Query 005642
Match_columns 686
No_of_seqs 723 out of 3355
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 11:31:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.1E-79 4.6E-84 693.9 62.2 578 2-587 83-739 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.3E-70 2.8E-75 622.3 63.4 581 3-603 49-717 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.2E-66 2.6E-71 576.0 52.3 481 70-587 85-576 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-62 2.7E-67 545.1 56.9 513 5-533 370-908 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.6E-62 1.6E-66 538.8 59.4 521 37-575 367-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.7E-59 3.7E-64 519.0 48.7 455 6-500 88-555 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7E-32 1.5E-36 313.5 61.3 547 10-570 300-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-31 2.2E-36 312.0 60.9 541 15-569 271-833 (899)
9 PRK11447 cellulose synthase su 100.0 8.8E-25 1.9E-29 254.3 58.8 552 5-571 28-703 (1157)
10 PRK11447 cellulose synthase su 100.0 1.7E-23 3.6E-28 243.6 55.8 545 9-567 116-739 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 5.3E-21 1.1E-25 212.4 58.1 532 17-569 56-707 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 2.7E-22 5.9E-27 197.1 34.3 438 75-557 51-508 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 7.1E-22 1.5E-26 194.2 31.2 414 145-569 53-486 (966)
14 PRK09782 bacteriophage N4 rece 99.9 4.8E-19 1E-23 197.0 57.5 546 4-571 77-743 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 8.9E-18 1.9E-22 183.9 42.6 412 143-568 130-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 1.1E-16 2.4E-21 166.6 45.7 504 88-602 146-705 (1018)
17 PRK11788 tetratricopeptide rep 99.8 3E-18 6.6E-23 178.2 33.9 301 209-576 42-355 (389)
18 PRK15174 Vi polysaccharide exp 99.8 1.2E-17 2.6E-22 182.1 38.7 339 209-567 49-402 (656)
19 KOG2002 TPR-containing nuclear 99.8 3.3E-16 7.2E-21 163.0 45.3 534 21-568 146-745 (1018)
20 PRK10049 pgaA outer membrane p 99.8 2.2E-16 4.9E-21 176.0 46.4 395 139-568 14-456 (765)
21 PRK11788 tetratricopeptide rep 99.8 5.7E-18 1.2E-22 176.1 28.6 232 142-405 109-354 (389)
22 PRK15174 Vi polysaccharide exp 99.8 1.6E-16 3.4E-21 173.3 40.0 367 152-538 17-407 (656)
23 PRK10049 pgaA outer membrane p 99.8 8.1E-16 1.8E-20 171.5 45.4 402 107-541 19-463 (765)
24 PRK14574 hmsH outer membrane p 99.8 3.3E-15 7.2E-20 163.1 46.7 417 119-567 48-512 (822)
25 TIGR00990 3a0801s09 mitochondr 99.8 6.6E-16 1.4E-20 169.2 41.1 251 216-499 308-568 (615)
26 PRK14574 hmsH outer membrane p 99.8 8E-15 1.7E-19 160.2 45.4 442 77-547 39-525 (822)
27 KOG4422 Uncharacterized conser 99.7 2.4E-13 5.2E-18 129.1 36.5 344 169-535 205-591 (625)
28 KOG0495 HAT repeat protein [RN 99.7 3.8E-11 8.3E-16 120.3 48.8 529 19-569 265-847 (913)
29 KOG2003 TPR repeat-containing 99.7 3.4E-14 7.4E-19 135.5 25.9 451 104-561 199-715 (840)
30 KOG2076 RNA polymerase III tra 99.7 3.6E-12 7.8E-17 132.6 42.3 515 51-568 149-769 (895)
31 KOG0495 HAT repeat protein [RN 99.6 2E-10 4.3E-15 115.3 48.4 468 84-567 388-879 (913)
32 KOG2076 RNA polymerase III tra 99.6 2.8E-10 6.1E-15 118.8 48.5 531 17-551 151-786 (895)
33 KOG4422 Uncharacterized conser 99.6 6.9E-11 1.5E-15 112.7 39.0 419 18-499 128-587 (625)
34 KOG1126 DNA-binding cell divis 99.6 3.4E-13 7.3E-18 135.9 22.0 279 252-570 334-622 (638)
35 KOG2047 mRNA splicing factor [ 99.6 9.2E-10 2E-14 110.5 45.5 503 8-523 105-712 (835)
36 KOG1155 Anaphase-promoting com 99.6 5.5E-11 1.2E-15 114.7 35.5 284 245-567 235-535 (559)
37 KOG1915 Cell cycle control pro 99.5 1E-09 2.2E-14 106.2 42.3 437 120-567 88-584 (677)
38 KOG1915 Cell cycle control pro 99.5 2.4E-09 5.1E-14 103.8 44.5 454 71-533 72-584 (677)
39 KOG2003 TPR repeat-containing 99.5 4.6E-12 1E-16 121.2 25.7 198 316-519 503-708 (840)
40 PF13429 TPR_15: Tetratricopep 99.5 1.9E-14 4.1E-19 141.5 9.6 221 309-567 50-276 (280)
41 KOG0547 Translocase of outer m 99.5 7.9E-11 1.7E-15 114.4 32.7 218 344-567 336-565 (606)
42 KOG4318 Bicoid mRNA stability 99.5 1.6E-10 3.5E-15 119.9 35.2 520 27-579 12-604 (1088)
43 KOG1155 Anaphase-promoting com 99.5 1.1E-10 2.3E-15 112.7 31.6 295 269-567 161-494 (559)
44 KOG1173 Anaphase-promoting com 99.5 1.8E-10 3.8E-15 114.2 33.5 344 5-362 16-374 (611)
45 KOG1126 DNA-binding cell divis 99.5 7.4E-12 1.6E-16 126.4 23.4 279 120-403 334-625 (638)
46 PRK10747 putative protoheme IX 99.5 7.9E-11 1.7E-15 121.3 29.4 274 119-397 98-389 (398)
47 PRK10747 putative protoheme IX 99.4 1.6E-10 3.5E-15 119.0 30.3 284 184-534 97-390 (398)
48 TIGR00540 hemY_coli hemY prote 99.4 5.2E-10 1.1E-14 115.9 32.6 129 436-568 262-399 (409)
49 KOG3785 Uncharacterized conser 99.4 5.7E-09 1.2E-13 97.5 34.3 467 49-576 30-522 (557)
50 KOG4340 Uncharacterized conser 99.4 5.6E-10 1.2E-14 101.6 27.1 367 205-586 13-458 (459)
51 PF13429 TPR_15: Tetratricopep 99.4 1.1E-12 2.4E-17 129.0 10.6 249 145-397 13-276 (280)
52 TIGR00540 hemY_coli hemY prote 99.4 3.4E-10 7.3E-15 117.4 28.8 287 108-396 87-397 (409)
53 KOG2376 Signal recognition par 99.4 5E-09 1.1E-13 104.6 34.5 428 119-565 26-517 (652)
54 KOG2047 mRNA splicing factor [ 99.4 1.7E-07 3.7E-12 94.6 44.3 493 58-568 92-687 (835)
55 KOG0547 Translocase of outer m 99.3 1.9E-09 4.1E-14 105.0 28.4 212 380-600 337-560 (606)
56 COG3071 HemY Uncharacterized e 99.3 7.2E-09 1.6E-13 99.0 31.1 283 215-566 97-388 (400)
57 KOG1173 Anaphase-promoting com 99.3 7.4E-09 1.6E-13 102.9 31.9 477 43-577 18-523 (611)
58 COG2956 Predicted N-acetylgluc 99.3 2.1E-09 4.5E-14 99.3 25.3 209 154-363 49-278 (389)
59 KOG4318 Bicoid mRNA stability 99.3 4.2E-09 9.1E-14 109.7 30.2 248 126-384 11-286 (1088)
60 KOG4162 Predicted calmodulin-b 99.3 1.1E-08 2.4E-13 105.4 32.4 420 136-569 319-784 (799)
61 KOG1840 Kinesin light chain [C 99.3 2.2E-09 4.8E-14 110.0 26.2 129 439-567 327-478 (508)
62 COG2956 Predicted N-acetylgluc 99.3 1.2E-08 2.7E-13 94.3 27.8 294 215-576 48-355 (389)
63 TIGR02521 type_IV_pilW type IV 99.3 2.1E-09 4.5E-14 102.9 24.2 199 334-567 31-231 (234)
64 COG3071 HemY Uncharacterized e 99.2 5.1E-08 1.1E-12 93.3 29.7 94 205-299 121-214 (400)
65 KOG1129 TPR repeat-containing 99.2 8.1E-10 1.8E-14 101.9 16.2 225 307-569 227-459 (478)
66 KOG1156 N-terminal acetyltrans 99.2 5.6E-07 1.2E-11 91.3 37.2 220 106-331 11-247 (700)
67 KOG1156 N-terminal acetyltrans 99.2 6.1E-07 1.3E-11 91.1 36.9 451 74-563 10-506 (700)
68 PF13041 PPR_2: PPR repeat fam 99.2 8.8E-11 1.9E-15 80.6 6.6 50 200-249 1-50 (50)
69 KOG1174 Anaphase-promoting com 99.2 7.5E-07 1.6E-11 85.4 34.8 395 139-541 96-507 (564)
70 PF13041 PPR_2: PPR repeat fam 99.1 1.1E-10 2.5E-15 80.1 6.2 50 332-381 1-50 (50)
71 KOG2376 Signal recognition par 99.1 8.6E-07 1.9E-11 89.0 35.1 440 50-500 21-518 (652)
72 KOG1840 Kinesin light chain [C 99.1 6.5E-08 1.4E-12 99.4 28.0 96 438-533 368-478 (508)
73 KOG3617 WD40 and TPR repeat-co 99.1 3.8E-06 8.3E-11 87.3 40.0 49 520-569 1306-1360(1416)
74 TIGR02521 type_IV_pilW type IV 99.1 1.9E-08 4.2E-13 96.1 22.8 192 203-397 32-231 (234)
75 KOG3785 Uncharacterized conser 99.1 1.5E-06 3.2E-11 81.7 32.7 439 79-568 29-490 (557)
76 PRK12370 invasion protein regu 99.1 2.9E-08 6.2E-13 107.1 25.1 174 185-362 318-501 (553)
77 COG3063 PilF Tfp pilus assembl 99.1 1E-08 2.2E-13 90.7 17.2 155 412-570 43-204 (250)
78 KOG1129 TPR repeat-containing 99.1 5E-09 1.1E-13 96.8 15.1 230 276-541 227-465 (478)
79 PRK12370 invasion protein regu 99.1 3.4E-08 7.4E-13 106.5 23.7 207 319-568 320-535 (553)
80 KOG4162 Predicted calmodulin-b 99.0 2E-06 4.2E-11 89.3 34.6 102 436-540 683-789 (799)
81 KOG3616 Selective LIM binding 99.0 2.7E-06 5.9E-11 87.2 33.8 217 311-563 714-932 (1636)
82 KOG1174 Anaphase-promoting com 99.0 4.7E-06 1E-10 80.1 33.4 386 171-568 97-500 (564)
83 KOG1127 TPR repeat-containing 99.0 1.4E-06 2.9E-11 92.6 32.6 538 23-567 474-1103(1238)
84 KOG0985 Vesicle coat protein c 99.0 3.3E-05 7.1E-10 82.4 41.9 272 18-299 407-751 (1666)
85 PF12569 NARP1: NMDA receptor- 99.0 2.1E-07 4.5E-12 97.0 24.4 282 278-567 10-333 (517)
86 PRK11189 lipoprotein NlpI; Pro 98.9 1.5E-07 3.2E-12 92.8 21.7 212 316-569 39-266 (296)
87 KOG0548 Molecular co-chaperone 98.9 1.7E-06 3.7E-11 86.2 28.4 391 148-568 10-455 (539)
88 PF12569 NARP1: NMDA receptor- 98.9 1.6E-05 3.5E-10 83.1 35.7 249 48-301 11-291 (517)
89 PF04733 Coatomer_E: Coatomer 98.9 1.5E-07 3.3E-12 91.2 19.2 219 307-567 39-264 (290)
90 KOG1125 TPR repeat-containing 98.9 1.6E-07 3.4E-12 94.1 19.0 220 344-567 295-526 (579)
91 COG3063 PilF Tfp pilus assembl 98.9 7.2E-07 1.6E-11 79.2 20.6 193 203-398 36-236 (250)
92 KOG4340 Uncharacterized conser 98.9 1E-05 2.2E-10 74.5 28.5 235 149-394 87-335 (459)
93 KOG3616 Selective LIM binding 98.9 3.7E-05 8.1E-10 79.1 35.1 199 144-358 619-848 (1636)
94 PRK11189 lipoprotein NlpI; Pro 98.8 2.1E-06 4.4E-11 84.8 25.8 91 174-266 67-161 (296)
95 KOG3617 WD40 and TPR repeat-co 98.8 5.3E-05 1.2E-09 79.1 35.3 376 43-463 728-1171(1416)
96 PRK04841 transcriptional regul 98.8 0.00011 2.4E-09 85.5 41.1 362 179-569 349-761 (903)
97 KOG1127 TPR repeat-containing 98.7 7.2E-05 1.6E-09 80.0 34.0 81 486-566 1051-1136(1238)
98 KOG0985 Vesicle coat protein c 98.7 0.00061 1.3E-08 73.2 40.5 347 4-395 951-1305(1666)
99 KOG0624 dsRNA-activated protei 98.7 2.9E-05 6.3E-10 73.0 26.5 180 202-399 38-219 (504)
100 PF04733 Coatomer_E: Coatomer 98.7 1E-06 2.2E-11 85.6 17.3 86 452-539 182-270 (290)
101 KOG0624 dsRNA-activated protei 98.7 4E-05 8.7E-10 72.1 26.5 315 139-499 37-367 (504)
102 cd05804 StaR_like StaR_like; a 98.7 8.4E-05 1.8E-09 76.2 32.3 85 311-395 122-212 (355)
103 KOG0548 Molecular co-chaperone 98.7 6E-05 1.3E-09 75.5 29.0 408 118-551 15-472 (539)
104 cd05804 StaR_like StaR_like; a 98.7 0.00012 2.5E-09 75.2 32.6 306 202-569 6-337 (355)
105 PRK10370 formate-dependent nit 98.6 8E-07 1.7E-11 81.4 13.5 119 449-570 51-175 (198)
106 PRK15359 type III secretion sy 98.6 1.8E-06 4E-11 74.7 14.9 107 440-549 27-136 (144)
107 KOG1128 Uncharacterized conser 98.6 2.4E-06 5.2E-11 88.1 17.8 217 306-572 401-620 (777)
108 KOG1125 TPR repeat-containing 98.5 2.5E-05 5.4E-10 78.8 21.7 234 312-561 294-564 (579)
109 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.6E-12 57.6 4.1 34 134-167 1-34 (34)
110 PRK15359 type III secretion sy 98.5 2.2E-06 4.7E-11 74.2 12.2 107 458-569 14-122 (144)
111 PRK04841 transcriptional regul 98.4 0.00044 9.5E-09 80.6 33.9 251 148-398 460-760 (903)
112 TIGR03302 OM_YfiO outer membra 98.4 2.5E-05 5.3E-10 74.7 19.3 184 333-568 32-232 (235)
113 KOG1914 mRNA cleavage and poly 98.4 0.0031 6.8E-08 63.5 36.5 124 71-199 19-165 (656)
114 PLN02789 farnesyltranstransfer 98.4 0.00013 2.8E-09 72.0 24.0 209 337-552 40-268 (320)
115 PF12854 PPR_1: PPR repeat 98.4 6.3E-07 1.4E-11 55.0 4.0 32 432-463 2-33 (34)
116 KOG1070 rRNA processing protei 98.3 7.3E-05 1.6E-09 82.8 21.7 221 173-396 1460-1698(1710)
117 KOG3081 Vesicle coat complex C 98.3 0.00032 6.9E-09 64.1 22.1 118 446-567 146-270 (299)
118 TIGR02552 LcrH_SycD type III s 98.3 1.3E-05 2.7E-10 69.1 12.1 100 469-568 12-114 (135)
119 KOG1070 rRNA processing protei 98.3 0.00014 2.9E-09 80.7 22.0 190 141-331 1459-1662(1710)
120 KOG3081 Vesicle coat complex C 98.3 0.0007 1.5E-08 61.9 22.8 238 54-298 21-268 (299)
121 PF07079 DUF1347: Protein of u 98.3 0.0063 1.4E-07 60.2 35.6 432 51-510 16-530 (549)
122 PRK10370 formate-dependent nit 98.3 0.00011 2.5E-09 67.2 18.3 105 435-542 71-181 (198)
123 PLN02789 farnesyltranstransfer 98.2 0.00033 7.2E-09 69.1 22.0 183 380-567 48-249 (320)
124 COG5010 TadD Flp pilus assembl 98.2 4.7E-05 1E-09 69.5 14.6 125 441-567 70-196 (257)
125 PRK14720 transcript cleavage f 98.2 0.00066 1.4E-08 74.8 26.0 45 506-550 224-268 (906)
126 KOG1128 Uncharacterized conser 98.2 4.1E-05 8.9E-10 79.3 15.6 206 177-397 404-615 (777)
127 COG5010 TadD Flp pilus assembl 98.2 9E-05 2E-09 67.7 16.1 126 436-563 99-226 (257)
128 COG4783 Putative Zn-dependent 98.2 0.0006 1.3E-08 68.0 22.8 219 128-363 209-454 (484)
129 PRK15363 pathogenicity island 98.2 1.9E-05 4.2E-10 67.0 10.8 98 472-569 34-133 (157)
130 PRK15179 Vi polysaccharide bio 98.2 9.3E-05 2E-09 80.6 18.6 133 433-568 82-217 (694)
131 TIGR03302 OM_YfiO outer membra 98.1 0.0002 4.2E-09 68.5 18.2 181 202-398 33-232 (235)
132 KOG3060 Uncharacterized conser 98.1 0.00027 5.8E-09 64.1 17.2 185 348-569 26-221 (289)
133 KOG2053 Mitochondrial inherita 98.1 0.03 6.4E-07 60.3 42.8 91 439-533 438-535 (932)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 8.6E-05 1.9E-09 74.7 14.0 123 438-565 170-294 (395)
135 TIGR02552 LcrH_SycD type III s 98.0 0.00014 3E-09 62.5 13.4 101 437-540 17-120 (135)
136 KOG0553 TPR repeat-containing 98.0 5.6E-05 1.2E-09 70.4 10.8 108 446-556 90-200 (304)
137 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.6E-10 50.2 4.5 34 203-236 1-34 (35)
138 KOG2053 Mitochondrial inherita 98.0 0.04 8.6E-07 59.4 38.7 402 152-573 21-507 (932)
139 PRK15179 Vi polysaccharide bio 98.0 0.0016 3.5E-08 71.1 23.2 142 233-376 82-229 (694)
140 KOG1914 mRNA cleavage and poly 98.0 0.027 5.9E-07 57.1 33.9 425 137-565 17-536 (656)
141 PRK14720 transcript cleavage f 98.0 0.0013 2.7E-08 72.7 21.8 218 134-380 24-268 (906)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00027 5.8E-09 71.2 15.5 124 174-299 172-295 (395)
143 PF09976 TPR_21: Tetratricopep 97.9 0.00034 7.4E-09 60.8 14.1 126 438-565 13-144 (145)
144 COG4783 Putative Zn-dependent 97.9 0.00016 3.5E-09 71.8 13.2 119 446-566 315-435 (484)
145 PF13414 TPR_11: TPR repeat; P 97.9 3.3E-05 7.2E-10 57.2 6.2 65 504-568 2-67 (69)
146 PF13812 PPR_3: Pentatricopept 97.9 2.5E-05 5.5E-10 48.3 4.4 33 203-235 2-34 (34)
147 TIGR00756 PPR pentatricopeptid 97.8 2.8E-05 6.1E-10 48.4 4.3 34 335-368 1-34 (35)
148 KOG0553 TPR repeat-containing 97.8 6E-05 1.3E-09 70.2 7.8 93 480-576 88-182 (304)
149 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00022 4.9E-09 59.6 11.0 93 476-568 5-105 (119)
150 cd00189 TPR Tetratricopeptide 97.8 0.00016 3.6E-09 57.3 9.8 92 476-567 3-96 (100)
151 KOG3060 Uncharacterized conser 97.8 0.0058 1.3E-07 55.7 19.8 181 216-399 26-221 (289)
152 PF13432 TPR_16: Tetratricopep 97.8 5.8E-05 1.2E-09 55.1 6.1 59 511-569 3-61 (65)
153 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00045 9.7E-09 57.7 12.4 105 438-542 3-113 (119)
154 COG4235 Cytochrome c biogenesi 97.8 0.00026 5.7E-09 66.5 11.3 109 469-577 151-265 (287)
155 PF09976 TPR_21: Tetratricopep 97.7 0.002 4.4E-08 55.9 15.4 123 204-328 14-143 (145)
156 PF13812 PPR_3: Pentatricopept 97.7 6.4E-05 1.4E-09 46.4 4.2 33 335-367 2-34 (34)
157 PF12895 Apc3: Anaphase-promot 97.7 5.7E-05 1.2E-09 58.5 4.2 55 508-563 28-82 (84)
158 PLN03088 SGT1, suppressor of 97.6 0.0004 8.8E-09 70.2 11.1 107 443-552 8-117 (356)
159 PRK02603 photosystem I assembl 97.6 0.00062 1.3E-08 61.2 11.1 82 473-554 35-121 (172)
160 PLN03088 SGT1, suppressor of 97.6 0.0011 2.5E-08 67.0 13.1 95 414-512 12-110 (356)
161 CHL00033 ycf3 photosystem I as 97.5 0.00078 1.7E-08 60.3 10.5 94 472-565 34-139 (168)
162 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.6E-09 44.0 3.5 31 203-233 1-31 (31)
163 KOG0550 Molecular chaperone (D 97.5 0.017 3.6E-07 56.6 19.2 88 482-569 258-351 (486)
164 KOG2041 WD40 repeat protein [G 97.5 0.2 4.4E-06 52.5 32.8 229 55-336 677-911 (1189)
165 PF14938 SNAP: Soluble NSF att 97.5 0.031 6.7E-07 54.8 21.3 62 336-397 157-224 (282)
166 PRK02603 photosystem I assembl 97.4 0.0047 1E-07 55.5 14.3 112 438-553 36-165 (172)
167 PF12895 Apc3: Anaphase-promot 97.4 0.00044 9.5E-09 53.5 6.4 82 450-531 2-84 (84)
168 PF14559 TPR_19: Tetratricopep 97.4 0.00019 4E-09 53.0 4.2 53 516-568 2-54 (68)
169 COG3898 Uncharacterized membra 97.4 0.14 3.1E-06 50.0 28.6 289 105-398 84-392 (531)
170 PRK10153 DNA-binding transcrip 97.4 0.0037 7.9E-08 66.2 15.2 135 432-570 332-484 (517)
171 PRK10153 DNA-binding transcrip 97.4 0.0068 1.5E-07 64.2 17.1 87 454-540 401-488 (517)
172 PRK15363 pathogenicity island 97.4 0.003 6.5E-08 53.9 11.6 95 438-535 36-133 (157)
173 cd00189 TPR Tetratricopeptide 97.4 0.0021 4.5E-08 50.7 10.4 95 440-537 3-100 (100)
174 PF01535 PPR: PPR repeat; Int 97.4 0.00022 4.7E-09 42.9 3.4 29 336-364 2-30 (31)
175 PF13371 TPR_9: Tetratricopept 97.4 0.00054 1.2E-08 51.3 6.2 58 513-570 3-60 (73)
176 PF08579 RPM2: Mitochondrial r 97.3 0.0033 7.1E-08 49.7 10.2 87 337-448 28-115 (120)
177 COG4700 Uncharacterized protei 97.3 0.004 8.6E-08 53.8 11.3 130 434-566 86-220 (251)
178 PF13432 TPR_16: Tetratricopep 97.3 0.00096 2.1E-08 48.6 6.7 61 479-539 3-65 (65)
179 CHL00033 ycf3 photosystem I as 97.3 0.0087 1.9E-07 53.5 14.2 94 202-296 35-137 (168)
180 PF14938 SNAP: Soluble NSF att 97.3 0.015 3.3E-07 57.0 16.7 150 143-303 97-268 (282)
181 PF08579 RPM2: Mitochondrial r 97.3 0.0039 8.4E-08 49.3 9.7 77 305-381 27-116 (120)
182 PF12688 TPR_5: Tetratrico pep 97.2 0.014 3E-07 48.1 13.2 107 207-313 6-116 (120)
183 PF13431 TPR_17: Tetratricopep 97.2 0.00023 5.1E-09 43.5 1.9 33 528-560 2-34 (34)
184 KOG2041 WD40 repeat protein [G 97.2 0.44 9.6E-06 50.1 29.0 202 137-359 689-903 (1189)
185 COG4700 Uncharacterized protei 97.1 0.015 3.2E-07 50.4 12.5 107 463-569 79-190 (251)
186 KOG1130 Predicted G-alpha GTPa 97.1 0.016 3.4E-07 56.6 14.1 284 210-533 25-343 (639)
187 PF04840 Vps16_C: Vps16, C-ter 97.1 0.34 7.5E-06 47.9 27.1 104 276-391 181-284 (319)
188 PRK15331 chaperone protein Sic 97.1 0.0043 9.4E-08 53.2 9.3 100 468-567 31-133 (165)
189 PRK10866 outer membrane biogen 97.1 0.11 2.3E-06 49.5 19.8 57 339-395 180-238 (243)
190 PF04840 Vps16_C: Vps16, C-ter 97.1 0.36 7.7E-06 47.8 26.6 109 239-359 179-287 (319)
191 PF05843 Suf: Suppressor of fo 97.1 0.0077 1.7E-07 58.8 12.2 131 405-538 2-140 (280)
192 PF14559 TPR_19: Tetratricopep 97.1 0.00098 2.1E-08 49.0 4.6 48 449-499 3-51 (68)
193 PF13414 TPR_11: TPR repeat; P 97.0 0.0016 3.4E-08 48.1 5.5 64 473-536 3-69 (69)
194 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.43 9.4E-06 47.6 29.5 87 62-152 30-121 (660)
195 PF10037 MRP-S27: Mitochondria 97.0 0.0093 2E-07 60.6 12.2 113 173-285 68-186 (429)
196 PF12688 TPR_5: Tetratrico pep 97.0 0.011 2.3E-07 48.8 10.3 85 479-563 7-99 (120)
197 PF05843 Suf: Suppressor of fo 97.0 0.023 4.9E-07 55.5 14.5 126 371-499 3-133 (280)
198 PRK10803 tol-pal system protei 97.0 0.0056 1.2E-07 58.6 9.9 92 476-567 146-245 (263)
199 COG3898 Uncharacterized membra 96.9 0.47 1E-05 46.5 29.7 287 248-577 95-399 (531)
200 PF07079 DUF1347: Protein of u 96.9 0.61 1.3E-05 46.8 33.2 452 6-478 5-530 (549)
201 PF13428 TPR_14: Tetratricopep 96.9 0.0021 4.6E-08 42.2 4.4 42 506-547 2-43 (44)
202 PF06239 ECSIT: Evolutionarily 96.8 0.021 4.5E-07 51.3 11.6 32 383-414 66-97 (228)
203 KOG1130 Predicted G-alpha GTPa 96.8 0.015 3.4E-07 56.6 11.1 204 179-396 25-262 (639)
204 PRK10866 outer membrane biogen 96.7 0.27 5.9E-06 46.7 19.4 57 207-263 180-238 (243)
205 PF10037 MRP-S27: Mitochondria 96.7 0.018 3.8E-07 58.6 11.8 110 308-417 71-186 (429)
206 KOG0550 Molecular chaperone (D 96.7 0.012 2.5E-07 57.6 9.8 230 435-675 166-426 (486)
207 PRK10803 tol-pal system protei 96.7 0.034 7.3E-07 53.3 13.0 103 438-540 144-252 (263)
208 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0067 1.5E-07 61.0 8.4 65 504-568 74-141 (453)
209 PF13371 TPR_9: Tetratricopept 96.7 0.0067 1.4E-07 45.3 6.4 63 481-543 3-67 (73)
210 PF06239 ECSIT: Evolutionarily 96.6 0.031 6.8E-07 50.2 11.3 131 324-471 35-173 (228)
211 PF13424 TPR_12: Tetratricopep 96.6 0.0033 7.2E-08 47.7 4.5 62 506-567 6-74 (78)
212 KOG1538 Uncharacterized conser 96.6 0.31 6.8E-06 50.7 19.1 155 128-299 623-800 (1081)
213 KOG1538 Uncharacterized conser 96.5 0.34 7.4E-06 50.5 18.7 41 218-261 616-656 (1081)
214 KOG2796 Uncharacterized conser 96.5 0.15 3.1E-06 47.1 14.4 134 204-363 179-315 (366)
215 COG4235 Cytochrome c biogenesi 96.4 0.12 2.6E-06 49.1 14.3 109 434-546 153-267 (287)
216 KOG2796 Uncharacterized conser 96.4 0.23 5E-06 45.9 15.1 59 338-396 181-239 (366)
217 PF03704 BTAD: Bacterial trans 96.3 0.065 1.4E-06 46.5 11.5 107 447-567 16-124 (146)
218 PF04184 ST7: ST7 protein; In 96.2 0.58 1.3E-05 47.7 18.5 181 345-540 179-381 (539)
219 PF13525 YfiO: Outer membrane 96.2 0.28 6E-06 45.3 15.4 60 207-266 10-71 (203)
220 KOG2280 Vacuolar assembly/sort 96.0 2.9 6.3E-05 44.9 29.2 131 230-361 425-573 (829)
221 PF13281 DUF4071: Domain of un 95.8 1.8 3.9E-05 43.4 20.0 35 504-538 304-338 (374)
222 PF13424 TPR_12: Tetratricopep 95.8 0.016 3.4E-07 44.0 4.5 28 506-533 47-74 (78)
223 PF12921 ATP13: Mitochondrial 95.7 0.16 3.4E-06 42.4 10.5 99 368-484 1-99 (126)
224 PRK11906 transcriptional regul 95.7 0.18 3.9E-06 51.1 12.7 62 504-565 337-398 (458)
225 KOG0543 FKBP-type peptidyl-pro 95.7 0.15 3.3E-06 50.3 11.7 124 445-568 216-355 (397)
226 PRK11906 transcriptional regul 95.6 1.6 3.6E-05 44.5 18.9 140 420-563 276-431 (458)
227 KOG0543 FKBP-type peptidyl-pro 95.6 0.044 9.4E-07 54.0 7.7 90 479-568 214-320 (397)
228 PF13525 YfiO: Outer membrane 95.6 1.3 2.8E-05 40.9 17.3 46 445-490 149-195 (203)
229 PF13281 DUF4071: Domain of un 95.5 1.9 4E-05 43.3 18.8 33 347-379 195-227 (374)
230 PRK15331 chaperone protein Sic 95.5 0.15 3.3E-06 44.0 9.8 92 443-538 43-137 (165)
231 PF09205 DUF1955: Domain of un 95.5 0.52 1.1E-05 38.6 12.0 83 487-571 70-152 (161)
232 COG1729 Uncharacterized protei 95.4 0.19 4.1E-06 47.1 10.7 102 439-541 144-251 (262)
233 KOG4555 TPR repeat-containing 95.2 0.15 3.1E-06 41.6 8.0 89 481-569 51-145 (175)
234 COG3118 Thioredoxin domain-con 95.1 1.3 2.7E-05 42.2 15.2 120 445-568 142-265 (304)
235 KOG1941 Acetylcholine receptor 95.1 3.6 7.9E-05 40.2 18.7 261 274-560 45-352 (518)
236 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.17 3.6E-06 51.3 9.8 63 472-534 74-141 (453)
237 KOG2280 Vacuolar assembly/sort 94.9 6.9 0.00015 42.2 25.5 90 76-167 441-534 (829)
238 smart00299 CLH Clathrin heavy 94.8 1.4 3.1E-05 37.7 14.3 123 374-516 12-136 (140)
239 COG1729 Uncharacterized protei 94.8 0.19 4.2E-06 47.1 9.0 93 475-570 144-246 (262)
240 PF08631 SPO22: Meiosis protei 94.8 4.4 9.5E-05 39.6 26.3 62 336-398 86-150 (278)
241 PF13512 TPR_18: Tetratricopep 94.8 0.86 1.9E-05 38.5 11.9 54 446-499 19-73 (142)
242 KOG1920 IkappaB kinase complex 94.7 2.7 5.9E-05 47.6 18.5 74 312-393 974-1050(1265)
243 PF12921 ATP13: Mitochondrial 94.5 0.43 9.3E-06 39.8 9.7 94 436-547 1-96 (126)
244 PF00515 TPR_1: Tetratricopept 94.4 0.077 1.7E-06 32.3 3.8 32 506-537 2-33 (34)
245 PF13512 TPR_18: Tetratricopep 94.3 1.1 2.5E-05 37.8 11.7 65 476-540 13-82 (142)
246 PF04053 Coatomer_WDAD: Coatom 94.3 1.7 3.7E-05 45.3 15.6 158 210-394 269-427 (443)
247 PF03704 BTAD: Bacterial trans 94.3 0.43 9.4E-06 41.3 9.8 70 204-274 64-138 (146)
248 PF07719 TPR_2: Tetratricopept 94.2 0.12 2.5E-06 31.4 4.5 32 507-538 3-34 (34)
249 KOG3941 Intermediate in Toll s 94.1 1.5 3.3E-05 41.1 12.9 123 325-464 56-186 (406)
250 PF07035 Mic1: Colon cancer-as 94.0 3.9 8.5E-05 35.8 14.8 130 222-357 14-143 (167)
251 KOG1585 Protein required for f 93.9 5.3 0.00012 36.9 17.8 113 450-563 123-251 (308)
252 KOG2610 Uncharacterized conser 93.8 1.7 3.7E-05 41.8 13.0 146 214-360 115-273 (491)
253 KOG2610 Uncharacterized conser 93.8 0.62 1.3E-05 44.7 10.0 153 420-575 121-283 (491)
254 COG3118 Thioredoxin domain-con 93.7 4.4 9.5E-05 38.7 15.4 14 342-355 244-257 (304)
255 KOG4234 TPR repeat-containing 93.7 0.26 5.6E-06 43.5 6.9 87 482-568 104-197 (271)
256 COG0457 NrfG FOG: TPR repeat [ 93.7 6 0.00013 36.8 24.5 120 446-568 139-265 (291)
257 KOG1585 Protein required for f 93.5 5.8 0.00013 36.7 15.1 81 141-228 32-117 (308)
258 COG4105 ComL DNA uptake lipopr 93.5 6.7 0.00015 36.7 18.2 62 478-539 172-238 (254)
259 COG5107 RNA14 Pre-mRNA 3'-end 93.4 10 0.00022 38.5 31.7 77 137-213 39-120 (660)
260 KOG2066 Vacuolar assembly/sort 93.3 15 0.00032 40.1 27.9 74 148-221 364-442 (846)
261 PF10300 DUF3808: Protein of u 93.0 2.8 6E-05 44.3 14.8 123 142-265 231-375 (468)
262 KOG4555 TPR repeat-containing 92.9 0.76 1.6E-05 37.6 7.9 89 446-537 52-147 (175)
263 PF04053 Coatomer_WDAD: Coatom 92.9 3 6.5E-05 43.5 14.6 132 140-296 295-426 (443)
264 PF10300 DUF3808: Protein of u 92.7 7.6 0.00016 41.1 17.6 115 450-567 246-375 (468)
265 KOG3941 Intermediate in Toll s 92.5 1.2 2.6E-05 41.8 9.7 89 200-288 65-174 (406)
266 KOG1941 Acetylcholine receptor 92.4 1.1 2.3E-05 43.7 9.4 224 343-566 15-273 (518)
267 PF13170 DUF4003: Protein of u 92.3 4.5 9.8E-05 39.6 14.1 153 104-282 61-227 (297)
268 PF13176 TPR_7: Tetratricopept 91.8 0.28 6E-06 30.3 3.4 26 541-566 1-26 (36)
269 KOG2114 Vacuolar assembly/sort 91.4 25 0.00054 38.8 19.0 46 309-354 711-756 (933)
270 PRK09687 putative lyase; Provi 91.3 15 0.00033 35.7 25.7 221 37-265 34-262 (280)
271 PF09205 DUF1955: Domain of un 91.2 7.7 0.00017 32.1 13.3 66 203-269 87-152 (161)
272 PF13181 TPR_8: Tetratricopept 91.2 0.38 8.2E-06 29.1 3.6 30 507-536 3-32 (34)
273 COG4649 Uncharacterized protei 91.1 5 0.00011 34.9 11.1 128 438-567 60-195 (221)
274 PF08631 SPO22: Meiosis protei 90.4 18 0.0004 35.2 24.5 157 406-566 86-273 (278)
275 PF09613 HrpB1_HrpK: Bacterial 90.3 11 0.00025 32.6 13.0 119 438-561 8-131 (160)
276 PRK09687 putative lyase; Provi 90.2 19 0.00041 35.1 27.1 18 332-349 204-221 (280)
277 smart00299 CLH Clathrin heavy 90.1 11 0.00024 32.1 15.8 84 108-197 12-95 (140)
278 COG4649 Uncharacterized protei 90.0 6.1 0.00013 34.4 10.7 87 212-298 104-193 (221)
279 PF07035 Mic1: Colon cancer-as 89.9 13 0.00028 32.6 13.5 133 126-266 15-149 (167)
280 COG3629 DnrI DNA-binding trans 89.8 1.5 3.2E-05 42.0 7.9 63 505-567 153-215 (280)
281 PF13428 TPR_14: Tetratricopep 89.8 1.3 2.8E-05 28.8 5.4 28 204-231 3-30 (44)
282 PF13176 TPR_7: Tetratricopept 89.7 0.55 1.2E-05 29.0 3.4 27 507-533 1-27 (36)
283 PF07719 TPR_2: Tetratricopept 89.1 0.65 1.4E-05 27.9 3.5 30 540-569 2-31 (34)
284 COG4785 NlpI Lipoprotein NlpI, 89.1 17 0.00038 33.0 14.0 83 51-133 75-161 (297)
285 COG0457 NrfG FOG: TPR repeat [ 88.6 20 0.00043 33.1 22.1 201 303-537 59-268 (291)
286 KOG1258 mRNA processing protei 88.6 37 0.00079 36.1 26.9 123 436-560 296-421 (577)
287 COG4105 ComL DNA uptake lipopr 88.3 23 0.00049 33.4 19.1 178 207-395 39-230 (254)
288 KOG4234 TPR repeat-containing 88.1 8.2 0.00018 34.5 10.5 101 446-548 104-211 (271)
289 PF09613 HrpB1_HrpK: Bacterial 88.1 2.9 6.3E-05 36.1 7.7 54 485-538 22-77 (160)
290 TIGR02508 type_III_yscG type I 88.0 9.1 0.0002 29.9 9.3 82 276-373 25-106 (115)
291 PF02259 FAT: FAT domain; Int 87.9 33 0.00071 34.7 21.7 115 436-551 145-304 (352)
292 TIGR02561 HrpB1_HrpK type III 87.9 2.6 5.6E-05 35.8 7.1 54 516-569 21-74 (153)
293 KOG1920 IkappaB kinase complex 87.9 59 0.0013 37.7 25.3 76 481-563 973-1050(1265)
294 KOG4648 Uncharacterized conser 87.9 1.9 4.2E-05 41.6 7.1 93 445-540 105-200 (536)
295 COG2976 Uncharacterized protei 87.6 21 0.00045 32.1 15.0 90 444-536 96-190 (207)
296 PF00515 TPR_1: Tetratricopept 87.5 0.98 2.1E-05 27.2 3.5 30 540-569 2-31 (34)
297 PF04097 Nic96: Nup93/Nic96; 87.4 20 0.00044 39.4 15.8 62 170-231 110-181 (613)
298 KOG2114 Vacuolar assembly/sort 87.3 53 0.0011 36.4 29.1 179 143-332 337-519 (933)
299 PF13170 DUF4003: Protein of u 87.1 30 0.00065 34.0 15.2 130 351-481 79-225 (297)
300 PRK11619 lytic murein transgly 87.1 54 0.0012 36.4 30.5 310 211-532 42-373 (644)
301 PF10602 RPN7: 26S proteasome 87.0 10 0.00022 34.0 11.0 95 203-299 37-140 (177)
302 KOG4648 Uncharacterized conser 86.8 1.4 3E-05 42.6 5.5 89 480-568 104-194 (536)
303 KOG1586 Protein required for f 86.6 27 0.00058 32.3 15.7 61 480-540 161-230 (288)
304 PF00637 Clathrin: Region in C 86.5 1.5 3.3E-05 37.7 5.4 53 209-261 14-66 (143)
305 COG3629 DnrI DNA-binding trans 86.4 4.8 0.0001 38.6 9.0 72 173-244 155-234 (280)
306 PF13431 TPR_17: Tetratricopep 85.9 0.77 1.7E-05 27.9 2.3 24 470-493 9-33 (34)
307 KOG0890 Protein kinase of the 85.8 1.1E+02 0.0023 38.6 24.3 307 244-570 1390-1733(2382)
308 PF11207 DUF2989: Protein of u 85.5 10 0.00022 34.3 9.9 80 413-493 116-198 (203)
309 PF13374 TPR_10: Tetratricopep 84.7 2 4.4E-05 27.2 4.2 26 508-533 5-30 (42)
310 PF13174 TPR_6: Tetratricopept 84.7 1.7 3.6E-05 25.8 3.5 25 543-567 4-28 (33)
311 PRK12798 chemotaxis protein; R 84.5 50 0.0011 33.6 19.4 126 440-566 188-322 (421)
312 PF04190 DUF410: Protein of un 83.9 42 0.00092 32.3 18.1 55 183-248 2-60 (260)
313 PF00637 Clathrin: Region in C 83.7 2.6 5.6E-05 36.2 5.6 88 9-100 11-98 (143)
314 PRK10941 hypothetical protein; 83.7 5.8 0.00013 38.2 8.3 64 507-570 183-246 (269)
315 PF13174 TPR_6: Tetratricopept 83.6 1.5 3.2E-05 26.0 2.9 31 508-538 3-33 (33)
316 PF02284 COX5A: Cytochrome c o 83.4 20 0.00044 28.2 9.4 60 420-481 28-87 (108)
317 PF10345 Cohesin_load: Cohesin 83.3 79 0.0017 35.0 32.6 176 123-299 39-252 (608)
318 COG2976 Uncharacterized protei 82.9 35 0.00076 30.7 14.0 88 277-364 94-189 (207)
319 COG4785 NlpI Lipoprotein NlpI, 82.9 8.1 0.00018 35.1 8.1 53 508-560 102-154 (297)
320 PF13374 TPR_10: Tetratricopep 82.9 1.8 3.9E-05 27.4 3.3 28 540-567 3-30 (42)
321 PRK15180 Vi polysaccharide bio 82.6 11 0.00025 38.3 9.9 85 483-567 333-419 (831)
322 PF10602 RPN7: 26S proteasome 82.6 12 0.00026 33.5 9.4 98 141-263 37-139 (177)
323 PF02259 FAT: FAT domain; Int 82.3 60 0.0013 32.8 20.9 62 169-230 144-212 (352)
324 COG3947 Response regulator con 82.1 50 0.0011 31.8 14.3 59 509-567 283-341 (361)
325 PF13181 TPR_8: Tetratricopept 82.1 2.6 5.6E-05 25.3 3.6 29 540-568 2-30 (34)
326 PF04190 DUF410: Protein of un 81.1 54 0.0012 31.5 18.3 28 271-298 89-116 (260)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 81.0 12 0.00026 29.0 7.3 60 420-481 25-84 (103)
328 PF11207 DUF2989: Protein of u 81.0 8.3 0.00018 34.8 7.6 75 484-560 118-199 (203)
329 PF07721 TPR_4: Tetratricopept 80.7 1.9 4.2E-05 24.2 2.4 23 541-563 3-25 (26)
330 KOG0276 Vesicle coat complex C 80.6 17 0.00037 38.3 10.5 130 142-296 616-745 (794)
331 COG4455 ImpE Protein of avirul 80.2 6.3 0.00014 35.8 6.5 66 475-540 3-70 (273)
332 smart00028 TPR Tetratricopepti 80.1 3.9 8.5E-05 23.3 4.0 29 508-536 4-32 (34)
333 KOG0545 Aryl-hydrocarbon recep 78.9 43 0.00092 31.3 11.3 63 507-569 232-294 (329)
334 PF14853 Fis1_TPR_C: Fis1 C-te 78.7 8.3 0.00018 26.3 5.3 32 510-541 6-37 (53)
335 cd00923 Cyt_c_Oxidase_Va Cytoc 78.2 15 0.00032 28.6 7.0 61 218-279 23-83 (103)
336 KOG4642 Chaperone-dependent E3 77.9 6.7 0.00015 36.2 6.1 80 487-566 24-105 (284)
337 KOG1258 mRNA processing protei 77.7 1E+02 0.0022 32.9 35.1 104 447-553 376-489 (577)
338 PF04184 ST7: ST7 protein; In 77.4 97 0.0021 32.4 18.2 56 209-267 175-230 (539)
339 PF04097 Nic96: Nup93/Nic96; 76.8 1.3E+02 0.0027 33.4 17.3 43 73-116 113-158 (613)
340 TIGR02561 HrpB1_HrpK type III 76.4 48 0.0011 28.4 11.2 20 312-331 53-72 (153)
341 KOG2063 Vacuolar assembly/sort 75.3 1.6E+02 0.0034 33.7 22.2 57 44-100 310-374 (877)
342 KOG0276 Vesicle coat complex C 74.1 31 0.00067 36.6 10.3 46 53-100 649-694 (794)
343 PF07721 TPR_4: Tetratricopept 73.0 6.5 0.00014 22.0 3.2 21 144-164 5-25 (26)
344 PF02284 COX5A: Cytochrome c o 72.7 16 0.00034 28.8 6.0 47 220-266 28-74 (108)
345 KOG4570 Uncharacterized conser 71.9 20 0.00043 34.6 7.7 50 217-266 115-164 (418)
346 PF06552 TOM20_plant: Plant sp 71.9 17 0.00036 32.2 6.8 33 521-553 51-83 (186)
347 TIGR03504 FimV_Cterm FimV C-te 71.8 6.5 0.00014 25.6 3.3 26 543-568 3-28 (44)
348 KOG1308 Hsp70-interacting prot 71.3 2.8 6.1E-05 40.7 2.2 89 486-574 127-217 (377)
349 PF14561 TPR_20: Tetratricopep 70.6 12 0.00026 29.0 5.2 43 526-568 9-51 (90)
350 KOG4507 Uncharacterized conser 70.5 13 0.00028 39.0 6.7 101 447-550 617-721 (886)
351 PF10345 Cohesin_load: Cohesin 70.4 1.8E+02 0.0039 32.3 34.4 187 346-533 373-605 (608)
352 KOG4570 Uncharacterized conser 70.4 40 0.00086 32.7 9.3 103 363-466 58-164 (418)
353 PF10579 Rapsyn_N: Rapsyn N-te 69.3 14 0.00031 27.5 4.9 47 449-495 18-65 (80)
354 KOG1550 Extracellular protein 68.6 1.8E+02 0.004 31.7 23.1 45 253-298 228-275 (552)
355 smart00028 TPR Tetratricopepti 68.4 7.8 0.00017 21.9 3.2 28 540-567 2-29 (34)
356 COG4455 ImpE Protein of avirul 68.1 67 0.0015 29.5 9.8 72 440-514 4-81 (273)
357 PRK13800 putative oxidoreducta 68.1 2.5E+02 0.0053 33.0 29.0 92 271-362 788-880 (897)
358 TIGR02508 type_III_yscG type I 67.1 61 0.0013 25.6 9.9 61 179-242 47-107 (115)
359 KOG0890 Protein kinase of the 66.9 3.6E+02 0.0079 34.5 27.6 106 437-546 1670-1796(2382)
360 PF09477 Type_III_YscG: Bacter 66.7 65 0.0014 25.8 8.4 77 20-100 21-97 (116)
361 smart00386 HAT HAT (Half-A-TPR 66.3 10 0.00023 22.0 3.4 29 519-547 1-29 (33)
362 PF09986 DUF2225: Uncharacteri 65.5 30 0.00066 32.0 7.7 62 507-568 120-194 (214)
363 TIGR03504 FimV_Cterm FimV C-te 65.2 16 0.00035 23.7 4.1 24 208-231 5-28 (44)
364 PRK11619 lytic murein transgly 63.7 2.4E+02 0.0053 31.4 34.3 172 383-567 255-435 (644)
365 KOG3824 Huntingtin interacting 62.6 20 0.00043 34.4 5.8 58 484-541 127-186 (472)
366 cd08819 CARD_MDA5_2 Caspase ac 62.5 32 0.00069 26.3 5.7 65 124-190 21-85 (88)
367 PF04910 Tcf25: Transcriptiona 60.3 2E+02 0.0044 29.3 14.0 116 435-567 38-167 (360)
368 PF12862 Apc5: Anaphase-promot 60.2 23 0.0005 27.7 5.1 55 515-569 8-71 (94)
369 KOG2066 Vacuolar assembly/sort 59.8 2.9E+02 0.0062 30.8 25.8 100 48-152 363-467 (846)
370 COG0790 FOG: TPR repeat, SEL1 57.5 1.9E+02 0.0042 28.2 19.3 99 451-553 127-236 (292)
371 COG4976 Predicted methyltransf 57.2 17 0.00038 33.4 4.3 55 484-538 6-62 (287)
372 PF13934 ELYS: Nuclear pore co 56.7 1.7E+02 0.0038 27.4 11.8 154 43-214 28-184 (226)
373 PF13762 MNE1: Mitochondrial s 55.9 1.3E+02 0.0029 25.8 9.2 83 74-158 41-132 (145)
374 cd08819 CARD_MDA5_2 Caspase ac 55.7 55 0.0012 25.0 6.0 63 256-320 21-83 (88)
375 PF09477 Type_III_YscG: Bacter 54.2 1.1E+02 0.0025 24.5 10.7 55 120-175 21-75 (116)
376 PF14561 TPR_20: Tetratricopep 53.9 1E+02 0.0022 23.9 7.9 62 504-565 21-85 (90)
377 PF11846 DUF3366: Domain of un 53.9 50 0.0011 30.0 7.0 36 501-536 140-175 (193)
378 PF06552 TOM20_plant: Plant sp 53.3 1.7E+02 0.0036 26.2 9.9 27 489-515 96-123 (186)
379 KOG1550 Extracellular protein 52.7 3.4E+02 0.0075 29.6 22.5 79 452-536 454-540 (552)
380 KOG4279 Serine/threonine prote 52.4 2.7E+02 0.0059 30.8 12.5 48 481-538 352-399 (1226)
381 KOG4077 Cytochrome c oxidase, 52.1 98 0.0021 25.6 7.2 59 220-279 67-125 (149)
382 KOG0551 Hsp90 co-chaperone CNS 51.5 65 0.0014 31.7 7.3 92 474-565 82-179 (390)
383 KOG1586 Protein required for f 51.4 2.1E+02 0.0046 26.8 19.3 29 375-403 160-188 (288)
384 KOG1464 COP9 signalosome, subu 49.4 2.4E+02 0.0052 26.9 16.9 116 406-528 193-326 (440)
385 PF11846 DUF3366: Domain of un 48.9 62 0.0013 29.4 6.8 51 449-499 120-170 (193)
386 PF02631 RecX: RecX family; I 48.3 1.5E+02 0.0033 24.3 12.2 106 386-496 9-116 (121)
387 COG3947 Response regulator con 48.0 2.7E+02 0.0059 27.1 12.1 52 309-360 285-339 (361)
388 KOG4077 Cytochrome c oxidase, 48.0 1E+02 0.0022 25.5 6.8 59 420-480 67-125 (149)
389 PRK10941 hypothetical protein; 47.8 1.2E+02 0.0027 29.2 8.8 65 476-540 184-250 (269)
390 PF02847 MA3: MA3 domain; Int 47.8 1.5E+02 0.0032 23.9 8.3 22 309-330 8-29 (113)
391 KOG2063 Vacuolar assembly/sort 47.5 5E+02 0.011 30.0 16.1 26 43-68 506-531 (877)
392 KOG0376 Serine-threonine phosp 47.5 14 0.0003 37.9 2.4 95 444-541 11-108 (476)
393 PF12968 DUF3856: Domain of Un 46.9 1.1E+02 0.0023 25.1 6.7 60 507-566 57-127 (144)
394 KOG3364 Membrane protein invol 46.5 1E+02 0.0022 26.0 6.7 71 470-540 29-106 (149)
395 KOG0376 Serine-threonine phosp 46.1 21 0.00046 36.7 3.5 88 480-567 11-100 (476)
396 COG2912 Uncharacterized conser 45.9 74 0.0016 30.4 6.7 61 509-569 185-245 (269)
397 PF14863 Alkyl_sulf_dimr: Alky 45.8 96 0.0021 26.5 6.9 66 489-557 57-122 (141)
398 KOG0686 COP9 signalosome, subu 45.8 3.5E+02 0.0076 27.7 13.4 58 173-230 152-215 (466)
399 TIGR02270 conserved hypothetic 45.1 3.8E+02 0.0082 27.9 24.0 234 48-300 45-280 (410)
400 PRK13342 recombination factor 45.1 3.8E+02 0.0083 27.9 14.8 95 137-246 173-274 (413)
401 PF07163 Pex26: Pex26 protein; 43.8 2.3E+02 0.0049 27.4 9.4 55 209-265 90-146 (309)
402 COG1747 Uncharacterized N-term 43.7 4.2E+02 0.0092 28.1 22.0 59 337-398 69-127 (711)
403 PF13929 mRNA_stabil: mRNA sta 43.3 3.2E+02 0.007 26.6 18.2 88 436-523 163-256 (292)
404 COG4976 Predicted methyltransf 43.1 37 0.00081 31.3 4.1 55 447-504 5-61 (287)
405 COG1747 Uncharacterized N-term 43.0 4.3E+02 0.0094 28.0 20.8 160 302-464 65-232 (711)
406 PF14853 Fis1_TPR_C: Fis1 C-te 43.0 85 0.0018 21.5 4.9 36 207-244 6-41 (53)
407 PF13762 MNE1: Mitochondrial s 43.0 2.2E+02 0.0047 24.5 10.5 100 129-250 26-128 (145)
408 cd08326 CARD_CASP9 Caspase act 42.7 65 0.0014 24.6 4.9 33 185-217 44-76 (84)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 42.6 1.6E+02 0.0035 24.5 7.7 42 523-564 81-124 (126)
410 PF11663 Toxin_YhaV: Toxin wit 42.3 30 0.00066 28.9 3.1 31 214-246 107-137 (140)
411 cd08326 CARD_CASP9 Caspase act 40.5 81 0.0018 24.1 5.1 31 319-349 46-76 (84)
412 KOG2471 TPR repeat-containing 40.5 4.2E+02 0.0091 27.9 11.2 239 361-604 9-311 (696)
413 PF10366 Vps39_1: Vacuolar sor 40.3 2E+02 0.0043 23.2 8.7 28 203-230 40-67 (108)
414 PF02184 HAT: HAT (Half-A-TPR) 40.2 60 0.0013 19.4 3.3 26 520-546 2-27 (32)
415 COG0735 Fur Fe2+/Zn2+ uptake r 39.1 1.9E+02 0.0042 24.8 7.9 64 224-288 8-71 (145)
416 PF07575 Nucleopor_Nup85: Nup8 38.9 5.6E+02 0.012 28.1 21.6 72 322-395 393-464 (566)
417 PF12862 Apc5: Anaphase-promot 38.6 1.5E+02 0.0033 23.0 6.7 23 511-533 47-69 (94)
418 KOG2659 LisH motif-containing 38.5 3.3E+02 0.0072 25.4 9.8 97 433-532 22-130 (228)
419 KOG2034 Vacuolar sorting prote 38.4 6.5E+02 0.014 28.7 26.8 256 147-419 365-643 (911)
420 PF10366 Vps39_1: Vacuolar sor 37.7 1.7E+02 0.0037 23.6 6.9 27 336-362 41-67 (108)
421 PRK10564 maltose regulon perip 37.1 66 0.0014 31.2 5.0 38 204-241 259-296 (303)
422 PF08311 Mad3_BUB1_I: Mad3/BUB 35.2 1.5E+02 0.0033 24.7 6.4 52 44-97 68-124 (126)
423 PF10255 Paf67: RNA polymerase 35.1 2.3E+02 0.0051 29.2 8.8 56 174-229 125-191 (404)
424 PF11848 DUF3368: Domain of un 35.1 1.4E+02 0.0029 19.9 5.2 31 214-244 14-44 (48)
425 PRK15180 Vi polysaccharide bio 34.3 5.7E+02 0.012 26.8 26.9 111 119-231 303-420 (831)
426 PF14689 SPOB_a: Sensor_kinase 34.2 63 0.0014 22.9 3.4 29 202-230 23-51 (62)
427 KOG4567 GTPase-activating prot 34.0 4.5E+02 0.0097 25.8 9.8 78 257-335 263-350 (370)
428 COG5108 RPO41 Mitochondrial DN 33.9 2.2E+02 0.0047 31.0 8.4 23 145-167 33-55 (1117)
429 KOG4507 Uncharacterized conser 33.0 1.7E+02 0.0037 31.3 7.4 135 434-570 568-707 (886)
430 PHA02875 ankyrin repeat protei 32.9 5.7E+02 0.012 26.4 14.3 231 125-361 15-265 (413)
431 cd00280 TRFH Telomeric Repeat 32.9 1.5E+02 0.0032 26.6 6.0 48 512-560 118-165 (200)
432 KOG3807 Predicted membrane pro 32.8 3.9E+02 0.0085 26.3 9.3 146 145-297 189-336 (556)
433 PF09670 Cas_Cas02710: CRISPR- 32.8 5.6E+02 0.012 26.3 12.6 16 518-533 254-269 (379)
434 PF09670 Cas_Cas02710: CRISPR- 31.6 4.6E+02 0.0099 27.0 10.5 55 211-266 140-198 (379)
435 cd00280 TRFH Telomeric Repeat 31.6 3.9E+02 0.0084 24.1 12.6 18 482-499 120-137 (200)
436 COG0735 Fur Fe2+/Zn2+ uptake r 31.3 2.8E+02 0.0061 23.8 7.6 64 190-253 8-71 (145)
437 COG5191 Uncharacterized conser 31.2 96 0.0021 30.2 5.0 76 472-547 106-184 (435)
438 PF07720 TPR_3: Tetratricopept 31.0 1.3E+02 0.0029 18.5 4.4 20 542-561 4-23 (36)
439 PF11817 Foie-gras_1: Foie gra 31.0 1.5E+02 0.0033 28.2 6.6 56 475-530 180-243 (247)
440 PF10579 Rapsyn_N: Rapsyn N-te 30.8 1.2E+02 0.0025 22.8 4.3 45 517-561 18-65 (80)
441 KOG0292 Vesicle coat complex C 29.9 67 0.0014 35.9 4.2 48 483-533 653-700 (1202)
442 PRK10564 maltose regulon perip 29.7 94 0.002 30.2 4.8 38 336-373 259-296 (303)
443 KOG4642 Chaperone-dependent E3 29.3 38 0.00082 31.5 2.0 73 515-591 20-92 (284)
444 KOG2396 HAT (Half-A-TPR) repea 29.3 7.1E+02 0.015 26.4 32.1 86 191-278 91-180 (568)
445 cd08332 CARD_CASP2 Caspase act 29.2 1.7E+02 0.0037 22.7 5.3 30 185-214 48-77 (90)
446 KOG4567 GTPase-activating prot 28.8 5.7E+02 0.012 25.1 9.6 85 222-311 263-357 (370)
447 cd08332 CARD_CASP2 Caspase act 28.6 1.8E+02 0.0038 22.6 5.3 29 318-346 49-77 (90)
448 COG2256 MGS1 ATPase related to 28.6 6.7E+02 0.015 25.9 14.5 21 383-403 263-283 (436)
449 PRK11639 zinc uptake transcrip 27.5 2.7E+02 0.0059 24.6 7.1 60 229-289 18-77 (169)
450 COG5159 RPN6 26S proteasome re 27.1 5.9E+02 0.013 24.7 13.9 193 341-533 10-234 (421)
451 PF04910 Tcf25: Transcriptiona 26.7 7E+02 0.015 25.4 19.6 57 340-396 109-166 (360)
452 KOG3824 Huntingtin interacting 26.6 1.1E+02 0.0023 29.8 4.4 54 447-503 126-181 (472)
453 PRK11639 zinc uptake transcrip 26.3 3.3E+02 0.0071 24.1 7.4 50 334-383 25-74 (169)
454 PF10255 Paf67: RNA polymerase 26.0 3.4E+02 0.0075 28.0 8.3 54 308-361 127-191 (404)
455 PHA02537 M terminase endonucle 26.0 5.6E+02 0.012 24.1 10.5 24 378-401 92-115 (230)
456 KOG2422 Uncharacterized conser 25.8 8.7E+02 0.019 26.3 16.2 88 446-536 351-450 (665)
457 PF00244 14-3-3: 14-3-3 protei 25.8 5.7E+02 0.012 24.1 11.7 59 339-397 6-65 (236)
458 PF14689 SPOB_a: Sensor_kinase 25.1 1.6E+02 0.0036 20.8 4.3 26 240-265 26-51 (62)
459 PRK09462 fur ferric uptake reg 25.1 4.4E+02 0.0095 22.6 8.1 61 227-288 7-68 (148)
460 smart00777 Mad3_BUB1_I Mad3/BU 24.5 1.3E+02 0.0029 25.0 4.3 45 22-66 80-124 (125)
461 KOG0686 COP9 signalosome, subu 24.0 8.1E+02 0.017 25.3 14.8 58 305-362 152-215 (466)
462 cd08323 CARD_APAF1 Caspase act 24.0 2.8E+02 0.0062 21.3 5.6 27 187-213 44-70 (86)
463 PF08424 NRDE-2: NRDE-2, neces 23.9 7.3E+02 0.016 24.7 14.9 138 333-472 18-189 (321)
464 TIGR01503 MthylAspMut_E methyl 23.9 4.3E+02 0.0093 27.7 8.3 46 120-168 69-114 (480)
465 PF09454 Vps23_core: Vps23 cor 23.8 2.1E+02 0.0046 20.6 4.6 48 200-248 6-53 (65)
466 PRK13184 pknD serine/threonine 23.6 1.2E+03 0.027 27.3 21.2 171 186-361 671-867 (932)
467 KOG1464 COP9 signalosome, subu 23.3 6.7E+02 0.015 24.1 19.1 85 308-393 150-255 (440)
468 PF13934 ELYS: Nuclear pore co 23.0 6.3E+02 0.014 23.7 12.8 21 479-499 114-134 (226)
469 KOG1114 Tripeptidyl peptidase 22.9 1.2E+03 0.027 27.0 12.2 49 472-520 1230-1282(1304)
470 KOG2581 26S proteasome regulat 22.6 8.2E+02 0.018 25.2 9.7 141 431-571 118-279 (493)
471 KOG2422 Uncharacterized conser 22.5 1E+03 0.022 25.9 13.9 96 204-299 286-405 (665)
472 COG5191 Uncharacterized conser 22.4 1.1E+02 0.0023 29.9 3.6 67 501-567 103-170 (435)
473 PF06957 COPI_C: Coatomer (COP 22.3 8.7E+02 0.019 25.3 10.3 192 76-290 122-353 (422)
474 PF15015 NYD-SP12_N: Spermatog 22.2 1.9E+02 0.0042 29.5 5.5 21 478-498 233-253 (569)
475 PF00244 14-3-3: 14-3-3 protei 21.9 6.8E+02 0.015 23.6 10.5 41 207-247 6-46 (236)
476 TIGR02710 CRISPR-associated pr 21.6 8.9E+02 0.019 24.9 11.9 54 445-499 138-197 (380)
477 TIGR02270 conserved hypothetic 21.6 9.3E+02 0.02 25.1 25.1 187 191-393 89-276 (410)
478 KOG3364 Membrane protein invol 21.6 5.1E+02 0.011 22.0 9.9 22 443-464 77-98 (149)
479 PF12926 MOZART2: Mitotic-spin 20.9 3.9E+02 0.0086 20.5 7.6 42 258-299 29-70 (88)
480 KOG0292 Vesicle coat complex C 20.9 3.7E+02 0.008 30.6 7.6 114 436-570 671-784 (1202)
481 PF09986 DUF2225: Uncharacteri 20.9 6.8E+02 0.015 23.2 10.5 19 446-464 174-192 (214)
482 cd08323 CARD_APAF1 Caspase act 20.8 3.7E+02 0.008 20.7 5.6 27 320-346 45-71 (86)
483 PF07163 Pex26: Pex26 protein; 20.5 8E+02 0.017 23.9 10.4 53 341-393 90-142 (309)
484 COG2178 Predicted RNA-binding 20.4 5.6E+02 0.012 23.3 7.3 97 70-166 27-147 (204)
485 PF02847 MA3: MA3 domain; Int 20.3 2E+02 0.0043 23.1 4.6 22 207-228 7-28 (113)
486 KOG0991 Replication factor C, 20.3 7.4E+02 0.016 23.4 11.8 104 127-249 181-284 (333)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-79 Score=693.89 Aligned_cols=578 Identities=30% Similarity=0.534 Sum_probs=474.9
Q ss_pred CchhHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHH
Q 005642 2 DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81 (686)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 81 (686)
.|+..+|..++++|...+.+..+.++|..+.+.|..++.. ++|.|+.+|+++|+++.|.++|++|++||..+||.+|.+
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~ 161 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR-LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG 161 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHH
Confidence 4667789999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 005642 82 FMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 157 (686)
Q Consensus 82 ~~~~g~~~~A~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 157 (686)
|++.|++++|+++|++|.+ ||..||+.++++|+.. +++..+.+++..+.+.|+.||..++|+|+.+|++.|+++
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI--PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc--cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 9999999999999999964 9999999999999987 789999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC--------------------------------------
Q 005642 158 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD-------------------------------------- 199 (686)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------------------------- 199 (686)
+|.++|++|.+||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 999999999988888888888888777777777777665521
Q ss_pred -CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHH
Q 005642 200 -TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278 (686)
Q Consensus 200 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 278 (686)
+|..+||+||.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 234455555566666666666666666653 355566666666666666666666666666666666666666666
Q ss_pred HHHHHhcCChhHHHHHHHhcc----cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHH
Q 005642 279 LDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 279 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 354 (686)
+.+|++.|+++.|.++++.+. .++..+++.|+.+|++.|++++|.++|++|.++|+++|+.+|.+|++.|+.++|+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 666666666666666666555 3455566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------------------------------cch
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD------------------------------SDQ 404 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------~~~ 404 (686)
.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+. +|.
