BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005642
(686 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/668 (51%), Positives = 444/668 (66%), Gaps = 95/668 (14%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
Y RLLQSC++ + + +Q + LKKG L+S + +AN LLQMY R G A LFDE
Sbjct: 28 YYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDE 87
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQ-------------------------------LF 95
MP RN FSWN MIEG+M G K SL+ LF
Sbjct: 88 MPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLF 147
Query: 96 NVMPQKNDFSWNMLISGF------------------------------AKADLAALEYGK 125
N MP+K+ + N L+ G+ A A+L AL+ GK
Sbjct: 148 NAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGK 207
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
QIH+ IL+ G++ DS + SSLVN+Y KCGD A+ +L ++EPDD LSALISGYANCG
Sbjct: 208 QIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCG 267
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
++N++R +FDR ++ ++WNSMISGYI+NN EAL+LF++MR N ED+ TLA+V++
Sbjct: 268 RVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRTLAAVIN 326
Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
AC LGFLE GKQ+H HACK G+IDD++VAS LLD YSK G P +ACKLFSE++ YDTIL
Sbjct: 327 ACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTIL 386
Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
LN+MI VY SCGRI+DAK +F + NKSLISWNSM G SQNG +E L+ F M+KLDL
Sbjct: 387 LNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDL 446
Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
D+ SL+SVISACA+ISSLELGEQVFAR TI+GLDSDQ++S+SL+D YCKCG+
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506
Query: 420 ---------------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
+A+ LF +M G++PT ITF +L+AC++CGL
Sbjct: 507 VFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGL 566
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
V+EG+K F++MK + P+ EH+SCMVDL ARAG + EA+NL+E+MPF+ D MWSSIL
Sbjct: 567 VEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626
Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
RGCVA+G K +G+K AE++IEL+PEN+ AY+QLS+IFATSG+WE S+L+R +MRE +V K
Sbjct: 627 RGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTK 686
Query: 573 LPGCSWAD 580
PG SW D
Sbjct: 687 NPGSSWTD 694
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/620 (35%), Positives = 343/620 (55%), Gaps = 56/620 (9%)
Query: 8 LARLLQSC--NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
A+LL SC + +I+V + +H +K G N I NRL+ Y +CG+ D +FD
Sbjct: 22 FAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIF-IQNRLIDAYSKCGSLEDGRQVFD 79
Query: 66 EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL--AALEY 123
+MP+RN ++WN+++ G KLG +++ LF MP+++ +WN ++SGFA+ D AL Y
Sbjct: 80 KMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCY 139
Query: 124 GKQIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM-KEP---DDFCLSALI 178
+H ++N F SVL + D N QV +++ K P D + SAL+
Sbjct: 140 FAMMHKEGFVLNEYSFASVLSAC-----SGLNDMNKGVQVHSLIAKSPFLSDVYIGSALV 194
Query: 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 238
Y+ CG +NDA+RVFD D + V WNS+I+ + N EAL +F M + V D
Sbjct: 195 DMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEV 254
Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSE 297
TLASV+SAC+SL ++ G++VHG K + +D+I+++A +D Y+K +A +F
Sbjct: 255 TLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDS 314
Query: 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357
+ + + I +MI+ Y+ + A+ +F M ++++SWN++I G +QNG EAL LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 358 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLV 411
C + + + +S A+++ ACA+++ L LG Q V G + D + SL+
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434
Query: 412 DFYCKC---------------------------------GYDALALFNEMRNTGVKPTII 438
D Y KC G +AL LF EM +G KP I
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHI 494
Query: 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
T +LSAC H G V+EG+ +F +M + + P +HY+CMVDL RAG L EA ++IE+
Sbjct: 495 TMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEE 554
Query: 499 MPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558
MP + D +W S+L C H + LG+ VAE+++E++P N+ Y+ LS+++A G+WE
Sbjct: 555 MPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDV 614
Query: 559 SLIRDIMREKHVGKLPGCSW 578
+R MR++ V K PGCSW
Sbjct: 615 MNVRKSMRKEGVTKQPGCSW 634
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 168/361 (46%), Gaps = 46/361 (12%)
Query: 236 DASTLASVLSAC--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
D+S A +L +C S L + + + VH K G +++ + + L+D YSK G D +
Sbjct: 18 DSSPFAKLLDSCIKSKLSAI-YVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76
Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
+F ++ + N+++T + G +++A +FR+MP + +WNSM+ G +Q+ EA
Sbjct: 77 VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEA 136
Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
L F M+K ++++S ASV+SAC+ ++ + G QV + + SD I ++LVD
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDM 196
Query: 414 YCKCG---------------------------------YDALALFNEMRNTGVKPTIITF 440
Y KCG +AL +F M + V+P +T
Sbjct: 197 YSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTL 256
Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
+++SAC +K GQ+ + + +I + VD++A+ + EA + + MP
Sbjct: 257 ASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316
Query: 501 FE---ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
A+ M S + + K+AER N ++ L + + +GE E+
Sbjct: 317 IRNVIAETSMISGYAMAASTKAARLMFTKMAER-------NVVSWNALIAGYTQNGENEE 369
Query: 558 S 558
+
Sbjct: 370 A 370
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 334 bits (856), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 213/651 (32%), Positives = 333/651 (51%), Gaps = 72/651 (11%)
Query: 1 MDTRIDYLARLLQ-SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
+ T ++ LLQ S N + + +H +K G++ S + N L+ +Y + G
Sbjct: 9 LSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVY-LMNNLMNVYSKTGYALH 67
Query: 60 ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---- 115
A LFDEMP R FSWN ++ + K G + + + F+ +PQ++ SW +I G+
Sbjct: 68 ARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQY 127
Query: 116 --------------------------ADLAA---LEYGKQIHSHILVNGLDFDSVLGSSL 146
A +AA +E GK++HS I+ GL + + +SL
Sbjct: 128 HKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSL 187
Query: 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206
+N+Y KCGD A V + M D +A+I+ + G+M+ A F++ + V WN
Sbjct: 188 LNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWN 247
Query: 207 SMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACK 265
SMISG+ D AL +F KM R+ +L D TLASVLSAC++L L GKQ+H H
Sbjct: 248 SMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVT 307
Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL--LNTMITVYSSCGRIEDAK 323
G IV +AL+ YS+ G A +L + D + ++ Y G + AK
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAK 367
Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
+IF ++ ++ +++W +MIVG Q+GS EA++LF +M R + ++LA+++S ++++
Sbjct: 368 NIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLA 427
Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------- 418
SL G+Q+ G +S +L+ Y K G
Sbjct: 428 SLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMI 487
Query: 419 ---------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
+AL LF M G++P IT+ + SAC H GLV +G+++FD MK I
Sbjct: 488 IALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKI 547
Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAE 529
P + HY+CMVDLF RAG L EA IE+MP E DV W S+L C H + LG+ AE
Sbjct: 548 IPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAE 607
Query: 530 RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
R++ L+PEN+ AY L+++++ G+WE+++ IR M++ V K G SW +
Sbjct: 608 RLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 319 bits (817), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 187/601 (31%), Positives = 284/601 (47%), Gaps = 99/601 (16%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
N ++ Y + T A +FD +P+ N FSWN ++ + K G + F +P ++
Sbjct: 45 NNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGV 104
Query: 105 SWNMLISGFAKADLAA----------------------------------LEYGKQIHSH 130
+WN+LI G++ + L + GKQIH
Sbjct: 105 TWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQ 164
Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
++ G + ++GS L+ +Y G + A +V + + + ++L+ G CG + DA
Sbjct: 165 VIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDA 224
Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
++F R + SV W +MI G N EA+ F +M+ G+ D SVL AC L
Sbjct: 225 LQLF-RGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGL 283
Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
G + GKQ+H + D + V SAL+D Y K
Sbjct: 284 GAINEGKQIHACIIRTNFQDHIYVGSALIDMYCK-------------------------- 317
Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
C + AK +F M K+++SW +M+VG Q G EA+ +F +M + + D +
Sbjct: 318 -----CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHY 372
Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------ 418
+L ISACAN+SSLE G Q + GL +S SLV Y KCG
Sbjct: 373 TLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432
Query: 419 ---------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457
+ + LF++M G+KP +T T ++SAC GLV++GQ
Sbjct: 433 NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQ 492
Query: 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA 517
++F M +Y I P I HYSCM+DLF+R+G L EA+ I MPF D W+++L C
Sbjct: 493 RYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRN 552
Query: 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
G+ +G+ AE +IELDP + Y LSSI+A+ G+W+ + +R MREK+V K PG S
Sbjct: 553 KGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQS 612
Query: 578 W 578
W
Sbjct: 613 W 613
Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 147/508 (28%), Positives = 236/508 (46%), Gaps = 56/508 (11%)
Query: 3 TRIDYLARL-LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
TR+ + L L S N H + +GKQ+H +K G S L + + LL MY G +DA
Sbjct: 138 TRVTLMTMLKLSSSNGH--VSLGKQIHGQVIKLG-FESYLLVGSPLLYMYANVGCISDAK 194
Query: 62 LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLA-- 119
+F + RN +N+++ G + G E +LQLF M +K+ SW +I G A+ LA
Sbjct: 195 KVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKE 253
Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLS 175
A+E +++ V GL D S++ G G N Q+ + + + S
Sbjct: 254 AIECFREMK----VQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGS 309
Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
ALI Y C ++ A+ VFDR + V W +M+ GY EA+ +F M+R+G+
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDP 369
Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
D TL +SAC+++ LE G Q HG A G+I V V+++L+ Y K G D+ +LF
Sbjct: 370 DHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLF 429
Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
+E+ V D + M++ Y+ GR +E +
Sbjct: 430 NEMNVRDAVSWTAMVSAYAQFGR-------------------------------AVETIQ 458
Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFY 414
LF M + L+ D +L VISAC+ +E G++ F +T G+ + ++D +
Sbjct: 459 LFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLF 518
Query: 415 CKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP- 471
+ G +A+ N M P I +T +LSAC + G ++ G KW A + +DP
Sbjct: 519 SRSGRLEEAMRFINGMP---FPPDAIGWTTLLSACRNKGNLEIG-KW--AAESLIELDPH 572
Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM 499
Y+ + ++A G + L M
Sbjct: 573 HPAGYTLLSSIYASKGKWDSVAQLRRGM 600
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/459 (26%), Positives = 217/459 (47%), Gaps = 53/459 (11%)
Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
Y K IH +I+ ++ L +++V+ Y A +V + + +P+ F + L+ Y
Sbjct: 23 RYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAY 82
Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTL 240
+ G +++ F++ D V WN +I GY + A+ ++ M R+ TL
Sbjct: 83 SKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTL 142
Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
++L SS G + GKQ+HG K+G ++V S LL Y+ G SDA K+F L
Sbjct: 143 MTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDD 202
Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
+T++ N+++ +CG IEDA +FR M S +SW +MI GL+QNG EA++ F M
Sbjct: 203 RNTVMYNSLMGGLLACGMIEDALQLFRGMEKDS-VSWAAMIKGLAQNGLAKEAIECFREM 261
Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--- 417
L+MD++ SV+ AC + ++ G+Q+ A + + ++L+D YCKC
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321
Query: 418 -----------------------GY-------DALALFNEMRNTGVKPTIITFTAILSAC 447
GY +A+ +F +M+ +G+ P T +SAC
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381
Query: 448 DHCGLVKEGQKWFDAMKWQYH---IDPEIEHY----SCMVDLFARAGCLNEAVNLIEQMP 500
+ ++EG Q+H I + HY + +V L+ + G ++++ L +M
Sbjct: 382 ANVSSLEEGS--------QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN 433
Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIE--LDPE 537
D W++++ G ++ ++M++ L P+
Sbjct: 434 VR-DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPD 471
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/500 (33%), Positives = 275/500 (55%), Gaps = 35/500 (7%)
Query: 116 ADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
D +L+ GK IH H+ + G +++L + L+ +Y KCG A +V + M + +
Sbjct: 57 GDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSW 116
Query: 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
+ ++SGY G + AR VFD + V WN+M+ GY + EAL + + RR+G+
Sbjct: 117 NNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIK 176
Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
+ + A +L+AC L+ +Q HG G + +V+++ +++D Y+K G A +
Sbjct: 177 FNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRC 236
Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
F E+ V D + T+I+ Y+ G +E A+ +F MP K+ +SW ++I G + GS AL
Sbjct: 237 FDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRAL 296
Query: 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
DLF M L ++ ++F+ +S + A A+I+SL G+++ + + + I+ +SL+D Y
Sbjct: 297 DLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMY 356
Query: 415 CKCG----------------------------------YDALALFNEMRNTGVKPTIITF 440
K G + AL + ++M V+P T
Sbjct: 357 SKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTL 416
Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
IL+AC H GLV+EG +WF++M Q+ I P+ EHY+C++DL RAGC E + IE+MP
Sbjct: 417 VVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMP 476
Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560
FE D +W++IL C HG++ LG+K A+ +I+LDPE++ YI LSSI+A G+WE
Sbjct: 477 FEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEK 536
Query: 561 IRDIMREKHVGKLPGCSWAD 580
+R +M+++ V K SW +
Sbjct: 537 LRGVMKKRRVNKEKAVSWIE 556
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/501 (29%), Positives = 234/501 (46%), Gaps = 68/501 (13%)
Query: 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
D LA LLQ C S+ GK +H H G ++N L+ MYM+CG P DA +FD
Sbjct: 47 DLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFD 106
Query: 66 EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK---------- 115
+M RN +SWN M+ G++K G ++ +F+ MP+++ SWN ++ G+A+
Sbjct: 107 QMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWF 166
Query: 116 -----------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 152
L+ +Q H +LV G + VL S+++ Y K
Sbjct: 167 YKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAK 226
Query: 153 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 212
CG SA + + M D + LISGYA G M A ++F + + V W ++I+GY
Sbjct: 227 CGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGY 286
Query: 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272
+ AL LF KM GV + T +S L A +S+ L HGK++HG+ + V +
Sbjct: 287 VRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNA 346
Query: 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332
IV S+L+D YSK G + ++F RI D KH
Sbjct: 347 IVISSLIDMYSKSGSLEASERVF----------------------RICDDKH-------- 376
Query: 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
+ WN+MI L+Q+G +AL + +M K ++ ++ +L +++AC++ +E G + F
Sbjct: 377 DCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWF 436
Query: 393 ARVTII-GLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
+T+ G+ DQ L+D + G L ++ +P + AIL C G
Sbjct: 437 ESMTVQHGIVPDQEHYACLIDLLGRAGCFK-ELMRKIEEMPFEPDKHIWNAILGVCRIHG 495
Query: 452 LVKEGQKWFDAMKWQYHIDPE 472
+ G+K D + +DPE
Sbjct: 496 NEELGKKAADEL---IKLDPE 513
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 188/400 (47%), Gaps = 31/400 (7%)
Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
S +S + + E ++A+ + + G+ LAS+L C L+ GK +H H
Sbjct: 15 QSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKI 74
Query: 266 VGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 324
G + ++++ L+ Y K G P DACK+F ++ + + N M++ Y G + A+
Sbjct: 75 TGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARV 134
Query: 325 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384
+F +MP + ++SWN+M++G +Q+G+ EAL + + ++ ++FS A +++AC
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQ 194
Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTA 442
L+L Q +V + G S+ ++S S++D Y KCG A F+EM I +T
Sbjct: 195 LQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEM----TVKDIHIWTT 250
Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM--- 499
++S G ++ +K F M + + ++ ++ + R G N A++L +M
Sbjct: 251 LISGYAKLGDMEAAEKLFCEMPEKNPVS-----WTALIAGYVRQGSGNRALDLFRKMIAL 305
Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKS 558
+ + +SS L + G+++ MI + NA L +++ SG E S
Sbjct: 306 GVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEAS 365
Query: 559 SLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLAN 598
+ I +KH +C F +TM LA
Sbjct: 366 ERVFRICDDKH---------------DCVFWNTMISALAQ 390
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 194/609 (31%), Positives = 310/609 (50%), Gaps = 106/609 (17%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
++ L++C + GK++H +K ++ + LL MY +CG A +F+++
Sbjct: 145 FSKALKACTELQDLDNGKKIHCQLVKVPSFDNV--VLTGLLDMYAKCGEIKSAHKVFNDI 202
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLAALEY 123
RN W +MI G++K E+ L LFN M + N ++++ LI K L+AL
Sbjct: 203 TLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTK--LSALHQ 260
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
GK H ++ +G++ S L +SL+++Y KC
Sbjct: 261 GKWFHGCLVKSGIELSSCLVTSLLDMYVKC------------------------------ 290
Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
G +++ARRVF+ + VMW +MI GY N EAL LF KM+ + + T+ASV
Sbjct: 291 -GDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASV 349
Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
LS C + LE G+ VHG + KVG+ +DT
Sbjct: 350 LSGCGLIENLELGRSVHGLSIKVGI--------------------------------WDT 377
Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
+ N ++ +Y+ C + DAK++F K +++WNS+I G SQNGS EAL LF MN
Sbjct: 378 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE 437
Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCG--- 418
+ + ++AS+ SACA++ SL +G + A +G S + T+L+DFY KCG
Sbjct: 438 SVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQ 497
Query: 419 -----YD-------------------------ALALFNEMRNTGVKPTIITFTAILSACD 448
+D +L LF EM KP TFT+ILSAC
Sbjct: 498 SARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACG 557
Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMW 508
H G+V EG+K+F +M Y+ P +HY+CMVD+ ARAG L +A+++IE+MP + DV +
Sbjct: 558 HTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCF 617
Query: 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
+ L GC H LG V ++M++L P++A Y+ +S+++A+ G W ++ +R++M+++
Sbjct: 618 GAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQR 677
Query: 569 HVGKLPGCS 577
+ K+ G S
Sbjct: 678 GLSKIAGHS 686
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 144/562 (25%), Positives = 245/562 (43%), Gaps = 111/562 (19%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL C S+ +Q H G++ + IA +L+ +Y G DA L+FD++P
Sbjct: 50 LLSKCTNIDSL---RQSHGVLTGNGLMGD-ISIATKLVSLYGFFGYTKDARLVFDQIPEP 105
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-----DLAALEYGK 125
+ + W M+ + + ++L++++ K+ F ++ ++ F+KA +L L+ GK
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLL-MKHGFRYDDIV--FSKALKACTELQDLDNGK 162
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
+IH LV FD+V+ L+ L+ YA CG
Sbjct: 163 KIHCQ-LVKVPSFDNVV-------------------------------LTGLLDMYAKCG 190
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
++ A +VF+ T + V W SMI+GY+ N+ E L+LF++MR N VL + T +++
Sbjct: 191 EIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIM 250
Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
AC+ L L GK HG K G+ + ++LLD Y K G S+A ++F+E D ++
Sbjct: 251 ACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVM 310
Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
MI Y + NGS EAL LF M +++
Sbjct: 311 WTAMIVGY-------------------------------THNGSVNEALSLFQKMKGVEI 339
Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
+ + ++ASV+S C I +LELG V +G+ D ++ +LV Y KC
Sbjct: 340 KPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAKY 398
Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
++AL LF+ M + V P +T ++ SAC G
Sbjct: 399 VFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGS 458
Query: 453 VKEGQKWFD-AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
+ G ++K + + + ++D +A+ G A LI E + WS++
Sbjct: 459 LAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA-RLIFDTIEEKNTITWSAM 517
Query: 512 LRGCVAHGDKGLGRKVAERMIE 533
+ G GD ++ E M++
Sbjct: 518 IGGYGKQGDTIGSLELFEEMLK 539
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 315 bits (808), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 194/630 (30%), Positives = 320/630 (50%), Gaps = 82/630 (13%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+ ++C S+ G+ H L G +++ + N L+ MY RC + +DA +FDEM
Sbjct: 133 VFKACGEISSVRCGESAHALSLVTGFISNVF-VGNALVAMYSRCRSLSDARKVFDEMSVW 191
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN----MLISGFAK-ADLAALEYGK 125
+ SWN++IE + KLG + +L++F+ M N+F L++ A L GK
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRM--TNEFGCRPDNITLVNVLPPCASLGTHSLGK 249
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
Q+H + + + + +G+ LV++Y KCG + AN V + M D +A+++GY+ G
Sbjct: 250 QLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIG 309
Query: 186 KMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
+ DA R+F++ + V W++ ISGY EAL + +M +G+ + TL
Sbjct: 310 RFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 369
Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
SVLS C+S+G L HGK++H +A K + K G +
Sbjct: 370 SVLSGCASVGALMHGKEIHCYAIKYPI------------DLRKNGHGDE----------- 406
Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCN 359
+++N +I +Y+ C +++ A+ +F ++ K +++W MI G SQ+G +AL+L
Sbjct: 407 -NMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSE 465
Query: 360 MNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ-----IISTSLVD 412
M + D R + F+++ + ACA++++L +G+Q+ A L + Q +S L+D
Sbjct: 466 MFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA----YALRNQQNAVPLFVSNCLID 521
Query: 413 FYCKCGY---------------------------------DALALFNEMRNTGVKPTIIT 439
Y KCG +AL +F+EMR G K +T
Sbjct: 522 MYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVT 581
Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
+L AC H G++ +G ++F+ MK + + P EHY+C+VDL RAG LN A+ LIE+M
Sbjct: 582 LLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEM 641
Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
P E +W + L C HG LG AE++ EL + +Y LS+++A +G W+ +
Sbjct: 642 PMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVT 701
Query: 560 LIRDIMREKHVGKLPGCSWADGIAFNCWFL 589
IR +MR K V K PGCSW +GI F
Sbjct: 702 RIRSLMRHKGVKKRPGCSWVEGIKGTTTFF 731
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 50/364 (13%)
Query: 175 SALISGYANCGKMNDARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 232
S LIS Y + G ++ A + R +D WNS+I Y N + L LF M
Sbjct: 63 SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLS 122
Query: 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292
D T V AC + + G+ H + G I +V V +AL+ YS+ SDA
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDAR 182
Query: 293 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 352
K+F E+ V+D + N++I Y+ G+ P
Sbjct: 183 KVFDEMSVWDVVSWNSIIESYAKLGK-------------------------------PKV 211
Query: 353 ALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411
AL++F M N+ R D +L +V+ CA++ + LG+Q+ + + + LV
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLV 271
Query: 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469
D Y KCG +A +F+ N VK ++++ A+++ G ++ + F+ M+ + I
Sbjct: 272 DMYAKCGMMDEANTVFS---NMSVK-DVVSWNAMVAGYSQIGRFEDAVRLFEKMQ-EEKI 326
Query: 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQM------PFEADVGMWSSILRGCVAHGDKGL 523
++ +S + +A+ G EA+ + QM P E + S+L GC + G
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL---ISVLSGCASVGALMH 383
Query: 524 GRKV 527
G+++
Sbjct: 384 GKEI 387
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 182/607 (29%), Positives = 307/607 (50%), Gaps = 78/607 (12%)
Query: 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
+S + N + YMR G +AL +F MPR + S+N MI G+++ G E + +LF+
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 98 MPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
MP+++ SWN++I G+ + GK ++ D S +++++ Y + G +
Sbjct: 121 MPERDLVSWNVMIKGYVRNR----NLGKARELFEIMPERDVCSW--NTMLSGYAQNGCVD 174
Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
A V + M E +D +AL+S Y KM +A +F + + V WN ++ G++ +
Sbjct: 175 DARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKK 234
Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
EA F M + D + ++++ + G ++ +Q+ + + DV +A
Sbjct: 235 IVEARQFFDSMN----VRDVVSWNTIITGYAQSGKIDEARQLFDES----PVQDVFTWTA 286
Query: 278 LLDTYSKRGMPSDACKLFSEL-------------------------KVYDTI------LL 306
++ Y + M +A +LF ++ +++D +
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW 346
Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
NTMIT Y+ CG+I +AK++F MP + +SW +MI G SQ+G EAL LF M + R
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406
Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
+++ S +S +S CA++ +LELG+Q+ R+ G ++ + +L+ YCKCG
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466
Query: 419 ------------------YD-------ALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
Y AL F M+ G+KP T A+LSAC H GLV
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526
Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
+G+++F M Y + P +HY+CMVDL RAG L +A NL++ MPFE D +W ++L
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLG 586
Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
HG+ L A+++ ++PEN+ Y+ LS+++A+SG W +R MR+K V K+
Sbjct: 587 ASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKV 646
Query: 574 PGCSWAD 580
PG SW +
