVDMYAKCGDLGFAARVFET 517

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYG 124
           M  ++  +W  +I   ++ G+   +L L++ M Q         +S    A A+L  L  G
Sbjct: 518 MKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMG 577

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           ++IH   L + L+ D+   ++L  +Y KCG    A                         
Sbjct: 578 EKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKAT------------------------ 613

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                  R++ R   +    W SM++ +      + AL L+ +M   GV  +  T   VL
Sbjct: 614 -------RLYRRCRGSDVATWTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVL 666

Query: 245 SACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-D 302
            +CS  G +  G++  H      G          ++D   + G   DA +L   +  Y D
Sbjct: 667 ISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPD 726

Query: 303 TILLNTMITVYSSCGRIEDAK 323
            I   +++   SSC    DA+
Sbjct: 727 EIAWQSLL---SSCKLHTDAE 744


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 178/623 (28%), Positives = 294/623 (47%), Gaps = 104/623 (16%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           DT +  L+ L +   +   + +G+ +H H L+ G+ +  + ++N L+ MY +CG    A 
Sbjct: 376 DTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESAS 435

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-LISGFAK-ADLA 119
            +F  M   +  SWN +I    + G+ E+++  +++M Q      N  LIS  +  A L 
Sbjct: 436 KIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLK 495

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
            L  G+Q+H   +  GLD D+ + + LV +YG+CG  +   +V N M E D+        
Sbjct: 496 LLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDE-------- 547

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED-TEALLLFHKMRRNGVLEDAS 238
                                  V WN+M+    S+    +E + +F+ M R G++ +  
Sbjct: 548 -----------------------VSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKV 584

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T  ++L+A S L  LE GKQVH    K GV++D +V +AL+  Y+K G       LF+ +
Sbjct: 585 TFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNM 644

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                                            +  ISWNSMI G   NG+  EA+D   
Sbjct: 645 S------------------------------DRRDAISWNSMISGYIYNGNLQEAMDCVW 674

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC- 417
            M      MD  + + +++ACA++++LE G ++ A      L+SD ++ ++LVD Y KC 
Sbjct: 675 LMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCG 734

Query: 418 --------------------------------GYDALALFNEMRNTGVKPTIITFTAILS 445
                                           G  A+ +F EM  +   P  +TF ++LS
Sbjct: 735 RVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLS 794

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC H GLV+ G ++F+ M   + I P+IEHYSC++DL  RAG +++    I++MP E + 
Sbjct: 795 ACSHAGLVERGLEYFEMMP-DHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNA 853

Query: 506 GMWSSILRGCVAHGDKG---LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
            +W ++L  C    D     LGR+ +  ++E++P+N   Y+  S+  A +G WE ++  R
Sbjct: 854 LIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKAR 913

Query: 563 DIMREKHVGKLPGCSWA---DGI 582
             MR+    K  G SW    DG+
Sbjct: 914 TAMRQATEKKEAGRSWVTLNDGV 936



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 133/553 (24%), Positives = 225/553 (40%), Gaps = 101/553 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLH-FLKKGILNSTLPIANRLLQMYMRC--GNPTDALLLFDEM 67
           LL++C       +G  + +H  + K    S   + N L+ MY  C  G P  A  +FD  
Sbjct: 171 LLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGT 230

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
           P R+  +WNA++  + K G    +  LF  M Q+ D    +  +      L         
Sbjct: 231 PIRDLITWNALMSVYAKKGDVASTFTLFKDM-QRGDSRIQLRPTEHTFGSLITAASLSSG 289

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
            S +L      D VL                   VL      D +  SAL+S +A  G  
Sbjct: 290 SSAVL------DQVL-----------------VWVLKSGCSSDLYVGSALVSAFARHGLT 326

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
           ++A+ +F      ++V  N +I G +  +   EA+ +F    RN V  +A T   +LSA 
Sbjct: 327 DEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGT-RNTVDVNADTYVVLLSAL 385

Query: 248 SSLGFLEH----GKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +     E     G+ VHGH  + G+ D  + V++ L++ Y+K G    A K+F  ++  D
Sbjct: 386 AEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATD 445

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            I  NT+I+                                L QNG+  EA+  +  M +
Sbjct: 446 RISWNTIIS-------------------------------ALDQNGNCEEAVMHYSLMRQ 474

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
             +    F+L S +S+CA +  L  G+QV       GLD D  +S  LV  Y +CG    
Sbjct: 475 SCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSD 534

Query: 419 ----YDALA--------------------------LFNEMRNTGVKPTIITFTAILSACD 448
               ++++A                          +FN M   G+ P  +TF  +L+A  
Sbjct: 535 YWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALS 594

Query: 449 HCGLVKEGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
              +++ G++   A MK     D  ++  + ++  +A++G +    +L   M    D   
Sbjct: 595 PLSVLELGKQVHAAVMKHGVMEDNVVD--NALISCYAKSGDMGSCEHLFTNMSDRRDAIS 652

Query: 508 WSSILRGCVAHGD 520
           W+S++ G + +G+
Sbjct: 653 WNSMISGYIYNGN 665



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 117/540 (21%), Positives = 212/540 (39%), Gaps = 118/540 (21%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           + LH+  +K+G LN  L + N L+  Y +      A  +FDEMP RN  SW  ++ G++ 
Sbjct: 81  ENLHVELIKRG-LNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVL 139

Query: 85  LGHKEKSLQLFNVMPQK-------NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
            G  E++ ++F  M ++         F++  L+          L +  Q+H  +      
Sbjct: 140 HGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYA 199

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            ++ + ++L+++YG C                               G    A+RVFD T
Sbjct: 200 SNTTVCNALISMYGSC-----------------------------TVGPPILAQRVFDGT 230

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG----VLEDASTLASVLSACSSLGFL 253
                + WN+++S Y    +      LF  M+R      +     T  S+++A S     
Sbjct: 231 PIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGS 290

Query: 254 EHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
                QV     K G   D+ V SAL+  +++ G+  +A  +F  LK             
Sbjct: 291 SAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLK------------- 337

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFS 371
                              K+ ++ N +IVGL +     EA+ +F    N +D+  D + 
Sbjct: 338 ------------------QKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYV 379

Query: 372 LASVISACANIS----SLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCGY------- 419
           +  ++SA A  S     L +G  V   +   GL   +I +S  LV+ Y KCG        
Sbjct: 380 V--LLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKI 437

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                     +A+  ++ MR + + P+     + LS+C    L+
Sbjct: 438 FQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLL 497

Query: 454 KEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
             GQ+   DA+KW   +D  +   + +V ++   G +++   +   M  E D   W++++
Sbjct: 498 TAGQQVHCDAVKWGLDLDTSVS--NVLVKMYGECGAMSDYWKVFNSMA-EHDEVSWNTMM 554


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 165/521 (31%), Positives = 261/521 (50%), Gaps = 49/521 (9%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSL--VNLYG 151
           +FN + +     WN +I G +K+D         IH +   N + +  + GS L  + L+ 
Sbjct: 28  VFNQIQRPTLLVWNHMIHGLSKSDRP----NDAIHFY---NTMYYKGIQGSHLTFIFLFK 80

Query: 152 KCGDFNSANQ----VLNMMK---EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 204
            C   +   Q     ++ MK   E   F  +ALI  Y   G++  A++VFD   +   V 
Sbjct: 81  SCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVS 140

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           WNS+I GY   N   + L LF +M+   V  D+ T+   +SA   L   E G  +  +  
Sbjct: 141 WNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYID 200

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
           + GV+ D+ + + L+D Y +RGM   A ++F ++K  + +  N MI  Y+  G +  AK 
Sbjct: 201 EHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKK 260

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
           +F  MP++ +ISW SMI+G S      EA+ LF  M    ++ D+ ++A+ +SACA++ S
Sbjct: 261 LFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGS 320

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------- 419
           L+ GE V   +    + SD  +  SL+D YCKCG                          
Sbjct: 321 LDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISG 380

Query: 420 --------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                    AL +F++M   G+ PT  TF  +L AC H GLV +G + F +M+  Y + P
Sbjct: 381 LAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAP 440

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           E++HY C+VDL  R+G L+ A N I++MP   DV +W  +L  C  HG+  L   V++++
Sbjct: 441 EMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKL 500

Query: 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
           + LDP N   Y+  SS +A S  W+    IR +M   ++ K
Sbjct: 501 LVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQK 541



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 219/447 (48%), Gaps = 37/447 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L +SC     +  G+ + +H +K G  + +  ++N L+ MY+  G    A  +FD M  R
Sbjct: 78  LFKSCARVSDVRQGQMVRVHSMKLGFESXSF-VSNALIHMYVCFGELAMAQKVFDGMLER 136

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGKQIH 128
           +  SWN++I G+ +    +K L LF  M   N    S  M+ +  A   L+  E G  + 
Sbjct: 137 DVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLV 196

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            +I  +G+  D  LG++L+++YG+ G  + A +V   MKE +    +A+I GYA  G + 
Sbjct: 197 KYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLV 256

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            A+++F+       + W SMI GY    +  EA+ LF +M  + V  D  T+A+ LSAC+
Sbjct: 257 AAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACA 316

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            LG L+ G+ VH +  K  +  DV V ++L+D Y K G+   A ++F+++K  D+     
Sbjct: 317 HLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDS----- 371

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                                     +SW S+I GL+ NG    AL++F  M K  +   
Sbjct: 372 --------------------------VSWTSIISGLAVNGFAESALNVFDQMLKEGICPT 405

Query: 369 KFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGYDALALFNE 427
             +   V+ ACA++  ++ G + F  +     L  +      +VD  C+ GY  +A +N 
Sbjct: 406 HGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMA-YNF 464

Query: 428 MRNTGVKPTIITFTAILSACD-HCGLV 453
           ++   + P ++ +  +LSAC  H  LV
Sbjct: 465 IKKMPIVPDVVIWRILLSACKLHGNLV 491



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 169/429 (39%), Gaps = 98/429 (22%)

Query: 170 DDFCLSALISGYA-NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228
           D   +S +I  YA +   +  A  VF++    + ++WN MI G   ++   +A+  ++ M
Sbjct: 4   DPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTM 63

Query: 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288
              G+     T   +  +C+ +  +  G+ V  H+ K+G      V++AL+  Y      
Sbjct: 64  YYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMY------ 117

Query: 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 348
              C  F EL +                     A+ +F  M  + ++SWNS+I G  Q  
Sbjct: 118 --VC--FGELAM---------------------AQKVFDGMLERDVVSWNSIICGYYQFN 152

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
              + LDLF  M  +++R D  ++   ISA   +S  E+G+ +   +   G+  D  +  
Sbjct: 153 RFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGN 212

Query: 409 SLVDFYCKCG---------------------------------YDALALFNEMRN----- 430
           +L+D Y + G                                   A  LFNEM +     
Sbjct: 213 TLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVIS 272

Query: 431 --------------------------TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                                     + VKP  IT    LSAC H G +  G+   D ++
Sbjct: 273 WTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIR 332

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
            ++ I  ++   + ++D++ + G + +A+ +   M     V  W+SI+ G   +G     
Sbjct: 333 -KHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVS-WTSIISGLAVNGFAESA 390

Query: 525 RKVAERMIE 533
             V ++M++
Sbjct: 391 LNVFDQMLK 399



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L +C    S+  G+ +H  +++K  + S + + N L+ MY +CG    AL +F++M
Sbjct: 308 VATALSACAHLGSLDAGEAVH-DYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDM 366

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
             R+  SW ++I G    G  E +L +F+ M
Sbjct: 367 KTRDSVSWTSIISGLAVNGFAESALNVFDQM 397


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 166/549 (30%), Positives = 275/549 (50%), Gaps = 78/549 (14%)

Query: 73  FSWN-----AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQI 127
           F WN     ++I  + + G    +  LF+ MP ++  SWN +ISG  +   AA      +
Sbjct: 246 FQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA--QALDV 303

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV-LNMMK---EPDDFCLSALISGYAN 183
              + + G+  + V   S++ +  + GD ++A  + L ++K   E D F  +ALI+ YA 
Sbjct: 304 LDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAK 363

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G + DAR+ F +   T  V WNS+I+ Y  N++   A   F KM+ NG   D  TL S+
Sbjct: 364 FGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSL 423

Query: 244 LSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
            S  +     ++ + VHG   + G +++DV++ +A++D                      
Sbjct: 424 ASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD---------------------- 461

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                    +Y+  G ++ A  +F  +P K +ISWN++I G +QNG   EA++++  M +
Sbjct: 462 ---------MYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 512

Query: 363 L-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-- 419
             ++  ++ +  S++ A A++ +L+ G ++  RV    L  D  ++T L+D Y KCG   
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLV 572

Query: 420 -------------------------------DALALFNEMRNTGVKPTIITFTAILSACD 448
                                            L LF EM + GVKP  +TF ++LSAC 
Sbjct: 573 DAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACS 632

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
           H G V+EG KW   +  +Y I P ++HY CMVDL  RAG L  A + I+ MP + D  +W
Sbjct: 633 HSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIW 691

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L  C  HG+  LG+  ++R+ E+D +N   Y+ LS+I+A  G+WE    +R + RE+
Sbjct: 692 GALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARER 751

Query: 569 HVGKLPGCS 577
            + K PG S
Sbjct: 752 GLKKTPGWS 760



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 139/586 (23%), Positives = 243/586 (41%), Gaps = 113/586 (19%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
            K LH   +  G + S   I+ RL+ +Y   G+ + +   FD++P+++ ++WN+MI  ++
Sbjct: 135 AKCLHALLVVAGKVQSIF-ISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 84  KLGHKEKSL----QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
             GH  +++    QL  V   + DF          KA    L  G++IH      G  ++
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDF---YTFPPVLKA-CGTLVDGRKIHCWAFKLGFQWN 249

Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
             + +SL+++Y + G                        +G         AR +FD    
Sbjct: 250 VFVAASLIHMYSRFG-----------------------FTGI--------ARSLFDDMPF 278

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
                WN+MISG I N    +AL +  +MR  G+  +  T+ S+L  C  LG +     +
Sbjct: 279 RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLI 338

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H +  K G+  D+ V++AL++ Y+K G   DA K F ++ + D                 
Sbjct: 339 HLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITD----------------- 381

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
                         ++SWNS+I    QN  P+ A   F  M     + D  +L S+ S  
Sbjct: 382 --------------VVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 380 ANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCGY------------------- 419
           A     +    V   +   G L  D +I  ++VD Y K G                    
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISW 487

Query: 420 --------------DALALFNEMRN-TGVKPTIITFTAILSACDHCGLVKEGQKWFD-AM 463
                         +A+ ++  M     + P   T+ +IL A  H G +++G K     +
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI 547

Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL--RGCVAHGDK 521
           K   H+D  +   +C++D++ + G L +A++L  Q+P E+ V  W++I+   G   H +K
Sbjct: 548 KTNLHLDVFVA--TCLIDVYGKCGRLVDAMSLFYQVPQESSV-TWNAIISCHGIHGHAEK 604

Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
            L +   E + E    +   ++ L S  + SG  E+      +M+E
Sbjct: 605 TL-KLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE 649



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 125/537 (23%), Positives = 220/537 (40%), Gaps = 96/537 (17%)

Query: 136 LDFDSVLGSSLVNLYGKC--GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 193
           +DF+ +  SS    + KC       A +V ++      F  + L++ YAN G ++ +R  
Sbjct: 120 IDFNFLFDSSTKTPFAKCLHALLVVAGKVQSI------FISTRLVNLYANLGDVSLSRCT 173

Query: 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-MRRNGVLEDASTLASVLSACSSLGF 252
           FD+        WNSMIS Y+ N    EA+  F++ +  + +  D  T   VL AC   G 
Sbjct: 174 FDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GT 230

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
           L  G+++H  A K+G   +V VA++L+  YS+ G    A  LF +               
Sbjct: 231 LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDD--------------- 275

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
                           MP + + SWN+MI GL QNG+  +ALD+   M    ++M+  ++
Sbjct: 276 ----------------MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTV 319

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------- 418
            S++  C  +  +     +   V   GL+ D  +S +L++ Y K G              
Sbjct: 320 VSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFI 379

Query: 419 ------------YD-------ALALFNEMRNTGVKP---TIITFTAILSACDHCGLVKEG 456
                       Y+       A   F +M+  G +P   T+++  +I++    C   +  
Sbjct: 380 TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSV 439

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             +     W   +  ++   + +VD++A+ G L+ A  + E +P + DV  W++++ G  
Sbjct: 440 HGFIMRRGW---LMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLITGYA 495

Query: 517 AHGDKGLGRKVAERMIELDP--ENACAYIQLSSIFATSGEWEKSSLI--RDIMREKHVGK 572
            +G      +V + M E      N   ++ +   +A  G  ++   I  R I    H+  
Sbjct: 496 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDV 555

Query: 573 LPGCSWADGIAFNCWFLDTMFLQLANFDEIKQHQSADF-----CDYIHGFDQARLPL 624
                  D        +D M L    F ++ Q  S  +     C  IHG  +  L L
Sbjct: 556 FVATCLIDVYGKCGRLVDAMSL----FYQVPQESSVTWNAIISCHGIHGHAEKTLKL 608



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 10/231 (4%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  G ++H   +K   L+  + +A  L+ +Y +CG   DA+ LF ++P+ +  +WNA+I
Sbjct: 535 ALQQGMKIHGRVIKTN-LHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAII 593

Query: 80  EGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
                 GH EK+L+LF  M     + +  ++  L+S  + +    +E GK     +   G
Sbjct: 594 SCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGF--VEEGKWCFRLMQEYG 651

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISGYANCGKMNDARRVF 194
           +         +V+L G+ G    A   + +M  +PD     AL+      G +   +   
Sbjct: 652 IKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFAS 711

Query: 195 DR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           DR    D+ +V +  ++S   +N    E +     + R   L+     +++
Sbjct: 712 DRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTI 762


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 168/596 (28%), Positives = 284/596 (47%), Gaps = 109/596 (18%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K LH H LK G L S     ++L+  Y++C   T+A  LFDEMP R+  +WN+MI   + 
Sbjct: 21  KSLHTHILKSGSLFSFF--GHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVS 78

Query: 85  LGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            G  +++++L++      V+P  + ++++ +   F  +++     G++ H   +V G + 
Sbjct: 79  RGKTKEAIELYDNMLFEGVLP--DAYTFSAIFKAF--SEMGVSREGQKAHGLAVVLGFEV 134

Query: 139 -DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
            D  + + +V++Y K G    A  V + + + D    +ALI GY   G   +A  VF+  
Sbjct: 135 SDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFE-- 192

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                     M+   I  NE                     TLASVL +C +LG L +GK
Sbjct: 193 ---------DMVGSRIKPNE--------------------YTLASVLVSCGNLGDLVNGK 223

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
            +HG   K G+   V   ++LL  YSK                               C 
Sbjct: 224 LIHGLVVKSGLESVVASQTSLLTMYSK-------------------------------CN 252

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            +ED+  +F ++   S ++W S IVGL QNG    AL +F  M +  +  + F+ +S++ 
Sbjct: 253 MVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILH 312

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------------------- 417
           AC++++ LE GEQ+ A    +G+D ++ +  +L+  Y KC                    
Sbjct: 313 ACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVS 372

Query: 418 -------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                        G++AL LF  M+  G KP ++TF +IL AC++ GLV+EG + F  ++
Sbjct: 373 INTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIR 432

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             + I+   +HY+CM+DL  RA    EA  LIE+     DV  W ++L  C  HG+  + 
Sbjct: 433 NNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWRTLLNACKIHGEVEMA 491

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            K  ++M++  P +   +I L++I+A++G+W+    ++   R+  + K P  SW D
Sbjct: 492 EKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVD 547


>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 753

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/602 (28%), Positives = 279/602 (46%), Gaps = 96/602 (15%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C     +  GK LH   +  G L+  + + N L+ MY +CG    A+ LFD    R+  S
Sbjct: 159 CGERCDLDFGKLLHGLVVVNG-LSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVS 217

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-----DLAALEYGKQIHS 129
           WN++I G++++G  E+ L L   M +         +    KA     +   +E G  IH 
Sbjct: 218 WNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHC 277

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
           +    G++FD V+ ++L+++Y K G    A ++ ++M   +    +A+ISG+    +M+D
Sbjct: 278 YAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFL---QMDD 334

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
                                  I++   +EA  LF +M+R G+    ST + VL ACS+
Sbjct: 335 -----------------------ITDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSA 371

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
              LE+G+Q+H   CK     D  + SAL                               
Sbjct: 372 AKTLEYGRQIHALICKNNFQSDEFIGSAL------------------------------- 400

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           I +Y+  G  ED    F +   + + SW S+I    QN     A DLF  +    +R ++
Sbjct: 401 IELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEE 460

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
           ++++ ++SACA+ ++L  GEQ+       G+D+   + TS +  Y K G           
Sbjct: 461 YTVSLMMSACADFAALSSGEQIQGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVFIE 520

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                 +DAL +F  M+  G+KP    F  +L AC H GLV  G
Sbjct: 521 VQNPDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIACCHGGLVTHG 580

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
             +F  MK  Y I+P  +H++C+ DL  R G L++A NLI    F+    MW ++L  C 
Sbjct: 581 VNYFQTMKNSYGINPNEKHFTCLADLLGRTGRLSDAENLILSSGFQDHPVMWRALLSSCR 640