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~ 554 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDV 554 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCCh
Confidence 66666654 35666666666666666666666666666666555554 455
Q ss_pred hHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005642 405 IISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL 482 (686)
Q Consensus 405 ~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (686)
.+|++++.+|++.|+ +|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+..|+.|+..+|++++++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 556666666666665 999999999999999999999999999999999999999999999778999999999999999
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHH
Q 005642 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (686)
|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.|+.+.+++++++|+++..|..++++|...|+|++|.+++
T Consensus 635 l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCccceeeccccce
Q 005642 563 DIMREKHVGKLPGCSWADGIAFNCW 587 (686)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (686)
+.|+++|++++||++|+++-+..+.
T Consensus 715 ~~M~~~g~~k~~g~s~ie~~~~~~~ 739 (857)
T PLN03077 715 KTMRENGLTVDPGCSWVEVKGKVHA 739 (857)
T ss_pred HHHHHcCCCCCCCccEEEECCEEEE
Confidence 9999999999999999998775443
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-70 Score=622.26 Aligned_cols=581 Identities=22% Similarity=0.290 Sum_probs=528.1
Q ss_pred chhHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCC----CCChhhHHHH
Q 005642 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP----RRNCFSWNAM 78 (686)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l 78 (686)
++++++..+++++.+.|.+.+|..++..|.+.|+.|+.. ++..++..+.+.+.++.|.++++.+. .++...+|.|
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDED-AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 467788999999999999999999999999999999999 99999999999999999999998765 3678899999
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 005642 79 IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 158 (686)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 158 (686)
+..|++.|+++.|+++|++|.+||..+|+.+|.+|++. +.++.|..+++.|...|+.||..+|+.++.++++.+++..
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~--g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA--GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred HHHHHhccC----CCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005642 159 ANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234 (686)
Q Consensus 159 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 234 (686)
+.+++..+. .||..+++.++.+|++.|++++|.++|++|+++|..+||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999998887 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHH
Q 005642 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314 (686)
Q Consensus 235 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 314 (686)
||..||+.++.+|.+.|+++.+.+++..+.+.|+.||..+|+.|+.+|+++|++++|.++|++|..+|..+|+.++.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHhhCCC----CCch-----------------------------------hHHHHHHHHHhCCChhhHHH
Q 005642 315 SCGRIEDAKHIFRTMPN----KSLI-----------------------------------SWNSMIVGLSQNGSPIEALD 355 (686)
Q Consensus 315 ~~g~~~~A~~~~~~~~~----~~~~-----------------------------------~~~~li~~~~~~g~~~~A~~ 355 (686)
+.|++++|.++|++|.+ ||.. +|+.++.+|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998842 4444 45556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh-------------------
Q 005642 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK------------------- 416 (686)
Q Consensus 356 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~------------------- 416 (686)
+|++|. .+|..+|+.++.+|++.|+.++|..+|++|.+ ++.||..+|+.++.+|++
T Consensus 446 vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 666664 46889999999999999999999999999986 589999988776655544
Q ss_pred ----------------chh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 005642 417 ----------------CGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478 (686)
Q Consensus 417 ----------------~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 478 (686)
+|+ +|.++|+++ .||..+|+++|.+|+++|+.++|.++|++|. +.|+.||..||+.
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ 594 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV-ESGVNPDEVTFIS 594 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCcccHHH
Confidence 444 666666665 5789999999999999999999999999999 5799999999999
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 479 MVDLFARAGCLNEAVNLIEQM----PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
++.+|.+.|.+++|.++|++| ++.|+..+|+++++++.+.|++++|.+++++|. ..| ++.+|..|+.+|...|+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p-d~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITP-DPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCC
Confidence 999999999999999999998 378999999999999999999999999999984 677 56789999999999999
Q ss_pred cchHHHHHHHHHhcCCCCCCCccceeeccccceeehhhhhhhhcHHHHh
Q 005642 555 WEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFDEIK 603 (686)
Q Consensus 555 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (686)
.+.+....+++.+ .+|.....++...+.|...+.|+++.+.++..
T Consensus 673 ~e~~e~~a~~l~~----l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 673 VELGELAAQHIFE----LDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred hHHHHHHHHHHHh----hCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999888876 34555666777778888888898888887633
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-66 Score=576.02 Aligned_cols=481 Identities=26% Similarity=0.464 Sum_probs=459.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHH
Q 005642 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGS 144 (686)
Q Consensus 70 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 144 (686)
++..+|+.+|.++.+.|++++|+++|+.|.. ||..+|+.++.+|++. ++.+.+.+++..|.+.|+.||..+|+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 4667899999999999999999999999963 6788999999999987 67889999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 224 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 224 (686)
.++.+|++.|++++|.++|++|.+|| ..+||++|.+|++.|++++|+++
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~-------------------------------~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERN-------------------------------LASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCC-------------------------------eeeHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999998888777 88899999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCch
Q 005642 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 304 (686)
Q Consensus 225 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 304 (686)
|++|.+.|+.|+..||..++.+|.+.|..+.+.+++..+.+.|+.||..+++.|+++|+++|++++|.++|++|.++|..
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~v 291 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCC----CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005642 305 LLNTMITVYSSCGRIEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380 (686)
Q Consensus 305 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 380 (686)
+||.++.+|++.|+.++|.++|++|. .||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 99999999999999999999999995 47999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 005642 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458 (686)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 458 (686)
+.|++++|.++|++|. .||..+|++||.+|++.|+ +|+++|++|.+.|+.||..||++++.+|++.|++++|.+
T Consensus 372 k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 372 KWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999999999999985 4789999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
+|+.|.+..|+.|+..+|++++++|++.|++++|.+++++++..|+..+|++++.+|+.+|+++.|..++++++++.|++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 99999877899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccceeeccccce
Q 005642 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCW 587 (686)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (686)
...|..++++|++.|+|++|.++++.|+++|+++.|+++|+++....+.
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~ 576 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS 576 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE
Confidence 9999999999999999999999999999999999999999998765443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-62 Score=545.12 Aligned_cols=513 Identities=13% Similarity=0.176 Sum_probs=338.1
Q ss_pred hHHHHHHHHHhhccCccchhhHHHHHHHHhCC-CCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHH
Q 005642 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83 (686)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 83 (686)
...+..++..|.+.|++.+|.++++.|.+.|+ .++.. .++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|+
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v-~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI-YHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH-HHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45566666666666777777777777776664 33444 56666666666777777777777776677777777777777
Q ss_pred hcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 005642 84 KLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 159 (686)
Q Consensus 84 ~~g~~~~A~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 159 (686)
+.|++++|.++|+.|.+ ||..+|+.+|.+|++. ++++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~--G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS--GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 77777777777776654 6666777777777766 56667777777777777777777777777777777777777
Q ss_pred HHHHhccC----CCChhhHHHHHHHHHccCCHHHHHHHHhhcC------CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 005642 160 NQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTT------DTSSVMWNSMISGYISNNEDTEALLLFHKMR 229 (686)
Q Consensus 160 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (686)
.++|++|. .||..+|+.+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77776665 3666777777777777777777777776663 3566677777777777777777777777777
Q ss_pred HCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc----cCCchh
Q 005642 230 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYDTIL 305 (686)
Q Consensus 230 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~ 305 (686)
+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.|++++|.++|++|. .||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777777665 456667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCC----CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005642 306 LNTMITVYSSCGRIEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381 (686)
Q Consensus 306 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 381 (686)
|+.+|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 7777777777777777777777663 366667777777777777777777777777766777777777777777777
Q ss_pred cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005642 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD 461 (686)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (686)
.|+++.|.++|.+|.+.|+.||..+|++++.++.+.-++|..+.+.+.. |+. .......+..++|..+|+
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~---------f~~-g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVS---------FDS-GRPQIENKWTSWALMVYR 836 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh---------hhc-cccccccchHHHHHHHHH
Confidence 7777777777777777777777777777665433211112111111110 000 000011122356777777
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 462 AMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 462 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
+|. +.|+.||..+|+.++.++++.+..+.+..+++.+. ..|+..+|+++++++.+. .++|..++++|.+
T Consensus 837 eM~-~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 837 ETI-SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHH-HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 777 45777777777777777767777777777777764 445566777777776332 3567777777777
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-62 Score=538.82 Aligned_cols=521 Identities=16% Similarity=0.216 Sum_probs=380.4
Q ss_pred CCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHH
Q 005642 37 LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN-----CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111 (686)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~ 111 (686)
.++.. .|..++..|++.|++++|.++|++|++++ ...++.++.+|.+.|.+++|+.+|+.|..||..+|+.+|.
T Consensus 367 ~~~~~-~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSP-EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCch-HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34444 88999999999999999999999998654 4566778888999999999999999999999999999999
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccC----CCChhhHHHHHHHHHccCCH
Q 005642 112 GFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK----EPDDFCLSALISGYANCGKM 187 (686)
Q Consensus 112 ~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 187 (686)
+|++. ++++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++
T Consensus 446 a~~k~--g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 446 VCASS--QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99998 7899999999999999999999999999999999999999999999998 48888888888888888888
Q ss_pred HHHHHHHhhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCcCHHHHHHHHHHHHccCChhhHHHHHH
Q 005642 188 NDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRR--NGVLEDASTLASVLSACSSLGFLEHGKQVHG 261 (686)
Q Consensus 188 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 261 (686)
++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888887774 36778888888888888888888888888865 5678888888888888888888888888888
Q ss_pred HHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc----cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC----CC
Q 005642 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KS 333 (686)
Q Consensus 262 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~ 333 (686)
.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+ ||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888776 34555555555555555555555555555542 34
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 413 (686)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005642 414 YCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE 491 (686)
Q Consensus 414 ~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (686)
|++.|+ +|.++|.+|.+.|+.||..+|+.++..|. ++++++.++.+.+. ... + .......+..++
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~-~f~--~--------g~~~~~n~w~~~ 830 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVV-SFD--S--------GRPQIENKWTSW 830 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhh-hhh--c--------cccccccchHHH
Confidence 555554 55555555555555555555555554332 13334433333222 000 0 000111233567
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc-cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 492 AVNLIEQM---PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE-LDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 492 A~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
|..+|++| ++.||..+|+.++.++...+..+.+..+++.+.. -.+.+..+|..++..+.+. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999 4899999999999888888889988888877654 2334667899999987322 3689999999999
Q ss_pred cCCCCCCC
Q 005642 568 KHVGKLPG 575 (686)
Q Consensus 568 ~~~~~~~~ 575 (686)
.|+.++..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99876554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-59 Score=519.04 Aligned_cols=455 Identities=24% Similarity=0.392 Sum_probs=427.4
Q ss_pred HHHHHHHHHhhccCccchhhHHHHHHHHhC-CCCCchhhHHHHHHHHHhcCCcHHHHHHhccCC----CCChhhHHHHHH
Q 005642 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP----RRNCFSWNAMIE 80 (686)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~ 80 (686)
..+..++.++...|++.+|.+++..|...+ +.|+.. +|+.++.++.+.++++.|.+++..|. .||..+||.|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~-t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 478899999999999999999999999875 678888 99999999999999999999999987 479999999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005642 81 GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 160 (686)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 160 (686)
+|++.|++++|.++|++|.+||..+|++++.+|++. ++++.|..+++.|.+.|+.||..+|+.++.++++.|+.+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~--g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA--GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHC--cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999999999999999999999998 789999999999999999999999999999999999999999
Q ss_pred HHHhccC----CCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 005642 161 QVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236 (686)
Q Consensus 161 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 236 (686)
+++..+. .+|..+|+.++.+|++.|++++|.++|++|.++|+.+||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9988776 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhC
Q 005642 237 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 316 (686)
Q Consensus 237 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 316 (686)
..||+.++.+|++.|+++.|.++++.|.+.|+.||..+++.|+++|+++|++++|.++|+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~-------------------- 384 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD-------------------- 384 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999998888887
Q ss_pred CCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 317 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 317 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
+|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 385 -----------~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 385 -----------RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred -----------hCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 667789999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H-hCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-C
Q 005642 397 I-IGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-E 472 (686)
Q Consensus 397 ~-~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~ 472 (686)
+ .|+.|+..+|++++++|++.|+ +|.+++++| ++.|+..+|++|+.+|..+|+++.|..+++++. ++.| +
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~ 527 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEK 527 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCC
Confidence 6 6889999999999999999987 888888766 678899999999999999999999999988876 5667 4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP 500 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (686)
..+|..|+++|++.|++++|.++++.|+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7788999999999999999999998883
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7e-32 Score=313.45 Aligned_cols=547 Identities=12% Similarity=0.058 Sum_probs=456.7
Q ss_pred HHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC---CChhhHHHHHHHHHhcC
Q 005642 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLG 86 (686)
Q Consensus 10 ~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 86 (686)
.+-..+...|+.++|..++..+++.... +.. .+..+...+.+.|++++|...++++.+ .+...++.+...+.+.|
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPN-SHQ-ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCC
Confidence 3345566778999999999999886533 333 788889999999999999999998864 35678999999999999
Q ss_pred CHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005642 87 HKEKSLQLFNVMPQ--KN-DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 163 (686)
Q Consensus 87 ~~~~A~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 163 (686)
++++|...|+++.+ |+ ...+..+...+... ++.+.|...+..+.+.... +......++..|.+.|++++|.+++
T Consensus 378 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQ--GDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999998866 43 33444444555554 7889999999988877543 3455667888899999999999999
Q ss_pred hccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 005642 164 NMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 237 (686)
Q Consensus 164 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 237 (686)
+.+.+ ++..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++.+.+ +.+.
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 98874 4567888899999999999999999998654 356678888999999999999999999998763 4567
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHH
Q 005642 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYS 314 (686)
Q Consensus 238 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 314 (686)
.++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++++. +.+...|..+..++.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 788888899999999999999999998875 4566778889999999999999999999887 346778999999999
Q ss_pred hCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 005642 315 SCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391 (686)
Q Consensus 315 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 391 (686)
..|++++|...|+++.+ .++..+..+...+.+.|++++|...|+++.+. .+.+..++..+...+...|++++|.++
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998754 35567888999999999999999999999875 344577888899999999999999999
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 005642 392 FARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469 (686)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 469 (686)
++.+.+.. +.+...+..+...+.+.|+ +|...|+++...+ |+..++..++..+.+.|++++|.+.++.+.+ ..
T Consensus 692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~ 766 (899)
T TIGR02917 692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--TH 766 (899)
T ss_pred HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 99998875 5566778888888888888 8999999988764 4446777888899999999999999999884 23
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
+.+...+..++..|...|++++|.+.|+++. .+++...+..+...+...|+ ++|+..++++++..|+++..+..++.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 3478889999999999999999999999883 34467788999999999999 88999999999999999999999999
Q ss_pred HHhhcCCcchHHHHHHHHHhcCC
Q 005642 548 IFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
++...|++++|.++++++.+.++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999988654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-31 Score=312.04 Aligned_cols=541 Identities=12% Similarity=0.066 Sum_probs=446.1
Q ss_pred hhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHHHH
Q 005642 15 CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKS 91 (686)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 91 (686)
+...+++++|...+..+++.+..... .+..+...+...|++++|...|+++.+ .+...+..+...+.+.|++++|
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSAPEYLP--ALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence 34567899999999998886633222 556667788889999999999988764 3556788888899999999999
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC
Q 005642 92 LQLFNVMPQ--K-NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 168 (686)
Q Consensus 92 ~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (686)
+..++.+.+ | +...+..+...+.+. ++.+.|...++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLAL--GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999998865 2 345566666667666 78899999999888764 33667788888999999999999999988874
Q ss_pred --C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHH
Q 005642 169 --P-DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242 (686)
Q Consensus 169 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 242 (686)
| .......++..+.+.|++++|..+++++.. .++.+|+.+...+...|++++|.+.|+++.+.. +.+...+..
T Consensus 426 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 504 (899)
T TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAAN 504 (899)
T ss_pred hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHH
Confidence 2 234566677889999999999999988764 356789999999999999999999999998752 445667777
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCH
Q 005642 243 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRI 319 (686)
Q Consensus 243 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 319 (686)
+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++. +.+...+..++..+.+.|++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence 8888899999999999999998875 4567788889999999999999999999875 33566788889999999999
Q ss_pred HHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 320 EDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 320 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
++|...++++.+ .++..|..++..+...|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+++.+.
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998864 356789999999999999999999999998753 4456678888888999999999999999988
Q ss_pred HhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh
Q 005642 397 IIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474 (686)
Q Consensus 397 ~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 474 (686)
+.. +.+...+..+...+...|+ +|..+++.+.+.+ +++...+..+...+...|++++|.+.|+.+.. ..|+..
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 737 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQ 737 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCch
Confidence 764 4557788889999998888 8999999998775 34667788888889999999999999999883 456667
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
++..++.++.+.|++++|.+.++++. .+.+...+..+...+...|+.++|...++++++..|+++.++..+++++...
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 88889999999999999999998872 3346778888889999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcC
Q 005642 553 GEWEKSSLIRDIMREKH 569 (686)
Q Consensus 553 g~~~~a~~~~~~~~~~~ 569 (686)
|+ ++|..+++++.+..
T Consensus 818 ~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA 833 (899)
T ss_pred Cc-HHHHHHHHHHHhhC
Confidence 99 88999999887653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=8.8e-25 Score=254.25 Aligned_cols=552 Identities=13% Similarity=0.078 Sum_probs=406.0
Q ss_pred hHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC--CCh-hhH------
Q 005642 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNC-FSW------ 75 (686)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~------ 75 (686)
.+.+..-.+-+...++.+.|++.+.+++... |+...++..++..+.+.|+.++|.+.+++..+ |+. ..+
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 3445666677788889999999999998854 33333888899999999999999999998875 322 222
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHH-HHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhH
Q 005642 76 ----------NAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNM-LISGFAKADLAALEYGKQIHSHILVNGLDFDSVL 142 (686)
Q Consensus 76 ----------~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~-ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 142 (686)
..+...+.+.|++++|+..|++..+ |+...... ........ .++.+.|...++.+.+.. +.+...
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~-~g~~~~A~~~L~~ll~~~-P~~~~~ 183 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKL-PAQRPEAINQLQRLNADY-PGNTGL 183 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhC-CccHHHHHHHHHHHHHhC-CCCHHH
Confidence 2334467889999999999999876 33332221 22222222 367889999999998875 336778
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCC-CCh----------------------hhHH------------------------
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKE-PDD----------------------FCLS------------------------ 175 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------------------~~~~------------------------ 175 (686)
+..+...+...|+.++|++.++++.+ +.. ..+.
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 88899999999999999999887642 100 0000
Q ss_pred ----------HHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHH-
Q 005642 176 ----------ALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTL- 240 (686)
Q Consensus 176 ----------~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~- 240 (686)
.....+...|++++|+..|++..+ .+...+..+...+.+.|++++|+..|++..+..-.. +...+
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 112345678999999999987654 357788889999999999999999999988743211 11111
Q ss_pred -----------HHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhccc---CCchhH
Q 005642 241 -----------ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV---YDTILL 306 (686)
Q Consensus 241 -----------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 306 (686)
......+.+.|++++|...++++++.. +.+...+..+..++...|++++|++.|+++.. .+...+
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 122345678899999999999999874 34566777889999999999999999998873 345566
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCCCC------------chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHH
Q 005642 307 NTMITVYSSCGRIEDAKHIFRTMPNKS------------LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLA 373 (686)
Q Consensus 307 ~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~ 373 (686)
..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+.
T Consensus 423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~ 499 (1157)
T PRK11447 423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTY 499 (1157)
T ss_pred HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 66777664 457899998888775421 123455677788899999999999999875 44 455667
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHH---------HHHH
Q 005642 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTII---------TFTA 442 (686)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~---------~~~~ 442 (686)
.+...+.+.|++++|...++.+.+... .+...+..+...+...++ +|+..++++......++.. .+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 888889999999999999999887542 334444444444555554 7888877764332222221 2234
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGD 520 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~ 520 (686)
+...+...|+.++|.++++. .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|+
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 56677888999999988772 2346677788999999999999999999988 3455 57778889999999999
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCC
Q 005642 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (686)
.++|+..++++.+..|+++..+..++.++...|++++|.++++++.+...+
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 999999999999999998888999999999999999999999988875543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.7e-23 Score=243.61 Aligned_cols=545 Identities=12% Similarity=0.071 Sum_probs=400.3
Q ss_pred HHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC--C-ChhhHHHHHHHHHhc
Q 005642 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKL 85 (686)
Q Consensus 9 ~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 85 (686)
....+.+...|+.++|...+..+++...+.... ....+.......|+.++|+..|+++.+ | +...+..+...+...
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~l-a~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAPPELDL-AVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCCChHH-HHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 444556788899999999999998764333221 221222223345999999999999985 3 566888999999999
Q ss_pred CCHHHHHHHHhhCCC-CCcc-----hHH-------------HHHHHHHhc--ChhhHHHHHHHHHHHHHcCCCCChhHHH
Q 005642 86 GHKEKSLQLFNVMPQ-KNDF-----SWN-------------MLISGFAKA--DLAALEYGKQIHSHILVNGLDFDSVLGS 144 (686)
Q Consensus 86 g~~~~A~~~~~~m~~-~~~~-----~~~-------------~ll~~~~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 144 (686)
|+.++|+..|+++.+ +... .|. ..+..+... .......+...+.........|+.. ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~ 273 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-AR 273 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HH
Confidence 999999999999865 2110 110 011111111 0112334445555444433333322 23
Q ss_pred HHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CC---hhhHH----------
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TS---SVMWN---------- 206 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~---~~~~~---------- 206 (686)
.....+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+ |+ ...|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 446677889999999999999874 4 567888899999999999999999998764 22 11222
Q ss_pred --HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 005642 207 --SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284 (686)
Q Consensus 207 --~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 284 (686)
.....+.+.|++++|+..|+++++.. +.+...+..+...+...|++++|.+.|+++++.. +.+...+..+...|.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence 22446778999999999999999863 4456677788899999999999999999999875 345666777777775
Q ss_pred cCChhHHHHHHHhcccCC------------chhHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCC
Q 005642 285 RGMPSDACKLFSELKVYD------------TILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGS 349 (686)
Q Consensus 285 ~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 349 (686)
.++.++|...++.+.... ...+..+...+...|++++|.+.|++..+. ++..+..+...|.+.|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 467899999988765321 224556778889999999999999998763 44677888999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchh---------HHHHHHHHHHhchh-
Q 005642 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI---------ISTSLVDFYCKCGY- 419 (686)
Q Consensus 350 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~~~- 419 (686)
+++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. ....+...+...|+
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998742 2234444444455678899999999998764432222221 12334556666666
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 005642 420 -DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIE 497 (686)
Q Consensus 420 -~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (686)
+|..+++. .+++...+..+...+.+.|++++|++.|++..+ ..| +...+..++.+|...|++++|.+.++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 78887762 244666778888899999999999999999983 356 68899999999999999999999999
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc------hhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 498 QMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA------CAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 498 ~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+. ..| +...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|...+++...
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 874 455 456677788889999999999999999999776544 3566779999999999999999988864
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=5.3e-21 Score=212.44 Aligned_cols=532 Identities=10% Similarity=0.031 Sum_probs=379.4
Q ss_pred ccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHHHHHH
Q 005642 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQ 93 (686)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 93 (686)
..|++++|...+.+.++..... .. ++..|...|.+.|++++|+..+++..+. |...+..+ ..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n-~~-~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDN-IP-LTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHH
Confidence 3488999999999999977555 44 9999999999999999999999998853 33344443 322 89999999
Q ss_pred HHhhCCC--CCcc-hHHHHHHH------HHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCChHHHHHHH
Q 005642 94 LFNVMPQ--KNDF-SWNMLISG------FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSL-VNLYGKCGDFNSANQVL 163 (686)
Q Consensus 94 ~~~~m~~--~~~~-~~~~ll~~------~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~ 163 (686)
+|+++.. |+.. ++..+... ... ...+.+...++ .....+.|+..+.... ...|.+.|++++|++.+
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y---~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRL---AQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhh---hhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999976 5433 33333232 111 23466666666 4444455556655555 89999999999999999
Q ss_pred hccCC--CC-hhhHHHHHHHHHc-cCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cCHH
Q 005642 164 NMMKE--PD-DFCLSALISGYAN-CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL-EDAS 238 (686)
Q Consensus 164 ~~~~~--~~-~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~ 238 (686)
+++.+ |. ..-...+...|.+ .++ +++..+++...+.++..+..++..|.+.|+.++|.++++++...... |...
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 99986 33 2335556667777 477 88988887766678899999999999999999999999987543211 3333
Q ss_pred HHHHH------------------------------HHHHHccCChhhHHHH-----------------------------
Q 005642 239 TLASV------------------------------LSACSSLGFLEHGKQV----------------------------- 259 (686)
Q Consensus 239 ~~~~l------------------------------l~~~~~~~~~~~a~~~----------------------------- 259 (686)
++..+ +..+.+.++++.+.++
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 32222 2223334444433333
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhccc--CC----chhHHHHHHHHHhCCC---HHHHHHH-----
Q 005642 260 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YD----TILLNTMITVYSSCGR---IEDAKHI----- 325 (686)
Q Consensus 260 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~---~~~A~~~----- 325 (686)
+..+.+.. +-+....--+.......|+.++|.++|....+ ++ ....+-++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 365 ARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 11122210 11333333334445667888999999988764 22 2234467777777766 2333222
Q ss_pred --------------------HhhCCC---C--CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005642 326 --------------------FRTMPN---K--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380 (686)
Q Consensus 326 --------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 380 (686)
+..... + +...|..+..++.. +++++|+..|.+.... .|+......+...+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY 520 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH
Confidence 111111 2 45677788877776 8898999988888764 466655444555567
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 005642 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQK 458 (686)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 458 (686)
..|++++|...++.+... +|+...+..+...+.+.|+ +|...+++..+.+. ++...+..+.......|++++|..
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHH
Confidence 899999999999987554 3444456666777788887 89999999887652 233334444445556799999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 459 WFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
.+++.. ...|+...+..+..++.+.|++++|...+++. ...|+ ...+..+...+...|+.++|+..++++++..|
T Consensus 598 ~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999988 45678889999999999999999999999988 46664 66788888899999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
+++..+..++.++...|++++|...+++..+..
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999887643
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.7e-22 Score=197.09 Aligned_cols=438 Identities=13% Similarity=0.125 Sum_probs=262.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHH-HHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005642 75 WNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISG-FAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151 (686)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ll~~-~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~ 151 (686)
...|..-..+.|++++|++--...-+ |....-..++.+ +.+. .+++...+--...++. .+--..+|+.+.+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~--~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG--SRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc--cchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 44566666778888888875544433 222111122222 2222 1222221111111121 1223456777777777
Q ss_pred hcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCChhHHHHHH
Q 005642 152 KCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTDTSSV---MWNSMISGYISNNEDTEALLLF 225 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~ 225 (686)
..|++++|+.+++.+.+ | .+..|..+..++...|+.+.|...|.+..+-|+. ..+.+...+-..|+.++|...|
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 77777777777777764 2 2345555555555555555555555554443221 1222333333455555555555
Q ss_pred HHHHHCCCCcC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc--cC-
Q 005642 226 HKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VY- 301 (686)
Q Consensus 226 ~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~- 301 (686)
.+.++. .|. ...|+.|...+...|+...|.+.|++.++..+ --...|-.|...|...+.+++|...|.+.. .|
T Consensus 208 lkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 208 LKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 555542 232 22444455555555555555555555555321 123344455555555555555555555443 22
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005642 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378 (686)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 378 (686)
..+.+..+...|..+|.+|.|...+++..+.+ +..|+.|..++-..|+..+|.+.|.+.... .+....+.+.+...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHH
Confidence 23445555555555555555555555554422 245555555555555555555555555443 11223344455555
Q ss_pred HHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHH
Q 005642 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT-IITFTAILSACDHCGLVKEGQ 457 (686)
Q Consensus 379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~ 457 (686)
+...|.+++|..+|. ...+ +.|. ...++.|...|-+.|++++|+
T Consensus 364 ~~E~~~~e~A~~ly~---------------------------------~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 364 YREQGKIEEATRLYL---------------------------------KALE--VFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHHhccchHHHHHHH---------------------------------HHHh--hChhhhhhhhhHHHHHHhcccHHHHH
Confidence 555555555555554 4332 2333 356889999999999999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 005642 458 KWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIEL 534 (686)
Q Consensus 458 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 534 (686)
..+++.. .++|+ .+.|+.++..|-..|+.+.|.+.+.+. .+.|. ...++.|...+...|++.+|++.|++++.+
T Consensus 409 ~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 409 MCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999988 68896 789999999999999999999999988 47775 677899999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCCcch
Q 005642 535 DPENACAYIQLSSIFATSGEWEK 557 (686)
Q Consensus 535 ~p~~~~~~~~l~~~~~~~g~~~~ 557 (686)
+|+.+.+|..++..+.--.+|.+
T Consensus 486 kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred CCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999988776666666
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=7.1e-22 Score=194.19 Aligned_cols=414 Identities=14% Similarity=0.111 Sum_probs=300.8
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCCCh---hhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCh
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMKEPDD---FCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNED 218 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 218 (686)
.|..-..+.|++.+|++.....-..|. ...-.+-.++.+..+.+.....-....+ ....+|..+...+-..|++
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 344445566777777776655543211 1122222445555555554433322222 2355777777777777777
Q ss_pred hHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHH-HHHHHHHHHHhcCChhHHHHHHH
Q 005642 219 TEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFS 296 (686)
Q Consensus 219 ~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 296 (686)
++|+.+|+.+++. +| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+...+...|++++|...|.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 7777777777763 44 4557777777777777777777777777774 34433 33445556666777777777776
Q ss_pred hcc--cC-CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-H
Q 005642 297 ELK--VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-K 369 (686)
Q Consensus 297 ~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 369 (686)
+.. +| -.+.|+.|...+-.+|++-.|+..|++..+-|+ ..|-.+...|...+.+++|+..|.+... .+|+ .
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A 286 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHA 286 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcch
Confidence 655 22 245677777777777877777777777766444 5677777777777778877777777665 3444 3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 370 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
..+..+...|...|.++.|+..|++.++.. +.=...|+.|..++...|+ +|.+.+.+....... ...+.+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 556666666777778888888877777653 2224567777777777777 777777777654322 456788999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A 524 (686)
...|.+++|..+|.... .+.|. ....+.|...|..+|++++|+.-|++. +++|+ ...|+.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999999987 46674 678899999999999999999999987 68887 67799999999999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 525 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+.+.+++..+|..+.++..|+.+|.+.|+..+|+.-++...+..
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999877643
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=4.8e-19 Score=196.96 Aligned_cols=546 Identities=10% Similarity=-0.017 Sum_probs=394.4
Q ss_pred hhHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC--C-ChhhHHHHHH
Q 005642 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIE 80 (686)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 80 (686)
++..+..+.+.+...|++++|+...+..++.. |+.. .+..++..+ +++++|...++++.+ | +...+..+..
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~-~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~ 150 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDA-RLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCR 150 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccH-HHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence 35667788899999999999999999999865 4443 333333222 899999999999974 3 5566666666
Q ss_pred H--------HHhcCCHHHHHHHHhhCCCCC--cchHHHH-HHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 005642 81 G--------FMKLGHKEKSLQLFNVMPQKN--DFSWNML-ISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 149 (686)
Q Consensus 81 ~--------~~~~g~~~~A~~~~~~m~~~~--~~~~~~l-l~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~ 149 (686)
. |.+.+...++++ .+...|+ ..+.... .+.+.+. ++.+.+..++..+.+.++. +..-...|..+
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l--~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~a 225 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYL--KQWSQADTLYNEARQQNTL-SAAERRQWFDV 225 (987)
T ss_pred HhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHH--hCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 5 666666666666 3333343 3333333 6666666 7889999999999998744 45556677778
Q ss_pred HHh-cCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC-----CChhh-------------------
Q 005642 150 YGK-CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD-----TSSVM------------------- 204 (686)
Q Consensus 150 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~------------------- 204 (686)
|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++.. ++..+
T Consensus 226 y~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred HHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 887 477 8888887765566788888999999999999999999987653 11111
Q ss_pred -----------HHHHHHHHHhcCChhHHHHHHH-----------------------------HHHHCCCCcCHHHHHHHH
Q 005642 205 -----------WNSMISGYISNNEDTEALLLFH-----------------------------KMRRNGVLEDASTLASVL 244 (686)
Q Consensus 205 -----------~~~li~~~~~~g~~~~A~~~~~-----------------------------~m~~~g~~p~~~~~~~ll 244 (686)
.-.++..+.++++++.+.++.. .|.+. .+-+......+-
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~ 383 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLT 383 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHH
Confidence 1122455566666665554421 11111 011333333333
Q ss_pred HHHHccCChhhHHHHHHHHHHc-C-CCchHHHHHHHHHHHHhcCCh---hHHHHH-------------------------
Q 005642 245 SACSSLGFLEHGKQVHGHACKV-G-VIDDVIVASALLDTYSKRGMP---SDACKL------------------------- 294 (686)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~l~~~~~~~g~~---~~A~~~------------------------- 294 (686)
-...+.|+.++|.++++..... + -..+......++..|.+.+.. ..+..+
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 3455678899999999988773 1 222445556788888888762 333222
Q ss_pred HHhcc---cC--CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHH--HHHhCCChhhHHHHHHHHHHCCCCC
Q 005642 295 FSELK---VY--DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV--GLSQNGSPIEALDLFCNMNKLDLRM 367 (686)
Q Consensus 295 ~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p 367 (686)
+.... ++ +...|..+..++.. ++.++|...+.+.....+..++.+.. .+...|++++|...|+++... +|
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 11112 22 55678888888877 88989999887766543444555444 446899999999999998654 45
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILS 445 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~ 445 (686)
+...+..+..++.+.|++++|...+...++.. +.+...+..+.....+.|+ +|...+++..+. .|+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 55566677788899999999999999998865 2333333334334444465 999999999865 456788999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKG 522 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~ 522 (686)
.+.+.|++++|...+++.. ...| +...+..+..++...|++++|+..|++. ...| +...+..+..++...|+++
T Consensus 618 ~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999988 3566 6788999999999999999999999987 4566 5778999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCC
Q 005642 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571 (686)
Q Consensus 523 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (686)
+|+..+++++++.|++..+....+++.....+++.+.+-++......+.
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999999999988866654443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=8.9e-18 Score=183.87 Aligned_cols=412 Identities=14% Similarity=0.056 Sum_probs=281.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNE 217 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 217 (686)
+......|.+.|+++.|+..|++..+ |+...|..+..+|.+.|++++|++.+++..+ .+..+|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 44567778888999999999988774 7777888888899999999999999987665 345688888899999999
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHh
Q 005642 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 297 (686)
Q Consensus 218 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 297 (686)
+++|+..|......+- .+......++..... ..+........+.. +++...+..+.. |......+....-+.+
T Consensus 210 ~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 9999988877655421 111111112211111 11222222222321 112112222222 2221112222111221
Q ss_pred cccCCc---hhHHHHHHHH---HhCCCHHHHHHHHhhCCCC------CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 005642 298 LKVYDT---ILLNTMITVY---SSCGRIEDAKHIFRTMPNK------SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365 (686)
Q Consensus 298 ~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 365 (686)
..+.+. ..+..+...+ ...+++++|.+.|++..+. ....|..+...+...|++++|+..|++..+.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 111111 1111111111 2346788888888776542 2346777777888888888888888888764
Q ss_pred CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHH
Q 005642 366 RMD-KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTA 442 (686)
Q Consensus 366 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ 442 (686)
.|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|+ +|...|++..+... .+...+..
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~ 438 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQ 438 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHH
Confidence 444 4567777777888888888888888887764 3456677778888888777 88888888876543 25667888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHH
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADV-G-------MWSSIL 512 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~li 512 (686)
+...+.+.|++++|+..|++..+ ..| +...+..++.++...|++++|++.|++. ...|+. . .++..+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 88899999999999999999883 345 6889999999999999999999999986 344431 1 122222
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..+...|++++|+..++++++++|++..++..++.++.+.|++++|.+++++..+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 23445699999999999999999999889999999999999999999999988764
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.1e-16 Score=166.58 Aligned_cols=504 Identities=13% Similarity=0.111 Sum_probs=366.4
Q ss_pred HHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005642 88 KEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL--DFDSVLGSSLVNLYGKCGDFNSANQVLN 164 (686)
Q Consensus 88 ~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 164 (686)
++.|...|....+ ........+-++|...+++++..+..++...+...+ +||+.+ .+..++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 4677777776655 222334456678887788899999999999776654 445443 34567789999999999999
Q ss_pred ccCCCChhhHHHHHHH------HHccCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-
Q 005642 165 MMKEPDDFCLSALISG------YANCGKMNDARRVFDRTT---DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL- 234 (686)
Q Consensus 165 ~~~~~~~~~~~~li~~------~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 234 (686)
+..+.|+..-++++.. +-....+..+..++.+.- ..|+..-+.|...|...|+++.++.+...+......
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 9997665444444432 123445666676666543 357889999999999999999999999998775311
Q ss_pred -cCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHH
Q 005642 235 -EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMI 310 (686)
Q Consensus 235 -p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 310 (686)
.-...|-.+.+++-..|++++|..+|.+..+....-....+..|..+|.+.|+++.+...|+.+. +.+..+...|.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 23446788999999999999999999998886533224455778999999999999999999887 44567788888
Q ss_pred HHHHhCC----CHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHH----HHCCCCCCHHHHHHHHHHH
Q 005642 311 TVYSSCG----RIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNM----NKLDLRMDKFSLASVISAC 379 (686)
Q Consensus 311 ~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~ 379 (686)
..|...+ ..+.|..++.+..++ |...|-.+...+-... +..++..|..+ ...+..+.....|.+....
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 8888775 567888888877764 4456666666665544 44447666554 4566678889999999999
Q ss_pred HccCChHHHHHHHHHHHHh---CCCcchh------HHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 005642 380 ANISSLELGEQVFARVTII---GLDSDQI------ISTSLVDFYCKCGY--DALALFNEMRNTGVKPTI-ITFTAILSAC 447 (686)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~-~~~~~ll~~~ 447 (686)
...|+++.|...|...... ...++.. +--.+...+-..++ .|.+.+....+. .|.. ..|..++...
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHH
Confidence 9999999999999987655 1223321 12223333333323 788888888865 3443 3455555444
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHH-------
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM----PFEADVGMWSSILRGCV------- 516 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~li~~~~------- 516 (686)
...++..+|...++.... ....++..+..++..+.+...+..|.+-|+.. ...+|..+.-+|.+.|.
T Consensus 541 ~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 456788899999999873 44457777888888888888888888855554 34577777777777654
Q ss_pred -----hcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccceeeccccceeehh
Q 005642 517 -----AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDT 591 (686)
Q Consensus 517 -----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (686)
..+..++|++.|.+++..+|.|..+-+.++-+++..|++.+|..+|.++++...+..+ +| +..++|++..+
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v~--lNlah~~~e~~ 694 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED--VW--LNLAHCYVEQG 694 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--ee--eeHHHHHHHHH
Confidence 2345788999999999999999888888999999999999999999999986543333 23 34457888888
Q ss_pred hhhhhhcHHHH
Q 005642 592 MFLQLANFDEI 602 (686)
Q Consensus 592 ~~~~~~~~~~~ 602 (686)
.|..+++.++-
T Consensus 695 qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 695 QYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHH
Confidence 88888888873
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=3e-18 Score=178.15 Aligned_cols=301 Identities=12% Similarity=0.102 Sum_probs=212.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHhc
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKR 285 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~ 285 (686)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556677777888888777652 23445666677777777777777777777766432221 23455556666666
Q ss_pred CChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 005642 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 365 (686)
Q Consensus 286 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 365 (686)
|++++|..+|+++... ...+..++..++..+.+.|++++|.+.++.+.+.+.
T Consensus 121 g~~~~A~~~~~~~l~~----------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 121 GLLDRAEELFLQLVDE----------------------------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred CCHHHHHHHHHHHHcC----------------------------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 6666666666543210 113445677777777777888888888877776543
Q ss_pred CCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHH
Q 005642 366 RMDK----FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFT 441 (686)
Q Consensus 366 ~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 441 (686)
.++. ..+..+...+.+.|++++|...++++.+.. +.+...+.
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~ 218 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD----------------------------------PQCVRASI 218 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC----------------------------------cCCHHHHH
Confidence 3221 133455556667777777777777665432 11345677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 005642 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPE--IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAH 518 (686)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~ 518 (686)
.+...+.+.|++++|.++++++.+ ..|+ ..++..++.+|.+.|++++|...++++ ...|+...+..++..+.+.
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~ 295 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQ 295 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 788889999999999999999883 2343 467888999999999999999999987 3667777778899999999
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHHhh---cCCcchHHHHHHHHHhcCCCCCCCc
Q 005642 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFAT---SGEWEKSSLIRDIMREKHVGKLPGC 576 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (686)
|++++|...++++++..|++.. +..+...+.. .|+.+++..++++|.+++++.+|.+
T Consensus 296 g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 296 EGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 9999999999999999997754 5555555443 5699999999999999999888874
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.2e-17 Score=182.13 Aligned_cols=339 Identities=11% Similarity=-0.006 Sum_probs=200.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
+..+.+.|++++|..+++..+... +-+...+..++.+....|+++.|...++.+.+.. +.+...+..+...+...|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 344444455555555554444431 1122233333333444455555555555544432 22333444444455555555
Q ss_pred hHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 289 SDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KS-LISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 289 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
++|...+++.. +.+...+..++..+...|++++|...++.+.. |+ ...+..+ ..+...|++++|...++.+.+
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 55555554443 12233444445555555555555555444321 22 2222222 235556666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh------HHHHHHHHHHHCCCCCC
Q 005642 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY------DALALFNEMRNTGVKPT 436 (686)
Q Consensus 363 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~A~~~~~~m~~~~~~p~ 436 (686)
....++......+..++...|++++|...++.+.+.. +.+...+..+...|...|+ +|...|++..+... .+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~ 283 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DN 283 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CC
Confidence 4322333333444455566666666666666666543 3344555556666666665 26777777765532 26
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHH-HHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGM-WSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~li~ 513 (686)
...+..+...+...|++++|...+++..+ ..| +...+..+..++.+.|++++|...|+++. ..|+... +..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 67889999999999999999999999883 456 56778889999999999999999999883 5666444 444567
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
++...|+.++|...++++++..|++. ...|++|...+....+
T Consensus 361 al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHH
Confidence 78899999999999999999999764 2344556655555554
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.3e-16 Score=163.02 Aligned_cols=534 Identities=14% Similarity=0.092 Sum_probs=382.0
Q ss_pred cchhhHHHHHHHHhCCCCCchhhHHHHHHHH--HhcCCcHHHHHHhccCCC--CC--hhhHHHHHHHHHhcCCHHHHHHH
Q 005642 21 IHVGKQLHLHFLKKGILNSTLPIANRLLQMY--MRCGNPTDALLLFDEMPR--RN--CFSWNAMIEGFMKLGHKEKSLQL 94 (686)
Q Consensus 21 ~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~ 94 (686)
.+.|.+.|...++.. |+. +...|..+. ...|++..|..+|+.... |. +...-.+...+.+.|+.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~s--p~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHH
Confidence 345555666665544 222 334454443 345799999999998542 21 11222334556788999999999
Q ss_pred HhhCCCCCcchHHHHHHH--H--HhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCC
Q 005642 95 FNVMPQKNDFSWNMLISG--F--AKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 170 (686)
Q Consensus 95 ~~~m~~~~~~~~~~ll~~--~--~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (686)
|.+..+.|.....+++.. + .......+..+.+.+....... ..++.+.+.|.+.|.-.|+++.+..+...+...+
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 999988544333333221 1 1113355677777777766654 4578889999999999999999999988877422
Q ss_pred ------hhhHHHHHHHHHccCCHHHHHHHHhhcCCC---C-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH
Q 005642 171 ------DFCLSALISGYANCGKMNDARRVFDRTTDT---S-SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 240 (686)
Q Consensus 171 ------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 240 (686)
..+|-.+..+|...|++++|...|-+..+. + +..+.-+...|...|+.+.+...|+...+. .+-+..|.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHH
Confidence 345778899999999999999999876653 2 456777889999999999999999999886 34456677
Q ss_pred HHHHHHHHccC----ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc--------cCCchhHHH
Q 005642 241 ASVLSACSSLG----FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--------VYDTILLNT 308 (686)
Q Consensus 241 ~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~ 308 (686)
..+...|...+ ..+.|..++....+.- +.|...|-.+..+|....-+. +..+|..+. +..+...|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777777665 5677888888877763 567788888887776654433 355554433 456778999
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCC-------Cc------hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHH-HH
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNK-------SL------ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL-AS 374 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ 374 (686)
+.......|++++|...|...... +. .+-..+...+-..++++.|.+.|..+.+. .|+-.+. .-
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHH
Confidence 999999999999999999887542 22 12334566666778999999999999875 4554433 33
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc--
Q 005642 375 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTG-VKPTIITFTAILSACDH-- 449 (686)
Q Consensus 375 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~-- 449 (686)
++...-..+...+|...+..+.+.. ..++..++-+...|.+..+ .|.+-|....+.- ..+|..+..+|...|.+
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 3322224467888888888877654 4455556656656666555 5555555444322 23677777777776543
Q ss_pred ----------cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 005642 450 ----------CGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCV 516 (686)
Q Consensus 450 ----------~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~ 516 (686)
.+..++|+++|.+.. ...| |...-+.++-+++..|++.+|..+|.+.. ......+|-++..+|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 345678899988887 3445 88888999999999999999999999984 2335677889999999
Q ss_pred hcCChhHHHHHHHHHHcc-C-CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 517 AHGDKGLGRKVAERMIEL-D-PENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..|++-.|+++|+..+.. . .+++.+...|+.++.+.|.|.+|.+++......