Sbjct: 647 PGYSWIE 653
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 9/165 (5%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L +C ++ +GKQLH +K G + N LL MY +CG+ +A LF EM ++
Sbjct: 416 LSTCADVVALELGKQLHGRLVKGGYETGCF-VGNALLLMYCKCGSIEEANDLFKEMAGKD 474
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQ- 126
SWN MI G+ + G E +L+ F M ++ +D + ++S + L ++ G+Q
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL--VDKGRQY 532
Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPD 170
++ G+ +S + +V+L G+ G A+ ++ NM EPD
Sbjct: 533 FYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPD 577
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 308 bits (789), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 183/596 (30%), Positives = 297/596 (49%), Gaps = 44/596 (7%)
Query: 26 QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
Q H LK G N I+ +L+ Y DA L+ +P +S++++I K
Sbjct: 36 QAHARILKSGAQNDGY-ISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94
Query: 86 GHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIHSHILVNGLDFDSVLG 143
+S+ +F+ M + ++ K A+L+A + GKQIH V+GLD D+ +
Sbjct: 95 KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154
Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----D 199
S+ ++Y +CG A +V + M + D SAL+ YA G + + R+ +
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
+ V WN ++SG+ + EA+++F K+ G D T++SVL + L G+ +
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319
HG+ K G++ D V SA++D Y K G LF++ ++ + + N IT S G +
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 320 EDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
+ A +F +++ +SW S+I G +QNG IEAL+LF M ++ + ++ S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394
Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------- 419
+ AC NI++L G + L + + ++L+D Y KCG
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454
Query: 420 -----------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462
+ +++F + T +KP I+FT++LSAC GL EG K+F
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514
Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
M +Y I P +EHYSCMV+L RAG L EA +LI++MPFE D +W ++L C +
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574
Query: 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
L AE++ L+PEN Y+ LS+I+A G W + IR+ M + K PGCSW
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 302 bits (774), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 186/605 (30%), Positives = 296/605 (48%), Gaps = 98/605 (16%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL+ C + VGK++H +K G + L L MY +C +A +FD MP R
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSG-FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER 199
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGF-AKADLAALEYGKQIH 128
+ SWN ++ G+ + G +L++ M ++N S+ ++S A + L + GK+IH
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIH 259
Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
+ + +G D SLVN+ +AL+ YA CG +
Sbjct: 260 GYAMRSGFD-------SLVNIS------------------------TALVDMYAKCGSLE 288
Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
AR++FD + + V WNSMI Y+ N EA+L+F KM GV ++ L AC+
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348
Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
LG LE G+ +H + ++G+ +V V +N+
Sbjct: 349 DLGDLERGRFIHKLSVELGLDRNVSV-------------------------------VNS 377
Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
+I++Y C ++ A +F + +++L+SWN+MI+G +QNG PI+AL+ F M ++ D
Sbjct: 378 LISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPD 437
Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------YD 420
F+ SVI+A A +S + + V LD + ++T+LVD Y KCG +D
Sbjct: 438 TFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFD 497
Query: 421 -------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
AL LF EM+ +KP +TF +++SAC H GLV+
Sbjct: 498 MMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEA 557
Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
G K F MK Y I+ ++HY MVDL RAG LNEA + I QMP + V ++ ++L C
Sbjct: 558 GLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617
Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
H + K AER+ EL+P++ ++ L++I+ + WEK +R M + + K PG
Sbjct: 618 QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677
Query: 576 CSWAD 580
CS +
Sbjct: 678 CSMVE 682
Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 147/604 (24%), Positives = 259/604 (42%), Gaps = 118/604 (19%)
Query: 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
A LL+ C++ + +Q+ K G+ +L+ ++ R G+ +A +F+ +
Sbjct: 41 ALLLERCSSLKEL---RQILPLVFKNGLYQEHF-FQTKLVSLFCRYGSVDEAARVFEPID 96
Query: 69 RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALE 122
+ ++ M++GF K+ +K+LQ F +V P +F++ + + G D A L
Sbjct: 97 SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCG----DEAELR 152
Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
GK+IH ++ +G D + L N+Y KC N A +V + M E D L+S
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD------LVS--- 203
Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
WN++++GY N AL + M + T+ S
Sbjct: 204 ----------------------WNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVS 241
Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
VL A S+L + GK++HG+A + G V +++AL+D Y+K
Sbjct: 242 VLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK------------------ 283
Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
CG +E A+ +F M ++++SWNSMI QN +P EA+ +F M
Sbjct: 284 -------------CGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD 330
Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
++ S+ + ACA++ LE G + +GLD + + SL+ YCKC
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390
Query: 418 ---------------------GY-------DALALFNEMRNTGVKPTIITFTAILSACDH 449
G+ DAL F++MR+ VKP T+ ++++A
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450
Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
+ KW + + +D + + +VD++A+ G + A LI M E V W+
Sbjct: 451 LSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWN 508
Query: 510 SILRGCVAHGDKGLGRKVAERMIELD----PENACAYIQLSSIFATSGEWEKSSLIRDIM 565
+++ G +G G G+ E E+ N ++ + S + SG E +M
Sbjct: 509 AMIDG---YGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMM 565
Query: 566 REKH 569
+E +
Sbjct: 566 KENY 569
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 299 bits (765), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 197/662 (29%), Positives = 308/662 (46%), Gaps = 139/662 (20%)
Query: 24 GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
G+QLH +K G L+ + + L+ YM+ N D +FDEM RN +W +I G+
Sbjct: 112 GRQLHCQCIKFGFLDD-VSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYA 170
Query: 84 KLGHKEKSLQLF----NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFD 139
+ ++ L LF N Q N F++ + A+ + G Q+H+ ++ NGLD
Sbjct: 171 RNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGG--RGLQVHTVVVKNGLDKT 228
Query: 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 199
+ +SL+NLY KC G + AR +FD+T
Sbjct: 229 IPVSNSLINLYLKC-------------------------------GNVRKARILFDKTEV 257
Query: 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 259
S V WNSMISGY +N D EAL +F+ MR N V S+ ASV+ C++L L +Q+
Sbjct: 258 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317
Query: 260 HGHACKVGVIDDVIVASALLDTYSK-----------------------RGMPS------- 289
H K G + D + +AL+ YSK M S
Sbjct: 318 HCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDG 377
Query: 290 --DACKLFSELK---------VYDTILL--------------------------NTMITV 312
+A LFSE+K Y IL ++
Sbjct: 378 KEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDA 437
Query: 313 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 372
Y G++E+A +F + +K +++W++M+ G +Q G A+ +F + K ++ ++F+
Sbjct: 438 YVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTF 497
Query: 373 ASVISACANI-SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------- 418
+S+++ CA +S+ G+Q LDS +S++L+ Y K G
Sbjct: 498 SSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR 557
Query: 419 --------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
AL +F EM+ VK +TF + +AC H GLV+EG+K
Sbjct: 558 EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEK 617
Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
+FD M I P EH SCMVDL++RAG L +A+ +IE MP A +W +IL C H
Sbjct: 618 YFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVH 677
Query: 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
LGR AE++I + PE++ AY+ LS+++A SG+W++ + +R +M E++V K PG SW
Sbjct: 678 KKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSW 737
Query: 579 AD 580
+
Sbjct: 738 IE 739
Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 128/519 (24%), Positives = 220/519 (42%), Gaps = 110/519 (21%)
Query: 44 ANRLLQMYMRC-GNPTDALL-----LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-N 96
AN + Q+ + C G + + L LFD+ P R+ S+ +++ GF + G +++ +LF N
Sbjct: 24 ANGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLN 83
Query: 97 VMPQKNDFSWNMLISGF-AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155
+ + ++ S A L +G+Q+H + G D +G+SLV+ Y K +
Sbjct: 84 IHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSN 143
Query: 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 215
F D R+VFD + + V W ++ISGY N
Sbjct: 144 FK-------------------------------DGRKVFDEMKERNVVTWTTLISGYARN 172
Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
+ + E L LF +M+ G ++ T A+ L + G G QVH K G+ + V+
Sbjct: 173 SMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVS 232
Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335
++L++ Y K G A LF + +V + N+MI+ Y++
Sbjct: 233 NSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA-------------------- 272
Query: 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395
NG +EAL +F +M +R+ + S ASVI CAN+ L EQ+ V
Sbjct: 273 -----------NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSV 321
Query: 396 TIIGLDSDQIISTSLVDFYCKC---------------------------GY-------DA 421
G DQ I T+L+ Y KC G+ +A
Sbjct: 322 VKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEA 381
Query: 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481
+ LF+EM+ GV+P T++ IL+A ++ + +K Y + + ++D
Sbjct: 382 VDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVVKTNYERSSTVG--TALLD 436
Query: 482 LFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
+ + G + EA + + + D+ WS++L G G+
Sbjct: 437 AYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAGYAQTGE 474
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 294 bits (753), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 194/608 (31%), Positives = 292/608 (48%), Gaps = 102/608 (16%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL +C H + +G Q H +KK L L + N L+ MY +CG DA +F+ M R
Sbjct: 434 LLSTCAASHDLEMGSQFHSIIIKKK-LAKNLFVGNALVDMYAKCGALEDARQIFERMCDR 492
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
+ +WN +I +++ ++ ++ LF M S ++ KA + L GKQ+H
Sbjct: 493 DNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVH 552
Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
+ GLD D GSSL+++Y K CG +
Sbjct: 553 CLSVKCGLDRDLHTGSSLIDMYSK-------------------------------CGIIK 581
Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
DAR+VF + S V N++I+GY NN + EA++LF +M GV T A+++ AC
Sbjct: 582 DARKVFSSLPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACH 640
Query: 249 SLGFLEHGKQVHGHACKVGVIDD-VIVASALLDTY-SKRGMPSDACKLFSELKVYDTILL 306
L G Q HG K G + + +LL Y + RGM ++AC LFSEL
Sbjct: 641 KPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGM-TEACALFSELS------- 692
Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
KS++ W M+ G SQNG EAL + M +
Sbjct: 693 -----------------------SPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVL 729
Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
D+ + +V+ C+ +SSL G + + + + D D++ S +L+D Y KCG
Sbjct: 730 PDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQV 789
Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
DAL +F+ MR + + P ITF +L+AC H G
Sbjct: 790 FDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGK 849
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
V +G+K F+ M QY I+ ++H +CMVDL R G L EA + IE + D +WSS+L
Sbjct: 850 VSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLL 909
Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
C HGD G AE++IEL+P+N+ AY+ LS+I+A+ G WEK++ +R +MR++ V K
Sbjct: 910 GACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKK 969
Query: 573 LPGCSWAD 580
+PG SW D
Sbjct: 970 VPGYSWID 977
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 139/553 (25%), Positives = 247/553 (44%), Gaps = 110/553 (19%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L + ++ +G +H +K G L S + + + L+ MY +C A +F+ +
Sbjct: 330 LGSVLSAIGIVANLDLGLVVHAEAIKLG-LASNIYVGSSLVSMYSKCEKMEAAAKVFEAL 388
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
+N WNAMI G+ G K ++LF M +DF++ L+S A + LE
Sbjct: 389 EEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASH--DLEM 446
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
G Q HS I+ L + +G++LV++Y KCG A Q
Sbjct: 447 GSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQ---------------------- 484
Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
+F+R D +V WN++I Y+ + ++EA LF +M G++ D + LAS
Sbjct: 485 ---------IFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLAST 535
Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
L AC+ + L GKQVH + K G+ D+ S+L+D YSK G+ DA K+FS L +
Sbjct: 536 LKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSV 595
Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
+ +N +I YS +E+A +F+ M L++ +P E
Sbjct: 596 VSMNALIAGYSQ-NNLEEAVVLFQEM--------------LTRGVNPSE----------- 629
Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ------------------- 404
+ A+++ AC SL LG Q ++T G S+
Sbjct: 630 ------ITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTE 683
Query: 405 --------------IISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACD 448
++ T ++ + + G+ +AL + EMR+ GV P TF +L C
Sbjct: 684 ACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCS 743
Query: 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYS--CMVDLFARAGCLNEAVNLIEQMPFEADVG 506
++EG+ + +H+ +++ + ++D++A+ G + + + ++M ++V
Sbjct: 744 VLSSLREGRAIHSLI---FHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVV 800
Query: 507 MWSSILRGCVAHG 519
W+S++ G +G
Sbjct: 801 SWNSLINGYAKNG 813
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/562 (24%), Positives = 237/562 (42%), Gaps = 112/562 (19%)
Query: 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
++ +GK +H L GI +S + N ++ +Y +C + A FD + ++ +WN+M+
Sbjct: 75 ALRIGKAVHSKSLILGI-DSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSML 132
Query: 80 EGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILV 133
+ +G K L+ F + P N F++++++S A+ +E+G+QIH ++
Sbjct: 133 SMYSSIGKPGKVLRSFVSLFENQIFP--NKFTFSIVLSTCARE--TNVEFGRQIHCSMIK 188
Query: 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG-------- 185
GL+ +S G +LV++Y KC + A +V + +P+ C + L SGY G
Sbjct: 189 MGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLV 248
Query: 186 ---------------------------KMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
K+ DAR +F + V WN MISG+ +
Sbjct: 249 FERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCE 308
Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
T A+ F MR++ V STL SVLSA + L+ G VH A K+G+ ++ V S+L
Sbjct: 309 TVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSL 368
Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
+ YSK A K+F L+ + + N MI
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIR--------------------------- 401
Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
G + NG + ++LF +M +D F+ S++S CA LE+G Q + +
Sbjct: 402 ----GYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK 457
Query: 399 GLDSDQIISTSLVDFYCKCGY---------------------------------DALALF 425
L + + +LVD Y KCG +A LF
Sbjct: 458 KLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLF 517
Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
M G+ + L AC H + +G K + + +D ++ S ++D++++
Sbjct: 518 KRMNLCGIVSDGACLASTLKACTHVHGLYQG-KQVHCLSVKCGLDRDLHTGSSLIDMYSK 576
Query: 486 AGCLNEAVNLIEQMPFEADVGM 507
G + +A + +P + V M
Sbjct: 577 CGIIKDARKVFSSLPEWSVVSM 598
Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 140/583 (24%), Positives = 239/583 (40%), Gaps = 111/583 (19%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+L +C ++ G+Q+H +K G+ ++ L+ MY +C +DA +F+ +
Sbjct: 166 VLSTCARETNVEFGRQIHCSMIKMGLERNSY-CGGALVDMYAKCDRISDARRVFEWIVDP 224
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQ-----------------------------------LF 95
N W + G++K G E+++ LF
Sbjct: 225 NTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLF 284
Query: 96 NVMPQKNDFSWNMLISGFAK--ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153
M + +WN++ISG K + A+EY + + + S LGS L + G
Sbjct: 285 GEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKST---RSTLGSVLSAI-GIV 340
Query: 154 GDFNSA----NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209
+ + + + + + + S+L+S Y+ C KM A +VF+ + + V WN+MI
Sbjct: 341 ANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMI 400
Query: 210 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269
GY N E + + LF M+ +G D T S+LS C++ LE G Q H K +
Sbjct: 401 RGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLA 460
Query: 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 329
++ V +AL+D Y+K G DA ++F M
Sbjct: 461 KNLFVGNALVDMYAKCGALEDARQIFER-------------------------------M 489
Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
++ ++WN++I Q+ + EA DLF MN + D LAS + AC ++ L G+
Sbjct: 490 CDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGK 549
Query: 390 QVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------------------ 419
QV GLD D +SL+D Y KCG
Sbjct: 550 QVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNN 609
Query: 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS 477
+A+ LF EM GV P+ ITF I+ AC + G + F + E E+
Sbjct: 610 LEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQ-FHGQITKRGFSSEGEYLG 668
Query: 478 -CMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
++ ++ + + EA L ++ + +W+ ++ G +G
Sbjct: 669 ISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNG 711
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 124/511 (24%), Positives = 221/511 (43%), Gaps = 119/511 (23%)
Query: 90 KSLQLFNVMPQKNDFSWNMLISGFAKADLA-ALEYGKQIHSHILVNGLDFDSVLGSSLVN 148
KS ++F+ MPQ+ LA AL GK +HS L+ G+D + LG+++V+
Sbjct: 60 KSRKVFDEMPQR----------------LALALRIGKAVHSKSLILGIDSEGRLGNAIVD 103
Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
LY KC + A + + +++ D T WNSM
Sbjct: 104 LYAKCAQVSYAEKQFDFLEK--------------------------DVTA------WNSM 131
Query: 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268
+S Y S + + L F + N + + T + VLS C+ +E G+Q+H K+G+
Sbjct: 132 LSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGL 191
Query: 269 IDDVIVASALLDTYS-------------------------------KRGMPSDACKLFSE 297
+ AL+D Y+ K G+P +A +F
Sbjct: 192 ERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFER 251
Query: 298 LK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
++ D + T+I Y G+++DA+ +F M + +++WN MI G + G A
Sbjct: 252 MRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVA 311
Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
++ F NM K ++ + +L SV+SA +++L+LG V A +GL S+ + +SLV
Sbjct: 312 IEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSM 371
Query: 414 YCKC--------------------------GY-------DALALFNEMRNTGVKPTIITF 440
Y KC GY + LF +M+++G TF
Sbjct: 372 YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTF 431
Query: 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500
T++LS C ++ G + F ++ + + + + +VD++A+ G L +A + E+M
Sbjct: 432 TSLLSTCAASHDLEMGSQ-FHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMC 490
Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
+ D W++I+ V ++ + +RM
Sbjct: 491 -DRDNVTWNTIIGSYVQDENESEAFDLFKRM 520
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 118/260 (45%), Gaps = 43/260 (16%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
A ++++C+ S+ +G Q H K+G + + LL MYM T+A LF E+
Sbjct: 632 FATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSEL 691
Query: 68 PR-RNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKADLAA 120
++ W M+ G + G E++L+ + V+P + F + + L++
Sbjct: 692 SSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSV----LSS 747
Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC-LSALIS 179
L G+ IHS I D D + ++L+++Y KCGD ++QV + M+ + ++LI+
Sbjct: 748 LREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLIN 807
Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
GYA G DA ++FD MR++ ++ D T
Sbjct: 808 GYAKNGYAEDALKIFD-------------------------------SMRQSHIMPDEIT 836
Query: 240 LASVLSACSSLGFLEHGKQV 259
VL+ACS G + G+++
Sbjct: 837 FLGVLTACSHAGKVSDGRKI 856
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 40/261 (15%)
Query: 292 CKLFSELKVYDTI----------------------------LLNTMITVYSSCGRIEDAK 323
CKLF KV+D + L N ++ +Y+ C ++ A+
Sbjct: 56 CKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAE 115
Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
F + K + +WNSM+ S G P + L F ++ + + +KF+ + V+S CA +
Sbjct: 116 KQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARET 174
Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFT 441
++E G Q+ + +GL+ + +LVD Y KC DA +F + V P + +T
Sbjct: 175 NVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWI----VDPNTVCWT 230
Query: 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF 501
+ S GL +E F+ M+ + H P+ + +++ + R G L +A L +M
Sbjct: 231 CLFSGYVKAGLPEEAVLVFERMRDEGH-RPDHLAFVTVINTYIRLGKLKDARLLFGEMS- 288
Query: 502 EADVGMWSSILRGCVAHGDKG 522
DV W+ ++ G HG +G
Sbjct: 289 SPDVVAWNVMISG---HGKRG 306
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 294 bits (752), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 184/607 (30%), Positives = 297/607 (48%), Gaps = 100/607 (16%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
++++C + + +GKQLH +K +S L N L+ MY+R +DA +F +P +
Sbjct: 174 IIKACASSSDVGLGKQLHAQVIKLES-SSHLIAQNALIAMYVRFNQMSDASRVFYGIPMK 232
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL---EYGKQI 127
+ SW+++I GF +LG + ++L M F N I G + ++L +YG QI
Sbjct: 233 DLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQI 292
Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
H + + L +++ G SL ++Y A CG +
Sbjct: 293 HGLCIKSELAGNAIAGCSLCDMY-------------------------------ARCGFL 321
Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
N ARRVFD+ + WN +I+G +N EA+ +F +MR +G + DA +L S+L A
Sbjct: 322 NSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQ 381
Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 307
+ L G Q+H + K G + D+ V N
Sbjct: 382 TKPMALSQGMQIHSYIIKWGFLADLTVC-------------------------------N 410
Query: 308 TMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
+++T+Y+ C + ++F N + +SWN+++ Q+ P+E L LF M +
Sbjct: 411 SLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECE 470
Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
D ++ +++ C ISSL+LG QV GL +Q I L+D Y KCG
Sbjct: 471 PDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRI 530
Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
+AL LF EM++ G++P +TF +L+AC H GLV
Sbjct: 531 FDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLV 590
Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
+EG K + M+ ++ I P EH SC+VDL ARAG LNEA I++M E DV +W ++L
Sbjct: 591 EEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLS 650
Query: 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573
C G+ L +K AE ++++DP N+ A++ L S+ A+SG WE ++L+R M++ V K+
Sbjct: 651 ACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKI 710
Query: 574 PGCSWAD 580
PG SW +
Sbjct: 711 PGQSWIE 717
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 134/563 (23%), Positives = 229/563 (40%), Gaps = 109/563 (19%)
Query: 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
R+ L+ +C++ S+ G+++H H L T+ + N +L MY +CG+ DA +
Sbjct: 66 RLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTI-LNNHILSMYGKCGSLRDAREV 124
Query: 64 FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLA 119
FD MP RN S+ ++I G+ + G ++++L+ M Q+ + F++ +I A +
Sbjct: 125 FDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDV 184
Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
L GKQ+H+ QV+ + +ALI+
Sbjct: 185 GL--GKQLHA-------------------------------QVIKLESSSHLIAQNALIA 211
Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DAS 238
Y +M+DA RVF + W+S+I+G+ + EAL +M GV +
Sbjct: 212 MYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEY 271
Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
S L ACSSL ++G Q+HG K + + I +L D Y++ G + A ++F ++
Sbjct: 272 IFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQI 331
Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
+ DT SWN +I GL+ NG EA+ +F
Sbjct: 332 ERPDT-------------------------------ASWNVIIAGLANNGYADEAVSVFS 360
Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
M D SL S++ A +L G Q+ + + G +D + SL+ Y C
Sbjct: 361 QMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCS 420
Query: 419 --YDALALFNEMRNTG--------------------------------VKPTIITFTAIL 444
Y LF + RN +P IT +L
Sbjct: 421 DLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLL 480
Query: 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD 504
C +K G + + + PE + ++D++A+ G L +A + + M D
Sbjct: 481 RGCVEISSLKLGSQ-VHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMD-NRD 538
Query: 505 VGMWSSILRGCVAHGDKGLGRKV 527
V WS+++ V + G G +
Sbjct: 539 VVSWSTLI---VGYAQSGFGEEA 558
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 143/358 (39%), Gaps = 69/358 (19%)
Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEH 255
T T +M N I+ +N EAL F ++N + T S++ ACSS L
Sbjct: 27 TIKTEELM-NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQ 85
Query: 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315
G+++H H D I+ + +L Y K G DA
Sbjct: 86 GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDA------------------------ 121
Query: 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375
+ +F MP ++L+S+ S+I G SQNG EA+ L+ M + DL D+F+ S+
Sbjct: 122 -------REVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSI 174
Query: 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------- 418
I ACA+ S + LG+Q+ A+V + S I +L+ Y +
Sbjct: 175 IKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDL 234
Query: 419 ----------------YDALALFNEMRNTGV-KPTIITFTAILSACDHCGLVKEGQKWFD 461
++AL+ EM + GV P F + L AC G +
Sbjct: 235 ISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQ-IH 293
Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
+ + + + D++AR G LN A + +Q+ D W+ I+ G +G
Sbjct: 294 GLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIE-RPDTASWNVIIAGLANNG 350
Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 43/188 (22%)
Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
+EA D + +R+ + S+I AC++ SL G ++ D I++++
Sbjct: 51 LEAFDFAQKNSSFKIRLRTY--ISLICACSSSRSLAQGRKIH----------DHILNSN- 97
Query: 411 VDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
C YD TI+ ILS CG +++ ++ FD M +
Sbjct: 98 ------CKYD---------------TILN-NHILSMYGKCGSLRDAREVFDFMP-----E 130
Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE---ADVGMWSSILRGCVAHGDKGLGRKV 527
+ Y+ ++ +++ G EA+ L +M E D + SI++ C + D GLG+++
Sbjct: 131 RNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQL 190
Query: 528 AERMIELD 535
++I+L+
Sbjct: 191 HAQVIKLE 198
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 293 bits (749), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 185/614 (30%), Positives = 294/614 (47%), Gaps = 106/614 (17%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L+ C G Q+H + LK G L +N L+ MY +C P A +FD M
Sbjct: 9 LVSILRVCTRKGLSDQGGQVHCYLLKSGS-GLNLITSNYLIDMYCKCREPLMAYKVFDSM 67
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAAL 121
P RN SW+A++ G + G + SL LF+ M P + FS N+ G L AL
Sbjct: 68 PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGL----LNAL 123
Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
E G QIH L G + +G+SLV++Y KCG N A +
Sbjct: 124 EKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEK-------------------- 163
Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE--DAST 239
VF R D S + WN+MI+G++ ++AL F M+ + E D T
Sbjct: 164 -----------VFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFT 212
Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
L S+L ACSS G + GKQ+HG + G PS A
Sbjct: 213 LTSLLKACSSTGMIYAGKQIHGFLVRSGF-----------------HCPSSA-------- 247
Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359
+ +++ +Y CG + A+ F + K++ISW+S+I+G +Q G +EA+ LF
Sbjct: 248 ----TITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKR 303
Query: 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419
+ +L+ ++D F+L+S+I A+ + L G+Q+ A + + + S+VD Y KCG
Sbjct: 304 LQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGL 363
Query: 420 ---------------------------------DALALFNEMRNTGVKPTIITFTAILSA 446
++ +F EM ++P + + A+LSA
Sbjct: 364 VDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSA 423
Query: 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
C H G++KEG++ F + + I P +EHY+C+VDL RAG L EA +LI+ MP + +VG
Sbjct: 424 CSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVG 483
Query: 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566
+W ++L C HGD LG++V + ++ +D +N Y+ +S+++ +G W + R++
Sbjct: 484 IWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGN 543
Query: 567 EKHVGKLPGCSWAD 580
K + K G SW +
Sbjct: 544 IKGLKKEAGMSWVE 557
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 290 bits (743), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 179/594 (30%), Positives = 293/594 (49%), Gaps = 75/594 (12%)
Query: 25 KQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
KQ H H ++ G + A++L M + A +FDE+P+ N F+WN +I +
Sbjct: 47 KQTHGHMIRTGTFSDPYS-ASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAY 105
Query: 83 MKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
S+ F M + N +++ LI A A++++L G+ +H G+
Sbjct: 106 ASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIK--AAAEVSSLSLGQSLH------GMA 157
Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
S +GS D F ++LI Y +CG ++ A +VF
Sbjct: 158 VKSAVGS-------------------------DVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
+ V WNSMI+G++ +AL LF KM V T+ VLSAC+ + LE G+
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252
Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
QV + + V ++ +A+A+LD Y+K G DA +LF ++ D + TM+ Y+
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312
Query: 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVI 376
E A+ + +MP K +++WN++I QNG P EAL +F + + ++++++ +L S +
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372
Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
SACA + +LELG + + + G+ + ++++L+ Y KCG
Sbjct: 373 SACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVF 432
Query: 419 ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
+A+ +F +M+ VKP +TFT + AC H GLV E + F M
Sbjct: 433 VWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQM 492
Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
+ Y I PE +HY+C+VD+ R+G L +AV IE MP +W ++L C H + L
Sbjct: 493 ESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNL 552
Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577
R++EL+P N A++ LS+I+A G+WE S +R MR + K PGCS
Sbjct: 553 AEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCS 606
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 289 bits (740), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 194/639 (30%), Positives = 310/639 (48%), Gaps = 86/639 (13%)
Query: 15 CNTHHSIHV--GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
CN+ S H G + + + N ++ ++ Y G + A +FDEMP R
Sbjct: 53 CNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVT 112
Query: 73 FSWNAMIEGFMK----LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEYGK 125
S+NAMI +K LG K+ +LF +P+KN S+ +I+GF +A D A Y +
Sbjct: 113 TSYNAMITAMIKNKCDLG---KAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169
Query: 126 QIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
+ F DSV + L++ Y + G +N A +V M + S+++ GY
Sbjct: 170 --------TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKM 221
Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASV 243
G++ DAR +FDR T+ + + W +MI GY + LF +MR+ G V +++TLA +
Sbjct: 222 GRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVM 281
Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
AC G Q+HG ++ + D+ + ++L+ YSK G +A +F +K D+
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341
Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS------------------ 345
+ N++IT +I +A +F MP K ++SW MI G S
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEK 401
Query: 346 -------------QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392
NG EAL F M + ++ + ++ +SV+SA A+++ L G Q+
Sbjct: 402 DNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIH 461
Query: 393 ARVTIIGLDSDQIISTSLVDFYCKCG---------------------------------Y 419
RV + + +D + SLV YCKCG
Sbjct: 462 GRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGK 521
Query: 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM 479
AL LF+ + ++G +P +TF A+LSAC H G V G K+F +MK Y+I+P +HY+CM
Sbjct: 522 KALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACM 581
Query: 480 VDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539
VDL R+G L++A NLI MP + G+W S+L H L A+++IEL+P++A
Sbjct: 582 VDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSA 641
Query: 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
Y+ LS +++ G+ I +I + K + K PG SW
Sbjct: 642 TPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSW 680
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 289 bits (739), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 174/610 (28%), Positives = 285/610 (46%), Gaps = 102/610 (16%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
LA L+ +C+ ++ G+QLH + K G ++ I LL +Y +C + AL F E
Sbjct: 392 LASLVVACSADGTLFRGQQLHAYTTKLGFASNN-KIEGALLNLYAKCADIETALDYFLET 450
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
N WN M+ + L S ++F M + N +++ ++ + L LE
Sbjct: 451 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR--LGDLEL 508
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
G+QIHS I+ ++ + S LI YA
Sbjct: 509 GEQIHSQIIKTNFQLNA-------------------------------YVCSVLIDMYAK 537
Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
GK++ A + R V W +MI+GY N D +AL F +M G+ D L +
Sbjct: 538 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 597
Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
+SAC+ L L+ G+Q+H AC G D +P
Sbjct: 598 VSACAGLQALKEGQQIHAQACVSGFSSD---------------LP--------------- 627
Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
N ++T+YS CG+IE++ F I+WN+++ G Q+G+ EAL +F MN+
Sbjct: 628 -FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686
Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---- 419
+ + F+ S + A + ++++ G+QV A +T G DS+ + +L+ Y KCG
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746
Query: 420 -----------------------------DALALFNEMRNTGVKPTIITFTAILSACDHC 450
+AL F++M ++ V+P +T +LSAC H
Sbjct: 747 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 806
Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
GLV +G +F++M +Y + P+ EHY C+VD+ RAG L+ A I++MP + D +W +
Sbjct: 807 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 866
Query: 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570
+L CV H + +G A ++EL+PE++ Y+ LS+++A S +W+ L R M+EK V
Sbjct: 867 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGV 926
Query: 571 GKLPGCSWAD 580
K PG SW +
Sbjct: 927 KKEPGQSWIE 936
Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 152/588 (25%), Positives = 253/588 (43%), Gaps = 120/588 (20%)
Query: 8 LARLLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
L LL+ C T+ S+ G++LH LK G L+S ++ +L Y+ G+ A +FDE
Sbjct: 87 LKWLLEGCLKTNGSLDEGRKLHSQILKLG-LDSNGCLSEKLFDFYLFKGDLYGAFKVFDE 145
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAA 120
MP R F+WN MI+ + LF NV P + FS + + A
Sbjct: 146 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG---VLEACRGGSVA 202
Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
+ +QIH+ IL GL +V+ + L++LY + G + A +V + +
Sbjct: 203 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL-------------- 248
Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
R D SS W +MISG N + EA+ LF M G++
Sbjct: 249 ---------------RLKDHSS--WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAF 291
Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
+SVLSAC + LE G+Q+HG K+G D V +AL+ Y G A +FS +
Sbjct: 292 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ 351
Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
D + NT+I S CG E +A++LF M
Sbjct: 352 RDAVTYNTLINGLSQCGYGE-------------------------------KAMELFKRM 380
Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
+ L D +LAS++ AC+ +L G+Q+ A T +G S+ I +L++ Y KC
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 440
Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
++ +F +M+ + P T+ +IL C
Sbjct: 441 ETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 500
Query: 448 DHCGLVKEGQKWFDA-MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG 506
G ++ G++ +K + ++ + S ++D++A+ G L+ A +++ + + DV
Sbjct: 501 IRLGDLELGEQIHSQIIKTNFQLNAYV--CSVLIDMYAKLGKLDTAWDILIRFAGK-DVV 557
Query: 507 MWSSILRGCVAHG--DKGLG--RKVAERMIELD------PENACAYIQ 544
W++++ G + DK L R++ +R I D +ACA +Q
Sbjct: 558 SWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 605
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 133/548 (24%), Positives = 240/548 (43%), Gaps = 108/548 (19%)
Query: 23 VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
V +Q+H L +G+ +ST+ + N L+ +Y R G A +FD + ++ SW AMI G
Sbjct: 205 VVEQIHARILYQGLRDSTV-VCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGL 263
Query: 83 MKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136
K + ++++LF +MP FS ++S K + +LE G+Q+H +L G
Sbjct: 264 SKNECEAEAIRLFCDMYVLGIMPTPYAFS--SVLSACKK--IESLEIGEQLHGLVLKLGF 319
Query: 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 196
D+ + ++LV+LY F L LIS A +F
Sbjct: 320 SSDTYVCNALVSLY---------------------FHLGNLIS----------AEHIFSN 348
Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
+ +V +N++I+G +A+ LF +M +G+ D++TLAS++ ACS+ G L G
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408
Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
+Q+H + K+G + + ALL+ Y+K A F E +V + +L N M+ Y
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY--- 465
Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
G ++D ++ FR +F M ++ ++++ S++
Sbjct: 466 GLLDDLRNSFR----------------------------IFRQMQIEEIVPNQYTYPSIL 497
Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
C + LELGEQ+ +++ + + + L+D Y K G
Sbjct: 498 KTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVV 557
Query: 419 -------------YD--ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
+D AL F +M + G++ + T +SAC +KEGQ+ A
Sbjct: 558 SWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQ 616
Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
++ + +V L++R G + E+ EQ ++ W++++ G G+
Sbjct: 617 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA-WNALVSGFQQSGNNEE 675
Query: 524 GRKVAERM 531
+V RM
Sbjct: 676 ALRVFVRM 683
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/561 (29%), Positives = 282/561 (50%), Gaps = 85/561 (15%)
Query: 57 PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--- 113
P DA LFDEMP RN SWN ++ G+MK G +++ ++F++MP++N SW L+ G+
Sbjct: 64 PRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHN 123
Query: 114 AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 173
K D+A + K N + + +L L + G + A ++ M+ + D+
Sbjct: 124 GKVDVAESLFWKMPEK----NKVSWTVMLIGFLQD-----GRIDDACKLYEMIPDKDNIA 174
Query: 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
+++I G G++++AR +FD ++ S + W +M++GY NN
Sbjct: 175 RTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNR---------------- 218
Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
++DA + V+ + + + +++L Y + G DA +
Sbjct: 219 VDDARKIFDVMPEKTEVSW-----------------------TSMLMGYVQNGRIEDAEE 255
Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
LF + V I N MI+ G I A+ +F +M ++ SW ++I +NG +EA
Sbjct: 256 LFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEA 315
Query: 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413
LDLF M K +R +L S++S CA+++SL G+QV A++ D D +++ L+
Sbjct: 316 LDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTM 375
Query: 414 YCKCGY---------------------------------DALALFNEMRNTG-VKPTIIT 439
Y KCG +AL +F EM +G KP +T
Sbjct: 376 YIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVT 435
Query: 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
F A LSAC + G+V+EG K +++M+ + + P HY+CMVD+ RAG NEA+ +I+ M
Sbjct: 436 FVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSM 495
Query: 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559
E D +W S+L C H + A+++IE++PEN+ YI LS+++A+ G W +
Sbjct: 496 TVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVA 555
Query: 560 LIRDIMREKHVGKLPGCSWAD 580
+R +M+ + V K PGCSW +
Sbjct: 556 ELRKLMKTRLVRKSPGCSWTE 576
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 96/180 (53%), Gaps = 10/180 (5%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L C + S+H GKQ+H ++ + + +A+ L+ MY++CG + L+FD
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQ-FDVDVYVASVLMTMYIKCGELVKSKLIFDRF 392
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISGFAKADLAALE 122
P ++ WN++I G+ G E++L++F MP + N+ ++ +S + A + +E
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGM--VE 450
Query: 123 YGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
G +I+ + V G+ + + +V++ G+ G FN A ++++ M EPD +L+
Sbjct: 451 EGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 286 bits (732), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 189/644 (29%), Positives = 311/644 (48%), Gaps = 113/644 (17%)
Query: 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
++C G+ +H + +K G L + +A+ L MY +CG DA +FDE+P RN
Sbjct: 181 KACGALKWSRFGRGVHGYVVKSG-LEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNA 239
Query: 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--FAKADLAALEYGKQIHSH 130
+WNA++ G+++ G E++++LF+ M ++ + +S A A++ +E GKQ H+
Sbjct: 240 VAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAI 299
Query: 131 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190
+VNG++ D++LG+SL+N Y K G A V + M E D + +ISGY G + D
Sbjct: 300 AIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVED- 358
Query: 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250
A+ + MR + D TLA+++SA +
Sbjct: 359 ------------------------------AIYMCQLMRLEKLKYDCVTLATLMSAAART 388
Query: 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
L+ GK+V + + D+++AS ++D Y+K G DA K+F D IL NT++
Sbjct: 389 ENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLL 448
Query: 311 TVYSSC-----------------------------------GRIEDAKHIFRTM------ 329
Y+ G++++AK +F M
Sbjct: 449 AAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGII 508
Query: 330 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 389
PN LISW +M+ G+ QNG EA+ M + LR + FS+ +SACA+++SL +G
Sbjct: 509 PN--LISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGR 566
Query: 390 QVFARVTIIGLDSDQIIS--TSLVDFYCKCG----------------------------- 418
+ + I L ++S TSLVD Y KCG
Sbjct: 567 TIHGYI-IRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYAL 625
Query: 419 ----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
+A+AL+ + G+KP IT T +LSAC+H G + + + F + + + P +E
Sbjct: 626 YGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLE 685
Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
HY MVDL A AG +A+ LIE+MPF+ D M S++ C L ++ +++E
Sbjct: 686 HYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLES 745
Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSW 578
+PEN+ Y+ +S+ +A G W++ +R++M+ K + K PGCSW
Sbjct: 746 EPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSW 789
Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 141/520 (27%), Positives = 250/520 (48%), Gaps = 77/520 (14%)
Query: 9 ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+LQ C + GKQ+H LK G I +L+ Y +C A +LF ++
Sbjct: 74 GEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKL 133
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
RN FSW A+I ++G E +L F M + F N ++ KA L +G+
Sbjct: 134 RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGR 193
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
+H +++ +GL+ + SSL ++YGK CG
Sbjct: 194 GVHGYVVKSGLEDCVFVASSLADMYGK-------------------------------CG 222
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
++DA +VFD D ++V WN+++ GY+ N ++ EA+ LF MR+ GV T+++ LS
Sbjct: 223 VLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLS 282
Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
A +++G +E GKQ H A G+ D I+ ++LL+ Y K G+
Sbjct: 283 ASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGL------------------ 324
Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD- 364
IE A+ +F M K +++WN +I G Q G +A+ C + +L+
Sbjct: 325 -------------IEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAI-YMCQLMRLEK 370
Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDAL 422
L+ D +LA+++SA A +L+LG++V +SD +++++++D Y KCG DA
Sbjct: 371 LKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAK 430
Query: 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482
+F ++ V+ +I + +L+A GL E + F M+ + + P + ++ ++
Sbjct: 431 KVF----DSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLE-GVPPNVITWNLIILS 485
Query: 483 FARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHG 519
R G ++EA ++ QM ++ W++++ G V +G
Sbjct: 486 LLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNG 525
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 142/358 (39%), Gaps = 64/358 (17%)
Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
++ SS + +S N E EAL L +M + +L C L
Sbjct: 28 EQAHSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLS 87
Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
GKQ+H K G D Y++ + + ++ Y+
Sbjct: 88 TGKQIHARILKNG------------DFYAR-----------------NEYIETKLVIFYA 118
Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
C +E A+ +F + +++ SW ++I + G AL F M + ++ D F + +
Sbjct: 119 KCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPN 178
Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--------------- 419
V AC + G V V GL+ +++SL D Y KCG
Sbjct: 179 VCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRN 238
Query: 420 ------------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
+A+ LF++MR GV+PT +T + LSA + G V+EG K
Sbjct: 239 AVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEG-KQSH 297
Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
A+ ++ + + +++ + + G + A + ++M FE DV W+ I+ G V G
Sbjct: 298 AIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRM-FEKDVVTWNLIISGYVQQG 354
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 39/234 (16%)
Query: 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381
+KH + S S+ + L +NG EAL L M+ +LR+ ++ C
Sbjct: 23 SKHHDEQAHSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVY 82
Query: 382 ISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGYDAL----ALFNEM--RNTGV 433
L G+Q+ AR+ G ++ I T LV FY KC DAL LF+++ RN
Sbjct: 83 ERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKC--DALEIAEVLFSKLRVRNVFS 140
Query: 434 KPTIITFTAILSACDHC--GLVK--EGQKWFD------------AMKWQ--------YHI 469
II + C+ G V+ E + + D A+KW Y +
Sbjct: 141 WAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVV 200
Query: 470 DPEIEH----YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
+E S + D++ + G L++A + +++P V W++++ G V +G
Sbjct: 201 KSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVA-WNALMVGYVQNG 253
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L +C S+H+G+ +H + ++ +S + I L+ MY +CG+ A +F
Sbjct: 553 LSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSE 612
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLF 95
NAMI + G+ ++++ L+
Sbjct: 613 LPLSNAMISAYALYGNLKEAIALY 636
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 286 bits (732), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 188/611 (30%), Positives = 303/611 (49%), Gaps = 106/611 (17%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L+ +L +C+ + GKQ+H H L+ G L + N L+ Y++CG A LF+ M
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYG-LEMDASLMNVLIDSYVKCGRVIAAHKLFNGM 310
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KND-FSWNMLISGFAKADLAALEY 123
P +N SW ++ G+ + +++++LF M + K D ++ + +++ + A L AL +
Sbjct: 311 PNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILT--SCASLHALGF 368
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
G Q+H++ + L DS + +SL+++Y A
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMY-------------------------------AK 397
Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYI---SNNEDTEALLLFHKMRRNGVLEDASTL 240
C + DAR+VFD V++N+MI GY + E EAL +F MR + T
Sbjct: 398 CDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTF 457
Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
S+L A +SL L KQ+HG K G+ D+ SAL+D
Sbjct: 458 VSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALID-------------------- 497
Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
VYS+C ++D++ +F M K L+ WNSM G Q EAL+LF +
Sbjct: 498 -----------VYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLEL 546
Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
R D+F+ A++++A N++S++LG++ ++ GL+ + I+ +L+D Y KCG
Sbjct: 547 QLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606
Query: 419 ------YD-------------------------ALALFNEMRNTGVKPTIITFTAILSAC 447
+D AL + +M + G++P ITF +LSAC
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSAC 666
Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
H GLV++G K F+ M ++ I+PE EHY CMV L RAG LN+A LIE+MP + +
Sbjct: 667 SHAGLVEDGLKQFELM-LRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIV 725
Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
W S+L GC G+ L AE I DP+++ ++ LS+I+A+ G W ++ +R+ M+
Sbjct: 726 WRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKV 785
Query: 568 KHVGKLPGCSW 578
+ V K PG SW
Sbjct: 786 EGVVKEPGRSW 796
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/555 (26%), Positives = 257/555 (46%), Gaps = 108/555 (19%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
ARLLQ + +H +H + G+ T ++N L+ +Y R G A +F++M
Sbjct: 47 FARLLQLRASDDLLHYQNVVHGQIIVWGLELDTY-LSNILINLYSRAGGMVYARKVFEKM 105
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKADLAALEYGK- 125
P RN SW+ M+ G E+SL +F + D ++S F +A G+
Sbjct: 106 PERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRW 165
Query: 126 ---QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
Q+ S ++ +G D D +G+ L++ Y K G+
Sbjct: 166 MVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGN--------------------------- 198
Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
++ AR VFD + S+V W +MISG + +L LF+++ + V+ D L++
Sbjct: 199 ----IDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILST 254
Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
VLSACS L FLE GKQ+H H + G+ D + + L+D+Y K
Sbjct: 255 VLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVK------------------ 296
Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
CGR+ A +F MPNK++ISW +++ G QN EA++LF +M+K
Sbjct: 297 -------------CGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSK 343
Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----- 417
L+ D ++ +S++++CA++ +L G QV A L +D ++ SL+D Y KC
Sbjct: 344 FGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTD 403
Query: 418 ---------------------GY----------DALALFNEMRNTGVKPTIITFTAILSA 446
GY +AL +F +MR ++P+++TF ++L A
Sbjct: 404 ARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463
Query: 447 CDHCGLVKEG-QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
L G K + ++Y ++ +I S ++D+++ CL ++ + ++M + D+
Sbjct: 464 S--ASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVK-DL 520
Query: 506 GMWSSILRGCVAHGD 520
+W+S+ G V +
Sbjct: 521 VIWNSMFAGYVQQSE 535
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 286 bits (731), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 165/539 (30%), Positives = 280/539 (51%), Gaps = 42/539 (7%)
Query: 91 SLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 150
S+++ + N FSWN+ I GF++++ + ++ +L +G + L+
Sbjct: 106 SVKILKGIENPNIFSWNVTIRGFSESENPKESF--LLYKQMLRHGCCESRPDHFTYPVLF 163
Query: 151 GKCGDFNSAN-------QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
C D ++ VL + E +A I +A+CG M +AR+VFD + V
Sbjct: 164 KVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLV 223
Query: 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
WN +I+GY E +A+ ++ M GV D T+ ++S+CS LG L GK+ + +
Sbjct: 224 SWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYV 283
Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
+ G+ + + +AL+D +SK G +A ++F L+ + TMI+ Y+ CG ++ ++
Sbjct: 284 KENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSR 343
Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383
+F M K ++ WN+MI G Q +AL LF M + + D+ ++ +SAC+ +
Sbjct: 344 KLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLG 403
Query: 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------- 418
+L++G + + L + + TSLVD Y KCG
Sbjct: 404 ALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIG 463
Query: 419 --------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470
A++ FNEM + G+ P ITF +LSAC H G+++ G+ +F MK +++++