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            + D  +G++VAER++EL+PE + +Y+ L +I+  SG    +  +R++MR++ V K P  
Sbjct: 641 VYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPAL 700

Query: 577 SW 578
           SW
Sbjct: 701 SW 702



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 142/574 (24%), Positives = 242/574 (42%), Gaps = 126/574 (21%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L Q+     S+ +GK  H H +K  +      + N LL MY +C     A  LFD MP 
Sbjct: 53  KLFQTAAKSGSLVLGKLAHGHMVKSSLNPCLY-LLNNLLNMYCKCRELGFARQLFDRMPE 111

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-------DLAALE 122
           RN  S+N++I G+ ++G  E++++LF  +  ++D   N+ +  F  A       +   L+
Sbjct: 112 RNIISFNSLISGYTQVGFYEQAMELF--LEARDD---NLKLDKFTYAGALGFCGERCDLD 166

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           +GK +H  ++VNGL     L + L+++Y KCG  + A  + +   E D    ++LISGY 
Sbjct: 167 FGKLLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYV 226

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
             G                                  E L L  KM R G+      L S
Sbjct: 227 RVGAAE-------------------------------EPLNLLAKMHRAGLKLTTYALGS 255

Query: 243 VLSACS---SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
           VL AC    + G +E G  +H +A K+G+  D++V +ALLD Y+K G   +A KLFS   
Sbjct: 256 VLKACCINLNEGLMEKGMAIHCYAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFS--- 312

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-----NGSPIEAL 354
                                        MP K+++++N+MI G  Q     + +  EA 
Sbjct: 313 ----------------------------LMPAKNVVTYNAMISGFLQMDDITDEASSEAF 344

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
            LF  M +  L     + + V+ AC+   +LE G Q+ A +      SD+ I ++L++ Y
Sbjct: 345 KLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELY 404

Query: 415 CKCG---------------------------------YDALALFNEMRNTGVKPTIITFT 441
              G                                   A  LF ++ ++ ++P   T +
Sbjct: 405 ALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVS 464

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM----VDLFARAGCLNEAVNLIE 497
            ++SAC     +  G++        Y I   I+ Y+ +    + ++A++G +  A  +  
Sbjct: 465 LMMSACADFAALSSGEQI-----QGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVFI 519

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           ++    DV  +S+++     HG       + E M
Sbjct: 520 EVQ-NPDVATYSAMISSLAQHGSAHDALNIFESM 552


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/505 (29%), Positives = 254/505 (50%), Gaps = 45/505 (8%)

Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL--SALI 178
           L   + +H+   V+GL  D  + SSL++ Y + G   +A  + + M  P    +  SAL+
Sbjct: 33  LPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALV 92

Query: 179 SGYANCGKMNDARRVF-----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
           + +A  G    A R+      D   + + + WN ++SG   +    +A++    M   G+
Sbjct: 93  AAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGL 152

Query: 234 LE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           L  DA+ ++  LSA   +G +  G+Q+HG+A K G   D  V +AL+D Y K G  ++  
Sbjct: 153 LRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVV 212

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLISWNSMIVGLSQNG 348
           ++F E    D    N +I   S   ++ +A  +F+   ++    +++SW S++    QNG
Sbjct: 213 RVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNG 272

Query: 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408
             +EA++ F  M       +  ++  V+ A AN+++L  G          G   D  +S+
Sbjct: 273 KDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSS 332

Query: 409 SLVDFYCKCG---------------------------------YDALALFNEMRNTGVKP 435
           +LVD Y KCG                                  +A+ +F+ M     KP
Sbjct: 333 ALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKP 392

Query: 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL 495
            ++TFT +L+AC   GL +EG+ +F  M  +Y + P +EHY+CMV L  RAG L+EA +L
Sbjct: 393 DMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDL 452

Query: 496 IEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555
           I  MPFE D  +W S+L  C  HG+  L    AE++  L+PENA  Y+ LS+I+A+   W
Sbjct: 453 ISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMW 512

Query: 556 EKSSLIRDIMREKHVGKLPGCSWAD 580
           ++ + +R++M++  + K  GCSW +
Sbjct: 513 DRVNRVREMMKDVGLKKEKGCSWIE 537



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 105/275 (38%), Gaps = 69/275 (25%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + VG+QLH + +K G   +   +   L+ MY +CG   + + +FDE    +  S NA+I 
Sbjct: 173 VSVGQQLHGYAVKAGC-RADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIA 231

Query: 81  GFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK--------------------- 115
           G  +     ++L+LF     +    N  SW  +++   +                     
Sbjct: 232 GLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEP 291

Query: 116 ------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
                       A++AAL +G+  H   L  G   D  + S+LV++Y KCG    A  + 
Sbjct: 292 NSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIF 351

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
           + M   +    +A+I GYA  G                               E   A+ 
Sbjct: 352 DTMVSRNVVSWNAMIGGYAMYG-------------------------------EAVNAVW 380

Query: 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
           +FH M +     D  T   +L+AC+  G  E G+ 
Sbjct: 381 MFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRH 415



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+  H   L+KG L+    +++ L+ MY +CG   DA ++FD M  RN  SWNAMI G+ 
Sbjct: 312 GRSAHCFALRKGFLHDVY-VSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYA 370

Query: 84  KLGHKEKSLQLFNVM---PQKNDF-SWNMLISGFAKADLA--ALEYGKQIHSHILVNGLD 137
             G    ++ +F+ M    QK D  ++  L++   +A L      Y K++H+     G+ 
Sbjct: 371 MYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEY---GVS 427

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 178
                 + +V L G+ G  + A  +++ M  EPD +   +L+
Sbjct: 428 PRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLL 469


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 164/605 (27%), Positives = 295/605 (48%), Gaps = 108/605 (17%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           +C  +H     KQ+H+  +   + + T  + N LL+  +       + LLF      N F
Sbjct: 23  ACTVNHL----KQIHVSLINHHLHHDTF-LVNLLLKRTLFFRQTKYSYLLFSHTQFPNIF 77

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHS 129
            +N++I GF+      ++L LF  + +     + F++ +++    +A  ++ + G  +HS
Sbjct: 78  LYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRA--SSRKLGIDLHS 135

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
            ++                   KCG FN            D   +++L+S Y+  G++ND
Sbjct: 136 LVV-------------------KCG-FNH-----------DVAAMTSLLSIYSGSGRLND 164

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           A ++FD   D S V W ++ SGY ++    EA+ LF KM   GV  D+  +  VLSAC  
Sbjct: 165 AHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVH 224

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNT 308
           +G L+ G+ +                                 K   E+++  ++ +  T
Sbjct: 225 VGDLDSGEWI--------------------------------VKYMEEMEMQKNSFVRTT 252

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
           ++ +Y+ CG++E A+ +F +M  K +++W++MI G + N  P E ++LF  M + +L+ D
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA------- 421
           +FS+   +S+CA++ +L+LGE   + +      ++  ++ +L+D Y KCG  A       
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372

Query: 422 --------------------------LALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
                                      A+F +    G+ P   TF  +L  C H GL+++
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQD 432

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G ++F+A+   Y +   +EHY CMVDL+ RAG L++A  LI  MP   +  +W ++L GC
Sbjct: 433 GLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 492

Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
               D  L   V + +I L+P NA  Y+QLS+I++  G W++++ +RD+M +K + K+PG
Sbjct: 493 RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPG 552

Query: 576 CSWAD 580
            SW +
Sbjct: 553 YSWIE 557



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 212/496 (42%), Gaps = 77/496 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    S  +G  LH   +K G  N  +     LL +Y   G   DA  LFDE+P R
Sbjct: 117 VLKACTRASSRKLGIDLHSLVVKCG-FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDR 175

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKADLAALEYGKQI 127
           +  +W A+  G+   G   +++ LF  M +   K D S+ ++    A   +  L+ G+ I
Sbjct: 176 SVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPD-SYFIVQVLSACVHVGDLDSGEWI 234

Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
             ++    +  +S + ++LVNLY KCG    A  V + M E D    S +I GYA     
Sbjct: 235 VKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYA----- 289

Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
                                     SN+   E + LF +M +  +  D  ++   LS+C
Sbjct: 290 --------------------------SNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSC 323

Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
           +SLG L+ G+       +   + ++ +A+AL+D Y+K G  +   ++F E+K  D +++N
Sbjct: 324 ASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMN 383

Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367
             I+                               GL++NG    +  +F    KL +  
Sbjct: 384 AAIS-------------------------------GLAKNGHVKLSFAVFGQTEKLGISP 412

Query: 368 DKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGY--DALAL 424
           D  +   ++  C +   ++ G + F  ++ +  L         +VD + + G   DA  L
Sbjct: 413 DGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRL 472

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLF 483
             +M    ++P  I + A+LS C    LVK+ Q     +K    ++P    +Y  + +++
Sbjct: 473 ICDMP---MRPNAIVWGALLSGCR---LVKDTQLAETVLKELIALEPWNAGNYVQLSNIY 526

Query: 484 ARAGCLNEAVNLIEQM 499
           +  G  +EA  + + M
Sbjct: 527 SVGGRWDEAAEVRDMM 542


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 169/606 (27%), Positives = 283/606 (46%), Gaps = 100/606 (16%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+SC+    + +GK +H  FLKK  +++ + + + L+++Y +CG   DA+ +F E P+++
Sbjct: 112 LKSCSGLQKLELGKMIH-GFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQD 170

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFN---VMPQKNDFSWNMLISGFAKADLAALEYGKQIH 128
              W ++I G+ + G  E +L  F+   V+ Q +     ++ +  A A L+    G+ +H
Sbjct: 171 VVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVH 230

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
             +   G D    L +S++NLYGK G   SA  +   M   D    S++++ YA+     
Sbjct: 231 GFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYAD----- 285

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                                     N  +T AL LF++M    +  +  T+ S L AC+
Sbjct: 286 --------------------------NGAETNALNLFNEMIDKRIELNRVTVISALRACA 319

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           S   LE GK +H  A   G   D+ V++AL+D Y K   P +A  LF+            
Sbjct: 320 SSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNR----------- 368

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                               MP K ++SW  +  G ++ G   ++L +FCNM     R D
Sbjct: 369 --------------------MPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPD 408

Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------- 417
             +L  +++A + +  ++    + A V+  G D+++ I  SL++ Y KC           
Sbjct: 409 AIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFK 468

Query: 418 ----------------------GYDALALFNEMRN-TGVKPTIITFTAILSACDHCGLVK 454
                                 G +AL LF +M N + VKP  +TF +ILSAC H GL++
Sbjct: 469 GMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIE 528

Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
           EG K F  M  +Y + P  EHY  MVDL  R G L++A+++I +MP +A   +W ++L  
Sbjct: 529 EGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGA 588

Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
           C  H +  +G   A  +  LDP +A  Y  LS+I+     W  ++ +R +++E    K+ 
Sbjct: 589 CRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIV 648

Query: 575 GCSWAD 580
           G S  +
Sbjct: 649 GQSMVE 654



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 137/554 (24%), Positives = 227/554 (40%), Gaps = 105/554 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R D L +LL++C +  SI    QLH   LK G+ + +  +  +L  +Y R  +   A  L
Sbjct: 3   RRDLLVKLLETCCSKISI---PQLHSQCLKVGLAHDSF-VVTKLNVLYARYASLCHAHKL 58

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAKADL 118
           F+E P +  + WNA++  +   G   ++L LF+ M      ++   ++ + I+  + + L
Sbjct: 59  FEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGL 118

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
             LE GK IH  +    +D D  +GS+L+ LY KCG  N A +V     + D    +++I
Sbjct: 119 QKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSII 178

Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
           +GY   G    A   F R      V                                D  
Sbjct: 179 TGYEQNGSPELALAFFSRMVVLEQVS------------------------------PDPV 208

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TL S  SAC+ L     G+ VHG   + G    + +A+++L+ Y K G    A  LF E+
Sbjct: 209 TLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREM 268

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
              D I  ++M+  Y                               + NG+   AL+LF 
Sbjct: 269 PYKDIISWSSMVACY-------------------------------ADNGAETNALNLFN 297

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC- 417
            M    + +++ ++ S + ACA+ S+LE G+ +       G + D  +ST+L+D Y KC 
Sbjct: 298 EMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCF 357

Query: 418 -------------------------GY-------DALALFNEMRNTGVKPTIITFTAILS 445
                                    GY        +L +F  M + G +P  I    IL+
Sbjct: 358 SPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILA 417

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           A    G+V++      A   +   D      + +++L+A+   ++ A  + + M    DV
Sbjct: 418 ASSELGIVQQAL-CLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMR-RKDV 475

Query: 506 GMWSSILRGCVAHG 519
             WSSI+     HG
Sbjct: 476 VTWSSIIAAYGFHG 489



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 175/404 (43%), Gaps = 73/404 (18%)

Query: 160 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
           +Q L +    D F ++ L   YA    +  A ++F+ T   +  +WN+++  Y    +  
Sbjct: 25  SQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWV 84

Query: 220 EALLLFHKMRRNGVLE---DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
           E L LFH+M  + + E   D  T++  L +CS L  LE GK +HG   K  + +D+ V S
Sbjct: 85  ETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGS 144

Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
           AL++ YSK G  +DA K+F+E    D +L  ++IT                         
Sbjct: 145 ALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIIT------------------------- 179

Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARV 395
                 G  QNGSP  AL  F  M  L+ +  D  +L S  SACA +S   LG  V   V
Sbjct: 180 ------GYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFV 233

Query: 396 TIIGLDSDQIISTSLVDFYCKCG---------------------------------YDAL 422
              G D+   ++ S+++ Y K G                                  +AL
Sbjct: 234 KRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNAL 293

Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
            LFNEM +  ++   +T  + L AC     ++EG K    +   Y  + +I   + ++D+
Sbjct: 294 NLFNEMIDKRIELNRVTVISALRACASSSNLEEG-KHIHKLAVNYGFELDITVSTALMDM 352

Query: 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
           + +      A++L  +MP + DV  W+ +  G   + + G+  K
Sbjct: 353 YMKCFSPKNAIDLFNRMP-KKDVVSWAVLFSG---YAEIGMAHK 392


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 179/635 (28%), Positives = 302/635 (47%), Gaps = 105/635 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C   + +  G +LH  ++K+  L   + + N L+ MY RCG+  +A  +FD +
Sbjct: 256 FASILGACTNPNDLEQGLKLHA-YIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNL 314

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
              N  SWNAMI G+ + G  E++ +LF  M QK    + F++  L++    AD A L  
Sbjct: 315 RSPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLA--ICADRADLNR 371

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           GK++HS I+    + D  + +                               ALIS YA 
Sbjct: 372 GKELHSQIVRTAWEADVTVAT-------------------------------ALISMYAK 400

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG + +AR+VF++  + ++V WN+ I+    +  + EA  +F +MRR+ V+ D  T  ++
Sbjct: 401 CGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITL 460

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L++C+S    E G+ +HG   + G++ + +VA+AL+  Y + G  +DA ++F  ++  D 
Sbjct: 461 LNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRD- 519

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                                         L SWN+MI    Q+G+   A DLF      
Sbjct: 520 ------------------------------LGSWNAMIAAYVQHGANGSAFDLFIKYKSE 549

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
             + DK++  +V+ A AN+  L+ G ++   V   GL+ D  I T+L+  Y KC      
Sbjct: 550 GGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDA 609

Query: 418 ---------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      G DAL LF +MR  GV P   T+T++L+AC   
Sbjct: 610 YSVFKNVQEKDVVCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARL 669

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
           G ++ G+K+   +K +  ++ +  HY+CMV    RA  L EA   IE++  E+D  MW S
Sbjct: 670 GAIEHGKKFHTQLK-EAAMETDTRHYACMVAALGRASLLKEAEEFIEEISSESDALMWES 728

Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYI-QLSSIFATSGEWEKSSLIRDIMREKH 569
           +L  C  H + GL     E ++++  +++ A   QL +I+A +G WE  S+I+  MRE  
Sbjct: 729 LLVACRIHHNVGLAETAVEHLLDVKAQSSPAVCEQLMNIYAAAGRWEDVSVIKATMREAG 788

Query: 570 VGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIKQ 604
           +     C+      F+ +  +    Q+   D+I++
Sbjct: 789 LLAPKSCTIEVNSEFHTFMTNHFSPQIGVEDKIEE 823



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 137/562 (24%), Positives = 254/562 (45%), Gaps = 119/562 (21%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           +++ AR LQ C    S+  GK++H H ++       + + N L+ MY +CG+  DA  +F
Sbjct: 51  LNFYARRLQECVQAKSLAEGKKVHDH-MRSAQFEPDIYLNNMLISMYSKCGSIEDANNVF 109

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAKADLA-ALE 122
             M  ++  SWNAMI G+   G  ++++ LF  M ++    + N  IS  +       LE
Sbjct: 110 QSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLE 169

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
           +G+QIHSHI   G + D  + ++L+N+Y KCG    A +V N M+E +    +A+IS   
Sbjct: 170 FGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMIS--- 226

Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
                                       GY+ + +  EA +LF K+ R+G   +  + AS
Sbjct: 227 ----------------------------GYVQHGDSKEAFVLFQKLIRSGTQPNKVSFAS 258

Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
           +L AC++   LE G ++H +  + G+  +V+V +AL+  Y++ G  ++A ++F  L+  +
Sbjct: 259 ILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPN 318

Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
            +  N MI  Y   G +E+A  +FR M  K                              
Sbjct: 319 RVSWNAMIAGYGE-GFMEEAFRLFRDMQQKG----------------------------- 348

Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
              + D+F+ AS+++ CA+ + L  G+++ +++     ++D  ++T+L+  Y KCG    
Sbjct: 349 --FQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEE 406

Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
                                         +A  +F +MR   V P  +TF  +L++C  
Sbjct: 407 ARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTS 466

Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHY---------SCMVDLFARAGCLNEAVNLIEQMP 500
               + G+          +I  +I+ +         + ++ ++ R G L +A  +  ++ 
Sbjct: 467 PEDFERGR----------YIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIR 516

Query: 501 FEADVGMWSSILRGCVAHGDKG 522
              D+G W++++   V HG  G
Sbjct: 517 -RRDLGSWNAMIAAYVQHGANG 537



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 184/401 (45%), Gaps = 67/401 (16%)

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
           EPD +  + LIS Y+ CG + DA  VF    D   V WN+MISGY  +    EA+ LF++
Sbjct: 83  EPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQ 142

Query: 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
           M+R G+  + ++  S+LSAC +   LE G+Q+H H  K G   DV V++AL++ Y K G 
Sbjct: 143 MQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGS 202

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
              A K+F+E++  + +    MI+                               G  Q+
Sbjct: 203 LELARKVFNEMRERNVVSWTAMIS-------------------------------GYVQH 231

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
           G   EA  LF  + +   + +K S AS++ AC N + LE G ++ A +   GL+ + ++ 
Sbjct: 232 GDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVG 291

Query: 408 TSLVDFYCKCG--------------------------------YDALALFNEMRNTGVKP 435
            +L+  Y +CG                                 +A  LF +M+  G +P
Sbjct: 292 NALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGEGFMEEAFRLFRDMQQKGFQP 351

Query: 436 TIITFTAILSAC-DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
              T+ ++L+ C D   L +  +     ++  +  D  +   + ++ ++A+ G L EA  
Sbjct: 352 DRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVA--TALISMYAKCGSLEEARK 409

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
           +  QMP E +   W++ +  C  HG +    +V ++M   D
Sbjct: 410 VFNQMP-EKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDD 449



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 175/427 (40%), Gaps = 110/427 (25%)

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
           + GV  + +  A  L  C     L  GK+VH H        D+ + + L+  YSK G   
Sbjct: 44  KRGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIE 103

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
           DA  +F  ++  D +  N MI+ Y+  GR +                             
Sbjct: 104 DANNVFQSMEDKDVVSWNAMISGYALHGRGQ----------------------------- 134

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
             EA+DLF  M +  L+ ++ S  S++SAC     LE GEQ+ + +T  G +SD  +ST+
Sbjct: 135 --EAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTA 192

Query: 410 LVDFYCKCGYDALA--LFNEMRN-------------------------------TGVKPT 436
           L++ YCKCG   LA  +FNEMR                                +G +P 
Sbjct: 193 LINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPN 252

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL------- 489
            ++F +IL AC +   +++G K    +K Q  ++ E+   + ++ ++AR G L       
Sbjct: 253 KVSFASILGACTNPNDLEQGLKLHAYIK-QAGLEQEVLVGNALISMYARCGSLANARQVF 311

Query: 490 -----------------------NEAVNL---IEQMPFEADVGMWSSILRGCVAHGDKGL 523
                                   EA  L   ++Q  F+ D   ++S+L  C    D   
Sbjct: 312 DNLRSPNRVSWNAMIAGYGEGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNR 371

Query: 524 GRKVAERMI----ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579
           G+++  +++    E D   A A I   S++A  G  E++  + + M EK+       SW 
Sbjct: 372 GKELHSQIVRTAWEADVTVATALI---SMYAKCGSLEEARKVFNQMPEKN-----AVSWN 423

Query: 580 DGIAFNC 586
             IA  C
Sbjct: 424 AFIACCC 430


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 166/590 (28%), Positives = 279/590 (47%), Gaps = 112/590 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   L++C     +  G+ +H      G   S + +A  L+ MY +CG+  +A  +F  +
Sbjct: 116 LVSALKACAVAGDLEEGRGIHASARSLG-YESEIIVATALVSMYGKCGHLEEAKAVFATL 174