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999998883 2 347788889999999999999999998876653
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=2.2e-16 Score=175.98 Aligned_cols=395 Identities=9% Similarity=0.029 Sum_probs=232.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 005642 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGY 212 (686)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 212 (686)
+.....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++... .+...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444445555666677777777777777653 2233466666777777777777777776432 3455666667777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHH
Q 005642 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292 (686)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 292 (686)
...|++++|+..+++..+. .+.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..+.|.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 7777777777777777664 233444 6566666667777777777777777754 224445555666666677777777
Q ss_pred HHHHhcccCCch--------hHHHHHHHHHh-----CCCH---HHHHHHHhhCCC---CCchh---HH----HHHHHHHh
Q 005642 293 KLFSELKVYDTI--------LLNTMITVYSS-----CGRI---EDAKHIFRTMPN---KSLIS---WN----SMIVGLSQ 346 (686)
Q Consensus 293 ~~~~~~~~~~~~--------~~~~li~~~~~-----~g~~---~~A~~~~~~~~~---~~~~~---~~----~li~~~~~ 346 (686)
..++.... ++. ....++..... .+++ ++|++.++.+.+ .++.. +. ..+..+..
T Consensus 171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 171 GAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 77665553 111 11111111111 1112 344444444331 11110 00 00222334
Q ss_pred CCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHH
Q 005642 347 NGSPIEALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~ 425 (686)
.|++++|+..|+++.+.+.+ |+. ....+...+...|++++|+..|+.+.+.....
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~----------------------- 305 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETI----------------------- 305 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC-----------------------
Confidence 45555555555555544321 211 11113344555555555555555443321000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHHhcCChHHH
Q 005642 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH----------IDPE---IEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 426 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A 492 (686)
..........+..++...|++++|.++++.+..... -.|+ ...+..+...+...|++++|
T Consensus 306 -------~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 306 -------ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred -------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 000123455556667788888888888888763210 1122 23455677778888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 493 VNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 493 ~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++.++++ ...| +...+..+...+...|++++|++.++++++.+|++...+..++.++...|+|++|..+++.+.+.
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888887 2344 46677788888888888888888888888888888888888888888888888888888887764
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=5.7e-18 Score=176.11 Aligned_cols=232 Identities=10% Similarity=0.015 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCCCC--------hhhHHHHHH
Q 005642 142 LGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTS--------SVMWNSMIS 210 (686)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~ 210 (686)
++..+...|.+.|+++.|+.+|+++.+ .+..++..++..+.+.|++++|.+.++++.+.+ ...|..+..
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 445556666666666666666666653 233445555555555555555555555443211 112334444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhH
Q 005642 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290 (686)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 290 (686)
.+.+.|++++|+..|+++.+.. +.+..++..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555555431 222334444555555555555555555555544322223344455555555555555
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH
Q 005642 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 370 (686)
Q Consensus 291 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 370 (686)
|...++++.. ..|+...+..++..+.+.|++++|..+++++.+. .|+..
T Consensus 268 A~~~l~~~~~-----------------------------~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 268 GLEFLRRALE-----------------------------EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred HHHHHHHHHH-----------------------------hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 5555554331 0133334455555666666666666666655543 45555
Q ss_pred HHHHHHHHHHc---cCChHHHHHHHHHHHHhCCCcchh
Q 005642 371 SLASVISACAN---ISSLELGEQVFARVTIIGLDSDQI 405 (686)
Q Consensus 371 t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 405 (686)
++..++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55555555443 335566666666665555444433
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.6e-16 Score=173.34 Aligned_cols=367 Identities=11% Similarity=-0.009 Sum_probs=253.1
Q ss_pred hcCChHHHHHHHhccCC------CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHH
Q 005642 152 KCGDFNSANQVLNMMKE------PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEAL 222 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 222 (686)
+..+++.-.-+|...++ .+..-...++..+.+.|++++|..+++.... .+...+..++.+....|++++|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 44556555555555543 1122344455667777888888887776543 34555666667777788888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc--c
Q 005642 223 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--V 300 (686)
Q Consensus 223 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 300 (686)
..|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..++..+...|++++|...++.+. .
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 8888887742 3345566667777778888888888888887753 3456667777778888888888888777654 2
Q ss_pred C-CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC----chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 005642 301 Y-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375 (686)
Q Consensus 301 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 375 (686)
| +...+..+ ..+...|++++|...++.+.+.+ ...+..+...+.+.|++++|+..|+++.+.. +.+...+..+
T Consensus 175 P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~L 252 (656)
T PRK15174 175 PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSL 252 (656)
T ss_pred CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3 33333333 34677788888888887765432 2334445567778888888888888887652 3345566677
Q ss_pred HHHHHccCChHH----HHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005642 376 ISACANISSLEL----GEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDH 449 (686)
Q Consensus 376 l~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 449 (686)
...+...|++++ |...++.+.+.. +.+...+..+...+.+.|+ +|...+++..+.... +...+..+...+.+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~ 330 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 777788888775 778888777764 3456677778888888777 788888887765433 55677788889999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 005642 450 CGLVKEGQKWFDAMKWQYHIDPEI-EHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKV 527 (686)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~ 527 (686)
.|++++|...++.+.. ..|+. ..+..+..++...|++++|...|++. ...|+.. ..++++|...
T Consensus 331 ~G~~~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~ 396 (656)
T PRK15174 331 VGQYTAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLA 396 (656)
T ss_pred CCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHH
Confidence 9999999999999883 34643 44555678899999999999999987 4556542 3455678888
Q ss_pred HHHHHccCCCC
Q 005642 528 AERMIELDPEN 538 (686)
Q Consensus 528 ~~~~~~~~p~~ 538 (686)
+.++++.-+..
T Consensus 397 ~~~~~~~~~~~ 407 (656)
T PRK15174 397 LDGQISAVNLP 407 (656)
T ss_pred HHHHHHhcCCc
Confidence 88888755443
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=8.1e-16 Score=171.54 Aligned_cols=402 Identities=8% Similarity=-0.008 Sum_probs=294.5
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHc
Q 005642 107 NMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYAN 183 (686)
Q Consensus 107 ~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 183 (686)
.-.+...... ++.+.|..++....... +.+...+..+...+.+.|++++|.+++++..+ | +...+..+...+..
T Consensus 19 ~d~~~ia~~~--g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWA--GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3344444444 67889999998887632 44566789999999999999999999999753 4 45567788888999
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHH
Q 005642 184 CGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260 (686)
Q Consensus 184 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 260 (686)
.|++++|...+++..+ .+.. |..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..+.|...+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 9999999999998764 3455 8889999999999999999999999852 334555666777788889999999988
Q ss_pred HHHHHcCCCchH------HHHHHHHHHHHh-----cCCh---hHHHHHHHhcc---cCCchh---H----HHHHHHHHhC
Q 005642 261 GHACKVGVIDDV------IVASALLDTYSK-----RGMP---SDACKLFSELK---VYDTIL---L----NTMITVYSSC 316 (686)
Q Consensus 261 ~~~~~~g~~~~~------~~~~~l~~~~~~-----~g~~---~~A~~~~~~~~---~~~~~~---~----~~li~~~~~~ 316 (686)
+.+.+ .|+. .....++..+.. .+++ ++|...++.+. +.++.. + ...+.++...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 77664 2221 112223333322 2234 67787777776 222221 1 1113455678
Q ss_pred CCHHHHHHHHhhCCCCC---ch-hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHH
Q 005642 317 GRIEDAKHIFRTMPNKS---LI-SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM---DKFSLASVISACANISSLELGE 389 (686)
Q Consensus 317 g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~ 389 (686)
|++++|...|+++.+.+ +. .-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999998743 21 22335778999999999999999987643211 1244566677789999999999
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 005642 390 QVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTI---ITFTAILSACDHCGLVKEGQKWFDAMKWQ 466 (686)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 466 (686)
+.++.+.+... +....+. ...-.|+. ..+..+...+...|+.++|+++++++..
T Consensus 331 ~~l~~~~~~~P-~~~~~~~---------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~- 387 (765)
T PRK10049 331 TVTAHTINNSP-PFLRLYG---------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY- 387 (765)
T ss_pred HHHHHHhhcCC-ceEeecC---------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 99998876532 1111110 00113342 3455677788899999999999999983
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 467 YHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 467 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
..| +...+..++..+...|++++|++.+++. ...|+ ...+..++..+...|++++|+..++++++..|+++.+
T Consensus 388 --~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 388 --NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred --hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 345 6889999999999999999999999998 46675 5667777788899999999999999999999998763
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=3.3e-15 Score=163.13 Aligned_cols=417 Identities=10% Similarity=0.058 Sum_probs=186.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHH---HHHHHccCCHHHHHHHHh
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL---ISGYANCGKMNDARRVFD 195 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~ 195 (686)
|++..|...+.++.+..+.....++ .++..+...|+.++|+..+++...|+...+..+ ...+...|++++|+++|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555555554322222233 555555555666666666555554433322222 234445555666665555
Q ss_pred hcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH
Q 005642 196 RTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272 (686)
Q Consensus 196 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 272 (686)
++.+ .++..+..++..+.+.++.++|++.++++.+. .|+...+..+...+...++..+|.+.++++.+.. +.+.
T Consensus 127 kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~ 203 (822)
T PRK14574 127 SSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSE 203 (822)
T ss_pred HHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCH
Confidence 5543 12344445555555555555555555555442 3443333333233333344434555555555543 3344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcccC-Cchh--------HHHHHHHH---H--hCCC---HHHHHHHHhhCCC---C
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELKVY-DTIL--------LNTMITVY---S--SCGR---IEDAKHIFRTMPN---K 332 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~li~~~---~--~~g~---~~~A~~~~~~~~~---~ 332 (686)
..+..+..++.+.|-...|.++..+-+.- +... ...+++.- . ...+ .+.|+.-++.+.. +
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~ 283 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGK 283 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccC
Confidence 45555555555555555555555443210 0000 00011000 0 0011 1222222222221 1
Q ss_pred Cc---hh----HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchh
Q 005642 333 SL---IS----WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405 (686)
Q Consensus 333 ~~---~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 405 (686)
++ .. .--.+.++...|++.++++.|+.+...|.+....+-..+.++|...+++++|..++..+.....++.
T Consensus 284 ~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~-- 361 (822)
T PRK14574 284 DPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF-- 361 (822)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--
Confidence 11 00 1112334444455555555555555544443334444555555555555555555554433221000
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC----------CCCC---
Q 005642 406 ISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH----------IDPE--- 472 (686)
Q Consensus 406 ~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----------~~p~--- 472 (686)
...++......|.-++...+++++|..+++.+.+... -.|+
T Consensus 362 --------------------------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 362 --------------------------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred --------------------------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 0111222234455555555555555555555542100 0111
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
...+..++..+.-.|++.+|++.++++. ..| |......+.+.+...|.+.+|++.++.+..++|++..+....+.++.
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 1223334444555555555555555552 223 44455555555555555555555555555555555555555555555
Q ss_pred hcCCcchHHHHHHHHHh
Q 005642 551 TSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 551 ~~g~~~~a~~~~~~~~~ 567 (686)
..|+|.+|..+.+.+.+
T Consensus 496 ~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 496 ALQEWHQMELLTDDVIS 512 (822)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 55555555555554444
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=6.6e-16 Score=169.21 Aligned_cols=251 Identities=14% Similarity=0.047 Sum_probs=143.5
Q ss_pred CChhHHHHHHHHHHHCC-CCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHH
Q 005642 216 NEDTEALLLFHKMRRNG-VLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 293 (686)
Q Consensus 216 g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 293 (686)
+++++|++.|++..+.+ ..| ....+..+...+...|++++|...++..++.. +.+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666666666666543 223 23345555555556666666666666666643 2234455566666666666666666
Q ss_pred HHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 005642 294 LFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367 (686)
Q Consensus 294 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 367 (686)
.|++.. +.+...|..+...+...|++++|...|++..+. +...+..+...+.+.|++++|+..|++..+. .+.
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~ 465 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPE 465 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC
Confidence 666554 223455666666666666666666666665442 2344555666666666666666666666553 222
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTII-TFTAILSA 446 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~ 446 (686)
+...+..+...+...|++++|...|+..++.....+. ..++.. .++..+..
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~----------------------------~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP----------------------------MYMNVLPLINKALAL 517 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc----------------------------ccccHHHHHHHHHHH
Confidence 3455556666666666666666666665543211100 000111 11222223
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+...|++++|.+++++..+ +.| +...+..++.++.+.|++++|+..|++.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~---l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALI---IDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3345788888888887762 345 3456777777777777777777777765
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=8e-15 Score=160.20 Aligned_cols=442 Identities=10% Similarity=0.023 Sum_probs=311.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CCcc-hHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005642 77 AMIEGFMKLGHKEKSLQLFNVMPQ--KNDF-SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153 (686)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~--~~~~-~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~ 153 (686)
.-+-...+.|+++.|++.|++..+ |+.. ....++..+... ++.+.|..+++..+ ..-..+......+...|...
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc--CCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHc
Confidence 333445799999999999999987 5432 223677777766 78899999998887 11122233333446688888
Q ss_pred CChHHHHHHHhccCC--CC-hhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHh--cCChhHHHHHHHHH
Q 005642 154 GDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS--NNEDTEALLLFHKM 228 (686)
Q Consensus 154 g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m 228 (686)
|++++|+++|+++.+ |+ ...+..++..+...++.++|++.++++.+.++.....+..++.. .++..+|++.++++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999999985 33 45566777889999999999999999887554433334445544 56666699999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHH--HHHHHHHHh---------cCCh---hHHHHH
Q 005642 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA--SALLDTYSK---------RGMP---SDACKL 294 (686)
Q Consensus 229 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~l~~~~~~---------~g~~---~~A~~~ 294 (686)
.+.+ +-+...+..+..++.+.|-...|.++..+-... +.+....+ ...+.-..+ ..++ +.|..-
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 9863 446777788889999999999998776653221 22222111 111111111 1222 334444
Q ss_pred HHhccc-----CCc-hh----HHHHHHHHHhCCCHHHHHHHHhhCCCCC----chhHHHHHHHHHhCCChhhHHHHHHHH
Q 005642 295 FSELKV-----YDT-IL----LNTMITVYSSCGRIEDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPIEALDLFCNM 360 (686)
Q Consensus 295 ~~~~~~-----~~~-~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (686)
++.+.. |.. .. ..-.+.++...|+..++.+.|+.+..+. ..+-..+..+|...+++++|..+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 444442 221 12 2245668889999999999999998643 245667889999999999999999999
Q ss_pred HHCC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC
Q 005642 361 NKLD-----LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP 435 (686)
Q Consensus 361 ~~~g-----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p 435 (686)
.... ..++......|.-++...+++++|..+++.+.+.. ++-...+. -......|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~-p~~~~~~~-------------------~~~~~pn~ 413 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT-PYQVGVYG-------------------LPGKEPND 413 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcEEeccC-------------------CCCCCCCc
Confidence 7643 12233345778889999999999999999998732 11111010 00011334
Q ss_pred CHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHH
Q 005642 436 TII-TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD-VGMWSSI 511 (686)
Q Consensus 436 ~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l 511 (686)
|-. .+..++..+...|+..+|++.++++.. ..| |......+.+.+...|.+.+|.+.++... ..|+ ..+....
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 443 344556678899999999999999983 445 89999999999999999999999998874 5664 5667778
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
+..+...|++++|..+.+.+.+..|+++. ...+..
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~-~~~l~r 525 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIP-SQELDR 525 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchh-HHHHHH
Confidence 88888999999999999999999999875 334443
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.4e-13 Score=129.13 Aligned_cols=344 Identities=13% Similarity=0.187 Sum_probs=252.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 005642 169 PDDFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244 (686)
Q Consensus 169 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 244 (686)
.+..++..||.++|+-...+.|.+++++... -+..++|.+|.+-.- -...+++.+|.+..+.||..||+.++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 4558999999999999999999999997654 467788888875432 22378999999999999999999999
Q ss_pred HHHHccCChhhH----HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhH-HHHHHHhcc------------cCCchhHH
Q 005642 245 SACSSLGFLEHG----KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD-ACKLFSELK------------VYDTILLN 307 (686)
Q Consensus 245 ~~~~~~~~~~~a----~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------------~~~~~~~~ 307 (686)
.+.++.|+++.+ .+++.+|.+.|+.|...+|..++..+++.++..+ +..++.++. +.|...+.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 999999988764 5788999999999999999999999999888754 455555443 12445677
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCCC-----------CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 005642 308 TMITVYSSCGRIEDAKHIFRTMPNK-----------SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376 (686)
Q Consensus 308 ~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 376 (686)
.-+..|.+..+.+-|.++-.-.... ...-|..+....++....+.-..+|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 7778888889988888876655431 12356677888889999999999999999888899999999999
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCH
Q 005642 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTII---TFTAILSACDHCGLV 453 (686)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~ 453 (686)
++..-.+.++-..+++.+++..|..-+.... .+++..|......|+.. -+.....-|+. ++
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~--------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~ 504 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLR--------------EEILMLLARDKLHPLTPEREQLQVAFAKCAA--DI 504 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHH--------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HH
Confidence 9999999999999999999988855443332 23334444444444433 23332222211 11
Q ss_pred HHH-HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHH
Q 005642 454 KEG-QKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-------PFEADVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 454 ~~A-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~ 525 (686)
.++ ...-.++. ..+-.....+++.-.+.|.|+.++|++++.-. +..|......-+++...+.++...|.
T Consensus 505 ~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 505 KEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 111 11122222 33446667788888999999999999998766 12333333446667777888899999
Q ss_pred HHHHHHHccC
Q 005642 526 KVAERMIELD 535 (686)
Q Consensus 526 ~~~~~~~~~~ 535 (686)
.+++-+.+.+
T Consensus 582 ~~lQ~a~~~n 591 (625)
T KOG4422|consen 582 EVLQLASAFN 591 (625)
T ss_pred HHHHHHHHcC
Confidence 9988887644
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=3.8e-11 Score=120.30 Aligned_cols=529 Identities=13% Similarity=0.100 Sum_probs=358.3
Q ss_pred CccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCC---CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 005642 19 HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP---RRNCFSWNAMIEGFMKLGHKEKSLQLF 95 (686)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 95 (686)
+++..|+.+.....+....+++ .|-+-...=-..|++..|+.+..+=- .++...|-.- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretnP~hp~--gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPP--GWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCc--hHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHH----HhcCChHHHHHHH
Confidence 4566677777777776644333 44444444455677777776664332 2344444333 2344555566665
Q ss_pred hhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC--CChhh
Q 005642 96 NVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFC 173 (686)
Q Consensus 96 ~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 173 (686)
-...+....+-..-+.+.--. .+...-..++...++. ++.++..|-..+ ...+.++|+-++.+..+ |.
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE--~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAveccp~--- 408 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLE--SDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECCPQ--- 408 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhh--hHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhccc---
Confidence 555441111212222222111 2333334455554443 444566665444 44667778888887765 32
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCcCHHHHHHHHHH
Q 005642 174 LSALISGYANCGKMNDARRVFDRTT---DTSSVMWNSMISGYISNNEDTEALLLFHKM----RRNGVLEDASTLASVLSA 246 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~ 246 (686)
-.-|.-+|.+..-++.|..++++.. ..+...|.+-...--.+|+.+...+++.+- ...|+..+...|..=...
T Consensus 409 s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 409 SMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 1234455667777888888887654 457778887777777888888888877654 456888888888888888
Q ss_pred HHccCChhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHH
Q 005642 247 CSSLGFLEHGKQVHGHACKVGVIDD--VIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIED 321 (686)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 321 (686)
|-..|..-.+..+....+..|+... ..+|..-.+.|.+.+.++-|..+|.... +.+...|...+..--..|..+.
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 8888888888888888888776543 3478888888889999999999888776 3456677777777777888888
Q ss_pred HHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 322 AKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 322 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
-..+|++... +....|-.....+-..|+...|..++....+.. +.+...+-..+..-.....++.|..+|.+....
T Consensus 569 l~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 8888888765 345667767777778899999999998888763 335667777777778888999999999888765
Q ss_pred CCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHH
Q 005642 399 GLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTI-ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHY 476 (686)
Q Consensus 399 ~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~ 476 (686)
+....+.+-++-+.-|....++|++++++..+. -|+. -.|..+.+.+-+.++++.|.+.|..-. ..-| .+..|
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~---k~cP~~ipLW 722 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGT---KKCPNSIPLW 722 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccCCCCchHH
Confidence 433333333444455555555888888887764 3444 467777788888899999988888755 2345 57788
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc---------------
Q 005642 477 SCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA--------------- 539 (686)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~--------------- 539 (686)
..|...=.+.|.+-.|..++++.. ..| +...|-..|..-.+.|+.+.|..+..++++--|.+.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 888888888899999999998874 234 677788889988899999998888877777444433
Q ss_pred ---------------hhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 540 ---------------CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 540 ---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+...++..++...+++.|+++|....+.+
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345556666666666777777666555543
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=3.4e-14 Score=135.55 Aligned_cols=451 Identities=12% Similarity=0.100 Sum_probs=306.9
Q ss_pred chHHHHHHHHHhcCh-hhHHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCChHHHHHHHhccCC--CC------hhh
Q 005642 104 FSWNMLISGFAKADL-AALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKE--PD------DFC 173 (686)
Q Consensus 104 ~~~~~ll~~~~~~~~-~~~~~a~~i~~~~~~~g~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~ 173 (686)
.||+.|.....+-.. .-..+|...++-+++...-|+.... -.+.+.|.+...+..|++.++.... |+ ...
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 467666654443321 3356777888888888777766543 3456778888899999998876653 22 234
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------------cCHHH
Q 005642 174 LSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL------------EDAST 239 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------p~~~~ 239 (686)
.+.+.-.+.+.|++++|+..|+...+ ||..+-..|+-++..-|+-++..+.|++|+.-... |+...
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 45555668899999999999998664 66555445555666778999999999999763222 33333
Q ss_pred HHHHHH-----HHHccC--ChhhHHHHHHHHHHcCCCchH---------------------HHHHHHHHHHHhcCChhHH
Q 005642 240 LASVLS-----ACSSLG--FLEHGKQVHGHACKVGVIDDV---------------------IVASALLDTYSKRGMPSDA 291 (686)
Q Consensus 240 ~~~ll~-----~~~~~~--~~~~a~~~~~~~~~~g~~~~~---------------------~~~~~l~~~~~~~g~~~~A 291 (686)
.+..++ -..+.+ +.+++.-.-.+++.--+.|+- ..--.-..-|.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 332222 122211 122222111111111111210 0011124578899999999
Q ss_pred HHHHHhcccCCchhHH----HHHHH--HHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 292 CKLFSELKVYDTILLN----TMITV--YSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~----~li~~--~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
.++++-....|..+-+ .|-.. +..-.++..|.+.-+..... ++.....-......+|++++|.+.|++...
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 9999988866654432 22222 22245677888777766543 223333333445568999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHH
Q 005642 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITF 440 (686)
Q Consensus 363 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~ 440 (686)
..-......|++ .-.+...|++++|++.|-++... +..+..+...+...|....+ +|++++-+.... ++.|+...
T Consensus 519 ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 644444444443 33567889999999998876432 23456666677777776666 777777655432 45578889
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHH-Hh
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMWSSILRGC-VA 517 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~li~~~-~~ 517 (686)
..|...|-+.|+...|.+++-+-- ..-| +.++...|...|....-+++|+.+|++.. +.|+..-|..++..| ++
T Consensus 596 skl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 999999999999999999887643 4445 89999999999999999999999999985 889999999988765 67
Q ss_pred cCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHH
Q 005642 518 HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 518 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
.|++++|..+|+......|.+...+..|..++...|-. ++.++
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key 715 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEY 715 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHH
Confidence 89999999999999999999999999999999888843 34443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=3.6e-12 Score=132.61 Aligned_cols=515 Identities=13% Similarity=0.080 Sum_probs=349.8
Q ss_pred HHhcCCcHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CcchHHHHHHHHHhcChhhHHHH
Q 005642 51 YMRCGNPTDALLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVMP--QK-NDFSWNMLISGFAKADLAALEYG 124 (686)
Q Consensus 51 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-~~~~~~~ll~~~~~~~~~~~~~a 124 (686)
+...|++++|..++.++++. +..+|..|...|-..|+.++++..+-..- .| |..-|..+-.-..+. +.+.+|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~--~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL--GNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc--ccHHHH
Confidence 33459999999999999863 66789999999999999999988765442 23 445566555555555 679999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCCh----hhH----HHHHHHHHccCCHHHHHHHHhh
Q 005642 125 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD----FCL----SALISGYANCGKMNDARRVFDR 196 (686)
Q Consensus 125 ~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~----~~li~~~~~~g~~~~A~~~~~~ 196 (686)
.-++...++..+ ++....-.-+..|-+.|+...|..-|.++.+.+. .-. ...+..+...++.+.|.+.++.
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998863 3555555567788899999999998888875222 222 2345557777888999998887
Q ss_pred cCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH--------------------------HHHHH
Q 005642 197 TTD-----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL--------------------------ASVLS 245 (686)
Q Consensus 197 ~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------------------------~~ll~ 245 (686)
... -+-..++.++..+.+...++.+......+......+|..-+ ..+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 654 23557889999999999999999998888762222222211 12333
Q ss_pred HHHccCChhhHHHHHHHHHHcCC--CchHHHHHHHHHHHHhcCChhHHHHHHHhcccC----CchhHHHHHHHHHhCCCH
Q 005642 246 ACSSLGFLEHGKQVHGHACKVGV--IDDVIVASALLDTYSKRGMPSDACKLFSELKVY----DTILLNTMITVYSSCGRI 319 (686)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~ 319 (686)
++.+....+....+...+.+.+. ..+...|.-+.++|...|++.+|+.+|..+... +...|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44566666777777777777764 345668889999999999999999999998732 566899999999999999
Q ss_pred HHHHHHHhhCCCCCc---hhHHHHHHHHHhCCChhhHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHccCChHHH
Q 005642 320 EDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPIEALDLFCNMNK--------LDLRMDKFSLASVISACANISSLELG 388 (686)
Q Consensus 320 ~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a 388 (686)
++|.+.|+.....++ ..--.+...+.+.|++++|.+.+..+.. .+..|+..........+...|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999877444 3444566778899999999999988642 23445555555666667778887775
Q ss_pred HHHHHHHHHhCCC-----c-----------------chhHHHHHHHHHHhchh--------HHHHHHHHHHHCCCCCCH-
Q 005642 389 EQVFARVTIIGLD-----S-----------------DQIISTSLVDFYCKCGY--------DALALFNEMRNTGVKPTI- 437 (686)
Q Consensus 389 ~~~~~~~~~~~~~-----~-----------------~~~~~~~li~~~~~~~~--------~A~~~~~~m~~~~~~p~~- 437 (686)
..+-..|+..... | .......++.+-.+.++ .+-..+.--...|...+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 5555554432110 1 00111111222222111 000111111112222222
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh----HHHHHHHHHHhcCChHHHHHHHHhCC------CCCC-H
Q 005642 438 -ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE----HYSCMVDLFARAGCLNEAVNLIEQMP------FEAD-V 505 (686)
Q Consensus 438 -~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~-~ 505 (686)
..+.-++..+++.+++++|+.+...+....-+.-+.. .-...+.+....+++..|...++.+- ..|. .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3556677788899999999999988874332222332 33556667778899999999988872 1332 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-chhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPEN-ACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..|+...+...+.++-.--.+.+..+....|++ +......+......+.|..|..++-.+...
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~ 769 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ 769 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh
Confidence 457766666777776666666777777677776 444555566777888899999877766654
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=2e-10 Score=115.28 Aligned_cols=468 Identities=12% Similarity=0.035 Sum_probs=358.6
Q ss_pred hcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005642 84 KLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161 (686)
Q Consensus 84 ~~g~~~~A~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 161 (686)
...+.+.|.-++.+..+ |.. .-|.-++++. ..++.|..++...++. ++-+..+|.+-...--.+|+.+...+
T Consensus 388 elE~~~darilL~rAveccp~s---~dLwlAlarL--etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQS---MDLWLALARL--ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred hccChHHHHHHHHHHHHhccch---HHHHHHHHHH--HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 34456667777777766 321 2233445555 6788888898888775 67788888877777778898888888
Q ss_pred HHhccC--------CCChhhHHHHHHHHHccCCHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 005642 162 VLNMMK--------EPDDFCLSALISGYANCGKMNDARRVFDRTTD------TSSVMWNSMISGYISNNEDTEALLLFHK 227 (686)
Q Consensus 162 ~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 227 (686)
++++-. +-+...|-.=...|-+.|.+-.+..+...... .-..+|+.-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 887654 13445555555666667777766666665432 1245888889999999999999999988
Q ss_pred HHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCch
Q 005642 228 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTI 304 (686)
Q Consensus 228 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 304 (686)
.++- ++-+...|......--..|..+....++++++.. .+-....|.....-+-..|++..|..++..+- +.+..
T Consensus 542 alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 542 ALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 8874 3445566666666666778899999999999887 34466677777788888899999999988776 33556
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 005642 305 LLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISACAN 381 (686)
Q Consensus 305 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 381 (686)
.|-.-+.....+.+++.|..+|.+... +....|.--+...--.+..++|++++++..+. -|+ ...|..+...+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 788888899999999999999988765 44556665555556678899999999888875 455 4566677777788
Q ss_pred cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005642 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459 (686)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (686)
.++.+.|...|..=.+. ++..+..|-.|...--+.|. .|..++++..-.+++ +...|...|..-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHH
Confidence 88888888877653332 34456677777777777766 899999998877655 778899999999999999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
..+..+ ..+.+...|..-|.+..+.++-..+.+.+++... |+...-.+...+....+++.|..-|.+++..+|++.
T Consensus 776 makALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 776 MAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 998884 3445778888888888888888888888888764 455566677888889999999999999999999999
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+|..+..-+.+.|.-++-.++++.-..
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 9999999999999999999999886554
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=2.8e-10 Score=118.80 Aligned_cols=531 Identities=13% Similarity=0.097 Sum_probs=354.4
Q ss_pred ccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhcc---CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 005642 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE---MPRRNCFSWNAMIEGFMKLGHKEKSLQ 93 (686)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~ 93 (686)
..|+.++|..+...+++....... .|..|...|-..|+.+++...+=- ....|..-|-.+.....+.|++++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~--ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPI--AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 349999999999999998755544 899999999999999999976633 234577899999999999999999999
Q ss_pred HHhhCCCCCcchHHHH---HHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHH----HHHHHHhcCChHHHHHHHhcc
Q 005642 94 LFNVMPQKNDFSWNML---ISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSS----LVNLYGKCGDFNSANQVLNMM 166 (686)
Q Consensus 94 ~~~~m~~~~~~~~~~l---l~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~ 166 (686)
.|.+.++.+..-|..+ ...|-+. |+...|..-+.++....++.|..-... .+..|...++-+.|.+.++..
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~--G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKT--GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh--ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999987332223322 2334444 778888888888888765444444433 345566677779999988887
Q ss_pred CC-----CChhhHHHHHHHHHccCCHHHHHHHHhhcCC--------------------------CChhhHH----HHHHH
Q 005642 167 KE-----PDDFCLSALISGYANCGKMNDARRVFDRTTD--------------------------TSSVMWN----SMISG 211 (686)
Q Consensus 167 ~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~----~li~~ 211 (686)
.. -+...++.++..+.+...++.|......... ++..+|. -+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 64 3445688888999998888888877654322 1111121 22233
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 005642 212 YISNNEDTEALLLFHKMRRNGVLE--DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
+...+..+....+.......++.| +...|.-+..++...|++..|..++..+......-+..+|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 334444444444455555555434 556788899999999999999999999999876667889999999999999999
Q ss_pred HHHHHHHhcccC---CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCch------------hHHHHHHHHHhCCChhhHH
Q 005642 290 DACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI------------SWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 290 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~ 354 (686)
+|...|+.+... +...-..|...+.+.|+.++|.+.+..+..||.. .-......+.+.|+.++=+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999998733 4556667888999999999999999998776631 1223445667788877755
Q ss_pred HHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHHccCChHHHHHHHH------HHHHhCCCcch--
Q 005642 355 DLFCNMNKLD-----LRM-----------------DKFSLASVISACANISSLELGEQVFA------RVTIIGLDSDQ-- 404 (686)
Q Consensus 355 ~~~~~m~~~g-----~~p-----------------~~~t~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~~~~-- 404 (686)
..-..|.... +-| ...+...++.+-.+.++.....+-.. .....|+..+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 5544443321 111 11222233333333333222111111 11112222221
Q ss_pred hHHHHHHHHHHhchh--HHHHHHHHHHHCCCC-CCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--C-Chh
Q 005642 405 IISTSLVDFYCKCGY--DALALFNEMRNTGVK-PTII----TFTAILSACDHCGLVKEGQKWFDAMKWQYHID--P-EIE 474 (686)
Q Consensus 405 ~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~-p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--p-~~~ 474 (686)
..+.-++..+++.+. +|+.+...+...... -+.. .-...+.++...+++..|...++.+....+.. | ...
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 244556777777777 888888887765421 1222 22344556778999999999999998654433 3 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhh
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQM-PFEADV--GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 551 (686)
.|+...+.+.+.|+-.--.+++..+ ...|+. +.......-....+.+..|++.+.++....|++|.+-..++.++..
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 6666666777766655555555544 223322 2222223335567889999999999999999988877666666543
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=6.9e-11 Score=112.72 Aligned_cols=419 Identities=14% Similarity=0.117 Sum_probs=221.9
Q ss_pred cCccchhhHHHHHHHHhCCCCCchhhHHHHHHH--HHhcCCcHH-HHHHhccCCC---CChhhHHHHHHHHHhcCCHHHH
Q 005642 18 HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTD-ALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKS 91 (686)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~--~~~~g~~~~-A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 91 (686)
.|....+--++++|.+.|.+-++- +-..|... |-...++.- -.+.|-.|.. .+..+| +.|...+
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD- 197 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH-
Confidence 455666667778888777666655 44444432 222222222 2234444442 223333 2233322
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccC----
Q 005642 92 LQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK---- 167 (686)
Q Consensus 92 ~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 167 (686)
-+|+.. -....|++++|++.++- -..+.|..++........+.+..++|.+|.+-.-..+ .+++.+|.
T Consensus 198 -L~~E~~-PKT~et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 198 -LLFETL-PKTDETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred -HHHhhc-CCCchhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 223332 23455666777766665 4566666666666666666666777766655433222 34444443
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 005642 168 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247 (686)
Q Consensus 168 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 247 (686)
.||..|+|+++++..+.|+++.|.. .|++++.+|++-|+.|...+|..++..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f 322 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNF 322 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 3554444444444444444443332 2445555555556666666666555555
Q ss_pred HccCChhh-HHHHHHHHHHc----CC----CchHHHHHHHHHHHHhcCChhHHHHHHHhcc--------cCC---chhHH
Q 005642 248 SSLGFLEH-GKQVHGHACKV----GV----IDDVIVASALLDTYSKRGMPSDACKLFSELK--------VYD---TILLN 307 (686)
Q Consensus 248 ~~~~~~~~-a~~~~~~~~~~----g~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~---~~~~~ 307 (686)
.+.++..+ +..++.++... .+ +.|...+..-+..|.+..+.+-|.++-.-.. .++ ..-|.
T Consensus 323 ~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr 402 (625)
T KOG4422|consen 323 KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYR 402 (625)
T ss_pred cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHH
Confidence 55544432 22233332221 11 1133344444555555555555555443333 111 12344
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 005642 308 TMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383 (686)
Q Consensus 308 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 383 (686)
.+....|+....+.-...++.|.. |++.+...++.+..-.|.++-.-+++.++...|..-.....
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------- 471 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------- 471 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH-----------
Confidence 555666666667777777777764 56667777778888888888888888888876643333222
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh---H-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005642 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---D-ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKW 459 (686)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (686)
+.++..+.+..+.|+...-..+-....++-. + ....-.+|.+..+ .....+.++..+.+.|..++|.++
T Consensus 472 -----eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~ 544 (625)
T KOG4422|consen 472 -----EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEM 544 (625)
T ss_pred -----HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHH
Confidence 2333333333333433322223233333222 1 1122334444433 445566677778999999999999
Q ss_pred HHHHHHhcCCCCChhHHH---HHHHHHHhcCChHHHHHHHHhC
Q 005642 460 FDAMKWQYHIDPEIEHYS---CMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+..+.+..+--|-....+ -+++.-.+..+...|...++-+
T Consensus 545 l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 545 LGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999865555455555555 4445555667777777777766
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3.4e-13 Score=135.93 Aligned_cols=279 Identities=11% Similarity=0.030 Sum_probs=209.2
Q ss_pred ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC------CchhHHHHHHHHHhCCCHHHHHHH
Q 005642 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY------DTILLNTMITVYSSCGRIEDAKHI 325 (686)
Q Consensus 252 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 325 (686)
+..+|...|..+-.. ..-+..+..-+..+|...+++++|.++|+.+... +...|.+.+.-+.+.-.+.---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456677777774443 3334466677788888888888888888877622 455666666554443322222222
Q ss_pred HhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcch
Q 005642 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404 (686)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 404 (686)
+-.+....+.+|.++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+.. ++
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DP 486 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----Cc
Confidence 2223334678899999999888999999998888876 345 5677777777777777888888887766532 11
Q ss_pred hHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHH
Q 005642 405 IISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLF 483 (686)
Q Consensus 405 ~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 483 (686)
. +...|-.+...|.+.++++.|.-.|+++. .+.| +......++..+
T Consensus 487 r------------------------------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 487 R------------------------------HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQ 533 (638)
T ss_pred h------------------------------hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHH
Confidence 1 33467778888999999999999999987 6778 678888899999
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHH
Q 005642 484 ARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 484 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
.+.|+.++|+++|+++ ...| |+..--..+..+...+++++|++.++++.++-|++..++..++.+|.+.|+.+.|..-
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 9999999999999998 3444 4555555677788899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 005642 562 RDIMREKHV 570 (686)
Q Consensus 562 ~~~~~~~~~ 570 (686)
+.-+.+..+
T Consensus 614 f~~A~~ldp 622 (638)
T KOG1126|consen 614 FSWALDLDP 622 (638)
T ss_pred hHHHhcCCC
Confidence 887776543
No 35
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.57 E-value=9.2e-10 Score=110.46 Aligned_cols=503 Identities=14% Similarity=0.119 Sum_probs=313.0
Q ss_pred HHHHHHHhhccCccchhhHHHHHHHHh-CCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcC
Q 005642 8 LARLLQSCNTHHSIHVGKQLHLHFLKK-GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86 (686)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 86 (686)
+...+.-.-..+++...+..|.+.+.. .+..+.. +|...+.+....|-++-+..++++-.+-++..-+.-|..++..+
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~r-IW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDR-IWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhcc-chHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 333333444456666777777777654 4556666 88888888888888888888888877767777788888889999
Q ss_pred CHHHHHHHHhhCCCC----------CcchHHHHHHHHHhcChhhHHH---HHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005642 87 HKEKSLQLFNVMPQK----------NDFSWNMLISGFAKADLAALEY---GKQIHSHILVNGLDFDSVLGSSLVNLYGKC 153 (686)
Q Consensus 87 ~~~~A~~~~~~m~~~----------~~~~~~~ll~~~~~~~~~~~~~---a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~ 153 (686)
++++|-+.+...... +...|.-+-...++. .+.-. ...+...++..-..-=...|++|.+.|.+.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~--p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN--PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC--cchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 999999998887641 233455554444444 12222 222333333221222245799999999999
Q ss_pred CChHHHHHHHhccCC--CChhhHHHHHHHHHc----------------cC------CHHHHHHHHhhcCC----------
Q 005642 154 GDFNSANQVLNMMKE--PDDFCLSALISGYAN----------------CG------KMNDARRVFDRTTD---------- 199 (686)
Q Consensus 154 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~----------------~g------~~~~A~~~~~~~~~---------- 199 (686)
|+++.|..++++... -++.-|..+.+.|.+ .| +++-....|+.+..
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 999999999988774 233334444444431 11 22223333443322
Q ss_pred -----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC------HHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 005642 200 -----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED------ASTLASVLSACSSLGFLEHGKQVHGHACKVGV 268 (686)
Q Consensus 200 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 268 (686)
.++..|..-+.. ..|+..+-+..|.+..+. +.|. ...|..+.+.|-..|+++.|+.+|++..+...
T Consensus 342 LRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 134455544443 467788888888888765 4442 33577788888899999999999999988765
Q ss_pred Cch---HHHHHHHHHHHHhcCChhHHHHHHHhcc-cC--------------------CchhHHHHHHHHHhCCCHHHHHH
Q 005642 269 IDD---VIVASALLDTYSKRGMPSDACKLFSELK-VY--------------------DTILLNTMITVYSSCGRIEDAKH 324 (686)
Q Consensus 269 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--------------------~~~~~~~li~~~~~~g~~~~A~~ 324 (686)
+.- ..+|..-..+=.+..+++.|.++.++.. -| +...|...++..-..|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 432 3466666777777888889998888765 11 22345666666667788888888
Q ss_pred HHhhCCCCCchhH---HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---ccCChHHHHHHHHHHHH
Q 005642 325 IFRTMPNKSLISW---NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLASVISACA---NISSLELGEQVFARVTI 397 (686)
Q Consensus 325 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---~~~~~~~a~~~~~~~~~ 397 (686)
+++++.+--+.|= -+....+-.+.-++++.++|++-+..=-.|+. ..|+..+.-+. ...+++.|..+|++.++
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 8888876322222 22222334455677888887765544223443 23444444433 33478889999998888
Q ss_pred hCCCcchhHHHHHHHHHHhchh------HHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 005642 398 IGLDSDQIISTSLVDFYCKCGY------DALALFNEMRNTGVKPTI--ITFTAILSACDHCGLVKEGQKWFDAMKWQYHI 469 (686)
Q Consensus 398 ~~~~~~~~~~~~li~~~~~~~~------~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 469 (686)
|++|. ....+.-.|++..+ .|+.++++... ++++.. ..|+..|.--+..=-+....++|++.++ .
T Consensus 579 -~Cpp~--~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe---~ 651 (835)
T KOG2047|consen 579 -GCPPE--HAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE---S 651 (835)
T ss_pred -cCCHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH---h
Confidence 55543 23333344444443 78888888644 344333 4577776644443334455677777763 2
Q ss_pred CCChh---HHHHHHHHHHhcCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCChhH
Q 005642 470 DPEIE---HYSCMVDLFARAGCLNEAVNLIEQMP--FEA--DVGMWSSILRGCVAHGDKGL 523 (686)
Q Consensus 470 ~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~li~~~~~~g~~~~ 523 (686)
-|+.. ...-..+.=.+.|.++.|..+|.-.. ..| +...|.+.=.--.++|+-+.
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 35433 33334455667888888888887663 344 45567777777778888444
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.5e-11 Score=114.70 Aligned_cols=284 Identities=12% Similarity=0.121 Sum_probs=185.7
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC------CchhHHHHHHHHHhCCC
Q 005642 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY------DTILLNTMITVYSSCGR 318 (686)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~ 318 (686)
.++......+++.+-.+.....|++.+...-+-...+.....++|+|+.+|+++.+. |..+|+.++-+--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444556666666666666666555555555555556666666666666666632 33455555443333222
Q ss_pred HHH-HHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 319 IED-AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 319 ~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
+.- |..++ .+.+=-+.|...+..-|.-.++.++|...|+...+.+ +-....++.+..-|...++...|.+.++.+++
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 221 22222 2233345667777777788888888888888887742 22334566666667777777777777777665
Q ss_pred hCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHH
Q 005642 398 IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHY 476 (686)
Q Consensus 398 ~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~ 476 (686)
.+ +.|...|-.|.++|.-.+...-|+-+|++.. ..+| |...|
T Consensus 393 i~----------------------------------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw 435 (559)
T KOG1155|consen 393 IN----------------------------------PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLW 435 (559)
T ss_pred cC----------------------------------chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHH
Confidence 43 2266778888888888888888888888876 4566 78888
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc-------cCCCCchhHHHHHH
Q 005642 477 SCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIE-------LDPENACAYIQLSS 547 (686)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~ 547 (686)
.+|+++|.+.++.++|++-|...- ...+...+..+...+.+.++.++|.+.+++.++ ..|+...+..-|+.
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~ 515 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAE 515 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 888888888888888888888773 222446677888888888888888888887777 33433344445667
Q ss_pred HHhhcCCcchHHHHHHHHHh
Q 005642 548 IFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~ 567 (686)
-+.+.+++++|..+......
T Consensus 516 ~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 516 YFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHhhcchHHHHHHHHHHhc
Confidence 77788888888887665543
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1e-09 Score=106.20 Aligned_cols=437 Identities=13% Similarity=0.107 Sum_probs=245.0
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC--CCh-hhHHHHHHHHHccCCHHHHHHHHhh
Q 005642 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDD-FCLSALISGYANCGKMNDARRVFDR 196 (686)
Q Consensus 120 ~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 196 (686)
+...|..+++..+... ..++..|-..+.+-.++..+..|+.++++... |-+ ..|--.+-+=-..|++..|.++|++
T Consensus 88 e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4444444444444433 22444444444555555555555555555442 211 1233333333344555555555554
Q ss_pred cC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc-CC-CchH
Q 005642 197 TT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GV-IDDV 272 (686)
Q Consensus 197 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~ 272 (686)
-. +|+..+|++.|..-.+.+..+.|..+|++..- +.|+..+|..-.+.=.+.|.+..+..+|+.+++. |- ..+.
T Consensus 167 W~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 167 WMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 33 25555555555555555555555555555544 3455555555555555555555555555555442 10 0111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcc---cCC--chhHHHHHHHHHhCCCHHHHHHH--------HhhCCCCCc---hh
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELK---VYD--TILLNTMITVYSSCGRIEDAKHI--------FRTMPNKSL---IS 336 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~~~---~~ 336 (686)
..+.+....=.++..++.|.-+|+-.. +.+ ...|..+..---+-|+.....+. ++.+...|+ .+
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDs 324 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDS 324 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchH
Confidence 223333333333444555555544333 111 12222222222222332222111 122222333 45
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HccCChHHHHHHHHHHHHhCCCcchhH
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF-------SLASVISAC---ANISSLELGEQVFARVTIIGLDSDQII 406 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~ 406 (686)
|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+--+| ....+.+.+.++|+..++. ++....+
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFt 402 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFT 402 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccch
Confidence 555555555667777777777777654 444221 111111111 2456777777777776662 3444555
Q ss_pred HHHHHHHHHhch----h--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHH
Q 005642 407 STSLVDFYCKCG----Y--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCM 479 (686)
Q Consensus 407 ~~~li~~~~~~~----~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l 479 (686)
+.-+--+|++-. + .|.+++-... |..|-.-+|...|..-.+.+++|....++++.. ...| +..+|...
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKY 477 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHH
Confidence 555544444322 1 5666666555 667888889988888889999999999999988 3556 78888888
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh-----
Q 005642 480 VDLFARAGCLNEAVNLIEQMPFEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA----- 550 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~----- 550 (686)
...=...|+.+.|..+|+-+..+|. ...|.+.|+--...|.++.|..+|+++++..+. ..+|...+.--.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h-~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH-VKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc-chHHHhHHHHhcccccc
Confidence 8888889999999999998854553 455888888888899999999999999997774 446877776544
Q ss_pred hcC-----------CcchHHHHHHHHHh
Q 005642 551 TSG-----------EWEKSSLIRDIMRE 567 (686)
Q Consensus 551 ~~g-----------~~~~a~~~~~~~~~ 567 (686)
+.| +...|..+|+....
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 334 55567777776653
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.4e-09 Score=103.78 Aligned_cols=454 Identities=11% Similarity=0.079 Sum_probs=325.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 005642 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 147 (686)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~ 147 (686)
+...|-.-...--.++++..|.++|++....| ...|.-.+..=.+. ..+..|..+++..+..-+..|. .|--.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 34455555555566788888999999987743 33333333332332 5677888899888876444343 333444
Q ss_pred HHHHhcCChHHHHHHHhccC--CCChhhHHHHHHHHHccCCHHHHHHHHhhc--CCCChhhHHHHHHHHHhcCChhHHHH
Q 005642 148 NLYGKCGDFNSANQVLNMMK--EPDDFCLSALISGYANCGKMNDARRVFDRT--TDTSSVMWNSMISGYISNNEDTEALL 223 (686)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 223 (686)
-+--..|++..|+++|++-. +|+...|.+.|..=.+-+.++.|..++++. ..|++.+|--...--.++|+...|..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 44456799999999999877 599999999999999999999999999985 46889999988888889999999999
Q ss_pred HHHHHHHCCCCc---CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChhHHHHHH---
Q 005642 224 LFHKMRRNGVLE---DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD--VIVASALLDTYSKRGMPSDACKLF--- 295 (686)
Q Consensus 224 ~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~--- 295 (686)
+|....+. +.. +...|.+....=.+...++.|.-+|+..+..= +.+ ...|..+...=-+-|+........
T Consensus 229 VyerAie~-~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEF-LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99988764 211 22233333333346678899999999988863 333 445666665555667755444432
Q ss_pred -----Hhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc-----hhHHHHHH--------HHHhCCChhhHH
Q 005642 296 -----SELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL-----ISWNSMIV--------GLSQNGSPIEAL 354 (686)
Q Consensus 296 -----~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~--------~~~~~g~~~~A~ 354 (686)
+.+. +-|-.+|-..++.-...|+.+...++|++....-+ ..|...|. .=....+.+.+.
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2222 33566788888888889999999999999865221 12222221 123568899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH----HccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHH
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISAC----ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEM 428 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m 428 (686)
++|+...+. ++....||..+=-.+ .+..++..|.+++..++ |..|...++...|+.-.+.++ .+..++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999884 666677877543333 47789999999999876 667888888888877777766 889999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 005642 429 RNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGM 507 (686)
Q Consensus 429 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 507 (686)
.+-++. |..+|......-...|+.|.|..+|+-++.+..+......|...|+.-...|.++.|..+|+++ ...+...+
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 887644 6788888888888899999999999999855444445667888888888999999999999998 34455557
Q ss_pred HHHHHHHHH-----hcC-----------ChhHHHHHHHHHHc
Q 005642 508 WSSILRGCV-----AHG-----------DKGLGRKVAERMIE 533 (686)
Q Consensus 508 ~~~li~~~~-----~~g-----------~~~~A~~~~~~~~~ 533 (686)
|-++..--. ..+ ++..|..+|+++..
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 766655432 333 46677888887776
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=4.6e-12 Score=121.19 Aligned_cols=198 Identities=16% Similarity=0.225 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHhhCCCCCchhH---HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 005642 316 CGRIEDAKHIFRTMPNKSLISW---NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392 (686)
Q Consensus 316 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 392 (686)
.|++++|.+.+.+....|...- ..+...+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4455555555555544443222 22223344556666666665555432 2334445555555566666666666665
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 005642 393 ARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470 (686)
Q Consensus 393 ~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 470 (686)
.+.... ++.++.+.+.|.+.|-+.|+ +|+...-+--. -++.+..|..-|...|....-+++++.+|++.. -+.
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liq 656 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQ 656 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcC
Confidence 544332 34556666666666666666 44444333221 245577888888888999999999999999876 578
Q ss_pred CChhHHHHHHHHH-HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 005642 471 PEIEHYSCMVDLF-ARAGCLNEAVNLIEQM--PFEADVGMWSSILRGCVAHG 519 (686)
Q Consensus 471 p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g 519 (686)
|+..-|..|+..| .+.|++.+|+++|+.. +++.|...+..|++.|...|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 9999998877654 5789999999999988 36668888888888887776
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=1.9e-14 Score=141.54 Aligned_cols=221 Identities=14% Similarity=0.218 Sum_probs=106.8
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 385 (686)
+.......++.+.|...++++... ++..+..++.. ...+++++|.+++.+..+. .++...+...+..+.+.+++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHH
Confidence 333333444444444444444432 23345555555 5677777777777665543 24455556666667777777
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005642 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465 (686)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (686)
+++.++++.+.... ..+++...|..+...+.+.|+.++|++.+++..+
T Consensus 127 ~~~~~~l~~~~~~~--------------------------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 127 DEAEELLEKLEELP--------------------------------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp HHHHHHHHHHHH-T-----------------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--------------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777766654321 1234777888888889999999999999999883
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 466 QYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 466 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
..| +......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++....|+|+...
T Consensus 175 ---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 ---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp ---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred ---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 456 57888899999999999999888887763 234566788899999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 543 IQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..++.++...|+.++|.++++++.+
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999886653
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=7.9e-11 Score=114.36 Aligned_cols=218 Identities=16% Similarity=0.130 Sum_probs=167.2
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhch--hHH
Q 005642 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--YDA 421 (686)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~A 421 (686)
+.-.|+.-.|..-|+..+.....++. .|.-+...|....+.++..+.|.++.+.+.. ++.+|..-.+++.-.+ ++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34568888999999999886433333 2777777889999999999999999887643 3444443333333333 388
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005642 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-P 500 (686)
Q Consensus 422 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 500 (686)
..=|++....... +...|..+..+.-+.++++++...|++.++ .++..++.|+....++..++++++|.+.|+.. .
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 8889888765322 446677777777788999999999999984 45557899999999999999999999999987 3
Q ss_pred CCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 501 FEAD---------VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 501 ~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.|+ +.+.-.++.. .-.+++..|..+++++++++|....+|..|+.+-.+.|+.++|+++|++...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4443 2222222222 2348999999999999999999999999999999999999999999997764
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=1.6e-10 Score=119.91 Aligned_cols=520 Identities=11% Similarity=0.041 Sum_probs=297.5
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 005642 27 LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102 (686)
Q Consensus 27 ~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 102 (686)
.+..+-..|+.|... +|..|+.-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.|+.+.+. +|.