Sbjct: 464 GLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLN 523
Query: 471 PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAER 530
P+++HYS MVDL RAG L EA L+E MP EAD +W ++L GC HG+ LG K A++
Sbjct: 524 PQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKK 583
Query: 531 MIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFL 589
++ELDP ++ Y+ L ++ + WE + R +M E+ V K+PGCS + C F+
Sbjct: 584 LLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFI 642
Score = 99.4 bits (246), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 152/373 (40%), Gaps = 96/373 (25%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
L+ SC+ ++ GK+ + ++K+ L T+P+ N L+ M+ +CG+ +A +FD + +R
Sbjct: 263 LVSSCSMLGDLNRGKEFY-EYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKR 321
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-------------- 116
SW MI G+ + G + S +LF+ M +K+ WN +I G +A
Sbjct: 322 TIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQ 381
Query: 117 -------------------DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
L AL+ G IH +I L + LG+SLV++Y KCG+ +
Sbjct: 382 TSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNIS 441
Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
A V + ++ + +A+I G A G + A F+ D
Sbjct: 442 EALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDA----------------- 484
Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
G+ D T +LSAC G ++ G+
Sbjct: 485 --------------GIAPDEITFIGLLSACCHGGMIQTGR-------------------- 510
Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS- 336
D +S+ L +LK Y + M+ + G +E+A + +MP ++ +
Sbjct: 511 --DYFSQM---KSRFNLNPQLKHY-----SIMVDLLGRAGLLEEADRLMESMPMEADAAV 560
Query: 337 WNSMIVGLSQNGS 349
W +++ G +G+
Sbjct: 561 WGALLFGCRMHGN 573
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 285 bits (730), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 187/608 (30%), Positives = 292/608 (48%), Gaps = 80/608 (13%)
Query: 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
A +L+SC + +G QLH H LK + + L MY +C N DA +LFD
Sbjct: 285 ASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDNSE 343
Query: 69 RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQ 126
N S+NAMI G+ + H K+L LF+ + + +SG A A + L G Q
Sbjct: 344 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 403
Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
I+ + + L D + ++ +++YGK C
Sbjct: 404 IYGLAIKSSLSLDVCVANAAIDMYGK-------------------------------CQA 432
Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
+ +A RVFD +V WN++I+ + N + E L LF M R+ + D T S+L A
Sbjct: 433 LAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKA 492
Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
C+ G L +G ++H K G+ + V +L+D YSK GM +A K+ S +
Sbjct: 493 CTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANV-- 549
Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
G +E+ + + + +SWNS+I G +A LF M ++ +
Sbjct: 550 ---------SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGIT 600
Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 418
DKF+ A+V+ CAN++S LG+Q+ A+V L SD I ++LVD Y KCG
Sbjct: 601 PDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLM 660
Query: 419 -------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453
+A+ LF M +KP +TF +IL AC H GL+
Sbjct: 661 FEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLI 720
Query: 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILR 513
+G ++F MK Y +DP++ HYS MVD+ ++G + A+ LI +MPFEAD +W ++L
Sbjct: 721 DKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 780
Query: 514 GCVAHGDK-GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
C H + + + ++ LDP+++ AY LS+++A +G WEK S +R MR + K
Sbjct: 781 VCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKK 840
Query: 573 LPGCSWAD 580
PGCSW +
Sbjct: 841 EPGCSWVE 848
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 152/595 (25%), Positives = 252/595 (42%), Gaps = 122/595 (20%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+ + C ++ +GKQ H H + G +T + N LLQ+Y + A ++FD+MP R
Sbjct: 54 VFKECAKQGALELGKQAHAHMIISGFRPTTF-VLNCLLQVYTNSRDFVSASMVFDKMPLR 112
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHS- 129
+ SWN MI G+ K K+ FN+MP ++ SWN ++SG+ L+ G+ + S
Sbjct: 113 DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGY-------LQNGESLKSI 165
Query: 130 HILVN----GLDFDSVLGSSLVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALISGY 181
+ V+ G++FD + ++ + D + Q V+ + + D SAL+ Y
Sbjct: 166 EVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMY 225
Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
A + ++ RVF + +SV W+++I+G + NN + AL F +M++ S A
Sbjct: 226 AKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYA 285
Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
SVL +C++L L G Q+H HA K D IV +A LD Y+K
Sbjct: 286 SVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK----------------- 328
Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
C ++DA+ +F N + S+N+MI G SQ +AL LF +
Sbjct: 329 --------------CDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLM 374
Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---- 417
L D+ SL+ V ACA + L G Q++ L D ++ + +D Y KC
Sbjct: 375 SSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALA 434
Query: 418 -----------------------------GYDALALFNEMRNTGVKPTIITFTAILSACD 448
GY+ L LF M + ++P TF +IL AC
Sbjct: 435 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT 494
Query: 449 ----------HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQ 498
H +VK G ++ ++D++++ G + EA + +
Sbjct: 495 GGSLGYGMEIHSSIVKSGMASNSSVG------------CSLIDMYSKCGMIEEAEKIHSR 542
Query: 499 MPFEADVG-------------------MWSSILRGCVAHGDKGLGRKVAERMIEL 534
A+V W+SI+ G V + + RM+E+
Sbjct: 543 FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEM 597
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 133/579 (22%), Positives = 247/579 (42%), Gaps = 119/579 (20%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
A +L+ C+ +G Q+H ++ G ++ + A+ LL MY + ++L +F +
Sbjct: 183 FAIILKVCSFLEDTSLGMQIHGIVVRVGC-DTDVVAASALLDMYAKGKRFVESLRVFQGI 241
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--ADLAALEYGK 125
P +N SW+A+I G ++ +L+ F M + N + + + A L+ L G
Sbjct: 242 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGG 301
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
Q+H+H L + D ++ ++ +++Y K C
Sbjct: 302 QLHAHALKSDFAADGIVRTATLDMYAK-------------------------------CD 330
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
M DA+ +FD + + + +N+MI+GY +ALLLFH++ +G+ D +L+ V
Sbjct: 331 NMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFR 390
Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
AC+ + L G Q++G A K + DV VA+A +D Y K ++A ++F E++ D
Sbjct: 391 ACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDA-- 448
Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
+SWN++I QNG E L LF +M + +
Sbjct: 449 -----------------------------VSWNAIIAAHEQNGKGYETLFLFVSMLRSRI 479
Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------ 419
D+F+ S++ AC SL G ++ + + G+ S+ + SL+D Y KCG
Sbjct: 480 EPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 538
Query: 420 ------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM---- 463
+ +M N ++ +++ +I+S ++ Q F M
Sbjct: 539 IHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMG 598
Query: 464 ----KWQYH----------------------IDPEIEH--YSC--MVDLFARAGCLNEAV 493
K+ Y I E++ Y C +VD++++ G L+++
Sbjct: 599 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR 658
Query: 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532
+ E+ D W++++ G HG ++ ERMI
Sbjct: 659 LMFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMI 696
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 285 bits (729), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 182/611 (29%), Positives = 300/611 (49%), Gaps = 113/611 (18%)
Query: 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
+S ++ S+H G+QLH LK G + N L+ Y++ A +FDE
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSG-FGERNSVGNSLVAFYLKNQRVDSARKVFDE------ 255
Query: 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132
M +++ SWN +I+G+ LA E G + +L
Sbjct: 256 -------------------------MTERDVISWNSIINGYVSNGLA--EKGLSVFVQML 288
Query: 133 VNGLDFDSVLGSSLVNLYGKCGDFN--------SANQVLNMMKEPDDFCLSALISGYANC 184
V+G++ D +++V+++ C D + V D FC + L+ Y+ C
Sbjct: 289 VSGIEIDL---ATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC-NTLLDMYSKC 344
Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
G ++ A+ VF +D S V + SMI+GY EA+ LF +M G+ D T+ +VL
Sbjct: 345 GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 404
Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
+ C+ L+ GK+VH + + D+ V++AL+D
Sbjct: 405 NCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD------------------------ 440
Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
+Y+ CG +++A+ +F M K +ISWN++I G S+N EAL LF N+ +
Sbjct: 441 -------MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF-NLLLEE 492
Query: 365 LRM--DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
R D+ ++A V+ ACA++S+ + G ++ + G SD+ ++ SLVD Y KCG
Sbjct: 493 KRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLL 552
Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
+A+ALFN+MR G++ I+F ++L AC H
Sbjct: 553 AHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSH 612
Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
GLV EG ++F+ M+ + I+P +EHY+C+VD+ AR G L +A IE MP D +W
Sbjct: 613 SGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWG 672
Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
++L GC H D L KVAE++ EL+PEN Y+ +++I+A + +WE+ +R + ++
Sbjct: 673 ALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRG 732
Query: 570 VGKLPGCSWAD 580
+ K PGCSW +
Sbjct: 733 LRKNPGCSWIE 743
Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 123/490 (25%), Positives = 214/490 (43%), Gaps = 84/490 (17%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ + C I +G+ +H K + N LL MY +CG+ A +F EM
Sbjct: 299 IVSVFAGCADSRLISLGRAVH-SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 357
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
R+ S+ +MI G+ + G ++++LF M ++ + ++ +++ A+ L L+
Sbjct: 358 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL--LDE 415
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
GK++H I N L FD + ++L+++Y KCG A V + M+ D +IS
Sbjct: 416 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKD------IIS---- 465
Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLAS 242
WN++I GY N EAL LF+ + D T+A
Sbjct: 466 ---------------------WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 504
Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
VL AC+SL + G+++HG+ + G D VA++L+D Y+K
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK------------------ 546
Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
CG + A +F + +K L+SW MI G +G EA+ LF M +
Sbjct: 547 -------------CGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQ 593
Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKC 417
+ D+ S S++ AC++ ++ G + F I +I T +VD +
Sbjct: 594 AGIEADEISFVSLLYACSHSGLVDEGWRFFN----IMRHECKIEPTVEHYACIVDMLART 649
Query: 418 GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHY 476
G D + + + N + P + A+L C VK +K + + + ++PE +Y
Sbjct: 650 G-DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKV---FELEPENTGYY 705
Query: 477 SCMVDLFARA 486
M +++A A
Sbjct: 706 VLMANIYAEA 715
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 120/467 (25%), Positives = 213/467 (45%), Gaps = 55/467 (11%)
Query: 58 TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK-A 116
D++ FD R+ N + F + G+ E +++L V K D L S A
Sbjct: 51 VDSITTFD----RSVTDANTQLRRFCESGNLENAVKLLCV-SGKWDIDPRTLCSVLQLCA 105
Query: 117 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 176
D +L+ GK++ + I NG DS LGS L ++M
Sbjct: 106 DSKSLKDGKEVDNFIRGNGFVIDSNLGSKL-----------------SLM---------- 138
Query: 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236
Y NCG + +A RVFD ++ WN +++ + + + ++ LF KM +GV D
Sbjct: 139 ----YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMD 194
Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
+ T + V + SSL + G+Q+HG K G + V ++L+ Y K A K+F
Sbjct: 195 SYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFD 254
Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
E+ D I N++I Y S G E +F M + + IV + + + L
Sbjct: 255 EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISL 314
Query: 357 FCNMNKLDL-----RMDKF--SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
++ + + R D+F +L + S C ++ S + VF ++ D + TS
Sbjct: 315 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS---AKAVFREMS----DRSVVSYTS 367
Query: 410 LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
++ Y + G +A+ LF EM G+ P + T TA+L+ C L+ EG++ + +K +
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK-EN 426
Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
+ +I + ++D++A+ G + EA + +M + D+ W++I+ G
Sbjct: 427 DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 285 bits (728), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 178/596 (29%), Positives = 289/596 (48%), Gaps = 103/596 (17%)
Query: 23 VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
+G+ +H +K G + + +A+ L+ MY + ++L +FDEMP R+ SWN +I F
Sbjct: 125 LGRMIHTLVVKSGYVCDVV-VASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCF 183
Query: 83 MKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
+ G EK+L+LF M + N S + IS ++ L LE GK+IH + G +
Sbjct: 184 YQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSR--LLWLERGKEIHRKCVKKGFEL 241
Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198
D + S+LV++YGKC CL AR VF +
Sbjct: 242 DEYVNSALVDMYGKCD------------------CLEV-------------AREVFQKMP 270
Query: 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
S V WNSMI GY++ + + + ++M G +TL S+L ACS L HGK
Sbjct: 271 RKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKF 330
Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
+HG+ + V D+ V +L+D Y K CG
Sbjct: 331 IHGYVIRSVVNADIYVNCSLIDLYFK-------------------------------CGE 359
Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
A+ +F SWN MI G+ +A++++ M + ++ D + SV+ A
Sbjct: 360 ANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPA 419
Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------------------- 418
C+ +++LE G+Q+ ++ L++D+++ ++L+D Y KCG
Sbjct: 420 CSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSW 479
Query: 419 -------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
+AL F+EM+ G+KP +T A+LSAC H GL+ EG K+F M+
Sbjct: 480 TVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRS 539
Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEAD-VGMWSSILRGCVAHGDKGLG 524
+Y I+P IEHYSCM+D+ RAG L EA +I+Q P +D + S++ C H + LG
Sbjct: 540 KYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLG 599
Query: 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
++A ++E P++A Y+ L +++A+ W+ + +R M+E + K PGCSW +
Sbjct: 600 DRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIE 655
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 124/526 (23%), Positives = 232/526 (44%), Gaps = 86/526 (16%)
Query: 44 ANRLLQMYMRCGNPTDALLLFDEMP--------RRNCFSWNAMIEGFMKLGHKEKSLQLF 95
+++LL + C N T +L + RR+ ++I + + +F
Sbjct: 3 SSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVF 62
Query: 96 NVMPQKND-FSWNMLISGFAKADL--AALEYGKQ-IHSHILVNGLDFDSVLGSSLVNLYG 151
++D + WN L+SG++K + LE K+ ++ I V DS +++ YG
Sbjct: 63 ENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVP----DSFTFPNVIKAYG 118
Query: 152 KCGDFNSANQVLNMMKEPDDFC----LSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 207
G + ++ + C S+L+ YA ++ +VFD + WN+
Sbjct: 119 ALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNT 178
Query: 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267
+IS + + E +AL LF +M +G ++ +L +SACS L +LE GK++H K G
Sbjct: 179 VISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKG 238
Query: 268 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327
D V SAL+D Y K C +E A+ +F+
Sbjct: 239 FELDEYVNSALVDMYGK-------------------------------CDCLEVAREVFQ 267
Query: 328 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 387
MP KSL++WNSMI G G +++ M R + +L S++ AC+ +L
Sbjct: 268 KMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLH 327
Query: 388 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG----------------------------- 418
G+ + V +++D ++ SL+D Y KCG
Sbjct: 328 GKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYIS 387
Query: 419 ----YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
+ A+ ++++M + GVKP ++TFT++L AC +++G++ ++ + ++ +
Sbjct: 388 VGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSIS-ESRLETDEL 446
Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
S ++D++++ G EA + +P + DV W+ ++ +HG
Sbjct: 447 LLSALLDMYSKCGNEKEAFRIFNSIP-KKDVVSWTVMISAYGSHGQ 491
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 105/445 (23%), Positives = 184/445 (41%), Gaps = 99/445 (22%)
Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
K +H IL GL D VL SL+N+Y C D SA V
Sbjct: 24 KLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFEN------------------- 64
Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASV 243
FD +D +WNS++SGY N+ + L +F ++ + + D+ T +V
Sbjct: 65 ---------FDIRSDV--YIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNV 113
Query: 244 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303
+ A +LG G+ +H K G + DV+VAS+L+ Y+K + ++ ++F E+ D
Sbjct: 114 IKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDV 173
Query: 304 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 363
NT+I+ + Q+G +AL+LF M
Sbjct: 174 ASWNTVISCF-------------------------------YQSGEAEKALELFGRMESS 202
Query: 364 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------ 417
+ SL ISAC+ + LE G+++ + G + D+ ++++LVD Y KC
Sbjct: 203 GFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVA 262
Query: 418 --------------------GYDA-------LALFNEMRNTGVKPTIITFTAILSACDHC 450
GY A + + N M G +P+ T T+IL AC
Sbjct: 263 REVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRS 322
Query: 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVG-MWS 509
+ G K+ + ++ +I ++DL+ + G N A + + + DV W+
Sbjct: 323 RNLLHG-KFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKT--QKDVAESWN 379
Query: 510 SILRGCVAHGDKGLGRKVAERMIEL 534
++ ++ G+ +V ++M+ +
Sbjct: 380 VMISSYISVGNWFKAVEVYDQMVSV 404
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840
OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
Length = 706
Score = 285 bits (728), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/605 (29%), Positives = 296/605 (48%), Gaps = 98/605 (16%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L+ +L++C +I G+ LH + +K +L S++ + + LL MY R G + +F EM
Sbjct: 111 LSVVLKACGQSSNIAYGESLHAYAVKTSLL-SSVYVGSSLLDMYKRVGKIDKSCRVFSEM 169
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--WNMLISGFAKADLAALEYGK 125
P RN +W A+I G + G ++ L F+ M + + S + I+ A A L ++YGK
Sbjct: 170 PFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGK 229
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
IH+H++V G + +SL +Y +CG+ D CL
Sbjct: 230 AIHTHVIVRGFVTTLCVANSLATMYTECGEMQ------------DGLCL----------- 266
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
F+ ++ V W S+I Y ++ +A+ F KMR + V + T AS+ S
Sbjct: 267 --------FENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFS 318
Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
AC+SL L G+Q+H + +G+ D + V+++++ YS
Sbjct: 319 ACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYS---------------------- 356
Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
+CG + A +F+ M + +ISW+++I G Q G E F M +
Sbjct: 357 ---------TCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGT 407
Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
+ F+LAS++S N++ +E G QV A GL+ + + +SL++ Y KCG
Sbjct: 408 KPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASM 467
Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
+A+ LF + G +P +TF ++L+AC H G
Sbjct: 468 IFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQ 527
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
+ G +F+ M+ Y++ P EHY CMVDL RAG L++A +I +M ++ D +W+++L
Sbjct: 528 LDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLL 587
Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
C A GD GR+ AER++ELDP A A + L++I++++G E+++ +R M+ K V K
Sbjct: 588 IACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIK 647
Query: 573 LPGCS 577
PG S
Sbjct: 648 EPGWS 652
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 116/541 (21%), Positives = 230/541 (42%), Gaps = 118/541 (21%)
Query: 29 LHFLKKGILNSTLPIANRL---------LQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
+ L+K + + + I+N++ L+ + GN A +FD+MP + SW ++I
Sbjct: 19 ISLLQKPVEENIVRISNQVMVKFDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSII 78
Query: 80 EGFMKLGHKEKSLQLFNVM--------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHI 131
+ ++ + +++L LF+ M P + S + G + + + YG+ +H++
Sbjct: 79 KRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQS----SNIAYGESLHAYA 134
Query: 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 191
+ L +GSSL+++Y + G K++ +
Sbjct: 135 VKTSLLSSVYVGSSLLDMYKRVG-------------------------------KIDKSC 163
Query: 192 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
RVF ++V W ++I+G + E L F +M R+ L D T A L AC+ L
Sbjct: 164 RVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLR 223
Query: 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311
+++GK +H H G + + VA++L T
Sbjct: 224 QVKYGKAIHTHVIVRGFVTTLCVANSL-------------------------------AT 252
Query: 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371
+Y+ CG ++D +F M + ++SW S+IV + G ++A++ F M + ++ +
Sbjct: 253 MYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQT 312
Query: 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-------------- 417
AS+ SACA++S L GEQ+ V +GL+ +S S++ Y C
Sbjct: 313 FASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMR 372
Query: 418 -------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458
G + F+ MR +G KPT ++LS + ++ EG +
Sbjct: 373 CRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVI-EGGR 431
Query: 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAH 518
A+ + ++ S +++++++ G + EA + + + D+ ++++ G H
Sbjct: 432 QVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRD-DIVSLTAMINGYAEH 490
Query: 519 G 519
G
Sbjct: 491 G 491
Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 174/402 (43%), Gaps = 76/402 (18%)
Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
+NQV M+K + L +LI N G + AR+VFD+ V W S+I Y++ N
Sbjct: 34 SNQV--MVKFDPNSHLRSLI----NAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNS 87
Query: 219 TEALLLFHKMR--RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
EAL+LF MR + V D S L+ VL AC + +G+ +H +A K ++ V V S
Sbjct: 88 DEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGS 147
Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
+LLD Y + G +C++FSE MP ++ ++
Sbjct: 148 SLLDMYKRVGKIDKSCRVFSE-------------------------------MPFRNAVT 176
Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
W ++I GL G E L F M++ + D ++ A + ACA + ++ G+ + V
Sbjct: 177 WTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVI 236
Query: 397 IIGLDSDQIISTSLVDFYCKCG--YDALALFN---------------------------- 426
+ G + ++ SL Y +CG D L LF
Sbjct: 237 VRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVE 296
Query: 427 ---EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
+MRN+ V P TF ++ SAC + G++ ++ + + M+ ++
Sbjct: 297 TFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQ-LHCNVLSLGLNDSLSVSNSMMKMY 355
Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRG-CVA-HGDKGL 523
+ G L A L + M D+ WS+I+ G C A G++G
Sbjct: 356 STCGNLVSASVLFQGMRCR-DIISWSTIIGGYCQAGFGEEGF 396
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 170/380 (44%), Gaps = 81/380 (21%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
A + +C + + G+QLH + L G LN +L ++N +++MY CGN A +LF M
Sbjct: 313 FASMFSACASLSRLVWGEQLHCNVLSLG-LNDSLSVSNSMMKMYSTCGNLVSASVLFQGM 371
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
R+ SW+ +I G+ + G E+ + F+ M Q DF+ L+S ++A +E
Sbjct: 372 RCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLS--VSGNMAVIEG 429
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
G+Q+H+ L GL+ +S + SSL+N+Y KCG A+ + D L+A+I+GYA
Sbjct: 430 GRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAE 489
Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 243
GK EA+ LF K + G D+ T SV
Sbjct: 490 HGK-------------------------------SKEAIDLFEKSLKVGFRPDSVTFISV 518
Query: 244 LSACSSLGFLEHG----------------KQVHGHA----CKVGVI-------------- 269
L+AC+ G L+ G K+ +G C+ G +
Sbjct: 519 LTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKK 578
Query: 270 DDVIVASALLDTYSK----RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
DDV+ + L+ +K RG A + EL L T+ +YSS G +E+A ++
Sbjct: 579 DDVVWTTLLIACKAKGDIERG--RRAAERILELDPTCATALVTLANIYSSTGNLEEAANV 636
Query: 326 FRTMPNKSLIS---WNSMIV 342
+ M K +I W+S+ +
Sbjct: 637 RKNMKAKGVIKEPGWSSIKI 656
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 178/612 (29%), Positives = 295/612 (48%), Gaps = 109/612 (17%)
Query: 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG-NPTDALLLFDEM 67
A LLQ+CN S G Q H H +K G L + + N LL +Y + G + +FD
Sbjct: 65 ASLLQTCNKVFSFIHGIQFHAHVVKSG-LETDRNVGNSLLSLYFKLGPGMRETRRVFDGR 123
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
++ SW +M+ G++ K+L++F M N+F+ + + A ++L +
Sbjct: 124 FVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVK--ACSELGEVRL 181
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
G+ H ++ +G +++ + S+L LYG + +EP D
Sbjct: 182 GRCFHGVVITHGFEWNHFISSTLAYLYG-------------VNREPVD------------ 216
Query: 184 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLAS 242
ARRVFD + + W +++S + N+ EAL LF+ M R G++ D ST +
Sbjct: 217 ------ARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGT 270
Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
VL+AC +L L+ GK++HG G+ +V+V S+LLD Y K
Sbjct: 271 VLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGK------------------ 312
Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
CG + +A+ +F M K+ +SW++++ G QNG +A+++F M +
Sbjct: 313 -------------CGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEE 359
Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---- 418
DL + +V+ ACA ++++ LG+++ + G + I+ ++L+D Y K G
Sbjct: 360 KDL----YCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDS 415
Query: 419 -----------------------------YDALALFNEMRNTGVKPTIITFTAILSACDH 449
+A++ FN+M G+KP I+F AIL+AC H
Sbjct: 416 ASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGH 475
Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
G+V EG+ +F M Y I P EHYSCM+DL RAG EA NL+E+ D +W
Sbjct: 476 TGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWG 535