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAAL 121
             RN  SWNAM+  + + GH E++++L+ +M      P    F    ++ G+        
Sbjct: 175 VERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFV--SVLDGWKGEG---- 228

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
           E+G +IH  +L +G   ++ L ++LV++YG                              
Sbjct: 229 EHGTRIHDQVLESGFGSNTTLANALVSMYG------------------------------ 258

Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM---RRNGVLEDAS 238
            + G+++DAR VFD   + + V WN+M++ Y  N    +A+ LF KM   RR  V  ++ 
Sbjct: 259 -SGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSV 317

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           T  ++L AC++ GFLE G+++H     +G++  + V  AL                    
Sbjct: 318 TFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGAL-------------------- 357

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                      I +YS CG +  AK +F ++P+K+L+SWN +I   + +G   EAL +  
Sbjct: 358 -----------INMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQ 406

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M    L+ DKF+  SV+ AC+   +L  G+ + A +   GL+ D+ I T+L++ Y KCG
Sbjct: 407 KMELEGLKPDKFTFISVLHACSASEALAEGKAIHALIAASGLERDEAIGTALINLYGKCG 466

Query: 419 ----------------------------------YDALALFNEMRNTGVKPTIITFTAIL 444
                                              D + + + M   G+ P  +TF ++L
Sbjct: 467 SLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTFLSVL 526

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
            AC H G +++G   F +    Y I    +HY C+VD+  R G L EA  ++ +MPF+A+
Sbjct: 527 FACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRMPFQAN 586

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
              W ++L  C  H D   GR+ A+ +IELDP+NA  Y  LS++F+ +G 
Sbjct: 587 DVAWMTLLGACRIHRDFEQGRRAADYVIELDPQNAAPYALLSTMFSVAGR 636



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 131/549 (23%), Positives = 227/549 (41%), Gaps = 104/549 (18%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+ C +   +   KQ      + G       + N L+Q Y +CG+  DA  +FD + 
Sbjct: 16  ASILRDCASARDLTAAKQAQWEIARDG-FGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQ 74

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-LISGFAKADLAA-LEYGKQ 126
           RRN FSW  M+  +   GH  ++L LF  +  +     N+ L+S      +A  LE G+ 
Sbjct: 75  RRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEGRG 134

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH+     G + + ++ ++LV++YGK                               CG 
Sbjct: 135 IHASARSLGYESEIIVATALVSMYGK-------------------------------CGH 163

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
           + +A+ VF    + + V WN+M++ Y  N    EA+ L+  M   G+  DA+T  SVL  
Sbjct: 164 LEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDG 223

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
               G  EHG ++H    + G   +  +A+AL+  Y   G   DA  +F  +     +  
Sbjct: 224 WKGEG--EHGTRIHDQVLESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSW 281

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-- 364
           N M+T Y                               +QNG   +A+DLF  M+++   
Sbjct: 282 NAMLTAY-------------------------------AQNGRYGKAVDLFWKMDEMRRA 310

Query: 365 -LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
            +  +  +  +++ ACA    LE G ++ A V  +GL S   +  +L++ Y +C      
Sbjct: 311 LVEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLVLA 370

Query: 418 ---------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHC 450
                                      G +AL +  +M   G+KP   TF ++L AC   
Sbjct: 371 KSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSAS 430

Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
             + EG K   A+     ++ +    + +++L+ + G L +A N+   M    ++  W+S
Sbjct: 431 EALAEG-KAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWNS 489

Query: 511 ILRGCVAHG 519
           +L      G
Sbjct: 490 MLAAACTKG 498



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 38/246 (15%)

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
           S+ AS+L  C+S   L   KQ      + G   D  + + L+  Y K             
Sbjct: 13  SSHASILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGK------------- 59

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
                             CG + DA+ +F  +  +++ SW  M+   + NG   EAL LF
Sbjct: 60  ------------------CGSVRDAREVFDRIQRRNIFSWTIMLGAYADNGHGREALGLF 101

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             +    + +D  +L S + ACA    LE G  + A    +G +S+ I++T+LV  Y KC
Sbjct: 102 REIQSRGMAIDNVTLVSALKACAVAGDLEEGRGIHASARSLGYESEIIVATALVSMYGKC 161

Query: 418 GY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
           G+  +A A+F  +    V+   +++ A+L+A    G  +E  + +  M ++  I P+   
Sbjct: 162 GHLEEAKAVFATL----VERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFE-GIKPDATT 216

Query: 476 YSCMVD 481
           +  ++D
Sbjct: 217 FVSVLD 222


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/443 (32%), Positives = 237/443 (53%), Gaps = 35/443 (7%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D F ++A +  ++  G M  ARR+FD +     V WN++I GY+ +    EAL LF ++ 
Sbjct: 155 DVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLV 214

Query: 230 RNG--VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287
            +G  V  D  T+   +S C+ +G LE GK++H      GV   V + +A++D Y K G 
Sbjct: 215 EDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGS 274

Query: 288 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
              A  +F  +     +   TMI  ++  G +EDA+ +F  MP + +  WN+++ G  QN
Sbjct: 275 LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
               EA+ LF  M +  +  ++ ++ +++SAC+ + +LE+G  V   +    L     + 
Sbjct: 335 KQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALG 394

Query: 408 TSLVDFYCKCGY---------------------------------DALALFNEMRNTGVK 434
           TSLVD Y KCG                                  +A+  F  M + G++
Sbjct: 395 TSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQ 454

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P  ITF  +LSAC H GLVKEG+++F  M  +YH++ +++HYSCM+DL  RAG L+EA  
Sbjct: 455 PDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQ 514

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
           L+  MP + D  +W ++   C  HG+  LG K A +++ELDP ++  Y+ L++++A +  
Sbjct: 515 LVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANM 574

Query: 555 WEKSSLIRDIMREKHVGKLPGCS 577
            +K+  +R +MR   V K+PGCS
Sbjct: 575 RKKADKVRVMMRHLGVEKVPGCS 597



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 239/502 (47%), Gaps = 52/502 (10%)

Query: 3   TRIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
            R D+L    LL++C        G  +  H  K G  ++ + + N  +  +   G+   A
Sbjct: 117 ARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLG-FSADVFVVNAGVHFWSVSGSMVLA 175

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFA 114
             LFDE P R+  SWN +I G+++ G   ++L+LF          + ++ +    +SG A
Sbjct: 176 RRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCA 235

Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
           +  +  LE GK++H  +   G+     L ++++++Y KCG    A  V   +        
Sbjct: 236 Q--MGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSW 293

Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
           + +I G+A  G M DAR +FD   +     WN++++GY+ N +  EA+ LFH+M+ + V 
Sbjct: 294 TTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVD 353

Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
            +  T+ ++LSACS LG LE G  VH +  +  +   V + ++L+D Y+K          
Sbjct: 354 PNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAK---------- 403

Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
                                CG I+ A  IF+ +P+K+ ++W +MI GL+ +G   EA+
Sbjct: 404 ---------------------CGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAI 442

Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDF 413
           + F  M  L L+ D+ +   V+SAC +   ++ G Q F+ +     L+      + ++D 
Sbjct: 443 EYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDL 502

Query: 414 YCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
             + G+  +A  L N M    + P  + + A+  AC   G +  G+K   AMK    +DP
Sbjct: 503 LGRAGHLDEAEQLVNTM---PMDPDAVVWGALFFACRMHGNITLGEK--AAMKL-VELDP 556

Query: 472 EIEH-YSCMVDLFARAGCLNEA 492
                Y  + +++A A    +A
Sbjct: 557 SDSGIYVLLANMYAEANMRKKA 578


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/542 (29%), Positives = 260/542 (47%), Gaps = 105/542 (19%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNG 135
           N++I+ + K    ++++++F  +P     SWN+LI+GF                      
Sbjct: 12  NSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGF---------------------- 49

Query: 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDAR 191
                          G+ G    A +VL++M+E    P++   S L++       ++ AR
Sbjct: 50  ---------------GQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSAR 94

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
            +FD+ +  S   WN+++SGY    +  + + LF +M+   V  D +TLA +LS+CS LG
Sbjct: 95  AMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLG 154

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
            L+ G+QVH  + +  + +D+ VAS L+D YSK                           
Sbjct: 155 ILDFGRQVHSASVRFLLHNDMFVASGLVDMYSK--------------------------- 187

Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
               CG+I  A+ IF  M  + ++ WNS+I GL+ +    EA D F  M +  +   + S
Sbjct: 188 ----CGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESS 243

Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD--- 420
            AS+I++C+ +SS+  G Q+ A+V   G D +  + ++L+D Y KCG        +D   
Sbjct: 244 YASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMM 303

Query: 421 ----------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
                                 A+ LF  M  T  KP  +TF A+L+ C H GLV +   
Sbjct: 304 MKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMA 363

Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
           +F++M+  Y I P  EHY+C++D   RAG   E   LI +MP + D  +W  +L  CV H
Sbjct: 364 FFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVH 423

Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
            +  LG+  AE +  +DP+N   Y+ LS+I+A+ G    +S +R +M  + V K  G SW
Sbjct: 424 HNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSW 483

Query: 579 AD 580
            D
Sbjct: 484 ID 485



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 153/334 (45%), Gaps = 46/334 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L SC+    +  G+Q+H   ++  +L++ + +A+ L+ MY +CG    A  +F++M
Sbjct: 143 LAVILSSCSKLGILDFGRQVHSASVRF-LLHNDMFVASGLVDMYSKCGQIGIARSIFNKM 201

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
             R+   WN++I G       +++   F  M +      + S+  +I+  ++  L+++ +
Sbjct: 202 TERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSR--LSSIPH 259

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G+QIH+ ++ +G D +  +GS+L+++Y KCG+                            
Sbjct: 260 GRQIHAQVMKDGYDQNVYVGSALIDMYAKCGN---------------------------- 291

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
              M+DAR  FD     + V WN MI GY  N    +A+ LF  M       DA T  +V
Sbjct: 292 ---MDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAV 348

Query: 244 LSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--- 299
           L+ CS  G ++      +      G+I      + L+D   + G   +   L  ++    
Sbjct: 349 LTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKD 408

Query: 300 ---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330
              +++ +L   ++   +  G+   A+H+FR  P
Sbjct: 409 DPIIWEVLLAACVVHHNAELGKCA-AEHLFRIDP 441



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M T   Y A ++ SC+   SI  G+Q+H   +K G  +  + + + L+ MY +CGN  DA
Sbjct: 238 MPTESSY-ASMINSCSRLSSIPHGRQIHAQVMKDG-YDQNVYVGSALIDMYAKCGNMDDA 295

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND 103
            L FD M  +N  +WN MI G+ + G  +K+++LF  M    QK D
Sbjct: 296 RLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPD 341


>gi|302769798|ref|XP_002968318.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
 gi|300163962|gb|EFJ30572.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
          Length = 666

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/586 (27%), Positives = 280/586 (47%), Gaps = 81/586 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    ++  G ++     ++G+L+S + + N L+ MY +CG+   A ++F+ M  R
Sbjct: 114 VVSACCDPSALEAGDKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIR 173

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAD-LAA--- 120
           +  SWNA+I    +   K+ ++Q F  M      P++      +L  GF  A  LAA   
Sbjct: 174 DVVSWNAIISALARHDRKDIAMQRFREMQLEGLSPKEE----ALLPDGFTLASALAACTG 229

Query: 121 ---LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
              LE G++IH+ ++  G + + V+G++LV++Y  CG                       
Sbjct: 230 PEMLEEGREIHALVIERGCESELVVGNALVSMYANCG----------------------- 266

Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
                    + DA   F +    + V WN+MI+ Y+ +N D EA  +FH+M+  GV  ++
Sbjct: 267 --------TLQDALECFQKMAQRNVVSWNAMIAAYVHHNCDKEAFRIFHQMQLEGVQPNS 318

Query: 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297
            T  + LSACS+    E G Q+H    + G+  D  V +A++  ++K     DA   F  
Sbjct: 319 VTFVTFLSACSTPAAFEDGLQLHSIVRESGLEADASVGNAVVHMFAKCWSLDDALAAFQR 378

Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
           +   +    N ++  Y   GR+ +A+ +F  M  + +I+WN ++    +     EA+ LF
Sbjct: 379 IPQKNLGSWNGLLGAYIHVGRLAEARKLFEVMEERDVITWNMILGAYVEREMAKEAVRLF 438

Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
             M     + +  +  +++ ACA  + L  G ++   +   G DS+  +  +LVD + KC
Sbjct: 439 RRMIAEGTKSNSITWTTMLGACAGEALLAEGRRIHELIGERGADSELFVGNALVDMFGKC 498

Query: 418 ---------------------------------GYDALALFNEMRNTGVKPTIITFTAIL 444
                                              +AL  F +M+  G+KPT +TF  + 
Sbjct: 499 ASLGGARQAFERIRGKDASSWNVLVAALAQNGDAEEALKQFLQMQREGIKPTDVTFIVVF 558

Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
            AC H G +++ +  F +++  Y I P   HYS M DL  RAG L+EA  +I+++PF  D
Sbjct: 559 WACSHAGRLEQAKTIFASLRHDYGIAPLPSHYSGMTDLLGRAGFLDEAEEVIKRIPFSQD 618

Query: 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550
              W ++L  C  HGD   GRKVA +++  +P ++ A + LS+IFA
Sbjct: 619 ELPWMTLLSACKVHGDVERGRKVAGQVLRWNPGDSAARVALSNIFA 664



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 140/538 (26%), Positives = 244/538 (45%), Gaps = 96/538 (17%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+SC    S+  GK +HL  ++ G+L + + + N L+ MY +CG+   A  +FD M  R+
Sbjct: 13  LKSCVRIQSLAAGKFIHLLVIESGLL-TQISVGNALVNMYGKCGSLALAREVFDGMDHRD 71

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISGFAKADLAALEYGKQ 126
             SWNA+I  + + GH +++++LF  M      + +  ++  ++S  A  D +ALE G +
Sbjct: 72  VISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVS--ACCDPSALEAGDK 129

Query: 127 IHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           I + +   G LD D VLG++LVN+Y KCG   SA  V   MK  D               
Sbjct: 130 IFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRD--------------- 174

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-------VLEDAS 238
                            V WN++IS    ++    A+  F +M+  G       +L D  
Sbjct: 175 ----------------VVSWNAIISALARHDRKDIAMQRFREMQLEGLSPKEEALLPDGF 218

Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
           TLAS L+AC+    LE G+++H    + G   +++V +AL+  Y+  G   DA + F + 
Sbjct: 219 TLASALAACTGPEMLEEGREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQK- 277

Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
                                         M  ++++SWN+MI     +    EA  +F 
Sbjct: 278 ------------------------------MAQRNVVSWNAMIAAYVHHNCDKEAFRIFH 307

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
            M    ++ +  +  + +SAC+  ++ E G Q+ + V   GL++D  +  ++V  + KC 
Sbjct: 308 QMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIVRESGLEADASVGNAVVHMFAKCW 367

Query: 419 Y--DALALFNEM--RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
              DALA F  +  +N G      ++  +L A  H G + E +K F+ M+     + ++ 
Sbjct: 368 SLDDALAAFQRIPQKNLG------SWNGLLGAYIHVGRLAEARKLFEVME-----ERDVI 416

Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVG---MWSSILRGCVAHGDKGLGRKVAE 529
            ++ ++  +       EAV L  +M  E        W+++L  C        GR++ E
Sbjct: 417 TWNMILGAYVEREMAKEAVRLFRRMIAEGTKSNSITWTTMLGACAGEALLAEGRRIHE 474



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 210/459 (45%), Gaps = 46/459 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L +C     +  G+++H   +++G   S L + N L+ MY  CG   DAL  F +M
Sbjct: 220 LASALAACTGPEMLEEGREIHALVIERGC-ESELVVGNALVSMYANCGTLQDALECFQKM 278

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEY 123
            +RN  SWNAMI  ++     +++ ++F+ M     Q N  ++   +S  A +  AA E 
Sbjct: 279 AQRNVVSWNAMIAAYVHHNCDKEAFRIFHQMQLEGVQPNSVTFVTFLS--ACSTPAAFED 336

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G Q+HS +  +GL+ D+ +G+++V+++ KC   + A      + + +    + L+  Y +
Sbjct: 337 GLQLHSIVRESGLEADASVGNAVVHMFAKCWSLDDALAAFQRIPQKNLGSWNGLLGAYIH 396

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
            G++ +AR++F+   +   + WN ++  Y+      EA+ LF +M   G   ++ T  ++
Sbjct: 397 VGRLAEARKLFEVMEERDVITWNMILGAYVEREMAKEAVRLFRRMIAEGTKSNSITWTTM 456

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           L AC+    L  G+++H    + G   ++ V +AL+D + K                   
Sbjct: 457 LGACAGEALLAEGRRIHELIGERGADSELFVGNALVDMFGK------------------- 497

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
                       C  +  A+  F  +  K   SWN ++  L+QNG   EAL  F  M + 
Sbjct: 498 ------------CASLGGARQAFERIRGKDASSWNVLVAALAQNGDAEEALKQFLQMQRE 545

Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVT----IIGLDSDQIISTSLVDFYCKCGY 419
            ++    +   V  AC++   LE  + +FA +     I  L S     + + D   + G+
Sbjct: 546 GIKPTDVTFIVVFWACSHAGRLEQAKTIFASLRHDYGIAPLPSHY---SGMTDLLGRAGF 602

Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
              A    ++        + +  +LSAC   G V+ G+K
Sbjct: 603 LDEAE-EVIKRIPFSQDELPWMTLLSACKVHGDVERGRK 640



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 176/418 (42%), Gaps = 82/418 (19%)

Query: 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
           G+L D  +  + L +C  +  L  GK +H    + G++  + V +AL++ Y K G  + A
Sbjct: 1   GLLPDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALA 60

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
            ++F  +   D I  N +IT Y+  G  ++A  +F+ M                Q    I
Sbjct: 61  REVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAM----------------QEDGRI 104

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSL 410
           E               D  +  +V+SAC + S+LE G+++FA V   G LDSD ++  +L
Sbjct: 105 EP--------------DSVTFVAVVSACCDPSALEAGDKIFALVEERGLLDSDVVLGNAL 150

Query: 411 VDFYCKCG-----------------------------YD----ALALFNEMRNTGVKPTI 437
           V+ Y KCG                             +D    A+  F EM+  G+ P  
Sbjct: 151 VNMYSKCGSLKSATMVFERMKIRDVVSWNAIISALARHDRKDIAMQRFREMQLEGLSPKE 210

Query: 438 -------ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
                   T  + L+AC    +++EG++   A+  +   + E+   + +V ++A  G L 
Sbjct: 211 EALLPDGFTLASALAACTGPEMLEEGRE-IHALVIERGCESELVVGNALVSMYANCGTLQ 269

Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHG-DKGLGRKVAERMIELDPENACAYIQLSSIF 549
           +A+   ++M  + +V  W++++   V H  DK   R   +  +E    N+  ++   S  
Sbjct: 270 DALECFQKMA-QRNVVSWNAMIAAYVHHNCDKEAFRIFHQMQLEGVQPNSVTFVTFLSAC 328

Query: 550 ATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAF---NCWFLDTMFLQLANFDEIKQ 604
           +T   +E    +  I+RE   G     S  + +      CW LD     LA F  I Q
Sbjct: 329 STPAAFEDGLQLHSIVRES--GLEADASVGNAVVHMFAKCWSLDD---ALAAFQRIPQ 381


>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
 gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
          Length = 806

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 172/585 (29%), Positives = 278/585 (47%), Gaps = 107/585 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G Q+H   ++  I  + + + N L+ MY+RCG   +AL +F +MP RN  SW +MI    
Sbjct: 268 GIQIH-DKIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVA 326

Query: 84  KLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK-ADLAALEYGKQIHSHILVNGLDF 138
           + GH   +++LF+ M  +    N+ ++  ++S  A     A L+ G++IHS I  +G+D 
Sbjct: 327 QSGHYSFAVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDA 386

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D ++ +SL+N+Y                               A  G + +AR VFD   
Sbjct: 387 DPIVQNSLINMY-------------------------------ARSGLLAEAREVFDSIL 415

Query: 199 DTSS--VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
           + S   V + +MI+ Y  N    +AL +F +M   GV  +  T A+VL+AC ++G L  G
Sbjct: 416 ENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASG 475

Query: 257 KQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
             +H    + G+   D    ++L+D Y+K G    A ++F                    
Sbjct: 476 AWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFE------------------- 516

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                       TM  K L++W ++I    Q+G+   ALDL+  M +  +  D  +L+++
Sbjct: 517 ------------TMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTL 564

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD------- 420
           + ACAN+  L +GE++  +     L+ D     +L   Y KCG        Y        
Sbjct: 565 LVACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDV 624

Query: 421 ------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
                             AL L+ EM + GV+P  +TF  +L +C   GLV EG+++F +
Sbjct: 625 ATWTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHS 684

Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
           +   Y   P  EH+ CMVD+  RAG L +A  L++ MPF  D   W S+L  C  H D  
Sbjct: 685 ITSDYGSQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAE 744

Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           +G + AE ++ELDPE+   ++ LS I+A +G   ++S I +I RE
Sbjct: 745 IGTRAAECLLELDPESTSQFVALSQIYAAAG---RNSDIDEIKRE 786