T Consensus 12 fla~~e~~gi~PnRv-tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEISGILPNRV-TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHHhcCCCchh-hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 445556667777776 7777777777777777776 66666532 3345666666666666655544 556
Q ss_pred cchHHHHHHHHHhcChhhH---HHHHHHHHHHH----HcC-----------------CCCChhHHHHHHHHHHhcCChHH
Q 005642 103 DFSWNMLISGFAKADLAAL---EYGKQIHSHIL----VNG-----------------LDFDSVLGSSLVNLYGKCGDFNS 158 (686)
Q Consensus 103 ~~~~~~ll~~~~~~~~~~~---~~a~~i~~~~~----~~g-----------------~~~~~~~~~~l~~~~~~~g~~~~ 158 (686)
..||..|+.+|.+. ||+ +..++.+..+. ..| .-||.. +.+....-.|.++.
T Consensus 83 aDtyt~Ll~ayr~h--GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaq 157 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIH--GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQ 157 (1088)
T ss_pred hhHHHHHHHHHHhc--cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHH
Confidence 66677777777665 333 22222121111 112 122222 23333444577788
Q ss_pred HHHHHhccCC--CChhhHHHHHHHHHc-cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005642 159 ANQVLNMMKE--PDDFCLSALISGYAN-CGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 234 (686)
Q Consensus 159 A~~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 234 (686)
+++++..++. .+. .....+.-+.. ...+++-..+-+...+ +++.++.+++..-..+|+.+.|..++.+|++.|++
T Consensus 158 llkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 8888877773 111 11112333332 2334444444445544 88999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHH
Q 005642 235 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 314 (686)
Q Consensus 235 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 314 (686)
.+.+-|-.++-+ .++...+..+++.|...|+.|+..|+...+-.+.++|....+... .+....+++-+..-+
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAA 308 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHH
Confidence 998877777765 788888999999999999999999998877777776553322221 112222222222222
Q ss_pred hCCCHHHHHHHHhh---------CCC-------CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCC--CCC-CHHHHHHH
Q 005642 315 SCGRIEDAKHIFRT---------MPN-------KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRM-DKFSLASV 375 (686)
Q Consensus 315 ~~g~~~~A~~~~~~---------~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p-~~~t~~~l 375 (686)
-.| ..|.+.++. .++ .....|... .-...+|+-++...+-..|..-- ..+ +...|..+
T Consensus 309 ~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~ 385 (1088)
T KOG4318|consen 309 CRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL 385 (1088)
T ss_pred hcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH
Confidence 222 222222221 111 111233322 22333677777777766664321 122 22334444
Q ss_pred HHHHHccCChHHHHHHHH--HHHHhCCCcchhHHHHHHHHHHhchh-HHHHHHHHHHH----CCCCC-------CHHHHH
Q 005642 376 ISACANISSLELGEQVFA--RVTIIGLDSDQIISTSLVDFYCKCGY-DALALFNEMRN----TGVKP-------TIITFT 441 (686)
Q Consensus 376 l~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~li~~~~~~~~-~A~~~~~~m~~----~~~~p-------~~~~~~ 441 (686)
+.-|.+.-...-...++. ..+... .+...---+.+...+... .+++-+..+.. +...| -...-+
T Consensus 386 lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 386 LRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 444433322111111111 111110 000000011111111111 11221111111 11111 122345
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHH
Q 005642 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-----FEADVGMWSSILRGCV 516 (686)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~li~~~~ 516 (686)
.++..|++.-+..+++..-+... ..-+ ...|..|++.+......+.|..+.++.. +.-|..-+..+.+.+.
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 56667777767777765544443 1111 2678999999999999999999999884 3345666788888899
Q ss_pred hcCChhHHHHHHHHHHc---cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccce
Q 005642 517 AHGDKGLGRKVAERMIE---LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 579 (686)
+.+....+..+++++.+ ..|....+...+.+.....|+.+...+.++-+...|+.. .+..|.
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 99999999998888877 334445666777777888999999999999998888876 354444
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.1e-10 Score=112.73 Aligned_cols=295 Identities=12% Similarity=0.080 Sum_probs=165.0
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCch-hHHHHHHHHHhC
Q 005642 269 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI-SWNSMIVGLSQN 347 (686)
Q Consensus 269 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~ 347 (686)
..|...+-.....+.+.|....|+..|......-+..|.+-+....-..+.+.+..+....+..+.. .--.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3344444444555556666666777666665444444444443333333444443333333332211 111233445555
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHh---------
Q 005642 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD--SDQIISTSLVDFYCK--------- 416 (686)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~--------- 416 (686)
.+.++++.-.......|++.+...-+....+.....++++|+.+|+++.+...- .|..+|+.++-.-..
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 566666666666666666555554455555555667777777777777665321 244455444322222
Q ss_pred ----------------------chh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-
Q 005642 417 ----------------------CGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP- 471 (686)
Q Consensus 417 ----------------------~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p- 471 (686)
.++ +|...|++..+.+.. ....|+.+.+-|....+...|.+.++.++ .+.|
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~ 396 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPR 396 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCch
Confidence 211 666666666654322 23455555566666666666666666665 3445
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
|-..|-.|+++|.-.+.+.-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|++++...-.+..++..|+.+|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 5666666666666666666666666665 3444 5666666666666666666666666666665554556666666666
Q ss_pred hhcCCcchHHHHHHHHHh
Q 005642 550 ATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~ 567 (686)
.+.++.++|.+++.+-.+
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 666666666666655443
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.8e-10 Score=114.15 Aligned_cols=344 Identities=11% Similarity=0.053 Sum_probs=168.6
Q ss_pred hHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhcc--CCCCChhhHHHHHHHH
Q 005642 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MPRRNCFSWNAMIEGF 82 (686)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~ 82 (686)
..-+..+.+-|........|.-+-+++...+..|+.. -.+.++|.-.|+++.|..+... +.+.|..+.......+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~---~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI---YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH---HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 3455666777777777777877777777766555443 5677888888899888887754 4467888888899999
Q ss_pred HhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005642 83 MKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 161 (686)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 161 (686)
.+...+++|+.++..... .+.+.+-.-=.+..- ....+. .. .+.......+-.-...|....+.++|+.
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l----~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTL----ELNSAG----ED--LMINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhcee----ccCccc----cc--ccccchhceeeeeeehhhhhccHHHHHH
Confidence 999999999999984421 111111100000000 000000 00 0011111112222234445566777777
Q ss_pred HHhccCCCChhhHHHHHHHHHcc-CCHHHHHHHHhhcC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 005642 162 VLNMMKEPDDFCLSALISGYANC-GKMNDARRVFDRTT-----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235 (686)
Q Consensus 162 ~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 235 (686)
.+.+....|...+..+...-... -..++-..+|+... +.++..-..+.........-++....-.+..-.+..-
T Consensus 163 ~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~ 242 (611)
T KOG1173|consen 163 KYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAE 242 (611)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhh
Confidence 77776655555444433221110 00111222222211 0111111111111100000000100000000112233
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHH
Q 005642 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITV 312 (686)
Q Consensus 236 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 312 (686)
+.........-|...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++. +..+.+|-++..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 44444444555556666777777766666653 3344444444456666666554444433333 2234455555555
Q ss_pred HHhCCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 313 YSSCGRIEDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 313 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
|...|+.++|++.|.+...-|+ ..|-.....|+-.|..+.|+..|....+
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 5555666666666655544332 3555566666666666666655554433
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=7.4e-12 Score=126.41 Aligned_cols=279 Identities=11% Similarity=0.052 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC------CChhhHHHHHHHHHccCCHHHHHHH
Q 005642 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE------PDDFCLSALISGYANCGKMNDARRV 193 (686)
Q Consensus 120 ~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~ 193 (686)
..+.|...++. ....+..+.++...+..+|...+++++|+++|+.+.+ .+...|++.+..+-+.-...---+-
T Consensus 334 ~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 45677777777 3344455668899999999999999999999999874 4667888888766543222211112
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH
Q 005642 194 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 272 (686)
Q Consensus 194 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 272 (686)
+-...+..+.+|-++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+... +.+-
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhY 489 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHY 489 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhh
Confidence 2223344688999999999999999999999999988 456 67888888888889999999999999988753 2345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHh
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ 346 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 346 (686)
..|..|...|.+.++++.|+-.|+... +.+.+....+...+.+.|+.|+|++++++... .|+..-...+..+..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 577788999999999999999999887 44566777788899999999999999998764 577777778888899
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcc
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 403 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 403 (686)
.+++++|+..++++++. ++-+...|..+...|.+.|+.+.|..-|.-+.+...+..
T Consensus 570 ~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 570 LGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999985 334456677888899999999999999998887665443
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=7.9e-11 Score=121.33 Aligned_cols=274 Identities=14% Similarity=0.060 Sum_probs=173.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCChHHHHHHHhccCC--CChhhHH--HHHHHHHccCCHHHHHHH
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSL-VNLYGKCGDFNSANQVLNMMKE--PDDFCLS--ALISGYANCGKMNDARRV 193 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~ 193 (686)
|+++.|.+......+.. +++..+..+ ..+..+.|+++.|...+.++.+ |+...+. .....+...|+++.|...
T Consensus 98 Gd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56666665555433321 122222222 3333567778888877777764 4433232 224566777888888777
Q ss_pred HhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHccCChhhHHHHHHHH
Q 005642 194 FDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA-------STLASVLSACSSLGFLEHGKQVHGHA 263 (686)
Q Consensus 194 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~ 263 (686)
+++..+ .++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 776654 34667777788888888888888888888776544322 12333333333444455555555554
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHH
Q 005642 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSM 340 (686)
Q Consensus 264 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 340 (686)
.+. .+.++.....+...+...|+.++|.+.+++..+.....--.++.+....++.+++.+..+...+ .|+..+..+
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 333 3446667777788888888888888888776643222222334444556777777777776654 244566677
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
...+.+.+++++|.+.|+.+.+ ..|+..++..+...+.+.|+.++|.+++++...
T Consensus 335 grl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788888888888888888876 467888777888888888888888888776543
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=1.6e-10 Score=119.02 Aligned_cols=284 Identities=8% Similarity=0.001 Sum_probs=149.7
Q ss_pred cCCHHHHHHHHhhcCCC--Chhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHccCChhhHHH
Q 005642 184 CGKMNDARRVFDRTTDT--SSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA--SVLSACSSLGFLEHGKQ 258 (686)
Q Consensus 184 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 258 (686)
.|+++.|++.+.+..+. ++.. |-.......+.|+++.|.+.|.++.+ ..|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666554432 1222 22223333556666666666666654 234433222 22344555566666666
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCc---hhHHHHHHHHHhCCCHHHHHHHHhhCCCCCch
Q 005642 259 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT---ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 335 (686)
Q Consensus 259 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 335 (686)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .....+- ..
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~-----------------------~~ 230 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE-----------------------QQ 230 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH-----------------------HH
Confidence 666665554 23445555556666666666666655554432110 0000000 00
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 415 (686)
+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+.
T Consensus 231 a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----------------- 292 (398)
T PRK10747 231 AWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----------------- 292 (398)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------------
Confidence 1112222222222233333333333221 2233444444455555555555555554443331
Q ss_pred hchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHH
Q 005642 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVN 494 (686)
Q Consensus 416 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 494 (686)
+|++... ++.+....++.+++.+..+...+ ..| |+..+.++...+.+.|++++|.+
T Consensus 293 ------------------~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk---~~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 293 ------------------QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK---QHGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred ------------------CCCHHHH--HHHhhccCCChHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 2233211 22233455788888888887763 234 56677788888888888888888
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 005642 495 LIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534 (686)
Q Consensus 495 ~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 534 (686)
.|+.. ...|+...+..+...+.+.|+.++|.+.+++.+.+
T Consensus 350 ~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 350 AFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88877 46788888778888888888888888888887764
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=5.2e-10 Score=115.94 Aligned_cols=129 Identities=11% Similarity=-0.030 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-H--HHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH---YSCMVDLFARAGCLNEAVNLIEQM-PFEAD-V--GMW 508 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~--~~~ 508 (686)
++..+..+...+...|+.++|.+.+++..+ ..|+... .....-.....++.+.+.+.+++. +..|+ + ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 667777788888888888888888888873 2343321 111222223356777788877766 34454 3 456
Q ss_pred HHHHHHHHhcCChhHHHHHHH--HHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 509 SSILRGCVAHGDKGLGRKVAE--RMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.++...+.+.|++++|.+.++ .+.+..|++.. +..++.++.+.|+.++|.+++++....
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678888888899999988888 57767785544 678888899999999998888876543
No 49
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=5.7e-09 Score=97.46 Aligned_cols=467 Identities=12% Similarity=0.029 Sum_probs=247.8
Q ss_pred HHHHhcCCcHHHHHHhccCCCC---ChhhHH-HHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcChhhH
Q 005642 49 QMYMRCGNPTDALLLFDEMPRR---NCFSWN-AMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKADLAAL 121 (686)
Q Consensus 49 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~ 121 (686)
.-+....++..|+.+++--..- .....+ -+...+.+.|++++|+..|..+.+ ++...+. --+|+.--.+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v--nLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV--NLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch--hHHHHHHHHHHH
Confidence 3445567888888887654421 111222 234466788999999999987654 2332222 224444334566
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 005642 122 EYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 200 (686)
Q Consensus 122 ~~a~~i~~~~~~~g~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 200 (686)
.+|+++-.. .|+....+.|+ ..--+.|+-++-..+-+.+.+ ....--++.+..-..-.+++|+++++++...
T Consensus 108 ~eA~~~~~k------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEK------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhh------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666665443 23334444444 333345555444444433332 2233334444444555677888888877654
Q ss_pred C--hhhHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHH
Q 005642 201 S--SVMWNS-MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 277 (686)
Q Consensus 201 ~--~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 277 (686)
+ -...|. +.-+|.+..-++-+.+++.--++. ++.++.+.+.......+.=.-..|.+-.+.+.+.+-..-+
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~----- 254 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP----- 254 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----
Confidence 3 233333 344566667777777777776664 3333334443333333332333344444444443311111
Q ss_pred HHHHHHh-----cCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCC---
Q 005642 278 LLDTYSK-----RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS--- 349 (686)
Q Consensus 278 l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~--- 349 (686)
.+.-.++ -.+-+.|.+++-.+...=+.+-..|+--|.+++++.+|..+........+.-|-.-...++..|+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 1111122 12335566665554444444555666667777777777777777665455444333333333333
Q ss_pred ----hhhHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHH
Q 005642 350 ----PIEALDLFCNMNKLDLRMDKFS-LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALAL 424 (686)
Q Consensus 350 ----~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~ 424 (686)
..-|...|+..-+++...|... -.++.+++.-..++++.+-.+..+. .|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~----------------sY---------- 388 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE----------------SY---------- 388 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH----------------HH----------
Confidence 2233334433333333222211 1122222222333333333322221 11
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCCCCC
Q 005642 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY-SCMVDLFARAGCLNEAVNLIEQMPFEA 503 (686)
Q Consensus 425 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p 503 (686)
+..|...-..+.++.+..|++.+|.++|-.+. ...+ .|..+| ..|.++|.+.|.++-|++++-++....
T Consensus 389 --------F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~ 458 (557)
T KOG3785|consen 389 --------FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS 458 (557)
T ss_pred --------hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch
Confidence 22233334457788889999999999998765 2222 244454 456788899999999999998886444
Q ss_pred CHHH-HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCc
Q 005642 504 DVGM-WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGC 576 (686)
Q Consensus 504 ~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (686)
+..+ ...+...|.+.+.+=-|.+.|..+..++|. +..|. |+-.....+++.+....-.+.|..
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~ 522 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENWE---------GKRGACAGLFRQLANHKTDPIPIS 522 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC---------CccchHHHHHHHHHcCCCCCCchh
Confidence 4444 444556688999998888899888888884 33342 344445556666655444444543
No 50
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=5.6e-10 Score=101.61 Aligned_cols=367 Identities=10% Similarity=0.048 Sum_probs=198.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHH-HHHHHHH
Q 005642 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SALLDTY 282 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~ 282 (686)
+++.+..+.+..++++|++++..-.++ .| +....+.+..+|.+..++..|...++++... .|...-| -.-...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 455556666677777777777766554 23 4445555666666777777777777777664 3333322 2334556
Q ss_pred HhcCChhHHHHHHHhcccC-Cchh--HHHHHHHHHhCCCHHHHHHHHhhCCC-CCchhHHHHHHHHHhCCChhhHHHHHH
Q 005642 283 SKRGMPSDACKLFSELKVY-DTIL--LNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFC 358 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (686)
.+.+.+.+|.++...|... +... ...-.......+++..+..++++.+. .+..+.+...+...+.|++++|++-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 6677777777777766643 1111 11112233456777777777777773 455666666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchh---------------------HHHHHHHHHH--
Q 005642 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI---------------------ISTSLVDFYC-- 415 (686)
Q Consensus 359 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~li~~~~-- 415 (686)
...+.+--.....|+..+ +..+.|+.+.|.+...+++++|++..+. .-+.++.++.
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 776655444455666555 4456677777777777777766532111 1122333322
Q ss_pred -----hchh--HHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhc
Q 005642 416 -----KCGY--DALALFNEMRNT-GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARA 486 (686)
Q Consensus 416 -----~~~~--~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 486 (686)
+.++ .|.+-+.+|.-+ .-..|++|...+.-.-. .+++.+..+-+.-+. ++.| ..+||..++-.|++.
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL---~~nPfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLL---QQNPFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHH---hcCCCChHHHHHHHHHHhhh
Confidence 1111 333333333211 12234455444422111 122333333333333 2334 445555555555555
Q ss_pred CChHHHHHHHHhCCC---C-CCHHHHH----------------------------------HHHHHHHhcCC---hhHHH
Q 005642 487 GCLNEAVNLIEQMPF---E-ADVGMWS----------------------------------SILRGCVAHGD---KGLGR 525 (686)
Q Consensus 487 g~~~~A~~~~~~~~~---~-p~~~~~~----------------------------------~li~~~~~~g~---~~~A~ 525 (686)
.-++-|-+++.+-.. + .+...|+ .-+..-+..++ ...|+
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 555555555443310 0 0011111 11111111222 12233
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccceeeccccc
Q 005642 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNC 586 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (686)
+-+++.+++. -++.+..+++|++..++..+++.|+...+. +.....|....++..
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef---C~ehd~WkLNvaHvl 458 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF---CNDHDVWKLNVAHVL 458 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh---hcccceeeecccccc
Confidence 4444444432 246888999999999999999999988876 556667887776543
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=1.1e-12 Score=129.03 Aligned_cols=249 Identities=18% Similarity=0.194 Sum_probs=104.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcc-CC---C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcC
Q 005642 145 SLVNLYGKCGDFNSANQVLNMM-KE---P-DDFCLSALISGYANCGKMNDARRVFDRTTDT---SSVMWNSMISGYISNN 216 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~-~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 216 (686)
.+...+.+.|++++|++++++. .. | |...|..+.......++++.|...++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5577788889999999999543 22 2 3444555666677788999999999888764 34466667766 6889
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhHHHHHH
Q 005642 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLF 295 (686)
Q Consensus 217 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 295 (686)
++++|.+++.+..+. .++...+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999988877654 3566677778888888999999999998877543 3567778888889999999999999999
Q ss_pred Hhcc--cC-CchhHHHHHHHHHhCCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH
Q 005642 296 SELK--VY-DTILLNTMITVYSSCGRIEDAKHIFRTMP---NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 369 (686)
Q Consensus 296 ~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 369 (686)
++.. .| |....+.++..+...|+.+++.+++.... ..|+..|..+..++...|++++|+..|++..+. .+.|.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~ 248 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDP 248 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-H
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-ccccc
Confidence 8887 34 56778888889999999888776666554 356778889999999999999999999998875 34477
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 370 FSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 370 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
.+...+..++...|+.++|.++..++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 7788889999999999999998876543
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=3.4e-10 Score=117.37 Aligned_cols=287 Identities=13% Similarity=0.017 Sum_probs=161.9
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhccCC--CChh--hHHHHHHHHH
Q 005642 108 MLISGFAKADLAALEYGKQIHSHILVNGLDFDS-VLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDF--CLSALISGYA 182 (686)
Q Consensus 108 ~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~li~~~~ 182 (686)
.+.++......|+++.|.+......+.. |+. ..+-....++.+.|+.+.|.+.+++..+ |+.. ........+.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 3444444444466677776666655542 332 2233344556666777777777776543 3332 2223456666
Q ss_pred ccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHH---HccCChhhH
Q 005642 183 NCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC---SSLGFLEHG 256 (686)
Q Consensus 183 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a 256 (686)
..|+++.|...++++.+ .+..++..+...+.+.|++++|.+++..+.+.++.+.......-..+. ...+..+.+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777777777776554 245566777777777777777777777777765432222111111111 122222222
Q ss_pred HHHHHHHHHcCC---CchHHHHHHHHHHHHhcCChhHHHHHHHhccc--CCchh---HHHHHHHHHhCCCHHHHHHHHhh
Q 005642 257 KQVHGHACKVGV---IDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTIL---LNTMITVYSSCGRIEDAKHIFRT 328 (686)
Q Consensus 257 ~~~~~~~~~~g~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~ 328 (686)
.+.+..+.+... +.+...+..++..+...|+.++|.+++++..+ ||... ...........++.+.+.+.+++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 334444333321 12566667777777777777777777777663 33221 11222223334566666666665
Q ss_pred CCC--C-Cc--hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 329 MPN--K-SL--ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 329 ~~~--~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
..+ | |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 543 2 33 34456667777777777777777743333346777777777777777777777777777543
No 53
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=5e-09 Score=104.57 Aligned_cols=428 Identities=11% Similarity=0.071 Sum_probs=226.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHH--HHHHHH--ccCCHHHHHHHH
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA--LISGYA--NCGKMNDARRVF 194 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~~~--~~g~~~~A~~~~ 194 (686)
+++++|.+....++..+ +.|...+..=+.+..+.+.+++|+.+.+.-.... +++. +=.+|| +.+..|+|...+
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHHHHHH
Confidence 67777777777777765 4456666666667777788888886665543211 1121 234443 677778887777
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc--h
Q 005642 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--D 271 (686)
Q Consensus 195 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~ 271 (686)
+-..+.+..+-..-...+-+.|++++|+.+|+.+.+.+.+- +...-..++.+-... .+ + .+......| +
T Consensus 103 ~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~-~---~~q~v~~v~e~s 174 (652)
T KOG2376|consen 103 KGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV-Q---LLQSVPEVPEDS 174 (652)
T ss_pred hcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH-H---HHHhccCCCcch
Confidence 74444444455555666677778888888888776654322 111222222221110 01 0 111111112 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhcc--------cCC-----ch-----hHHHHHHHHHhCCCHHHHHHHHhhCCCC-
Q 005642 272 VIVASALLDTYSKRGMPSDACKLFSELK--------VYD-----TI-----LLNTMITVYSSCGRIEDAKHIFRTMPNK- 332 (686)
Q Consensus 272 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~- 332 (686)
-..+-.....+...|++.+|++++.... ..| .. .-..|..++...|+.++|.+++......
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 2222334556667777777777777662 111 11 1223444566667777777766665542
Q ss_pred --Cc----hhHHHHHHHHHhCCChh-hHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 333 --SL----ISWNSMIVGLSQNGSPI-EALDLFCNMNKLDLRM----------DKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 333 --~~----~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
|. +.-|.++..-....-++ .++..++........- .....|..+-. ...+..+.+.++-.
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~-l~tnk~~q~r~~~a-- 331 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA-LFTNKMDQVRELSA-- 331 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHH--
Confidence 22 12233332222222222 1222222221110000 00001100000 01111122221111
Q ss_pred HHhCCCcchhHHHHHHHHHHhchh----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------HH
Q 005642 396 TIIGLDSDQIISTSLVDFYCKCGY----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFD--------AM 463 (686)
Q Consensus 396 ~~~~~~~~~~~~~~li~~~~~~~~----~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~--------~~ 463 (686)
..-.......+..++....++.. .+.+++....+....-........+......|+++.|.+++. .+
T Consensus 332 -~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 332 -SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred -hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 11111112233334333333322 566666665544333234566667777888999999999998 43
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 005642 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-----FEADVG----MWSSILRGCVAHGDKGLGRKVAERMIEL 534 (686)
Q Consensus 464 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~ 534 (686)
. .+.-.+.+...++..+.+.++.+.|..++.+.. ..+... ++.-++..-.++|+-++|..+++++++.
T Consensus 411 ~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 411 L---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred h---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 3 222345566778888898888777777776651 122222 2333344445779999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 535 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
+|++......+..+|+.. +.+.|..+-+.+
T Consensus 488 n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 488 NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999998766 477777765543
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=1.7e-07 Score=94.62 Aligned_cols=493 Identities=13% Similarity=0.164 Sum_probs=270.0
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcchHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 005642 58 TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKADLAALEYGKQIHSHIL 132 (686)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~ 132 (686)
+.+.....+|++ .|-.-+..+..+|++..-...|++... .....|...++...+. +-++.+..+++.-+
T Consensus 92 er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~--~lPets~rvyrRYL 165 (835)
T KOG2047|consen 92 ERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH--GLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC--CChHHHHHHHHHHH
Confidence 334444444432 344444444555555555555554432 1233455555444444 33445555555554
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC----------CChhhHHHHHHHHHccCC---HHHHHHHHhhcCC
Q 005642 133 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----------PDDFCLSALISGYANCGK---MNDARRVFDRTTD 199 (686)
Q Consensus 133 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~ 199 (686)
+. ++..-+..+..+++.+++++|-+.+..... .+...|.-+....++.-+ --....+++.+..
T Consensus 166 k~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 166 KV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred hc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 43 222244455555566666666665555542 122233333333332211 1222333444433
Q ss_pred C--C--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcc----------------C------Ch
Q 005642 200 T--S--SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL----------------G------FL 253 (686)
Q Consensus 200 ~--~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~------~~ 253 (686)
+ | -..|++|..-|.+.|.+++|.++|++.+..- ....-|..+.++|+.- + ++
T Consensus 242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 2 2 2346666666666666666666666655431 1222233333332211 1 11
Q ss_pred hhHHHHHHHHHHcC-----------CCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cC------CchhHHHHHHHH
Q 005642 254 EHGKQVHGHACKVG-----------VIDDVIVASALLDTYSKRGMPSDACKLFSELK---VY------DTILLNTMITVY 313 (686)
Q Consensus 254 ~~a~~~~~~~~~~g-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~------~~~~~~~li~~~ 313 (686)
+-...-++.+.... -+.++..|..-+.. ..|+..+-...|.+.. .| -...|..+.+.|
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH
Confidence 22222233333221 12233444333332 2455666666666654 11 123688888999
Q ss_pred HhCCCHHHHHHHHhhCCCCCc-------hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-----------------CH
Q 005642 314 SSCGRIEDAKHIFRTMPNKSL-------ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-----------------DK 369 (686)
Q Consensus 314 ~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------------~~ 369 (686)
-..|+++.|..+|++..+-+- .+|......=.++.+++.|+++.+......-.| +.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 999999999999998876322 356666666677888888988887765431111 12
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh---HHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 005642 370 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---DALALFNEMRNTGVKPTI-ITFTAILS 445 (686)
Q Consensus 370 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~A~~~~~~m~~~~~~p~~-~~~~~ll~ 445 (686)
..|...++.-...|-++....+|+.+++..+.....+-|-- ++..... ++.+.+++-...=..|+. ..|+..+.
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA--mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA--MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 23445555556678888888999998887765333322211 1111111 666666653332223444 45666665
Q ss_pred HHhc---cCCHHHHHHHHHHHHHhcCCCCC-h-hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHH
Q 005642 446 ACDH---CGLVKEGQKWFDAMKWQYHIDPE-I-EHYSCMVDLFARAGCLNEAVNLIEQMP--FEAD--VGMWSSILRGCV 516 (686)
Q Consensus 446 ~~~~---~g~~~~A~~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~li~~~~ 516 (686)
-+.+ .-..+.|..+|++..+ +.+|. . ..|......=.+.|....|+.++++.. .++. ...|+..|.-..
T Consensus 556 kfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5443 3478999999999983 66663 2 233334444456789999999999983 4432 455777776555
Q ss_pred hcCChhHHHHHHHHHHccCCCCch--hHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 517 AHGDKGLGRKVAERMIELDPENAC--AYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..=-+.....+|+++++.-|+... .....+..-++.|..+.|+.++..-.+.
T Consensus 634 e~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 443466678899999998886432 3445567778899999999998865543
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.9e-09 Score=104.98 Aligned_cols=212 Identities=11% Similarity=0.037 Sum_probs=152.7
Q ss_pred HccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 005642 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457 (686)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 457 (686)
.-.|+.-.+..-|+.+++....++. .|--+..+|....+ +....|.+..+-+.. |+.+|..-.+...-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 4458888899999998887655443 14444444554444 888888888876544 5566776667777788999999
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 005642 458 KWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIEL 534 (686)
Q Consensus 458 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 534 (686)
.=|++.+ .+.| +...|-.+.-+..|.+.++++...|++.. ++.-+..|+.....+..+++++.|.+.|+.++++
T Consensus 415 aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999987 5777 57788888888889999999999999983 5445788888999999999999999999999999
Q ss_pred CCC------CchhHHHHHHHHhh-cCCcchHHHHHHHHHhcCCCCCCCccceeeccccceeehhhhhhhhcHH
Q 005642 535 DPE------NACAYIQLSSIFAT-SGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTMFLQLANFD 600 (686)
Q Consensus 535 ~p~------~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (686)
.|. ++.++..-+-+..+ .+++..|..++++..+ .+|.+-..+.-.+.+-.+.+...++...+
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e----~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE----LDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc----cCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 998 55555544433322 3788888888886655 56665544444444444444444444433
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=7.2e-09 Score=98.97 Aligned_cols=283 Identities=15% Similarity=0.096 Sum_probs=160.5
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHH
Q 005642 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 294 (686)
Q Consensus 215 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 294 (686)
.|+|..|.++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.++.+....++..+.-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776554322 23344455556667777777777777777754455666666666777777777777665
Q ss_pred HHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-----
Q 005642 295 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK----- 369 (686)
Q Consensus 295 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----- 369 (686)
++++. +|...++........+|.+.|++.....++.+|.+.|.--++
T Consensus 176 v~~ll----------------------------~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l 227 (400)
T COG3071 176 VDQLL----------------------------EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL 227 (400)
T ss_pred HHHHH----------------------------HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH
Confidence 55432 333345556666666677777777777777777666644433
Q ss_pred --HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 370 --FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 370 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
.++..++.-+...+..+.-...|+..-+ ..+-++..-.+++.-+
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr----------------------------------~lr~~p~l~~~~a~~l 273 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPR----------------------------------KLRNDPELVVAYAERL 273 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccH----------------------------------HhhcChhHHHHHHHHH
Confidence 2344444444444444333333333211 1122444455555566
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-P-FEADVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~ 525 (686)
.+.|+.++|.++..+..+ .+.+|+. +..-...+-++.+.-++..++. + .+.++..+.+|...|.+++.+.+|.
T Consensus 274 i~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 274 IRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHH
Confidence 666666666666666652 3444441 1111223444444444444333 1 1123355666666667777777777
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
..++.+++..|+ ...|..++.++.+.|+.++|.+.+++..
T Consensus 349 ~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 349 EALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 777766666663 3446667777777777777776666555
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.4e-09 Score=102.92 Aligned_cols=477 Identities=12% Similarity=0.040 Sum_probs=268.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHhccCC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhC--CCCCcchHHHHHHHHHhcCh
Q 005642 43 IANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM--PQKNDFSWNMLISGFAKADL 118 (686)
Q Consensus 43 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~ 118 (686)
-+..++.-+..+.++.-|.-+-+++. ..|+.--.-+..++.-.|.++.|..+...- .+.|..+.......+.+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l-- 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL-- 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH--
Confidence 34455555556666777776666654 233333345566666777777776666543 223433333333333333
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C---ChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-G---DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 194 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~-g---~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 194 (686)
.+.+.+..++... .+..++..| |.+. + ..+.+.+.. +.......+-.-...|....+.++|...|
T Consensus 96 k~~~~al~vl~~~---~~~~~~f~y------y~~~~~~~l~~n~~~~~~--~~~~essic~lRgk~y~al~n~~~ar~~Y 164 (611)
T KOG1173|consen 96 KEWDQALLVLGRG---HVETNPFSY------YEKDAANTLELNSAGEDL--MINLESSICYLRGKVYVALDNREEARDKY 164 (611)
T ss_pred HHHHHHHHHhccc---chhhcchhh------cchhhhceeccCcccccc--cccchhceeeeeeehhhhhccHHHHHHHH
Confidence 4444444444321 001111111 1111 0 011111000 00000111111223466677888888888
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc
Q 005642 195 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG----VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270 (686)
Q Consensus 195 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 270 (686)
.+....|+..+.++...-.. ..-.+.+.+..+...+ ...+......+.........-+.....-++..-.+...
T Consensus 165 ~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~ 242 (611)
T KOG1173|consen 165 KEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAE 242 (611)
T ss_pred HHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhh
Confidence 88777776665554432211 1112222233332211 11222233223222210000000000001011112344
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhcccCC---chhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHH
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGL 344 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 344 (686)
+........+-+...+++.+..++++.+.+.| ...+..-|.++...|+..+-..+=.++.+ ..+.+|-++..-|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 55666666777777788888888887766433 33444445566666665544444444443 2446777777777
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHH
Q 005642 345 SQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA 423 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~ 423 (686)
...|+..+|.+.|.+.... .|. ...|.....+++-.|.-++|...+..+-+.
T Consensus 323 l~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl------------------------- 375 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL------------------------- 375 (611)
T ss_pred HHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-------------------------
Confidence 7777777777777776542 222 234556666666666666666666544331
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 005642 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-- 500 (686)
Q Consensus 424 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 500 (686)
|. |.. -+..| +.--|.+.++.+.|.+.|.+.. ++.| |+..++-++-.....+.+.+|...|+...
T Consensus 376 -~~-----G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 376 -MP-----GCH-LPSLY--LGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred -cc-----CCc-chHHH--HHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 11 111 12223 3336788899999999999877 6777 67888888888888899999999998762
Q ss_pred ------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCC
Q 005642 501 ------FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKL 573 (686)
Q Consensus 501 ------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 573 (686)
..+ -.++++.|..+|++.+.+++|+..+++++.+.|.++.++..++-+|...|+++.|.+.+.+..- ..
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~----l~ 519 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA----LK 519 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh----cC
Confidence 111 3466888999999999999999999999999999999999999999999999999999886654 44
Q ss_pred CCcc
Q 005642 574 PGCS 577 (686)
Q Consensus 574 ~~~~ 577 (686)
|.+.
T Consensus 520 p~n~ 523 (611)
T KOG1173|consen 520 PDNI 523 (611)
T ss_pred CccH
Confidence 5554
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=2.1e-09 Score=99.35 Aligned_cols=209 Identities=13% Similarity=0.083 Sum_probs=125.4
Q ss_pred CChHHHHHHHhccCCCChhhHH---HHHHHHHccCCHHHHHHHHhhcCC-CC------hhhHHHHHHHHHhcCChhHHHH
Q 005642 154 GDFNSANQVLNMMKEPDDFCLS---ALISGYANCGKMNDARRVFDRTTD-TS------SVMWNSMISGYISNNEDTEALL 223 (686)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~g~~~~A~~ 223 (686)
++.++|.+.|-+|.+.|..|+. ++.+.|-+.|.+|.|+++...+.+ || ..+...|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 5667777777777665444443 455666677777777777665543 33 1234456666777777777777
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH----HHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV----IVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 224 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+|..+.+.| .--..+.-.|+..|-...++++|.++-+++.+.+..+.. ..|..|...+....+++.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 777776543 223445566777777777777777777777776544332 245556666666667777777776655
Q ss_pred cC---CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc----hhHHHHHHHHHhCCChhhHHHHHHHHHHC
Q 005642 300 VY---DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKL 363 (686)
Q Consensus 300 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (686)
+. .+.+--.+.+.....|+++.|.+.++.+.+.|+ .+...+..+|.+.|+.++....+..+.+.
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 22 233344455555556666666666655555444 23444555666666666666666665554
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=4.2e-09 Score=109.67 Aligned_cols=248 Identities=11% Similarity=0.100 Sum_probs=156.0
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC----CChhhHHHHHHHHHccCCHHHHHHHHhhcCCCC
Q 005642 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTS 201 (686)
Q Consensus 126 ~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 201 (686)
.++..+...|+.|+..+|.++|.-||..|+.+.|- +|.-|.- .+...++.++.+..+.++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35667788899999999999999999999999998 8877763 34457888888888888887776 677
Q ss_pred hhhHHHHHHHHHhcCChhH---HHHHHHHHH----HCCCCcCHHHHHHHHHHHHccC-Ch------hhHHHHHHHHHHcC
Q 005642 202 SVMWNSMISGYISNNEDTE---ALLLFHKMR----RNGVLEDASTLASVLSACSSLG-FL------EHGKQVHGHACKVG 267 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~~-~~------~~a~~~~~~~~~~g 267 (686)
+.+|..|..+|.++|+... +.+.+.... ..|+.....-+-..+++|-+.- +. .--+.++...++.+
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998754 222122221 1233222222222222221110 00 01112222333322
Q ss_pred --CCchHHHHHH--HHHHHH-hcCChhHHHHHHHhcc-cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC----chhH
Q 005642 268 --VIDDVIVASA--LLDTYS-KRGMPSDACKLFSELK-VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS----LISW 337 (686)
Q Consensus 268 --~~~~~~~~~~--l~~~~~-~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 337 (686)
.|........ .++-.. ....+++-........ .+++.++..++.+-...|+++.|..++.+|.+.+ ..-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 1111110000 111111 1222333333333333 4788899999999999999999999999998753 3344
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 005642 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 384 (686)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 384 (686)
-.++.+ .++...+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 455544 77788888888999999999999999877777766443
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=1.1e-08 Score=105.42 Aligned_cols=420 Identities=15% Similarity=0.073 Sum_probs=222.9
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC----C-ChhhHHH
Q 005642 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD----T-SSVMWNS 207 (686)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~ 207 (686)
+..|..+|-.|.-+..++|+++.+-+.|++... .....|..+...|...|.--.|..+++.-.. | ++..+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455666666666666666666666666666553 3344566666666666666666666654332 1 1222222
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHHC--CC--CcCHHHHHHHHHHHHcc----C-------ChhhHHHHHHHHHHcCCCch
Q 005642 208 MISGYIS-NNEDTEALLLFHKMRRN--GV--LEDASTLASVLSACSSL----G-------FLEHGKQVHGHACKVGVIDD 271 (686)
Q Consensus 208 li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g~~~~ 271 (686)
.-..|.+ -+.+++++++-.+.... +. ......|..+.-+|... . ...++.+.+++.++.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 2222322 24455555555555441 10 11122222222222111 0 123444555555554421 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhcc----cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHH---HHHHHH
Q 005642 272 VIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN---SMIVGL 344 (686)
Q Consensus 272 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~ 344 (686)
+.+...+.--|...++++.|.+...+.. ..+...|..|.-.+...+++.+|+.+.+...+.-..-++ .-+..-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 2333334444555566666666555544 224555666666666666666666655544331111111 111122
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhchhHHH
Q 005642 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI--IGLDSDQIISTSLVDFYCKCGYDAL 422 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~A~ 422 (686)
..-++.++++.....+... .+ +...+ ...++-....+....+.- ........++..+.......+..+.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~-we-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLAL-WE-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhcccHHHHHHHHHHHHHH-HH-hhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 2234444444443333221 00 00000 000000000111110000 0001111122222211111111000
Q ss_pred HHHHHHHHCCCC--CC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHH
Q 005642 423 ALFNEMRNTGVK--PT------IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAV 493 (686)
Q Consensus 423 ~~~~~m~~~~~~--p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 493 (686)
.-. .+...... |+ ...|......+.+.+..++|...+.+.. ++.| ....|...+..+...|..++|.
T Consensus 629 se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 000 01111111 22 1245556667888999999998888876 4556 6788888889999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 494 NLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRK--VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 494 ~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+++.+|.+..+|..++.++.+.|+.++|.+.|....+..
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 999877 47775 6778899999999999888887 9999999999999999999999999999999999999887643
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=2.2e-09 Score=109.96 Aligned_cols=129 Identities=12% Similarity=0.212 Sum_probs=103.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcC--CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCC
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYH--IDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMP---------FEA 503 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p 503 (686)
.++.+...|...+++++|..+++...+... ..++ ..++..|...|.+.|++++|.++++++- ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 466677789999999999999998765433 2222 4689999999999999999999999871 122
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHc----cCC---CCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 504 D-VGMWSSILRGCVAHGDKGLGRKVAERMIE----LDP---ENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 504 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
. ...++.+...|.+.+++++|.++|.+... ..| +...+|..|+.+|...|++++|.++...+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 45578888999999999999999988776 344 4456789999999999999999999887763
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.2e-08 Score=94.35 Aligned_cols=294 Identities=12% Similarity=0.083 Sum_probs=178.4
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHhcCChhHH
Q 005642 215 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDA 291 (686)
Q Consensus 215 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A 291 (686)
+++.++|+++|-+|.+.. +-+..+-.+|.+.|.+.|..+.|..++..+.+..--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888887731 23344556677777788888888888887776521111 11233445555555555555
Q ss_pred HHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 005642 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 368 (686)
+.+|. .+.+.+ ......++..|-...+|++|++.-+++.+.+-++.
T Consensus 127 E~~f~-------------------------------~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 127 EDIFN-------------------------------QLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred HHHHH-------------------------------HHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 55555 444422 23455667777777777777777777766554433
Q ss_pred HH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005642 369 KF----SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAIL 444 (686)
Q Consensus 369 ~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 444 (686)
.. -|.-+........+++.|...+.+..+.+ .+ ....-..+.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~---------------------------------~~-cvRAsi~lG 221 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQAD---------------------------------KK-CVRASIILG 221 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC---------------------------------cc-ceehhhhhh
Confidence 22 12233333333445555555554444322 11 223333455
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhH
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGL 523 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~ 523 (686)
......|+++.|.+.++...+ .+..--+.+...|..+|...|+.++...++.++ ...+....-..+...-....-.+.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDA 300 (389)
T ss_pred HHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHH
Confidence 667788899999999888873 232224677888888999999999988888876 344454444444444444444677
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHH-h--hcCCcchHHHHHHHHHhcCCCCCCCc
Q 005642 524 GRKVAERMIELDPENACAYIQLSSIF-A--TSGEWEKSSLIRDIMREKHVGKLPGC 576 (686)
Q Consensus 524 A~~~~~~~~~~~p~~~~~~~~l~~~~-~--~~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (686)
|...+.+-+..+|+- ..+..++... . ..|++.+-...++.|....++..|..
T Consensus 301 Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 301 AQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 777777777778854 3344444433 2 34567777778888887767666654
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=2.1e-09 Score=102.90 Aligned_cols=199 Identities=11% Similarity=0.017 Sum_probs=152.5
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 413 (686)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 3456677778888888888888888877642 3345566677777778888888888877766543
Q ss_pred HHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005642 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493 (686)
Q Consensus 414 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 493 (686)
+.+...+..+...+...|++++|.+.+++.............+..+...+...|++++|.
T Consensus 96 --------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 96 --------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred --------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 124456666777788889999999999998742222224567777888899999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 494 NLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 494 ~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++...|++++|..+.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 156 KYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999887 3344 4667888888899999999999999999988888878888888999999999999998887764
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=5.1e-08 Score=93.28 Aligned_cols=94 Identities=6% Similarity=-0.037 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 005642 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 284 (686)
|..-+.+--+.|+.+.+-.++.+.-+.--.++...+.+..+.....|+.+.|..-..++.+.+ +-++.+.....++|.+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~ 199 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIR 199 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 333344444555666666666655543223333344444445555566666666666655554 2244455555566666
Q ss_pred cCChhHHHHHHHhcc
Q 005642 285 RGMPSDACKLFSELK 299 (686)
Q Consensus 285 ~g~~~~A~~~~~~~~ 299 (686)
.|++.....++..+.
T Consensus 200 ~g~~~~ll~~l~~L~ 214 (400)
T COG3071 200 LGAWQALLAILPKLR 214 (400)
T ss_pred hccHHHHHHHHHHHH
Confidence 666666665555444
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=8.1e-10 Score=101.91 Aligned_cols=225 Identities=11% Similarity=0.042 Sum_probs=171.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccC
Q 005642 307 NTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA-SVISACANIS 383 (686)
Q Consensus 307 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~ 383 (686)
+.+.++|.+.|-+.+|.+.|+...+ |-+.||..+-..|.+..++..|+.+|.+-.+. .|-.+||. ...+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 3556666666666666666666544 56678888888888888888888888877764 56556554 4555556666
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005642 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463 (686)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (686)
+.++|.++|+...+.. +.+......+...|.-.++++.|+.+++++
T Consensus 305 ~~~~a~~lYk~vlk~~----------------------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH----------------------------------PINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred hHHHHHHHHHHHHhcC----------------------------------CccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 6777666666665532 224455555666777788899999999988
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 464 KWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEAD--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 464 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
. +.|+ .+++.|..+.-+|.-.++++-++.-|++.. ..|+ ...|-.+.......||+..|.+.|+-++..+|++
T Consensus 351 L-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 L-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred H-HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 8 4564 477888888888888888998888888762 3344 5678889999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 539 ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..++++|+-.-.+.|+.++|+.++.......
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999999877643
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=5.6e-07 Score=91.32 Aligned_cols=220 Identities=10% Similarity=0.047 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHH
Q 005642 106 WNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYA 182 (686)
Q Consensus 106 ~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 182 (686)
|...++.|-. +.++.+.+..+.+++ +.+-...+.....-.+...|+-++|......... .+.+.|..+.-.+-
T Consensus 11 F~~~lk~yE~---kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCYET---KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHH---HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 3444444432 345555555555555 2333334444444444455666666666555543 22344555555555
Q ss_pred ccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHccCChhhHHH
Q 005642 183 NCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQ 258 (686)
Q Consensus 183 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~ 258 (686)
...++++|+..|..... .|...|.-+...-++.++++.....-....+. .|. ...|..+..+.--.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554332 23444554444445555555555555444442 222 2234444444444555555555
Q ss_pred HHHHHHHcC-CCchHHHHHHH------HHHHHhcCChhHHHHHHHhcccC--Cch-hHHHHHHHHHhCCCHHHHHHHHhh
Q 005642 259 VHGHACKVG-VIDDVIVASAL------LDTYSKRGMPSDACKLFSELKVY--DTI-LLNTMITVYSSCGRIEDAKHIFRT 328 (686)
Q Consensus 259 ~~~~~~~~g-~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~ 328 (686)
+.+...+.. -.|+...+... .....+.|.++.|.+.+....+. |-. .-..-...+.+.+++++|..++..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 555554443 12333322111 12223344444454444433311 111 112333444555555555555555
Q ss_pred CCC
Q 005642 329 MPN 331 (686)
Q Consensus 329 ~~~ 331 (686)
+..
T Consensus 245 Ll~ 247 (700)
T KOG1156|consen 245 LLE 247 (700)
T ss_pred HHh
Confidence 544
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=6.1e-07 Score=91.06 Aligned_cols=451 Identities=13% Similarity=0.103 Sum_probs=252.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005642 74 SWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151 (686)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~ 151 (686)
.|..++..| ..+++...+...+.+.. |... =+..+.++.-...++.+.|......-++..+ -+.+.|+.+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHg-eslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHG-ESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccc-hhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 344555544 44556666665555543 2111 1112233222223566777766666555432 25566777777777
Q ss_pred hcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHH
Q 005642 152 KCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLF 225 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 225 (686)
...++++|++.|..... .|...|..+.-.-++.|+++.....-.+..+ ..-..|..++.++.-.|++..|..++
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888877663 3445566655556677777777666655544 33557888888888888888888888
Q ss_pred HHHHHCC-CCcCHHHHHHHHHH------HHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 226 HKMRRNG-VLEDASTLASVLSA------CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 226 ~~m~~~g-~~p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
++..+.. -.|+...+...... ....|.++.|.+.+..-... +......-..-.+.+.+.+++++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 8877654 24565555443332 23556666666665543332 1212223345566777888888888888877
Q ss_pred ccC--Cchh-HHHHHHHHHhCCCHHHHH-HHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHH
Q 005642 299 KVY--DTIL-LNTMITVYSSCGRIEDAK-HIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 371 (686)
Q Consensus 299 ~~~--~~~~-~~~li~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 371 (686)
..+ |... |-.+..++.+-.+.-++. .+|....+. ....-..=+.......-.+..-.++..+.+.|+++-...
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 743 3333 334444443222333333 444444331 111111111111112222333445555666665544333
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCC----------CCCCHH--H
Q 005642 372 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG----------VKPTII--T 439 (686)
Q Consensus 372 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~----------~~p~~~--~ 439 (686)
+.++-. .....+ +.++++ ..+...+...| -+|... +
T Consensus 326 l~SLyk---~p~k~~----~le~Lv-------------------------t~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 326 LRSLYK---DPEKVA----FLEKLV-------------------------TSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred hHHHHh---chhHhH----HHHHHH-------------------------HHHHhhcccccCCCcccccccCCchHHHHH
Confidence 333221 111111 222111 11111111111 134443 4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCV 516 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~ 516 (686)
+--++..+-+.|+++.|..+++... +..|+ ++.|..-.+++.+.|++++|..++++.. -.||...-..-+.-..
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4456677888999999999999887 55675 6778888899999999999999999884 3455544445556667
Q ss_pred hcCChhHHHHHHHHHHccCCC-------CchhHHHH--HHHHhhcCCcchHHHHHH
Q 005642 517 AHGDKGLGRKVAERMIELDPE-------NACAYIQL--SSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~-------~~~~~~~l--~~~~~~~g~~~~a~~~~~ 563 (686)
++++.++|.++.......+-+ -...|..+ +.+|.++|+|..|.+=+.
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 888999998887776653321 11234443 567888888877775433
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=8.8e-11 Score=80.62 Aligned_cols=50 Identities=30% Similarity=0.519 Sum_probs=46.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 005642 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249 (686)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 249 (686)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999999999999999999999999999864
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.5e-07 Score=85.41 Aligned_cols=395 Identities=12% Similarity=0.037 Sum_probs=226.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhccCCCCh-hhHHHHHHHHHc-cCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 005642 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD-FCLSALISGYAN-CGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 216 (686)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 216 (686)
+...-...+.+|-..++-+.|...+.+.++.-. ...+.|+.-+-+ .++-.++.--+......-+..... |.+..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i~~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-IEALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH-HHHHHHHh
Confidence 444555667777777888888888877775322 223333333322 222222211111111111111111 11111110
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH--ccCChhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhHHHH
Q 005642 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACS--SLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACK 293 (686)
Q Consensus 217 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~ 293 (686)
...+...=..|-...++|+..+...-+.+++ ..++-..+...+-.+.... ++.|+.....+..++...|+.++|..
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 0111111112222224444444444444433 2344444444433333322 56677777888888888888888888
Q ss_pred HHHhcccCCchhHH---HHHHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 005642 294 LFSELKVYDTILLN---TMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367 (686)
Q Consensus 294 ~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 367 (686)
.|++....|+.+.. .....+.+.|+.+.-..+...+-..+ ...|..-++.+....+++.|+.+-++.++.. +.
T Consensus 254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r 332 (564)
T KOG1174|consen 254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PR 332 (564)
T ss_pred HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cc
Confidence 88877644443322 23344566777776666655554332 2344444555556677788887777776642 22
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHH-
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAIL- 444 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll- 444 (686)
+...|..-...+...++.++|.-.|+.++... +.+...|..|+..|...|. +|..+-....+. ++.+..+...+.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGT 410 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcc
Confidence 33445444556667788888887787766543 3567778888888877776 333333222111 112334443332
Q ss_pred HHHh-ccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 005642 445 SACD-HCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDK 521 (686)
Q Consensus 445 ~~~~-~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~ 521 (686)
..|. ...--++|.+++++.. .+.|+ ......+...+...|..++++.++++. ...||....+.|.+.++..+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence 2222 2234578888888766 56675 667788888899999999999999887 5778888899999999999999
Q ss_pred hHHHHHHHHHHccCCCCchh
Q 005642 522 GLGRKVAERMIELDPENACA 541 (686)
Q Consensus 522 ~~A~~~~~~~~~~~p~~~~~ 541 (686)
++|...|..++.++|++..+
T Consensus 488 Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHHhcCccchHH
Confidence 99999999999999977553
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1.1e-10 Score=80.07 Aligned_cols=50 Identities=26% Similarity=0.499 Sum_probs=43.6
Q ss_pred CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005642 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381 (686)
Q Consensus 332 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 381 (686)
||+++||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888889999999999999999999999988888888888888888864
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=8.6e-07 Score=89.04 Aligned_cols=440 Identities=10% Similarity=0.058 Sum_probs=208.8
Q ss_pred HHHhcCCcHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHH
Q 005642 50 MYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQ 126 (686)
Q Consensus 50 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~ 126 (686)
.+...|++++|.+..+++.. .+..++..-+-++.+.+++++|+.+.+.-........-.+=++||.-..+..+++..
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHH
Confidence 34455566666666555543 244455555555666666666664444332211111111344555443445555555
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHH-HHccCCHHHHHHHHhhcCCCChhh
Q 005642 127 IHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG-YANCGKMNDARRVFDRTTDTSSVM 204 (686)
Q Consensus 127 i~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~ 204 (686)
.+. |..++ ..+...-...+.+.|++++|..+++.+.+.+...+...+.+ +...+---.+. +.+..+.....+
T Consensus 101 ~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 101 TLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDS 174 (652)
T ss_pred HHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcch
Confidence 544 33222 22444445556666777777777776655444333333322 11111111111 233333221222
Q ss_pred H---HHHHHHHHhcCChhHHHHHHHHHHHC-------CCCcCH------H-HHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 005642 205 W---NSMISGYISNNEDTEALLLFHKMRRN-------GVLEDA------S-TLASVLSACSSLGFLEHGKQVHGHACKVG 267 (686)
Q Consensus 205 ~---~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~------~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 267 (686)
| ......++..|++.+|+++++...+. +-.-+. . .-..+.-.+-..|+.++|..++...++..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 2 22344556677777777777766221 100000 0 11223333446677777777777777765
Q ss_pred CCchHH---HHHHHHHHHHhcCChh-HHHHHHHhcccCC-------------chhHHHHHHHHHhCCCHHHHHHHHhhCC
Q 005642 268 VIDDVI---VASALLDTYSKRGMPS-DACKLFSELKVYD-------------TILLNTMITVYSSCGRIEDAKHIFRTMP 330 (686)
Q Consensus 268 ~~~~~~---~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~~ 330 (686)
....+. .-|.|+.+-....-++ .+...++...... ...+....-...-.+..+.+.++....+
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 332211 1233332221111111 1222222221110 0111111122223455566666666666
Q ss_pred CCCc-hhHHHHHHHHH--hCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH--------HHHHhC
Q 005642 331 NKSL-ISWNSMIVGLS--QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA--------RVTIIG 399 (686)
Q Consensus 331 ~~~~-~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~ 399 (686)
...+ ..+..++.... +...+.++.+++....+....-.....-..+......|+++.|.+++. .+.+.+
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~ 414 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK 414 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc
Confidence 5432 33444443332 223466677776666554211123344455555677888888888888 444444
Q ss_pred CCcchhHHHHHHHHHHhchh--HHHHHHHHHHHC--CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 005642 400 LDSDQIISTSLVDFYCKCGY--DALALFNEMRNT--GVKPTI----ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP 471 (686)
Q Consensus 400 ~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~--~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 471 (686)
..|. +-.+++..|.+.+. .|..++++.... .-.+.. .++.-+...-.+.|+.++|..+++++.+ -.++
T Consensus 415 ~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~ 490 (652)
T KOG2376|consen 415 HLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPN 490 (652)
T ss_pred cChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCc
Confidence 3333 34445555555554 333333332210 001111 2333333344566888888888888873 2345
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMP 500 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (686)
|.++...++.+|++. +++.|..+-+.+.