Query: 510 SILRGCVAHGDKG-LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568
+L C A+ D + ++A+RM+EL+P+ +Y+ LS+++ G + IR +M +
Sbjct: 536 VLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRR 595
Query: 569 HVGKLPGCSWAD 580
V K G SW D
Sbjct: 596 GVAKTVGQSWID 607
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 138/351 (39%), Gaps = 66/351 (18%)
Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278
TEA+ + + + + AS+L C+ + HG Q H H K G+ D V ++L
Sbjct: 43 TEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSL 102
Query: 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 338
L Y K G P + + + +F K ISW
Sbjct: 103 LSLYFKLG-PG-----------------------------MRETRRVFDGRFVKDAISWT 132
Query: 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
SM+ G ++AL++F M L ++F+L+S + AC+ + + LG V
Sbjct: 133 SMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITH 192
Query: 399 GLDSDQIISTSLVDFYC--KCGYDALALFNEM---------------------------- 428
G + + IS++L Y + DA +F+EM
Sbjct: 193 GFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLF 252
Query: 429 ----RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
R G+ P TF +L+AC + +K+G++ + I + S ++D++
Sbjct: 253 YAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNVVVESSLLDMYG 311
Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
+ G + EA + M + V WS++L G +G+ ++ M E D
Sbjct: 312 KCGSVREARQVFNGMSKKNSVS-WSALLGGYCQNGEHEKAIEIFREMEEKD 361
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 283 bits (723), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 186/613 (30%), Positives = 302/613 (49%), Gaps = 109/613 (17%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPR 69
++++C+ + VG+ +K G S + + L+ M+++ N +A +FD+M
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKADLAALEYGK 125
N +W MI M++G ++++ F M + + F+ + + S A A+L L GK
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS--ACAELENLSLGK 289
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKC---GDFNSANQVLNMMKEPDDFCLSALISGY- 181
Q+HS + +GL D + SLV++Y KC G + +V + M++ +ALI+GY
Sbjct: 290 QLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYM 347
Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTL 240
NC N TEA+ LF +M G +E + T
Sbjct: 348 KNC-------------------------------NLATEAINLFSEMITQGHVEPNHFTF 376
Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
+S AC +L GKQV G A K G+ + VA
Sbjct: 377 SSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA------------------------- 411
Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
N++I+++ R+EDA+ F ++ K+L+S+N+ + G +N + +A L +
Sbjct: 412 ------NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEI 465
Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
+ +L + F+ AS++S AN+ S+ GEQ+ ++V +GL +Q + +L+ Y KCG
Sbjct: 466 TERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525
Query: 419 -------------------------------YDALALFNEMRNTGVKPTIITFTAILSAC 447
L FN+M GVKP +T+ AILSAC
Sbjct: 526 DTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585
Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
H GLV EG + F++M + I P++EHY+CMVDL RAG L +A I MPF+ADV +
Sbjct: 586 SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLV 645
Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
W + L C H + LG+ A +++ELDP AYIQLS+I+A +G+WE+S+ +R M+E
Sbjct: 646 WRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705
Query: 568 KHVGKLPGCSWAD 580
+++ K GCSW +
Sbjct: 706 RNLVKEGGCSWIE 718
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 120/508 (23%), Positives = 218/508 (42%), Gaps = 92/508 (18%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---GNPTDALLLF 64
L+ + +C ++ +GKQLH ++ G+++ + L+ MY +C G+ D +F
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRKVF 328
Query: 65 DEMPRRNCFSWNAMIEGFMK-LGHKEKSLQLFNVMPQKNDFSWNMLI--SGF-AKADLAA 120
D M + SW A+I G+MK +++ LF+ M + N S F A +L+
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388
Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
GKQ+ GL +S + AN V++M + D
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSV----------------ANSVISMFVKSD---------- 422
Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240
+M DA+R F+ ++ + V +N+ + G N +A L ++ + A T
Sbjct: 423 -----RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTF 477
Query: 241 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 300
AS+LS +++G + G+Q+H K+G+ + V +AL+ YSK
Sbjct: 478 ASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSK---------------- 521
Query: 301 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 360
CG I+ A +F M N+++ISW SMI G +++G I L+ F M
Sbjct: 522 ---------------CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQM 566
Query: 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS------LVDFY 414
+ ++ ++ + +++SAC+++ + G + F + D I +VD
Sbjct: 567 IEEGVKPNEVTYVAILSACSHVGLVSEGWRHFN-----SMYEDHKIKPKMEHYACMVDLL 621
Query: 415 CKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP- 471
C+ G DA N M + ++ + L AC + G+ A + +DP
Sbjct: 622 CRAGLLTDAFEFINTM---PFQADVLVWRTFLGACRVHSNTELGKL---AARKILELDPN 675
Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM 499
E Y + +++A AG E+ + +M
Sbjct: 676 EPAAYIQLSNIYACAGKWEESTEMRRKM 703
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 157/347 (45%), Gaps = 50/347 (14%)
Query: 139 DSVLGSSLVNLYGKCGDFNSAN----QVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
DSV SSL+ + DF +++ EPD ++LIS Y+ G A VF
Sbjct: 61 DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120
Query: 195 D---RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 251
+ R V W++M++ Y +N + +A+ +F + G++ + +V+ ACS+
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSD 180
Query: 252 FLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 310
F+ G+ G K G + DV V +L+D + K G S
Sbjct: 181 FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVK-GENS--------------------- 218
Query: 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370
E+A +F M ++++W MI Q G P EA+ F +M DKF
Sbjct: 219 --------FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKF 270
Query: 371 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA-----LALF 425
+L+SV SACA + +L LG+Q+ + GL D + SLVD Y KC D +F
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVF 328
Query: 426 NEMRNTGVKPTIITFTAILSA-CDHCGLVKEGQKWFDAMKWQYHIDP 471
+ M + +++++TA+++ +C L E F M Q H++P
Sbjct: 329 DRMEDH----SVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEP 371
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 44/248 (17%)
Query: 351 IEALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
+ ALDL M + +R MD + +S++ +C LG+ V AR+ ++ D ++ S
Sbjct: 46 VSALDL---MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNS 102
Query: 410 LVDFYCKCG------------------------------------YDALALFNEMRNTGV 433
L+ Y K G DA+ +F E G+
Sbjct: 103 LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL 162
Query: 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA-GCLNEA 492
P +TA++ AC + V G+ + H + ++ ++D+F + A
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENA 222
Query: 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552
+ ++M E +V W+ ++ C+ G + M+ E+ LSS+F+
Sbjct: 223 YKVFDKMS-ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFES--DKFTLSSVFSAC 279
Query: 553 GEWEKSSL 560
E E SL
Sbjct: 280 AELENLSL 287
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 486 AGCLNEAVNLIEQMPFEA----DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NAC 540
AG L AV+ ++ M + D +SS+L+ C+ D LG+ V R+IE D E ++
Sbjct: 39 AGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV 98
Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIA 583
Y L S+++ SG+ K+ + + MR GK SW+ +A
Sbjct: 99 LYNSLISLYSKSGDSAKAEDVFETMR--RFGKRDVVSWSAMMA 139
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 282 bits (721), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 185/675 (27%), Positives = 313/675 (46%), Gaps = 144/675 (21%)
Query: 11 LLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
+L++C + + VG ++H +K G+ + + I LL MY + GN +DA +FD MP
Sbjct: 106 VLRACAGSREHLSVGGKVHGRIIKGGVDDDAV-IETSLLCMYGQTGNLSDAEKVFDGMPV 164
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEYGK 125
R+ +W+ ++ ++ G K+L++F M + + + ++ G A+L L +
Sbjct: 165 RDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGC--AELGCLRIAR 222
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
+H I D D L +SL+ +Y KCGD S+
Sbjct: 223 SVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSS-------------------------- 256
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
R+F++ ++V W +MIS Y +AL F +M ++G+ + TL SVLS
Sbjct: 257 -----ERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLS 311
Query: 246 ACSSLGFLEHGKQVHGHACK------------------------------VGVIDD--VI 273
+C +G + GK VHG A + + V+ D ++
Sbjct: 312 SCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIV 371
Query: 274 VASALLDTYSKRGMPSDACKLFSEL----------------------------------- 298
++L+ Y+ RGM A LF ++
Sbjct: 372 AWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHV 431
Query: 299 ---KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
V D + N++I +YS G ++ A +F + ++S+++WNSM+ G SQNG+ +EA+
Sbjct: 432 IRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAIS 491
Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
LF M L M++ + +VI AC++I SLE G+ V ++ I GL D T+L+D Y
Sbjct: 492 LFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL-KDLFTDTALIDMYA 550
Query: 416 KCG---------------------------------YDALALFNEMRNTGVKPTIITFTA 442
KCG A++ FN+M +G KP + F
Sbjct: 551 KCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMN 610
Query: 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFE 502
+LSAC H G V+EG+ +F+ MK + + P EH++C +DL +R+G L EA I++MPF
Sbjct: 611 VLSACGHSGSVEEGKYYFNLMK-SFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFL 669
Query: 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562
AD +W S++ GC H + + + + ++ ++ Y LS+I+A GEWE+ +R
Sbjct: 670 ADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLR 729
Query: 563 DIMREKHVGKLPGCS 577
M+ ++ K+PG S
Sbjct: 730 SAMKSSNLKKVPGYS 744
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 141/595 (23%), Positives = 255/595 (42%), Gaps = 113/595 (18%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILN-STLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
L +SC+ S+ + QLH H L G L LP+ +L++ Y G+P + L+F+ P
Sbjct: 7 LFRSCS---SLRLVSQLHAHLLVTGRLRRDPLPV-TKLIESYAFMGSPDSSRLVFEAFPY 62
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY---GKQ 126
+ F + +I+ + + ++ L++ + + + +A + E+ G +
Sbjct: 63 PDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGK 122
Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
+H I+ G+D D+V+ +SL+ +YG+ G+
Sbjct: 123 VHGRIIKGGVDDDAVIETSLLCMYGQTGN------------------------------- 151
Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
++DA +VFD V W++++S + N E +AL +F M +GV DA T+ SV+
Sbjct: 152 LSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEG 211
Query: 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 306
C+ LG L + VHG + K+F D L
Sbjct: 212 CAELGCLRIARSVHGQITR---------------------------KMFD----LDETLC 240
Query: 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366
N+++T+YS CG + ++ IF + K+ +SW +MI ++ +AL F M K +
Sbjct: 241 NSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIE 300
Query: 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSD-QIISTSLVDFYCKCG------- 418
+ +L SV+S+C I + G+ V LD + + +S +LV+ Y +CG
Sbjct: 301 PNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCET 360
Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
AL LF +M +KP T + +SAC++ GL
Sbjct: 361 VLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGL 420
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
V G K + + E S ++D+++++G ++ A + Q+ + V W+S+L
Sbjct: 421 VPLG-KQIHGHVIRTDVSDEFVQNS-LIDMYSKSGSVDSASTVFNQIKHRS-VVTWNSML 477
Query: 513 RGCVAHGDKGLGRKVAERM----IELDPENACAYIQLSSIFAT--SGEWEKSSLI 561
G +G+ + + M +E++ A IQ S + G+W LI
Sbjct: 478 CGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLI 532
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 281 bits (720), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 178/603 (29%), Positives = 295/603 (48%), Gaps = 69/603 (11%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L +C + G Q+H +K G L + N L+ Y CG A +FDEM RN
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKD-LFVQNSLVHFYAECGELDSARKVFDEMSERN 199
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN---MLISGFAKADLAALEYGKQIH 128
SW +MI G+ + + ++ LF M + + + N M+ A A L LE G++++
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
+ I +G+ E +D +SAL+ Y C ++
Sbjct: 260 AFIRNSGI-------------------------------EVNDLMVSALVDMYMKCNAID 288
Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
A+R+FD ++ + N+M S Y+ EAL +F+ M +GV D ++ S +S+CS
Sbjct: 289 VAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCS 348
Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
L + GK HG+ + G + +AL+D Y K A ++F + + N+
Sbjct: 349 QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 408
Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRM 367
++ Y G ++ A F TMP K+++SWN++I GL Q EA+++FC+M + +
Sbjct: 409 IVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNA 468
Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
D ++ S+ SAC ++ +L+L + ++ + G+ D + T+LVD + +CG
Sbjct: 469 DGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIF 528
Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
A+ LF++M G+KP + F L+AC H GLV+
Sbjct: 529 NSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQ 588
Query: 455 EGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
+G++ F +M + + PE HY CMVDL RAG L EAV LIE MP E + +W+S+L
Sbjct: 589 QGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAA 648
Query: 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574
C G+ + AE++ L PE +Y+ LS+++A++G W + +R M+EK + K P
Sbjct: 649 CRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPP 708
Query: 575 GCS 577
G S
Sbjct: 709 GTS 711
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/509 (24%), Positives = 211/509 (41%), Gaps = 96/509 (18%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L++C T + K H K+G+ N I + + C T L F + N
Sbjct: 39 LKNCKTIDEL---KMFHRSLTKQGLDNDVSTITKLVAR---SCELGTRESLSFAKEVFEN 92
Query: 72 ------CFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKADLA 119
CF +N++I G+ G +++ LF + P K F + + S AK+
Sbjct: 93 SESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGL--SACAKS--R 148
Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
A G QIH I+ G Y K D F ++L+
Sbjct: 149 AKGNGIQIHGLIVKMG--------------YAK-----------------DLFVQNSLVH 177
Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDAS 238
YA CG+++ AR+VFD ++ + V W SMI GY + +A+ LF +M R+ V ++
Sbjct: 178 FYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237
Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
T+ V+SAC+ L LE G++V+ G+ + ++ SAL+D Y K
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMK-------------- 283
Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
C I+ AK +F +L N+M + G EAL +F
Sbjct: 284 -----------------CNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFN 326
Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
M +R D+ S+ S IS+C+ + ++ G+ V G +S I +L+D Y KC
Sbjct: 327 LMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCH 386
Query: 419 YD--ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
A +F+ M N T++T+ +I++ G V + F+ M + I +
Sbjct: 387 RQDTAFRIFDRMSN----KTVVTWNSIVAGYVENGEVDAAWETFETMP-----EKNIVSW 437
Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADV 505
+ ++ + EA+ + M + V
Sbjct: 438 NTIISGLVQGSLFEEAIEVFCSMQSQEGV 466
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 172/383 (44%), Gaps = 76/383 (19%)
Query: 190 ARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
A+ VF+ + + M+NS+I GY S+ EA+LLF +M +G+ D T LSAC+
Sbjct: 86 AKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACA 145
Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
+G Q+HG K+G D+ V ++L+ Y++ G A K+F E
Sbjct: 146 KSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDE----------- 194
Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRM 367
M ++++SW SMI G ++ +A+DLF M + ++
Sbjct: 195 --------------------MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTP 234
Query: 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------- 418
+ ++ VISACA + LE GE+V+A + G++ + ++ ++LVD Y KC
Sbjct: 235 NSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLF 294
Query: 419 ------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK 454
+AL +FN M ++GV+P I+ + +S+C +
Sbjct: 295 DEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNIL 354
Query: 455 EGQKWFDAMKWQYHIDPEIEHY----SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510
G+ Y + E + + ++D++ + + A + ++M + V W+S
Sbjct: 355 WGKSCHG-----YVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKT-VVTWNS 408
Query: 511 ILRGCVAHGDKGLGRKVAERMIE 533
I+ G V +G+ + E M E
Sbjct: 409 IVAGYVENGEVDAAWETFETMPE 431
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 281 bits (720), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 182/646 (28%), Positives = 305/646 (47%), Gaps = 141/646 (21%)
Query: 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--- 99
+A+ L++ Y+ G LFD + +++C WN M+ G+ K G + ++ F+VM
Sbjct: 175 VASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQ 234
Query: 100 -QKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158
N +++ ++S A L ++ G Q+H ++V+G+DF+ + +SL+++Y K
Sbjct: 235 ISPNAVTFDCVLSVCASKLL--IDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSK------ 286
Query: 159 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 218
CG+ +DA ++F + +V WN MISGY+ +
Sbjct: 287 -------------------------CGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLM 321
Query: 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK----------VGV 268
E+L F++M +GVL DA T +S+L + S LE+ KQ+H + + +
Sbjct: 322 EESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSAL 381
Query: 269 ID---------------------DVIVASALLDTYSKRGMPSDACKLF------------ 295
ID DV+V +A++ Y G+ D+ ++F
Sbjct: 382 IDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNE 441
Query: 296 ----SELKVYDTILL-----------------------NTMITVYSSCGRIEDAKHIFRT 328
S L V +L +I +Y+ CGR+ A IF
Sbjct: 442 ITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFER 501
Query: 329 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388
+ + ++SWNSMI +Q+ +P A+D+F M + D S+++ +SACAN+ S G
Sbjct: 502 LSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFG 561
Query: 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------------------ 418
+ + + L SD ++L+D Y KCG
Sbjct: 562 KAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNH 621
Query: 419 ---YDALALFNEM-RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474
D+L LF+EM +G++P ITF I+S+C H G V EG ++F +M Y I P+ E
Sbjct: 622 GKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQE 681
Query: 475 HYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534
HY+C+VDLF RAG L EA ++ MPF D G+W ++L C H + L + ++++L
Sbjct: 682 HYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDL 741
Query: 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
DP N+ Y+ +S+ A + EWE + +R +M+E+ V K+PG SW +
Sbjct: 742 DPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIE 787
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 126/538 (23%), Positives = 238/538 (44%), Gaps = 56/538 (10%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-- 65
L+ LLQ+C+ + + GKQ+H + I + R+L MY CG+ +D +F
Sbjct: 38 LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSY-TDERILGMYAMCGSFSDCGKMFYRL 96
Query: 66 EMPRRNCFSWNAMIEGFMKLGHKEKSLQL------FNVMPQKNDFSWNMLISGFAKADLA 119
++ R + WN++I F++ G ++L F V P + F KA +A
Sbjct: 97 DLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPC------LVKACVA 150
Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
+ G+DF L ++ +L C ++F S+LI
Sbjct: 151 LKNF----------KGIDF---LSDTVSSLGMDC----------------NEFVASSLIK 181
Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
Y GK++ ++FDR V+WN M++GY + F MR + + +A T
Sbjct: 182 AYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVT 241
Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
VLS C+S ++ G Q+HG GV + + ++LL YSK G DA KLF +
Sbjct: 242 FDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMS 301
Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALD 355
DT+ N MI+ Y G +E++ F M + + I+++S++ +S+ +
Sbjct: 302 RADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQ 361
Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
+ C + + + +D F +++I A + + + +F++ + D ++ T+++ Y
Sbjct: 362 IHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSV----DVVVFTAMISGYL 417
Query: 416 KCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI 473
G D+L +F + + P IT +IL +K G++ + D
Sbjct: 418 HNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRE-LHGFIIKKGFDNRC 476
Query: 474 EHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
++D++A+ G +N A + E++ + D+ W+S++ C + + +M
Sbjct: 477 NIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDNPSAAIDIFRQM 533
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 49/289 (16%)
Query: 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
++ +G++LH +KKG N I ++ MY +CG A +F+ + +R+ SWN+MI
Sbjct: 456 ALKLGRELHGFIIKKGFDNRC-NIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMI 514
Query: 80 EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AKADLAALEYGKQIHSHILVNGLD 137
+ + ++ +F M + IS A A+L + +GK IH ++ + L
Sbjct: 515 TRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLA 574
Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
D S+L+++Y KCG+ +A V MKE + +++I+ N GK+ D
Sbjct: 575 SDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKD-------- 626
Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHG 256
+L LFH+M ++G+ D T ++S+C +G ++ G
Sbjct: 627 -----------------------SLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEG 663
Query: 257 --------------KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291
Q +AC V + + +T P DA
Sbjct: 664 VRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDA 712
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L +C S GK +H F+ K L S + + L+ MY +CGN A+ +F M +N
Sbjct: 549 LSACANLPSESFGKAIH-GFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKN 607
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSWNMLISGFAKADLAALEYGKQ 126
SWN++I G + SL LF+ M +K + ++ +IS + + ++ G +
Sbjct: 608 IVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIIS--SCCHVGDVDEGVR 665
Query: 127 IHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
+ + G+ + +V+L+G+ G A + + M P D
Sbjct: 666 FFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPD 711
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 188/610 (30%), Positives = 307/610 (50%), Gaps = 81/610 (13%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC----GNPTDALLLFDE 66
LL +C T S+ + +H +K G+ N+ ++ +L++ + G P A+ +F
Sbjct: 39 LLHNCKTLQSLRI---IHAQMIKIGLHNTNYALS-KLIEFCILSPHFEGLPY-AISVFKT 93
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALE 122
+ N WN M G +L+L+ M N +++ ++ AK+ A +
Sbjct: 94 IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSK--AFK 151
Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
G+QIH H+L G D D + +SL+++Y + G A++V + D +ALI GYA
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211
Query: 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
+ G + +A+++FD V WN+MISGY EAL LF M + V D ST+ +
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271
Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
V+SAC+ G +E G+QVH IDD G S+ LK+
Sbjct: 272 VVSACAQSGSIELGRQVHL------WIDD-------------HGFGSN-------LKI-- 303
Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
+N +I +YS CG +E A +F +P K +ISWN++I G + EAL LF M +
Sbjct: 304 ---VNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 363 LDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCG-- 418
+ ++ S++ ACA++ ++++G V+ + G+ + + TSL+D Y KCG
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDI 420
Query: 419 -----------------YDALA--------------LFNEMRNTGVKPTIITFTAILSAC 447
++A+ LF+ MR G++P ITF +LSAC
Sbjct: 421 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480
Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
H G++ G+ F M Y + P++EHY CM+DL +G EA +I M E D +
Sbjct: 481 SHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVI 540
Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
W S+L+ C HG+ LG AE +I+++PEN +Y+ LS+I+A++G W + + R ++ +
Sbjct: 541 WCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLND 600
Query: 568 KHVGKLPGCS 577
K + K+PGCS
Sbjct: 601 KGMKKVPGCS 610
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 40/258 (15%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ ++ +C SI +G+Q+HL G S L I N L+ +Y +CG A LF+ +
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHG-FGSNLKIVNALIDLYSKCGELETACGLFERL 327
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLAALEY 123
P ++ SWN +I G+ + +++L LF M ND + ML A A L A++
Sbjct: 328 PYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT--MLSILPACAHLGAIDI 385
Query: 124 GKQIHSHI--LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 181
G+ IH +I + G+ S L +SL+++Y KCGD +A+QV N + +A+I G+
Sbjct: 386 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445
Query: 182 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
A G+ + + FD LF +MR+ G+ D T
Sbjct: 446 AMHGRADAS---FD----------------------------LFSRMRKIGIQPDDITFV 474
Query: 242 SVLSACSSLGFLEHGKQV 259
+LSACS G L+ G+ +
Sbjct: 475 GLLSACSHSGMLDLGRHI 492
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 193/692 (27%), Positives = 315/692 (45%), Gaps = 154/692 (22%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL++ + +GKQ+H H K G ++ +AN L+ +Y +CG+ +FD + R
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKADLA-ALEYGK 125
N SWN++I E +L+ F M +N F+ +++ + + L GK
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCG---------------DFNSANQVLNMM---- 166
Q+H++ L G + +S + ++LV +YGK G D + N VL+ +
Sbjct: 223 QVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 281
Query: 167 ----------------KEPDDFCLS----------------------------------- 175
EPD+F +S
Sbjct: 282 QLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVG 341
Query: 176 -ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GV 233
AL+ Y NC ++ RRVFD D +WN+MI+GY N D EALLLF M + G+
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGL 401
Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
L +++T+A V+ AC G + +HG K G+ D V
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQ------------------ 443
Query: 294 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353
NT++ +YS G+I+ A IF M ++ L++WN+MI G + +A
Sbjct: 444 -------------NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490
Query: 354 LDLFCNMNKLDLRMDK-----------FSLASVISACANISSLELGEQVFARVTIIGLDS 402