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 158/641 (24%), Positives = 268/641 (41%), Gaps = 153/641 (23%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C    ++  G+++H H + + +  + L +   + QMY RC     A+ LFD MP
Sbjct: 54  ANLLRQCGNQRALDHGRRVHAHIVSRRLARNAL-LGELVFQMYARCRCFDTAIALFDAMP 112

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALE 122
            R  F WN +++ F+       +L+L+      N  P    F W ++  G  K DLA   
Sbjct: 113 DRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIK-DLA--- 168

Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
            G+ IH  +   G   +S + S+LV +Y +CG  + A    +  +E      +A++S  A
Sbjct: 169 QGRSIHYRV-ATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALA 227

Query: 183 NCGKMNDARRVF---------DRTT----------------------------DTSSVMW 205
             G    A  +F         DR+                              T  ++ 
Sbjct: 228 GAGHHRRAIELFFQMEQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVL 287

Query: 206 NSMISGYISNNEDTEALLLFHKM-RRN------------------------------GVL 234
           N++IS Y+   +  EAL +F  M  RN                              G+ 
Sbjct: 288 NALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGIN 347

Query: 235 EDASTLASVLSACSSLG---FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
            +  T ASV+SA + LG    L+ G+++H      G+  D IV ++L++ Y++ G+ ++A
Sbjct: 348 PNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEA 407

Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
                  +V+D+IL N+                       K+++S+ +MI   + NG P 
Sbjct: 408 ------REVFDSILENS-----------------------KTVVSFTTMIAAYAHNGHPR 438

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSL 410
           +AL++F  M    +  ++ + A+V++AC  I  L  G  +  R+   GLD SD     SL
Sbjct: 439 QALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSL 498

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           VD Y KCG                                   AL L++ M  +G+ P I
Sbjct: 499 VDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDI 558

Query: 438 ITFTAILSACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            T + +L AC + G +  G+K    A++ +   D   +  + +  ++A+ G L +A  L 
Sbjct: 559 ATLSTLLVACANLGDLAMGEKIHRQALRSKLEQDAHFQ--NALAAMYAKCGSLEKATRLY 616

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
            +    +DV  W+S+L    AH  +GL     E   E++ E
Sbjct: 617 RRCR-GSDVATWTSML---AAHSQQGLASVALELYAEMESE 653



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 98/513 (19%), Positives = 202/513 (39%), Gaps = 91/513 (17%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           AL++G+++H+HI+   L  +++LG  +  +Y +C  F++A  + + M +   FC      
Sbjct: 65  ALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMPDRRPFC------ 118

Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
                                    WN ++  +++ +   + L L+ +M        A  
Sbjct: 119 -------------------------WNVLMKEFLAADRPRDTLELYRRMSVENTQPSACG 153

Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
               + AC  +  L  G+ +H +    G   +  + SAL+  Y++ G    A   F + +
Sbjct: 154 FMWAIVACGRIKDLAQGRSIH-YRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNR 212

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-------------------------- 333
              T   N +++  +  G    A  +F  M                              
Sbjct: 213 ELGTAPWNAIMSALAGAGHHRRAIELFFQMEQHQCSDRSCAIALGACAAAGHLRGGIQIH 272

Query: 334 -----------LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
                      ++  N++I    + G   EAL +F +M   ++     S  S+I+A A  
Sbjct: 273 DKIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNV----VSWTSMIAAVAQS 328

Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDAL-----ALFNEMRNTGVKPTI 437
                  ++F  +   G++ ++    S+V      G DA+      + +++  +G+    
Sbjct: 329 GHYSFAVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADP 388

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
           I   ++++     GL+ E ++ FD++         +  ++ M+  +A  G   +A+ +  
Sbjct: 389 IVQNSLINMYARSGLLAEAREVFDSI---LENSKTVVSFTTMIAAYAHNGHPRQALEIFR 445

Query: 498 QMPFEADVG---MWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATS 552
           +M           ++++L  CVA GD   G  + ERMIE  LD  +  AY  L  ++A  
Sbjct: 446 EMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKC 505

Query: 553 GEWEKSSLIRDIMREKHVGKLPGCSWADGIAFN 585
           G+   ++ + + M+ K +      +W   IA N
Sbjct: 506 GDLGFAARVFETMKTKDL-----VAWTTIIAAN 533



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 132/321 (41%), Gaps = 40/321 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA-NRLLQMYMRCGNPTDALLLFDE 66
            A +L +C     +  G  +H   ++ G L+S+ P A N L+ MY +CG+   A  +F+ 
Sbjct: 459 FATVLAACVAIGDLASGAWIHERMIESG-LDSSDPFAYNSLVDMYAKCGDLGFAARVFET 517

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYG 124
           M  ++  +W  +I   ++ G+   +L L++ M Q         +S    A A+L  L  G
Sbjct: 518 MKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMG 577

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           ++IH   L + L+ D+   ++L  +Y KCG    A                         
Sbjct: 578 EKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKAT------------------------ 613

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
                  R++ R   +    W SM++ +      + AL L+ +M   GV  +  T   VL
Sbjct: 614 -------RLYRRCRGSDVATWTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVL 666

Query: 245 SACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-D 302
            +CS  G +  G++  H      G          ++D   + G   DA +L   +  Y D
Sbjct: 667 ISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPD 726

Query: 303 TILLNTMITVYSSCGRIEDAK 323
            I   +++   SSC    DA+
Sbjct: 727 EIAWQSLL---SSCKLHTDAE 744


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 166/544 (30%), Positives = 257/544 (47%), Gaps = 101/544 (18%)

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY---GKQIHSHI 131
           WN  +    K     ++L L+  M +  D   N     FA    AAL     G Q H  I
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRP-NAFTFPFALKSCAALSLPILGSQFHGQI 75

Query: 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
              G  F+  + + L+++Y                      C  +L+         ++AR
Sbjct: 76  TKVGCVFEPFVQTGLISMY----------------------CKGSLV---------DNAR 104

Query: 192 RVFDRTTDTS--SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           +VF+    +   +V +N+++SGY+SN++ +EA+LLF +M   GV  ++ TL  ++ AC S
Sbjct: 105 KVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVS 164

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
              LE G  +H    K G   DV V                               +N  
Sbjct: 165 PINLELGSSLHCSTLKYGFDSDVSV-------------------------------VNCF 193

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           IT+Y  CG +  A+ +F  MP K LISWN+M+ G +QNG     L+L+ NM+   +  D 
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 253

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD- 420
            +L  V+S+CAN+ +  +G +V  ++   G  S+  ++ +L++ Y +CG        +D 
Sbjct: 254 VTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDG 313

Query: 421 ------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                   A+ LF EM  +G++P    F  +LSAC H GL  +G
Sbjct: 314 MPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQG 373

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            ++F  MK  Y ++P  EHYSCMVDL  RAG L EA  LIE MP + D  +W ++L  C 
Sbjct: 374 LEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACK 433

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H +  L     ER+IEL+PEN   Y+ LS+I++ +   +    IR +M+EK + K PGC
Sbjct: 434 IHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGC 493

Query: 577 SWAD 580
           S+ +
Sbjct: 494 SYVE 497



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 112/248 (45%), Gaps = 34/248 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C +  ++ +G  LH   LK G  +S + + N  + MYM+CG+   A  LFDEMP +
Sbjct: 158 LIPACVSPINLELGSSLHCSTLKYG-FDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVK 216

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIH 128
              SWNAM+ G+ + G     L+L+  M         + + G     A+L A   G ++ 
Sbjct: 217 GLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVE 276

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
             I  +G   +  L ++L+N+Y +CG+   A  V + M E                    
Sbjct: 277 FKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPE-------------------- 316

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
                  RT     V W ++I GY  +     A+ LF +M R+G+  D +    VLSACS
Sbjct: 317 -------RTL----VSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACS 365

Query: 249 SLGFLEHG 256
             G  + G
Sbjct: 366 HAGLTDQG 373



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 156/388 (40%), Gaps = 68/388 (17%)

Query: 196 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255
           ++ +  S  WN+ +       +  +AL L+ +M R+G   +A T    L +C++L     
Sbjct: 8   KSMNALSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPIL 67

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           G Q HG   KVG + +  V + L+  Y K  +  +A K+F E                  
Sbjct: 68  GSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEE------------------ 109

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
                           K  + +N+++ G   N    EA+ LF  MN+  + ++  +L  +
Sbjct: 110 -----------NFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGL 158

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------- 418
           I AC +  +LELG  +       G DSD  +    +  Y KCG                 
Sbjct: 159 IPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGL 218

Query: 419 ----------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK-WFD 461
                            + L L+  M   GV P  +T   +LS+C + G    G +  F 
Sbjct: 219 ISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFK 278

Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
                +  +P +   + +++++AR G L +A  + + MP E  +  W++I+ G   HG  
Sbjct: 279 IQASGFTSNPFLN--NALINMYARCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGHG 335

Query: 522 GLGRKVAERMIE--LDPENACAYIQLSS 547
            +  ++ + MI   ++P+       LS+
Sbjct: 336 EIAVQLFKEMIRSGIEPDGTAFVCVLSA 363



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 13/237 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    +  VG ++       G  ++   + N L+ MY RCGN T A  +FD M
Sbjct: 256 LVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPF-LNNALINMYARCGNLTKAQAVFDGM 314

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--AL 121
           P R   SW A+I G+   GH E ++QLF  M     + +  ++  ++S  + A L    L
Sbjct: 315 PERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 374

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
           EY K +  +     L+      S +V+L G+ G    A  ++  M  +PD     AL+  
Sbjct: 375 EYFKMMKRNY---QLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 431

Query: 181 YANCGKMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
                 +  A   F+R    +  ++ +  ++S   SN  +++ +L    M +   L+
Sbjct: 432 CKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK 488


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 174/610 (28%), Positives = 291/610 (47%), Gaps = 116/610 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL++C T  ++   +Q+H   ++KG+      I ++ L +     N +    +F+ +
Sbjct: 28  ISTLLKACTTTSTL---EQVHARIIRKGLHQDHF-IISQFLTLCNSLSNFSYTTSVFNGV 83

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
              +   WN  I+G+ +      ++ LF  M +     + F++  LI   +K  +  ++ 
Sbjct: 84  SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSK--VCGVKE 141

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
           G   H              GS++     +CG               D F +++LI  Y  
Sbjct: 142 GVAFH--------------GSAV-----RCGVGG------------DVFVMTSLIDLYGK 170

Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
           CG++  AR+VFD   + + V W +MI+GY S ++  EA  LF +M               
Sbjct: 171 CGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEK------------ 218

Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
                                      + +  +A++  Y K G    A K+F E+   + 
Sbjct: 219 ---------------------------NAVSWNAIISGYVKCGDLRSARKMFDEMPHRNV 251

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
           +   TMI  Y+  G +  A+ +F   P + +++W+++I G  QNG P EA+ +F  M   
Sbjct: 252 VSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSR 311

Query: 364 DLRMDKFSLASVISACANISSLELGEQV--FARVTIIGLDSDQIISTSLVDF-------- 413
           +++ D+F + S++SAC+ + SLEL + V  + R + I +    +I+ +L+D         
Sbjct: 312 NVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIA-ALIDMNAKCGSMD 370

Query: 414 ----------------YCK---------CGYDALALFNEMRNTGVKPTIITFTAILSACD 448
                           YC          CG  A++LF+ M N G+ P  + FT IL+AC 
Sbjct: 371 RATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACS 430

Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
             GLV EG  +F++MK  Y I P  +HY+CMVDL  RAG L EA  L++ MP E   G W
Sbjct: 431 RAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAW 490

Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
            ++L  C  H D  LG  VA+++ EL+P+NA  Y+ LS+I+A + +W   SL+R+ MRE+
Sbjct: 491 GALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRER 550

Query: 569 HVGKLPGCSW 578
            + K+PGCSW
Sbjct: 551 GIRKIPGCSW 560



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/472 (25%), Positives = 208/472 (44%), Gaps = 51/472 (10%)

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIHSHILVNGLDFDS 140
           M    +  +L   + +P    F     IS   KA    + LE   Q+H+ I+  GL  D 
Sbjct: 1   MTFIRRYTALTFPDYLPTLRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDH 57

Query: 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200
            + S  + L     +F+    V N +  P                               
Sbjct: 58  FIISQFLTLCNSLSNFSYTTSVFNGVSSP------------------------------- 86

Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
           S+V+WN+ I GY  N   +  + LF +M+R+  + D  T  S++ ACS +  ++ G   H
Sbjct: 87  STVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFH 146

Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
           G A + GV  DV V ++L+D Y K G    A K+F E+   + +    MI  Y+S   + 
Sbjct: 147 GSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLV 206

Query: 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380
           +A+ +F  MP K+ +SWN++I G  + G    A  +F  M   ++     S  ++I   A
Sbjct: 207 EARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNV----VSFTTMIDGYA 262

Query: 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTII 438
               +     VF        + D +  ++L+  Y + G   +A+ +F EM +  VKP   
Sbjct: 263 KSGDMASARFVFEEAP----ERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEF 318

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY-SCMVDLFARAGCLNEAVNLIE 497
              +++SAC   G + E  KW D    +  ID    H  + ++D+ A+ G ++ A  L E
Sbjct: 319 IMVSLMSACSQMGSL-ELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFE 377

Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSS 547
           +MP + D+  + S+++G   HG       +  RM+   L P++    + L++
Sbjct: 378 EMP-KRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTA 428


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 178/628 (28%), Positives = 280/628 (44%), Gaps = 123/628 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKK-------GILNSTLPIANRLLQMYMRCGNPTDA 60
           L  LL  C    ++ +G  +H   +K+       G   + L I N LL MY +CG   +A
Sbjct: 37  LTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDGSQRNALFIWNSLLSMYSKCGEFRNA 96

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA 120
             +FD MP R+  SWN MI GF++ G  + S + F  M + N      +   F KA L  
Sbjct: 97  GNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESN-----RVCCRFDKATLTT 151

Query: 121 LEYG-------------KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167
           +  G             + IH  + V G + +  +G++L+  Y KC  F+          
Sbjct: 152 MLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFS---------- 201

Query: 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 227
                                  R+VFD   + + V W ++ISG   N    ++L LF +
Sbjct: 202 ---------------------QGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQ 240

Query: 228 MRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286
           MR  G V  +  T  S L ACS L  L  G+++HG   K+G+  D+ + SAL+D YSK  
Sbjct: 241 MRCCGSVSPNVLTYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSK-- 298

Query: 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346
                                        CG ++ A  IF +      +S   ++V  +Q
Sbjct: 299 -----------------------------CGSLDAAWQIFESAEELDGVSLTVILVAFAQ 329

Query: 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 406
           NG   EA+ +F  M  L + +D   +++V+      + L LG+Q+ + +       +  +
Sbjct: 330 NGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLALGKQIHSLIIKKNFCENPFV 389

Query: 407 STSLVDFYCKCG---------------------------------YDALALFNEMRNTGV 433
              LV+ Y KCG                                 + AL  + EMR  GV
Sbjct: 390 GNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGFKALQFYEEMRVEGV 449

Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493
            PT +TF ++L AC H GLV++G +  ++M   + I P  EHY+C+VD+  RAG LNEA 
Sbjct: 450 APTDVTFLSLLHACSHAGLVEKGMELLESMTNDHGISPRSEHYACVVDMLGRAGHLNEAK 509

Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553
             IE +P    V +W ++L  C  HGD  +G+  A+R+    P +   Y+ +++I+++ G
Sbjct: 510 KFIEGLPEHGGVLVWQALLGACSIHGDSEMGKYAADRLFSAAPASPAPYVLMANIYSSEG 569

Query: 554 EW-EKSSLIRDIMREKHVGKLPGCSWAD 580
            W E++S I+  M+E  V K  G SW +
Sbjct: 570 NWKERASSIKR-MKEMGVAKEVGISWIE 596


>gi|15231402|ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13880
 gi|9294611|dbj|BAB02912.1| probable selenium-binding protein [Arabidopsis thaliana]
 gi|332641909|gb|AEE75430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 171/602 (28%), Positives = 278/602 (46%), Gaps = 96/602 (15%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C     + +G+ LH   +  G L+  + + N L+ MY +CG    A+ LFD    R+  S
Sbjct: 158 CGERCDLDLGELLHGLVVVNG-LSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVS 216

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-----DLAALEYGKQIHS 129
           WN++I G++++G  E+ L L   M +         +    KA     +   +E G  IH 
Sbjct: 217 WNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHC 276

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
           +    G++FD V+ ++L+++Y K G    A ++ ++M   +    +A+ISG+        
Sbjct: 277 YTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQ------ 330

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
                D  TD +S                +EA  LF  M+R G+    ST + VL ACS+
Sbjct: 331 ----MDEITDEAS----------------SEAFKLFMDMQRRGLEPSPSTFSVVLKACSA 370

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
              LE+G+Q+H   CK     D  + SAL                               
Sbjct: 371 AKTLEYGRQIHALICKNNFQSDEFIGSAL------------------------------- 399

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           I +Y+  G  ED    F +   + + SW SMI    QN     A DLF  +    +R ++
Sbjct: 400 IELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEE 459

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------- 418
           ++++ ++SACA+ ++L  GEQ+       G+D+   + TS +  Y K G           
Sbjct: 460 YTVSLMMSACADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIE 519

Query: 419 ----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                  +AL +F  M+  G+KP    F  +L AC H GLV +G
Sbjct: 520 VQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVTQG 579

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            K+F  MK  Y I+P  +H++C+VDL  R G L++A NLI    F+     W ++L  C 
Sbjct: 580 LKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAENLILSSGFQDHPVTWRALLSSCR 639

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            + D  +G++VAER++EL+PE + +Y+ L +I+  SG    +  +R++MR++ V K P  
Sbjct: 640 VYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPAL 699

Query: 577 SW 578
           SW
Sbjct: 700 SW 701



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 146/564 (25%), Positives = 237/564 (42%), Gaps = 140/564 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L Q+     S+ +GK  H H +K  +      + N LL MY +C     A  LFD MP R
Sbjct: 53  LFQTAAKSGSVVLGKLAHGHMIKSSLNPCLY-LLNNLLNMYCKCRELGFARQLFDRMPER 111

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLAALEYGKQ 126
           N  S+N++I G+ ++G  E++++LF    + N     F++   + GF   +   L+ G+ 
Sbjct: 112 NIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGAL-GFC-GERCDLDLGEL 169

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  ++VNGL     L + L+++Y KCG  + A  + +   E D    ++LISGY   G 
Sbjct: 170 LHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGA 229

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
                                            E L L  KM R+G+      L SVL A
Sbjct: 230 AE-------------------------------EPLNLLAKMHRDGLNLTTYALGSVLKA 258

Query: 247 CS---SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
           C    + GF+E G  +H +  K+G+  D++V +ALLD Y+K G   +A KLFS       
Sbjct: 259 CCINLNEGFIEKGMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFS------- 311

Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-----NGSPIEALDLFC 358
                                    MP+K+++++N+MI G  Q     + +  EA  LF 
Sbjct: 312 ------------------------LMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFM 347

Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
           +M +  L     + + V+ AC+   +LE G Q+ A +      SD+ I ++L++ Y   G
Sbjct: 348 DMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMG 407

Query: 419 ---------------------------------YDALALFNEMRNTGVKPTIITFTAILS 445
                                              A  LF ++ ++ ++P   T + ++S
Sbjct: 408 STEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMS 467

Query: 446 AC-DHCGL----------VKEGQKWFDAMKW----------------QYHID---PEIEH 475
           AC D   L          +K G   F ++K                 Q  I+   P++  
Sbjct: 468 ACADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVAT 527

Query: 476 YSCMVDLFARAGCLNEAVNLIEQM 499
           YS M+   A+ G  NEA+N+ E M
Sbjct: 528 YSAMISSLAQHGSANEALNIFESM 551



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 151/374 (40%), Gaps = 76/374 (20%)

Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
           Y  C ++  AR++FDR  + + + +NS+ISGY       +A+ LF + R   +  D  T 
Sbjct: 92  YCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTY 151

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           A  L  C     L+ G+ +HG     G+   V + + L+D YSK G    A  LF     
Sbjct: 152 AGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDE 211

Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
            D +  N++I+ Y   G  E                               E L+L   M
Sbjct: 212 RDQVSWNSLISGYVRVGAAE-------------------------------EPLNLLAKM 240

Query: 361 NKLDLRMDKFSLASVISACA---NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417
           ++  L +  ++L SV+ AC    N   +E G  +      +G++ D ++ T+L+D Y K 
Sbjct: 241 HRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIVVRTALLDMYAKN 300

Query: 418 G--------------------------------------YDALALFNEMRNTGVKPTIIT 439
           G                                       +A  LF +M+  G++P+  T
Sbjct: 301 GSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPST 360

Query: 440 FTAILSACDHCGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           F+ +L AC     ++ G++    + K  +  D  I   S +++L+A  G   + +     
Sbjct: 361 FSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIG--SALIELYALMGSTEDGMQCFAS 418

Query: 499 MPFEADVGMWSSIL 512
              + D+  W+S++
Sbjct: 419 TS-KQDIASWTSMI 431



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 124/297 (41%), Gaps = 73/297 (24%)

Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
           GK  HGH  K  +   + + + LL+ Y K                               
Sbjct: 66  GKLAHGHMIKSSLNPCLYLLNNLLNMYCK------------------------------- 94

Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
           C  +  A+ +F  MP +++IS+NS+I G +Q G   +A++LF    + +L++DKF+ A  
Sbjct: 95  CRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGA 154

Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFN------- 426
           +  C     L+LGE +   V + GL     +   L+D Y KCG    A++LF+       
Sbjct: 155 LGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQ 214

Query: 427 ------------------------EMRNTGVKPTIITFTAILSACDHC-----GLVKEGQ 457
                                   +M   G+  T     ++L AC  C     G +++G 
Sbjct: 215 VSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKAC--CINLNEGFIEKGM 272

Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
                   +  ++ +I   + ++D++A+ G L EA+ L   MP   +V  +++++ G
Sbjct: 273 A-IHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMP-SKNVVTYNAMISG 327


>gi|91805385|gb|ABE65422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 189/612 (30%), Positives = 295/612 (48%), Gaps = 83/612 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC     +  G+ LH   +K G        A  L+ MYM+    TDAL + DEMP R
Sbjct: 37  LLKSCAKLGDVVQGRILHAQVVKTGFFVDVF-TATALVSMYMKVKQVTDALKVLDEMPER 95

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
              S NA + G ++ G    + ++F                G A+               
Sbjct: 96  GIASVNAAVSGLLENGFCRDAFRMF----------------GDAR--------------- 124

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV--LNMMK--EPDDFCLSALISGYANCGK 186
             V+G   +SV   ++ ++ G CGD     Q+  L M    E + +  ++L+S Y+ CG+
Sbjct: 125 --VSGSGMNSV---TVASVLGGCGDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGE 179

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLS 245
              A R+F++    S V +N+ ISG + N        +F+ MR+    E +  T  + ++
Sbjct: 180 WVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAIT 239

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-VYDTI 304
           AC+SL  L++G+Q+HG   K     + +V +AL+D YSK      A  +F+ELK   + I
Sbjct: 240 ACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLI 299

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNM 360
             N++I+     G+ E A  +F  + ++ L     +WNS+I G SQ G  IEA   F  M
Sbjct: 300 SWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERM 359

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD 420
             + +      L S++SAC++I +L+ G+++   V     + D  + TSL+D Y KCG  
Sbjct: 360 LSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLS 419

Query: 421 -----------------------------------ALALFNEMRNTGVKPTIITFTAILS 445
                                              A+ +F  +R   V+P++ TFTA+LS
Sbjct: 420 SWARRIFDRFEPKPRDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLS 479

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC HCG V++G + F  M+ +Y   P  EH  CM+DL  R+G L EA  +I+QM   +  
Sbjct: 480 ACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSS 539

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
              SS+L  C  H D  LG + A ++ EL+PEN   ++ LSSI+A    WE    IR ++
Sbjct: 540 VY-SSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYAALERWEDVESIRQVI 598

Query: 566 REKHVGKLPGCS 577
            +K + KLPG S
Sbjct: 599 DQKQLVKLPGLS 610



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 111/492 (22%), Positives = 204/492 (41%), Gaps = 86/492 (17%)

Query: 129 SHILVNGLDFDSVLGSS--------LVNLYGKCGDFNSAN----QVLNMMKEPDDFCLSA 176
           S+++  G   D +L  S        L+    K GD         QV+      D F  +A
Sbjct: 12  SNLVTGGTSLDVILSHSPNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATA 71

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+S Y    ++ DA +V D   +      N+ +SG + N    +A  +F   R +G   +
Sbjct: 72  LVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMN 131

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           + T+ASVL  C   G +E G Q+H  A K G   +V V ++L                  
Sbjct: 132 SVTVASVLGGC---GDIEGGMQLHCLAMKSGFEMEVYVGTSL------------------ 170

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                        +++YS CG    A  +F  +P+KS++++N+ I GL +NG       +
Sbjct: 171 -------------VSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSV 217

Query: 357 FCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY- 414
           F  M K      +  +  + I+ACA++ +L+ G Q+   V       + ++ T+L+D Y 
Sbjct: 218 FNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYS 277

Query: 415 -CKCGYDALALFNEMRNT--------------------------------GVKPTIITFT 441
            C+C   A  +F E+++T                                G+KP   T+ 
Sbjct: 278 KCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWN 337

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL---IEQ 498
           +++S     G V E  K+F+ M     + P ++  + ++   +    L     +   + +
Sbjct: 338 SLISGFSQLGKVIEAFKFFERMLSVVMV-PSLKCLTSLLSACSDIWTLKNGKEIHGHVIK 396

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
              E D+ + +S++   +  G     R++ +R  E  P +   +  + S +   GE E +
Sbjct: 397 AAAERDIFVLTSLIDMYMKCGLSSWARRIFDR-FEPKPRDPVFWNVMISGYGKHGECESA 455

Query: 559 SLIRDIMREKHV 570
             I +++RE+ V
Sbjct: 456 IEIFELLREEKV 467



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 43/197 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL +C+   ++  GK++H H +K         +   L+ MYM+CG  + A  +FD  
Sbjct: 371 LTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIF-VLTSLIDMYMKCGLSSWARRIFDRF 429

Query: 68  ---PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
              PR   F WN MI G+ K G  E ++++F ++ ++             +  LA     
Sbjct: 430 EPKPRDPVF-WNVMISGYGKHGECESAIEIFELLREEK-----------VEPSLAT---- 473

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----PDDFCLSALIS 179
                        F +VL +        CG+    +Q+  +M+E     P    +  +I 
Sbjct: 474 -------------FTAVLSAC-----SHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMID 515

Query: 180 GYANCGKMNDARRVFDR 196
                G++ +A+ V D+
Sbjct: 516 LLGRSGRLREAKEVIDQ 532


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 178/601 (29%), Positives = 294/601 (48%), Gaps = 104/601 (17%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           +C     + + K +H   +++ I  +  P+ + L+ MY RC + + A  +F  M  R+  
Sbjct: 209 ACGELGFLRLAKSVHGCIIRQRI-ETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIA 267

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHS 129
           SW AMI  + +    +++LQ+F  M +     N  +   ++S  A  +L  L  GK +H 
Sbjct: 268 SWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNL--LREGKSVHC 325

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
           +  V  +D D                              DD    ALI  YA  GK++ 
Sbjct: 326 YA-VKHIDLD------------------------------DDSLGPALIEYYAQFGKLSY 354

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
             +V       + + WN +IS Y S     EAL +F +M+R G + D+ +L+S +SAC++
Sbjct: 355 CEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACAN 414

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           +G L  G Q+HG+A K  ++D+ +                                 N++
Sbjct: 415 VGLLWLGHQIHGYAIKRHILDEFVQ--------------------------------NSL 442

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
           I +YS CG ++ A  IF  + +KS+++WNSMI G SQ G+ +EA+ LF  M    L M++
Sbjct: 443 IDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNE 502

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD- 420
            +  + I AC+++  LE G+ +  ++   G+  D  I T+L+D Y KCG        +D 
Sbjct: 503 VTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDS 562

Query: 421 ------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456
                                   A++LF EM    +KP  ITF  ILSAC H G V+EG
Sbjct: 563 MSERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEG 622

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
           + +F++MK  + ++P +EH++CMVDL +RAG L+EA  +I  MPF A+  +W ++L GC 
Sbjct: 623 KFYFNSMK-NFEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCR 681

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576
            H    + R +   ++++  ++   Y  LS+I+A  G W+ S  +R  M+   + K+PG 
Sbjct: 682 IHQRMDMIRNIERDLLDMRTDDTGYYTLLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGY 741

Query: 577 S 577
           S
Sbjct: 742 S 742



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 153/600 (25%), Positives = 259/600 (43%), Gaps = 104/600 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L++C    ++ VG+++H   +K G L+    +   LL MY   G  ++A  +FD M
Sbjct: 102 FSSVLRACAGFGNLDVGEEVHGRIIKYG-LDVDHVVETSLLGMYGDLGCLSNAKKVFDNM 160

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF--SWNMLISGFAKADLAALEYGK 125
             R+  SW+++I  ++  G   + L++F ++  ++    S  ML    A  +L  L   K
Sbjct: 161 TTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAK 220

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
            +H  I+   ++    L  +LV +Y +C DF+S                           
Sbjct: 221 SVHGCIIRQRIETRGPLNDALVLMYSRCDDFSS--------------------------- 253

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
               A R+F    + S   W +MIS Y  +    +AL +F +M    V  +A T+ +VLS
Sbjct: 254 ----AERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLS 309

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
           +C+    L  GK VH +A K   +DD  +  AL++ Y++ G  S   K+   +   + I 
Sbjct: 310 SCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIIS 369

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
            N +I+VY+S G       +F+                        EAL +F  M +   
Sbjct: 370 WNMLISVYASQG-------LFK------------------------EALGIFVQMQRQGQ 398

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
             D FSL+S ISACAN+  L LG Q+     I     D+ +  SL+D Y KCG+      
Sbjct: 399 IPDSFSLSSSISACANVGLLWLGHQIHG-YAIKRHILDEFVQNSLIDMYSKCGHVDLAYL 457

Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                      +A+ LF++M    +    +TF   + AC H G 
Sbjct: 458 IFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGH 517

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           +++G KW       Y +  ++   + ++D++A+ G L  A  + + M  E  V  WS+++
Sbjct: 518 LEKG-KWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMS-ERSVVSWSAMI 575

Query: 513 RGCVAHGDKGLGRKVAERMI--ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
            GC  HGD      +   MI  E+ P N   ++ + S  + SG  E+     + M+   V
Sbjct: 576 GGCGMHGDIDAAISLFAEMIQREMKP-NDITFMNILSACSHSGYVEEGKFYFNSMKNFEV 634



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 209/464 (45%), Gaps = 76/464 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L +SC +   + +   LH H L  G L+     + +L++ Y + G    + L+F+     
Sbjct: 7   LFRSCTSLRPLTL---LHSHLLVTG-LHHDPQASTKLIESYSQIGCLQSSKLVFETFQNP 62

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ 126
           + F W  +I+  +      +++ L+N M  K    +DF ++ ++   A A    L+ G++
Sbjct: 63  DSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLR--ACAGFGNLDVGEE 120

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           +H  I+  GLD D V+ +SL+ +YG  G                  CLS           
Sbjct: 121 VHGRIIKYGLDVDHVVETSLLGMYGDLG------------------CLS----------- 151

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
             +A++VFD  T    V W+S+IS Y+ N E +E L +F  +    V  D+ T+ S+  A
Sbjct: 152 --NAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGA 209

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C  LGFL   K VHG   +  +                RG  +DA               
Sbjct: 210 CGELGFLRLAKSVHGCIIRQRI--------------ETRGPLNDA--------------- 240

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
             ++ +YS C     A+ IF  M N+S+ SW +MI   +++    +AL +F  M +  + 
Sbjct: 241 --LVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVA 298

Query: 367 MDKFSLASVISACANISSLELGEQVFA-RVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425
            +  ++ +V+S+CA  + L  G+ V    V  I LD D  +  +L+++Y + G   L+  
Sbjct: 299 PNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDS-LGPALIEYYAQFG--KLSYC 355

Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
            ++ +T  K  II++  ++S     GL KE    F  M+ Q  I
Sbjct: 356 EKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQI 399



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 182/399 (45%), Gaps = 80/399 (20%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G Q+H + +K+ IL+    + N L+ MY +CG+   A L+FD +  ++  +WN+MI GF
Sbjct: 420 LGHQIHGYAIKRHILDEF--VQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGF 477

Query: 83  MKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
            ++G+  ++++LF+ M       N+ ++   I   A + +  LE GK +H  ++  G+  
Sbjct: 478 SQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQ--ACSHMGHLEKGKWLHHKLIAYGVKK 535

Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
           D  + ++L+++Y KCGD   A++V + M E                              
Sbjct: 536 DLFIDTALIDMYAKCGDLRIAHRVFDSMSE------------------------------ 565

Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
             S V W++MI G   + +   A+ LF +M +  +  +  T  ++LSACS  G++E GK 
Sbjct: 566 -RSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGK- 623

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
                            +++ +   +  +   AC                M+ + S  G 
Sbjct: 624 --------------FYFNSMKNFEVEPNLEHFAC----------------MVDLLSRAGD 653

Query: 319 IEDAKHIFRTMPNKSLIS-WNSMIVGLSQNGSPI-EALDLFCNMNK--LDLRMDKFSLAS 374
           +++A  I  +MP  +  S W +++     NG  I + +D+  N+ +  LD+R D     +
Sbjct: 654 LDEAYRIINSMPFPAEASIWGALL-----NGCRIHQRMDMIRNIERDLLDMRTDDTGYYT 708

Query: 375 VISAC-ANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
           ++S   A   + ++  +V + +  IGL      ST  +D
Sbjct: 709 LLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGYSTIELD 747


>gi|15227029|ref|NP_178378.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546778|sp|Q1PFA6.2|PP144_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02750
 gi|2947066|gb|AAC05347.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250526|gb|AEC05620.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 189/612 (30%), Positives = 295/612 (48%), Gaps = 83/612 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC     +  G+ LH   +K G        A  L+ MYM+    TDAL + DEMP R
Sbjct: 37  LLKSCAKLGDVVQGRILHAQVVKTGFFVDVF-TATALVSMYMKVKQVTDALKVLDEMPER 95

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH 130
              S NA + G ++ G    + ++F                G A+               
Sbjct: 96  GIASVNAAVSGLLENGFCRDAFRMF----------------GDAR--------------- 124

Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV--LNMMK--EPDDFCLSALISGYANCGK 186
             V+G   +SV   ++ ++ G CGD     Q+  L M    E + +  ++L+S Y+ CG+
Sbjct: 125 --VSGSGMNSV---TVASVLGGCGDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGE 179

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLS 245
              A R+F++    S V +N+ ISG + N        +F+ MR+    E +  T  + ++
Sbjct: 180 WVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAIT 239

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-VYDTI 304
           AC+SL  L++G+Q+HG   K     + +V +AL+D YSK      A  +F+ELK   + I
Sbjct: 240 ACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLI 299

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNM 360
             N++I+     G+ E A  +F  + ++ L     +WNS+I G SQ G  IEA   F  M
Sbjct: 300 SWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERM 359

Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD 420
             + +      L S++SAC++I +L+ G+++   V     + D  + TSL+D Y KCG  
Sbjct: 360 LSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLS 419

Query: 421 -----------------------------------ALALFNEMRNTGVKPTIITFTAILS 445
                                              A+ +F  +R   V+P++ TFTA+LS
Sbjct: 420 SWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLS 479

Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           AC HCG V++G + F  M+ +Y   P  EH  CM+DL  R+G L EA  +I+QM   +  
Sbjct: 480 ACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSS 539

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
              SS+L  C  H D  LG + A ++ EL+PEN   ++ LSSI+A    WE    IR ++
Sbjct: 540 VY-SSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYAALERWEDVESIRQVI 598

Query: 566 REKHVGKLPGCS 577
            +K + KLPG S
Sbjct: 599 DQKQLVKLPGLS 610



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 111/492 (22%), Positives = 205/492 (41%), Gaps = 86/492 (17%)

Query: 129 SHILVNGLDFDSVLGSS--------LVNLYGKCGDFNSAN----QVLNMMKEPDDFCLSA 176
           S+++  G   D +L  S        L+    K GD         QV+      D F  +A
Sbjct: 12  SNLVTGGTSLDVILSHSPNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATA 71

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           L+S Y    ++ DA +V D   +      N+ +SG + N    +A  +F   R +G   +
Sbjct: 72  LVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMN 131

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
           + T+ASVL  C   G +E G Q+H  A K G   +V V ++L                  
Sbjct: 132 SVTVASVLGGC---GDIEGGMQLHCLAMKSGFEMEVYVGTSL------------------ 170

Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
                        +++YS CG    A  +F  +P+KS++++N+ I GL +NG       +
Sbjct: 171 -------------VSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSV 217

Query: 357 FCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY- 414
           F  M K      +  +  + I+ACA++ +L+ G Q+   V       + ++ T+L+D Y 
Sbjct: 218 FNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYS 277

Query: 415 -CKCGYDALALFNEMRNT--------------------------------GVKPTIITFT 441
            C+C   A  +F E+++T                                G+KP   T+ 
Sbjct: 278 KCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWN 337

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNL---IEQ 498
           +++S     G V E  K+F+ M     + P ++  + ++   +    L     +   + +
Sbjct: 338 SLISGFSQLGKVIEAFKFFERMLSVVMV-PSLKCLTSLLSACSDIWTLKNGKEIHGHVIK 396

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
              E D+ + +S++   +  G     R++ +R  E  P++   +  + S +   GE E +
Sbjct: 397 AAAERDIFVLTSLIDMYMKCGLSSWARRIFDR-FEPKPKDPVFWNVMISGYGKHGECESA 455

Query: 559 SLIRDIMREKHV 570
             I +++RE+ V
Sbjct: 456 IEIFELLREEKV 467



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 43/197 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL +C+   ++  GK++H H +K         +   L+ MYM+CG  + A  +FD  
Sbjct: 371 LTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIF-VLTSLIDMYMKCGLSSWARRIFDRF 429

Query: 68  ---PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYG 124
              P+   F WN MI G+ K G  E ++++F ++ ++             +  LA     
Sbjct: 430 EPKPKDPVF-WNVMISGYGKHGECESAIEIFELLREEK-----------VEPSLAT---- 473

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----PDDFCLSALIS 179
                        F +VL +        CG+    +Q+  +M+E     P    +  +I 
Sbjct: 474 -------------FTAVLSAC-----SHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMID 515

Query: 180 GYANCGKMNDARRVFDR 196
                G++ +A+ V D+
Sbjct: 516 LLGRSGRLREAKEVIDQ 532


>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
          Length = 598

 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 167/593 (28%), Positives = 290/593 (48%), Gaps = 105/593 (17%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           H + +K G + S + ++NR+L  Y++ G    A +LFDEMP+R+  SWN MI G+   G 
Sbjct: 23  HCYAIKCGSI-SDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81

Query: 88  KEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLG 143
            E +  LF  M +     + +S++ L+ G   A +   + G+Q+H  ++  G + +  +G
Sbjct: 82  LEDAWCLFTCMKRSGSDVDGYSFSRLLKGI--ASVKRFDLGEQVHGLVIKGGYECNVYVG 139

Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
           SSLV++Y KC     A +    + EP+                               SV
Sbjct: 140 SSLVDMYAKCERVEDAFEAFKEISEPN-------------------------------SV 168

Query: 204 MWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
            WN++I+G++   +   A  L   M  +  V  DA T A +L+      F    KQVH  
Sbjct: 169 SWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAK 228

Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIED 321
             K+G+  ++ + +A++ +Y+  G  SDA ++F  L    D I  N+MI           
Sbjct: 229 VLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIA---------- 278

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
                                G +Q G   +A+  F  +   ++++D ++ ++++ +C++
Sbjct: 279 ---------------------GFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSD 317

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------YDA 421
           +++L+LG+Q+ A  T  G  S++ + +SL+  Y KCG                    ++A
Sbjct: 318 LATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNA 377

Query: 422 --------------LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
                         L LF++M N  VK   +TFTAIL+AC H GL++EG +  + M+  Y
Sbjct: 378 MILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVY 437

Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKV 527
            I P +EHY+  VDL  RAG +N+A  LIE MP   D  +  + L  C A G+  +  +V
Sbjct: 438 KIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQV 497

Query: 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
           A  ++E++PE+   Y+ LS +++   +WE+ + ++ +M+E+ V K+PG SW +
Sbjct: 498 ANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIE 550



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 37/190 (19%)

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
            H +A K G I D+ V++ +LD+Y K G    A  LF E+   D++  NTMI+ Y+SCG+
Sbjct: 22  THCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +EDA  +F  M                ++GS +                D +S + ++  
Sbjct: 82  LEDAWCLFTCM---------------KRSGSDV----------------DGYSFSRLLKG 110

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPT 436
            A++   +LGEQV   V   G + +  + +SLVD Y KC    DA   F E+     +P 
Sbjct: 111 IASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEIS----EPN 166

Query: 437 IITFTAILSA 446
            +++ A+++ 
Sbjct: 167 SVSWNALIAG 176


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 171/607 (28%), Positives = 288/607 (47%), Gaps = 104/607 (17%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     +  G Q+H   +K G  N    +   LL MY +C    DA  +FD++  + 
Sbjct: 263 LSACCQGEFVSFGMQVHCDLVKLGFENDPY-VCTSLLTMYSKCKLVEDAENVFDQVSVKK 321

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAKADLAALEYGKQ 126
              WNAMI  ++  G     L+++  M     P  +  + N+L S      + + ++G+ 
Sbjct: 322 TELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSC---CLVGSYDFGRL 378

Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
           IH+ ++   +  +  L S+L+ +Y K                               CG 
Sbjct: 379 IHAELVKRPIQSNVALQSALLTMYSK-------------------------------CGN 407

Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
            +DA  +F+       V W SMISG+  N +  EAL  ++ M   G   D+  +ASV+SA
Sbjct: 408 SDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSA 467

Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
           C+ L  +  G  +HG A K G+  DV VAS+L+D YSK   P  +  +FS+         
Sbjct: 468 CTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSD--------- 518

Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
                                 MP K+L++WNS+I    +NG P  ++ LF  M +  L 
Sbjct: 519 ----------------------MPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLF 556

Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------- 419
            D  S+ SV+ + ++++ L  G+ V   +    + SD  +  +L+D Y KCG+       
Sbjct: 557 PDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKCGFLKYAQHI 616

Query: 420 --------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
                                      A++LF+EMR+ G+ P  ITF ++L++C+HCG +
Sbjct: 617 FQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGFI 676

Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
           +EG K F  M  ++ I+P +EHY  +VDL  RAG L++A   ++ +P E D  +W S+L 
Sbjct: 677 EEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDRSIWLSLLC 736

Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
            C  H +  LG+  A ++++++P     Y+QL +++  +   ++++ +R  M+EK + K 
Sbjct: 737 SCRVHHNVELGKLAAHKLLDIEPSRGSNYVQLLNLYGENELQDRAANLRASMKEKGLKKT 796

Query: 574 PGCSWAD 580
           PGCSW +
Sbjct: 797 PGCSWIE 803



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/541 (23%), Positives = 242/541 (44%), Gaps = 111/541 (20%)

Query: 22  HVG--KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR-NCFSWNAM 78
           H+G  KQ+H + ++K        + + L+ MY  CG P DA  LF E+  + N  +WN M
Sbjct: 169 HLGYAKQIHGYSVRKVFYGDPF-LESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVM 227

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA------LEYGKQIHSHIL 132
           I GF + G  E SL+++ +   +N      L+S    + L+A      + +G Q+H  ++
Sbjct: 228 IGGFGENGLWENSLEVYLLAKNEN----VKLVSASFTSTLSACCQGEFVSFGMQVHCDLV 283

Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 192
             G                                E D +  ++L++ Y+ C  + DA  
Sbjct: 284 KLGF-------------------------------ENDPYVCTSLLTMYSKCKLVEDAEN 312

Query: 193 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 252
           VFD+ +   + +WN+MIS Y+ N    + L ++ +M+   +  D+ T  +VLS+C  +G 
Sbjct: 313 VFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGS 372

Query: 253 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312
            + G+ +H    K  +  +V + SALL  YSK G   DA  +F+ +K             
Sbjct: 373 YDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIK------------- 419

Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
                              + +++W SMI G  QN   +EAL+ + +M     + D   +
Sbjct: 420 ------------------GRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIM 461

Query: 373 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD------------ 420
           ASV+SAC  + ++ LG  +       GL+ D  +++SLVD Y K  +             
Sbjct: 462 ASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPL 521

Query: 421 ---------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459
                                +++LF++M   G+ P  ++ T++L +     ++++G+  
Sbjct: 522 KNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAV 581

Query: 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
              +  Q  I  +++  + ++D++ + G L  A ++ + M  + ++  W+ ++ GC +HG
Sbjct: 582 HGYLIRQ-RIPSDLQLENALIDMYIKCGFLKYAQHIFQNM-LQTNLVTWNIMIAGCGSHG 639

Query: 520 D 520
           D
Sbjct: 640 D 640



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 132/555 (23%), Positives = 225/555 (40%), Gaps = 116/555 (20%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           TR  Y   LL++C    ++  GK +H   + KG   S   I   L+  Y +CG+  +A+ 
Sbjct: 48  TRFTY-PSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVK 106

Query: 63  LFDEMPR-----RNCFSWNAMIEGFMKLGHKEKS------LQLFNVMPQKNDFSWNMLIS 111
           +FD++P      ++   WN+++ G+ + GHK++       +QLF V P  + +S  +L+ 
Sbjct: 107 VFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRP--DAYSLCILLG 164

Query: 112 GFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
               A    L Y KQIH + +      D  L S L+ +                      
Sbjct: 165 ----ASDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYM---------------------- 198

Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRR 230
                    Y +CG+  DA R+F    D  +V+ WN MI G+  N     +L ++   + 
Sbjct: 199 ---------YFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKN 249

Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
             V   +++  S LSAC    F+  G QVH    K+G  +D  V ++LL  YSK  +  D
Sbjct: 250 ENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVED 309

Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
           A  +F ++ V  T L N MI+ Y   GR  D   I++                       
Sbjct: 310 AENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYK----------------------- 346

Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
                    M  L +  D  +  +V+S+C  + S + G  + A +    + S+  + ++L
Sbjct: 347 --------QMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSAL 398

Query: 411 VDFYCKCG---------------------------------YDALALFNEMRNTGVKPTI 437
           +  Y KCG                                  +AL  +N M   G KP  
Sbjct: 399 LTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDS 458

Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
               +++SAC     V  G      +  +  ++ ++   S +VD++++      + N+  
Sbjct: 459 DIMASVVSACTGLKNVNLGCT-IHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFS 517

Query: 498 QMPFEADVGMWSSIL 512
            MP +  V  W+SI+
Sbjct: 518 DMPLKNLVA-WNSII 531



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 201/442 (45%), Gaps = 71/442 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L SC    S   G+ +H   +K+ I  S + + + LL MY +CGN  DA  +F+ +  R
Sbjct: 363 VLSSCCLVGSYDFGRLIHAELVKRPI-QSNVALQSALLTMYSKCGNSDDANSIFNTIKGR 421

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
           +  +W +MI GF +     ++L+ +N M    +   + +++    A   L  +  G  IH
Sbjct: 422 DVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIH 481

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
              + +GL+ D  + SSLV++Y K                              N  KM+
Sbjct: 482 GLAIKSGLEQDVFVASSLVDMYSK-----------------------------FNFPKMS 512

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
               VF      + V WNS+IS Y  N     ++ LF +M + G+  D+ ++ SVL + S
Sbjct: 513 G--NVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVS 570

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
           S+  L  GK VHG+  +  +  D+ + +AL+D Y K                        
Sbjct: 571 SVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIK------------------------ 606

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                  CG ++ A+HIF+ M   +L++WN MI G   +G  ++A+ LF  M    +  D
Sbjct: 607 -------CGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPD 659

Query: 369 KFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGY--DALALF 425
             +  S++++C +   +E G ++F  +T+  G++       ++VD   + G   DA A  
Sbjct: 660 DITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAF- 718

Query: 426 NEMRNTGVKPTIITFTAILSAC 447
             ++N  ++P    + ++L +C
Sbjct: 719 --VKNLPIEPDRSIWLSLLCSC 738


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 226/445 (50%), Gaps = 64/445 (14%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D    + LI+ Y  CG+ + ARRVFD  +  S + WN+MI+GY  N ED EAL LF +M 
Sbjct: 90  DTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMH 149

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
           R G      TL+S L AC++   +   KQ+H  A K+ +     V +A LD Y+K     
Sbjct: 150 REGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAK----- 204

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
                                     C  I+DA  +F  MP K+ ++W+S+  G  QNG 
Sbjct: 205 --------------------------CNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGL 238

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
             E L LF +  +  +++ +F+++S++S CA+++ +  G QV A +   G   +  ++TS
Sbjct: 239 HEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATS 298

Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
           LVD Y KCG                                 ++A+ LF +M+  G+ P 
Sbjct: 299 LVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPN 358

Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
            +T+ +ILSAC H GLV+EG+ +F+ +      +P + HYSCMVD+  R+G  +EA  L+
Sbjct: 359 EVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLL 418

Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
           ++MPFE    MW S+L     H +  L R  AE++  L+PEN   ++ LS+++A SG WE
Sbjct: 419 DKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWE 478

Query: 557 KSSLIRDIMREKHVGKLPGCSWADG 581
              + R  +R+    K  G SW + 
Sbjct: 479 NVVVARKYLRDSGAKKEMGRSWIEA 503



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 137/289 (47%), Gaps = 38/289 (13%)

Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           V DT+  N +I +Y+ CG+ + A+ +F  M  +S+ISWN+MI G + N   +EAL LF  
Sbjct: 88  VTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSR 147

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-- 417
           M++   +M +F+L+S + ACA   ++   +Q+      + LDS   + T+ +D Y KC  
Sbjct: 148 MHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNM 207

Query: 418 ------------------------GY-------DALALFNEMRNTGVKPTIITFTAILSA 446
                                   G+       + L LF   +  G++ T  T ++ILS 
Sbjct: 208 IKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILST 267

Query: 447 CDHCGLVKEGQKWFDAM-KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
           C    L+ EG +    + K  +H +  +   + +VD++A+ G + ++  +   M  E +V
Sbjct: 268 CASLALIIEGTQVHAVIVKHGFHRNLFVA--TSLVDVYAKCGQIEKSYEVFADME-EKNV 324

Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSIFATSG 553
            +W++++     H        + E+M ++    N   Y+ + S  + +G
Sbjct: 325 VLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTG 373



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 9/168 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C +   I  G Q+H   +K G  +  L +A  L+ +Y +CG    +  +F +M
Sbjct: 261 VSSILSTCASLALIIEGTQVHAVIVKHG-FHRNLFVATSLVDVYAKCGQIEKSYEVFADM 319

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
             +N   WNAMI  F +  H  +++ LF  M Q     N+ ++  ++S  +   L  +E 
Sbjct: 320 EEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGL--VEE 377

Query: 124 GKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMK-EP 169
           G+   + +L +     +VL  S +V++ G+ G  + A ++L+ M  EP
Sbjct: 378 GRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEP 425


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 163/603 (27%), Positives = 280/603 (46%), Gaps = 103/603 (17%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C++   +  G+ LH   L+  +L   + +   L+ MY RC +   A   FDEM ++   +
Sbjct: 68  CSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA-----LEYGKQIHS 129
           WNA+I G+ + G    +L+++  M  K+          F+ A  A      +  G++I +
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEA 187

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 189
             + +G   DS++ ++L+N+Y K                               CG +  
Sbjct: 188 RTVASGYASDSIVQNALINMYSK-------------------------------CGSLES 216

Query: 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249
           AR+VFDR  +   + WN+MISGY      T+AL LF +M  N    +  T   +L+AC++
Sbjct: 217 ARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN 276

Query: 250 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 309
           L  LE G+ +H    + G   D+++ + LL+ Y+K                         
Sbjct: 277 LEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTK------------------------- 311

Query: 310 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369
                    +E+A+ +F  M  + +I+WN +IV   Q G   +ALD+F  M   ++  ++
Sbjct: 312 -----CSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE 366

Query: 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNE 427
            +L++V+SACA + +   G+ V A +      +D ++  SL++ Y +CG   D + +F  
Sbjct: 367 ITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAA 426

Query: 428 MRNT-------------------------------GVKPTIITFTAILSACDHCGLVKEG 456
           +R+                                G+    +T  + LSAC H G++KEG
Sbjct: 427 IRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEG 486

Query: 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCV 516
            + F +M   + + P+  H+ CMVDL +RAG L  A NLI  MPF  D   W+S+L GC 
Sbjct: 487 VQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCK 546

Query: 517 AHGDKGLGRKVAERMIELDPENACAYIQ-LSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
            H D     +VA+++ EL+ E+  + +  LS+++A +G W+    +R     +   K PG
Sbjct: 547 LHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD---VRKTRNRRAARKNPG 603

Query: 576 CSW 578
           CS+
Sbjct: 604 CSY 606



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/516 (24%), Positives = 213/516 (41%), Gaps = 106/516 (20%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKND 103
           MY +CG+  DAL +F  +   N  SW  ++  F + GH  ++L  +  M      P    
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 104 FSWNMLISGFAKADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQV 162
           F   + +   +K     L+ G+ +H+ IL    L+FD +LG++L+ +Y +C D   A + 
Sbjct: 61  FVVAIGVCSSSK----DLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKT 116

Query: 163 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 222
            + M +      +ALI+GY+  G    A +++      S                     
Sbjct: 117 FDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSP-------------------- 156

Query: 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282
                    G+  DA T +S L AC+ +G +  G+++       G   D IV +AL++ Y
Sbjct: 157 --------EGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMY 208

Query: 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 342
           SK G    A K+F  LK  D I  NTMI+                               
Sbjct: 209 SKCGSLESARKVFDRLKNRDVIAWNTMIS------------------------------- 237

Query: 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 402
           G ++ G+  +AL+LF  M   D + +  +   +++AC N+  LE G  +  +V   G +S
Sbjct: 238 GYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYES 297

Query: 403 DQIISTSLVDFYCKC----------------------------------GYDALALFNEM 428
           D +I   L++ Y KC                                    DAL +F +M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGC 488
           +   V P  IT + +LSAC   G  ++G K   A+        ++   + +++++ R G 
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCGS 416

Query: 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
           L++ V +   +  ++ V  WS+++     HG    G
Sbjct: 417 LDDTVGVFAAIRDKSLVS-WSTLIAAYAQHGHSRTG 451


>gi|357120059|ref|XP_003561748.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Brachypodium distachyon]
          Length = 596

 Score =  259 bits (661), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 176/619 (28%), Positives = 289/619 (46%), Gaps = 78/619 (12%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D R+     L+Q C     +  G+QLH   +   ++ S   +A++L+ +Y R     DA 
Sbjct: 13  DPRV--YGHLIQLCADSGHLAAGQQLHARLVALSVIPSNF-LASKLISLYSRTARLHDAR 69

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKS--LQLF---NVMPQKNDFSWNMLISGFAKA 116
            +FD +P+ N F+WNA++   + L   E S  L+LF    V P +   S  +     +  
Sbjct: 70  RVFDAIPQPNLFAWNAILIA-LSLHSPEPSAALRLFAGSGVSPDEVTVSALLKSLAASGT 128

Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
            L+ L  G +IH+   + G   D                                F  + 
Sbjct: 129 GLSPLVTG-EIHALAFLRGFGTDL-------------------------------FVSNG 156

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR----NG 232
           L++ YAN G +  AR VFD       V WNS+IS         E L LF  + R     G
Sbjct: 157 LVTAYANTGDIRSARAVFDEMPRRDVVSWNSLISACTRVGCYRECLELFSGLVRARAIGG 216

Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
           V  +  T+ SVL +C+ L  ++ G  V   A + G+  D+   ++++  Y+K G    A 
Sbjct: 217 VQPNNVTVTSVLHSCAQLKAVDFGVNVLRVAAESGLDMDIATWNSVVGFYAKCGRLQHAR 276

Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
           +L   +   DT+  + MIT Y + G +E+   +FR    K + +WN++I GL QNG   +
Sbjct: 277 ELLERMPKKDTVSYSAMITGYMNNGHVEEGMSLFRQADAKGINTWNALISGLIQNGRQSD 336

Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
            L L   M    L  +  +L+ +I +    S+L   +Q    V     D    + ++L+D
Sbjct: 337 VLGLLHEMIGASLLPNAATLSIIIPSVPLFSTLLGAKQAHGYVIRNDYDQSNNVVSALID 396

Query: 413 FYCKCGY---------------------------------DALALFNEMRNTGVKPTIIT 439
            Y K G+                                  AL LFN+M   G  P  +T
Sbjct: 397 AYSKAGFLDMAKKVFEWDENRSTIVWTSIIAAVAAHGDVAAALGLFNQMVRAGTCPDTVT 456

Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
           FT +L+AC H G V E ++ FD+M+  + I P +E Y+C+  + +RAG L +A+ L+ +M
Sbjct: 457 FTVVLTACAHVGKVAEAREVFDSMQTVFGISPVMEQYACIASVLSRAGMLTDALELVNKM 516

Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
           PFE +  +W ++L G  A GD  LGR   +R+  ++P+N   YI ++++++ +G+WE + 
Sbjct: 517 PFEPNAKVWGALLNGAAAVGDVQLGRFAFDRLFMIEPKNTGNYIVMANLYSNAGKWEDAE 576

Query: 560 LIRDIMREKHVGKLPGCSW 578
           +IR ++    + K+PGCSW
Sbjct: 577 IIRSMLWGVGLEKVPGCSW 595


>gi|147817099|emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
          Length = 2076

 Score =  259 bits (661), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 177/616 (28%), Positives = 285/616 (46%), Gaps = 116/616 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L+ C+    +   K +H + +K G++     +   L+ +Y +CG   DA LLFD M
Sbjct: 193 LAPVLKLCSNSXCLWAAKGVHGYAIKIGLVWDVF-VFGTLMNIYSKCGRMXDARLLFDGM 251

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAD------ 117
             R+   WN M++G+++LG ++++ QLF+   +     ++FS  ++++G  + +      
Sbjct: 252 RERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLXPDEFSVQLILNGVFEVNXDEGKW 311

Query: 118 -------------------------------LAALEYGKQIHSHILVNGLD--FDSVLGS 144
                                          L A +    I   + +NGL+  +D V   
Sbjct: 312 HADQVQAYXXKLSLSDDNXDVFCWNKKLSEYLWAGDNWGAIECFVNMNGLNVXYDXV--- 368

Query: 145 SLVNLYGKCGD-FNSANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
           +L+ +     D  N + Q+    L      D F  +ALI  Y+  GKM +A  +F    D
Sbjct: 369 TLLEVLAAVADGLNISRQIHVHALKTSNIADSFVATALIDVYSRSGKMEEAELLFQNKDD 428

Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
                WN+M+ GYI +N+  +AL LF  + R+G   D  TLA+   AC  L  L+ GKQ+
Sbjct: 429 LDLACWNAMMFGYIISNDGNKALGLFSLINRSGEKSDQITLATAAKACGCLVLLDZGKQI 488

Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
           H H  K G   D+ V S +LD Y K                               CG +
Sbjct: 489 HAHVIKAGFXSDLYVNSGILDMYIK-------------------------------CGDM 517

Query: 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379
            +A  +F  +     ++W SMI G   NG+  +AL ++  M +  +  D+++ A++I A 
Sbjct: 518 VNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHQMRQSGVMPDEYTFATLIKAS 577

Query: 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------------------- 418
           + +++LE G Q+ A V  +   SD  + TSLVD Y KCG                     
Sbjct: 578 SYVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDXYRLFKKMNVRNIVLWN 637

Query: 419 ------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
                        +A+ LF  M++ G++P  ++F  ILSAC   GL  E  ++F +M   
Sbjct: 638 AMLVGIAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSLAGLTSEAYEYFHSMPND 697

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRK 526
             I+PEIEHYSC+VD    AG + E   +IE MPF+A   M  ++L  C   GD  +G++
Sbjct: 698 CGIEPEIEHYSCLVDALGXAGLVQEXDKVIETMPFKASASMNRALLGACRIQGDVEIGKR 757

Query: 527 VAERMIELDPENACAY 542
           VA R+  L+P ++ AY
Sbjct: 758 VAARLFALEPFDSAAY 773



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 137/596 (22%), Positives = 253/596 (42%), Gaps = 123/596 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++  + H++ +GK  H   +  G       + N LL +Y +CG+ + A  +FD  P R
Sbjct: 90  LLRTAISTHNLLLGKCTHARIVVSGTAGDHF-LTNNLLTLYSKCGSLSFACQVFDTTPER 148

Query: 71  NCFSWNAMIEGFMKL-----GHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEY 123
           +  +WNA++  +        G+ ++ L LF ++ +    +  M ++   K  ++   L  
Sbjct: 149 DLVTWNAILGAYASSVDSNDGNAQEGLHLFRLLRESLGSTTRMTLAPVLKLCSNSXCLWA 208

Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
            K +H + +  GL +D  +  +L+N+Y KCG    A  + + M+E D    + ++ GY  
Sbjct: 209 AKGVHGYAIKIGLVWDVFVFGTLMNIYSKCGRMXDARLLFDGMRERDVVLWNMMLKGYVQ 268

Query: 184 CGKMNDARRVFDR------TTDTSSVM--------------------------------- 204
            G   +A ++F          D  SV                                  
Sbjct: 269 LGLEKEAFQLFSEFHRSGLXPDEFSVQLILNGVFEVNXDEGKWHADQVQAYXXKLSLSDD 328

Query: 205 ------WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
                 WN  +S Y+   ++  A+  F  M    V  D  TL  VL+A +    L   +Q
Sbjct: 329 NXDVFCWNKKLSEYLWAGDNWGAIECFVNMNGLNVXYDXVTLLEVLAAVAD--GLNISRQ 386

Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
           +H HA K   I D  VA+AL+D YS+                                G+
Sbjct: 387 IHVHALKTSNIADSFVATALIDVYSR-------------------------------SGK 415

Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
           +E+A+ +F+   +  L  WN+M+ G   +    +AL LF  +N+   + D+ +LA+   A
Sbjct: 416 MEEAELLFQNKDDLDLACWNAMMFGYIISNDGNKALGLFSLINRSGEKSDQITLATAAKA 475

Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------- 418
           C  +  L+ G+Q+ A V   G  SD  +++ ++D Y KCG                    
Sbjct: 476 CGCLVLLDZGKQIHAHVIKAGFXSDLYVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAW 535

Query: 419 -------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF-DAMK 464
                          AL ++++MR +GV P   TF  ++ A  +   +++G++   + +K
Sbjct: 536 TSMISGCVDNGNEDQALRIYHQMRQSGVMPDEYTFATLIKASSYVTALEQGRQLHANVIK 595

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
                DP +   + +VD++A+ G + +   L ++M    ++ +W+++L G   HG+
Sbjct: 596 LDCVSDPFVG--TSLVDMYAKCGNIEDXYRLFKKMNVR-NIVLWNAMLVGIAQHGN 648



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 178/445 (40%), Gaps = 87/445 (19%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT-----EALLL 224
           D F  + L++ Y+ CG ++ A +VFD T +   V WN+++  Y S+ +       E L L
Sbjct: 118 DHFLTNNLLTLYSKCGSLSFACQVFDTTPERDLVTWNAILGAYASSVDSNDGNAQEGLHL 177

Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
           F  +R +       TLA VL  CS+   L   K VHG+A K+G++ DV V   L++ YSK
Sbjct: 178 FRLLRESLGSTTRMTLAPVLKLCSNSXCLWAAKGVHGYAIKIGLVWDVFVFGTLMNIYSK 237

Query: 285 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM--------------- 329
            G   DA  LF  ++  D +L N M+  Y   G  ++A  +F                  
Sbjct: 238 CGRMXDARLLFDGMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLXPDEFSVQLI 297

Query: 330 ------------------------------PNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
                                          N  +  WN  +      G    A++ F N
Sbjct: 298 LNGVFEVNXDEGKWHADQVQAYXXKLSLSDDNXDVFCWNKKLSEYLWAGDNWGAIECFVN 357

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
           MN L++  D  +L  V++A A+   L +  Q+          +D  ++T+L+D Y + G 
Sbjct: 358 MNGLNVXYDXVTLLEVLAAVAD--GLNISRQIHVHALKTSNIADSFVATALIDVYSRSGK 415

Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
                                             AL LF+ +  +G K   IT      A
Sbjct: 416 MEEAELLFQNKDDLDLACWNAMMFGYIISNDGNKALGLFSLINRSGEKSDQITLATAAKA 475

Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
           C    L+ ZG K   A   +     ++   S ++D++ + G +  A  +   +    DV 
Sbjct: 476 CGCLVLLDZG-KQIHAHVIKAGFXSDLYVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA 534

Query: 507 MWSSILRGCVAHGDKGLGRKVAERM 531
            W+S++ GCV +G++    ++  +M
Sbjct: 535 -WTSMISGCVDNGNEDQALRIYHQM 558


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  259 bits (661), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 182/616 (29%), Positives = 299/616 (48%), Gaps = 99/616 (16%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPT 58
           M    + +  LL+ C T   +   K+LH   +   ++   +P++ RL+    Y   GN  
Sbjct: 1   MKKHYNSILSLLEKCKTMAEL---KRLHGLMITTSVIQDVIPLS-RLVDFCAYSDSGNLN 56

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL 118
            A  +F+++ R + + WN+MI+G+      +++L ++  M QK          G+A    
Sbjct: 57  YAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQK----------GYAP--- 103

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGS-SLVNLY--GKCGDFNSANQVLNMMKEPDDFCLS 175
                          +   F  VL + SLVN Y  G+C      N ++    E D +  +
Sbjct: 104 ---------------DHFTFPFVLKACSLVNGYNLGQC----VHNCIVKTGFEVDVYAAT 144

Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           AL+  YA CG M  A +VFD     + V W S+I+G ISN+  +EA+ ++  M    V  
Sbjct: 145 ALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAP 204

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           +  T+ +VL AC+    L  G+ VH    ++G           LD +             
Sbjct: 205 NEITMVNVLVACARSRDLNAGRWVHDRTGQMG-----------LDPFQSNSN-------- 245

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
                ++ IL   ++ +Y+ CG ++ A+ +F  MP+++L++WNSMI   +Q G   EALD
Sbjct: 246 -----FNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALD 300

Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
           LF +M       DK +   VI ACA++ +L  G+ + A V+   L  D  I T+LVD Y 
Sbjct: 301 LFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYA 360

Query: 416 KCG---------------------------------YDALALFNEMR-NTGVKPTIITFT 441
           K G                                  +AL  F +M+ +T + P  IT+ 
Sbjct: 361 KSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYI 420

Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
            +LSAC H G V++G+  F +MK  + I+P  +HY CMVDL +RAG L EA  L+E+MP 
Sbjct: 421 GVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPV 480

Query: 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561
           E +  +WS++L GC  + +  +  +V  R+ EL+ + +  Y+ LS+I+A +  WE+  + 
Sbjct: 481 EPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMA 540

Query: 562 RDIMREKHVGKLPGCS 577
           R++M+E+ + K  G S
Sbjct: 541 RELMKERKIQKSLGHS 556


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 171/590 (28%), Positives = 286/590 (48%), Gaps = 97/590 (16%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q+H H ++ G  +++L + N L+  Y +      A  LF EMP ++  S+N MI G+ K 
Sbjct: 164 QIHSHIIRFG-FSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKY 222

Query: 86  GHKEKSLQLFNVMPQKN-DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGS 144
           G +E++L+LF  M  +N DF      SGF  A +  +  G +            D + G 
Sbjct: 223 GFREEALKLF--MQMRNMDFQ----PSGFTFAAMLGMSVGSE------------DVIFGQ 264

Query: 145 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 204
            +  L  K                 D F  +AL+  Y+    ++ A+ +FD   +   V 
Sbjct: 265 QIHGLAIKTSYV------------WDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVS 312

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           +N +I+GY  N +  ++  LF +++           A++LS  +    L  G+Q H  A 
Sbjct: 313 YNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAV 372

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
               + +V V +AL+D Y+K                               C + EDA  
Sbjct: 373 VTTAVSEVQVGNALVDMYAK-------------------------------CEKFEDANR 401

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
           IF  +  ++ + W ++I    Q G   EAL +F  MN+ ++  D+ + AS + A AN++S
Sbjct: 402 IFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLAS 461

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALALFNEM--RN---------- 430
           + LG+Q+ + V  +GL S     + LVD Y  CG   DA+ +F EM  RN          
Sbjct: 462 VSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISA 521

Query: 431 -------------------TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                              +G+ P  ++F ++L+AC H GLV++   +F++M   Y +DP
Sbjct: 522 YSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDP 581

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
             +HY+ M+D+  R+G  NEA NLI +MPFE D  MWSS+L  C  H ++ L +K A+++
Sbjct: 582 RRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQL 641

Query: 532 IELDP-ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            ++D   +A AY+ +S+I+A +G+WE ++ ++  MRE+ V K+   SW +
Sbjct: 642 FKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVE 691



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/516 (24%), Positives = 220/516 (42%), Gaps = 78/516 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N  L+  +R      A  LFDEMP RN  S N M+ G++K  +  ++ +LF  M  +N+ 
Sbjct: 50  NFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEV 109

Query: 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 164
           SW ++I G+++ +     +   +++ +  +G+  D +  ++L++ +    D  +  +VL 
Sbjct: 110 SWTIMIGGYSQNNQPKEAFN--LYTEMCRSGVKPDHITFATLLSGF---DDTTTLKEVLQ 164

Query: 165 MMKEPDDFCLSA-------LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
           +      F  SA       L+  Y     ++ A ++F       SV +N MI+GY     
Sbjct: 165 IHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGF 224

Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
             EAL LF +MR         T A++L        +  G+Q+HG A K   + D+ VA+A
Sbjct: 225 REEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANA 284

Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
           LLD YSK      A  LF E+   D +  N +IT Y                      +W
Sbjct: 285 LLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGY----------------------AW 322

Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
                    NG   ++ DLF  +         F  A+++S  A   +L +G Q  A+  +
Sbjct: 323 ---------NGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVV 373

Query: 398 IGLDSDQIISTSLVDFYCKC-------------------------------GY--DALAL 424
               S+  +  +LVD Y KC                               G+  +AL +
Sbjct: 374 TTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKM 433

Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
           F EM    V     TF + L A  +   V  G++   ++  +  +   +   S +VD++A
Sbjct: 434 FKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSV-IRLGLLSSVFSGSVLVDMYA 492

Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
             G + +A+ + ++MP + ++  W++++     +GD
Sbjct: 493 NCGSMKDAIEVFKEMP-DRNIVCWNALISAYSQNGD 527



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 35/294 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L       ++ +G+Q H   +    + S + + N L+ MY +C    DA  +F  +
Sbjct: 348 FATMLSVAAIELNLSMGRQTHAQAVVTTAV-SEVQVGNALVDMYAKCEKFEDANRIFANL 406

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGK 125
             RN   W A+I  +++ G  E++L++F  M ++N        +    A A+LA++  GK
Sbjct: 407 AYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGK 466

Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
           Q+HS ++  GL      GS LV++Y  CG    A +V   M + +  C +ALIS Y+  G
Sbjct: 467 QLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNG 526

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
              DA   F    D                            M  +G+  D+ +  SVL+
Sbjct: 527 ---DAEATFSSFAD----------------------------MIESGLYPDSVSFLSVLT 555

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-LLDTYSKRGMPSDACKLFSEL 298
           ACS  G +E          +V  +D      A ++D   + G  ++A  L SE+
Sbjct: 556 ACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEM 609



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A  L++     S+ +GKQLH   ++ G+L+S     + L+ MY  CG+  DA+ +F EM
Sbjct: 449 FASTLKASANLASVSLGKQLHSSVIRLGLLSSVFS-GSVLVDMYANCGSMKDAIEVFKEM 507

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA--AL 121
           P RN   WNA+I  + + G  E +   F  M +     +  S+  +++  +   L   AL
Sbjct: 508 PDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKAL 567

Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALIS 179
            Y    +S   V  LD      ++++++  + G FN A  +++ M  EPD+   S++++
Sbjct: 568 WY---FNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLN 623


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 151/489 (30%), Positives = 241/489 (49%), Gaps = 64/489 (13%)

Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
           +Q+H+    +G   D    ++L+  Y   GD  +A  +   + + +    + LI G    
Sbjct: 62  RQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKN 121

Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
           G +  AR +FD+    +   WN+M++G  +   D ++L  F  MRR G+  D   L SV 
Sbjct: 122 GDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVF 181

Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
             C+ L  +  G+QVH +  +                    GM SD C            
Sbjct: 182 RCCAGLLDVVSGRQVHAYVVR-------------------SGMDSDMC------------ 210

Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
           + N++  +Y  CG + + + + R +P+ +++S+N+ I G +QNG    AL+ F  M  ++
Sbjct: 211 VGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVE 270

Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
           +  D  +  S IS C+++++L  G+QV A+V   G+D    + TSLV  Y +CG      
Sbjct: 271 VAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSE 330

Query: 419 --YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCG 451
             YD                         A+ LF +M N G +P  +TF A+L AC H G
Sbjct: 331 RVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSG 390

Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
           L  EG ++F+ M   Y   P ++HY+C+VDL  R+GCL+EA  LI  MP  AD  +W ++
Sbjct: 391 LKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTL 450

Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
           L  C    +  +  ++AER+IE DP ++  Y+ LS+I ATS  W   + +R IMREK + 
Sbjct: 451 LSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIR 510

Query: 572 KLPGCSWAD 580
           K PG SW +
Sbjct: 511 KEPGVSWVE 519



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 152/357 (42%), Gaps = 72/357 (20%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N LL  Y   G+   A  LF+ + +RN  SWN +I G +K G    + +LF+ MP +N  
Sbjct: 81  NNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVA 140

Query: 105 SWNMLISGFAKA--DLAALEY-------------------------------GKQIHSHI 131
           +WN +++G      D  +L++                               G+Q+H+++
Sbjct: 141 TWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYV 200

Query: 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
           + +G+D D  +G+SL ++Y +CG       VL  +                         
Sbjct: 201 VRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRAL------------------------- 235

Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
                    + V +N+ I+G   N +   AL  F  MR   V  D  T  S +S CS L 
Sbjct: 236 ------PSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLA 289

Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
            L  G+QVH    K GV   V V ++L+  YS+ G   D+ +++      D  LL+ MI+
Sbjct: 290 ALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMIS 349

Query: 312 VYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
                G+   A  +F+ M      PN+  +++ +++   S +G   E L+ F  M K
Sbjct: 350 ACGFHGQGHKAVELFKQMMNGGAEPNE--VTFLALLYACSHSGLKDEGLEFFELMTK 404


>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
 gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 165/613 (26%), Positives = 294/613 (47%), Gaps = 82/613 (13%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N+ +    + G   +A  LFD+M   N  SWNA+I  ++K     K+ +LF+ MPQ++  
Sbjct: 1   NKKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIV 60

Query: 105 SWNMLISGFAKA-DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163
           SWN++ISG+     +  L+ G+ +   +     + D V  +++++ Y K G  + A ++ 
Sbjct: 61  SWNLMISGYVSCHGIRFLKEGRNLFDRMP----ERDIVSWNTMISGYAKNGRMDEALRMF 116

Query: 164 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223
            +M E D    +A+++G+   G +  A   F+R  +  +   ++++SG I N E  EA  
Sbjct: 117 KLMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMPERDAASLSALVSGLIRNGELDEAAR 176

Query: 224 LFHKMRRNG-----VLEDASTLAS----------VLSACSSLGFLEHGKQVHGHACKVGV 268
           +  +  R+G     +L+  +TL +                 + F +   +         V
Sbjct: 177 VVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNV 236

Query: 269 ID------------DVIVASALLDTYSKRGMPS---------------DACKLFSELKVY 301
           +             +++ A  L D   +R   S               +A +LF E+   
Sbjct: 237 VSWNTMIMCYVKAGNIVFARELFDQMMERDTISWNTMISGYVNMLDMDEASRLFCEMPNP 296

Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
           D    N MI  ++  G ++    +F  MP K+L+SWNS+I G  +N   I A+ +F  M 
Sbjct: 297 DIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQ 356

Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
               + D+ +L+SV+S  A I  L+LG Q+   VT   +  D  I+ +L+  Y +CG   
Sbjct: 357 VEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKTVI-PDVPINNALITMYSRCGAII 415

Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
                                           +AL +F  M++  V+PT ITF ++L AC
Sbjct: 416 EAGTIFDEVKLQKEVISWNAMIGGYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHAC 475

Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
            H GLV+EG++ F++M  ++ I+P +EHY+ +VD+ +R G L +A++LI  MPFE D  +
Sbjct: 476 AHAGLVEEGREIFESMADEFGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFEPDKAV 535

Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
           W ++L     H    + R  AE +I L+P+++  Y+ L +++A  G+W+ ++ +R +M  
Sbjct: 536 WGALLSAAKVHNKIEVARVAAEALIRLEPDSSAPYVLLYNMYADVGQWDSAAEVRIMMER 595

Query: 568 KHVGKLPGCSWAD 580
            ++ K    SW D
Sbjct: 596 SNIKKQAAYSWVD 608



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMI 79
           + +G Q+H    K  I +  +PI N L+ MY RCG   +A  +FDE+  ++   SWNAMI
Sbjct: 380 LQLGMQIHQLVTKTVIPD--VPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMI 437

Query: 80  EGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVN- 134
            G+   G+  ++L++F +M     +    ++  ++   A A L  +E G++I   +    
Sbjct: 438 GGYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHACAHAGL--VEEGREIFESMADEF 495

Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDAR 191
           G++      +SLV++  + G    A  ++N M  EPD     AL+S      K+  AR
Sbjct: 496 GIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVAR 553


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 169/593 (28%), Positives = 288/593 (48%), Gaps = 74/593 (12%)

Query: 25  KQLHLHFLKKGIL-NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           KQLH   + +G+  N T      +       G+ + A  LF ++P  +   WN MI+G+ 
Sbjct: 51  KQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWS 110

Query: 84  KLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           K+    + ++L+       V P  + F +  L++G  K D  AL  GK++H H++  GL 
Sbjct: 111 KVDCDGEGVRLYLNMLKEGVTPDSHTFPF--LLNGL-KRDGGALACGKKLHCHVVKFGL- 166

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
                GS+L                         +  +AL+  Y+ CG M+ AR VFDR 
Sbjct: 167 -----GSNL-------------------------YVQNALVKMYSLCGLMDMARGVFDRR 196

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                  WN MISGY    E  E++ L  +M RN V   + TL  VLSACS +   +  K
Sbjct: 197 CKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCK 256

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           +VH +  +      + + +AL++ Y+  G    A ++F  +K  D I   +++  Y   G
Sbjct: 257 RVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERG 316

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            ++ A+  F  MP +  ISW  MI G  + G   E+L++F  M    +  D+F++ SV++
Sbjct: 317 NLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLT 376

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------------------- 417
           ACA++ SLE+GE +   +    + +D ++  +L+D Y KC                    
Sbjct: 377 ACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT 436

Query: 418 -------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                        G +A+ +F +M++  ++P  IT+  +LSAC+H G+V + +K+F  M+
Sbjct: 437 WTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMR 496

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             + I+P + HY CMVD+  RAG + EA  ++ +MP   +  +W ++L     H D+ + 
Sbjct: 497 SDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMA 556

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
              A++++EL+P+N   Y  L +I+A    W+    +R  + +  + K PG S
Sbjct: 557 ELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFS 609



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 206/430 (47%), Gaps = 44/430 (10%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK+LH H +K G L S L + N L++MY  CG    A  +FD   + + FSWN MI G+ 
Sbjct: 154 GKKLHCHVVKFG-LGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212

Query: 84  KLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSV 141
           ++   E+S++L   M +   +  S  +L+   A + +   +  K++H ++     +    
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           L ++LVN Y  CG+ + A ++   MK  D    ++++ GY   G +  AR  FD+     
Sbjct: 273 LENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRD 332

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            + W  MI GY+      E+L +F +M+  G++ D  T+ SVL+AC+ LG LE G+ +  
Sbjct: 333 RISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKT 392

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
           +  K  + +DV+V +AL+D Y K                               CG  E 
Sbjct: 393 YIDKNKIKNDVVVGNALIDMYFK-------------------------------CGCSEK 421

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+ +F  M  +   +W +M+VGL+ NG   EA+ +F  M  + ++ D  +   V+SAC +
Sbjct: 422 AQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNH 481

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---GYDALA--LFNEMRNTGVKPT 436
              ++   + FA+     + SD  I  SLV + C     G   L    +  +R   + P 
Sbjct: 482 SGMVDQARKFFAK-----MRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPN 536

Query: 437 IITFTAILSA 446
            I + A+L A
Sbjct: 537 SIVWGALLGA 546


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 165/521 (31%), Positives = 261/521 (50%), Gaps = 49/521 (9%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSL--VNLYG 151
           +FN + +     WN +I G +K+D         IH +   N + +  + GS L  + L+ 
Sbjct: 69  VFNQIQRPTLLVWNHMIHGLSKSDRP----NDAIHFY---NTMYYKGIQGSHLTFIFLFK 121

Query: 152 KCGDFNSANQ----VLNMMK---EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 204
            C   +   Q     ++ MK   E   F  +ALI  Y   G++  A++VFD   +   V 
Sbjct: 122 SCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVS 181

Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
           WNS+I GY   N   + L LF +M+   V  D+ T+   +SA   L   E G  +  +  
Sbjct: 182 WNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYID 241

Query: 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
           + GV+ D+ + + L+D Y +RGM   A ++F ++K  + +  N MI  Y+  G +  AK 
Sbjct: 242 EHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKK 301

Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
           +F  MP++ +ISW SMI+G S      EA+ LF  M    ++ D+ ++A+ +SACA++ S
Sbjct: 302 LFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGS 361

Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------- 419
           L+ GE V   +    + SD  +  SL+D YCKCG                          
Sbjct: 362 LDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISG 421

Query: 420 --------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471
                    AL +F++M   G+ PT  TF  +L AC H GLV +G + F +M+  Y + P
Sbjct: 422 LAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAP 481

Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
           E++HY C+VDL  R+G L+ A N I++MP   DV +W  +L  C  HG+  L   V++++
Sbjct: 482 EMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKL 541

Query: 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
           + LDP N   Y+  SS +A S  W+    IR +M   ++ K
Sbjct: 542 LVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQK 582



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 219/447 (48%), Gaps = 37/447 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L +SC     +  G+ + +H +K G   S L ++N L+ MY+  G    A  +FD M  R
Sbjct: 119 LFKSCARVSDVRQGQMVRVHSMKLG-FESYLFVSNALIHMYVCFGELAMAQKVFDGMLER 177

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--DFSWNMLISGFAKADLAALEYGKQIH 128
           +  SWN++I G+ +    +K L LF  M   N    S  M+ +  A   L+  E G  + 
Sbjct: 178 DVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLV 237

Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
            +I  +G+  D  LG++L+++YG+ G  + A +V   MKE +    +A+I GYA  G + 
Sbjct: 238 KYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLV 297

Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
            A+++F+       + W SMI GY    +  EA+ LF +M  + V  D  T+A+ LSAC+
Sbjct: 298 AAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACA 357

Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
            LG L+ G+ VH +  K  +  DV V ++L+D Y K G+   A ++F+++K  D+     
Sbjct: 358 HLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDS----- 412

Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
                                     +SW S+I GL+ NG    AL++F  M K  +   
Sbjct: 413 --------------------------VSWTSIISGLAVNGFAESALNVFDQMLKEGICPT 446

Query: 369 KFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGYDALALFNE 427
             +   V+ ACA++  ++ G + F  +     L  +      +VD  C+ GY  +A +N 
Sbjct: 447 HGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMA-YNF 505

Query: 428 MRNTGVKPTIITFTAILSACD-HCGLV 453
           ++   + P ++ +  +LSAC  H  LV
Sbjct: 506 IKKMPIVPDVVIWRILLSACKLHGNLV 532



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/438 (21%), Positives = 173/438 (39%), Gaps = 98/438 (22%)

Query: 161 QVLNMMKEPDDFCLSALISGYA-NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219
           Q++      D   +S +I  YA +   +  A  VF++    + ++WN MI G   ++   
Sbjct: 36  QLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPN 95

Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
           +A+  ++ M   G+     T   +  +C+ +  +  G+ V  H+ K+G    + V++AL+
Sbjct: 96  DAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALI 155

Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
             Y         C  F EL +                     A+ +F  M  + ++SWNS
Sbjct: 156 HMY--------VC--FGELAM---------------------AQKVFDGMLERDVVSWNS 184

Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
           +I G  Q     + LDLF  M  +++R D  ++   ISA   +S  E+G+ +   +   G
Sbjct: 185 IICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHG 244

Query: 400 LDSDQIISTSLVDFYCKCG---------------------------------YDALALFN 426
           +  D  +  +L+D Y + G                                   A  LFN
Sbjct: 245 VVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFN 304

Query: 427 EMRN-------------------------------TGVKPTIITFTAILSACDHCGLVKE 455
           EM +                               + VKP  IT    LSAC H G +  
Sbjct: 305 EMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDA 364

Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
           G+   D ++ ++ I  ++   + ++D++ + G + +A+ +   M     V  W+SI+ G 
Sbjct: 365 GEAVHDYIR-KHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVS-WTSIISGL 422

Query: 516 VAHGDKGLGRKVAERMIE 533
             +G       V ++M++
Sbjct: 423 AVNGFAESALNVFDQMLK 440



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L +C    S+  G+ +H  +++K  + S + + N L+ MY +CG    AL +F++M
Sbjct: 349 VATALSACAHLGSLDAGEAVH-DYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDM 407

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
             R+  SW ++I G    G  E +L +F+ M
Sbjct: 408 KTRDSVSWTSIISGLAVNGFAESALNVFDQM 438


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 151/502 (30%), Positives = 251/502 (50%), Gaps = 41/502 (8%)

Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
           A    + +H+  +V+GL  D  + SSL++ Y + G   +A  V + M E +    SALI+
Sbjct: 32  AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIA 91

Query: 180 GYANCGKMNDARRVFDRT----TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
           GY+  G    A  + ++      + + + WN ++SG   +    +A+    +M   G   
Sbjct: 92  GYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFP 151

Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
           DA+ ++  LSA   +  +  GKQVHG+  K G   D  V +AL+D Y K G   +  ++F
Sbjct: 152 DATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVF 211

Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLISWNSMIVGLSQNGSPI 351
            E    D    N ++   S   ++ +A  +FR    +    +++SW S++    QNG  +
Sbjct: 212 HESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDL 271

Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
           EA+DLF  M  + +  +  ++  V+ A AN+++L  G          G   D  + ++LV
Sbjct: 272 EAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALV 331

Query: 412 DFYCKCGY---------------------------------DALALFNEMRNTGVKPTII 438
           D Y KCG                                  +A+ LF  M+    KP ++
Sbjct: 332 DMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLV 391

Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
           TFT +L AC   GL +EG+++F+ M+  + I P +EHY+CMV L  R+G L+EA +LI +
Sbjct: 392 TFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINE 451

Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
           MPFE D  +W S+L  C  +G+  L    AE++ +L+P NA  Y+ LS+I+A+   W+  
Sbjct: 452 MPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGV 511

Query: 559 SLIRDIMREKHVGKLPGCSWAD 580
           + +RD M+   + K  GCSW +
Sbjct: 512 NRVRDEMKNMGLKKEKGCSWIE 533



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 132/343 (38%), Gaps = 92/343 (26%)

Query: 21  IHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNP---------------------- 57
           + VGKQ+H + +K G  L++ +  A  L+ MY +CG                        
Sbjct: 169 VSVGKQVHGYVVKAGCRLDACVVTA--LIDMYGKCGRADEIVRVFHESSHMDVASCNALV 226

Query: 58  ---------TDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----Q 100
                    ++ALLLF E   R    N  SW +++   ++ G   +++ LF  M     +
Sbjct: 227 AGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVE 286

Query: 101 KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160
            N  +   ++  FA  ++AAL +G+  H   L  G   D  +GS+LV++Y KCG    A 
Sbjct: 287 PNSVTIPCVLPAFA--NVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHAR 344

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
            + + M   +    +A+I GYA  G                               +   
Sbjct: 345 TIFDAMPSRNVVSWNAMIGGYAMHG-------------------------------DAAN 373

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK-------QVHG-------HACKV 266
           A+ LF  M++     D  T   VL ACS  G  E G+       Q HG       +AC V
Sbjct: 374 AVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMV 433

Query: 267 GVIDDVIVASALLDTYSKRGMPSDAC---KLFSELKVYDTILL 306
            ++          D  ++     D+C    L    +VY  +LL
Sbjct: 434 TLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLL 476


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 159/545 (29%), Positives = 271/545 (49%), Gaps = 76/545 (13%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEYGKQIHS 129
           F  +A++  + K      + ++F+ M +++   WN ++SG  K    D A L +G  +  
Sbjct: 142 FVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVK- 200

Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDF--NSANQVLNMMK--EPDDFCLSALISGYANCG 185
                G+ FDS   ++++    +  D       Q L M        + ++ L   Y+ CG
Sbjct: 201 ----GGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCG 256

Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
           ++  AR +F +      V +N+MISGY  NNE   ++ LF ++  +G   ++S++  ++ 
Sbjct: 257 EIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIP 316

Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
                G L   + +HG   K GV+ +  V++AL                           
Sbjct: 317 VFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTAL--------------------------- 349

Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
                TVYS    IE A+ +F     KSL SWN+MI G +QNG   +A+ LF  M K ++
Sbjct: 350 ----TTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEV 405

Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
           R +  ++ S++SACA + +L LG+ V   +     +S+  +ST+L+D Y KCG       
Sbjct: 406 RPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQR 465

Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
                                     ++AL LFNEM ++ V PT +TF ++L AC H GL
Sbjct: 466 LFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGL 525

Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
           V+EG + F +M   +  +P  EHY+CMVDL  RAG L++A++ I +MP E    +W ++L
Sbjct: 526 VREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALL 585

Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
             C+ H D  L R  ++++ ELDP+N   Y+ LS+I++    + +++ +R +++ + + K
Sbjct: 586 GACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAK 645

Query: 573 LPGCS 577
            PGC+
Sbjct: 646 TPGCT 650



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 171/353 (48%), Gaps = 6/353 (1%)

Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
           D F  SA+++ Y    ++  AR+VFD   +  +V+WN+M+SG + N+   EA+L+F  M 
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMV 199

Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
           + G+  D++T+A+VL   + L  L  G  +   A KVG      V + L   YSK G   
Sbjct: 200 KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIE 259

Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
            A  LF ++   D +  N MI+ Y+     E +  +F+ +        +S IVGL     
Sbjct: 260 TARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFF 319

Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS-T 408
           P   L L   ++    +    S +SV +A   + S  L E   AR+         + S  
Sbjct: 320 PFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYS-RLNEIESARLLFDESSEKSLASWN 378

Query: 409 SLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466
           +++  Y + G    A++LF EM+   V+P  +T T+ILSAC   G +  G KW   +  +
Sbjct: 379 AMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDLINR 437

Query: 467 YHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
              +  I   + ++D++A+ G + EA  L   MP E +   W++++ G   HG
Sbjct: 438 ESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHG 489



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 10/266 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    ++ +GK +H   + +    S + ++  L+ MY +CG+ T+A  LF  M
Sbjct: 412 VTSILSACAQLGALSLGKWVH-DLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMM 470

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM--PQKNDFSWNMLISGFAKADLAALEYGK 125
           P +N  +WNAMI G+   G+  ++L LFN M   + +      L   +A +    +  G 
Sbjct: 471 PEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGD 530

Query: 126 QI-HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYAN 183
           +I  S +  +G +      + +V+L G+ G+ + A   +  M  EP      AL+     
Sbjct: 531 EIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMI 590

Query: 184 CGKMNDARRVFDR--TTDTSSVMWNSMISGYISNNED-TEALLLFHKMRRNGVLEDASTL 240
               N AR   D+    D  +V +  ++S   S  ++  EA  +   ++R  + +     
Sbjct: 591 HKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPG-- 648

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKV 266
            +++   ++L     G Q H  A  +
Sbjct: 649 CTLIEVANTLHIFTSGDQSHPQATAI 674


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 193/746 (25%), Positives = 325/746 (43%), Gaps = 177/746 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---------------- 54
           +L+ C +  ++  G+Q+H H +    L +++ ++ RL+ MY +C                
Sbjct: 84  VLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHK 143

Query: 55  ---------------GNPTDALLLFDEM-----PRRNC---------------------- 72
                          G P  +L L+ EM     P   C                      
Sbjct: 144 TIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVH 203

Query: 73  ------------FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-SWNMLISGFAK--AD 117
                       F  N+++  + K      + QLF+ MP+K D  SWN +IS ++     
Sbjct: 204 GLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQS 263

Query: 118 LAALE-YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
           + AL  +G+   + +  N   F + L +   + + K G F  A  VL      + F  +A
Sbjct: 264 IEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHAT-VLKSSYYINVFVANA 322

Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           LI+ YA  GKM +A  +F    D  ++ WNSM+SG++ N    EAL  +H+MR  G   D
Sbjct: 323 LIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPD 382

Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY-------------- 282
              + S+++A +  G   HG Q+H +A K G+  D+ V ++L+D Y              
Sbjct: 383 LVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFD 442

Query: 283 -----------------SKRGMPSDACKLFSELKVY------------------------ 301
                            ++ G  S A +LF E+++                         
Sbjct: 443 KMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISS 502

Query: 302 --------------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347
                         D +L N ++ VY  CG ++ A  +F  +  K ++SW SMI     N
Sbjct: 503 VKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHN 562

Query: 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407
           G   EAL+LF  M +  +  D  SL S++SA A++S+L+ G+++   +   G   +  ++
Sbjct: 563 GLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA 622

Query: 408 TSLVDFYCKCG---------------------------------YDALALFNEMRNTGVK 434
           ++LVD Y +CG                                   A+ LF  M +  + 
Sbjct: 623 STLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIA 682

Query: 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVN 494
           P  I F A+L AC H GL+ EG+++ ++MK++Y ++P  EHY+C+VDL  RA  L EA  
Sbjct: 683 PDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQ 742

Query: 495 LIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554
            ++ M  E    +W ++L  C  H +K LG   A++++E+DPEN   Y+ +S++++    
Sbjct: 743 FVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERR 802

Query: 555 WEKSSLIRDIMREKHVGKLPGCSWAD 580
           W+    +R  M+   + K PGCSW +
Sbjct: 803 WKDVEXVRMRMKASGLKKNPGCSWIE 828



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 135/315 (42%), Gaps = 70/315 (22%)

Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
           +SVL  C S   L  G+QVH H         +I ++AL                      
Sbjct: 82  SSVLELCGSKKALSEGQQVHAH---------MITSNAL---------------------- 110

Query: 301 YDTILLNT-MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
           ++++ L+T ++ +Y  CG + DA+ +F  MP+K++ +WN+MI     NG P+ +L+L+  
Sbjct: 111 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 170

Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-- 417
           M    + +D  +   ++ AC  +     G +V       G  S   ++ S+V  Y KC  
Sbjct: 171 MRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCND 230

Query: 418 --------------------------------GYDALALFNEMRNTGVKPTIITFTAILS 445
                                             +AL LF EM+   + P   TF A L 
Sbjct: 231 LNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQ 290

Query: 446 ACDHCGLVKEGQKWF-DAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
           AC+    +K+G       +K  Y+I+  +   + ++ ++AR G + EA N+   M  + D
Sbjct: 291 ACEDSSFIKQGMFIHATVLKSSYYINVFVA--NALIAMYARFGKMGEAANIFYNMD-DWD 347

Query: 505 VGMWSSILRGCVAHG 519
              W+S+L G V +G
Sbjct: 348 TISWNSMLSGFVQNG 362



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 122/262 (46%), Gaps = 39/262 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  ++ +L +C+    I   K++H + ++KG+  S L + N ++ +Y  CGN   A
Sbjct: 480 IDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL--SDLVLQNGIVDVYGECGNVDYA 537

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADL 118
             +F+ +  ++  SW +MI  ++  G   ++L+LF++M +      S +++    A A L
Sbjct: 538 ARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASL 597

Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 178
           +AL+ GK+IH  ++  G   +  L S+LV++Y +CG    +  V N ++  D    +++I
Sbjct: 598 SALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMI 657

Query: 179 SGYA--NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
           + Y    CG+                                  A+ LF +M    +  D
Sbjct: 658 NAYGMHGCGR---------------------------------AAIDLFRRMEDESIAPD 684

Query: 237 ASTLASVLSACSSLGFLEHGKQ 258
                +VL ACS  G +  G++
Sbjct: 685 HIAFVAVLYACSHSGLMNEGRR 706


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 144/453 (31%), Positives = 233/453 (51%), Gaps = 64/453 (14%)

Query: 161 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220
           QV+ +  E D    + L++ Y+ CG +  A +VFD   + S V WN MI   + N E+ +
Sbjct: 23  QVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEK 82

Query: 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280
           A+ +F +M+R G      T++SV+ AC++ G +   +Q+H  A K  V  DV V +AL+D
Sbjct: 83  AIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALID 142

Query: 281 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340
            Y+K                               CG IEDA  +F  MP ++ ++W+S+
Sbjct: 143 VYAK-------------------------------CGSIEDASCVFEGMPERNDVTWSSI 171

Query: 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400
           + G  QN    E L LF    ++ L  ++F ++SVI ACA +++L  G QV A V   G 
Sbjct: 172 VAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGF 231

Query: 401 DSDQIISTSLVDFYCKCGY---------------------------------DALALFNE 427
             +  ++++LVD Y KCG                                  + + LF E
Sbjct: 232 GPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEE 291

Query: 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG 487
           M+ TG++P  +T+ A+LSAC H GLV +G+ +FD M  ++++ P + HYSCMVD+  R G
Sbjct: 292 MQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGG 351

Query: 488 CLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547
            ++EA  L+ +MPF A   MW S+L  C  HG+  L    A+ + E++P+    Y+ L++
Sbjct: 352 LVHEAHELMTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLAN 411

Query: 548 IFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            +A S +WE+++  R  ++   + K  G SW +
Sbjct: 412 TYAASKKWEEAAKARKSLKGSEILKERGKSWIE 444


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 165/580 (28%), Positives = 264/580 (45%), Gaps = 89/580 (15%)

Query: 40  TLPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
            +P+ N      LL  Y RCG   +A  LF+ +P RN  SWNAM+ G+ + G  +++ +L
Sbjct: 90  AMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 95  FNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154
           F++MP ++D SW  +ISG+ K              H+                       
Sbjct: 150 FDMMPWRDDVSWLTMISGYIK------------RKHV----------------------- 174

Query: 155 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214
               A ++ + M  P     +AL+SGY   G M  A  +F +    + V WN MI+GY  
Sbjct: 175 --REARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYAR 232

Query: 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVI 273
                 A  LF +M    VL   + +          G+L++G         K     D +
Sbjct: 233 AGSMGIAQRLFDEMPEKDVLSRTAIMR---------GYLQNGSVDAAWKVFKDMPHRDTV 283

Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
             + ++D + +     DA KLFSE+   D I  + ++  Y   G ++ A   F   PNK 
Sbjct: 284 AWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKD 343

Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
            ISWN++I G    G    AL L   M +  L+ D+ +L+ VIS CA++ SL  G+ V  
Sbjct: 344 AISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHL 399

Query: 394 RVTIIGLDSDQIISTSLVDFYCKCGY---------------------------------D 420
                G + D ++ +SL+  Y KCG                                  +
Sbjct: 400 WAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADE 459

Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
           AL +F+ M   G +P   TF +ILSAC H G + EG   F +M+  +++ P  +HYSCMV
Sbjct: 460 ALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMV 519

Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540
           DL  R+G +++A +   ++P +     W ++   C +HG+  LG  +A  +++  P +  
Sbjct: 520 DLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARNVLKARPSDGG 579

Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
            Y  LS+I+A    W  ++ +R  M+E+ + K  GCSW +
Sbjct: 580 MYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIE 619



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 183/430 (42%), Gaps = 68/430 (15%)

Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
           M E + F  + ++SG      + +AR+VFD     +SV W ++++GY       EA  LF
Sbjct: 60  MSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELF 119

Query: 226 HKM---------------RRNGVLEDASTLASVLSACSSLGFLE--HGKQVHGHACKVGV 268
           +++                RNG+++ A  L  ++     + +L    G     H  +   
Sbjct: 120 NRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARE 179

Query: 269 IDDVI------VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
           + D +      V +ALL  Y + G    A  LF +++  + +  N MIT Y+  G +  A
Sbjct: 180 LFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIA 239

Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM------------------NKLD 364
           + +F  MP K ++S  +++ G  QNGS   A  +F +M                  ++LD
Sbjct: 240 QRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLD 299

Query: 365 --LRM-------DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
             L++       D+ S  +++        ++     F R      + D I   +L+  Y 
Sbjct: 300 DALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAP----NKDAISWNTLISGYK 355

Query: 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475
             G  AL+L +EM   G+KP   T + ++S C    LV  G      M   + I    EH
Sbjct: 356 DEG--ALSLLSEMIRGGLKPDQATLSVVISIC--ASLVSLG---CGKMVHLWAIKTGFEH 408

Query: 476 ----YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
                S ++ ++++ G ++EA  + E +  + D   W++++     HG      KV + M
Sbjct: 409 DALVMSSLISMYSKCGLISEASQVFE-LILQRDTVTWNAMIATYAYHGLADEALKVFDMM 467

Query: 532 IE--LDPENA 539
            +    P++A
Sbjct: 468 TKAGFRPDHA 477



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++  C +  S+  GK +HL  +K G  +  L + + L+ MY +CG  ++A  +F+ +
Sbjct: 378 LSVVISICASLVSLGCGKMVHLWAIKTGFEHDAL-VMSSLISMYSKCGLISEASQVFELI 436

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
            +R+  +WNAMI  +   G  +++L++F++M +
Sbjct: 437 LQRDTVTWNAMIATYAYHGLADEALKVFDMMTK 469


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 169/593 (28%), Positives = 288/593 (48%), Gaps = 74/593 (12%)

Query: 25  KQLHLHFLKKGIL-NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           KQLH   + +G+  N T      +       G+ + A  LF ++P  +   WN MI+G+ 
Sbjct: 51  KQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWS 110

Query: 84  KLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
           K+    + ++L+       V P  + F +  L++G  K D  AL  GK++H H++  GL 
Sbjct: 111 KVDCDGEGVRLYLNMLKEGVTPDSHTFPF--LLNGL-KRDGGALACGKKLHCHVVKFGL- 166

Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
                GS+L                         +  +AL+  Y+ CG M+ AR VFDR 
Sbjct: 167 -----GSNL-------------------------YVQNALVKMYSLCGLMDMARGVFDRR 196

Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
                  WN MISGY    E  E++ L  +M RN V   + TL  VLSACS +   +  K
Sbjct: 197 CKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCK 256

Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
           +VH +  +      + + +AL++ Y+  G    A ++F  +K  D I   +++  Y   G
Sbjct: 257 RVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERG 316

Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377
            ++ A+  F  MP +  ISW  MI G  + G   E+L++F  M    +  D+F++ SV++
Sbjct: 317 NLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLT 376

Query: 378 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------------------- 417
           ACA++ SLE+GE +   +    + +D ++  +L+D Y KC                    
Sbjct: 377 ACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT 436

Query: 418 -------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
                        G +A+ +F +M++  ++P  IT+  +LSAC+H G+V + +K+F  M+
Sbjct: 437 WTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMR 496

Query: 465 WQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524
             + I+P + HY CMVD+  RAG + EA  ++ +MP   +  +W ++L     H D+ + 
Sbjct: 497 SDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMA 556

Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
              A++++EL+P+N   Y  L +I+A    W+    +R  + +  + K PG S
Sbjct: 557 ELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFS 609



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 206/430 (47%), Gaps = 44/430 (10%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK+LH H +K G L S L + N L++MY  CG    A  +FD   + + FSWN MI G+ 
Sbjct: 154 GKKLHCHVVKFG-LGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212

Query: 84  KLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSV 141
           ++   E+S++L   M +   +  S  +L+   A + +   +  K++H ++     +    
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272

Query: 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201
           L ++LVN Y  CG+ + A ++   MK  D    ++++ GY   G +  AR  FD+     
Sbjct: 273 LENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRD 332

Query: 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261
            + W  MI GY+      E+L +F +M+  G++ D  T+ SVL+AC+ LG LE G+ +  
Sbjct: 333 RISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKT 392

Query: 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321
           +  K  + +DV+V +AL+D Y K                               CG  E 
Sbjct: 393 YIDKNKIKNDVVVGNALIDMYFK-------------------------------CGCSEK 421

Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
           A+ +F  M  +   +W +M+VGL+ NG   EA+ +F  M  + ++ D  +   V+SAC +
Sbjct: 422 AQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNH 481

Query: 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---GYDALA--LFNEMRNTGVKPT 436
              ++   + FA+     + SD  I  SLV + C     G   L    +  +R   + P 
Sbjct: 482 SGMVDQARKFFAK-----MRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPN 536

Query: 437 IITFTAILSA 446
            I + A+L A
Sbjct: 537 SIVWGALLGA 546


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,317,842,745
Number of Sequences: 23463169
Number of extensions: 414280047
Number of successful extensions: 1088047
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7926
Number of HSP's successfully gapped in prelim test: 3280
Number of HSP's that attempted gapping in prelim test: 864417
Number of HSP's gapped (non-prelim): 61497
length of query: 686
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 536
effective length of database: 8,839,720,017
effective search space: 4738089929112
effective search space used: 4738089929112
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)