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 778888888887765 5777777777664
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=6.5e-08 Score=99.36 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhc----C-CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQY----H-IDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP--------FEA 503 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p 503 (686)
-+++.|...|.+.|++++|.+++++++... + ..+ ....++.|...|.+.+.+++|.++|.+.. ..|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 578899999999999999999999986432 1 223 35678889999999999999999988762 334
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 504 D-VGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 504 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
+ ..+|..|...|.+.|+++.|+++.+....
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4 45699999999999999999999888775
No 73
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=3.8e-06 Score=87.28 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHccCCCC------chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 520 DKGLGRKVAERMIELDPEN------ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
|..+.+.-.+.+++ +|.. ...|..++..+....+|..|-+.+++|..+-
T Consensus 1306 D~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 45555555666665 3432 2457788899999999999999999998753
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=1.9e-08 Score=96.15 Aligned_cols=192 Identities=13% Similarity=0.042 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555566666666666666666665532 2234455555556666666666666666666553 22344555556666
Q ss_pred HhcCChhHHHHHHHhcccC-----CchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHH
Q 005642 283 SKRGMPSDACKLFSELKVY-----DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 354 (686)
...|++++|...|++.... ....+..+..++...|++++|...+++... .+...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655421 123444455555566666666666655543 23456666777777777888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
..+++..+. .+.+...+..+...+...|+.+.|..+.+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777665 334455555666666677777777776665543
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=1.5e-06 Score=81.69 Aligned_cols=439 Identities=13% Similarity=0.082 Sum_probs=257.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 005642 79 IEGFMKLGHKEKSLQLFNVMPQK---NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155 (686)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 155 (686)
+.-+....++..|+.+++--... ........|..|.- ..+++++|..++..+... -.++...+-.|...+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHH
Confidence 44456677888888887765431 12234444444433 358899999998887774 36666777777777777899
Q ss_pred hHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 005642 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235 (686)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 235 (686)
+.+|..+-.+.++. ...-..+...-.+.++-++-..+-+.+.... .---+|.+..-..-.+.+|+++|.+.+.. .|
T Consensus 107 Y~eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ 182 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NP 182 (557)
T ss_pred HHHHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Ch
Confidence 99999888776542 2333445555566777666665555544322 22334444444455788999999998774 46
Q ss_pred CHHHHHHHHHH-HHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc--CChhHHHHHHHhcccCCchhHHHHHHH
Q 005642 236 DASTLASVLSA-CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR--GMPSDACKLFSELKVYDTILLNTMITV 312 (686)
Q Consensus 236 ~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~ 312 (686)
+-...+.-+.. |.+..-++.+.+++.--++. ++.++...|.......+. |+.. ..-..++...-... --.+.-
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~a--e~E~k~ladN~~~~-~~f~~~ 258 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTA--EDEKKELADNIDQE-YPFIEY 258 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchh--HHHHHHHHhccccc-chhHHH
Confidence 66666655544 45777777777777766665 444555555544444432 3332 22222221110000 112222
Q ss_pred HHhC-----CCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----
Q 005642 313 YSSC-----GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS---- 383 (686)
Q Consensus 313 ~~~~-----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---- 383 (686)
+++. ..-+.|++++-.+.+.=+.+--.++--|.+.++..+|..+.+++.. ..|-......+.. ...|
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aalGQe~g 334 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AALGQETG 334 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HHhhhhcC
Confidence 2322 2335566665555544445555666667778888888777666532 2232222222222 2222
Q ss_pred ---ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHH
Q 005642 384 ---SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTI-ITFTAILSACDHCGLVKEGQKW 459 (686)
Q Consensus 384 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~ 459 (686)
.+.-|.+.|...-+.+ ..-|. .--.++..++.-..++|+.+.+
T Consensus 335 SreHlKiAqqffqlVG~Sa---------------------------------~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESA---------------------------------LECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred cHHHHHHHHHHHHHhcccc---------------------------------cccccccchHHHHHHHHHHHHHHHHHHH
Confidence 2233333333332222 22121 1233444555556678888888
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 460 FDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPF--EADVGMWSS-ILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
++.+. .+-. .|......+..+++..|.+.+|.++|-.... ..+..+|.+ +.++|.+.+.++.|..++-++- .|
T Consensus 382 lnSi~-sYF~-NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~ 457 (557)
T KOG3785|consen 382 LNSIE-SYFT-NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TP 457 (557)
T ss_pred HHHHH-HHhc-CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--Cc
Confidence 88877 3333 3334445678999999999999999988741 125556554 5567788999999877765443 23
Q ss_pred C-CchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 537 E-NACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 537 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
. .......+++.|.+.+.+=-|.+.|+.+...
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 3 3334556678999999999999999987654
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=2.9e-08 Score=107.09 Aligned_cols=174 Identities=18% Similarity=0.088 Sum_probs=95.8
Q ss_pred CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHH
Q 005642 185 GKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261 (686)
Q Consensus 185 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 261 (686)
+++++|...+++..+ .+..+|..+...+...|++++|+..|++..+.+ +.+...+..+...+...|++++|...++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 335556666655443 234556666666666666666666666666642 2234455555666666666666666666
Q ss_pred HHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cC-CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc---
Q 005642 262 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL--- 334 (686)
Q Consensus 262 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--- 334 (686)
++.+.++. +...+..++..+...|++++|...+++.. .| ++..+..+..++...|+.++|...+.++...++
T Consensus 397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence 66665422 22222223334455666666666666553 12 233455566666666777777776666544322
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
...+.+...|...| ++|...++.+.+
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 23444444555555 356665555543
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1e-08 Score=90.66 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=129.3
Q ss_pred HHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 005642 412 DFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC 488 (686)
Q Consensus 412 ~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 488 (686)
-.|...|+ .|...+++..+.... +..+|..+...|.+.|..+.|.+.|++.. .+.| +.++.|..+..+|..|+
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHHHhCCC
Confidence 33444444 444444444443222 56789999999999999999999999988 4667 68999999999999999
Q ss_pred hHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHH
Q 005642 489 LNEAVNLIEQMPFEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564 (686)
Q Consensus 489 ~~~A~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (686)
+++|...|++....|. ..+|.++.-+..+.|+.+.|...+++.++.+|+.+.....++....+.|++..|..+++.
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 9999999999854443 678999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCC
Q 005642 565 MREKHV 570 (686)
Q Consensus 565 ~~~~~~ 570 (686)
....+.
T Consensus 199 ~~~~~~ 204 (250)
T COG3063 199 YQQRGG 204 (250)
T ss_pred HHhccc
Confidence 886554
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=5e-09 Score=96.84 Aligned_cols=230 Identities=14% Similarity=0.060 Sum_probs=182.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcc--cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC--CCchh-HHHHHHHHHhCCCh
Q 005642 276 SALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLIS-WNSMIVGLSQNGSP 350 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~ 350 (686)
+-+..+|.+.|.+.+|.+.|+... .+-+.+|-.|-++|.+..+.+.|+.++.+-.+ |..+| ..-+...+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 668888999999999998888766 45677888888999999999999999988776 33344 34566777788999
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHH
Q 005642 351 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRN 430 (686)
Q Consensus 351 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~ 430 (686)
++|.++|+...+. .+.+......+...|.-.++.+.|..+|+++.+.|+.
T Consensus 307 ~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~----------------------------- 356 (478)
T KOG1129|consen 307 EDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ----------------------------- 356 (478)
T ss_pred HHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-----------------------------
Confidence 9999999998875 3455666667777777788888888888888777643
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHH
Q 005642 431 TGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE--IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVG 506 (686)
Q Consensus 431 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~ 506 (686)
++..|+.+.-+|.-.+++|-++..|++... .-..|+ .++|-.+.......|++.-|.+.|+-.- ..| ...
T Consensus 357 -----speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 357 -----SPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred -----ChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 677888888888889999999999998873 333353 6788888888888999999999998763 344 467
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
.++.|.-.-.+.|++++|..++..+....|+-...
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 78888888889999999999999999988874433
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=3.4e-08 Score=106.52 Aligned_cols=207 Identities=12% Similarity=-0.045 Sum_probs=118.5
Q ss_pred HHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 319 IEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 319 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
+++|...+++..+. +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++.+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555555554432 33455555566666666666666666666542 222344555555566666666666666655
Q ss_pred HHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-Chh
Q 005642 396 TIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIE 474 (686)
Q Consensus 396 ~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~ 474 (686)
.+... . +...+..++..+...|++++|...+++..+. .+| ++.
T Consensus 399 l~l~P---------------------------------~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~ 442 (553)
T PRK12370 399 LKLDP---------------------------------T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPI 442 (553)
T ss_pred HhcCC---------------------------------C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHH
Confidence 54321 1 1112222333445567788888888877632 234 455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHc---cCCCCchhHHHHHHHH
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQMP-FEADV-GMWSSILRGCVAHGDKGLGRKVAERMIE---LDPENACAYIQLSSIF 549 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~ 549 (686)
.+..+..++...|++++|...++++. ..|+. ..++.+...+...| +.|...++++++ ..|.++. .+..+|
T Consensus 443 ~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~ 517 (553)
T PRK12370 443 LLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPG---LLPLVL 517 (553)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHH
Confidence 56777777888888888888887763 44443 33444555556666 366666666655 3343322 356666
Q ss_pred hhcCCcchHHHHHHHHHhc
Q 005642 550 ATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~ 568 (686)
.-.|+-+.+..+ +++.+.
T Consensus 518 ~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 518 VAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHhhhHHHHHH-HHhhcc
Confidence 677777777766 666543
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=2e-06 Score=89.27 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVN--LIEQM-PFEA-DVGMWSS 510 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ 510 (686)
....|......+...|..++|.+.|.... -+.| .+....++..++.+.|+..-|.. ++..+ ++.| +...|..
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 44556666667778899999999999877 5778 57889999999999998888877 77766 5677 5888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
+...+.+.|+.+.|...|..+.++++.+|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999998887653
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.02 E-value=2.7e-06 Score=87.19 Aligned_cols=217 Identities=17% Similarity=0.242 Sum_probs=142.0
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 005642 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 390 (686)
Q Consensus 311 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 390 (686)
.-+...|+++.|...|-+... .-..+.+.....+|.+|+.+++.++..+. -..-|..+...|+..|+++.|.+
T Consensus 714 ~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHH
Confidence 344455666666655544321 12234455667788888888887776532 23346677778888888888888
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 005642 391 VFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468 (686)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 468 (686)
+|.+. ..++-.|++|.+.|+ +|.++-.+. .|.......|.+-..-.-.+|++.+|.+++-.+-
T Consensus 787 lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~---- 851 (1636)
T KOG3616|consen 787 LFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---- 851 (1636)
T ss_pred HHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----
Confidence 87643 234556788888887 666665543 2444445566666666778888888888775432
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
.|+. -+.+|-+.|..++.+++.++..-..-..+...+..-+...|+++.|+..|-++-+ |....++
T Consensus 852 -~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnm 917 (1636)
T KOG3616|consen 852 -EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNM 917 (1636)
T ss_pred -CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHH
Confidence 2443 4567888888888888888763222245566677778888898888877765443 5556677
Q ss_pred HhhcCCcchHHHHHH
Q 005642 549 FATSGEWEKSSLIRD 563 (686)
Q Consensus 549 ~~~~g~~~~a~~~~~ 563 (686)
|...+.|++|-++.+
T Consensus 918 yk~s~lw~dayriak 932 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhhHHHHHHHHh
Confidence 777778877776654
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.7e-06 Score=80.12 Aligned_cols=386 Identities=12% Similarity=0.011 Sum_probs=211.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhH-HHHHHHHHhcC-ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 005642 171 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW-NSMISGYISNN-EDTEALLLFHKMRRNGVLEDASTLASVLSACS 248 (686)
Q Consensus 171 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 248 (686)
...-...+..|...++-+.|...+...++.-...- |.|+..+-+.| +..++.--+.+.+.. .+.-......++..-.
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre-cp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE-CPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh-cchHHHHHHHHHHHhh
Confidence 33445667788888999999999988887543333 33333333332 222333333333222 1111111111111100
Q ss_pred ccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH--HhcCChhHHHHHHHhcc-----cCCchhHHHHHHHHHhCCCHHH
Q 005642 249 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY--SKRGMPSDACKLFSELK-----VYDTILLNTMITVYSSCGRIED 321 (686)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~ 321 (686)
+ ..+.+. ..|-....+|.......-+.++ +-.++...|...+-.+. +.++.....+.+.+...|+.++
T Consensus 176 ~--g~e~~S---~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~ 250 (564)
T KOG1174|consen 176 N--GNEINS---LVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQ 250 (564)
T ss_pred c--chhhhh---hhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchH
Confidence 0 011111 1111222233332222233333 33344444444433222 4577788899999999999999
Q ss_pred HHHHHhhCCCCCchhHHHH---HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 322 AKHIFRTMPNKSLISWNSM---IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 322 A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
|...|++..--|+.+...| ...+.+.|+++....+...+... ..-+...|..-.......++++.|+.+-++.++.
T Consensus 251 a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 251 AEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 9999998876655443332 33456788888887777776543 1222333333334445667788888877777664
Q ss_pred CCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHH
Q 005642 399 GLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY 476 (686)
Q Consensus 399 ~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 476 (686)
+.. +...+-.-...+...++ +|.--|+..+... +-+...|..|+..|...|++.+|.-.-+...+. +..+..+.
T Consensus 330 ~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~L 405 (564)
T KOG1174|consen 330 EPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSL 405 (564)
T ss_pred Ccc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhh
Confidence 321 12222111222233333 5666666655332 124567777777777777777777766665532 22344554
Q ss_pred HHHH-HHHHh-cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 477 SCMV-DLFAR-AGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 477 ~~l~-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
..++ ..+.- ...-++|..++++. ...|+ ....+.+...|...|..+.++.++++.+...|+. ..+..|+.++...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ 484 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh
Confidence 4442 22222 22346677777765 46665 4445666677777777777777777777777744 4577777777777
Q ss_pred CCcchHHHHHHHHHhc
Q 005642 553 GEWEKSSLIRDIMREK 568 (686)
Q Consensus 553 g~~~~a~~~~~~~~~~ 568 (686)
..+++|.+.|......
T Consensus 485 Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQ 500 (564)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 7777777777766553
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.02 E-value=1.4e-06 Score=92.61 Aligned_cols=538 Identities=13% Similarity=0.035 Sum_probs=309.3
Q ss_pred hhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005642 23 VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99 (686)
Q Consensus 23 ~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 99 (686)
.+...|..+....+.++-.++|..|...|+.--+...|.+.|+..-+ .+..++-.....|++..+++.|.++.-...
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34445555555556666666899999999988899999999998875 366789999999999999999999844443
Q ss_pred CC---CcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCCh-hhHH
Q 005642 100 QK---NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD-FCLS 175 (686)
Q Consensus 100 ~~---~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 175 (686)
+. ..-.++.+-++......++...+..-++...+.. +.|...|..++.+|.++|.+..|.++|++....++ .+|.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 31 1122333334443334456666766677766654 33788999999999999999999999988875332 3344
Q ss_pred HHH--HHHHccCCHHHHHHHHhhcCCC----------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-------CCCCcC
Q 005642 176 ALI--SGYANCGKMNDARRVFDRTTDT----------SSVMWNSMISGYISNNEDTEALLLFHKMRR-------NGVLED 236 (686)
Q Consensus 176 ~li--~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~ 236 (686)
..- ..-+..|.+.+|...+..+... -..++-.+...+.-.|-...|.+++++-++ .....+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 332 3356789999998888765431 122333333333334444444444443322 111112
Q ss_pred HHHHHHHHHHH-----------------------HccCCh---h---hHHHHHHHHHHcCCCchHHHHHHHHHHHHh---
Q 005642 237 ASTLASVLSAC-----------------------SSLGFL---E---HGKQVHGHACKVGVIDDVIVASALLDTYSK--- 284 (686)
Q Consensus 237 ~~~~~~ll~~~-----------------------~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--- 284 (686)
...|..+-.+| ...+.. + .+.+.+-.-++ +..+...|..|+..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHH
Confidence 22222222221 111111 1 00000000000 11223344444444433
Q ss_pred -cCC----hhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhH
Q 005642 285 -RGM----PSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEA 353 (686)
Q Consensus 285 -~g~----~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 353 (686)
.|. ...|...+.... ..+...|+.|.-. ...|.+.-|...|-+... .+..+|.++...+.++.+++.|
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 221 224555555544 3355667766655 555677777666655432 3556788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH----hCCCcchhHHHHHHHHHHhchh----------
Q 005642 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI----IGLDSDQIISTSLVDFYCKCGY---------- 419 (686)
Q Consensus 354 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~---------- 419 (686)
...|...+.. .+.+...+..........|+.-+...+|..--+ .|--+...-|.+........|+
T Consensus 870 ~~af~~~qSL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 870 EPAFSSVQSL-DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hHHHHhhhhc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 8888877663 222334444333334455666666666664221 2223444444333333334433
Q ss_pred --HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH----HHHHHHHhcCChHHHH
Q 005642 420 --DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS----CMVDLFARAGCLNEAV 493 (686)
Q Consensus 420 --~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~ 493 (686)
.|.-.+..... +.+-+...|.......-+.+.+..|.+...+...-...+-+...|+ ...+.+...|.++.|.
T Consensus 949 i~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~ 1027 (1238)
T KOG1127|consen 949 ISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAK 1027 (1238)
T ss_pred hhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHh
Confidence 22222333332 2333557777777777788888888887777642222233444444 4556677788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch---hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 494 NLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC---AYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 494 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..+.......+...-..-+.. --.++++++...|++++.+..++.. ....++......+.-+.|...+=+...
T Consensus 1028 ~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1028 KASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 777766544444333333333 3367899999999999986554433 334444555567777788776554443
No 84
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3.3e-05 Score=82.39 Aligned_cols=272 Identities=11% Similarity=0.079 Sum_probs=156.7
Q ss_pred cCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCC-----------CC-Ch----hhH------
Q 005642 18 HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-----------RR-NC----FSW------ 75 (686)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~-~~----~~~------ 75 (686)
.|.+....++|+.++..|. .+.+ ..-.+...-..+|+.+-..+++.+=. .+ |. .+|
T Consensus 407 ~Gq~sPLLqYFg~LLdqGk-LNk~-ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp 484 (1666)
T KOG0985|consen 407 PGQPSPLLQYFGTLLDQGK-LNKY-ETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVP 484 (1666)
T ss_pred CCCCCcHHHHHHHHHhccc-ccHH-HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCc
Confidence 4566677778888877773 2332 33444444445566555555554322 11 11 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 005642 76 NAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 154 (686)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g 154 (686)
+..+.+|+..|.+++++-...+.-. || |-.+|+...+. .++.+.+....+..... ...-.+.+.+.+...+
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r~---sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N 556 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKRS---SPDQALQFAMMLVQDEE--PLADIEQIVDLFMELN 556 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHcc---ChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHH
Confidence 2344455555555555554444322 43 55667777665 56677777766666432 3334555666666655
Q ss_pred ChHHHHHHHhccCC---------------------CC------------hhhHHHHHHHHHccCCHHHHHHHHhhcCCC-
Q 005642 155 DFNSANQVLNMMKE---------------------PD------------DFCLSALISGYANCGKMNDARRVFDRTTDT- 200 (686)
Q Consensus 155 ~~~~A~~~~~~~~~---------------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 200 (686)
....+...+-.+.+ |+ ..-+..+.+.|.+.|-...|++.+..+..-
T Consensus 557 ~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIK 636 (1666)
T KOG0985|consen 557 LIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIK 636 (1666)
T ss_pred hhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHH
Confidence 55555554433332 11 112445666677888888888777665431
Q ss_pred ChhhHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc---------
Q 005642 201 SSVMWNS-----MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV--------- 266 (686)
Q Consensus 201 ~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------- 266 (686)
...+.+. -+..|.-.-.++++++.++.|...++..|..+...+..-|...=-.+...++|+.....
T Consensus 637 R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgS 716 (1666)
T KOG0985|consen 637 RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGS 716 (1666)
T ss_pred HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHH
Confidence 1111111 12344455567888888888888888888877777777776665566666777665432
Q ss_pred --CCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 267 --GVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 267 --g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
++.-|+.+.-..|.+-++.|++.+.+++.++-.
T Consensus 717 ivn~seDpevh~KYIqAA~kt~QikEvERicresn 751 (1666)
T KOG0985|consen 717 IVNFSEDPEVHFKYIQAACKTGQIKEVERICRESN 751 (1666)
T ss_pred HhccccCchHHHHHHHHHHhhccHHHHHHHHhccc
Confidence 244566666667888888888888887776543
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=2.1e-07 Score=96.99 Aligned_cols=282 Identities=15% Similarity=0.151 Sum_probs=162.0
Q ss_pred HHHHHHhcCChhHHHHHHHhccc--CC-chhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc--hh-HHHHHHHHHhC----
Q 005642 278 LLDTYSKRGMPSDACKLFSELKV--YD-TILLNTMITVYSSCGRIEDAKHIFRTMPNKSL--IS-WNSMIVGLSQN---- 347 (686)
Q Consensus 278 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~-~~~li~~~~~~---- 347 (686)
....+...|++++|++.+++-.. .| ..........+.+.|+.++|..++..+.+.|+ .. |..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34566778888888888876552 23 33455667778888888888888888776433 33 33344443222
Q ss_pred -CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH-HHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHH
Q 005642 348 -GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE-LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALA 423 (686)
Q Consensus 348 -g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~ 423 (686)
.+.+....+|+++... -|.......+.-.+.....+. .+..++..+...|+++ +++.|-..|..... -...
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 2455666777777654 244444433332333322332 3444445556666543 44445445553322 2222
Q ss_pred HHHHHH----HCC----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhc
Q 005642 424 LFNEMR----NTG----------VKPTI--ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARA 486 (686)
Q Consensus 424 ~~~~m~----~~~----------~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 486 (686)
++.... ..+ -+|.. .++.-+...|...|++++|+++.++.+ ...|+ ++.|..-...+-+.
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHC
Confidence 333322 211 12233 234455566777778888888877776 23453 67777777777788
Q ss_pred CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC--CCC-------chhHHHHHHHHhhcCCc
Q 005642 487 GCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELD--PEN-------ACAYIQLSSIFATSGEW 555 (686)
Q Consensus 487 g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~ 555 (686)
|++++|.+.++... ..+ |...-+-.+..+.+.|++++|...+......+ |.. .......+.+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88888877777774 333 44444445556677777887777776665433 211 11123456677777777
Q ss_pred chHHHHHHHHHh
Q 005642 556 EKSSLIRDIMRE 567 (686)
Q Consensus 556 ~~a~~~~~~~~~ 567 (686)
..|.+.+..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=1.5e-07 Score=92.81 Aligned_cols=212 Identities=12% Similarity=-0.005 Sum_probs=130.4
Q ss_pred CCCHHHHHHHHhhCCCC---C----chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 005642 316 CGRIEDAKHIFRTMPNK---S----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388 (686)
Q Consensus 316 ~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 388 (686)
.+..+.+..-+.++... + ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34455555555544421 1 2346666666667777777777776666642 22345666666666677777766
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 005642 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468 (686)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 468 (686)
...|+..++.. | -+..++..+...+...|++++|.+.|+...+
T Consensus 118 ~~~~~~Al~l~--P--------------------------------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--- 160 (296)
T PRK11189 118 YEAFDSVLELD--P--------------------------------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--- 160 (296)
T ss_pred HHHHHHHHHhC--C--------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 66666655432 1 1456777777788888999999999998873
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-------ccCCCCc
Q 005642 469 IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMI-------ELDPENA 539 (686)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~p~~~ 539 (686)
..|+..........+...+++++|...|++.. ..|+. |.. .......|+...+ ..++.+. ++.|+..
T Consensus 161 ~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 161 DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLC 236 (296)
T ss_pred hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHH
Confidence 44543222222333456778999999986642 23332 221 2222334555443 2333333 3455666
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+|..++.++...|++++|...+++..+..
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 789999999999999999999999887644
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.7e-06 Score=86.21 Aligned_cols=391 Identities=13% Similarity=0.086 Sum_probs=218.2
Q ss_pred HHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CC-hhhHHHHHHHHHhcCChhHH
Q 005642 148 NLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD--TS-SVMWNSMISGYISNNEDTEA 221 (686)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 221 (686)
++.+..|+++.|...|.+... +|.+.|+.-..+|.+.|++++|.+=-.+-.+ |+ ...|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 445566888888888876652 5566677777777777777777765554433 32 34677777777777777777
Q ss_pred HHHHHHHHHCCCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH-----HHHHhcCChhHHHHHH
Q 005642 222 LLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL-----DTYSKRGMPSDACKLF 295 (686)
Q Consensus 222 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~ 295 (686)
+.-|.+-++. .| |...+..+..+. ..+.+. +. .-.++..+..+. +.+...-.+-.-++.+
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 7777776664 33 333444444444 111110 10 111222222221 1111111111111111
Q ss_pred HhcccCCchh---HHHHHHHHHhCCCHHHH-HHHHhh-----CCCC------------Cc----------hhHHHHHHHH
Q 005642 296 SELKVYDTIL---LNTMITVYSSCGRIEDA-KHIFRT-----MPNK------------SL----------ISWNSMIVGL 344 (686)
Q Consensus 296 ~~~~~~~~~~---~~~li~~~~~~g~~~~A-~~~~~~-----~~~~------------~~----------~~~~~li~~~ 344 (686)
..-. .+... ...++.+.......+.- ...-.. +..| |. .-...+..+.
T Consensus 156 ~~~p-~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 156 QKNP-TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hcCc-HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 1111 00000 01111111111000000 000000 0001 00 1244566677
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh-----
Q 005642 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----- 419 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----- 419 (686)
.+..+++.|++-+....+.. -+..-++....++...|.+..+...-...++.|- -...-|+.+...+.+.|.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhH
Confidence 77777888888887777653 3444445666667777777777776666666552 222333434444444333
Q ss_pred ----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 005642 420 ----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI-EHYSCMVDLFARAGCLNEAVN 494 (686)
Q Consensus 420 ----~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 494 (686)
.++..|.+.......|+.. .+....+++....+... -+.|.. .-...-+..+.+.|++..|+.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 5555555544333332221 12233344444433332 334432 222233667788999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 495 LIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 495 ~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.|.++ ...| |...|....-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|+.|.+.+.+..+.
T Consensus 380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988 3456 67779999999999999999999999999999999999999999999999999999999966653
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.91 E-value=1.6e-05 Score=83.12 Aligned_cols=249 Identities=13% Similarity=0.066 Sum_probs=142.1
Q ss_pred HHHHHhcCCcHHHHHHhccCCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHH----hcCh
Q 005642 48 LQMYMRCGNPTDALLLFDEMPR--RNC-FSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFA----KADL 118 (686)
Q Consensus 48 ~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ll~~~~----~~~~ 118 (686)
.+.+...|++++|+..++.-.. .|. .........+.+.|+.++|..+|..+.+ |+...|-..+..|. ....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4556788999999999987664 243 4556678888999999999999999976 76666665555554 2112
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH-HHHHHHhccCCCCh-hhHHHHHHHHHccCCHHHHHHHHhh
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN-SANQVLNMMKEPDD-FCLSALISGYANCGKMNDARRVFDR 196 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 196 (686)
.+.+....+++.+...- |.......+.-.+..-..+. .+...+..+....+ .+|+.+-..|....+.+-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 34566667777665543 22222222222222211222 22223333333332 4555555555544444444444432
Q ss_pred cC------------------CCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHccCChhh
Q 005642 197 TT------------------DTSS--VMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEH 255 (686)
Q Consensus 197 ~~------------------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~ 255 (686)
.. .|.. +++..+...|-..|++++|++++++.++. .|+ ...|..-.+.+-+.|++.+
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 11 0111 23345555666666777777777666663 343 4456666666666677777
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC
Q 005642 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301 (686)
Q Consensus 256 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 301 (686)
|.+.++.....+. -|...-+..+..+.++|++++|.+++.....+
T Consensus 247 Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 247 AAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 7666666666542 25555555566666666666666666655533
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.5e-07 Score=91.23 Aligned_cols=219 Identities=11% Similarity=0.076 Sum_probs=131.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCh
Q 005642 307 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA-SVISACANISSL 385 (686)
Q Consensus 307 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~ 385 (686)
..+.+++...|+.+.+..-...-..|.......+...+...++-+.++.-+++.......++..++. .....+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3444555555555544444434344444444444433333344445555444443333232222222 223344566777
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005642 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465 (686)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (686)
++|.+++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 119 ~~AL~~l~~~---------------------------------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~- 158 (290)
T PF04733_consen 119 EEALKLLHKG---------------------------------------GSLELLALAVQILLKMNRPDLAEKELKNMQ- 158 (290)
T ss_dssp HHHHCCCTTT---------------------------------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHcc---------------------------------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 7666655421 144555667778888899999999999887
Q ss_pred hcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 466 QYHIDPEIE---HYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 466 ~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.+..|.. ...+.+....-.+.+.+|..+|+++. ..+++.+.+.+..+....|++++|...++++++.+|.++.
T Consensus 159 --~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 159 --QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp --CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred --hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 3344422 12223333333346899999999983 4567788888888889999999999999999999999988
Q ss_pred hHHHHHHHHhhcCCc-chHHHHHHHHHh
Q 005642 541 AYIQLSSIFATSGEW-EKSSLIRDIMRE 567 (686)
Q Consensus 541 ~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 567 (686)
+..+++-+....|+. +.+.+++.+++.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888888888888888 556678887776
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.6e-07 Score=94.13 Aligned_cols=220 Identities=15% Similarity=0.073 Sum_probs=143.0
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HH
Q 005642 344 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DA 421 (686)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A 421 (686)
+.+.|+..+|.-.|+..+... +-+...|..|.......++-..|+..+.+..+.. +.|.....+|.-.|...|. +|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 334444444444444444331 1223344444444444444444444444444432 3344445555555555554 55
Q ss_pred HHHHHHHHHCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005642 422 LALFNEMRNTGVK--------PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAV 493 (686)
Q Consensus 422 ~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 493 (686)
+..+++-....++ ++...-.. ..+..........++|-++....+..+|+++...|.-.|.-.|.+++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 5555554433211 00000000 1222333445566777777756666688999999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 494 NLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 494 ~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.|+.+ ..+| |...||.|...+....+.++|+..|.+++++.|....+...|+-.|...|.|++|.+.+=....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999988 5777 5677999999999999999999999999999999999999999999999999999998766554
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.87 E-value=7.2e-07 Score=79.22 Aligned_cols=193 Identities=11% Similarity=0.010 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
.+...|..+|.+.|++..|..-+++.++.+ +-+..++..+...|.+.|+.+.|.+.|+..++.. +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 356778889999999999999999998852 3345688888889999999999999999999975 44677889999999
Q ss_pred HhcCChhHHHHHHHhcc-cC----CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHH
Q 005642 283 SKRGMPSDACKLFSELK-VY----DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 354 (686)
|..|++++|...|++.. .| -..+|..+.-+..+.|+.+.|...|++..+.| +.+.-.+.......|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999876 33 35588888889999999999999999887643 356777888888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
..++.....+. ++..+.-..|..--..|+.+.+.+.=..+.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99988887765 88888888888888888888777766655543
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1e-05 Score=74.50 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=155.1
Q ss_pred HHHhcCChHHHHHHHhccCC-CChhhHHHHHHH--HHccCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChhHHHHH
Q 005642 149 LYGKCGDFNSANQVLNMMKE-PDDFCLSALISG--YANCGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLL 224 (686)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 224 (686)
.+.+.+.+.+|+++...|.+ ++...-..-+.+ .-..+++..+..+.++.+. .+..+.+.......+.|++++|++-
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 34566888899999888876 332222222322 3467889999999998884 6667777777777899999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHH----HHHHHHHHhcCCh-hHHHHHHHhcc
Q 005642 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA----SALLDTYSKRGMP-SDACKLFSELK 299 (686)
Q Consensus 225 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~g~~-~~A~~~~~~~~ 299 (686)
|+...+-+--.....|+..+ ++.+.++.+.|.+...++++.|+...+..- +..+++-. .|+. ..+..-
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt~~lh~Sa----- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNTLVLHQSA----- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccchHHHHHHH-----
Confidence 99988754333445665544 455778999999999999998864322211 11111000 0110 000000
Q ss_pred cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC-----CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 005642 300 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 374 (686)
Q Consensus 300 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 374 (686)
-+..+|.-...+.+.++.+.|.+.+-.|+.+ |++|...+.-. -..+++.+..+-+.-+...+ +....||..
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 1224455556678889999999999999863 77777665433 22456666666666666653 345679999
Q ss_pred HHHHHHccCChHHHHHHHHH
Q 005642 375 VISACANISSLELGEQVFAR 394 (686)
Q Consensus 375 ll~~~~~~~~~~~a~~~~~~ 394 (686)
++-.||+..-++.|..++.+
T Consensus 316 lLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhh
Confidence 99999999999998888764
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=3.7e-05 Score=79.14 Aligned_cols=199 Identities=17% Similarity=0.152 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcc--CCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChh------------------
Q 005642 144 SSLVNLYGKCGDFNSANQVLNMM--KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV------------------ 203 (686)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------------ 203 (686)
-+.|..|.+.|.+..|.+....- ...|......+..++.+..-+++|-.+|+++..++-.
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 45677888999888877654221 1244444444445544444444444444444332210
Q ss_pred --------h-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHH
Q 005642 204 --------M-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 274 (686)
Q Consensus 204 --------~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 274 (686)
. -..-...+.+.|+++.|+.-|-+.. .....+.+......+.+|..+++.+.... .-...
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~y 767 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGY 767 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccccc
Confidence 0 0011122223344444444443221 11223334445556666666666555542 12234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCChhh
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIE 352 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 352 (686)
|..+.+.|...|+++.|.++|.+. ..++--|..|.+.|++++|.++-++...| .++.|-+-..-+-.+|++.+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhh
Confidence 455666666666666666666532 23444556666666666666666655544 22344444455555666666
Q ss_pred HHHHHH
Q 005642 353 ALDLFC 358 (686)
Q Consensus 353 A~~~~~ 358 (686)
|.++|-
T Consensus 843 aeqlyi 848 (1636)
T KOG3616|consen 843 AEQLYI 848 (1636)
T ss_pred hhheeE
Confidence 655543
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.85 E-value=2.1e-06 Score=84.77 Aligned_cols=91 Identities=12% Similarity=-0.127 Sum_probs=42.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHc
Q 005642 174 LSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSS 249 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 249 (686)
|..+...+.+.|+.++|...|++..+ .+...|+.+...+...|++++|++.|++..+. .| +..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 33444444455555555555544332 23344555555555555555555555555442 22 23344444444444
Q ss_pred cCChhhHHHHHHHHHHc
Q 005642 250 LGFLEHGKQVHGHACKV 266 (686)
Q Consensus 250 ~~~~~~a~~~~~~~~~~ 266 (686)
.|++++|.+.++...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 45555555555554443
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=5.3e-05 Score=79.13 Aligned_cols=376 Identities=14% Similarity=0.123 Sum_probs=220.3
Q ss_pred hHHHHHH--HHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCcchHHHH
Q 005642 43 IANRLLQ--MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----------KNDFSWNML 109 (686)
Q Consensus 43 ~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~~~~~~~~l 109 (686)
+...+++ +|.--|+.|.|.+-.+-+. +-..|..|.+.+.+..+++-|.-.+-.|.. .|.....+-
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak 805 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK 805 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH
Confidence 4455554 4666788998888776654 345699999999999888888888777753 111111111
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC-CChhhHHHHHHHHHccCCHH
Q 005642 110 ISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYANCGKMN 188 (686)
Q Consensus 110 l~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 188 (686)
..+++- ..+-++.|..++.+..+.. .|=..|-..|.+++|.++-+.=.+ .=..||......+-..++.+
T Consensus 806 vAvLAi-eLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 806 VAVLAI-ELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHH-HHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHH
Confidence 111111 1356888888888877642 233445567889998888755333 12346777777777788888
Q ss_pred HHHHHHhhcCC-----------------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 005642 189 DARRVFDRTTD-----------------------TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 245 (686)
Q Consensus 189 ~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 245 (686)
.|++.|++... +|...|.--...+-..|+.+.|+.+|...+. |.++.+
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 88888875432 2333344444444456778888888776654 456777
Q ss_pred HHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCC--------
Q 005642 246 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG-------- 317 (686)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------- 317 (686)
..+-.|+.++|.++-++ ..|......|.+.|-..|++.+|...|.+.. ++..-|+.|-..+
T Consensus 947 I~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred eEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcCHHHHHHHH
Confidence 77778888888877654 2355555668889999999999998887653 3334444332222
Q ss_pred -------CHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHH--------HHHCCC--CCCHHHHHHHHHHHH
Q 005642 318 -------RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN--------MNKLDL--RMDKFSLASVISACA 380 (686)
Q Consensus 318 -------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~~g~--~p~~~t~~~ll~~~~ 380 (686)
+.-.|-+.|++..- -....+..|-+.|.+.+|+++--+ ++...+ ..|+...+.-..-++
T Consensus 1016 al~s~~~d~v~aArYyEe~g~----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGG----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcch----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 22233333333321 122234456677777777654211 122222 335556666666677
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHH--HCCCCCCHH----HHHHHHHHHhccCCHH
Q 005642 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMR--NTGVKPTII----TFTAILSACDHCGLVK 454 (686)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~--~~~~~p~~~----~~~~ll~~~~~~g~~~ 454 (686)
...++++|..++....+. ...+..+...+-..-+-|.+|. ..+-.|+.. ....+...|.++|.+.
T Consensus 1092 ~~~qyekAV~lL~~ar~~---------~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLAREF---------SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred hHHHHHHHHHHHHHHHHH---------HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 777788877777655432 1122222222222222233332 111233433 4555667788888888
Q ss_pred HHHHHHHHH
Q 005642 455 EGQKWFDAM 463 (686)
Q Consensus 455 ~A~~~~~~~ 463 (686)
.|-+-|.+.
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 777666543
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=0.00011 Score=85.53 Aligned_cols=362 Identities=12% Similarity=0.031 Sum_probs=196.5
Q ss_pred HHHHccCCHHHHHHHHhhcCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhH
Q 005642 179 SGYANCGKMNDARRVFDRTTDTSSV--MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 256 (686)
..+...|++.+|............. ............|+++.+...++.+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 3455566666666555544432211 11112223444566666555555431110111111222233344556777777
Q ss_pred HHHHHHHHHcCC------Cch--HHHHHHHHHHHHhcCChhHHHHHHHhccc--C--Cc----hhHHHHHHHHHhCCCHH
Q 005642 257 KQVHGHACKVGV------IDD--VIVASALLDTYSKRGMPSDACKLFSELKV--Y--DT----ILLNTMITVYSSCGRIE 320 (686)
Q Consensus 257 ~~~~~~~~~~g~------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~li~~~~~~g~~~ 320 (686)
...+....+.-- .+. ......+...+...|++++|...+++... + +. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 777766544210 111 12223334455667777777777766542 1 11 23344555666777777
Q ss_pred HHHHHHhhCCC-------CC--chhHHHHHHHHHhCCChhhHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCC
Q 005642 321 DAKHIFRTMPN-------KS--LISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLR--M-DKFSLASVISACANISS 384 (686)
Q Consensus 321 ~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~~~ 384 (686)
+|...+++... +. ..++..+...+...|++++|...+++.... +.. + ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 77777766542 11 124455566777888888888887776542 211 1 12233344455666788
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005642 385 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464 (686)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (686)
+++|...+.+.....-. .+.......+..+.......|+.++|.+.++...
T Consensus 589 ~~~A~~~~~~al~~~~~-----------------------------~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 589 LDEAEQCARKGLEVLSN-----------------------------YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHHHHHHHhHHhhhc-----------------------------cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887765442100 0100112334445556677888888888887765
Q ss_pred HhcCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 465 WQYHIDPEIEHY-----SCMVDLFARAGCLNEAVNLIEQMPFE--ADV----GMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 465 ~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...........+ ......+...|+.+.|...+...... ... ..+..+..++...|+.++|...++++++
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 640 NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211111111101 11223445578888888888766311 111 1134566667788888899888888877
Q ss_pred cC------CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 534 LD------PENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 534 ~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.. +....++..++.++...|+.++|...+.+..+..
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 32 1223456677888888999999999888887654
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.75 E-value=7.2e-05 Score=80.04 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=52.9
Q ss_pred cCChHHHHHHHHhCC----CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 486 AGCLNEAVNLIEQMP----FEADV-GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 486 ~g~~~~A~~~~~~~~----~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
.++++++.+.|+++- ...+. +....++-.....+..+.|.+.+-+.....|.+......+.-++.-..+-.....
T Consensus 1051 kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssa 1130 (1238)
T KOG1127|consen 1051 KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSA 1130 (1238)
T ss_pred HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHH
Confidence 578888888888872 22333 3345555566677888888888888888887777777777666654444444444
Q ss_pred HHHHHH
Q 005642 561 IRDIMR 566 (686)
Q Consensus 561 ~~~~~~ 566 (686)
+.+++.
T Consensus 1131 ileel~ 1136 (1238)
T KOG1127|consen 1131 ILEELE 1136 (1238)
T ss_pred HHHHHH
Confidence 444443
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.00061 Score=73.20 Aligned_cols=347 Identities=13% Similarity=0.116 Sum_probs=235.0
Q ss_pred hhHHHHHHHHHhhccCccchhhHHHHHHHHhCC--CCCchhhHHHHHHHHHhcCCcHHHHHHhccCC-CC-----ChhhH
Q 005642 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI--LNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RR-----NCFSW 75 (686)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~ 75 (686)
+++-|..+|.- .-..-+++..+.++.++ ..|+. --..-+.+++..+-+.+-.++++++. ++ +...-
T Consensus 951 D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe-~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 951 DPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPE-EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred ChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChH-HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 34455555532 22234677778887775 33443 55677889999999999999999886 33 33345
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 005642 76 NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 155 (686)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 155 (686)
|.|+-...+. +.....+..+++..-|.. .+-..+... +-+++|..++... ..+....+.|+. .-+.
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~iai~~--~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ 1090 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIAIEN--QLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGS 1090 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHHhhh--hHHHHHHHHHHHh-----cccHHHHHHHHH---Hhhh
Confidence 5555544443 455566666666441111 111122222 3466777776542 334444555554 3478
Q ss_pred hHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 005642 156 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235 (686)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 235 (686)
++.|.+.-++..+|. .|+.+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.|++-++++.-.++..-+|
T Consensus 1091 ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1091 LDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred HHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 899999888887765 68889999999999999998775544 46788999999999999999999998888876667
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHh
Q 005642 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 315 (686)
Q Consensus 236 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 315 (686)
...+ .|+-+|++.+++.+.++++ ..|+......+.+-|...|.++.|.-+|. ++..|..|...+..
T Consensus 1167 ~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~ 1232 (1666)
T KOG0985|consen 1167 YIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVY 1232 (1666)
T ss_pred cchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHH
Confidence 6655 4788889988888776665 35777777788888999999999988887 45667777778888
Q ss_pred CCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 316 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 316 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
.|++..|.+.-++. .+..+|..+-.+|...+.+.-| +|...++-....-..-++..|-..|-+++.+.+++..
T Consensus 1233 LgeyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1233 LGEYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 88887777665543 3556777777777766655433 2333333334445566777777777777777776643
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.71 E-value=2.9e-05 Score=72.98 Aligned_cols=180 Identities=9% Similarity=0.036 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHH-HHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SALL 279 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~ 279 (686)
+.-.--+...+...|++.+|+.-|...++. .|+ -.++..-...|...|+...|..-+...++ ++||-..- ---.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhc
Confidence 444556677777778888888888877653 233 23444444566777777777777777777 35554322 2234
Q ss_pred HHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHH
Q 005642 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359 (686)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (686)
..+.+.|.+++|..-|+.+...++. .|...++.+-+..+. ........+..+...|+...|+.....
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~--e~~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ--EHWVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH--HHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 4566777777777777766533221 000111111000000 001122334455567777888887777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 005642 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 399 (686)
Q Consensus 360 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 399 (686)
+.+. .+-|...+..-..+|...|.+..|+.-++.+.+..
T Consensus 181 llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs 219 (504)
T KOG0624|consen 181 LLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS 219 (504)
T ss_pred HHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence 7774 23355555566677777787777777666665544
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.68 E-value=1e-06 Score=85.56 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHH
Q 005642 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDK-GLGRKVA 528 (686)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~-~~A~~~~ 528 (686)
.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++++. ...| ++.++..++......|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 45566666666552 23345555666666666666666666666554 2233 344555555555555555 4455666
Q ss_pred HHHHccCCCCc
Q 005642 529 ERMIELDPENA 539 (686)
Q Consensus 529 ~~~~~~~p~~~ 539 (686)
.++....|+++
T Consensus 260 ~qL~~~~p~h~ 270 (290)
T PF04733_consen 260 SQLKQSNPNHP 270 (290)
T ss_dssp HHCHHHTTTSH
T ss_pred HHHHHhCCCCh
Confidence 66666666543
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.68 E-value=4e-05 Score=72.07 Aligned_cols=315 Identities=16% Similarity=0.112 Sum_probs=170.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHH---HHHHccCCHHHHHHHHhhcCCCChhhH---HHHHHHH
Q 005642 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI---SGYANCGKMNDARRVFDRTTDTSSVMW---NSMISGY 212 (686)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~ 212 (686)
++.-.-.+...+...|++.+|+.-|....+.|...|.++. ..|...|+-.-|+.-|.++.+..+..+ -.-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4445556777777888888888888888877766666554 346666666666666666554222222 2223455
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHH
Q 005642 213 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 292 (686)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 292 (686)
.+.|.++.|..-|+..++. .|+..+- ..+..+.-..+ ........+..+...|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~--~~s~~~~---~eaqskl~~~~----------------e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQH--EPSNGLV---LEAQSKLALIQ----------------EHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhc--CCCcchh---HHHHHHHHhHH----------------HHHHHHHHHHHHhcCCchhhHH
Confidence 6666777777666666654 2322110 01110000000 0111112233344556666666
Q ss_pred HHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 005642 293 KLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP---NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366 (686)
Q Consensus 293 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 366 (686)
.....+. +-|...+..-..+|...|++..|+.-+.... ..+..++..+-..+...|+.+.++...++-.+ +.
T Consensus 176 ~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 176 EMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 6666554 2255556666666777777766665554443 34556666666677777777777777777665 45
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHH---HHHHH
Q 005642 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTII---TFTAI 443 (686)
Q Consensus 367 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~l 443 (686)
||....... -+.+.+..+.++.|.+.- ....|+ ++++-.+...+........ .+..+
T Consensus 254 pdHK~Cf~~------YKklkKv~K~les~e~~i---e~~~~t-----------~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 254 PDHKLCFPF------YKKLKKVVKSLESAEQAI---EEKHWT-----------ECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred cchhhHHHH------HHHHHHHHHHHHHHHHHH---hhhhHH-----------HHHHHHHHHHhcCCcccceeeeeehee
Confidence 665432211 111122222222221110 000111 3333334433332221222 33344
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 444 LSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
-.++...+++.+|++...+.. .+.| |+.++---..+|.-...+++|+.-|+..
T Consensus 314 c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred eecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455666778888888888776 4566 4777777778888888888888888776
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=8.4e-05 Score=76.16 Aligned_cols=85 Identities=8% Similarity=-0.020 Sum_probs=37.4
Q ss_pred HHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHccCC
Q 005642 311 TVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDK--FSLASVISACANISS 384 (686)
Q Consensus 311 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~~~ 384 (686)
..+...|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 344444444444444444432 1233444444555555555555555555443211 1111 122234444455555
Q ss_pred hHHHHHHHHHH
Q 005642 385 LELGEQVFARV 395 (686)
Q Consensus 385 ~~~a~~~~~~~ 395 (686)
+++|..+++.+
T Consensus 202 ~~~A~~~~~~~ 212 (355)
T cd05804 202 YEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6e-05 Score=75.49 Aligned_cols=408 Identities=14% Similarity=0.076 Sum_probs=245.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC--CC-hhhHHHHHHHHHccCCHHHHHHHH
Q 005642 118 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVF 194 (686)
Q Consensus 118 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~ 194 (686)
.++++.|...+...+...+. +...|+.-..+|...|++++|++--.+-.+ |+ ...|+....++.-.|++++|+.-|
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred cccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 37899999999998887644 888999999999999999999987766664 44 347899999999999999999999
Q ss_pred hhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHH-HHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc
Q 005642 195 DRTTDT---SSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270 (686)
Q Consensus 195 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 270 (686)
.+..+. |...++.+..++... . .+.+.|..- .-.++.-++.|-..+ ....+. .+++.+.+. +.
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~-----~~~~~~---~~l~~~~~~--p~ 160 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSL-----SDPAYV---KILEIIQKN--PT 160 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhh-----ccHHHH---HHHHHhhcC--cH
Confidence 998763 455677777666111 1 111111100 000112222221111 111111 111111111 00
Q ss_pred hHHHH---HHHHHHHHhcCChhH-HHHHHHhc-----ccC------------C----------chhHHHHHHHHHhCCCH
Q 005642 271 DVIVA---SALLDTYSKRGMPSD-ACKLFSEL-----KVY------------D----------TILLNTMITVYSSCGRI 319 (686)
Q Consensus 271 ~~~~~---~~l~~~~~~~g~~~~-A~~~~~~~-----~~~------------~----------~~~~~~li~~~~~~g~~ 319 (686)
+...| ..++.+....-..+. ....-..+ ..| | ..-...+.++..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 11000 011111111000000 00000000 000 0 11244567777788888
Q ss_pred HHHHHHHhhCCCC--CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC--C----HHHHHHHHHHHHccCChHHHHHH
Q 005642 320 EDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM--D----KFSLASVISACANISSLELGEQV 391 (686)
Q Consensus 320 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~t~~~ll~~~~~~~~~~~a~~~ 391 (686)
+.|.+.+....+- ++.-++....+|...|.+.++...-....+.|... + ...+..+..++.+.++++.+...
T Consensus 241 ~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 241 ETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 8888888776653 44456677778888888888777777666654221 1 11222334456667888999999
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 005642 392 FARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTI-ITFTAILSACDHCGLVKEGQKWFDAMKWQYHID 470 (686)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 470 (686)
|.+....--.|+...-..-+. +++...+...- +.|.. .-...-...+.+.|++..|+..|.++++ ..
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~E-------k~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk---r~ 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAE-------KALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK---RD 388 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHH-------HHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---cC
Confidence 988665443443222111111 22222222221 22222 1122225567889999999999999984 23
Q ss_pred C-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 471 P-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 471 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
| |...|....-+|.+.|.+..|+.-.+.. ...|+ ...|..-..++....+++.|...|.+.++.+|++......+..
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 6 7899999999999999999999887776 35665 4557777777888889999999999999999988776666665
Q ss_pred HHhh
Q 005642 548 IFAT 551 (686)
Q Consensus 548 ~~~~ 551 (686)
....
T Consensus 469 c~~a 472 (539)
T KOG0548|consen 469 CVEA 472 (539)
T ss_pred HHHH
Confidence 5544
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.65 E-value=0.00012 Score=75.17 Aligned_cols=306 Identities=9% Similarity=-0.061 Sum_probs=175.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcCHHHH-HHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTL-ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
...|..+...+...|+.+++...+.+..+.. ..++.... ......+...|+++.+.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 4456667777777777777766666655432 11222211 122233456677777777777777653 223333321 2
Q ss_pred HHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHH
Q 005642 280 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDL 356 (686)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 356 (686)
..+...|+.. +..+.+.+.+......+ ......+...+...|++++|...
T Consensus 84 ~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 136 (355)
T cd05804 84 LGAFGLGDFS---------------------------GMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEA 136 (355)
T ss_pred HHHHHhcccc---------------------------cCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222222221 22222223332322222 23444556678889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCC
Q 005642 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT 436 (686)
Q Consensus 357 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~ 436 (686)
+++..+.. +.+...+..+...+...|++++|...+....+.... .|+
T Consensus 137 ~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--------------------------------~~~ 183 (355)
T cd05804 137 ARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--------------------------------SSM 183 (355)
T ss_pred HHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--------------------------------Ccc
Confidence 99998863 334556677888888999999999888876654211 112
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-HhC-CCCCC---
Q 005642 437 --IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHY-S--CMVDLFARAGCLNEAVNL--I-EQM-PFEAD--- 504 (686)
Q Consensus 437 --~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~--- 504 (686)
...|..+...+...|++++|..++++........+..... . .+..-+...|....+.+. + ... ...|.
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~ 263 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGL 263 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccc
Confidence 2345567777888899999999999875221111111111 1 233333444433333222 1 111 11011
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccC-C--------CCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELD-P--------ENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 505 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.........++...|+.+.|...++.+.... . .........+.++...|++++|.+.+....+.+
T Consensus 264 ~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 264 AFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1222356667788899999999988876622 1 123445667778889999999999998887654
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.61 E-value=8e-07 Score=81.40 Aligned_cols=119 Identities=9% Similarity=0.150 Sum_probs=102.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hh
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGC-VAHGD--KG 522 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~-~~~g~--~~ 522 (686)
..++.+++...++...+ ..| +...|..++..|...|++++|...|++. ...| +...+..+..++ ...|+ .+
T Consensus 51 ~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 36677788888887762 345 7899999999999999999999999988 4566 577788888864 67777 59
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 523 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
+|.++++++++.+|+++.++..++..+.+.|++++|...++++.+...
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999987644
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=1.8e-06 Score=74.69 Aligned_cols=107 Identities=13% Similarity=-0.006 Sum_probs=71.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCV 516 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~ 516 (686)
+..+...+...|++++|...|+... ...| +...+..+..++.+.|++++|...|++. ...| +...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445556667777777777777766 2344 5666777777777777777777777766 3334 4566666677777
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
..|+.++|+..++++++..|+++..+...+.+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 777777777777777777777766665555544
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=2.4e-06 Score=88.14 Aligned_cols=217 Identities=12% Similarity=0.069 Sum_probs=163.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 005642 306 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 385 (686)
Q Consensus 306 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 385 (686)
-..+...+.+.|-...|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||...|..+.+.....--+
T Consensus 401 q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHH
Confidence 345556666777777777777753 4678888888888988888888877776 467777777776655444445
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005642 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465 (686)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (686)
++|.++.++.-. ..-..+.....+.++++++.+.|+.-.
T Consensus 474 EkawElsn~~sa----------------------------------------rA~r~~~~~~~~~~~fs~~~~hle~sl- 512 (777)
T KOG1128|consen 474 EKAWELSNYISA----------------------------------------RAQRSLALLILSNKDFSEADKHLERSL- 512 (777)
T ss_pred HHHHHHhhhhhH----------------------------------------HHHHhhccccccchhHHHHHHHHHHHh-
Confidence 555555443211 111112222334688999999998866
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 466 QYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 466 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
.+.| ...+|..+..+..+.++++.|.+.|... ...|| ...|+++-.+|.+.|+..+|...++++++.+-++..+|
T Consensus 513 --~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 513 --EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIW 590 (777)
T ss_pred --hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeee
Confidence 4556 6889999999999999999999999887 47776 66799999999999999999999999999888888999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHhcCCCC
Q 005642 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGK 572 (686)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 572 (686)
.+...+..+-|.|++|.+.+..+.+.....