L L M L+ ++ K +L +++ +CA +S+L G+++ A L +
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550
Query: 403 DQIISTSLVDFYCKCG---------------------------------YDALALFNEMR 429
D + ++LVD Y KCG +A+ L M
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610
Query: 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCL 489
GVKP +TF ++ +AC H G+V EG + F MK Y ++P +HY+C+VDL RAG +
Sbjct: 611 VQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRI 670
Query: 490 NEAVNLIEQMPFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548
EA L+ MP + + G WSS+L H + +G A+ +I+L+P A Y+ L++I
Sbjct: 671 KEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANI 730
Query: 549 FATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
++++G W+K++ +R M+E+ V K PGCSW +
Sbjct: 731 YSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 140/347 (40%), Gaps = 70/347 (20%)
Query: 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264
W ++ + +N EA+L + M G+ D ++L A + L +E GKQ+H H
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 265 KVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
K G +D V VA NT++ +Y CG
Sbjct: 125 KFGYGVDSVTVA-------------------------------NTLVNLYRKCGDFGAVY 153
Query: 324 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI- 382
+F + ++ +SWNS+I L AL+ F M ++ F+L SV++AC+N+
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213
Query: 383 --SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------------------- 418
L +G+QV A G + II+T LV Y K G
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272
Query: 419 -----------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
+AL EM GV+P T +++L AC H +++ G++
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332
Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRG 514
+D S +VD++ + + + M F+ +G+W++++ G
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378
>sp|Q9LHN5|PP242_ARATH Putative pentatricopeptide repeat-containing protein At3g18840
OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1
Length = 678
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 193/636 (30%), Positives = 315/636 (49%), Gaps = 91/636 (14%)
Query: 28 HLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
H+ +K G STL +N+L+ +Y + G +A +FDEM RN +SWNA+I ++K
Sbjct: 11 HIRSIKSG---STLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAYVKF 67
Query: 86 GHKEKSLQLFNVMPQKNDF-SWNMLISGFAKAD--------------------------- 117
+ +++ +LF + D ++N L+SGFAK D
Sbjct: 68 NNVKEARELFESDNCERDLITYNTLLSGFAKTDGCESEAIEMFGEMHRKEKDDIWIDDFT 127
Query: 118 ----------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN--M 165
L + YG+Q+H ++ G D SSL+++Y KCG F + N
Sbjct: 128 VTTMVKLSAKLTNVFYGEQLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSC 187
Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLL 224
++ D +A+I+ Y G ++ A VF R + ++ WN++I+GY N + EAL +
Sbjct: 188 VEFVDSVARNAMIAAYCREGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGYEEEALKM 247
Query: 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284
M NG+ D + +VL+ SSL L+ GK+VH K G + V+S ++D Y K
Sbjct: 248 AVSMEENGLKWDEHSFGAVLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCK 307
Query: 285 RG---MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 341
G A L+ +Y ++MI YSS G++ +AK +F ++ K+L+ W +M
Sbjct: 308 CGNMKYAESAHLLYGFGNLYSA---SSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMF 364
Query: 342 VG---LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398
+G L Q S +E F N+ + D + SV+ AC+ + +E G+++
Sbjct: 365 LGYLNLRQPDSVLELARAFI-ANETNTP-DSLVMVSVLGACSLQAYMEPGKEIHGHSLRT 422
Query: 399 GLDSDQIISTSLVDFYCKCG-------------------YDALAL--------------F 425
G+ D+ + T+ VD Y KCG Y+A+ F
Sbjct: 423 GILMDKKLVTAFVDMYSKCGNVEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHF 482
Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
+M G KP ITF A+LSAC H GLV EG+K+F +M Y+I PE HY+CM+DL+ +
Sbjct: 483 EDMTEGGFKPDEITFMALLSACRHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGK 542
Query: 486 AGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544
A L++A+ L+E + E D + + L C + + L ++V E+++ ++ N YIQ
Sbjct: 543 AYRLDKAIELMEGIDQVEKDAVILGAFLNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQ 602
Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
+++ +A+SG W++ IR MR K + GCSWA+
Sbjct: 603 IANAYASSGRWDEMQRIRHQMRGKELEIFSGCSWAN 638
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 111/273 (40%), Gaps = 66/273 (24%)
Query: 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN----------------------- 56
S+ +GK++H LK G ++ +++ ++ +Y +CGN
Sbjct: 275 SLKIGKEVHARVLKNGSYSNKF-VSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSASSMI 333
Query: 57 --------PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN--VMPQKNDFSW 106
+A LFD + +N W AM G++ L + L+L + + N
Sbjct: 334 VGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTPDS 393
Query: 107 NMLISGFAKADLAA-LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 165
+++S L A +E GK+IH H L G+ D L ++ V++Y KCG+ A ++
Sbjct: 394 LVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNVEYAERIF-- 451
Query: 166 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 225
D + + +VM+N+MI+G + + ++ F
Sbjct: 452 -----------------------------DSSFERDTVMYNAMIAGCAHHGHEAKSFQHF 482
Query: 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
M G D T ++LSAC G + G++
Sbjct: 483 EDMTEGGFKPDEITFMALLSACRHRGLVLEGEK 515
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ +L +C+ + GK++H H L+ GIL + + MY +CGN A +FD
Sbjct: 396 MVSVLGACSLQAYMEPGKEIHGHSLRTGILMDK-KLVTAFVDMYSKCGNVEYAERIFDSS 454
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEY 123
R+ +NAMI G GH+ KS Q F M + ++ ++ L+S L LE
Sbjct: 455 FERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGL-VLEG 513
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK--EPDDFCLSALISG 180
K S I + ++ + +++LYGK + A +++ + E D L A ++
Sbjct: 514 EKYFKSMIEAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGIDQVEKDAVILGAFLNA 572
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 279 bits (714), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 180/597 (30%), Positives = 288/597 (48%), Gaps = 109/597 (18%)
Query: 25 KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
KQ+H L G+ S I +L+ G+ T A +FD++PR F WNA+I G+ +
Sbjct: 38 KQIHARLLVLGLQFSGFLI-TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSR 96
Query: 85 LGHKEKSL------QLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138
H + +L QL V P + F++ L+ A + L+ L+ G+ +H+ + G D
Sbjct: 97 NNHFQDALLMYSNMQLARVSP--DSFTFPHLLK--ACSGLSHLQMGRFVHAQVFRLGFDA 152
Query: 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD--R 196
D F + LI+ YA C ++ AR VF+
Sbjct: 153 DV-------------------------------FVQNGLIALYAKCRRLGSARTVFEGLP 181
Query: 197 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256
+ + V W +++S Y N E EAL +F +MR+ V D L SVL+A + L L+ G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316
+ +H K+G+ E++ I LNTM Y+ C
Sbjct: 242 RSIHASVVKMGL----------------------------EIEPDLLISLNTM---YAKC 270
Query: 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376
G++ AK +F M + +LI WN+MI G ++NG EA+D+F M D+R D S+ S I
Sbjct: 271 GQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAI 330
Query: 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------------------ 418
SACA + SLE ++ V D IS++L+D + KCG
Sbjct: 331 SACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVV 390
Query: 419 ---------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463
+A++L+ M GV P +TF +L AC+H G+V+EG +F+ M
Sbjct: 391 VWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM 450
Query: 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGL 523
+ I+P+ +HY+C++DL RAG L++A +I+ MP + V +W ++L C H L
Sbjct: 451 A-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVEL 509
Query: 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
G A+++ +DP N Y+QLS+++A + W++ + +R M+EK + K GCSW +
Sbjct: 510 GEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 38/261 (14%)
Query: 1 MDTRIDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNP 57
MD + D++A +L + + G+ +H +K G+ + L I+ L MY +CG
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS--LNTMYAKCGQV 273
Query: 58 TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF--AK 115
A +LFD+M N WNAMI G+ K G+ +++ +F+ M K+ + I+ A
Sbjct: 274 ATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333
Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
A + +LE + ++ ++ + D + S+L++++ KCG A V + + D S
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393
Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
A+I GY G+ EA+ L+ M R GV
Sbjct: 394 AMIVGYGLHGRAR-------------------------------EAISLYRAMERGGVHP 422
Query: 236 DASTLASVLSACSSLGFLEHG 256
+ T +L AC+ G + G
Sbjct: 423 NDVTFLGLLMACNHSGMVREG 443
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 170/580 (29%), Positives = 299/580 (51%), Gaps = 50/580 (8%)
Query: 47 LLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--- 101
++ Y G+ T A +F++ P R+ +NAMI GF ++ LF M +
Sbjct: 86 MVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145
Query: 102 -NDFSWNMLISGFAKADLAALEYGK--QIHSHILVNGLDFDSVLGSSLVNLYGKCGD--- 155
++F++ +++G A L A + + Q H+ L +G + + + ++LV++Y KC
Sbjct: 146 PDNFTFASVLAGLA---LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPS 202
Query: 156 -FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYI 213
+SA +V + + E D+ + +++GY G + + + D V +N+MISGY+
Sbjct: 203 LLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYV 262
Query: 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 273
+ EAL + +M +G+ D T SV+ AC++ G L+ GKQVH + +
Sbjct: 263 NRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFS-FH 321
Query: 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 333
++L+ Y K G +A +F ++ D + N +++ Y S G I +AK IF+ M K+
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381
Query: 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393
++SW MI GL++NG E L LF M + ++ + I +CA + + G+Q A
Sbjct: 382 ILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHA 441
Query: 394 RVTIIGLDSDQIISTSLVDFYCKCGY---------------------------------D 420
++ IG DS +L+ Y KCG +
Sbjct: 442 QLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAE 501
Query: 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480
A+ ++ EM G++P IT +L+AC H GLV +G+K+FD+M+ Y I P +HY+ ++
Sbjct: 502 AVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLI 561
Query: 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540
DL R+G ++A ++IE +PF+ +W ++L GC HG+ LG A+++ L PE+
Sbjct: 562 DLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDG 621
Query: 541 AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
Y+ LS++ A +G+WE+ + +R +MR++ V K CSW +
Sbjct: 622 TYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIE 661
Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 219/462 (47%), Gaps = 28/462 (6%)
Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
+L+ + +H +I+ G + + + L+++Y K + N A Q+ + + EPD + ++S
Sbjct: 29 SLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88
Query: 180 GYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237
GY G + AR VF++ +VM+N+MI+G+ NN+ A+ LF KM+ G D
Sbjct: 89 GYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDN 148
Query: 238 STLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
T ASVL+ + + E Q H A K G V++AL+ YSK S L S
Sbjct: 149 FTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSK--CASSPSLLHS 206
Query: 297 ELKVYDTIL------LNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGS 349
KV+D IL TM+T Y G + + + M N L+++N+MI G G
Sbjct: 207 ARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGF 266
Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
EAL++ M + +D+F+ SVI ACA L+LG+QV A V + D S
Sbjct: 267 YQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYV-LRREDFSFHFDNS 325
Query: 410 LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
LV Y KCG +A A+F +M ++++ A+LS G + E + F MK
Sbjct: 326 LVSLYYKCGKFDEARAIFEKM----PAKDLVSWNALLSGYVSSGHIGEAKLIFKEMK--- 378
Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLG 524
+ I + M+ A G E + L M FE +S ++ C G G
Sbjct: 379 --EKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436
Query: 525 RKVAERMIELDPENA-CAYIQLSSIFATSGEWEKSSLIRDIM 565
++ +++++ +++ A L +++A G E++ + M
Sbjct: 437 QQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 66/281 (23%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
++++C T + +GKQ+H + L++ + + N L+ +Y +CG +A +F++MP +
Sbjct: 292 VIRACATAGLLQLGKQVHAYVLRRE--DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK 349
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--------------- 115
+ SWNA++ G++ GH ++ +F M +KN SW ++ISG A+
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK 409
Query: 116 ------------------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157
A L A G+Q H+ +L G D G++L+ +Y KCG
Sbjct: 410 REGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVE 469
Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
A QV M CL SV WN++I+ +
Sbjct: 470 EARQVFRTMP-----CL--------------------------DSVSWNALIAALGQHGH 498
Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 258
EA+ ++ +M + G+ D TL +VL+ACS G ++ G++
Sbjct: 499 GAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRK 539
>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720
OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
Length = 894
Score = 276 bits (706), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 213/696 (30%), Positives = 318/696 (45%), Gaps = 127/696 (18%)
Query: 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNST-LPIANRLLQMYMRCGNPTDALL 62
R YL +LL+SC SIH+G+ LH F G+ + + +LL MY +CG DA
Sbjct: 81 RSTYL-KLLESCIDSGSIHLGRILHARF---GLFTEPDVFVETKLLSMYAKCGCIADARK 136
Query: 63 LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADL 118
+FD M RN F+W+AMI + + + +LF +M + +DF + ++ G A+
Sbjct: 137 VFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGC--ANC 194
Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD-------- 170
+E GK IHS ++ G+ + +S++ +Y KCG+ + A + M+E D
Sbjct: 195 GDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVL 254
Query: 171 -DFCLSA--------------------------LISGYANCGKMNDA------RRVFDRT 197
+C + LI GY GK + A F T
Sbjct: 255 LAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGIT 314
Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
D + W +MISG I N +AL +F KM GV+ +A T+ S +SACS L + G
Sbjct: 315 ADVFT--WTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGS 372
Query: 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 317
+VH A K+G IDDV+V ++L+D YSK G DA K+F +K D N+MIT Y G
Sbjct: 373 EVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAG 432
Query: 318 RIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNK----------- 362
A +F M + +L I+WN+MI G +NG EA+DLF M K
Sbjct: 433 YCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATW 492
Query: 363 ----------------LDL-RMDKFS--------LASVISACANISSLELGEQVFARVTI 397
L+L R +FS + S++ ACAN+ ++ ++ V
Sbjct: 493 NLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVLR 552
Query: 398 IGLDSDQIISTSLVDFYCKCG---------------------------------YDALAL 424
LD+ + +L D Y K G ALAL
Sbjct: 553 RNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALAL 612
Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
FN+M+ G+ P T ++I+ A G V EG+K F ++ YHI P +EH S MV L+
Sbjct: 613 FNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYG 672
Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544
RA L EA+ I++M +++ +W S L GC HGD + AE + L+PEN
Sbjct: 673 RANRLEEALQFIQEMNIQSETPIWESFLTGCRIHGDIDMAIHAAENLFSLEPENTATESI 732
Query: 545 LSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
+S I+A + +S R+ + K G SW +
Sbjct: 733 VSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQSWIE 768
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 39/227 (17%)
Query: 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403
L +NGS +EA ++ + ++ + + ++ +C + S+ LG + AR + + D
Sbjct: 56 LCRNGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARFGLF-TEPD 114
Query: 404 QIISTSLVDFYCKCG--YDALALFNEMRNT------------------------------ 431
+ T L+ Y KCG DA +F+ MR
Sbjct: 115 VFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMK 174
Query: 432 -GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
GV P F IL C +CG V+ G K ++ + + + + ++ ++A+ G L+
Sbjct: 175 DGVLPDDFLFPKILQGCANCGDVEAG-KVIHSVVIKLGMSSCLRVSNSILAVYAKCGELD 233
Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537
A +M E DV W+S+L +A+ G + E + E++ E
Sbjct: 234 FATKFFRRMR-ERDVIAWNSVL---LAYCQNGKHEEAVELVKEMEKE 276
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 275 bits (703), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/444 (34%), Positives = 239/444 (53%), Gaps = 33/444 (7%)
Query: 170 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 229
D F + + YA+CG++N AR VFD + V WN+MI Y EA LF +M+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289
+ V+ D L +++SAC G + + + ++ + V D + +AL+ Y+ G
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349
A + F ++ V + + M++ YS CGR++DA+ IF K L+ W +MI ++
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409
P EAL +F M ++ D S+ SVISACAN+ L+ + V + + + GL+S+ I+ +
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNA 384
Query: 410 LVDFYCKCG---------------------------------YDALALFNEMRNTGVKPT 436
L++ Y KCG DAL+LF M+ V+P
Sbjct: 385 LINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPN 444
Query: 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496
+TF +L C H GLV+EG+K F +M +Y+I P++EHY CMVDLF RA L EA+ +I
Sbjct: 445 EVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVI 504
Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556
E MP ++V +W S++ C HG+ LG+ A+R++EL+P++ A + +S+I+A WE
Sbjct: 505 ESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWE 564
Query: 557 KSSLIRDIMREKHVGKLPGCSWAD 580
IR +M EK+V K G S D
Sbjct: 565 DVRNIRRVMEEKNVFKEKGLSRID 588
>sp|Q9SUF9|PP305_ARATH Pentatricopeptide repeat-containing protein At4g08210
OS=Arabidopsis thaliana GN=PCMP-E100 PE=3 SV=1
Length = 686
Score = 275 bits (702), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 183/609 (30%), Positives = 299/609 (49%), Gaps = 78/609 (12%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+L++C I +G ++ K+ L + + N ++ MY++ G +A F E+ R
Sbjct: 113 VLKACGLVGDIQLGILVYERIGKEN-LRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRP 171
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KADLAALEYGKQIHS 129
+ SWN +I G+ K G ++++ LF+ MPQ N SWN LISGF K ALE+ ++
Sbjct: 172 SSTSWNTLISGYCKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKGSPRALEFLVRMQR 231
Query: 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ----VLNMMKEPDDFCLSALISGYANCG 185
GL D + G Q V+ E F +SALI Y+NCG
Sbjct: 232 E----GLVLDGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESSPFAISALIDMYSNCG 287
Query: 186 KMNDARRVFDR---TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
+ A VF + ++S +WNSM+SG++ N E+ AL L ++ ++ + D+ TL+
Sbjct: 288 SLIYAADVFHQEKLAVNSSVAVWNSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSG 347
Query: 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 302
L C + L G QVH G D IV S L+D
Sbjct: 348 ALKICINYVNLRLGLQVHSLVVVSGYELDYIVGSILVD---------------------- 385
Query: 303 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362
++++ G I+DA +F +PNK +I+++ +I G ++G A LF + K
Sbjct: 386 ---------LHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIK 436
Query: 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--- 419
L L D+F +++++ C++++SL G+Q+ G +S+ + +T+LVD Y KCG
Sbjct: 437 LGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDN 496
Query: 420 ------------------------------DALALFNEMRNTGVKPTIITFTAILSACDH 449
+A F++M N G++P +TF +LSAC H
Sbjct: 497 GVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRH 556
Query: 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS 509
GL++E + + MK +Y ++P +EHY C+VDL +AG EA LI +MP E D +W+
Sbjct: 557 SGLLEEARSTLETMKSEYGLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWT 616
Query: 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569
S+L C H + GL +AE++++ P++ Y LS+ +AT G W++ S +R+ + K
Sbjct: 617 SLLTACGTHKNAGLVTVIAEKLLKGFPDDPSVYTSLSNAYATLGMWDQLSKVREAAK-KL 675
Query: 570 VGKLPGCSW 578
K G SW
Sbjct: 676 GAKESGMSW 684
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 161/614 (26%), Positives = 264/614 (42%), Gaps = 87/614 (14%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
MD ++ +A L+ C + G+ + H +K+GI + IAN ++ MY+ +DA
Sbjct: 3 MDLKL--IAAGLRHCGKVQAFKRGESIQAHVIKQGISQNVF-IANNVISMYVDFRLLSDA 59
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAK 115
+FDEM RN +W M+ G+ G K+++L+ M N+F ++ ++ A
Sbjct: 60 HKVFDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLK--AC 117
Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
+ ++ G ++ I L D VL +S+V++Y K G AN + P +
Sbjct: 118 GLVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWN 177
Query: 176 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235
LISGY G M++A +F R + V WN +ISG++ AL +M+R G++
Sbjct: 178 TLISGYCKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKG-SPRALEFLVRMQREGLVL 236
Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
D L L ACS G L GKQ+H K G+ SAL+D
Sbjct: 237 DGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESSPFAISALID--------------- 281
Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIF---RTMPNKSLISWNSMIVGLSQNGSPIE 352
+YS+CG + A +F + N S+ WNSM+ G N
Sbjct: 282 ----------------MYSNCGSLIYAADVFHQEKLAVNSSVAVWNSMLSGFLINEENEA 325
Query: 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412
AL L + + DL D ++L+ + C N +L LG QV + V + G + D I+ + LVD
Sbjct: 326 ALWLLLQIYQSDLCFDSYTLSGALKICINYVNLRLGLQVHSLVVVSGYELDYIVGSILVD 385
Query: 413 FYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCG-----------LVKEGQ-- 457
+ G DA LF+ + N II F+ ++ C G L+K G
Sbjct: 386 LHANVGNIQDAHKLFHRLPN----KDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDA 441
Query: 458 ------------KWFDAMKWQYHI---------DPEIEHYSCMVDLFARAGCLNEAVNLI 496
++ W I + E + +VD++ + G ++ V L
Sbjct: 442 DQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLF 501
Query: 497 EQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEW 555
+ M E DV W+ I+ G +G + +MI + E N ++ L S SG
Sbjct: 502 DGM-LERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLL 560
Query: 556 EKSSLIRDIMREKH 569
E++ + M+ ++
Sbjct: 561 EEARSTLETMKSEY 574
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 20/196 (10%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
++ +L+ C++ S+ GKQ+H +KKG S A L+ MY++CG + ++LFD M
Sbjct: 446 VSNILKVCSSLASLGWGKQIHGLCIKKG-YESEPVTATALVDMYVKCGEIDNGVVLFDGM 504
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWNMLI-----SGFAKADL 118
R+ SW +I GF + G E++ + F N+ + N ++ L+ SG +
Sbjct: 505 LERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLLEEAR 564
Query: 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSAL 177
+ LE K + GL+ +V+L G+ G F AN+++N M EPD ++L
Sbjct: 565 STLETMKSEY------GLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWTSL 618
Query: 178 ISGYANCGKMNDARRV 193
++ CG +A V
Sbjct: 619 LTA---CGTHKNAGLV 631
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 273 bits (697), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 177/613 (28%), Positives = 298/613 (48%), Gaps = 103/613 (16%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+RLL+ + +G+Q+H + KG + + + L+ MY +C DA F E+
Sbjct: 104 FSRLLKGIASVKRFDLGEQVH-GLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEI 162
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-----DLAALE 122
N SWNA+I GF+++ + + L +M K + M FA D
Sbjct: 163 SEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVT--MDAGTFAPLLTLLDDPMFCN 220
Query: 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 182
KQ+H+ +L GL + + +A+IS YA
Sbjct: 221 LLKQVHAKVLKLGLQHEITI-------------------------------CNAMISSYA 249
Query: 183 NCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241
+CG ++DA+RVFD + ++ WNSMI+G+ + A LF +M+R+ V D T
Sbjct: 250 DCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYT 309
Query: 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
+LSACS GK +HG K G+ +AL+ Y + P+
Sbjct: 310 GLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQ--FPT------------ 355
Query: 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361
G +EDA +F ++ +K LISWNS+I G +Q G +A+ F +
Sbjct: 356 ---------------GTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLR 400
Query: 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--- 418
++++D ++ ++++ +C+++++L+LG+Q+ A T G S++ + +SL+ Y KCG
Sbjct: 401 SSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIE 460
Query: 419 -----------------YDA--------------LALFNEMRNTGVKPTIITFTAILSAC 447
++A L LF++M N VK +TFTAIL+AC
Sbjct: 461 SARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTAC 520
Query: 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGM 507
H GL++EG + + M+ Y I P +EHY+ VDL RAG +N+A LIE MP D +
Sbjct: 521 SHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMV 580
Query: 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
+ L C A G+ + +VA ++E++PE+ Y+ LS +++ +WE+ + ++ +M+E
Sbjct: 581 LKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKE 640
Query: 568 KHVGKLPGCSWAD 580
+ V K+PG SW +
Sbjct: 641 RGVKKVPGWSWIE 653
Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 224/532 (42%), Gaps = 105/532 (19%)
Query: 28 HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
H + +K G + S + ++NR+L Y++ G A +LFDEMP+R+ SWN MI G+ G
Sbjct: 23 HCYAIKCGSI-SDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81
Query: 88 KEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLG 143
E + LF M + + +S++ L+ G A + + G+Q+H ++ G + + +G
Sbjct: 82 LEDAWCLFTCMKRSGSDVDGYSFSRLLKGI--ASVKRFDLGEQVHGLVIKGGYECNVYVG 139
Query: 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 203
SSLV++Y KC A + + EP+ SV
Sbjct: 140 SSLVDMYAKCERVEDAFEAFKEISEPN-------------------------------SV 168
Query: 204 MWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262
WN++I+G++ + A L M + V DA T A +L+ F KQVH
Sbjct: 169 SWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAK 228
Query: 263 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 322
K+G+ ++ + +A++ +Y+ G SDA ++F L
Sbjct: 229 VLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLG----------------------- 265
Query: 323 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382
+K LISWNSMI G S++ A +LF M + + D ++ ++SAC+
Sbjct: 266 -------GSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGE 318
Query: 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK-------------------------- 416
G+ + V GL+ + +L+ Y +
Sbjct: 319 EHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNS 378
Query: 417 --CGY-------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
G+ DA+ F+ +R++ +K F+A+L +C ++ GQ+
Sbjct: 379 IITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSG 438