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999888654433
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=2.5e-05 Score=78.80 Aligned_cols=234 Identities=11% Similarity=0.093 Sum_probs=157.8
Q ss_pred HHHhCCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHH
Q 005642 312 VYSSCGRIEDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISACANISSLEL 387 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 387 (686)
-+.+.|++.+|.-.|+.....|+ ..|.-|......+++-..|+..+++..+. .|+ ...+..|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 34455666666666665555433 45666666666666666666666666653 343 3444455555666666666
Q ss_pred HHHHHHHHHHhCCC-------------------cchhHHHHHHHHHHhchhHHHHHHHHHH-HCCCCCCHHHHHHHHHHH
Q 005642 388 GEQVFARVTIIGLD-------------------SDQIISTSLVDFYCKCGYDALALFNEMR-NTGVKPTIITFTAILSAC 447 (686)
Q Consensus 388 a~~~~~~~~~~~~~-------------------~~~~~~~~li~~~~~~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~ 447 (686)
|...++.-++..++ ++..... ...++|-++. ..+.++|+.....|.-.|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~-----------~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLA-----------HIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHH-----------HHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 66666644332210 1111111 3344444444 445457888888888889
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A 524 (686)
--.|++++|...|+.+. .++| |...|+-|+..++...+.++|+..|+++ .++|. ++++..|.-.|...|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 99999999999999988 5678 7889999999999999999999999998 58887 56677788899999999999
Q ss_pred HHHHHHHHccCCC-----C-----chhHHHHHHHHhhcCCcchHHHH
Q 005642 525 RKVAERMIELDPE-----N-----ACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 525 ~~~~~~~~~~~p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
...+-.++.+.+. . ..+|.+|=.++.-.++.|-+.++
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 9999999986554 1 13566666666666666544443
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.7e-07 Score=57.57 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=30.2
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhccC
Q 005642 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 167 (686)
Q Consensus 134 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (686)
.|+.||..+||+||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999884
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=2.2e-06 Score=74.25 Aligned_cols=107 Identities=10% Similarity=-0.025 Sum_probs=92.3
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 005642 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535 (686)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 535 (686)
.++++.. .+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4555554 34454 3556788899999999999999997 4555 67889999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 536 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
|+++.++..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999888754
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=0.00044 Score=80.63 Aligned_cols=251 Identities=13% Similarity=0.025 Sum_probs=117.2
Q ss_pred HHHHhcCChHHHHHHHhccCC----CCh----hhHHHHHHHHHccCCHHHHHHHHhhcCC-------CC--hhhHHHHHH
Q 005642 148 NLYGKCGDFNSANQVLNMMKE----PDD----FCLSALISGYANCGKMNDARRVFDRTTD-------TS--SVMWNSMIS 210 (686)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~ 210 (686)
..+...|++++|...+++..+ .+. ...+.+...+...|++++|...+++... +. ..++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 334456666666666655432 111 1223344445566666666666654432 11 123344455
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCC--c-CHHHHHHHHHHHHccCChhhHHHHHHHHHHc----CCCchHHHHHHHH
Q 005642 211 GYISNNEDTEALLLFHKMRRN----GVL--E-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GVIDDVIVASALL 279 (686)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~l~ 279 (686)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 556666666666666554431 111 1 1122233334444556666666666555432 1111122333445
Q ss_pred HHHHhcCChhHHHHHHHhccc----C-CchhH-----HHHHHHHHhCCCHHHHHHHHhhCCCCCch-------hHHHHHH
Q 005642 280 DTYSKRGMPSDACKLFSELKV----Y-DTILL-----NTMITVYSSCGRIEDAKHIFRTMPNKSLI-------SWNSMIV 342 (686)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~ 342 (686)
..+...|++++|...+.+... . ....+ ...+..+...|+.+.|...+.....+... .+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 555666666666666555431 0 00001 01113334456666666665554432110 1223444
Q ss_pred HHHhCCChhhHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 343 GLSQNGSPIEALDLFCNMNKL----DLRMD-KFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666555432 11111 123344444555666666666666655543
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=2.5e-05 Score=74.71 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=116.3
Q ss_pred CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHH
Q 005642 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK----FSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (686)
....+..++..+...|++++|...|+++... .|+. .++..+..++...|++++|...++.+++...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-------- 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-------- 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--------
Confidence 4456667777777788888888888777663 3432 2445556666677777777766666654321
Q ss_pred HHHHHHHhchhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 005642 409 SLVDFYCKCGYDALALFNEMRNTGVKPTI-ITFTAILSACDHC--------GLVKEGQKWFDAMKWQYHIDPE-IEHYSC 478 (686)
Q Consensus 409 ~li~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 478 (686)
-.|.. .++..+..++... |+.++|.+.++.+.+. .|+ ...+..
T Consensus 102 ------------------------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a 154 (235)
T TIGR03302 102 ------------------------NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDA 154 (235)
T ss_pred ------------------------CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHH
Confidence 01111 2344444455443 6777888888887732 343 222222
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHHhhcCCc
Q 005642 479 MVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN---ACAYIQLSSIFATSGEW 555 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 555 (686)
+..... ..... ......+...+...|++++|...++++++..|++ +..+..++.++...|++
T Consensus 155 ~~~~~~----~~~~~-----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 155 KKRMDY----LRNRL-----------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHH----HHHHH-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 211111 00000 0111245667889999999999999999987764 46889999999999999
Q ss_pred chHHHHHHHHHhc
Q 005642 556 EKSSLIRDIMREK 568 (686)
Q Consensus 556 ~~a~~~~~~~~~~ 568 (686)
++|..+++.+...
T Consensus 220 ~~A~~~~~~l~~~ 232 (235)
T TIGR03302 220 DLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888754
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.42 E-value=0.0031 Score=63.55 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=72.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 005642 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KN-DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 147 (686)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~ 147 (686)
|+.+|+.||.-+-.+ .++++.+.|+++.. |. ...|..-|..-... ++++..+.+|.+++..-+. ...|...+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s--kdfe~VEkLF~RCLvkvLn--lDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELAS--KDFESVEKLFSRCLVKVLN--LDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhh--HhHHHHHH
Confidence 778888888876555 88888888888876 32 34566666665555 6788888888888776444 45555555
Q ss_pred HHHHh-cCChHHHHHH----HhccC-----C-CChhhHHHHHHH---------HHccCCHHHHHHHHhhcCC
Q 005642 148 NLYGK-CGDFNSANQV----LNMMK-----E-PDDFCLSALISG---------YANCGKMNDARRVFDRTTD 199 (686)
Q Consensus 148 ~~~~~-~g~~~~A~~~----~~~~~-----~-~~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~ 199 (686)
..-.+ .|+...++.. |+-.. + .....|+..+.- +....+++...+++.++..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 43332 2333332221 11111 1 222334444433 3455577777788877654
No 114
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=0.00013 Score=72.03 Aligned_cols=209 Identities=11% Similarity=0.040 Sum_probs=126.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF-SLASVISACANIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFY 414 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 414 (686)
+..+-..+...++.++|+.+..++++. .|+.. +++.-..++...| ++++++..++.+.+... .+..+|+..-..+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 333444455566777777777777663 44433 3333333344445 45677777776666542 2333444332223
Q ss_pred Hhchh----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhc---
Q 005642 415 CKCGY----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARA--- 486 (686)
Q Consensus 415 ~~~~~----~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--- 486 (686)
.+.+. +++.+++++.+...+ |..+|+....++.+.|+++++++.++++++ ..| +...|+....++.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhcccc
Confidence 33322 456667677765544 667777777777788888888888888873 234 566666666555544
Q ss_pred CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 487 GCL----NEAVNLIEQM-PFEA-DVGMWSSILRGCVAH----GDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 487 g~~----~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
|.. ++.+++..++ ...| +...|+.+...+... ++..+|...+.+..+.+|+++.++..|+.+|++.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 222 3455555333 4555 456677777777663 3345677778887777888888888888888763
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=6.3e-07 Score=55.00 Aligned_cols=32 Identities=28% Similarity=0.632 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005642 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463 (686)
Q Consensus 432 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (686)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.34 E-value=7.3e-05 Score=82.75 Aligned_cols=221 Identities=13% Similarity=0.099 Sum_probs=130.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 005642 173 CLSALISGYANCGKMNDARRVFDRTTDT--------SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244 (686)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 244 (686)
.|-..+..+.+.++.++|++++++..+. -...|.+++..-..-|.-+...++|+++.+. .-....|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHH
Confidence 3444555555555555555555544321 1234555555555556556666666666553 11233455566
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhccc--C---CchhHHHHHHHHHhCCCH
Q 005642 245 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--Y---DTILLNTMITVYSSCGRI 319 (686)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~ 319 (686)
..|.+.+.+++|.++++.|.+. +.-...+|...++.+.++.+-+.|..++.+... | -.....-.+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666666666666666666665 334555666666666666666666666665541 1 122334445555566666
Q ss_pred HHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHH
Q 005642 320 EDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK--FSLASVISACANISSLELGEQVFAR 394 (686)
Q Consensus 320 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~ 394 (686)
+.+..+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-. ..|...+..=-..|+-+.++.+=.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 7766666666542 3467888888888888888888888888888777654 4566666655565665555554444
Q ss_pred HH
Q 005642 395 VT 396 (686)
Q Consensus 395 ~~ 396 (686)
+.
T Consensus 1697 A~ 1698 (1710)
T KOG1070|consen 1697 AK 1698 (1710)
T ss_pred HH
Confidence 43
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00032 Score=64.12 Aligned_cols=118 Identities=9% Similarity=0.054 Sum_probs=86.8
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHG 519 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g 519 (686)
.+.+..+.+-|.+.+++|.+ + .+-.+.+.|..++.+ .+.+.+|.-+|+++. ..|+..+.+-...++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 34566677888888888872 2 244555555555543 456888888898883 6788888888888888899
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH-HHHHHHh
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL-IRDIMRE 567 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~ 567 (686)
++++|..+++.+++.+|+++.+..+++-.-...|.-.++.. .+.+++.
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999888888888888777777777655544 5665554
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=1.3e-05 Score=69.07 Aligned_cols=100 Identities=17% Similarity=0.298 Sum_probs=77.2
Q ss_pred CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 469 IDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 469 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
..| +......++..+...|++++|.+.|+.+ ...| +...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 445 4556667777778888888888888776 3334 566677777888888888888888888888888888888888
Q ss_pred HHHHhhcCCcchHHHHHHHHHhc
Q 005642 546 SSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888877664
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00014 Score=80.72 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhccCC--------CChhhHHHHHHHHHccCCHHHHHHHHhhcCCC-C-hhhHHHHHH
Q 005642 141 VLGSSLVNLYGKCGDFNSANQVLNMMKE--------PDDFCLSALISGYANCGKMNDARRVFDRTTDT-S-SVMWNSMIS 210 (686)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~ 210 (686)
..|-..|..+...++.+.|+++++++.. --...|.++++.-..-|.-+...++|++..+- | -..|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3444444444444455555544444432 00123444444433444444444444444431 1 223444444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChh
Q 005642 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~ 289 (686)
.|.+.+++++|.++|+.|.++ +.-....|...+..+.+.++-+.|..++.++++.=+.. ......-.+..-.+.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 444445555555555554443 22333344444444444444444444444444431110 1223333344444445555
Q ss_pred HHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 005642 290 DACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 331 (686)
Q Consensus 290 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 331 (686)
.+..+|+... +.-...|+..++.-.+.|+.+.++.+|++...
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5444444443 11233444445444455555555555544433
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0007 Score=61.94 Aligned_cols=238 Identities=10% Similarity=0.104 Sum_probs=145.8
Q ss_pred cCCcHHHHHHhccCCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHH--HHHHHhcChhhHHHHHHHHH
Q 005642 54 CGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML--ISGFAKADLAALEYGKQIHS 129 (686)
Q Consensus 54 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l--l~~~~~~~~~~~~~a~~i~~ 129 (686)
.|.+..++..-..... .+...---+-++|...|.+...+. ++.......+.++ +..+...+...-+.-..+.+
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 3666666655444332 233333344556666665443322 2222111111111 12222222222333445556
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCC-hhhHHHH
Q 005642 130 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS-SVMWNSM 208 (686)
Q Consensus 130 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l 208 (686)
.+.......+......-...|++.|++++|++...... +......-...+.+..+++-|...+++|.+.| ..+.+.|
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQL 175 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQL 175 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 66655555555555555667889999999999988833 33344444556778889999999999998854 3455555
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 005642 209 ISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284 (686)
Q Consensus 209 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 284 (686)
..++.+ .++..+|.-+|++|-++ .+|+.-+.+....++...|++++|..+++..+.... .++.+...++.+-..
T Consensus 176 A~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 176 AQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALH 253 (299)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHH
Confidence 555544 45688899999999765 688888888888888899999999999998888753 356666666666666
Q ss_pred cCChhHH-HHHHHhc
Q 005642 285 RGMPSDA-CKLFSEL 298 (686)
Q Consensus 285 ~g~~~~A-~~~~~~~ 298 (686)
.|...++ .+.+.++
T Consensus 254 ~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQL 268 (299)
T ss_pred hCCChHHHHHHHHHH
Confidence 6665444 3444433
No 121
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.26 E-value=0.0063 Score=60.16 Aligned_cols=432 Identities=12% Similarity=0.078 Sum_probs=201.0
Q ss_pred HHhcCCcHHHHHHhccCCCC---C------hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhh
Q 005642 51 YMRCGNPTDALLLFDEMPRR---N------CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAA 120 (686)
Q Consensus 51 ~~~~g~~~~A~~~~~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~ 120 (686)
+-+++++.+|.++|.++-.. + .+.-+.++++|... +.+.....+....+ -....|..+..+...-..+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 45667788888887776531 2 12234556665433 34444444443333 22455666666554443456
Q ss_pred HHHHHHHHHHHHHc--CCC------------CChhHHHHHHHHHHhcCChHHHHHHHhccCC--------CChhhHHHHH
Q 005642 121 LEYGKQIHSHILVN--GLD------------FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--------PDDFCLSALI 178 (686)
Q Consensus 121 ~~~a~~i~~~~~~~--g~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li 178 (686)
...|.+.+...... +.. +|...-+..+..+...|++.+++.+++++.+ .+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 66666666555443 211 2222334455555566666666666665542 3445555443
Q ss_pred HHHHccCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHcc-
Q 005642 179 SGYANCGKMNDARRVFDRTTDTS-SVMWNSMISGYISNNEDTEALLLFHKMRRN------GVLEDASTLASVLSACSSL- 250 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~- 250 (686)
-.+++.=-++.-. ....| ..-|.-+|..|. ++|... .+.|....+..++....-.
T Consensus 175 lmlsrSYfLEl~e-----~~s~dl~pdyYemilfY~------------kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p 237 (549)
T PF07079_consen 175 LMLSRSYFLELKE-----SMSSDLYPDYYEMILFYL------------KKIHAFDQRPYEKFIPEEELFSTIMQHLFIVP 237 (549)
T ss_pred HHHhHHHHHHHHH-----hcccccChHHHHHHHHHH------------HHHHHHhhchHHhhCcHHHHHHHHHHHHHhCC
Confidence 3333211111000 00000 111222333322 222111 1334444444444333211
Q ss_pred -CChhhHHHHHHHHHHcCCCchHH-HHHHHHHHHHhcCChhHHHHHHHhcc--------cCCchhHHHHHHHHHhCCCHH
Q 005642 251 -GFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFSELK--------VYDTILLNTMITVYSSCGRIE 320 (686)
Q Consensus 251 -~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~ 320 (686)
....--.++++.-...-+.|+-. +...|..-+.+ +.+++..+.+.+. +.=..++..++....+.++..
T Consensus 238 ~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~ 315 (549)
T PF07079_consen 238 KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTE 315 (549)
T ss_pred HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 12222233333333333444433 23344444443 4444444444333 122345667777777777777
Q ss_pred HHHHHHhhCCC--CCch-------hHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHH-HHHHH---HHHHccC
Q 005642 321 DAKHIFRTMPN--KSLI-------SWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFS-LASVI---SACANIS 383 (686)
Q Consensus 321 ~A~~~~~~~~~--~~~~-------~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll---~~~~~~~ 383 (686)
.|.+.+.-+.. |+.. +-..+-...+. .-+..+-+.++....... .|..- ..-++ .-+-+.|
T Consensus 316 ~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 316 EAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcC
Confidence 77776665443 2221 11112222221 112223344444444332 12211 11111 2223334
Q ss_pred C-hHHHHHHHHHHHHhCCCcchhHHHHHHHH----HHhchh-----HHHHHHHHHHHCCCCCCHH----HHHHHHH--HH
Q 005642 384 S-LELGEQVFARVTIIGLDSDQIISTSLVDF----YCKCGY-----DALALFNEMRNTGVKPTII----TFTAILS--AC 447 (686)
Q Consensus 384 ~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~~-----~A~~~~~~m~~~~~~p~~~----~~~~ll~--~~ 447 (686)
. -++|..+++.+.+-. +-|...-|..... |...-. +-+.+-+-..+.|++|-.+ .-|.|.. .+
T Consensus 394 ~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 3 677777777766532 2233322222221 111100 2222223334556665432 2333333 34
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSS 510 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 510 (686)
..+|++.++.-+-..+. .+.|++.+|..++-.+....++++|+..+.+++ |+..++++
T Consensus 473 ysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 56788888876666655 578888899888888888889999999998875 56655554
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.25 E-value=0.00011 Score=67.23 Aligned_cols=105 Identities=9% Similarity=0.123 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHH
Q 005642 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLF-ARAGC--LNEAVNLIEQM-PFEA-DVGMW 508 (686)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~ 508 (686)
.|...|..+...|...|++++|...|++.. .+.| +...+..+..++ ...|+ .++|.+++++. ...| +...+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 378889999999999999999999999988 3556 788888888874 67777 59999999998 4556 57788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
..+...+...|++++|+..++++++..|.+..-+
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 8899999999999999999999999888766533
No 123
>PLN02789 farnesyltranstransferase
Probab=98.23 E-value=0.00033 Score=69.11 Aligned_cols=183 Identities=10% Similarity=0.041 Sum_probs=134.1
Q ss_pred HccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhch---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH--H
Q 005642 380 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG---YDALALFNEMRNTGVKPTIITFTAILSACDHCGLV--K 454 (686)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--~ 454 (686)
...+..++|.....++++.. +-+..+|+.--..+...+ ++++..++++.+...+ +..+|+.-...+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 34567788999999888765 334445555555555555 2899999998877655 555677655555556653 6
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh----hHH
Q 005642 455 EGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAH---GDK----GLG 524 (686)
Q Consensus 455 ~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~---g~~----~~A 524 (686)
+++.+++++. ...| +..+|.....++.+.|+++++++.++++ ...| +...|+.....+.+. |.. +.+
T Consensus 126 ~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 7888888887 3456 7889999999999999999999999998 3444 567787776666554 222 467
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHhh----cCCcchHHHHHHHHHh
Q 005642 525 RKVAERMIELDPENACAYIQLSSIFAT----SGEWEKSSLIRDIMRE 567 (686)
Q Consensus 525 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 567 (686)
+....++++.+|++..+|..+..++.. .++..+|.+.+.+..+
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 788889999999999999999999987 3456678887776554
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.22 E-value=4.7e-05 Score=69.48 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=92.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAH 518 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~ 518 (686)
..+-..+...|+-+....+..... ...+.+......++....+.|++.+|...+++.. -++|...|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 445556666777777777766654 1223356666667788888888888888888772 445777888888888888
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
|+++.|...|.+++++.|.++.++.+++..|.-.|+++.|..++.....
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888776654
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.22 E-value=0.00066 Score=74.84 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
.++.-+-..|....+++++..+++.+++.+|+|..+...++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 344445566667777778888888888888777777777777665
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=4.1e-05 Score=79.33 Aligned_cols=206 Identities=12% Similarity=0.042 Sum_probs=107.8
Q ss_pred HHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhH
Q 005642 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256 (686)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 256 (686)
+...+.+.|-...|..+|++ ...|.-+|.+|...|+..+|..+..+-.+ -+||+..|..+........-+++|
T Consensus 404 laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 33445555555555555554 34555555666666655556555555544 245555555555554444444444
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC--
Q 005642 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-- 331 (686)
Q Consensus 257 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 331 (686)
.++.+..-. ..-..+.....+.++++++.+.|+.-. +....+|-.+..+..+.++++.|.+.|.....
T Consensus 477 wElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 477 WELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 444433221 111222222333455666666555433 22344555555566666666666666655543
Q ss_pred C-CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 332 K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 332 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
| +..+||++-.+|.+.++-.+|...+.+..+.+ .-+-..+...+....+.|.+++|.+.+..+.+
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 2 23466666666666666666666666666554 33333444444455566666666666665543
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.21 E-value=9e-05 Score=67.69 Aligned_cols=126 Identities=10% Similarity=0.043 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
|.......+....+.|++.+|...+++.. ..-++|...|+.+.-+|.+.|+.++|..-|.+. .+.| ++...+++..
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 55566678888999999999999999988 244558999999999999999999999999887 4555 5677889999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHH
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
.+.-.||.+.|..++.......+.+..+-..++-+....|++++|..+..
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999999999998888899999999999999999999999865
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=0.0006 Score=67.97 Aligned_cols=219 Identities=12% Similarity=0.066 Sum_probs=124.6
Q ss_pred HHHHHHcCCCCCh--hHHHHHHHHHHhcCC--------------hHHHHHHHhccCC------CChhhHHHHHHHHHccC
Q 005642 128 HSHILVNGLDFDS--VLGSSLVNLYGKCGD--------------FNSANQVLNMMKE------PDDFCLSALISGYANCG 185 (686)
Q Consensus 128 ~~~~~~~g~~~~~--~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g 185 (686)
...+.+.|..|.. .++..+-..+...+. +.+++...+.++. |+...+...+.+.....
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~ 288 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEAL 288 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccc
Confidence 4455666766653 345555554422222 3344444455542 34444445555444333
Q ss_pred CHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 005642 186 KMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264 (686)
Q Consensus 186 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 264 (686)
.-..+..++.+..+ .....+.-....+...|++++|+..++.++.. .+-|..........+.+.++.++|.+.++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal 367 (484)
T COG4783 289 PNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKAL 367 (484)
T ss_pred cccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 33333333333222 23344444445555677777777777777664 23344444445566777777777777777777
Q ss_pred HcCCCch-HHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHH
Q 005642 265 KVGVIDD-VIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 340 (686)
Q Consensus 265 ~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 340 (686)
... |+ ....-.+..+|.+.|++.+|+..++... +.|+..|..|..+|...|+..++....
T Consensus 368 ~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-------------- 431 (484)
T COG4783 368 ALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-------------- 431 (484)
T ss_pred hcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH--------------
Confidence 753 33 5555667777777777777777777665 335666777777777776666554433
Q ss_pred HHHHHhCCChhhHHHHHHHHHHC
Q 005642 341 IVGLSQNGSPIEALDLFCNMNKL 363 (686)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~ 363 (686)
...|...|+++.|...+....+.
T Consensus 432 AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 432 AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh
Confidence 23555666677666666666554
No 129
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.20 E-value=1.9e-05 Score=67.04 Aligned_cols=98 Identities=9% Similarity=0.058 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
+.+..-.+...+...|++++|..+|+-+ ...| +..-|..|.-++...|++++|+..|.++..++|+++.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566667777888999999999999988 4666 5677899999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|+.+.|++.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999888653
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=9.3e-05 Score=80.56 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=116.7
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHH
Q 005642 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWS 509 (686)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~ 509 (686)
...+...+..|.....+.|.+++|..+++... .+.| +......++.++.+.+++++|...+++. ...|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34467888899999999999999999999988 4678 4778888999999999999999999988 46675 55677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.+..++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888999999999999999999989999999999999999999999999999888653
No 131
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.14 E-value=0.0002 Score=68.48 Aligned_cols=181 Identities=10% Similarity=-0.014 Sum_probs=108.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-H---HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH--HHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-A---STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV--IVA 275 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~ 275 (686)
...+..+...+...|++++|...|++.... .|+ . .++..+..++...|+++.|...++.+++....... .++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 445666666677777777777777776653 232 1 34555666667777777777777777665321111 134
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHhccc--CCc-hhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHH
Q 005642 276 SALLDTYSKR--------GMPSDACKLFSELKV--YDT-ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 344 (686)
Q Consensus 276 ~~l~~~~~~~--------g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 344 (686)
..+..++... |++++|.+.|+.+.. |+. ..+..+..... ..... ......+...+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~~~ 176 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNRL----------AGKELYVARFY 176 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHHH----------HHHHHHHHHHH
Confidence 4444555443 678888888887762 222 22222211100 00000 01122456678
Q ss_pred HhCCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 345 SQNGSPIEALDLFCNMNKLDL--RMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
.+.|++++|+..++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888999999999988876521 123467778888888999999988888776654
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00027 Score=64.08 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=119.8
Q ss_pred CChhhHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHH
Q 005642 348 GSPIEALDLFCNMNK---LD-LRMDKFS-LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDAL 422 (686)
Q Consensus 348 g~~~~A~~~~~~m~~---~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~ 422 (686)
.+.++.++++.++.. .| ..|+..+ |..++-+....|+.+.|...++.+.+.- +.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~-------------------- 84 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PG-------------------- 84 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CC--------------------
Confidence 456666666666652 23 4555544 3355556667777777777777766543 11
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005642 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-- 499 (686)
Q Consensus 423 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 499 (686)
+..+-..-..-+-..|++++|+++++.+.++ +| |..++---+.+.-..|+.-+|++-+.+.
T Consensus 85 -------------S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 85 -------------SKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred -------------ChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1111111111234467788888888887732 34 5666666666666777777777766665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC---CcchHHHHHHHHHhcC
Q 005642 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG---EWEKSSLIRDIMREKH 569 (686)
Q Consensus 500 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 569 (686)
.+..|...|.-+...|...|++++|...+++++=..|-++..+..++.++...| +++-+++++.+..+..
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 355678888888888888888888888888888888888777777887776654 5666677777666543
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.06 E-value=0.03 Score=60.33 Aligned_cols=91 Identities=10% Similarity=0.203 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHH
Q 005642 439 TFTAILSACDHCGLVK---EGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSI 511 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l 511 (686)
+.+.|+..|.+.++.. +|+-+++.-. ...| |..+--.++.+|+-.|-+..|.++|+.+. +.-|...|. +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~gl---t~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGL---TKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-H
Confidence 3456667777777665 3444444433 2233 55555667788888888888888888874 222322221 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHc
Q 005642 512 LRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...+...|++..+...+.....
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHH
Confidence 2334455666666666555555
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=8.6e-05 Score=74.66 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGC 515 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~ 515 (686)
....+|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556677778889999999999999832 355 4456888888889999999999887 3344 667777777889
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
...++++.|+.+++++.+..|++..+|..|+.+|...|+++.|...+..+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999988743
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.03 E-value=0.00014 Score=62.53 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
......+...+...|++++|.+.++.+.. ..| +...+..+...+.+.|++++|...+++. ...| +...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 35566677788899999999999999873 234 7889999999999999999999999987 3445 5777888889
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.+...|+.++|...++++++..|++..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhccccch
Confidence 999999999999999999999998765
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=5.6e-05 Score=70.41 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=91.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKG 522 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~ 522 (686)
-..+.+++++|+..|.+.+ .+.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ...|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3567899999999999998 5777 7888888999999999999999998887 46775 678999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcc
Q 005642 523 LGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556 (686)
Q Consensus 523 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 556 (686)
+|++.|+++++++|++......|-.+-.+.+...
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876666666555555444
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=1.2e-05 Score=50.17 Aligned_cols=34 Identities=35% Similarity=0.555 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 236 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 236 (686)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.99 E-value=0.04 Score=59.42 Aligned_cols=402 Identities=11% Similarity=0.071 Sum_probs=193.3
Q ss_pred hcCChHHHHHHHhccCC--CChhhHHHHHHH--HHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHH
Q 005642 152 KCGDFNSANQVLNMMKE--PDDFCLSALISG--YANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLL 224 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 224 (686)
..+++..|.+..++..+ |+ ..|...+.+ +.+.|+.++|..+++.... .|..+...+-.+|.+.++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45777778777777664 44 344445554 3577888888777765432 3566777777777778888888888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC-Ch---------hHHHHH
Q 005642 225 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-MP---------SDACKL 294 (686)
Q Consensus 225 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~---------~~A~~~ 294 (686)
|++.... -|+..-...+..++.+.+++.+-.+.--++.+. ++-+...+=+++..+...- .. .-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 8777663 566666677777777777766555444444442 3334444333444333221 11 123333
Q ss_pred HHhcccCC--ch---hHHHHHHHHHhCCCHHHHHHHHhh-----CCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 005642 295 FSELKVYD--TI---LLNTMITVYSSCGRIEDAKHIFRT-----MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364 (686)
Q Consensus 295 ~~~~~~~~--~~---~~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (686)
++.+.+.+ .. -...-...+...|++++|++++.. ...-+...-+.-+..+...+++.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 33333222 00 011112334445556666655521 111222333344445555566666555555555543
Q ss_pred CCCCHHHHHHHHHHHH----cc------------CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc---hh--H-HH
Q 005642 365 LRMDKFSLASVISACA----NI------------SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC---GY--D-AL 422 (686)
Q Consensus 365 ~~p~~~t~~~ll~~~~----~~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~--~-A~ 422 (686)
+|. |...+.... .. +.++...+...+.+... ....|-+=+..+.+. |+ + ..
T Consensus 257 --~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 257 --NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred --Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHH
Confidence 221 222111110 00 00011111111100000 000111111111110 11 0 00
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh-------HHHHHHHHHHhcCC-----hH
Q 005642 423 ALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE-------HYSCMVDLFARAGC-----LN 490 (686)
Q Consensus 423 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~-----~~ 490 (686)
..|+ +-|-+| .+..=+..|...=..+.-..++.... ...++.. -+.+.+......|. -+
T Consensus 330 ~y~~---kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 330 YYFK---KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred HHHH---HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 0111 111111 11111222222223333344444333 1222211 12233333333342 22
Q ss_pred HHHHHHHhC------C------CCCC---------HHHHHHHHHHHHhcCCh---hHHHHHHHHHHccCCCCchhHHHHH
Q 005642 491 EAVNLIEQM------P------FEAD---------VGMWSSILRGCVAHGDK---GLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 491 ~A~~~~~~~------~------~~p~---------~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
.-..++++. + .-|+ .-+-+.|++.|++.++. -+|+-+++.-+...|.|...-..++
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLi 480 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 233333322 1 1122 12356788889988874 4677788888889999999889999
Q ss_pred HHHhhcCCcchHHHHHHHHHhcCCCCC
Q 005642 547 SIFATSGEWEKSSLIRDIMREKHVGKL 573 (686)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 573 (686)
.+|+-.|-+..|.+.++.+--+.++.+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 999999999999999998876666554
No 139
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.98 E-value=0.0016 Score=71.15 Aligned_cols=142 Identities=11% Similarity=-0.024 Sum_probs=108.2
Q ss_pred CCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC---CchhHHHH
Q 005642 233 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY---DTILLNTM 309 (686)
Q Consensus 233 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 309 (686)
...+...+..|..+..+.|.+++|..+++.+.+.. +.+......++..+.+.+++++|...+++.... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 45567788888888888888888888888888853 335556777888888888888888888887732 44567777
Q ss_pred HHHHHhCCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 005642 310 ITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376 (686)
Q Consensus 310 i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 376 (686)
..++.+.|++++|..+|+++..++ ..++..+...+...|+.++|...|++..+. ..|....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 888888888888888888887543 467777888888888888888888888765 445555555544
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.98 E-value=0.027 Score=57.11 Aligned_cols=425 Identities=11% Similarity=0.060 Sum_probs=235.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISG 211 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 211 (686)
+-|+..|+.|+.-+... .++++++.++++.. | ....|...|..-.+..+++..+.+|.+... -+...|..-+.-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 55889999999877655 89999999999985 3 345788889999999999999999987654 467777776653
Q ss_pred HHh-cCChhH----HHHHHHHH-HHCCCCcCHH-HHHHHHHHH---------HccCChhhHHHHHHHHHHcCCCchHHHH
Q 005642 212 YIS-NNEDTE----ALLLFHKM-RRNGVLEDAS-TLASVLSAC---------SSLGFLEHGKQVHGHACKVGVIDDVIVA 275 (686)
Q Consensus 212 ~~~-~g~~~~----A~~~~~~m-~~~g~~p~~~-~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 275 (686)
-.+ +|+... ..+.|+-. .+.|+.+-+. .|..-+..+ ....+++..+++|.+++...+..=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 322 233332 23334333 3345555333 344444332 2334567777888888775433223344
Q ss_pred HHHHHHH-------------HhcCChhHHHHHHHhcc------cCC---------------chhHHHHHHHHHhCCCH--
Q 005642 276 SALLDTY-------------SKRGMPSDACKLFSELK------VYD---------------TILLNTMITVYSSCGRI-- 319 (686)
Q Consensus 276 ~~l~~~~-------------~~~g~~~~A~~~~~~~~------~~~---------------~~~~~~li~~~~~~g~~-- 319 (686)
+-....= -+...+..|.++++++. ... ...|-.+|.--...+--
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 4321100 01122444555555543 000 00122222211111100
Q ss_pred ------HHHHHHHhhCCC---CCchhHHHH-------HHHHHhCCC-------hhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 005642 320 ------EDAKHIFRTMPN---KSLISWNSM-------IVGLSQNGS-------PIEALDLFCNMNKLDLRMDKFSLASVI 376 (686)
Q Consensus 320 ------~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll 376 (686)
....=.+++... -.+..|.-- -..+...|+ .+++..+++.....-..-+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 001111100 011222222 334445555444332222333333333
Q ss_pred HHHHcc---CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 005642 377 SACANI---SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKP-TIITFTAILSACDHC 450 (686)
Q Consensus 377 ~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 450 (686)
..-... ...+....+++++...-...-.-+|-.++..-.+..- .|..+|.+..+.+..+ +....++++..++ .
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-s 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-S 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-c
Confidence 221111 1245555566655543322223345555555444433 7888999999888777 6677788887666 4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHH
Q 005642 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEAD--VGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~ 525 (686)
++.+-|.++|+.-.+.+| -++.--...++.+.+.++-..|..+|++.. +.|+ ...|..++.--..-|+...+.
T Consensus 415 kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 778899999998775443 345555677888889999999999999883 3443 577999999888999999998
Q ss_pred HHHHHHHccCCCC----chhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 526 KVAERMIELDPEN----ACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 526 ~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
++-++....-|.+ ...-..+.+.|.-.+.+.--..-++.+
T Consensus 493 ~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 493 KLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 8888888766621 122344556666666665544444433
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.96 E-value=0.0013 Score=72.70 Aligned_cols=218 Identities=12% Similarity=0.052 Sum_probs=143.1
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhccCC--CChh-hHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHH
Q 005642 134 NGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDF-CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 209 (686)
Q Consensus 134 ~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 209 (686)
..+.| +...+..|+..|...+++++|.++.+...+ |+.. .|-.+...+.+.++.+++..+ .++
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 34555 456788999999899999999999986664 4433 333333456667776655443 444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 005642 210 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
.......++.-...+.+.|.. ..-+...+..+..+|.+.|+.+++..+|+++++.. +.|+.+.|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 445555556444444445544 33455577778888888888888888888888876 55777888888888888 888
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc-----------------------hhHHHHHHHHHh
Q 005642 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL-----------------------ISWNSMIVGLSQ 346 (686)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------------------~~~~~li~~~~~ 346 (686)
+|..++.+. +..+...+++..+.+++.++..-++ .++-.+-..|-.
T Consensus 167 KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 167 KAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred HHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence 888877754 3335555566666666666554222 334444456667
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 380 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 380 (686)
.+++++++.+++.+.+.. +-|..+..-++.+|.
T Consensus 236 ~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 778888888888887752 234556666666665
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00027 Score=71.17 Aligned_cols=124 Identities=14% Similarity=0.129 Sum_probs=94.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCh
Q 005642 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 253 (686)
-..++..+...++++.|..+|+++.+.++.....++..+...++..+|++++++.++. .+-+...+..-...+.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 3345556667788888888888888777777777888888888888888888888864 344555666666677788888
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 254 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+.|..+.+++++.. +.+..+|..|..+|.+.|+++.|...++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888853 3345588888888888888888888887665
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.93 E-value=0.00034 Score=60.79 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH----HHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADV----GMWSSI 511 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l 511 (686)
..|..++..+ ..++...+...++.+.+..+-.| .......+...+...|++++|...|+... ..|+. .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 37788888888888875433322 23455567778888899999998888873 22443 234456
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
...+...|++++|+..++... ..+-.+..+...+.+|...|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777888899999988886633 23335567788888999999999999888753
No 144
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=0.00016 Score=71.85 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGL 523 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~ 523 (686)
.+...|++++|+..++.+.+ ..+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 45567899999999999873 33347788888899999999999999999988 46676 5667788899999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 524 GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 524 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
|+..+++....+|+++..|..|+.+|...|+..++.....+..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776554
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.90 E-value=3.3e-05 Score=57.24 Aligned_cols=65 Identities=25% Similarity=0.328 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC-CcchHHHHHHHHHhc
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG-EWEKSSLIRDIMREK 568 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 568 (686)
++..|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46778899999999999999999999999999999999999999999999 799999999987763
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=2.5e-05 Score=48.27 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 235 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 235 (686)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888877
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=2.8e-05 Score=48.45 Aligned_cols=34 Identities=35% Similarity=0.583 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 368 (686)
.+|+.++.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=6e-05 Score=70.23 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=82.3
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch
Q 005642 480 VDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 557 (686)
+.-+.+.+++++|+..|.+. .+.| |.+.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567889999999999988 5776 677788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCc
Q 005642 558 SSLIRDIMREKHVGKLPGC 576 (686)
Q Consensus 558 a~~~~~~~~~~~~~~~~~~ 576 (686)
|++.|++.. ..+|.+
T Consensus 168 A~~aykKaL----eldP~N 182 (304)
T KOG0553|consen 168 AIEAYKKAL----ELDPDN 182 (304)
T ss_pred HHHHHHhhh----ccCCCc
Confidence 999999554 466665
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.83 E-value=0.00022 Score=59.57 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHH
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQMP-FEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN---ACAYIQLSS 547 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 547 (686)
+..++..+.+.|++++|.+.|+.+. ..|+ ...+..+...+.+.|+++.|...++++....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344444445555555555554441 1121 2233445555555555555555555555555442 234555555
Q ss_pred HHhhcCCcchHHHHHHHHHhc
Q 005642 548 IFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555543
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.83 E-value=0.00016 Score=57.26 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...+++.....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677778888888877776 3334 34566677777778888888888888888888877777888888888888
Q ss_pred CcchHHHHHHHHHh
Q 005642 554 EWEKSSLIRDIMRE 567 (686)
Q Consensus 554 ~~~~a~~~~~~~~~ 567 (686)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888876654
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0058 Score=55.72 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=107.6
Q ss_pred CChhHHHHHHHHHHH---CC-CCcCHHH-HHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhH
Q 005642 216 NEDTEALLLFHKMRR---NG-VLEDAST-LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 290 (686)
Q Consensus 216 g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 290 (686)
.+.++.++++.+++. .| ..|+..+ |-.++-+....|+.+.|...+..+... ++-+..+...-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 455666666666643 23 4555553 334555555667777777777776665 34444444444444555677777
Q ss_pred HHHHHHhcccC---CchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 005642 291 ACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 364 (686)
Q Consensus 291 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (686)
|+++++.+... |.+++-.-+.+....|+--+|++-+....+ .|...|.-+...|...|++++|.-.++++.-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~- 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI- 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-
Confidence 77777776633 334455455555556666666665555544 46777777888888888888888777777763
Q ss_pred CCCCHH-HHHHHHHHHHcc---CChHHHHHHHHHHHHhC
Q 005642 365 LRMDKF-SLASVISACANI---SSLELGEQVFARVTIIG 399 (686)
Q Consensus 365 ~~p~~~-t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~ 399 (686)
.|... -+..+...+.-. .+++.+.++|+..++..
T Consensus 184 -~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 -QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred -CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 44333 333444443332 35566677777666654
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.81 E-value=5.8e-05 Score=55.12 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=52.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678889999999999999999999999999999999999999999999999887654
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.00045 Score=57.71 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD----VGMWSSI 511 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l 511 (686)
.++..+...+...|++++|.+.|+.+.....-.| ....+..++.++.+.|++++|...|+.+. ..|+ ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3456677788899999999999999984322112 24577789999999999999999999873 3343 4567888
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
..++...|+.++|...++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8889999999999999999999999876543
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00026 Score=66.52 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=92.5
Q ss_pred CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccCCCCchhH
Q 005642 469 IDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG---DKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 469 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
-.| |.+.|..|..+|...|+...|...|.+. ++.| ++..+..+..++..+. ...++..++++++..+|.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 356 8999999999999999999999999988 4444 5777777777765433 46788999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCcc
Q 005642 543 IQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCS 577 (686)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 577 (686)
..|+..+...|++.+|...++.|.+..+..+|..+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999999997765555543
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.002 Score=55.94 Aligned_cols=123 Identities=10% Similarity=0.142 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH--HHHHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED---ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV--IVASAL 278 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l 278 (686)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3666777777777776642 222 122333445566677777777777777766532321 233445
Q ss_pred HHHHHhcCChhHHHHHHHhcccC--CchhHHHHHHHHHhCCCHHHHHHHHhh
Q 005642 279 LDTYSKRGMPSDACKLFSELKVY--DTILLNTMITVYSSCGRIEDAKHIFRT 328 (686)
Q Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 328 (686)
...+...|++++|...++....+ ....+.....+|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666667777776666554322 222334444555555555555555543
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.71 E-value=6.4e-05 Score=46.43 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 367 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 367 (686)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777766665
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=5.7e-05 Score=58.51 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHH
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
+..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++++
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 33345555555555555555555 44444444444444555555555555555544
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.0004 Score=70.24 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=89.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG 519 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g 519 (686)
-...+...|++++|++.|+++++ ..| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34566788999999999999983 456 6788999999999999999999999988 4556 5677888999999999
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
++++|+..+++++++.|+++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988766665554333
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.00062 Score=61.22 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
...+..++..+...|++++|...|++.. ..|+ ...+..+...+...|++++|+..++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4556777777777888888888877662 2222 3567788888888999999999999999999988888888888
Q ss_pred HHhhcCC
Q 005642 548 IFATSGE 554 (686)
Q Consensus 548 ~~~~~g~ 554 (686)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.55 E-value=0.0011 Score=67.02 Aligned_cols=95 Identities=11% Similarity=0.032 Sum_probs=72.3
Q ss_pred HHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 005642 414 YCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLN 490 (686)
Q Consensus 414 ~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 490 (686)
+...|+ +|+..|++..+.... +...|..+..+|.+.|++++|+..++++. .+.| +...|..++.+|...|+++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHhCCHH
Confidence 334444 889999998876543 56778888888899999999999999887 3456 5778888889999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHH
Q 005642 491 EAVNLIEQM-PFEADVGMWSSIL 512 (686)
Q Consensus 491 ~A~~~~~~~-~~~p~~~~~~~li 512 (686)
+|...|++. ...|+.......+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999887 4666544444343
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.00078 Score=60.34 Aligned_cols=94 Identities=17% Similarity=0.031 Sum_probs=76.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
....+..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..++++++..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777888888899999999999887 23332 347888999999999999999999999999999888899999
Q ss_pred HHHh-------hcCCcchHHHHHHHH
Q 005642 547 SIFA-------TSGEWEKSSLIRDIM 565 (686)
Q Consensus 547 ~~~~-------~~g~~~~a~~~~~~~ 565 (686)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9998 788888666655543
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=0.00012 Score=44.05 Aligned_cols=31 Identities=45% Similarity=0.727 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGV 233 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 233 (686)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.017 Score=56.61 Aligned_cols=88 Identities=8% Similarity=0.070 Sum_probs=74.7
Q ss_pred HHHhcCChHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCc
Q 005642 482 LFARAGCLNEAVNLIEQM-PF-----EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555 (686)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 555 (686)
-..+.|.+.+|.+.|.+. .+ +|+...|.....+..+.|+.++|+.-.+++++++|....++..-+.++...++|
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999887 33 445666777777788999999999999999999999989999999999999999
Q ss_pred chHHHHHHHHHhcC
Q 005642 556 EKSSLIRDIMREKH 569 (686)
Q Consensus 556 ~~a~~~~~~~~~~~ 569 (686)
++|.+.+++..+..
T Consensus 338 e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887643
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.2 Score=52.52 Aligned_cols=229 Identities=11% Similarity=0.089 Sum_probs=151.3
Q ss_pred CCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHH
Q 005642 55 GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGKQIHSHILV 133 (686)
Q Consensus 55 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~ 133 (686)
=.+++|.++.+.- |.+..|..|.......-.++-|...|-+... +... + .+.-..++..-.+
T Consensus 677 vgledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~-----------vkrl~~i~s~~~q 739 (1189)
T KOG2041|consen 677 VGLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----L-----------VKRLRTIHSKEQQ 739 (1189)
T ss_pred hchHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh----H-----------HHHhhhhhhHHHH
Confidence 3456666665544 5567799988888777788888888766543 2211 1 1111112221111
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCC-----ChhhHHHH
Q 005642 134 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT-----SSVMWNSM 208 (686)
Q Consensus 134 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l 208 (686)
.+=+.+ --|++++|++++-++.++| .-|..+.+.|++-...++++..... -..+|+.+
T Consensus 740 ----------~aei~~--~~g~feeaek~yld~drrD-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~i 802 (1189)
T KOG2041|consen 740 ----------RAEISA--FYGEFEEAEKLYLDADRRD-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNI 802 (1189)
T ss_pred ----------hHhHhh--hhcchhHhhhhhhccchhh-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHH
Confidence 111122 2389999999999888877 3467788899999999998875432 14689999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
...++....|++|.+.|..-... ...+.++.+..++++-+.+-.. ++.+....-.+.+++.+.|.-
T Consensus 803 g~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 803 GETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchH
Confidence 99999999999999999764321 2345666666666554444333 455666677788999999999
Q ss_pred hHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchh
Q 005642 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 336 (686)
Q Consensus 289 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 336 (686)
++|.+.|-+...|. .-+..|...+++.+|.++-++..-|.+.+
T Consensus 869 ~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~t 911 (1189)
T KOG2041|consen 869 DQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQT 911 (1189)
T ss_pred HHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 99988876554433 23456777788888888877776665544
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.45 E-value=0.031 Score=54.77 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLR-----MDKF-SLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
.+..+...+.+.|++++|.++|++....-.. .+.. .|...+-++...|+...|...++....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566667777777777777766553221 1111 122233344555666666666665543
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.0047 Score=55.46 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-C-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-E-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
..+..+...+...|++++|...|++..+. ...+ + ...+..++.++.+.|++++|...+++. ...| +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 45677777888889999999999988732 2222 2 467888889999999999999998887 3455 4555666777
Q ss_pred HHHhcCC--------------hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 514 GCVAHGD--------------KGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 514 ~~~~~g~--------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
.+...|+ +++|.+.++++++.+|++ +..++..+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 7777666 466777777777777765 444444444444
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.43 E-value=0.00044 Score=53.51 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHH
Q 005642 450 CGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV-GMWSSILRGCVAHGDKGLGRKVA 528 (686)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 528 (686)
.|+++.|+.+++++.+.....|+...+..+..+|.+.|++++|..++++.+..|.. ...-.+..++.+.|++++|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57889999999998854222234556666889999999999999999885444433 44445577788999999999988
Q ss_pred HHH
Q 005642 529 ERM 531 (686)
Q Consensus 529 ~~~ 531 (686)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 764
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.43 E-value=0.00019 Score=52.97 Aligned_cols=53 Identities=15% Similarity=0.377 Sum_probs=44.7
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
...|++++|+..++++++..|++..++..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999888999999999999999999998866553
No 169
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.42 E-value=0.14 Score=49.95 Aligned_cols=289 Identities=13% Similarity=0.069 Sum_probs=182.3
Q ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH--hcCChHHHHHHHhccCC-CChhh--HHHHHH
Q 005642 105 SWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG--KCGDFNSANQVLNMMKE-PDDFC--LSALIS 179 (686)
Q Consensus 105 ~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~~~~~--~~~li~ 179 (686)
.|.+|-.++...+.|+-..+.+.-....+. +..|....-.|+.+-. -.|+.++|.+-|+.|.. |.... ...|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 455555555555556666666655443322 3445555555554433 35999999999999985 33221 222223
Q ss_pred HHHccCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcCHH--HHHHHHHHHH---cc
Q 005642 180 GYANCGKMNDARRVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDAS--TLASVLSACS---SL 250 (686)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~---~~ 250 (686)
.-.+.|+.+.|...-++.-. | -...+.+.+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-. -.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 33578888888888776543 2 35688899999999999999999998876543 344432 2223333322 12
Q ss_pred CChhhHHHHHHHHHHcCCCchHH-HHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHH----HHH
Q 005642 251 GFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA----KHI 325 (686)
Q Consensus 251 ~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~ 325 (686)
.+...|+..-.+..+. .|+.. .-..-..++.+.|++.++-.+++.+-+.++..--.++..+.+.|+.... .+-
T Consensus 243 adp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 243 ADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred CChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3456666666665553 44433 2234457788889998888888877655555544555566666664322 234
Q ss_pred HhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHHHh
Q 005642 326 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA-NISSLELGEQVFARVTII 398 (686)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~ 398 (686)
++.|+..+..+.-.+..+-...|++..|..--+.... ..|....|..+.+.-. ..|+-.++...+.+.++.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5566666777777777888888888877766665554 4677777777766654 448888887777776654
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.42 E-value=0.0037 Score=66.21 Aligned_cols=135 Identities=9% Similarity=0.107 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 005642 432 GVKPTIITFTAILSACDHC-----GLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARA--------GCLNEAVNLIE 497 (686)
Q Consensus 432 ~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 497 (686)
+.+.+...|...+.+.... +..+.|..+|++.. ...|+ ...+..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4455777777777764332 33668888888887 45674 45555544444321 12334444444
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 498 QM---P-FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 498 ~~---~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
+. . ...+...|..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.+++.....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 42 1 223556777776667778999999999999999999 577899999999999999999999998876543
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.0068 Score=64.20 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 005642 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532 (686)
Q Consensus 454 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 532 (686)
..+.+..++.........++..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444443311122335678888877777889999999999998 477888889999999999999999999999999
Q ss_pred ccCCCCch
Q 005642 533 ELDPENAC 540 (686)
Q Consensus 533 ~~~p~~~~ 540 (686)
.++|.++.
T Consensus 481 ~L~P~~pt 488 (517)
T PRK10153 481 NLRPGENT 488 (517)
T ss_pred hcCCCCch
Confidence 99998765
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.41 E-value=0.003 Score=53.92 Aligned_cols=95 Identities=7% Similarity=-0.008 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRG 514 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~ 514 (686)
...-.+...+...|++++|..+|+.+. -+.| +..-|..|.-++...|++++|+..|.... +.| |+..+..+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445556666788999999999999987 4667 67888999999999999999999999983 555 57788889999
Q ss_pred HHhcCChhHHHHHHHHHHccC
Q 005642 515 CVAHGDKGLGRKVAERMIELD 535 (686)
Q Consensus 515 ~~~~g~~~~A~~~~~~~~~~~ 535 (686)
+...|+.+.|++.|+.++..-
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998844
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0021 Score=50.65 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=77.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCV 516 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~ 516 (686)
+..+...+...|++++|...++.+.+ ..| +...+..+...+...|++++|.+.++.. ...| +...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 45566677888999999999999873 334 4577888999999999999999999886 3334 4567888888999
Q ss_pred hcCChhHHHHHHHHHHccCCC
Q 005642 517 AHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~ 537 (686)
..|+.+.|...+.+..+..|+
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999887773
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.39 E-value=0.00022 Score=42.87 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLD 364 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (686)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.37 E-value=0.00054 Score=51.34 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=51.4
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
..+.+.++++.|.+.++++++.+|+++..+...+.++...|++++|.+.++...+..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5677889999999999999999999999999999999999999999999998887543
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.0033 Score=49.67 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 415 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 415 (686)
-...|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++..--. ..+-.+|.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~--~~ie~kl~------------------- 86 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS--EDIENKLT------------------- 86 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc--hhHHHHHH-------------------
Confidence 34455556666777777777777777777 677777777777665442111 00001111
Q ss_pred hchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005642 416 KCGYDALALFNEMRNTGVKPTIITFTAILSACD 448 (686)
Q Consensus 416 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 448 (686)
..+.++++|...+++|+..+|+.++..+.
T Consensus 87 ----~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 87 ----NLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred ----HHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 34556666666667777777777766543
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.32 E-value=0.004 Score=53.80 Aligned_cols=130 Identities=14% Similarity=0.083 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---HHHH
Q 005642 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHID-PEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD---VGMW 508 (686)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~ 508 (686)
.|....-..|..+....|+..+|...|++.. .|+- -|......+.++....+++.+|...++++. ..|+ +...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal--sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL--SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh--ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3444444455556666666666666666655 2332 255555556666666666666666665551 1121 1222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
-.+...+...|..+.|+..++.++...| .+......+..+.++|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3344555566666666666666666555 33344455555556665555555443333
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.00096 Score=48.56 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=45.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 479 MVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
+...+...|++++|.+.|+++ ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677788888888888877 3455 456677788888888888888888888888888763
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0087 Score=53.54 Aligned_cols=94 Identities=14% Similarity=-0.055 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE--DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456777777777888888888888876642222 12466677777778888888888888777653 22334455555
Q ss_pred HHHH-------hcCChhHHHHHHH
Q 005642 280 DTYS-------KRGMPSDACKLFS 296 (686)
Q Consensus 280 ~~~~-------~~g~~~~A~~~~~ 296 (686)
..+. +.|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5566665554443
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.27 E-value=0.015 Score=56.98 Aligned_cols=150 Identities=14% Similarity=0.234 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHcc-CCHHHHHHHHhhcCC-----CC----hhhHHHHHHHH
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC-GKMNDARRVFDRTTD-----TS----SVMWNSMISGY 212 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~ 212 (686)
|...+..|...|++..|-+.+.. +...|... |++++|.+.|++..+ .. ...+..+...+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 44445555555665555444433 33344444 566666666654322 01 23455666677
Q ss_pred HhcCChhHHHHHHHHHHHCCCC-----cCHH-HHHHHHHHHHccCChhhHHHHHHHHHHcC--CCc--hHHHHHHHHHHH
Q 005642 213 ISNNEDTEALLLFHKMRRNGVL-----EDAS-TLASVLSACSSLGFLEHGKQVHGHACKVG--VID--DVIVASALLDTY 282 (686)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~--~~~~~~~l~~~~ 282 (686)
.+.|++++|+++|++....-.. .+.. .|...+-++...||...|...++...... +.. .......|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 7777777777777776653221 1111 22222334445566666666666665432 211 223444455555
Q ss_pred Hhc--CChhHHHHHHHhcccCCc
Q 005642 283 SKR--GMPSDACKLFSELKVYDT 303 (686)
Q Consensus 283 ~~~--g~~~~A~~~~~~~~~~~~ 303 (686)
-.. ..++.+..-|+.+.+.|.
T Consensus 246 ~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS---H
T ss_pred HhCCHHHHHHHHHHHcccCccHH
Confidence 432 224444444554444443
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.26 E-value=0.0039 Score=49.28 Aligned_cols=77 Identities=8% Similarity=0.114 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCCC-----CCchhHHHHHHHHHhCC--------ChhhHHHHHHHHHHCCCCCCHHH
Q 005642 305 LLNTMITVYSSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNG--------SPIEALDLFCNMNKLDLRMDKFS 371 (686)
Q Consensus 305 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t 371 (686)
+....|..+...+++...-.+|+.+++ |++.+|+.++.+.++.. +....+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445667777788999999999998876 66789999999877643 23456778888888888888888
Q ss_pred HHHHHHHHHc
Q 005642 372 LASVISACAN 381 (686)
Q Consensus 372 ~~~ll~~~~~ 381 (686)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888876544
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.22 E-value=0.014 Score=48.12 Aligned_cols=107 Identities=16% Similarity=0.097 Sum_probs=70.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC--chHHHHHHHHHHH
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNGVLED--ASTLASVLSACSSLGFLEHGKQVHGHACKVGVI--DDVIVASALLDTY 282 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~ 282 (686)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++.....-.. .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778888999999998888876654 345666777788888899988888888775321 0223333445567
Q ss_pred HhcCChhHHHHHHHhcccCCchhHHHHHHHH
Q 005642 283 SKRGMPSDACKLFSELKVYDTILLNTMITVY 313 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 313 (686)
...|+.++|...+-....++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888877654444333444333333
No 183
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.19 E-value=0.00023 Score=43.53 Aligned_cols=33 Identities=33% Similarity=0.650 Sum_probs=30.8
Q ss_pred HHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 528 AERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 528 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
++++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.44 Score=50.14 Aligned_cols=202 Identities=11% Similarity=0.015 Sum_probs=110.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCC-CChhhHHHHHHH----------HHccCCHHHHHHHHhhcCCCChhhH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISG----------YANCGKMNDARRVFDRTTDTSSVMW 205 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~----------~~~~g~~~~A~~~~~~~~~~~~~~~ 205 (686)
.|.+..|..|...-...-.++.|+..|-+... +.+..-..+-.. -.--|++++|+++|-.+.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 56667777777666666667777777665553 222111111111 1123677777777776666553
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 005642 206 NSMISGYISNNEDTEALLLFHKMRRNGV--LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283 (686)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 283 (686)
.|..+.+.|++-...++++.-- .+. ..-..++..+...++....++.|.+.|..--.. ...+.+|.
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly 833 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLY 833 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHH
Confidence 2445556666666655554210 000 111345666666666666667766666542211 13455555
Q ss_pred hcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHH
Q 005642 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359 (686)
Q Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (686)
+..++++-+.+-..+ +.+....-.+..++.+.|.-++|.+.+-+-..|. +.+..|...++|.+|.++-+.
T Consensus 834 ~le~f~~LE~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 834 RLELFGELEVLARTL-PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHhhhhHHHHHHhc-CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 555555544433332 3455556667777777777777777766655442 334455566666666665544
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.11 E-value=0.015 Score=50.43 Aligned_cols=107 Identities=16% Similarity=0.238 Sum_probs=88.3
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--
Q 005642 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE-- 537 (686)
Q Consensus 463 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-- 537 (686)
..++....|+...-..|..++.+.|++.||...|++.- ..-|....-.+.++....+++..|...++++.+.+|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 33344567888888889999999999999999998872 5557888888888888899999999999999998776
Q ss_pred CchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+.....++.+|...|++++|+..++.....-
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 56678888999999999999999999777643
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.10 E-value=0.016 Score=56.58 Aligned_cols=284 Identities=11% Similarity=0.046 Sum_probs=148.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCC---cCHHHHHHHHHHHHccCChhhHHHHHHHHHH--c--CC-CchHHHHHHHHHH
Q 005642 210 SGYISNNEDTEALLLFHKMRRNGVL---EDASTLASVLSACSSLGFLEHGKQVHGHACK--V--GV-IDDVIVASALLDT 281 (686)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~l~~~ 281 (686)
.-+++.|+....+.+|+..++-|.. .=+..|..|.++|.-.+++++|.+++..=+. . |- .........|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4577888888888888888886632 1233466666777777888888887643211 1 10 0111222334555
Q ss_pred HHhcCChhHHHHHHHhcc----c-----CCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC-CchhHHHHHHHHHhCCChh
Q 005642 282 YSKRGMPSDACKLFSELK----V-----YDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPI 351 (686)
Q Consensus 282 ~~~~g~~~~A~~~~~~~~----~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 351 (686)
+--.|.+++|.....+-. + ....++-.+...|...|+--.. ..| +...++.=+. ..++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~-------~~pee~g~f~~ev~-----~al~ 172 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL-------EAPEEKGAFNAEVT-----SALE 172 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC-------CChhhcccccHHHH-----HHHH
Confidence 555666766665443221 0 0122333444444443331100 000 0011111000 0122
Q ss_pred hHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHH
Q 005642 352 EALDLFCNM----NKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFN 426 (686)
Q Consensus 352 ~A~~~~~~m----~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~ 426 (686)
.|.++|.+= .+.|-. .-...|..+...|.-.|+++.|+..++.-++. |.+.=+
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i----------------------a~efGD 230 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI----------------------AQEFGD 230 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH----------------------HHHhhh
Confidence 333333321 111111 11235666667777788888888877643221 001111
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 005642 427 EMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW---QYHID-PEIEHYSCMVDLFARAGCLNEAVNLIEQMP-- 500 (686)
Q Consensus 427 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 500 (686)
+.. ....+..+..++.-.|+++.|.+.|+.... +.|-. ....+..+|...|.-..++++|+.++.+.-
T Consensus 231 rAa------eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 231 RAA------ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHH------HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 224566677777777888888887776431 11211 134455667777777778888888776541
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 501 ------FEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 501 ------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
..-....+-+|..++...|..++|+...+..++
T Consensus 305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 112345566778888888888888777766655
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.34 Score=47.88 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHH
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (686)
+..+.-+...|+...|.++-.+..-||...|...+.+++..++|++-.++... +++|+.|..++.++.+.|+..+|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 34455556677778888888888778888888888888888888877776543 5577888888888888888888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 005642 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391 (686)
Q Consensus 356 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 391 (686)
+..++ ++..-+..|.+.|++.+|.+.
T Consensus 259 yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 259 YIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 76652 123445566777777766554
No 188
>PRK15331 chaperone protein SicA; Provisional
Probab=97.10 E-value=0.0043 Score=53.24 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=78.6
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 468 HIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 468 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
|++++ .+..-....-+-..|++++|..+|+-+- ..| +..-|..|..++...+++++|+..|..+..+.++++.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44442 3333344445567899999999998873 333 56667778888888899999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHh
Q 005642 545 LSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+..|...|+.+.|+..+....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999987776
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.09 E-value=0.11 Score=49.49 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 339 SMIVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
.+..-|.+.|.+..|+.-|+.+.+. +.+........+..++...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455677888888888888888764 22333455667778888888888887766544
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.36 Score=47.77 Aligned_cols=109 Identities=10% Similarity=0.056 Sum_probs=87.4
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCC
Q 005642 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318 (686)
Q Consensus 239 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 318 (686)
+.+..+.-|...|+...|.++-.+. . -|+...|-..+.+++..+++++-..+... ..++..|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 4555667777888888888775554 2 37888999999999999999988886654 5578899999999999999
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHH
Q 005642 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359 (686)
Q Consensus 319 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (686)
..+|..+..++. +..-+..|.+.|++.+|.+.-.+
T Consensus 253 ~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999843 36677888999999998766433
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.06 E-value=0.0077 Score=58.76 Aligned_cols=131 Identities=19% Similarity=0.183 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 405 IISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSA-CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 405 ~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
.+|..++....+.+. .|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+. ...+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 356666766666655 77778888774432 123333333333 33346666788888887754 3346777778888
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 482 LFARAGCLNEAVNLIEQMP-FEADV----GMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
.+.+.++.+.|..+|++.- .-|.. ..|...+.--.+.|+.+....+.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 8888888888888888762 22332 468888887778888888888888888877764
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.00098 Score=49.05 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=24.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
..|++++|+++|+++.. ..| +......++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555552 123 4455555555555555555555555555
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.03 E-value=0.0016 Score=48.12 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCC
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG-DKGLGRKVAERMIELDP 536 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p 536 (686)
...|..++..+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456666677777777777777777666 3444 3556777777777777 57777777777777766
No 194
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.02 E-value=0.43 Score=47.62 Aligned_cols=87 Identities=11% Similarity=0.185 Sum_probs=57.5
Q ss_pred HHhccCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---chHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC
Q 005642 62 LLFDEMPR-R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND---FSWNMLISGFAKADLAALEYGKQIHSHILVNGL 136 (686)
Q Consensus 62 ~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~ 136 (686)
++=+++.+ | |+.+|-.||.-+..+|.+++..++|++|..|-. ..|..-+++-... +++...+.++.++++..+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~--~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR--KDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhh--hhHHHHHHHHHHHHhhhc
Confidence 44455553 3 677888888888888888888888888887543 3455445433322 678888888888887655
Q ss_pred CCChhHHHHHHHHHHh
Q 005642 137 DFDSVLGSSLVNLYGK 152 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~ 152 (686)
. ...|...+..-.+
T Consensus 108 ~--ldLW~lYl~YIRr 121 (660)
T COG5107 108 N--LDLWMLYLEYIRR 121 (660)
T ss_pred c--HhHHHHHHHHHHh
Confidence 4 4455555544333
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.99 E-value=0.0093 Score=60.58 Aligned_cols=113 Identities=11% Similarity=0.143 Sum_probs=82.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 005642 173 CLSALISGYANCGKMNDARRVFDRTTDT------SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246 (686)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 246 (686)
....++..+....+++.+..++.+.... -..+..++|+.|.+.|..++++.+++.=...|+-||..+++.||..
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444455555555666666666554331 2345668899999999999999999888888999999999999999
Q ss_pred HHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 005642 247 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285 (686)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 285 (686)
+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999888888877666666665555555554
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.97 E-value=0.011 Score=48.76 Aligned_cols=85 Identities=14% Similarity=0.036 Sum_probs=49.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CchhHHHHHHHHh
Q 005642 479 MVDLFARAGCLNEAVNLIEQMP---FEAD--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPE---NACAYIQLSSIFA 550 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 550 (686)
+..++-..|+.++|+.+|++.. .... ...+-.+...+...|++++|..++++..+..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445555666666666666541 1111 233445556666667777777777766666565 4444555556666
Q ss_pred hcCCcchHHHHHH
Q 005642 551 TSGEWEKSSLIRD 563 (686)
Q Consensus 551 ~~g~~~~a~~~~~ 563 (686)
..|++++|.+.+-
T Consensus 87 ~~gr~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGRPKEALEWLL 99 (120)
T ss_pred HCCCHHHHHHHHH
Confidence 6777777766543
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.96 E-value=0.023 Score=55.48 Aligned_cols=126 Identities=11% Similarity=0.148 Sum_probs=64.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhchh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005642 371 SLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCGY-DALALFNEMRNTGVKPTIITFTAILSACD 448 (686)
Q Consensus 371 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 448 (686)
+|..++..+.+.+..+.|+.+|.++.+.+ ...++.+..++++.++.... .|..+|+...+. +..+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 34455555555555666666666655332 12333344444444433322 366666665543 3335555556666666
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDPE---IEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+.|+.+.|..+|++... .+.++ ...|...++.=.+.|+.+.+.++.+++
T Consensus 82 ~~~d~~~aR~lfer~i~--~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 82 KLNDINNARALFERAIS--SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HTT-HHHHHHHHHHHCC--TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHH--hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666652 12221 235666666666666666666666555
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.96 E-value=0.0056 Score=58.58 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHH
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQMP-FEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN---ACAYIQLSS 547 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 547 (686)
|..-+..+.+.|++++|...|+... ..|+ ...+..+...+...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344455555555555541 2232 1234445555666666666666666666555543 334444455
Q ss_pred HHhhcCCcchHHHHHHHHHh
Q 005642 548 IFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~ 567 (686)
++...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666665554
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.93 E-value=0.47 Score=46.53 Aligned_cols=287 Identities=18% Similarity=0.153 Sum_probs=164.8
Q ss_pred HccCChhhHHHHHHHHHHcCCCchHHHHHHHH--HHHHhcCChhHHHHHHHhccc-CCch--hHHHHHHHHHhCCCHHHH
Q 005642 248 SSLGFLEHGKQVHGHACKVGVIDDVIVASALL--DTYSKRGMPSDACKLFSELKV-YDTI--LLNTMITVYSSCGRIEDA 322 (686)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~g~~~~A 322 (686)
...|+-..|.++-.+..+. +..|..-.-.|+ ++-.-.|++++|.+-|+.|.. |... -...|.-.-.+.|..+.|
T Consensus 95 agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 95 AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHH
Confidence 3567777777776655432 222333222222 233346888888888887762 2222 122333334556777777
Q ss_pred HHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHHH--HHHHHHHHccCChHHHHHHHHHHH
Q 005642 323 KHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSL--ASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 323 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
...-++.... -...+.+.+...+..|+++.|+++.+.-.... +.++..-- ..|+.+-. |.
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA--------------~s 239 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA--------------MS 239 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH--------------HH
Confidence 7666665442 23566677777777777777777776655432 22332111 11111100 00
Q ss_pred HhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH
Q 005642 397 IIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTII-TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475 (686)
Q Consensus 397 ~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 475 (686)
..+-.|. .|...-.+.. ...||.. .-..-..++.+.|+..++-.+++.+.+ ..|-+..
T Consensus 240 ~ldadp~----------------~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~i 298 (531)
T COG3898 240 LLDADPA----------------SARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDI 298 (531)
T ss_pred HhcCChH----------------HHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHH
Confidence 0000000 2222222222 3455543 233345678899999999999999983 3455554
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQM----PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
.... .+.+.|+. +..-+++. .++| +..+...+..+....|++..|..-.+.+....| ...+|..++.+-.
T Consensus 299 a~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIee 373 (531)
T COG3898 299 ALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEE 373 (531)
T ss_pred HHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHh
Confidence 3322 33455553 33333333 2455 466677788888999999999999999999999 5567999999886
Q ss_pred hc-CCcchHHHHHHHHHhcCCCCCCCcc
Q 005642 551 TS-GEWEKSSLIRDIMREKHVGKLPGCS 577 (686)
Q Consensus 551 ~~-g~~~~a~~~~~~~~~~~~~~~~~~~ 577 (686)
.. |+-.++..++-+..+. +.+|.++
T Consensus 374 AetGDqg~vR~wlAqav~A--PrdPaW~ 399 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKA--PRDPAWT 399 (531)
T ss_pred hccCchHHHHHHHHHHhcC--CCCCccc
Confidence 55 9999999988766542 2445544
No 200
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.86 E-value=0.61 Score=46.77 Aligned_cols=452 Identities=12% Similarity=0.088 Sum_probs=227.0
Q ss_pred HHHHHHHHHhh--ccCccchhhHHHHHHHHhCCCCCch----hhHHHHHHHHHhcCCcHHHHHHhccCCCC-ChhhHHHH
Q 005642 6 DYLARLLQSCN--THHSIHVGKQLHLHFLKKGILNSTL----PIANRLLQMYMRCGNPTDALLLFDEMPRR-NCFSWNAM 78 (686)
Q Consensus 6 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l 78 (686)
+.+.-+..++. ..++..++..++.++.+..-..+.. ...+.++++|.- .+.+.-...+....+. ....|-.|
T Consensus 5 ~~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~L 83 (549)
T PF07079_consen 5 RQYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPL 83 (549)
T ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHH
Confidence 33444444444 4478999999999998765332221 034566666653 3444444444444332 13345555
Q ss_pred HHHH--HhcCCHHHHHHHHhhCCC------C---C--------cchH-HHHHHHHHhcChhhHHHHHHHHHHHHHcCC--
Q 005642 79 IEGF--MKLGHKEKSLQLFNVMPQ------K---N--------DFSW-NMLISGFAKADLAALEYGKQIHSHILVNGL-- 136 (686)
Q Consensus 79 i~~~--~~~g~~~~A~~~~~~m~~------~---~--------~~~~-~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~-- 136 (686)
..++ -+.+.+.+|++.+..-.. + | .+.+ +.....+... |.+.+++.+++.+...=+
T Consensus 84 F~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~--g~f~EgR~iLn~i~~~llkr 161 (549)
T PF07079_consen 84 FKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIET--GRFSEGRAILNRIIERLLKR 161 (549)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhhh
Confidence 5543 477889999888765432 1 1 1111 2223333444 789999999888876544
Q ss_pred --CCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 005642 137 --DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 214 (686)
Q Consensus 137 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 214 (686)
..+..+|+.++-++++.=-++ +-+.+...=..-|--++..|.+.=+.-++... ++.. |.......++....-
T Consensus 162 E~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~~Y-~k~~-peeeL~s~imqhlfi 235 (549)
T PF07079_consen 162 ECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQRPY-EKFI-PEEELFSTIMQHLFI 235 (549)
T ss_pred hhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhhchH-HhhC-cHHHHHHHHHHHHHh
Confidence 489999999999888742221 11122211112345555555432221111110 0000 111111112211111
Q ss_pred c--CChhHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHccCChhhHHHHHHHHHHcCCCc----hHHHHHHHHHHHHhcCC
Q 005642 215 N--NEDTEALLLFHKMRRNGVLEDASTL-ASVLSACSSLGFLEHGKQVHGHACKVGVID----DVIVASALLDTYSKRGM 287 (686)
Q Consensus 215 ~--g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~l~~~~~~~g~ 287 (686)
- .+..--.+++......-+.|+.... ..+...+.. +.+++..+.+.+....+.+ =..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1112222333333333355654432 223333332 4444444444443322111 13355666777777777
Q ss_pred hhHHHHHHHhcc--cCCchh-------HHHHHHHHHh----CCCHHHHHHHHhhCCCCCchh---HHHHH---HHHHhCC
Q 005642 288 PSDACKLFSELK--VYDTIL-------LNTMITVYSS----CGRIEDAKHIFRTMPNKSLIS---WNSMI---VGLSQNG 348 (686)
Q Consensus 288 ~~~A~~~~~~~~--~~~~~~-------~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~---~~~li---~~~~~~g 348 (686)
...|.+.+.-+. +|+... -..+.+..+. .-+..+-+.+++.....|+.. -..++ .-+-+.|
T Consensus 314 T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 314 TEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcC
Confidence 777777766554 332221 1122222221 112233344444444444421 11122 2234455
Q ss_pred C-hhhHHHHHHHHHHCCCCCCH-HHHHHH----HHHHH---ccCChHHHHHHHHHHHHhCCCcchh----HHHHHHHH--
Q 005642 349 S-PIEALDLFCNMNKLDLRMDK-FSLASV----ISACA---NISSLELGEQVFARVTIIGLDSDQI----ISTSLVDF-- 413 (686)
Q Consensus 349 ~-~~~A~~~~~~m~~~g~~p~~-~t~~~l----l~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~-- 413 (686)
. -++|+++++.+.+- .|.. ..-+.+ =.+|. ....+..-.++-+.+.+.|++|-.. .-|.|.++
T Consensus 394 ~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 394 QCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 5 78899999988773 4433 222222 22222 2244555566666677788876433 44555433
Q ss_pred HHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 005642 414 YCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSC 478 (686)
Q Consensus 414 ~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 478 (686)
+...|+ ++.-.-.-+ ..+.|++.+|..+.-......++++|+.++..+ +|+..+++.
T Consensus 472 Lysqgey~kc~~ys~WL--~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWL--TKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHH--HHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHHH
Confidence 334444 332222222 246889999999988888999999999999854 566666554
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.85 E-value=0.0021 Score=42.23 Aligned_cols=42 Identities=21% Similarity=0.462 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
.+|..+...+...|++++|++.++++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999998887764
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.84 E-value=0.021 Score=51.33 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 005642 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFY 414 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 414 (686)
|.++=....+..|.+.|+..|..+|+.|++.+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvF 97 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVF 97 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhC
Confidence 44444445555555555555555555555444
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.77 E-value=0.015 Score=56.62 Aligned_cols=204 Identities=10% Similarity=0.095 Sum_probs=110.8
Q ss_pred HHHHccCCHHHHHHHHhhcCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHH--HH--CCCC-cCHHHHHHHHHH
Q 005642 179 SGYANCGKMNDARRVFDRTTDTSS-------VMWNSMISGYISNNEDTEALLLFHKM--RR--NGVL-EDASTLASVLSA 246 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~-p~~~~~~~ll~~ 246 (686)
.-+++.|+......+|+...+..+ ..|..|..+|.-.+++++|+++-..= +. .|-+ -...+-..|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 348999999999999998876443 34666667777777888888764321 11 1111 112233344455
Q ss_pred HHccCChhhHHHHHHH----HHHcCC-CchHHHHHHHHHHHHhcCChh---HHHHHHHhcccCCchhHHHHHHHHHhCCC
Q 005642 247 CSSLGFLEHGKQVHGH----ACKVGV-IDDVIVASALLDTYSKRGMPS---DACKLFSELKVYDTILLNTMITVYSSCGR 318 (686)
Q Consensus 247 ~~~~~~~~~a~~~~~~----~~~~g~-~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 318 (686)
+--.|.+++|...... ..+.|- ......+..+...|...|+-- .+.+. ..++.=+ ...
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~---------g~f~~ev-----~~a 170 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK---------GAFNAEV-----TSA 170 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc---------ccccHHH-----HHH
Confidence 5556778877755432 233331 112334555777777665421 11000 0000000 001
Q ss_pred HHHHHHHHhhCC-------CC--CchhHHHHHHHHHhCCChhhHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHccCC
Q 005642 319 IEDAKHIFRTMP-------NK--SLISWNSMIVGLSQNGSPIEALDLFCNM----NKLDLRM-DKFSLASVISACANISS 384 (686)
Q Consensus 319 ~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p-~~~t~~~ll~~~~~~~~ 384 (686)
++.|.++|.+-. +. --..|..+...|.-.|+++.|+..-+.- ++-|-+. ....+..+..++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 122333332211 11 1235666777777778888887654432 2333222 23567788888888899
Q ss_pred hHHHHHHHHHHH
Q 005642 385 LELGEQVFARVT 396 (686)
Q Consensus 385 ~~~a~~~~~~~~ 396 (686)
++.|.+.|+...
T Consensus 251 fe~A~ehYK~tl 262 (639)
T KOG1130|consen 251 FELAIEHYKLTL 262 (639)
T ss_pred cHhHHHHHHHHH
Confidence 999998888543
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.74 E-value=0.27 Score=46.71 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=33.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHccCChhhHHHHHHHH
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGHA 263 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 263 (686)
.+.+-|.+.|.+..|+.-++.+++. +.+........+..++...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3455566677777777777776653 22233445555666666666666666555443
No 205
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.73 E-value=0.018 Score=58.60 Aligned_cols=110 Identities=10% Similarity=0.101 Sum_probs=74.4
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC-C-----CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 005642 308 TMITVYSSCGRIEDAKHIFRTMPN-K-----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 381 (686)
Q Consensus 308 ~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 381 (686)
.+++.+....+++.+..++.+... | -+.|..+++..|...|..++++.+++.=...|+-||..|++.++..+.+
T Consensus 71 ~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~ 150 (429)
T PF10037_consen 71 IFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLK 150 (429)
T ss_pred HHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhh
Confidence 334444444444445444444432 1 2345568888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 005642 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417 (686)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 417 (686)
.|++..|.++...|...+.-.+..++.--+..+.+.
T Consensus 151 ~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 151 KGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888777766665555555444444443
No 206
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.012 Score=57.61 Aligned_cols=230 Identities=13% Similarity=0.015 Sum_probs=141.7
Q ss_pred CCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH----
Q 005642 435 PTIITFTAILS-ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGM---- 507 (686)
Q Consensus 435 p~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~---- 507 (686)
|.-.+|..+-. .+.-.|++++|...--...+ +.+ +.+....-..++.-.++.+.|...|++. ...|+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk---ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILK---LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHh---cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 33344444433 45567888888887776662 333 3444444444556678889999988887 45555322
Q ss_pred ---------HHHHHHHHHhcCChhHHHHHHHHHHccCCCCch----hHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCC
Q 005642 508 ---------WSSILRGCVAHGDKGLGRKVAERMIELDPENAC----AYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574 (686)
Q Consensus 508 ---------~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 574 (686)
|..-..-..+.|++..|.+.|.+++.++|++.. .|...+.+..+.|+..+|+.-.+...+ .++
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~ 318 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDS 318 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCH
Confidence 222233446889999999999999999998543 477788889999999999999885554 667
Q ss_pred CccceeeccccceeehhhhhhhhcHHH-Hhhcc-cc----cchhhhcCCCCCCCCccccccceecccccc----hhHHHH
Q 005642 575 GCSWADGIAFNCWFLDTMFLQLANFDE-IKQHQ-SA----DFCDYIHGFDQARLPLSSKRSFVLGYLLST----LSLKVV 644 (686)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 644 (686)
...+.++...+|...-+.|.++.+-++ ..+.. +. +|.+..-++ ....-..+..++|+.+.. ....-.
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL---kkSkRkd~ykilGi~~~as~~eikkayr 395 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL---KKSKRKDWYKILGISRNASDDEIKKAYR 395 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH---HHhhhhhHHHHhhhhhhcccchhhhHHH
Confidence 777778887888887777777776665 22221 11 122111111 111112333455555544 222222
Q ss_pred HHhhhccccccCch-hHHHHHHHHHHhHHHHH
Q 005642 645 YSNLCSSLVVPTRN-ELAYLLIRMVYGNILTI 675 (686)
Q Consensus 645 ~~~~~~~~~~~~~n-~~a~~~~~~~~~~~~~~ 675 (686)
--.|......++-| ..|+..++-| |+-.||
T Consensus 396 k~AL~~Hpd~~agsq~eaE~kFkev-geAy~i 426 (486)
T KOG0550|consen 396 KLALVHHPDKNAGSQKEAEAKFKEV-GEAYTI 426 (486)
T ss_pred HHHHHhCCCcCcchhHHHHHHHHHH-HHHHHH
Confidence 33344445566666 7788777765 555554
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.70 E-value=0.034 Score=53.29 Aligned_cols=103 Identities=11% Similarity=0.059 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD----VGMWSSI 511 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l 511 (686)
..|...+....+.|++++|...|+.+.+.+.-.+ ....+..++.+|...|++++|...|+.+. ..|+ ...+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555667999999999999985432211 14678899999999999999999999882 2232 4556667
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
+..+...|+.+.|...++++++..|++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 77888999999999999999999997653
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.69 E-value=0.0067 Score=60.97 Aligned_cols=65 Identities=15% Similarity=0.035 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch---hHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC---AYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+...|+.+..+|...|++++|+..++++++++|++.. +|.+++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556677777777777777777777777777776653 3677777777777777777777766653
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.65 E-value=0.0067 Score=45.28 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=47.8
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 005642 481 DLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 543 (686)
..|.+.+++++|.+.++.+ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677788888888888877 3445 4566777778888888888888888888888887665443
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.64 E-value=0.031 Score=50.22 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=87.8
Q ss_pred HHHhhC--CCCCchhHHHHHHHHHhC-----CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 324 HIFRTM--PNKSLISWNSMIVGLSQN-----GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 324 ~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
..|+.. ..++-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|++.+-+. .+-
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~fv---------- 103 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KFV---------- 103 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Ccc----------
Confidence 344444 345667788888777644 66777778889999999999999999999987652 221
Q ss_pred HhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCC
Q 005642 397 IIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV-KEGQKWFDAMKWQYHIDP 471 (686)
Q Consensus 397 ~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~p 471 (686)
....+.+...-|-+..+-|++++++|...|+-||..++..++..+.+.+.. .+..++.-.|.+-.+..|
T Consensus 104 ------p~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP 173 (228)
T PF06239_consen 104 ------PRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINP 173 (228)
T ss_pred ------cccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCC
Confidence 111222222234444446888899999999999999999999988877643 345555555544334444
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.60 E-value=0.0033 Score=47.71 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcc----CCC---CchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIEL----DPE---NACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+++.+...+...|++++|+..+++++++ .++ ...++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777788888887777777762 222 245677788888888888888888776654
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.56 E-value=0.31 Score=50.71 Aligned_cols=155 Identities=10% Similarity=0.061 Sum_probs=75.4
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC--------
Q 005642 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD-------- 199 (686)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 199 (686)
++.+.++|-.|+.... ...++-.|++.+|-++|.+-...+ .-+..|.....++.|.+++.....
T Consensus 623 L~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~en-----RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHEN-----RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred HHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchh-----hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 3456777777776543 345666788999999998765432 233444444455555554432211
Q ss_pred ------CChhhHHHHHHHHHhcCChhHHHHHHHH------HHHCC---CCcCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 005642 200 ------TSSVMWNSMISGYISNNEDTEALLLFHK------MRRNG---VLEDASTLASVLSACSSLGFLEHGKQVHGHAC 264 (686)
Q Consensus 200 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 264 (686)
.++.-=.+....+...|+.++|+.+.-+ +.+-+ -..+..+...+...+.+...+..|.++|..+-
T Consensus 695 KRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 695 KRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred HHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 1111111233444455666666554311 11100 11223334334444444455555555555443
Q ss_pred HcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 265 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 265 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
.. ..++++....+++++|..+-++..
T Consensus 775 D~---------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 775 DL---------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred cH---------HHHhhheeecccchHhHhhhhhCc
Confidence 21 234555555566666655555444
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.47 E-value=0.34 Score=50.46 Aligned_cols=41 Identities=7% Similarity=0.096 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHH
Q 005642 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261 (686)
Q Consensus 218 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 261 (686)
+-+.+.-+++|+++|-.|+... +...|+-.|++.+|.++|.
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH
Confidence 4455556677777776677644 3445566677777776664
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.15 Score=47.10 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 283 (686)
.-+.++..+.-.|.+.-.+..+++.++..-+.++.....+.+.-.+.||.+.|...++...+..-..+....+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~--- 255 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL--- 255 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH---
Confidence 34455555555666666666666666654444555555566666666666666666665544322222222211111
Q ss_pred hcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHH
Q 005642 284 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNM 360 (686)
Q Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (686)
-.....|.-++++..|...+.+++. .+++.-|.-..++.-.|+..+|++..+.|
T Consensus 256 -----------------------~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 256 -----------------------MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred -----------------------hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111223334444444444444443 23444455444555556666677776666
Q ss_pred HHC
Q 005642 361 NKL 363 (686)
Q Consensus 361 ~~~ 363 (686)
.+.
T Consensus 313 ~~~ 315 (366)
T KOG2796|consen 313 VQQ 315 (366)
T ss_pred hcc
Confidence 654
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.12 Score=49.10 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CHHH
Q 005642 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG---CLNEAVNLIEQM-PFEA-DVGM 507 (686)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~ 507 (686)
+-|...|..|...|...|+.+.|...|....+ +.| +++.+..+..++..+. ...++.++|+++ ...| ++..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 33788999999999999999999999999884 444 6777888887776543 467889999998 4566 5666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
...|...+...|++.+|...++.|++..|.+.+ +..++
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHH
Confidence 777788899999999999999999998887655 44443
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.23 Score=45.85 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
+.++..+.-.+.+.-.+.++++.++...+.++.....+.+.-.+.|+.+.|...|++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444444455555555555555554434444444455555555555555555555443
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.30 E-value=0.065 Score=46.51 Aligned_cols=107 Identities=16% Similarity=0.262 Sum_probs=71.2
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHID--PEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 524 (686)
....++.+.+.+.++++...+.-+ |+... ..-.......++.. -......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 345677788888877776332211 12111 11112222222222 134566677888899999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 525 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
...+++++..+|-+...|..++.+|...|+..+|.++++++.+
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887753
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.23 E-value=0.58 Score=47.69 Aligned_cols=181 Identities=11% Similarity=0.124 Sum_probs=104.3
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC---CcchhHHHHHHHHHHhchhHH
Q 005642 345 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL---DSDQIISTSLVDFYCKCGYDA 421 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~A 421 (686)
-+..++..-++.-++..+ +.||-.+.-+++ +-.......++++++++..+.|- ..+.... . .
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~-----~---~---- 243 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQ-----H---H---- 243 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhhhhh-----c---c----
Confidence 344555555555555555 345543333222 22234456777788877665431 1110000 0 0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 005642 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP- 500 (686)
Q Consensus 422 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 500 (686)
-...+........|-..+-..+...+.+.|+.++|++.++++.+.........+...|+.++...+.+.++..++.+..
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0011111112222223344556667788999999999999998544322345678899999999999999999999884
Q ss_pred -CCCC--HHHHHHHHHHHHhcCCh---------------hHHHHHHHHHHccCCCCch
Q 005642 501 -FEAD--VGMWSSILRGCVAHGDK---------------GLGRKVAERMIELDPENAC 540 (686)
Q Consensus 501 -~~p~--~~~~~~li~~~~~~g~~---------------~~A~~~~~~~~~~~p~~~~ 540 (686)
.-|. ...|+..+-..+..++. ..|.+++.++.+.+|.-+.
T Consensus 324 i~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred ccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 2243 33466655444444431 2356788999998885443
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.16 E-value=0.28 Score=45.33 Aligned_cols=60 Identities=15% Similarity=0.031 Sum_probs=31.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNGV--LEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 266 (686)
.....+.+.|++.+|++.|+++...-. +--......+..++.+.|+++.|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334445566666666666666655311 111223444555566666666666666666554
No 220
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=2.9 Score=44.91 Aligned_cols=131 Identities=12% Similarity=0.052 Sum_probs=72.7
Q ss_pred HCCCCcCHHHHHH-----HHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh--hHHH-HHHHhccc-
Q 005642 230 RNGVLEDASTLAS-----VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP--SDAC-KLFSELKV- 300 (686)
Q Consensus 230 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--~~A~-~~~~~~~~- 300 (686)
.-|++.+..-|.. ++.-+...+.+..|.++-..+...-... ..++......+.+..+. +++. .+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466666555544 3445556677777777766553321111 45566666666665332 1222 22233333
Q ss_pred -CCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--------CchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 301 -YDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--------SLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 301 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
-+..+|....+-....|+.+-|..+++.=+.. +..-+..-+.-....|+.+-...++-.+.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 34567777777777888888888887754431 22234444555556666666655555444
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.84 E-value=1.8 Score=43.41 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
+--.+.+++.++.-.|+.++|.+.++++..+.|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 45556788899999999999999999999887743
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.79 E-value=0.016 Score=43.95 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
.++..+...+...|++++|++.++++++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555666666666666666666554
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.74 E-value=0.16 Score=42.40 Aligned_cols=99 Identities=18% Similarity=0.148 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
|..++..++-++++.|+++....+.+..- |+.++...-. .- --......|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~--------------~~--~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKE--------------GD--YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcccc--------------Cc--cCCCCCCCCCHHHHHHHHHHH
Confidence 34566677777777777777766665432 2221110000 00 011234678899999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFA 484 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (686)
+..|++..|+++.+...+.++++-+..+|..|+.-..
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999888887778888888776443
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=95.73 E-value=0.18 Score=51.11 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
|+.....+..+..-.++.+.|...++++..++|+.+.+|...++++.-.|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444555555555555555555555555555555555555555555555543
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.15 Score=50.31 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=84.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcC----CCC---------ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHH
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYH----IDP---------EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFE-ADVGMWS 509 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~----~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 509 (686)
..+.+.|++..|...|++.+.-.. .++ -..++..+.-++.+.+++.+|++..++. ... +++-..-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 356777888888888777653222 111 1234666777778888888888877776 333 3566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchH-HHHHHHHHhc
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS-SLIRDIMREK 568 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 568 (686)
.-..+|...|+++.|+..|+++++++|+|-.+-..++..-.+..++.+. .++|..|..+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6777888888888888888888888888877777777666665555544 5567777653
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=95.61 E-value=1.6 Score=44.47 Aligned_cols=140 Identities=11% Similarity=0.126 Sum_probs=99.0
Q ss_pred HHHHHHHHHHH-CCCCCCH-HHHHHHHHHHh---------ccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC
Q 005642 420 DALALFNEMRN-TGVKPTI-ITFTAILSACD---------HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG 487 (686)
Q Consensus 420 ~A~~~~~~m~~-~~~~p~~-~~~~~ll~~~~---------~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 487 (686)
.|+.+|.+... ....|+. ..|..+..++. ......+|.+.-+... .+.| |+.....++.++.-.|
T Consensus 276 ~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 276 RAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhhc
Confidence 78888888872 2345554 33433333222 1234556777777666 4566 7888888988888899
Q ss_pred ChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH--HHHhhcCCcchHHHHHH
Q 005642 488 CLNEAVNLIEQMP-FEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS--SIFATSGEWEKSSLIRD 563 (686)
Q Consensus 488 ~~~~A~~~~~~~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~ 563 (686)
+++.|...|++.. +.|+ ...|......+.-.|+.++|.+.++++++++|....+-..-. ..|+..+ .++|.+++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 9999999999984 7776 556777777778899999999999999999998655444333 3466555 777777654
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.044 Score=54.00 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=76.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--------C---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 479 MVDLFARAGCLNEAVNLIEQMP--------F---------EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~--------~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
-...|.+.|++..|...|++.. . ..-..++.++.-++.+.+++..|++...+.++++|+|.-+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 3456778888888888887741 1 1123567788888999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 542 YIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+..-+.+|...|+++.|+..|+++++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999999999999999999988873
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.60 E-value=1.3 Score=40.88 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=19.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLN 490 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 490 (686)
..|.+.|.+..|..-++.+++.+.-.+ .......++.+|.+.|..+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 344555555555555555553322211 1233444445555555444
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.54 E-value=1.9 Score=43.32 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=18.7
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 379 (686)
.|+.++|++++..+......++..||..+...|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 566666666666654444555555555555443
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=95.52 E-value=0.15 Score=43.97 Aligned_cols=92 Identities=12% Similarity=0.014 Sum_probs=73.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-F-EADVGMWSSILRGCVAHG 519 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~li~~~~~~g 519 (686)
...-+-..|++++|..+|+-+.. ..| +..-+..|..++...+.+++|+..|.... . .-|+...-....++...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 34455688999999999999872 445 67788899999999999999999998762 2 224444556788999999
Q ss_pred ChhHHHHHHHHHHccCCCC
Q 005642 520 DKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~ 538 (686)
+.+.|+..|+.+++ .|.+
T Consensus 120 ~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 120 KAAKARQCFELVNE-RTED 137 (165)
T ss_pred CHHHHHHHHHHHHh-Ccch
Confidence 99999999999997 5654
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.49 E-value=0.52 Score=38.65 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=55.3
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 487 GCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 487 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
|+......-+-.+. .+.......++.+..+|+-+.-.+++..+...+..++.....++.+|.+.|+..++.+++++..
T Consensus 70 ~NlKrVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 70 GNLKRVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp S-THHHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34444444433332 2345556677888999999998899988886454577889999999999999999999999999
Q ss_pred hcCCC
Q 005642 567 EKHVG 571 (686)
Q Consensus 567 ~~~~~ 571 (686)
++|++
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 98874
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.37 E-value=0.19 Score=47.12 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=68.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM----PFEA-DVGMWSSIL 512 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~li 512 (686)
.|+.-+. +.+.|++..|...|...++.+--.+ ....+..|+..+...|++++|...|..+ +..| -+..+--+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555443 4456778888888888875332222 3556667888888888888888777766 2222 245666677
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
....+.|+.++|...+++..+..|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77777888888888888888877766543
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.20 E-value=0.15 Score=41.61 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=64.5
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC----chhHHHHHHHHhhcCC
Q 005642 481 DLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN----ACAYIQLSSIFATSGE 554 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 554 (686)
-++...|+.+.|++.|.+. .+-| ....||.-..+++-+|+.++|+.-+++++++..+. -.+|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566778888888888776 2333 56678888888888888888888888888854322 1346667777888888
Q ss_pred cchHHHHHHHHHhcC
Q 005642 555 WEKSSLIRDIMREKH 569 (686)
Q Consensus 555 ~~~a~~~~~~~~~~~ 569 (686)
-+.|+.=|....+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887776655
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=1.3 Score=42.21 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=89.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCC
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWS---SILRGCVAHGD 520 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~---~li~~~~~~g~ 520 (686)
......|++.+|...|+.... ..| +...-..++.+|...|+.+.|..++..++..-....+. .-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~---~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ---AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 356678999999999999873 234 56778889999999999999999999997443333232 33445555555
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..+... +++-...+|++...-..++..+...|+.++|.+.+=.+.++
T Consensus 219 ~~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 219 TPEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 554443 33444569999999999999999999999999976656554
No 235
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.10 E-value=3.6 Score=40.18 Aligned_cols=261 Identities=13% Similarity=0.049 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH-hc------ccCC--chhHHHHHHHHHhCCCHHHHHHHHhhCCC-C------C-chh
Q 005642 274 VASALLDTYSKRGMPSDACKLFS-EL------KVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPN-K------S-LIS 336 (686)
Q Consensus 274 ~~~~l~~~~~~~g~~~~A~~~~~-~~------~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~-~~~ 336 (686)
++..+.++.++.|.++++...-- .| .+.+ -.+|..+.+++-+.-++.+++.+-..-.. | + ...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44455556666666655543211 11 0111 12344555555555555555544433221 1 1 123
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLR-----MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 411 (686)
...|..++...+.++++++.|+...+--.. ..-..+..+-+.|.+..++++|.-+...+.+
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~-------------- 190 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAE-------------- 190 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHH--------------
Confidence 334555666666777777777766542111 1223555666666666666666555543322
Q ss_pred HHHHhchhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCCC-ChhHHHHHHHHHHh
Q 005642 412 DFYCKCGYDALALFNEMRNTGVKP--TIITFTAILSACDHCGLVKEGQKWFDAMKW---QYHIDP-EIEHYSCMVDLFAR 485 (686)
Q Consensus 412 ~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~p-~~~~~~~l~~~~~~ 485 (686)
+.....-.++.. .....-.+.-++...|....|.+..++..+ ..|-.| -.....++.+.|..
T Consensus 191 ------------lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 191 ------------LVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred ------------HHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 222211111000 011222344467778888888888887653 233333 24556788899999
Q ss_pred cCChHHHHHHHHhC-C----CCC---CHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHcc----CCC--CchhHHHHH
Q 005642 486 AGCLNEAVNLIEQM-P----FEA---DVGMWSSILRGCVAHGDK-----GLGRKVAERMIEL----DPE--NACAYIQLS 546 (686)
Q Consensus 486 ~g~~~~A~~~~~~~-~----~~p---~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~----~p~--~~~~~~~l~ 546 (686)
.|+.+.|+.-|+.. . ... .+.....+...+...+-. =.|+++-++.+++ .-+ --.....++
T Consensus 259 ~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla 338 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLA 338 (518)
T ss_pred cccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999888765 1 110 122223333332222211 2355655665552 221 123466788
Q ss_pred HHHhhcCCcchHHH
Q 005642 547 SIFATSGEWEKSSL 560 (686)
Q Consensus 547 ~~~~~~g~~~~a~~ 560 (686)
.+|...|.-++-..
T Consensus 339 ~iYrs~gl~d~~~~ 352 (518)
T KOG1941|consen 339 SIYRSKGLQDELRA 352 (518)
T ss_pred HHHHhccchhHHHH
Confidence 88877776655444
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.01 E-value=0.17 Score=51.32 Aligned_cols=63 Identities=6% Similarity=-0.010 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADV----GMWSSILRGCVAHGDKGLGRKVAERMIEL 534 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 534 (686)
+...+..+..+|.+.|++++|+..|++. .+.|+. ..|.++..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777664 455653 24666777777777777777777777765
No 237
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=6.9 Score=42.23 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhc-ChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005642 76 NAMIEGFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKA-DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151 (686)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~ll~~~~~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~ 151 (686)
..+|.-+...+.+..|+++-..+..|. ...|...-+-..+. ...+-+.+..+-+.+... . -+...|..+..--.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHH
Confidence 345666666777777777776666554 23333333333322 122333333333333221 2 23334555555555
Q ss_pred hcCChHHHHHHHhccC
Q 005642 152 KCGDFNSANQVLNMMK 167 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~ 167 (686)
.+|+++-|..+++.=+
T Consensus 519 ~~GR~~LA~kLle~E~ 534 (829)
T KOG2280|consen 519 QEGRFELARKLLELEP 534 (829)
T ss_pred hcCcHHHHHHHHhcCC
Confidence 6788888877776543
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.84 E-value=1.4 Score=37.72 Aligned_cols=123 Identities=12% Similarity=0.257 Sum_probs=62.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 005642 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY-DALALFNEMRNTGVKPTIITFTAILSACDHCGL 452 (686)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 452 (686)
.++..+...+.......+++.+.+.+ ..+....+.++..|++... +.++.+.. ..+......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34445555556666666666666555 3555566666666666544 33333331 1122333345556666666
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005642 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA-GCLNEAVNLIEQMPFEADVGMWSSILRGCV 516 (686)
Q Consensus 453 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~li~~~~ 516 (686)
++++..++.++. . +...++.+... ++++.|.+++.+.. +...|..++..+.
T Consensus 85 ~~~~~~l~~k~~----~------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDG----N------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhc----C------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 666666665432 0 11122222222 56666666666532 4445555554443
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.82 E-value=0.19 Score=47.11 Aligned_cols=93 Identities=15% Similarity=0.212 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CchhHHH
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQMP-------FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE---NACAYIQ 544 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 544 (686)
.|+.-++.| +.|++.+|...|.... ..|+..- -|..++...|++++|...|..+..-.|+ -+.++.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 566666544 5678999999998771 3344444 4889999999999999999999997766 4567888
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 545 LSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
++.+..+.|+.++|..+++++.++-+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999987543
No 240
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.80 E-value=4.4 Score=39.56 Aligned_cols=62 Identities=8% Similarity=-0.081 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhCCChh---hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 336 SWNSMIVGLSQNGSPI---EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
+...++.+|...+..+ +|..+++.+... ..-....+..-+..+.+.++.+.+.+++..|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4556667777666544 455555556443 2222444445566666677788888888877765
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.76 E-value=0.86 Score=38.48 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=31.8
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
...+.|++++|.+.|+.+...+-..| ....-..++.+|.+.|++++|...+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34455666666666666664433333 3445556666666666666666666554
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.68 E-value=2.7 Score=47.61 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHhCCCHHHHHHHHhhCCCCCchh---HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 005642 312 VYSSCGRIEDAKHIFRTMPNKSLIS---WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 388 (686)
+|...|++.+|+.+-.++..+-... -..|+.-+...+++-+|-++..+.... ..-.+..+++...+++|
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEA 1045 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHH
Confidence 4446788888888888776642222 256777778888888888777766542 12233445555666666
Q ss_pred HHHHH
Q 005642 389 EQVFA 393 (686)
Q Consensus 389 ~~~~~ 393 (686)
.++-.
T Consensus 1046 lrva~ 1050 (1265)
T KOG1920|consen 1046 LRVAS 1050 (1265)
T ss_pred HHHHH
Confidence 65544
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.54 E-value=0.43 Score=39.78 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~ 515 (686)
|..++..++.++++.|+.+....+.+..- |+.++...- .+. +-..-+..|+..+..+++.++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 45678888999999999999888887643 555442210 000 111113667777777777777
Q ss_pred HhcCChhHHHHHHHHHHccCC--CCchhHHHHHH
Q 005642 516 VAHGDKGLGRKVAERMIELDP--ENACAYIQLSS 547 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~ 547 (686)
+..|++..|.++.+...+..| -....|..|..
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777778877777777776443 22345665554
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.37 E-value=0.077 Score=32.31 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
..|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777775
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.34 E-value=1.1 Score=37.75 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQMP----FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
+-.-.....+.|++++|.+.|+.+. ..| ....--.++.++-+.++++.|...+++.++++|.++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3334445567899999999999983 222 2445566889999999999999999999999998654
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.34 E-value=1.7 Score=45.27 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=97.0
Q ss_pred HHHHhcCChhHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 210 SGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
....-.++++++.+....-. -..++ ..-...++..+.+.|..+.|.++-. |+. .-.+...++|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCH
Confidence 34445677777766664111 11122 3345667777778888888877642 222 234556678888
Q ss_pred hHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 005642 289 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 368 (686)
Q Consensus 289 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 368 (686)
+.|.+..++.. +...|..|.....++|+++-|++.|.+..+ |..++-.|.-.|+.+.-.++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~---- 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG---- 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 88887766544 566888888888888888888888888764 5667777888888877777777666654
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHH
Q 005642 369 KFSLASVISACANISSLELGEQVFAR 394 (686)
Q Consensus 369 ~~t~~~ll~~~~~~~~~~~a~~~~~~ 394 (686)
-++....++.-.|+.++..+++..
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 255566666677888887777654
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.26 E-value=0.43 Score=41.29 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHH-----cCCCchHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-----VGVIDDVIV 274 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 274 (686)
+...++..+...|++++|+.+.+.+... -+-|...+..+|.++...|+...|.+.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445556666677777777777777664 234566677777777777777777777666533 366666554
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.25 E-value=0.12 Score=31.39 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666666666666666666666666653
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.10 E-value=1.5 Score=41.11 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=76.0
Q ss_pred HHhhCC--CCCchhHHHHHHHHHhC-----CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 325 IFRTMP--NKSLISWNSMIVGLSQN-----GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 325 ~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
.|..+. ++|-.+|-.++..+... +..+-.-..++.|.+-|+.-|..+|..|+..+-+..-.
T Consensus 56 ~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi------------ 123 (406)
T KOG3941|consen 56 QFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI------------ 123 (406)
T ss_pred hhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc------------
Confidence 344444 35556677776666543 44555556677788888888888888888766543311
Q ss_pred hCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHH
Q 005642 398 IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV-KEGQKWFDAMK 464 (686)
Q Consensus 398 ~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~ 464 (686)
|. .++....-.|-+..+=+++++++|...|+.||..+-..|+.++.+.+-. .+..++.-.|-
T Consensus 124 ----P~-nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 124 ----PQ-NVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ----cH-HHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11 1122222233333335788889999999999999888899888877643 23444444443
No 250
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.01 E-value=3.9 Score=35.83 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=60.7
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC
Q 005642 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 301 (686)
Q Consensus 222 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 301 (686)
+++++.+.+.+++|+...+..++..+.+.|.+....+ ++..++-+|.......+-.+. +....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455555667777777777777777777777654333 334444333332222221111 1222222222222222
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHH
Q 005642 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357 (686)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (686)
=...+..++..+...|++-+|.++......-+......++.+..+.++...=..+|
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 12233444455555566666665555543333333344444444444443333333
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=5.3 Score=36.90 Aligned_cols=113 Identities=11% Similarity=0.046 Sum_probs=73.9
Q ss_pred cCCHHHHHHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHh
Q 005642 450 CGLVKEGQKWFDAMKWQYHI----DPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-------FEADV-GMWSSILRGCVA 517 (686)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~li~~~~~ 517 (686)
.-++++|+++|++...-... ..-.+.+......+.+...+++|-..+.+-. .-|+. ..+-..|-.+.-
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 44566666666665421111 1124556667778888888888877766552 22232 235555556666
Q ss_pred cCChhHHHHHHHHHHc----cCCCCchhHHHHHHHHhhcCCcchHHHHHH
Q 005642 518 HGDKGLGRKVAERMIE----LDPENACAYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 518 ~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
..|+..|+..++.--+ ..|++..+...|+.+| ..|+.+++..++.
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 7789999999988655 4577777888888877 7788888877654
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=1.7 Score=41.82 Aligned_cols=146 Identities=13% Similarity=0.034 Sum_probs=99.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc---CCCchHHHHHHHHHHHHhcCChhH
Q 005642 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV---GVIDDVIVASALLDTYSKRGMPSD 290 (686)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~ 290 (686)
-.|+..+|-..++++++. .+.|...+...-.+|...|+...-+..++++... ++|....+...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 357777777778887765 5667777777777788888888777777777654 233333444555566677888888
Q ss_pred HHHHHHhccc---CCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--Cc-----hhHHHHHHHHHhCCChhhHHHHHHHH
Q 005642 291 ACKLFSELKV---YDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SL-----ISWNSMIVGLSQNGSPIEALDLFCNM 360 (686)
Q Consensus 291 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-----~~~~~li~~~~~~g~~~~A~~~~~~m 360 (686)
|++.-++..+ -|..+..++...+--.|+..++.++..+-... .. .-|-.....+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 8888887663 35556677778888888888888888776541 11 12333444556668888888888653
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=0.62 Score=44.72 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHH----HHHHHhcCChHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCM----VDLFARAGCLNEAVNL 495 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~~~ 495 (686)
+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+...|..+ .-++...|-+++|.+.
T Consensus 121 ~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~ 197 (491)
T KOG2610|consen 121 EAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYDDAEKQ 197 (491)
T ss_pred HHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccchhHHHH
Confidence 555555565543 233555555555566666666666666666552 223444333322 2233456666666666
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC----chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 496 IEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN----ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 496 ~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
-++. .+.| |.-.-.+....+...|+..++.++..+-...-... ...|=..+-.+.+.+.|+.|.++++.=.-+.
T Consensus 198 A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~ 277 (491)
T KOG2610|consen 198 ADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKR 277 (491)
T ss_pred HHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 6655 2333 34444455555556666666665554433321110 0112222333444566666666665444344
Q ss_pred CCCCCC
Q 005642 570 VGKLPG 575 (686)
Q Consensus 570 ~~~~~~ 575 (686)
++++.+
T Consensus 278 l~k~Da 283 (491)
T KOG2610|consen 278 LEKDDA 283 (491)
T ss_pred hhccch
Confidence 444444
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=4.4 Score=38.73 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=5.6
Q ss_pred HHHHhCCChhhHHH
Q 005642 342 VGLSQNGSPIEALD 355 (686)
Q Consensus 342 ~~~~~~g~~~~A~~ 355 (686)
..+...|+.++|++
T Consensus 244 ~~~~~~g~~e~Ale 257 (304)
T COG3118 244 DQLHLVGRNEAALE 257 (304)
T ss_pred HHHHHcCCHHHHHH
Confidence 33333444444433
No 255
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.69 E-value=0.26 Score=43.54 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=63.3
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 482 LFARAGCLNEAVNLIEQMP-FEA------DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~-~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
-+.+.|++++|..-|...- .-| ....|..-..++.+.+..+.|+.-..++++++|.+..+...-+.+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3456677777777766651 111 134455556667788888888888888888888877777777888888888
Q ss_pred cchHHHHHHHHHhc
Q 005642 555 WEKSSLIRDIMREK 568 (686)
Q Consensus 555 ~~~a~~~~~~~~~~ 568 (686)
+++|++=++++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888773
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.67 E-value=6 Score=36.78 Aligned_cols=120 Identities=22% Similarity=0.236 Sum_probs=90.0
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhc
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP----EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD--VGMWSSILRGCVAH 518 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~li~~~~~~ 518 (686)
.+...|+++.|...+.+... ..| ....+......+...++.+++...+.+.. ..++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 67788999999999998862 233 34445555555677889999998888873 3333 56677788888888
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 519 GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++.+.|...+....+..|.....+..+...+...++++++...+.+..+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999988875566777777777777788888888776654
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=5.8 Score=36.66 Aligned_cols=81 Identities=11% Similarity=0.113 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCCCC--hhhHHHHHHHHHhc
Q 005642 141 VLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTS--SVMWNSMISGYISN 215 (686)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~ 215 (686)
..|.....+|....+++.|...+.+..+ .+...|. ....++.|.-+.+++.+.+ +..|+--...|...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4566666777777888887776666542 2222222 1223344444444444432 23455566677777
Q ss_pred CChhHHHHHHHHH
Q 005642 216 NEDTEALLLFHKM 228 (686)
Q Consensus 216 g~~~~A~~~~~~m 228 (686)
|.++-|-..+++.