Query: 468 HIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
+ E S ++ ++++ G + A +Q+ + W++++ G HG
Sbjct: 439 FVSNEFV-ISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHG 489
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 157/334 (47%), Gaps = 43/334 (12%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR--CGNPT 58
++T I LL +C+ GK LH +KKG L N L+ MY++ G
Sbjct: 301 VETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKG-LEQVTSATNALISMYIQFPTGTME 359
Query: 59 DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFA 114
DAL LF+ + ++ SWN++I GF + G E +++ F+ + +D++++ L+ +
Sbjct: 360 DALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLR--S 417
Query: 115 KADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 174
+DLA L+ G+QIH+ +G + + SSL+ +Y KCG S
Sbjct: 418 CSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIES---------------- 461
Query: 175 SALISGYANCGKMNDARRVFDR-TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
AR+ F + ++ S+V WN+MI GY + +L LF +M V
Sbjct: 462 ---------------ARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNV 506
Query: 234 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV-ASALLDTYSKRGMPSDAC 292
D T ++L+ACS G ++ G ++ V I + +A +D + G+ + A
Sbjct: 507 KLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAK 566
Query: 293 KLFSELKVY-DTILLNTMITVYSSCGRIEDAKHI 325
+L + + D ++L T + V +CG IE A +
Sbjct: 567 ELIESMPLNPDPMVLKTFLGVCRACGEIEMATQV 600
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 37/190 (19%)
Query: 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318
H +A K G I D+ V++ +LD+Y K G A LF E+ D++ NTMI+ Y+SCG+
Sbjct: 22 THCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81
Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
+EDA +F M ++GS + D +S + ++
Sbjct: 82 LEDAWCLFTCMK---------------RSGSDV----------------DGYSFSRLLKG 110
Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPT 436
A++ +LGEQV V G + + + +SLVD Y KC DA F E+ +P
Sbjct: 111 IASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEIS----EPN 166
Query: 437 IITFTAILSA 446
+++ A+++
Sbjct: 167 SVSWNALIAG 176
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 272 bits (696), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 155/486 (31%), Positives = 251/486 (51%), Gaps = 61/486 (12%)
Query: 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 184
KQIH+ +L GL DS + ++ FC+S+ S +
Sbjct: 31 KQIHARMLKTGLMQDSYAITKFLS-----------------------FCISSTSSDF--- 64
Query: 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244
+ A+ VFD + +WN MI G+ ++E +LLL+ +M + +A T S+L
Sbjct: 65 --LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLL 122
Query: 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
ACS+L E Q+H K+G +DV ++L+++Y+ G A LF + D +
Sbjct: 123 KACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDV 182
Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
N++I Y G+++ A +FR M K+ ISW +MI G Q EAL LF M D
Sbjct: 183 SWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD 242
Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------ 418
+ D SLA+ +SACA + +LE G+ + + + + D ++ L+D Y KCG
Sbjct: 243 VEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEAL 302
Query: 419 ---------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
+A++ F EM+ G+KP +ITFTA+L+AC + G
Sbjct: 303 EVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTG 362
Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
LV+EG+ F +M+ Y++ P IEHY C+VDL RAG L+EA I++MP + + +W ++
Sbjct: 363 LVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGAL 422
Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
L+ C H + LG ++ E +I +DP + Y+ ++I A +W+K++ R +M+E+ V
Sbjct: 423 LKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVA 482
Query: 572 KLPGCS 577
K+PGCS
Sbjct: 483 KVPGCS 488
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 272 bits (695), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 192/668 (28%), Positives = 304/668 (45%), Gaps = 146/668 (21%)
Query: 24 GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
GKQ+H F+ + L++ + L+ MY + G DA +F E+ + N WN MI GF
Sbjct: 189 GKQIH-GFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGF 247
Query: 83 MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE-----YGKQIHSHILVNGLD 137
G E SL L+ M KN+ S ++ + F A A + +G+QIH ++ GL
Sbjct: 248 GGSGICESSLDLY--MLAKNN-SVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGL- 303
Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 197
D + ++L+S Y+ CG + +A VF
Sbjct: 304 ------------------------------HNDPYVCTSLLSMYSKCGMVGEAETVFSCV 333
Query: 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 257
D +WN+M++ Y N+ AL LF MR+ VL D+ TL++V+S CS LG +GK
Sbjct: 334 VDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGK 393
Query: 258 QVHGHACKVGVIDDVIVASALLDTYS-------------------------------KRG 286
VH K + + SALL YS K G
Sbjct: 394 SVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNG 453
Query: 287 MPSDACKLFSELK-----------------------------------------VYDTIL 305
+A K+F ++K V + +
Sbjct: 454 KFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFV 513
Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
+++I +YS CG E A +F +M +++++WNSMI S+N P ++DLF M +
Sbjct: 514 GSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGI 573
Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYD----- 420
D S+ SV+ A ++ +SL G+ + +G+ SD + +L+D Y KCG+
Sbjct: 574 FPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAEN 633
Query: 421 ----------------------------ALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
AL+LF+EM+ G P +TF +++SAC+H G
Sbjct: 634 IFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGF 693
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
V+EG+ F+ MK Y I+P +EHY+ MVDL RAG L EA + I+ MP EAD +W +L
Sbjct: 694 VEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLL 753
Query: 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGK 572
H + LG AE+++ ++PE Y+QL +++ +G +++ + +M+EK + K
Sbjct: 754 SASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHK 813
Query: 573 LPGCSWAD 580
PGCSW +
Sbjct: 814 QPGCSWIE 821
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 128/476 (26%), Positives = 209/476 (43%), Gaps = 81/476 (17%)
Query: 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
T + LL++C+ ++ GK +H + G IA L+ MY++CG A+
Sbjct: 58 TSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPF-IATSLVNMYVKCGFLDYAVQ 116
Query: 63 LFDEMPR-------RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLIS 111
+FD + R+ WN+MI+G+ K ++ + F M + + FS ++++S
Sbjct: 117 VFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVS 176
Query: 112 GFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 171
K E GKQIH +L N LD DS L ++L+++Y K
Sbjct: 177 VMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFK------------------- 217
Query: 172 FCLSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRR 230
F LS DA RVF D S+ V+WN MI G+ + +L L+ +
Sbjct: 218 FGLSI------------DAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKN 265
Query: 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290
N V +++ L ACS G+Q+H K+G+ +D V ++LL YSK GM
Sbjct: 266 NSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGM--- 322
Query: 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350
+ +A+ +F + +K L WN+M+ ++N
Sbjct: 323 ----------------------------VGEAETVFSCVVDKRLEIWNAMVAAYAENDYG 354
Query: 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410
ALDLF M + + D F+L++VIS C+ + G+ V A + + S I ++L
Sbjct: 355 YSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESAL 414
Query: 411 VDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464
+ Y KCG DA +F M + ++ + +++S G KE K F MK
Sbjct: 415 LTLYSKCGCDPDAYLVFKSME----EKDMVAWGSLISGLCKNGKFKEALKVFGDMK 466
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 141/525 (26%), Positives = 213/525 (40%), Gaps = 114/525 (21%)
Query: 74 SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-------AKADLAALEYGKQ 126
S N+ I ++ G ++L L++ K+D S S F A + L L YGK
Sbjct: 26 SINSGIRALIQKGEYLQALHLYS----KHDGSSPFWTSVFTFPSLLKACSALTNLSYGKT 81
Query: 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 186
IH ++V G +D + +SLVN+Y KCG + A QV + G++
Sbjct: 82 IHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFD---------------GWSQSQS 126
Query: 187 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246
AR V +WNSMI GY E + F +M GV DA +L+ V+S
Sbjct: 127 GVSARDV---------TVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSV 177
Query: 247 -CSSLGF-LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304
C F E GKQ+HG + + D + +AL+D Y K G+ DA ++F E
Sbjct: 178 MCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVE------- 230
Query: 305 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364
IED ++ + WN MIVG +G +LDL+
Sbjct: 231 --------------IEDKSNV---------VLWNVMIVGFGGSGICESSLDLYMLAKNNS 267
Query: 365 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC------- 417
+++ S + AC+ + G Q+ V +GL +D + TSL+ Y KC
Sbjct: 268 VKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAE 327
Query: 418 --------------------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCG 451
GY AL LF MR V P T + ++S C G
Sbjct: 328 TVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLG 387
Query: 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSI 511
L G K A ++ I S ++ L+++ GC +A + + M E D+ W S+
Sbjct: 388 LYNYG-KSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSME-EKDMVAWGSL 445
Query: 512 LRGCVAHGDKGLGRKVAERMIE----LDPE--------NACAYIQ 544
+ G +G KV M + L P+ NACA ++
Sbjct: 446 ISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLE 490
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 271 bits (693), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/495 (29%), Positives = 261/495 (52%), Gaps = 65/495 (13%)
Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
ALE GK++H HI +G V+ + L+ +Y KCG A +V + M D + +++
Sbjct: 100 ALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVN 159
Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDAS 238
GYA G + +AR++FD T+ S W +M++GY+ ++ EAL+L+ M+R +
Sbjct: 160 GYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIF 219
Query: 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298
T++ ++A +++ + GK++HGH + G+ D ++ S+L+D Y K
Sbjct: 220 TVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGK-------------- 265
Query: 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358
CG I++A++IF + K ++SW SMI ++ E LF
Sbjct: 266 -----------------CGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFS 308
Query: 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418
+ R ++++ A V++ACA++++ ELG+QV +T +G D S+SLVD Y KCG
Sbjct: 309 ELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCG 368
Query: 419 Y---------------------------------DALALFNEMRNTGVKPTIITFTAILS 445
+AL F+ + +G KP +TF +LS
Sbjct: 369 NIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLS 428
Query: 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV 505
AC H GLV++G ++F ++ ++ + +HY+C+VDL AR+G + ++I +MP +
Sbjct: 429 ACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSK 488
Query: 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565
+W+S+L GC +G+ L + A+ + +++PEN Y+ +++I+A +G+WE+ +R M
Sbjct: 489 FLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRM 548
Query: 566 REKHVGKLPGCSWAD 580
+E V K PG SW +
Sbjct: 549 QEIGVTKRPGSSWTE 563
Score = 219 bits (559), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 154/529 (29%), Positives = 246/529 (46%), Gaps = 111/529 (20%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
L+Q C+ ++ GK++H H G + + I NRLL+MY +CG+ DA +FDEMP R
Sbjct: 91 LIQVCSQTRALEEGKKVHEHIRTSGFVPGIV-IWNRLLRMYAKCGSLVDARKVFDEMPNR 149
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD------------- 117
+ SWN M+ G+ ++G E++ +LF+ M +K+ +SW +++G+ K D
Sbjct: 150 DLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQ 209
Query: 118 ---------------------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
+ + GK+IH HI+ GLD D VL SSL+++YGKCG
Sbjct: 210 RVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCG-- 267
Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
C+ ++AR +FD+ + V W SMI Y ++
Sbjct: 268 ----------------CI-------------DEARNIFDKIVEKDVVSWTSMIDRYFKSS 298
Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
E LF ++ + + T A VL+AC+ L E GKQVHG+ +VG +S
Sbjct: 299 RWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASS 358
Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
+L+D Y+K CG IE AKH+ P L+S
Sbjct: 359 SLVDMYTK-------------------------------CGNIESAKHVVDGCPKPDLVS 387
Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
W S+I G +QNG P EAL F + K + D + +V+SAC + +E G + F +T
Sbjct: 388 WTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSIT 447
Query: 397 ---IIGLDSDQIISTSLVDFYCKCG-YDAL-ALFNEMRNTGVKPTIITFTAILSACDHCG 451
+ SD T LVD + G ++ L ++ +EM +KP+ + ++L C G
Sbjct: 448 EKHRLSHTSDHY--TCLVDLLARSGRFEQLKSVISEM---PMKPSKFLWASVLGGCSTYG 502
Query: 452 LVKEGQKWFDAMKWQYHIDPEIE-HYSCMVDLFARAGCLNEAVNLIEQM 499
+ + +A + + I+PE Y M +++A AG E + ++M
Sbjct: 503 NIDLAE---EAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRM 548
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 161/334 (48%), Gaps = 40/334 (11%)
Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
EA+ L + ++ AST +++ CS LE GK+VH H G + +++ + LL
Sbjct: 72 EAVQLLGRAKK----PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLL 127
Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
Y+K G DA K+F E+ D N M+ Y+ G +E+A+ +F M K SW +
Sbjct: 128 RMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTA 187
Query: 340 MIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTII 398
M+ G + P EAL L+ M ++ + R + F+++ ++A A + + G+++ +
Sbjct: 188 MVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRA 247
Query: 399 GLDSDQIISTSLVDFYCKCG---------------------------------YDALALF 425
GLDSD+++ +SL+D Y KCG + +LF
Sbjct: 248 GLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLF 307
Query: 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR 485
+E+ + +P TF +L+AC + G++ M + DP S +VD++ +
Sbjct: 308 SELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMT-RVGFDPYSFASSSLVDMYTK 366
Query: 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHG 519
G + A ++++ P + D+ W+S++ GC +G
Sbjct: 367 CGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNG 399
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 108/236 (45%), Gaps = 14/236 (5%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
A +L +C + +GKQ+H + + G + ++ L+ MY +CGN A + D
Sbjct: 322 FAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFA-SSSLVDMYTKCGNIESAKHVVDGC 380
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKADLA--AL 121
P+ + SW ++I G + G +++L+ F+++ + + ++ ++S A L L
Sbjct: 381 PKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGL 440
Query: 122 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
E+ +S + L S + LV+L + G F V++ M +P F ++++ G
Sbjct: 441 EF---FYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGG 497
Query: 181 ---YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 233
Y N +A + + + V + +M + Y + + E + +M+ GV
Sbjct: 498 CSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGV 553
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476
CG L ++ KP T+ ++ C ++EG+K + ++ + P I +
Sbjct: 65 CGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFV-PGIVIW 123
Query: 477 SCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535
+ ++ ++A+ G L +A + ++MP D+ W+ ++ G G RK+ + M E D
Sbjct: 124 NRLLRMYAKCGSLVDARKVFDEMP-NRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKD 181
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 271 bits (693), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 195/623 (31%), Positives = 298/623 (47%), Gaps = 99/623 (15%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL + GK LH ++K + +ST ++N + +Y +CG + A F
Sbjct: 14 LLLKSVAERDLFTGKSLHALYVKSIVASSTY-LSNHFVNLYSKCGRLSYARAAFYSTEEP 72
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
N FS+N +++ + K + QLF+ +PQ + S+N LISG+A A AA+ K++
Sbjct: 73 NVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMR 132
Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-----------AL 177
L F+ V G +L L C D ++++K+ F +S A
Sbjct: 133 K------LGFE-VDGFTLSGLIAACCD------RVDLIKQLHCFSVSGGFDSYSSVNNAF 179
Query: 178 ISGYANCGKMNDARRVF---DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234
++ Y+ G + +A VF D D V WNSMI Y + E +AL L+ +M G
Sbjct: 180 VTYYSKGGLLREAVSVFYGMDELRD--EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFK 237
Query: 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS---DA 291
D TLASVL+A +SL L G+Q HG K G + V S L+D YSK G D+
Sbjct: 238 IDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDS 297
Query: 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351
K+F E+ D ++ NTMI+ Y SM LS+
Sbjct: 298 EKVFQEILSPDLVVWNTMISGY-------------------------SMNEELSE----- 327
Query: 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSL 410
EA+ F M ++ R D S V SAC+N+SS +Q+ + S++I ++ +L
Sbjct: 328 EAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNAL 387
Query: 411 VDFYCKC---------------------------------GYDALALFNEMRNTGVKPTI 437
+ Y K G +AL L+ M ++G+ P
Sbjct: 388 ISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNK 447
Query: 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497
ITF A+LSAC HCG V EGQ++F+ MK + I+PE EHYSCM+DL RAG L EA I+
Sbjct: 448 ITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFID 507
Query: 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557
MP++ W+++L C H + L + A ++ + P A Y+ L++++A + +WE+
Sbjct: 508 AMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEE 567
Query: 558 SSLIRDIMREKHVGKLPGCSWAD 580
+ +R MR K + K PGCSW +
Sbjct: 568 MASVRKSMRGKRIRKKPGCSWIE 590
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 128/514 (24%), Positives = 227/514 (44%), Gaps = 82/514 (15%)
Query: 96 NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155
N P K ++L+ A+ DL GK +H+ + + + + L + VNLY KCG
Sbjct: 2 NQTPWKFKTFRDLLLKSVAERDLFT---GKSLHALYVKSIVASSTYLSNHFVNLYSKCGR 58
Query: 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 215
+ A +EP+ F + ++ YA K++ AR++FD +V +N++ISGY
Sbjct: 59 LSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADA 118
Query: 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275
E A++LF +MR+ G D TL+ +++AC ++ KQ+H + G
Sbjct: 119 RETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDR--VDLIKQLHCFSVSGG-------- 168
Query: 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSL 334
D+YS + N +T YS G + +A +F M +
Sbjct: 169 ---FDSYSS--------------------VNNAFVTYYSKGGLLREAVSVFYGMDELRDE 205
Query: 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394
+SWNSMIV Q+ +AL L+ M ++D F+LASV++A ++ L G Q +
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265
Query: 395 VTIIGLDSDQIISTSLVDFYCKCG-----YDALALFNE---------------------- 427
+ G + + + L+DFY KCG YD+ +F E
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEEL 325
Query: 428 ----------MRNTGVKPTIITFTAILSACDHCGLVKEGQ-KWFDAMKWQYHIDP-EIEH 475
M+ G +P +F + SAC + L Q K + + HI I
Sbjct: 326 SEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN--LSSPSQCKQIHGLAIKSHIPSNRISV 383
Query: 476 YSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE-- 533
+ ++ L+ ++G L +A + ++MP E + ++ +++G HG + +RM++
Sbjct: 384 NNALISLYYKSGNLQDARWVFDRMP-ELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSG 442
Query: 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567
+ P N ++ + S A G+ ++ + M+E
Sbjct: 443 IAP-NKITFVAVLSACAHCGKVDEGQEYFNTMKE 475
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 154/343 (44%), Gaps = 72/343 (20%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN---PTDALLLF 64
LA +L + + + G+Q H +K G ++ + + L+ Y +CG D+ +F
Sbjct: 243 LASVLNALTSLDHLIGGRQFHGKLIKAGFHQNS-HVGSGLIDFYSKCGGCDGMYDSEKVF 301
Query: 65 DEMPRRNCFSWNAMIEGF-MKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLA 119
E+ + WN MI G+ M E++++ F M + +D S+ + S A ++L+
Sbjct: 302 QEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS--ACSNLS 359
Query: 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 179
+ KQIH GL S + S+ +++ +ALIS
Sbjct: 360 SPSQCKQIH------GLAIKSHIPSNRISVN------------------------NALIS 389
Query: 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
Y G + DAR VFDR + ++V +N MI GY + TEALLL+ +M +G+ + T
Sbjct: 390 LYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKIT 449
Query: 240 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299
+VLSAC+ G ++ G++ + + +T+ K+ E +
Sbjct: 450 FVAVLSACAHCGKVDEGQEYF---------------NTMKETF----------KIEPEAE 484
Query: 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMI 341
Y + MI + G++E+A+ MP K ++W +++
Sbjct: 485 HY-----SCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALL 522
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/577 (27%), Positives = 269/577 (46%), Gaps = 94/577 (16%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
N ++ Y G P +A LFDEM RN SWN ++ G++K ++ +F +MP++N
Sbjct: 52 NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111
Query: 105 SWNMLISGFAKADLAA--------LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 156
SW ++ G+ + + + ++ ++ GL D G
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDD--------------GRI 157
Query: 157 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216
+ A ++ +MM D + +I G G++++AR +FD + + V W +MI+GY NN
Sbjct: 158 DKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNN 217
Query: 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 276
A LF V+ + + ++ +
Sbjct: 218 RVDVARKLFE------VMPEKTEVS---------------------------------WT 238
Query: 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336
++L Y+ G DA + F + + I N MI + G I A+ +F M ++ +
Sbjct: 239 SMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNAT 298
Query: 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396
W MI + G +EALDLF M K +R SL S++S CA ++SL+ G QV A +
Sbjct: 299 WRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLV 358
Query: 397 IIGLDSDQIISTSLVDFYCKCGY---------------------------------DALA 423
D D +++ L+ Y KCG +AL
Sbjct: 359 RCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALK 418
Query: 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLF 483
+F+EM ++G P +T AIL+AC + G ++EG + F++M+ ++ + P +EHYSC VD+
Sbjct: 419 IFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDML 478
Query: 484 ARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543
RAG +++A+ LIE M + D +W ++L C H L A+++ E +P+NA Y+
Sbjct: 479 GRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYV 538
Query: 544 QLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
LSSI A+ +W +++R MR +V K PGCSW +
Sbjct: 539 LLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIE 575
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 120/261 (45%), Gaps = 21/261 (8%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L C T S+ G+Q+H H ++ + + +A+ L+ MY++CG A L+FD
Sbjct: 334 LISILSVCATLASLQYGRQVHAHLVRCQ-FDDDVYVASVLMTMYVKCGELVKAKLVFDRF 392
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-LISGFAKADLAA-LEYGK 125
++ WN++I G+ G E++L++F+ MP + LI+ A LE G
Sbjct: 393 SSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGL 452
Query: 126 QIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYAN 183
+I + +V S V++ G+ G + A +++ M +PD AL+
Sbjct: 453 EIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKT 512
Query: 184 CGKMN----DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
+++ A+++F+ D + + + S S ++ + ++ MR N V
Sbjct: 513 HSRLDLAEVAAKKLFENEPDNAGT-YVLLSSINASRSKWGDVAVVRKNMRTNNV------ 565
Query: 240 LASVLSACSSLGFLEHGKQVH 260
S CS ++E GK+VH
Sbjct: 566 --SKFPGCS---WIEVGKKVH 581
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 269 bits (688), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 179/599 (29%), Positives = 280/599 (46%), Gaps = 104/599 (17%)
Query: 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
S+ +G+Q+H LK G L+ L ++N L+ MY + A +FD M R+ SWN++I
Sbjct: 330 SLALGQQVHCMALKLG-LDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVI 388
Query: 80 EGFMKLGHKEKS----LQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSH-ILVN 134
G + G + ++ +QL + + ++ ++ A + L KQ+H H I +N
Sbjct: 389 AGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKA-ASSLPEGLSLSKQVHVHAIKIN 447
Query: 135 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194
+ D F +ALI Y+ M +A +F
Sbjct: 448 NVS--------------------------------DSFVSTALIDAYSRNRCMKEAEILF 475
Query: 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 254
+R + V WN+M++GY +++ + L LF M + G D TLA+V C L +
Sbjct: 476 ERH-NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAIN 534
Query: 255 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314
GKQVH +A K G D+ V+S +LD Y K G S A F + V D + TMI+
Sbjct: 535 QGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMIS--- 591
Query: 315 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374
G +NG A +F M + + D+F++A+
Sbjct: 592 ----------------------------GCIENGEEERAFHVFSQMRLMGVLPDEFTIAT 623
Query: 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC----------------- 417
+ A + +++LE G Q+ A + +D + TSLVD Y KC
Sbjct: 624 LAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN 683
Query: 418 ----------------GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461
G + L LF +M++ G+KP +TF +LSAC H GLV E K
Sbjct: 684 ITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMR 743
Query: 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK 521
+M Y I PEIEHYSC+ D RAG + +A NLIE M EA M+ ++L C GD
Sbjct: 744 SMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDT 803
Query: 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWAD 580
G++VA +++EL+P ++ AY+ LS+++A + +W++ L R +M+ V K PG SW +
Sbjct: 804 ETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 862
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/450 (26%), Positives = 197/450 (43%), Gaps = 86/450 (19%)
Query: 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 208
+ GKC + ++L + P+ F ++ LIS Y+ CG + ARRVFD+ D V WNS+
Sbjct: 56 MLGKC----THARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSI 111
Query: 209 ISGYISNNE-----DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263
++ Y ++E +A LLF +R++ V TL+ +L C G++ + HG+A
Sbjct: 112 LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA 171
Query: 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323
CK+G+ D VA AL++ Y K G + LF E+ D +L N M+ Y G E+A
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 231
Query: 324 HIFRTM------PN--------------------KSLISWN-----SMIV----GLSQ-- 346
+ PN KS + N S I+ GLS+
Sbjct: 232 DLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYL 291
Query: 347 -NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405
+G L F +M + D+ D+ + +++ + SL LG+QV +GLD
Sbjct: 292 HSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLT 351
Query: 406 ISTSLVDFYCKC---GY------------------------------DALALFNEMRNTG 432
+S SL++ YCK G+ +A+ LF ++ G
Sbjct: 352 VSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG 411
Query: 433 VKPTIITFTAILSACDHC--GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLN 490
+KP T T++L A GL Q A+K D + + ++D ++R C+
Sbjct: 412 LKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVS--TALIDAYSRNRCMK 469
Query: 491 EAVNLIEQMPFEADVGMWSSILRGCVAHGD 520
EA L E+ F D+ W++++ G D
Sbjct: 470 EAEILFERHNF--DLVAWNAMMAGYTQSHD 497
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 136/600 (22%), Positives = 245/600 (40%), Gaps = 114/600 (19%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
L++ T + +GK H L N + N L+ MY +CG+ T A +FD+MP R
Sbjct: 45 FLRNAITSSDLMLGKCTHARILTFE-ENPERFLINNLISMYSKCGSLTYARRVFDKMPDR 103
Query: 71 NCFSWNAMIEGFMK-----LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAA--LEY 123
+ SWN+++ + + + + +++ LF ++ Q ++ M +S K L + +
Sbjct: 104 DLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWA 163
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
+ H + GLD D + +LVN+Y K G + M D + ++ Y
Sbjct: 164 SESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLE 223
Query: 184 CGKMNDA----------------------------------RRVFDRTTDTSSV----MW 205
G +A + F D SSV
Sbjct: 224 MGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFR 283
Query: 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265
N +S Y+ + + + L F M + V D T +L+ + L G+QVH A K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343
Query: 266 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 325
+G +D ++ S N++I +Y + A+ +
Sbjct: 344 LG-LDLMLTVS------------------------------NSLINMYCKLRKFGFARTV 372
Query: 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI-SS 384
F M + LISWNS+I G++QNG +EA+ LF + + L+ D++++ SV+ A +++
Sbjct: 373 FDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEG 432
Query: 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYC--KC------------------------- 417
L L +QV I SD +ST+L+D Y +C
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNFDLVAWNAMMAGY 492
Query: 418 -----GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD-AMKWQYHIDP 471
G+ L LF M G + T + C + +G++ A+K Y +D
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552
Query: 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
+ S ++D++ + G ++ A + +P DV W++++ GC+ +G++ V +M
Sbjct: 553 WVS--SGILDMYVKCGDMSAAQFAFDSIPVPDDVA-WTTMISGCIENGEEERAFHVFSQM 609
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 149/325 (45%), Gaps = 42/325 (12%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
LA + ++C +I+ GKQ+H + +K G + L +++ +L MY++CG+ + A FD +
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAIKSG-YDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 578
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAD--LAALEYGK 125
P + +W MI G ++ G +E++ +F+ M I+ AKA L ALE G+
Sbjct: 579 PVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGR 638
Query: 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
QIH++ L D +G+SLV++Y KCG + D +CL
Sbjct: 639 QIHANALKLNCTNDPFVGTSLVDMYAKCGSID------------DAYCL----------- 675
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
F R + WN+M+ G + E E L LF +M+ G+ D T VLS
Sbjct: 676 --------FKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLS 727
Query: 246 ACSSLGFL----EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301
ACS G + +H + +HG G+ ++ S L D + G+ A L + +
Sbjct: 728 ACSHSGLVSEAYKHMRSMHG---DYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSME 784
Query: 302 DTI-LLNTMITVYSSCGRIEDAKHI 325
+ + T++ G E K +
Sbjct: 785 ASASMYRTLLAACRVQGDTETGKRV 809
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 268 bits (685), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 187/609 (30%), Positives = 295/609 (48%), Gaps = 97/609 (15%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L C I +GK +H + K L+ L + N L+ MY +CG T+A ++F
Sbjct: 295 LVTVLPVCAREREIGLGKGVH-GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMN 353
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-AKADLAALEYGKQ 126
+N SWN M+ GF G + F+V+ Q ML G KAD +
Sbjct: 354 NNKNVVSWNTMVGGFSAEGDTHGT---FDVLRQ-------MLAGGEDVKADEVTILNAVP 403
Query: 127 IHSHILVNGLDFDSVLGS-SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 185
+ H +S L S ++ Y +F V N A ++ YA CG
Sbjct: 404 VCFH--------ESFLPSLKELHCYSLKQEFVYNELVAN-----------AFVASYAKCG 444
Query: 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245
++ A+RVF + WN++I G+ +N+ +L +M+ +G+L D+ T+ S+LS
Sbjct: 445 SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 504
Query: 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 305
ACS L L GK+VHG ++ + +R +L VY ++L
Sbjct: 505 ACSKLKSLRLGKEVHGF---------------IIRNWLER-----------DLFVYLSVL 538
Query: 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
++Y CG + + +F M +KSL+SWN++I G QNG P AL +F M +
Sbjct: 539 -----SLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 593
Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG------- 418
++ S+ V AC+ + SL LG + A L+ D I+ SL+D Y K G
Sbjct: 594 QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 653
Query: 419 --------------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGL 452
+A+ LF EM+ TG P +TF +L+AC+H GL
Sbjct: 654 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 713
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI-EQMPFEADVGMWSSI 511
+ EG ++ D MK + + P ++HY+C++D+ RAG L++A+ ++ E+M EADVG+W S+
Sbjct: 714 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 773
Query: 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
L C H + +G KVA ++ EL+PE Y+ LS+++A G+WE +R M E +
Sbjct: 774 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 833
Query: 572 KLPGCSWAD 580
K GCSW +
Sbjct: 834 KDAGCSWIE 842
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 132/571 (23%), Positives = 237/571 (41%), Gaps = 124/571 (21%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
++++C + +G +H +K G++ + N L+ Y G TDAL LFD MP R
Sbjct: 193 VIKACAGMSDVGIGLAVHGLVVKTGLVEDVF-VGNALVSFYGTHGFVTDALQLFDIMPER 251
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAAL--------- 121
N SWN+MI F G E+S L M ++N G D+A L
Sbjct: 252 NLVSWNSMIRVFSDNGFSEESFLLLGEMMEENG-------DGAFMPDVATLVTVLPVCAR 304
Query: 122 ----EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 177
GK +H + LD + VL ++L+++Y KCG +A +
Sbjct: 305 EREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF-------------- 350
Query: 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG--VLE 235
KMN+ + V V WN+M+ G+ + + + +M G V
Sbjct: 351 --------KMNNNKNV---------VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKA 393
Query: 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 295
D T+ + + C FL K++H ++ K + + +VA+A + +Y+K
Sbjct: 394 DEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAK----------- 442
Query: 296 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355
CG + A+ +F + +K++ SWN++I G +Q+ P +LD
Sbjct: 443 --------------------CGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLD 482
Query: 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415
M L D F++ S++SAC+ + SL LG++V + L+ D + S++ Y
Sbjct: 483 AHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYI 542
Query: 416 KCG--------YD-------------------------ALALFNEMRNTGVKPTIITFTA 442
CG +D AL +F +M G++ I+
Sbjct: 543 HCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP 602
Query: 443 ILSACDHCGLVKEGQKWFD-AMKWQYHIDPEIEHYSC-MVDLFARAGCLNEAVNLIEQMP 500
+ AC ++ G++ A+K H+ + +C ++D++A+ G + ++ + +
Sbjct: 603 VFGACSLLPSLRLGREAHAYALK---HLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK 659
Query: 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERM 531
E W++++ G HG K+ E M
Sbjct: 660 -EKSTASWNAMIMGYGIHGLAKEAIKLFEEM 689
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 131/567 (23%), Positives = 242/567 (42%), Gaps = 116/567 (20%)
Query: 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
+ L LLQ+ I +G+++H L + + R++ MY CG+P D+ +FD
Sbjct: 85 EALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFD 144
Query: 66 EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-----FSWNMLISGFAKADLAA 120
+ +N F WNA+I + + ++ L+ F M D F++ +I A A ++
Sbjct: 145 ALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIK--ACAGMSD 202
Query: 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 180
+ G +H ++ GL D +G++LV+ YG
Sbjct: 203 VGIGLAVHGLVVKTGLVEDVFVGNALVSFYG----------------------------- 233
Query: 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-MRRNG---VLED 236
G + DA ++FD + + V WNSMI + N E+ LL + M NG + D
Sbjct: 234 --THGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPD 291
Query: 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296
+TL +VL C+ + GK VHG A K+ + ++++ +AL+D YSK
Sbjct: 292 VATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSK------------ 339
Query: 297 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356
CG I +A+ IF+ NK+++SWN+M+ G S G D+
Sbjct: 340 -------------------CGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDV 380
Query: 357 FCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414
M D++ D+ ++ + + C + S L +++ +++++ + V Y
Sbjct: 381 LRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASY 440
Query: 415 CKCGYDALA--LFN-------------------------------EMRNTGVKPTIITFT 441
KCG + A +F+ +M+ +G+ P T
Sbjct: 441 AKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVC 500
Query: 442 AILSACDHCGLVKEGQK--WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499
++LSAC ++ G++ F W ++ ++ Y ++ L+ G L L + M
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNW---LERDLFVYLSVLSLYIHCGELCTVQALFDAM 557
Query: 500 PFEADVGMWSSILRGCVAHG--DKGLG 524
++ V W++++ G + +G D+ LG
Sbjct: 558 EDKSLVS-WNTVITGYLQNGFPDRALG 583
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 268 bits (684), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 174/603 (28%), Positives = 285/603 (47%), Gaps = 97/603 (16%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
L ++C S+ G+ LH ++ GI N ++ + N +LQMY C + DA LFDEM
Sbjct: 89 LFEACRELRSLSHGRLLHDR-MRMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSEL 147
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGKQIH 128
N S MI + + G +K++ LF+ M D + + + K+ + AL++G+QIH
Sbjct: 148 NAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIH 207
Query: 129 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 188
+H++ GL ++ + + +VN+Y KC G +
Sbjct: 208 AHVIRAGLCSNTSIETGIVNMYVKC-------------------------------GWLV 236
Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
A+RVFD+ V ++ GY +AL LF + GV D+ + VL AC+
Sbjct: 237 GAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACA 296
Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
SL L GKQ+H K+G+ +V V + L+D Y K AC+ F E++ + + +
Sbjct: 297 SLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSA 356
Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
+I+ Y + E+A F KSL S N+ I ++
Sbjct: 357 IISGYCQMSQFEEAVKTF-----KSLRSKNASI-------------------------LN 386
Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
F+ S+ AC+ ++ +G QV A L Q ++L+ Y KCG
Sbjct: 387 SFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFE 446
Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
+AL LF +M + G+KP +TF A+L+AC H GLV++
Sbjct: 447 SMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQ 506
Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
G+ D M +Y++ P I+HY CM+D++AR+G L+EA+ ++ MPFE D W L GC
Sbjct: 507 GKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGC 566
Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
H + LG E + +LDPE+ Y+ +++ +G+WE+++ + +M E+ + K
Sbjct: 567 WTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELS 626
Query: 576 CSW 578
CSW
Sbjct: 627 CSW 629
Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 127/328 (38%), Gaps = 66/328 (20%)
Query: 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279
EA +M + GV + + + AC L L HG+ +H ++G+ +
Sbjct: 66 EAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRM-RMGIEN--------- 115
Query: 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 339
PS +L N ++ +Y C +EDA +F M + +S +
Sbjct: 116 --------PS-------------VLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTT 154
Query: 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399
MI ++ G +A+ LF M + +++ + N +L+ G Q+ A V G
Sbjct: 155 MISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAG 214
Query: 400 LDSDQIISTSLVDFYCKCGY---------------------------------DALALFN 426
L S+ I T +V+ Y KCG+ DAL LF
Sbjct: 215 LCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFV 274
Query: 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486
++ GV+ F+ +L AC + G K A + ++ E+ + +VD + +
Sbjct: 275 DLVTEGVEWDSFVFSVVLKACASLEELNLG-KQIHACVAKLGLESEVSVGTPLVDFYIKC 333
Query: 487 GCLNEAVNLIEQMPFEADVGMWSSILRG 514
A +++ DV WS+I+ G
Sbjct: 334 SSFESACRAFQEIREPNDVS-WSAIISG 360
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
N +V LS++ EA + M+K + + +S + AC + SL G + R+ +
Sbjct: 52 NLHLVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRM 111
Query: 398 IGLDSDQIISTSLVDFYCKCG--YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
+ ++ ++ YC+C DA LF+EM ++ T ++SA G++ +
Sbjct: 112 GIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNA----VSRTTMISAYAEQGILDK 167
Query: 456 GQKWFDAM 463
F M
Sbjct: 168 AVGLFSGM 175
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 266 bits (679), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 175/609 (28%), Positives = 296/609 (48%), Gaps = 103/609 (16%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
LL CN + Q+H +K G N L ++N LL+ Y A +LF+E+P
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEY--GKQI 127
++ ++N +I G+ K G +S+ LF M Q + SG KA + ++ G+Q+
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272
Query: 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187
H+ + G D+ +G+ +++ Y K ++VL
Sbjct: 273 HALSVTTGFSRDASVGNQILDFYSK------HDRVL------------------------ 302
Query: 188 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247
+ R +FD + V +N +IS Y ++ +L F +M+ G A++LS
Sbjct: 303 -ETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIA 361
Query: 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL- 306
++L L+ G+Q+H A ++A+A D+IL
Sbjct: 362 ANLSSLQMGRQLHCQA---------LLATA------------------------DSILHV 388
Query: 307 -NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365
N+++ +Y+ C E+A+ IF+++P ++ +SW ++I G Q G L LF M +L
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNL 448
Query: 366 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDALA 423
R D+ + A+V+ A A+ +SL LG+Q+ A + G + + LVD Y KCG DA+
Sbjct: 449 RADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQ 508
Query: 424 LFNEM--RN-----------------------------TGVKPTIITFTAILSACDHCGL 452
+F EM RN +G++P ++ +L+AC HCG
Sbjct: 509 VFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGF 568
Query: 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSIL 512
V++G ++F AM Y I P+ +HY+CM+DL R G EA L+++MPFE D MWSS+L
Sbjct: 569 VEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVL 628
Query: 513 RGCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571
C H ++ L + AE++ ++ +A AY+ +S+I+A +GEWEK ++ MRE+ +
Sbjct: 629 NACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIK 688
Query: 572 KLPGCSWAD 580
K+P SW +
Sbjct: 689 KVPAYSWVE 697
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 134/539 (24%), Positives = 232/539 (43%), Gaps = 80/539 (14%)
Query: 44 ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
+N +++ +R G + A ++DEMP +N S N MI G +K G + LF+ MP +
Sbjct: 51 SNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTV 110
Query: 104 FSWNMLISGFAKADL--AALEYGKQI---HSHILVNGLDFDSVL-GSSLVNLYGKCGDFN 157
+W +L+ +A+ A + +Q+ S L + + F ++L G + G +
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVH 170
Query: 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217
+ L P + L+ Y +++ A +F+ + SV +N++I+GY +
Sbjct: 171 AFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGL 230
Query: 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277
TE++ LF KMR++G T + VL A L G+Q+H + G D V +
Sbjct: 231 YTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQ 290
Query: 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 337
+LD YSK + LF E+ D + N +I+ YS + E + H FR M
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM-------- 342
Query: 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397
+G + F A+++S AN+SSL++G Q+ + +
Sbjct: 343 --QCMGFDRRN---------------------FPFATMLSIAANLSSLQMGRQLHCQALL 379
Query: 398 IGLDSDQIISTSLVDFYCKC--------------------------GY-------DALAL 424
DS + SLVD Y KC GY L L
Sbjct: 380 ATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKL 439
Query: 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484
F +MR + ++ TF +L A + G++ + +++ + S +VD++A
Sbjct: 440 FTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVDMYA 498
Query: 485 RAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVA---ERMIE--LDPEN 538
+ G + +AV + E+MP V W++++ AH D G G +MIE L P++
Sbjct: 499 KCGSIKDAVQVFEEMPDRNAVS-WNALIS---AHADNGDGEAAIGAFAKMIESGLQPDS 553
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 112/241 (46%), Gaps = 15/241 (6%)
Query: 237 ASTLASV--LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294
+ TLA++ L S FL+ ++V K G D ++ +++ +RG S A K+
Sbjct: 12 SRTLATLRQLRQPSPATFLD-TRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKV 70
Query: 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354
+ E+ +T+ NTMI+ + G + A+ +F MP++++++W ++ ++N EA
Sbjct: 71 YDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAF 130
Query: 355 DLF---CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-- 409
LF C + L D + +++ C + QV A +G D++ ++ S
Sbjct: 131 KLFRQMCRSSSCTLP-DHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNV 189
Query: 410 LVDFYCKCGYDALA--LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY 467
L+ YC+ LA LF E+ + +TF +++ + GL E F M+
Sbjct: 190 LLKSYCEVRRLDLACVLFEEI----PEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG 245
Query: 468 H 468
H
Sbjct: 246 H 246
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 5/177 (2%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
A +L++ + S+ +GKQLH ++ G L + + L+ MY +CG+ DA+ +F+EM
Sbjct: 455 FATVLKASASFASLLLGKQLHAFIIRSGNLENVFS-GSGLVDMYAKCGSIKDAVQVFEEM 513
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--DLAALEYGK 125
P RN SWNA+I G E ++ F M + ++ I G A +E G
Sbjct: 514 PDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGT 573
Query: 126 Q-IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 180
+ + + G+ + +++L G+ G F A ++++ M EPD+ S++++
Sbjct: 574 EYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNA 630
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 265 bits (678), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 182/605 (30%), Positives = 292/605 (48%), Gaps = 89/605 (14%)
Query: 24 GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
KQLH F++ L+ T A+ ++ +Y +ALLLF + +W ++I F
Sbjct: 24 AKQLHAQFIRTQSLSHTS--ASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81
Query: 84 KLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLD 137
K+L F M P N F ++L S DL +G+ +H I+ G+D
Sbjct: 82 DQSLFSKALASFVEMRASGRCPDHNVFP-SVLKSCTMMMDL---RFGESVHGFIVRLGMD 137
Query: 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---------PDDFCLSALISGYANCGKMN 188
D G++L+N+Y K S V N+ E +D I + ++
Sbjct: 138 CDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG----ID 193
Query: 189 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248
RRVF+ V +N++I+GY + +AL + +M + D+ TL+SVL S
Sbjct: 194 SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFS 253
Query: 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308
+ GK++HG+ + G+ DV + S+L+D Y+K
Sbjct: 254 EYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAK------------------------ 289
Query: 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368
RIED++ +F + + ISWNS++ G QNG EAL LF M ++
Sbjct: 290 -------SARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPG 342
Query: 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---------- 418
+ +SVI ACA++++L LG+Q+ V G S+ I+++LVD Y KCG
Sbjct: 343 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402
Query: 419 -----------------------YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKE 455
++A++LF EM+ GVKP + F A+L+AC H GLV E
Sbjct: 403 RMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDE 462
Query: 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515
+F++M Y ++ E+EHY+ + DL RAG L EA N I +M E +WS++L C
Sbjct: 463 AWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSC 522
Query: 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPG 575
H + L KVAE++ +D EN AY+ + +++A++G W++ + +R MR+K + K P
Sbjct: 523 SVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPA 582
Query: 576 CSWAD 580
CSW +
Sbjct: 583 CSWIE 587
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 21/262 (8%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ ++ +C ++H+GKQLH + L+ G S + IA+ L+ MY +CGN A +FD M
Sbjct: 346 FSSVIPACAHLATLHLGKQLHGYVLRGG-FGSNIFIASALVDMYSKCGNIKAARKIFDRM 404
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEY 123
+ SW A+I G GH +++ LF M ++ N ++ +++ + L +
Sbjct: 405 NVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAW 464
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA-NQVLNMMKEPDDFCLSALISGYA 182
G +S V GL+ + +++ +L G+ G A N + M EP S L+S +
Sbjct: 465 G-YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCS 523
Query: 183 NCGKMNDARRVFDR--TTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 239
+ A +V ++ T D+ ++ + M + Y SN E L +MR+ G+ +
Sbjct: 524 VHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKP-- 581
Query: 240 LASVLSACSSLGFLEHGKQVHG 261
ACS ++E + HG
Sbjct: 582 ------ACS---WIEMKNKTHG 594
>sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770
OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2
Length = 774
Score = 265 bits (677), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 185/654 (28%), Positives = 303/654 (46%), Gaps = 114/654 (17%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDE 66
LA +L +C+ G + H +K G L+ + + N LL MY +CG D + +F+
Sbjct: 141 LASVLSACSKVLDGVFGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFIVDYGVRVFES 199
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF-----------AK 115
+ + N S+ A+I G + +++Q+F +M +K ++ +S +
Sbjct: 200 LSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSL 259
Query: 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175
+++ E GKQIH L G D L +SL+ +Y K D N A + M E + +
Sbjct: 260 SEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWN 319
Query: 176 ALISGYAN-----------------------------------CGKMNDARRVFDRTTDT 200
+I G+ G + RR+F
Sbjct: 320 IMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQP 379
Query: 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260
S WN+M+SGY + EA+ F +M+ + D +TL+ +LS+C+ L FLE GKQ+H
Sbjct: 380 SVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIH 439
Query: 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320
G + + + + S L I VYS C ++E
Sbjct: 440 GVVIRTEISKNSHIVSGL-------------------------------IAVYSECEKME 468
Query: 321 DAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISA 378
++ IF N+ + WNSMI G N +AL LF M++ L ++ S A+V+S+
Sbjct: 469 ISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSS 528
Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------------------- 419
C+ + SL G Q V G SD + T+L D YCKCG
Sbjct: 529 CSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIW 588
Query: 420 --------------DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465
+A+ L+ +M ++G KP ITF ++L+AC H GLV+ G + +M+
Sbjct: 589 NEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQR 648
Query: 466 QYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGR 525
+ I+PE++HY C+VD RAG L +A L E P+++ +W +L C HGD L R
Sbjct: 649 IHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLAR 708
Query: 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579
+VAE+++ LDP+++ AY+ LS+ +++ +W+ S+ ++ +M + V K PG SW
Sbjct: 709 RVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAALQGLMNKNRVHKTPGQSWT 762
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 154/602 (25%), Positives = 268/602 (44%), Gaps = 92/602 (15%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
YLA LL+ GK +H ++ G+ + T + NRLL +Y+ CG+ A +FDE
Sbjct: 8 YLASLLRCYRDERCKLSGKVIHGFIVRMGMKSDTY-LCNRLLDLYIECGDGDYARKVFDE 66
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA---DLAALEY 123
M R+ +SWNA + K+G ++ ++F+ MP+++ SWN +IS + + A + Y
Sbjct: 67 MSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVY 126
Query: 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 183
+ + L + SVL + L G G + + + F +AL+S YA
Sbjct: 127 KRMVCDGFLPSRFTLASVLSACSKVLDGVFG-MRCHGVAVKTGLDKNIFVGNALLSMYAK 185
Query: 184 CGKMND-ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242
CG + D RVF+ + + V + ++I G N+ EA+ +F M GV D+ L++
Sbjct: 186 CGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSN 245
Query: 243 VLS------ACSSLGFL---EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293
+LS C SL + E GKQ+H A ++G D+ + ++LL+ Y+K + A
Sbjct: 246 ILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAEL 305
Query: 294 LFSELKVYDTILLNTM--------------------------------ITVYSSC---GR 318
+F+E+ + + N M I+V +C G
Sbjct: 306 IFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGD 365
Query: 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378
+E + IF ++P S+ +WN+M+ G S EA+ F M +L+ DK +L+ ++S+
Sbjct: 366 VETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSS 425
Query: 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC--------------------- 417
CA + LE G+Q+ V + + I + L+ Y +C
Sbjct: 426 CARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIAC 485
Query: 418 ------GY-------DALALFNEMRNTGVK-PTIITFTAILSACDH-CGLVKEGQKWFDA 462
G+ AL LF M T V P +F +LS+C C L+ Q
Sbjct: 486 WNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLV 545
Query: 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKG 522
+K Y D +E + + D++ + G ++ A + + + +W+ ++ G +G G
Sbjct: 546 VKSGYVSDSFVE--TALTDMYCKCGEIDSARQFFDAV-LRKNTVIWNEMIHG---YGHNG 599
Query: 523 LG 524
G
Sbjct: 600 RG 601
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,021,864
Number of Sequences: 539616
Number of extensions: 9895782
Number of successful extensions: 29458
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 20050
Number of HSP's gapped (non-prelim): 2096
length of query: 686
length of database: 191,569,459
effective HSP length: 124
effective length of query: 562
effective length of database: 124,657,075
effective search space: 70057276150
effective search space used: 70057276150
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)