T Consensus 105 GspdtAAmaleKA 117 (308)
T KOG1585|consen 105 GSPDTAAMALEKA 117 (308)
T ss_pred CCcchHHHHHHHH
Confidence 7777666665554
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.47 E-value=6.7 Score=36.75 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=40.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 478 CMVDLFARAGCLNEAVNLIEQMP-FEA----DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
.+.+.|.+.|.+..|..-++++. .-| ....+-.+..+|...|-.++|.....-+....|++.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 45667777777777777777662 111 234456667778888888887776666655556553
No 259
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.37 E-value=10 Score=38.46 Aligned_cols=77 Identities=9% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCCCCh---hhHHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD---FCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISG 211 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 211 (686)
+.|+..|-.|+.-|...|..++.++++++|..|-. ..|...+++=....++...+.+|.+... -+...|..-+.-
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~Y 118 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEY 118 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHH
Confidence 55778899999999999999999999999987654 3677777777777888888888887654 345666665554
Q ss_pred HH
Q 005642 212 YI 213 (686)
Q Consensus 212 ~~ 213 (686)
-.
T Consensus 119 IR 120 (660)
T COG5107 119 IR 120 (660)
T ss_pred HH
Confidence 33
No 260
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.25 E-value=15 Score=40.06 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=46.5
Q ss_pred HHHHhcCChHHHHHHHhccCC--C---ChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 005642 148 NLYGKCGDFNSANQVLNMMKE--P---DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221 (686)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 221 (686)
+.+.+.+.+++|+...+.... + -...+..+|..+.-.|++++|-...-+|...+..-|.--+..+...++....
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 445566677777777666553 1 2235666677777777777777777666666666666666666666555443
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.03 E-value=2.8 Score=44.34 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=77.2
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHhccCC--CChhhHHHHH-HHHHccCCHHHHHHHHhhcCCC-------ChhhHHH
Q 005642 142 LGSSLVNLYGK----CGDFNSANQVLNMMKE--PDDFCLSALI-SGYANCGKMNDARRVFDRTTDT-------SSVMWNS 207 (686)
Q Consensus 142 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ 207 (686)
.|+..+..++. ..+.+.|.++++.+.+ |+...|...- ..+...|++++|++.|++.... ....+--
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E 310 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE 310 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH
Confidence 35555544443 3456777777777775 6655554333 4456678888888888754431 2234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HccCCh-------hhHHHHHHHHHH
Q 005642 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC-SSLGFL-------EHGKQVHGHACK 265 (686)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~-------~~a~~~~~~~~~ 265 (686)
+.-.+.-.++|++|.+.|..+.+.. .-+..+|.-+..+| ...++. ++|.+++.++..
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6666777889999999999988753 33444555555444 355666 778888776644
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.95 E-value=0.76 Score=37.61 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=68.7
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC-CH---HHHHHHHHHHHhc
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEA-DV---GMWSSILRGCVAH 518 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p-~~---~~~~~li~~~~~~ 518 (686)
+.+..|+.+.|++.|.+.. .+-| ....|+.-..++.-+|+.++|++-+++.- ..| .. ..|..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 5678899999999999987 4556 78899999999999999999999888762 112 22 2244444568889
Q ss_pred CChhHHHHHHHHHHccCCC
Q 005642 519 GDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~ 537 (686)
|+.+.|..-|+.+-++...
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 9999998888877775543
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.93 E-value=3 Score=43.46 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 005642 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219 (686)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 219 (686)
..-.+.++..+-+.|..+.|+.+.+. | ..-.....+.|+++.|.++.++.. +...|..|.....++|+++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D---~-----~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD---P-----DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----H-----HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC---h-----HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence 44577888888888999999887643 1 345566778899999988887766 4668999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 296 (686)
-|.+.|++... |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+++.
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 99999987643 45666677778888888888777776652 2334445555677777766665
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.75 E-value=7.6 Score=41.13 Aligned_cols=115 Identities=12% Similarity=0.036 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCChh
Q 005642 450 CGLVKEGQKWFDAMKWQYHIDPEIEHY-SCMVDLFARAGCLNEAVNLIEQMP-FE-----ADVGMWSSILRGCVAHGDKG 522 (686)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~li~~~~~~g~~~ 522 (686)
..+.+.|.++++.+.+ .-|+...| -.-.+.+...|++++|++.|++.. .+ .....+--+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 5678889999999883 24654444 445566778899999999999752 11 12233445566677889999
Q ss_pred HHHHHHHHHHccCCCCchhHHHH-HHHHhhcCCc-------chHHHHHHHHHh
Q 005642 523 LGRKVAERMIELDPENACAYIQL-SSIFATSGEW-------EKSSLIRDIMRE 567 (686)
Q Consensus 523 ~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~~a~~~~~~~~~ 567 (686)
+|...+.++.+...-+...|.-+ +-.+...|+. ++|.++++++-.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999998665444444443 3445667888 777777776654
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.53 E-value=1.2 Score=41.78 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=63.5
Q ss_pred CChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccC----------------ChhhHHH
Q 005642 200 TSSVMWNSMISGYISN-----NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG----------------FLEHGKQ 258 (686)
Q Consensus 200 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~~ 258 (686)
+|-.+|-+.+..+... +..+=....++.|.+-|+.-|..+|..|++.+-+.. +-+-+.+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 4555666666655443 455656667788888888889999988888764322 2244678
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 259 VHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 259 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
++++|...|+.||..+-..|++++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 888888888888888888888888776653
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.36 E-value=1.1 Score=43.68 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=131.8
Q ss_pred HHHhCCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCcc---hhHHHHHHHHHH
Q 005642 343 GLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTII--GLDSD---QIISTSLVDFYC 415 (686)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~ 415 (686)
-+....+.++|+..+.+-..+- ..--..++..+..+.++.|.+++++..---.++. ..... ...|..|..++.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788889988887766531 1112345667777778888777766543322111 11111 112222332222
Q ss_pred hchh--HHHHHHHHHHH-CCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CC--ChhHHHHHHHHHHh
Q 005642 416 KCGY--DALALFNEMRN-TGVKP---TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI--DP--EIEHYSCMVDLFAR 485 (686)
Q Consensus 416 ~~~~--~A~~~~~~m~~-~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~ 485 (686)
+.-+ +++.+-..-.. .|..| ......++..++...+.++++++.|+...+-..- +| ...++-.|...|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 2221 23322222111 12222 1234445666777788899999999987632221 12 34678889999999
Q ss_pred cCChHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccC------CCCchhHHHHHH
Q 005642 486 AGCLNEAVNLIEQM-------PFEAD-----VGMWSSILRGCVAHGDKGLGRKVAERMIELD------PENACAYIQLSS 547 (686)
Q Consensus 486 ~g~~~~A~~~~~~~-------~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 547 (686)
..++++|.-+..+. .+..- ....-.+.-+++..|..-.|.+..+++.++. |-.......++.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 99999887666554 22211 1223345566888899999988888887732 334445667889
Q ss_pred HHhhcCCcchHHHHHHHHH
Q 005642 548 IFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~ 566 (686)
+|...|+.|.|..-++...
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 9999999999888887654
No 267
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.31 E-value=4.5 Score=39.61 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=82.9
Q ss_pred chHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--cC----ChHHHHHHHhccCCCChhhHHHH
Q 005642 104 FSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK--CG----DFNSANQVLNMMKEPDDFCLSAL 177 (686)
Q Consensus 104 ~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~~~~~l 177 (686)
.++.+++..-.......++....+++.+.+.|+..+..+|-+....... .. ....|.++++.|++....
T Consensus 61 ~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f----- 135 (297)
T PF13170_consen 61 FILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF----- 135 (297)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc-----
Confidence 3444444443332345667778889999999998888777664443333 11 245566677777641100
Q ss_pred HHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC----hhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHccC
Q 005642 178 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE----DTEALLLFHKMRRNGVLEDA--STLASVLSACSSLG 251 (686)
Q Consensus 178 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~ 251 (686)
+..++-.++..|+.. ..++ .+.+..+|+.+.+.|+..+. .....++..+....
T Consensus 136 -------------------LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~ 194 (297)
T PF13170_consen 136 -------------------LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDD 194 (297)
T ss_pred -------------------ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccc
Confidence 000112233333222 2222 24566677777776765533 23444444433222
Q ss_pred C--hhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 252 F--LEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 252 ~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
. ...+..+++.+.+.|+++....|..+.-..
T Consensus 195 ~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 195 QEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred hHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 2 346777888888888877777665544433
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.76 E-value=0.28 Score=30.35 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.2
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 541 AYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998754
No 269
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.38 E-value=25 Score=38.79 Aligned_cols=46 Identities=7% Similarity=0.108 Sum_probs=27.4
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHH
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 354 (686)
++..+.+..+.+.+..+.+...+.++..|..++..+++.+..+...
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHH
Confidence 4455555666666666666666666666666666666665444333
No 270
>PRK09687 putative lyase; Provisional
Probab=91.27 E-value=15 Score=35.73 Aligned_cols=221 Identities=13% Similarity=0.099 Sum_probs=105.8
Q ss_pred CCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCH----HHHHHHHhhC--CCCCcchHHHHH
Q 005642 37 LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK----EKSLQLFNVM--PQKNDFSWNMLI 110 (686)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m--~~~~~~~~~~ll 110 (686)
.++.. +....+..+...|..+-...+..-...+|...-..-+.++...|+. ++++..+..+ ..++...-...+
T Consensus 34 d~d~~-vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 34 DHNSL-KRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred CCCHH-HHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 44554 6666677777777644434333333456666667777777777763 4566666655 235544444444
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccC-CHHH
Q 005642 111 SGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG-KMND 189 (686)
Q Consensus 111 ~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 189 (686)
.++...+.+.........+.+...-..++..+-...+.++++.|+.+....+..-+..+|...-...+.++.+.+ +.+.
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 444433111111111122222222223355555566666666665333333333333444444444444444432 1223
Q ss_pred HHHHHh-hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 005642 190 ARRVFD-RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265 (686)
Q Consensus 190 A~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 265 (686)
+...+. .+..++..+....+.++.+.|+ ..|+..+-+..+.+. .....+.++...|+. ++...+..+.+
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 333333 3334555556666666666655 345555544444321 122344555555553 34555555444
No 271
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.17 E-value=7.7 Score=32.13 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 269 (686)
.....-+..+..+|+-+.-.++++++.+. -.+++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455677778888888888888887653 4678888888888999999999999998888888753
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.17 E-value=0.38 Score=29.09 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666666
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.11 E-value=5 Score=34.94 Aligned_cols=128 Identities=13% Similarity=0.038 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHH---HHH-
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMW---SSI- 511 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~---~~l- 511 (686)
..|..-+. +++.+..++|+.-|..+.+ .|...- +-....+.......|+...|...|+++. ..|.+... ..|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34444332 3456667777777777663 343331 2222333445566777777777777763 22221111 111
Q ss_pred -HHHHHhcCChhHHHHHHHHHHc-cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 512 -LRGCVAHGDKGLGRKVAERMIE-LDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 512 -i~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
...+..+|.++......+.+-. -+|-....-..|+-+-++.|++.+|.++|..+.+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1224456666665544443332 2333444556677777777777777777777664
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.41 E-value=18 Score=35.20 Aligned_cols=157 Identities=11% Similarity=0.026 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhchh-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 005642 406 ISTSLVDFYCKCGY-----DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480 (686)
Q Consensus 406 ~~~~li~~~~~~~~-----~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 480 (686)
+...|+.+|...+. +|..+++.+...... .+.++..-+..+.+.++.+++.+.+.+|+.. +.-....+..++
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHHH
Confidence 45556666666555 677777777544322 2444545556666688899999999999853 321223333333
Q ss_pred HHH---HhcCChHHHHHHHHhC---CCCCCHH-HHHH-HHH---HHHhcCC------hhHHHHHHHHHHc--cCCCCchh
Q 005642 481 DLF---ARAGCLNEAVNLIEQM---PFEADVG-MWSS-ILR---GCVAHGD------KGLGRKVAERMIE--LDPENACA 541 (686)
Q Consensus 481 ~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~~-li~---~~~~~g~------~~~A~~~~~~~~~--~~p~~~~~ 541 (686)
..+ ... ....|...++.+ ...|... .... ++. .....++ ++....++....+ ..|-++.+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 332 234555555544 2333332 1111 111 1122222 3333333332222 22323222
Q ss_pred H---HHH----HHHHhhcCCcchHHHHHHHHH
Q 005642 542 Y---IQL----SSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 542 ~---~~l----~~~~~~~g~~~~a~~~~~~~~ 566 (686)
- .++ +..+.+.++|++|.++++...
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 222 334667889999999988544
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.28 E-value=11 Score=32.58 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=71.5
Q ss_pred HHHHHHHH---HHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHH
Q 005642 438 ITFTAILS---ACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMWSSIL 512 (686)
Q Consensus 438 ~~~~~ll~---~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~li 512 (686)
.+.+.|+. .-.+.++.+.+..++..+. -+.|. ...-..-+..+.+.|++.+|+.+|+++. -.|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 33444444 3456789999999999887 46674 3444444556788999999999999985 334444445555
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHH
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
..|....+-..=.....++++..| ++. -..+...+....+...|...
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~-d~~-a~~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGA-DPD-ARALVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCC-ChH-HHHHHHHHHHhccccchhhh
Confidence 555544333333444555666555 333 33455555555555555543
No 276
>PRK09687 putative lyase; Provisional
Probab=90.24 E-value=19 Score=35.08 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=8.8
Q ss_pred CCchhHHHHHHHHHhCCC
Q 005642 332 KSLISWNSMIVGLSQNGS 349 (686)
Q Consensus 332 ~~~~~~~~li~~~~~~g~ 349 (686)
++...-...+.++.+.++
T Consensus 204 ~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD 221 (280)
T ss_pred CChHHHHHHHHHHHccCC
Confidence 444444445555555444
No 277
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.06 E-value=11 Score=32.10 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=46.6
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCH
Q 005642 108 MLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 187 (686)
Q Consensus 108 ~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 187 (686)
.++..+... +........++.+.+.+. .+...++.++..|++. +.....+.++. ..+.......+..|.+.+.+
T Consensus 12 ~vv~~~~~~--~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~-~~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 12 EVVELFEKR--NLLEELIPYLESALKLNS-ENPALQTKLIELYAKY-DPQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHhC--CcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH-CHHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 344444433 345566666666666653 5667788888888775 34444455542 23334444555556665555
Q ss_pred HHHHHHHhhc
Q 005642 188 NDARRVFDRT 197 (686)
Q Consensus 188 ~~A~~~~~~~ 197 (686)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555443
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.95 E-value=6.1 Score=34.42 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=36.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHH-HHHHHHH--HHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 212 YISNNEDTEALLLFHKMRRNGVLEDAS-TLASVLS--ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
..+.|+...|+..|++.-...-.|-.. -...|-. .+...|.++......+.+-..+.+.-...-..|.-+-.+.|++
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence 344555555555555554432222211 1111111 1234444554444444443333333333334444444455555
Q ss_pred hHHHHHHHhc
Q 005642 289 SDACKLFSEL 298 (686)
Q Consensus 289 ~~A~~~~~~~ 298 (686)
..|.+.|..+
T Consensus 184 a~A~~~F~qi 193 (221)
T COG4649 184 AKAKSWFVQI 193 (221)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.87 E-value=13 Score=32.65 Aligned_cols=133 Identities=16% Similarity=0.114 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHcc--CCHHHHHHHHhhcCCCChh
Q 005642 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC--GKMNDARRVFDRTTDTSSV 203 (686)
Q Consensus 126 ~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~ 203 (686)
+....+.+.+++|+...+..+++.+.+.|++..-..++.--.=+|.......+-.+... .-..-|.+++.++ ..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL----~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL----GT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh----hh
Confidence 34445567889999999999999999999998888887665545544444333222221 1134455555554 33
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 266 (686)
.+..++..+...|++-+|+++.+.....+ .++. ..++.+..+.+|...--.+++...+.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57778888999999999999988753321 2222 33566666666665555555555443
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.80 E-value=1.5 Score=41.99 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 505 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..++..++..+...|+.+.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445667888888999999999999999999999999999999999999999999999988876
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.79 E-value=1.3 Score=28.81 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRN 231 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (686)
+|..+...|.+.|++++|+++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666777777777777777777664
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.67 E-value=0.55 Score=29.00 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
+|..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778888888888888888888554
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.12 E-value=0.65 Score=27.95 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..+..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999887643
No 284
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.09 E-value=17 Score=33.02 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=48.3
Q ss_pred HHhcCCcHHHHHHhccCC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-cchHHHHHHHHHhcChhhHHHHHH
Q 005642 51 YMRCGNPTDALLLFDEMP--RR-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLISGFAKADLAALEYGKQ 126 (686)
Q Consensus 51 ~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~ll~~~~~~~~~~~~~a~~ 126 (686)
|-..|-..-|+--|.+.. .| -+..||-|.--+...|+++.|.+.|+...+-| ...|..+-++..----+++..|.+
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 333444455555554443 34 34678888888888899999999988887733 344555544443222245555554
Q ss_pred HHHHHHH
Q 005642 127 IHSHILV 133 (686)
Q Consensus 127 i~~~~~~ 133 (686)
-+...-+
T Consensus 155 d~~~fYQ 161 (297)
T COG4785 155 DLLAFYQ 161 (297)
T ss_pred HHHHHHh
Confidence 4444333
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.57 E-value=20 Score=33.05 Aligned_cols=201 Identities=17% Similarity=0.168 Sum_probs=132.3
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHhhCCC-----CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005642 303 TILLNTMITVYSSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 377 (686)
Q Consensus 303 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 377 (686)
...+......+...+.+..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45666777778888888888777776542 2334566666677777777888888877776433331 11222222
Q ss_pred -HHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005642 378 -ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456 (686)
Q Consensus 378 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 456 (686)
.+...|+++.+...+...... .|. .......+......+...++.+.+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL--DPE-----------------------------LNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCC-----------------------------ccchHHHHHHhhhHHHHhcCHHHH
Confidence 566777777777777766431 110 001122233333336677899999
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 457 QKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 457 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...+..... .... ....+..+...+...++++.|...+.... ..|+ ...+..+...+...+..+.+...+.+...
T Consensus 187 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 187 LELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998873 2223 46778888888999999999999988873 4454 44555555555577789999999999999
Q ss_pred cCCC
Q 005642 534 LDPE 537 (686)
Q Consensus 534 ~~p~ 537 (686)
..|.
T Consensus 265 ~~~~ 268 (291)
T COG0457 265 LDPD 268 (291)
T ss_pred hCcc
Confidence 8886
No 286
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.57 E-value=37 Score=36.06 Aligned_cols=123 Identities=10% Similarity=-0.006 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILR 513 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~ 513 (686)
+..+|...+..-...|+.+...-.|+...- ....-...|--.+.-....|+.+-|..++.... ..|+......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 446788888888899999999999988761 122235667777777777799998888887762 2233222222222
Q ss_pred -HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 514 -GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 514 -~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
.+-..|++..|..+++++.+-.|.....-..-+....+.|+.+.+..
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 23457899999999999998778776666666777888899988883
No 287
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.34 E-value=23 Score=33.38 Aligned_cols=178 Identities=12% Similarity=0.033 Sum_probs=84.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-C-CcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNG-V-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 284 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 284 (686)
.=+..-.+.|++++|.+.|+.+.++. . +-...+...++-++.+.++++.|....++..+.-+.....-|...+.+++.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 33444556778888888888777642 1 113445555566666777777777777777765332222233333333332
Q ss_pred c-------CChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchh-H-HHHHHHHHhCCChhhHHH
Q 005642 285 R-------GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-W-NSMIVGLSQNGSPIEALD 355 (686)
Q Consensus 285 ~-------g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~li~~~~~~g~~~~A~~ 355 (686)
. .+...+...|..+. .++.-|=.+.=...|...+..+. |... + -.+..-|.+.|.+..|..
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~--------~~i~ryPnS~Ya~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFK--------ELVQRYPNSRYAPDAKARIVKLN--DALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred hccCCccccCHHHHHHHHHHHH--------HHHHHCCCCcchhhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHHHHH
Confidence 1 12222222222221 01110000000011111100000 0001 1 124456777777777777
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 356 LFCNMNKLDLRMDK---FSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 356 ~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
-+++|.+. .+-+. ..+-.+..+|...|-.++|.+.-.-+
T Consensus 189 R~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 189 RFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 77777765 22222 33445566666777666666554443
No 288
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.13 E-value=8.2 Score=34.54 Aligned_cols=101 Identities=9% Similarity=-0.001 Sum_probs=73.5
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDPE-----IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAH 518 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~ 518 (686)
-+...|++++|..-|...... .++. ...|..-..++.+.+.++.|++-..+. .+.|. ...+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 356789999999999998842 2222 345666667888999999999887766 45553 33344445678888
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 519 GDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
..+++|+.-|+++++.+|....+-...+.+
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999765554444443
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.12 E-value=2.9 Score=36.14 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=23.7
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 485 RAGCLNEAVNLIEQMP-FEADVGMWSS-ILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 485 ~~g~~~~A~~~~~~~~-~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
+.++.+++..+++.+. ..|....... -...+...|++.+|+++++.+.+-.|..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 3445555555555552 3343222211 1122344555555555555554444433
No 290
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.03 E-value=9.1 Score=29.89 Aligned_cols=82 Identities=11% Similarity=0.117 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHH
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 355 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (686)
+.+.+.+...++.+++..+.+ +..+.+.|++++|..+.+.+..||...|.++-. .+.|..+++..
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIR-------------lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIR-------------LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHH-------------HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHH
Confidence 344555555555555555544 456778888888888888888888888877644 35666666666
Q ss_pred HHHHHHHCCCCCCHHHHH
Q 005642 356 LFCNMNKLDLRMDKFSLA 373 (686)
Q Consensus 356 ~~~~m~~~g~~p~~~t~~ 373 (686)
-+..|..+| .|...+|.
T Consensus 90 rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 666676664 44444443
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.94 E-value=33 Score=34.75 Aligned_cols=115 Identities=10% Similarity=0.013 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCCC---C-C-----
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP---EIEHYSCMVDLFARAGCLNEAVNLIEQMPF---E-A----- 503 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-p----- 503 (686)
...+|..++..+.+.|.++.|...+..+.. .+..+ .+.....-...+-..|+..+|+..++.... . +
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 456788888999999999999999998873 22111 344555566777788888888887765410 0 0
Q ss_pred --------------------C-------HHHHHHHHHHHHhc------CChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 504 --------------------D-------VGMWSSILRGCVAH------GDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 504 --------------------~-------~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
+ ...+..+..-+... ++.+++...|+++.+..|....+|..++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0 01122222222233 66777888888888888877777777776654
Q ss_pred h
Q 005642 551 T 551 (686)
Q Consensus 551 ~ 551 (686)
+
T Consensus 304 ~ 304 (352)
T PF02259_consen 304 K 304 (352)
T ss_pred H
Confidence 4
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.93 E-value=2.6 Score=35.76 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=44.4
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
...++.+++..++..+.-+.|+.+..-..-++++...|+|++|.++++.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 357888888888888888888888877778888888899999999888777644
No 293
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.90 E-value=59 Score=37.65 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=43.6
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchH
Q 005642 481 DLFARAGCLNEAVNLIEQMPFEADVGM--WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKS 558 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 558 (686)
.+|..+|++.+|..+-.++...-|... -..|+.-+..+++.-+|-++..+... +| ......|++...|++|
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~------~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-DP------EEAVALLCKAKEWEEA 1045 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-CH------HHHHHHHhhHhHHHHH
Confidence 345556677777777766643333222 25566667777777777666666553 22 1233355566667777
Q ss_pred HHHHH
Q 005642 559 SLIRD 563 (686)
Q Consensus 559 ~~~~~ 563 (686)
.++..
T Consensus 1046 lrva~ 1050 (1265)
T KOG1920|consen 1046 LRVAS 1050 (1265)
T ss_pred HHHHH
Confidence 66544
No 294
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.88 E-value=1.9 Score=41.56 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=69.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCh
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FE-ADVGMWSSILRGCVAHGDK 521 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~li~~~~~~g~~ 521 (686)
.-|.+.|.+++|+.+|.... .+.| ++.++..-..+|.+..++..|..-..... +. .-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 35788999999999999876 5667 88888888999999988887776655542 11 0123355555555566889
Q ss_pred hHHHHHHHHHHccCCCCch
Q 005642 522 GLGRKVAERMIELDPENAC 540 (686)
Q Consensus 522 ~~A~~~~~~~~~~~p~~~~ 540 (686)
++|.+-++..++++|++..
T Consensus 182 ~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHhHHHHHhhCcccHH
Confidence 9999999999999998644
No 295
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.57 E-value=21 Score=32.06 Aligned_cols=90 Identities=12% Similarity=0.027 Sum_probs=54.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 005642 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMPFEA-DVGMWSSILRGCVAH 518 (686)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~li~~~~~~ 518 (686)
...+...|++++|..-++... +.+.| ...--.|.......|.+++|+..++...-+. .......-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l---~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQAL---AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 345667788888887777655 11112 1122345556667788888888777664211 122233445667777
Q ss_pred CChhHHHHHHHHHHccCC
Q 005642 519 GDKGLGRKVAERMIELDP 536 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p 536 (686)
|+.++|+..|+++++..+
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 888888888888777654
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.46 E-value=0.98 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+|..++.+|...|++++|...+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468999999999999999999999888743
No 297
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.40 E-value=20 Score=39.43 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=36.1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHhhc---CCCChhhHHHHHHHHHhcCCh-------hHHHHHHHHHHHC
Q 005642 170 DDFCLSALISGYANCGKMNDARRVFDRT---TDTSSVMWNSMISGYISNNED-------TEALLLFHKMRRN 231 (686)
Q Consensus 170 ~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~ 231 (686)
+....-.+|-.|.|+|++++|.++..+. .+.....+-..+..|+...+- +....-|++..+.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3344556777788888888888888332 223345666677777665321 3445556655544
No 298
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.29 E-value=53 Score=36.44 Aligned_cols=179 Identities=12% Similarity=0.101 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCCCChh---hHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDF---CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 219 (686)
...-++.+++...++.|..+.+.-..+... ......+-+-+.|++++|...|-+-..--.. ..+|.-|....+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHH
Confidence 344556666767777777776654432111 2233344566788888888777654432111 12455666667777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
+-..+++.+.+.|+.-.. .-..|+.+|.+.++.++-.++.+... .| ..-|. ...+..+.+.+-.++|..+-...
T Consensus 415 nLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDV---ETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeH---HHHHHHHHHhChHHHHHHHHHHh
Confidence 777888888888765433 33568888888888887777665543 22 11122 23445555556666665554433
Q ss_pred ccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC
Q 005642 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 332 (686)
Q Consensus 299 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 332 (686)
.. .. ..+--.+-..+++++|.+.+..++-+
T Consensus 490 ~~-he---~vl~ille~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 490 KK-HE---WVLDILLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred cc-CH---HHHHHHHHHhcCHHHHHHHHhcCCHH
Confidence 22 11 12233345577888888888888753
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.14 E-value=30 Score=33.96 Aligned_cols=130 Identities=10% Similarity=0.157 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--c----CChHHHHHHHHHHHHhCCC---cchhHHHHHHHHHHhchh--
Q 005642 351 IEALDLFCNMNKLDLRMDKFSLASVISACAN--I----SSLELGEQVFARVTIIGLD---SDQIISTSLVDFYCKCGY-- 419 (686)
Q Consensus 351 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~-- 419 (686)
++.+.+++.|.+.|++-+..+|......... . .....+..+|+.|.+.-.- ++-..+..|+..-...-+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l 158 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHH
Confidence 3455778888888888887776653333222 1 2345666777777664321 223333333333111111
Q ss_pred --HHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCC--HHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 420 --DALALFNEMRNTGVKPTI--ITFTAILSACDHCGL--VKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 420 --~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
.+..+|+.+.+.|+..+- .....++..+..... ..++.++++.+. +.++++....|..++-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHH
Confidence 555666666666654432 222223322222111 345666666666 3466666555554443
No 300
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.10 E-value=54 Score=36.35 Aligned_cols=310 Identities=7% Similarity=-0.041 Sum_probs=142.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChh
Q 005642 211 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
-..+.|++..+.++...+...-+ ..-..|..+..... ...+++...+ +.+.. .+.....-......+.+.++++
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~F---l~~~~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNF---IRANPTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHH---HHHCCCCchHHHHHHHHHHHHHHccCHH
Confidence 34567888888777776642211 11222322222111 1234433333 33332 2223334455555666778888
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 005642 290 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP---NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366 (686)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 366 (686)
.... |..-.+.+...-.....+....|+.++|......+= ...+..++.++..+.+.|...... ++.+|...-..
T Consensus 117 ~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~ 194 (644)
T PRK11619 117 GLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKA 194 (644)
T ss_pred HHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHC
Confidence 7777 332224455555667778888888777766555542 234677888888888777665443 33333221111
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHH---------hCCCcchhHHHHHHHHHHhc---hh-HHHHHHHHHHHCC-
Q 005642 367 MDKFSLASVISACANISSLELGEQVFARVTI---------IGLDSDQIISTSLVDFYCKC---GY-DALALFNEMRNTG- 432 (686)
Q Consensus 367 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~li~~~~~~---~~-~A~~~~~~m~~~~- 432 (686)
.+......+..... .+.-..+.... .+.+ ..++++...-..++.++.+. +. .|..++.......
T Consensus 195 ~~~~lA~~l~~~l~-~~~~~~a~a~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~ 272 (644)
T PRK11619 195 GNTGLVTYLAKQLP-ADYQTIASALI-KLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQK 272 (644)
T ss_pred CCHHHHHHHHHhcC-hhHHHHHHHHH-HHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence 22222222222221 11000111111 1110 11112221111122222221 11 6666666653332
Q ss_pred CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHH
Q 005642 433 VKPTI--ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMW 508 (686)
Q Consensus 433 ~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~ 508 (686)
+.+.. ..+..+.......+..+++...++... ....+......-+..-.+.++++.+...+..|+ ..-...-.
T Consensus 273 ~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~---~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~ 349 (644)
T PRK11619 273 LNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI---MRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 349 (644)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc---cccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhH
Confidence 22222 223333322333222445555555433 111244444445555557777777777777774 11122223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMI 532 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~ 532 (686)
--+..++...|+.++|...|+++.
T Consensus 350 YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 350 YWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334555556777777777777764
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.01 E-value=10 Score=33.99 Aligned_cols=95 Identities=15% Similarity=0.070 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHccCChhhHHHHHHHHHHcCCC---chH----H
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA--STLASVLSACSSLGFLEHGKQVHGHACKVGVI---DDV----I 273 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~~----~ 273 (686)
..+..+...|.+.|+.++|++.|.++++....|.. ..+..+++.+...+++..+.....++...--. .+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35777788888888888888888888776544443 34566777777777887777776665543211 111 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 274 VASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 274 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+|..| .+...+++..|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 12221 2234566776666665443
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.85 E-value=1.4 Score=42.55 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=74.8
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch
Q 005642 480 VDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 557 (686)
+.-|.++|.+++|++.|... ...| +++++..-..+|.+...+..|+.-...++.++-....+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45678999999999999876 4667 888888889999999999999999999998887777778888888888888888
Q ss_pred HHHHHHHHHhc
Q 005642 558 SSLIRDIMREK 568 (686)
Q Consensus 558 a~~~~~~~~~~ 568 (686)
|.+=++...+.
T Consensus 184 AKkD~E~vL~L 194 (536)
T KOG4648|consen 184 AKKDCETVLAL 194 (536)
T ss_pred HHHhHHHHHhh
Confidence 88877766653
No 303
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.56 E-value=27 Score=32.32 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=37.0
Q ss_pred HHHHHhcCChHHHHHHHHhCC---CCCCHHHHH-----HHHHHH-HhcCChhHHHHHHHHHHccCCCCch
Q 005642 480 VDLFARAGCLNEAVNLIEQMP---FEADVGMWS-----SILRGC-VAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~-----~li~~~-~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.+.-...+++.+|+++|++.. ...+..-|. .-...| ....|.-.+...+++..+++|.-..
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 333456788889999988872 222222221 111222 2347778888889999999997433
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.50 E-value=1.5 Score=37.69 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=24.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHH
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 261 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 261 (686)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444445555555555555544333344444455555555544444444433
No 305
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.44 E-value=4.8 Score=38.63 Aligned_cols=72 Identities=14% Similarity=0.321 Sum_probs=44.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCcCHHHHHHHH
Q 005642 173 CLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRR-----NGVLEDASTLASVL 244 (686)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 244 (686)
++..++..+...|+++.+.+.++++.. -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 445556666666777777776666554 2455677777777777777777777776654 35555555443333
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.87 E-value=0.77 Score=27.92 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=14.7
Q ss_pred CC-ChhHHHHHHHHHHhcCChHHHH
Q 005642 470 DP-EIEHYSCMVDLFARAGCLNEAV 493 (686)
Q Consensus 470 ~p-~~~~~~~l~~~~~~~g~~~~A~ 493 (686)
.| +...|..+..+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34 4666666666666666666654
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.83 E-value=1.1e+02 Score=38.61 Aligned_cols=307 Identities=8% Similarity=0.015 Sum_probs=155.2
Q ss_pred HHHHHccCChhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHhcCChhHHHHHHHh-cccCCchhHHHHHHHHHhCCCHH
Q 005642 244 LSACSSLGFLEHGKQVHGHACKVG--VIDDVIVASALLDTYSKRGMPSDACKLFSE-LKVYDTILLNTMITVYSSCGRIE 320 (686)
Q Consensus 244 l~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 320 (686)
..+-.+.+.+..|...++.-.... -......+..+...|..-+++|...-+... ...+ ....-|-.....|+++
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHH
Confidence 334445667777777776621100 011233444455577777777776666552 2222 2233445566778888
Q ss_pred HHHHHHhhCCCCC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCChHHHHHHHHHHH
Q 005642 321 DAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV-ISACANISSLELGEQVFARVT 396 (686)
Q Consensus 321 ~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~ 396 (686)
.|...|+.+...+ +.+++-++......|.++..+...+-.... ..+....++.+ +.+--+.++++.....+.
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 8888888887633 346776666666677777666654444332 22333333322 233345666666555544
Q ss_pred HhCCCcchhHHHH--HHHHHHhchh----HHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 005642 397 IIGLDSDQIISTS--LVDFYCKCGY----DALALFNEMRNT--------GVKPT-IITFTAILSACDHCGLVKEGQKWFD 461 (686)
Q Consensus 397 ~~~~~~~~~~~~~--li~~~~~~~~----~A~~~~~~m~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (686)
+. +...|.+ +.....+... .-.+.++.+.+. +..-+ ...|..++....-.. +-.
T Consensus 1543 ~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-------l~~ 1611 (2382)
T KOG0890|consen 1543 DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-------LEN 1611 (2382)
T ss_pred cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-------HHH
Confidence 11 1112221 1222211111 111222222211 11100 012333322221111 000
Q ss_pred HHHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhHHHH
Q 005642 462 AMKWQYHIDPE------IEHYSCMVDLFARAGCLNEAVNLIEQM----PFEAD-----VGMWSSILRGCVAHGDKGLGRK 526 (686)
Q Consensus 462 ~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~li~~~~~~g~~~~A~~ 526 (686)
......+..++ ..-|..-+..-....+..+-+-.+++. ...|+ ..+|-...+.++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 01111223332 112222222111122222222222222 12222 5678899999999999999999
Q ss_pred HHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 527 VAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 527 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
.+-++.+..+ +.++...+..++..|+-..|..++++..+...
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9988888764 45789999999999999999999998886543
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.46 E-value=10 Score=34.26 Aligned_cols=80 Identities=11% Similarity=0.026 Sum_probs=52.0
Q ss_pred HHHhchh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCh
Q 005642 413 FYCKCGY-DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHI--DPEIEHYSCMVDLFARAGCL 489 (686)
Q Consensus 413 ~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~ 489 (686)
.+.+.|+ .|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+...- .+|++.+..|+..+.+.|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3445454 67777777776665556666666665555 56677777777776543222 35677777888888777777
Q ss_pred HHHH
Q 005642 490 NEAV 493 (686)
Q Consensus 490 ~~A~ 493 (686)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.75 E-value=2 Score=27.16 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
++.+...|...|++++|+.+++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34444444444444444444444433
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.72 E-value=1.7 Score=25.79 Aligned_cols=25 Identities=8% Similarity=0.208 Sum_probs=12.3
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 543 IQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..++.++.+.|++++|.++++++.+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444445555555555555554444
No 311
>PRK12798 chemotaxis protein; Reviewed
Probab=84.50 E-value=50 Score=33.62 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=79.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI-EHYSCMVDLFARAG---CLNEAVNLIEQMPFEADVGMWSSILRGC 515 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~li~~~ 515 (686)
...-+....+.|+.+++..+-......+...|-. ..+..+...+.+.+ ..+.-..++..|.-.-....|-.+...-
T Consensus 188 LRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~A 267 (421)
T PRK12798 188 LRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAA 267 (421)
T ss_pred HHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 3444456678899999888877777666666633 33333344444333 3455555666664223466788888889
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhh-----cCCcchHHHHHHHHH
Q 005642 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT-----SGEWEKSSLIRDIMR 566 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~ 566 (686)
...|+.+.|....+++..+... ...-...+..|.. ..+++++.+.++.+-
T Consensus 268 li~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 268 LIDGKTELARFASERALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9999999999999999997643 2223344444432 345666666655443
No 312
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.86 E-value=42 Score=32.27 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=25.7
Q ss_pred ccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCcCHHHHHHHHHHHH
Q 005642 183 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM----RRNGVLEDASTLASVLSACS 248 (686)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~ 248 (686)
+.+++++|.+++.. =...+.+.|+...|-++-.-+ .+.++++|......++..+.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~ 60 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELIS 60 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45666666665432 234556677766655544333 33455555555444544444
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.71 E-value=2.6 Score=36.21 Aligned_cols=88 Identities=11% Similarity=0.175 Sum_probs=65.8
Q ss_pred HHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCH
Q 005642 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88 (686)
Q Consensus 9 ~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 88 (686)
..+++.+...+.+.....+.+.+...+...++. ..+.++..|++.++.+....+++.... .-...++..+.+.|.+
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~-~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPD-LHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHH-HHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHH-HHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 346677777888889999999999877666676 999999999999988999998884443 3334566667777777
Q ss_pred HHHHHHHhhCCC
Q 005642 89 EKSLQLFNVMPQ 100 (686)
Q Consensus 89 ~~A~~~~~~m~~ 100 (686)
++|.-+|.++..
T Consensus 87 ~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 87 EEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHccc
Confidence 777777777644
No 314
>PRK10941 hypothetical protein; Provisional
Probab=83.68 E-value=5.8 Score=38.15 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
..+.+-.++.+.++++.|+++.+.++.+.|+++.-+..-+-+|.+.|.+..|..=++.-.++.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3566777789999999999999999999999998888999999999999999998888877654
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.63 E-value=1.5 Score=26.04 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
+-.+..++.+.|+.++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456778889999999999999999999963
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.40 E-value=20 Score=28.22 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+..+.+.+. ....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 44555666666778899999999999999999999999999988865443 3336766654
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.30 E-value=79 Score=34.99 Aligned_cols=176 Identities=14% Similarity=0.082 Sum_probs=99.6
Q ss_pred HHHHHHHHHHH-cCCCCC--hhHHHHHHHHHH-hcCChHHHHHHHhccCC----CChh-----hHHHHHHHHHccCCHHH
Q 005642 123 YGKQIHSHILV-NGLDFD--SVLGSSLVNLYG-KCGDFNSANQVLNMMKE----PDDF-----CLSALISGYANCGKMND 189 (686)
Q Consensus 123 ~a~~i~~~~~~-~g~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~----~~~~-----~~~~li~~~~~~g~~~~ 189 (686)
.|.+.++.+.+ ..++|. ..++-.+...+. ...+++.|+..+++... ++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34445555553 333333 335666667666 57889999999887642 2211 1224455666666665
Q ss_pred HHHHHhhcCCC----Ch----hhHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCcCHHHHHHHHHHHH--ccCChhh
Q 005642 190 ARRVFDRTTDT----SS----VMWNSM-ISGYISNNEDTEALLLFHKMRRNG---VLEDASTLASVLSACS--SLGFLEH 255 (686)
Q Consensus 190 A~~~~~~~~~~----~~----~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~~~~~~ 255 (686)
|...+++..+. .. ..+..+ +..+...+++..|++.++.....- ..|-...+..++.+.. +.+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88887765431 11 122223 223333478999999998876532 3444555556666654 4455666
Q ss_pred HHHHHHHHHHcC---------CCchHHHHHHHHHHHH--hcCChhHHHHHHHhcc
Q 005642 256 GKQVHGHACKVG---------VIDDVIVASALLDTYS--KRGMPSDACKLFSELK 299 (686)
Q Consensus 256 a~~~~~~~~~~g---------~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 299 (686)
+.+....+.... ..|...++..+++.++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666553322 1345566666666544 5677777777666554
No 318
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.92 E-value=35 Score=30.66 Aligned_cols=88 Identities=13% Similarity=-0.031 Sum_probs=58.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhcc-cCCch-----hHHHHHHHHHhCCCHHHHHHHHhhCCCCCchh--HHHHHHHHHhCC
Q 005642 277 ALLDTYSKRGMPSDACKLFSELK-VYDTI-----LLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS--WNSMIVGLSQNG 348 (686)
Q Consensus 277 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g 348 (686)
.+...+..+|++++|...++... .+... .--.|.+.....|.+|+|+..++....++-.. ...-...+...|
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 34556677788888887777655 22222 22345567777888888888888777764433 333456778888
Q ss_pred ChhhHHHHHHHHHHCC
Q 005642 349 SPIEALDLFCNMNKLD 364 (686)
Q Consensus 349 ~~~~A~~~~~~m~~~g 364 (686)
+-++|..-|.+..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888887764
No 319
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.91 E-value=8.1 Score=35.05 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
||-+.--+...|+++.|.+.|+..++++|...-+..+-+-.+.-.|+++-|.+
T Consensus 102 fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 102 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 33333333444555555555555555555443333333334444444444444
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.88 E-value=1.8 Score=27.44 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.++..++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688999999999999999999998875
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.60 E-value=11 Score=38.29 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=36.7
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 483 FARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
+...|+++.+...+.... +.....+..+++...-..|+.++|....+-++..+-+++.+....+..-...|-++++.-
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 344455555555444442 222333444444444444555555555554444333333322222222333444455555
Q ss_pred HHHHHHh
Q 005642 561 IRDIMRE 567 (686)
Q Consensus 561 ~~~~~~~ 567 (686)
.++++..
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 5554443
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.60 E-value=12 Score=33.52 Aligned_cols=98 Identities=11% Similarity=-0.032 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhH
Q 005642 141 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 220 (686)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 220 (686)
..+..+...|++.|+.+.|.+.|.++.+.... .... ...+-.+|+.....+++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~------------------------id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHK------------------------IDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHH------------------------HHHHHHHHHHHHHhCCHHH
Confidence 34666677777777777777777666542211 1111 3345667777777778877
Q ss_pred HHHHHHHHHHCCCC---cCHHHHHHHHHH--HHccCChhhHHHHHHHH
Q 005642 221 ALLLFHKMRRNGVL---EDASTLASVLSA--CSSLGFLEHGKQVHGHA 263 (686)
Q Consensus 221 A~~~~~~m~~~g~~---p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~ 263 (686)
+...+.+....--. ++...-..+..+ +...+++..|-+.|-..
T Consensus 92 v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 92 VEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 77777666543212 222221122222 23457777777766554
No 323
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.26 E-value=60 Score=32.81 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=42.2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005642 169 PDDFCLSALISGYANCGKMNDARRVFDRTTDT-------SSVMWNSMISGYISNNEDTEALLLFHKMRR 230 (686)
Q Consensus 169 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (686)
....+|..+...+-+.|+++.|...+.++.+. .+...-.-+..+-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456777777778888888888777766542 234444556666677888888888777766
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.06 E-value=50 Score=31.76 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.....|..+|.+.+|.++.++.+.++|-+...+..+..++...|+--.|.+-+..+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33445688999999999999999999999999999999999999998888887776654
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.05 E-value=2.6 Score=25.27 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=25.8
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988764
No 326
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.08 E-value=54 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.070 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
++.....+...|.+.|++.+|+..|-.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 5556666667777777777777666543
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.00 E-value=12 Score=29.05 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
++.+-+..+......|++....+.+.+|.+.+++..|.++|+..+.+.+. +...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44555566666678888888888999999999999999999877644332 4445655543
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.00 E-value=8.3 Score=34.80 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=51.5
Q ss_pred HhcCChHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC----CchhHHHHHHHHhhcCCcc
Q 005642 484 ARAGCLNEAVNLIEQMPFEA---DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE----NACAYIQLSSIFATSGEWE 556 (686)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 556 (686)
.+.|+ ++|.+.|-.+...| ++.....+ ..|....|.+++++++-+++++.+. ++..+..|++++.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 55677666664333 34444444 4444577899999999999985432 5788999999999999998
Q ss_pred hHHH
Q 005642 557 KSSL 560 (686)
Q Consensus 557 ~a~~ 560 (686)
.|--
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8753
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.68 E-value=1.9 Score=24.18 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=16.0
Q ss_pred hHHHHHHHHhhcCCcchHHHHHH
Q 005642 541 AYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777777777777777654
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.58 E-value=17 Score=38.34 Aligned_cols=130 Identities=20% Similarity=0.173 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 005642 142 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 221 (686)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 221 (686)
..+.++..+-+.|..++|+++-. +|| .-.....+.|+++.|.++..+. .+..-|..|..+....+++..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~---D~d-----~rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST---DPD-----QRFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC---Chh-----hhhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhH
Confidence 34444455555555555544321 121 1122334555666655554332 2244566666666666666666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 005642 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296 (686)
Q Consensus 222 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 296 (686)
.+.|.+... |..|+-.+...|+-+....+-....+.|.. | .-..+|...|+++++.+++.
T Consensus 686 ~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 686 SECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHH
Confidence 666665543 334555555555555444444444444321 1 12233444555555555443
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.22 E-value=6.3 Score=35.76 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
+....++.+.+.+.+.+|+...+.- +.+| |...-..+++.++-.|++++|..-++-+-++.|++..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3445566778888999999887665 5566 4555667888899999999999999988888887544
No 332
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.06 E-value=3.9 Score=23.33 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555555444
No 333
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.88 E-value=43 Score=31.27 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+.++-.++...|++-++++....++...|.+..+|+.-+.+....=+.++|..=+.++.+..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 344455666788899999999999999999999999999999998888899998888777643
No 334
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.68 E-value=8.3 Score=26.33 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=25.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
.+.-++.+.|++++|.+..+.+++.+|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567789999999999999999999988653
No 335
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.24 E-value=15 Score=28.64 Aligned_cols=61 Identities=8% Similarity=0.052 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 218 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
.-++.+-++.+...++.|++......+++|.+.+|+..|..+++.+... ...+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 3356667777777788999999999999999999999999999977633 122334555444
No 336
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.92 E-value=6.7 Score=36.16 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=51.2
Q ss_pred CChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHH
Q 005642 487 GCLNEAVNLIEQM-PFEADVGM-WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564 (686)
Q Consensus 487 g~~~~A~~~~~~~-~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (686)
..+..|+.-|.+. .+.|...+ |..-+-.+.+..+++.+..--++++++.|+.......++........+++|+..+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4455555544443 35565533 555555666667777777777777777777666677777777777777777777666
Q ss_pred HH
Q 005642 565 MR 566 (686)
Q Consensus 565 ~~ 566 (686)
..
T Consensus 104 a~ 105 (284)
T KOG4642|consen 104 AY 105 (284)
T ss_pred HH
Confidence 64
No 337
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.73 E-value=1e+02 Score=32.87 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=70.9
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHH----HHHHHHH-HH
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAV---NLIEQM-PFEADVGM----WSSILRG-CV 516 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~----~~~li~~-~~ 516 (686)
+-..|+++.|..+++....+ . |+ ...-..-+....+.|..+.+. +++... ...-+... +...... +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 44568999999999998853 3 64 444444555667788888887 444443 11112222 2222222 34
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
..++.+.|..++.++.+..|++...|..+.......+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5688999999999999999999999999988877665
No 338
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=77.43 E-value=97 Score=32.40 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=31.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 267 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 267 (686)
|.-.=+..+.+.-+++-++.++ +.||..+.-.++ +-.......++++++++.++.|
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG 230 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH
Confidence 3333355666666666666665 455544322222 2223445677888888777754
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.82 E-value=1.3e+02 Score=33.39 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhc
Q 005642 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKA 116 (686)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~ 116 (686)
..| .+|-.+.|.|++++|.++..+... .....|...+..+...
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 345 455667899999999999954433 4556778888888664
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.39 E-value=48 Score=28.37 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=9.8
Q ss_pred HHHhCCCHHHHHHHHhhCCC
Q 005642 312 VYSSCGRIEDAKHIFRTMPN 331 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~ 331 (686)
.+...|++++|..+|+++.+
T Consensus 53 l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 53 LLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHcCCHHHHHHHHHhhhc
Confidence 34444555555555555544
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.27 E-value=1.6e+02 Score=33.72 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHhccCCCCChhh-----HHHHHH---HHHhcCCHHHHHHHHhhCCC
Q 005642 44 ANRLLQMYMRCGNPTDALLLFDEMPRRNCFS-----WNAMIE---GFMKLGHKEKSLQLFNVMPQ 100 (686)
Q Consensus 44 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~li~---~~~~~g~~~~A~~~~~~m~~ 100 (686)
+..-+..+....++++|..+-+....|++.. +..... -+..+|++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 4455666667777999999988877665532 222222 24578999999999999865
No 342
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.06 E-value=31 Score=36.56 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=27.6
Q ss_pred hcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 005642 53 RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100 (686)
Q Consensus 53 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (686)
+.|+++.|.++..+. .+..-|..|.++....|++..|.+.|.+...
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 445555555443222 3455677777777777777777777766543
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.02 E-value=6.5 Score=21.99 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCChHHHHHHHh
Q 005642 144 SSLVNLYGKCGDFNSANQVLN 164 (686)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~ 164 (686)
..+...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666666554
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.72 E-value=16 Score=28.80 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 266 (686)
+..+-++.+...++.|++......+++|.+.+++..|.++++.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55566667777778899999999999999999999999999887654
No 345
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.90 E-value=20 Score=34.64 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 005642 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266 (686)
Q Consensus 217 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 266 (686)
++++++.++..=++-|+-||.+++..++..+.+.+++..|.++.-.|+..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44555555555555566666666666666666666655555555444443
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.90 E-value=17 Score=32.22 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
+++|+.-+++++.++|+...++..++++|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 456666777777799998888888998887755
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.78 E-value=6.5 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 543 IQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..++.+|.+.|+.+.|+++++++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46889999999999999999988854
No 348
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.32 E-value=2.8 Score=40.73 Aligned_cols=89 Identities=12% Similarity=0.152 Sum_probs=59.6
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHH
Q 005642 486 AGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 486 ~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
.|.+++|++.|... ...| ....|..-..++.+.++...|++-+..+++++|+....|-.-..+..-.|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45677777776665 2333 344455555666777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCCCCCC
Q 005642 564 IMREKHVGKLP 574 (686)
Q Consensus 564 ~~~~~~~~~~~ 574 (686)
...+.+.....
T Consensus 207 ~a~kld~dE~~ 217 (377)
T KOG1308|consen 207 LACKLDYDEAN 217 (377)
T ss_pred HHHhccccHHH
Confidence 77766554433
No 349
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.57 E-value=12 Score=29.03 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=29.2
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..+++.++.+|++......++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456666677777777777777788888888887776666653
No 350
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.51 E-value=13 Score=38.99 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=76.6
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChh
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDP--EIEHYSCMVDLFARAGCLNEAVNLIEQM-P-FEADVGMWSSILRGCVAHGDKG 522 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~ 522 (686)
..-.|+...|...+.... ...| .....-.|...+.+.|...+|-.++.+. . ....+.++-.+.+++....+++
T Consensus 617 wr~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 345688899999888776 4555 3344566777888888888888887665 2 2334566777888888899999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 523 LGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 523 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
.|++.++++++..|+++.+-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999998887777766554
No 351
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.44 E-value=1.8e+02 Score=32.26 Aligned_cols=187 Identities=11% Similarity=0.075 Sum_probs=86.6
Q ss_pred hCCChhhHHHHHHHHHHCCC-CCC-----HHHHHHHHHH--HHccCChHHHHHHHH--------HHHHhCCCcchhHHHH
Q 005642 346 QNGSPIEALDLFCNMNKLDL-RMD-----KFSLASVISA--CANISSLELGEQVFA--------RVTIIGLDSDQIISTS 409 (686)
Q Consensus 346 ~~g~~~~A~~~~~~m~~~g~-~p~-----~~t~~~ll~~--~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 409 (686)
-.+++..|...+..|....- .|+ ...+...+.+ +-..|+++.|...|. .....+...+..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 45677777777777664321 111 1222222222 234577777777776 4444454555554443
Q ss_pred H--HHHHHhchh----H--HHHHHHHHHHC-CCCC--CHHHHHHH-HHHHhccC--CHHHHHHHHHHHHHhc--CCCCC-
Q 005642 410 L--VDFYCKCGY----D--ALALFNEMRNT-GVKP--TIITFTAI-LSACDHCG--LVKEGQKWFDAMKWQY--HIDPE- 472 (686)
Q Consensus 410 l--i~~~~~~~~----~--A~~~~~~m~~~-~~~p--~~~~~~~l-l~~~~~~g--~~~~A~~~~~~~~~~~--~~~p~- 472 (686)
| +-.+...+. + +..+++.+... .-.| +..++..+ +.++.... ...++...+.+..+.. ....+
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 2 112221111 2 55666655431 1122 22333333 33332211 1124444444332223 12222
Q ss_pred --hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHH-----HHHHhcCChhHHHHHHHHHHc
Q 005642 473 --IEHYSCMVDLFARAGCLNEAVNLIEQM----PFEAD--VGMWSSIL-----RGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 473 --~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~li-----~~~~~~g~~~~A~~~~~~~~~ 533 (686)
..+++.|...+. .|+..+..+..... +..|| ...|..+. +.+...|+.++|.....+...
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 223444444444 67777755554443 22233 44564333 346778999999888776643
No 352
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.35 E-value=40 Score=32.71 Aligned_cols=103 Identities=12% Similarity=0.108 Sum_probs=63.5
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC---CCcchhHHHHHHHHHHh-chhHHHHHHHHHHHCCCCCCHH
Q 005642 363 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIG---LDSDQIISTSLVDFYCK-CGYDALALFNEMRNTGVKPTII 438 (686)
Q Consensus 363 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~-~~~~A~~~~~~m~~~~~~p~~~ 438 (686)
.|.+....+...++.......+++.+...+-+++... ..++...+. .+..+.+ ..++++.++..=.+.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irlllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHHHHccChHHHHHHHhCcchhccccchh
Confidence 3444455555555555555666676666665554321 122222222 2222222 2226777777777788889999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQ 466 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 466 (686)
+++.++..+.+.+++.+|.++.-.|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999888888877643
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.30 E-value=14 Score=27.47 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=30.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNL 495 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 495 (686)
+.++.++|+..|....++..-.|+ ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888777643332222 34667777777777777776654
No 354
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.63 E-value=1.8e+02 Score=31.68 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHcCCCchHHHH--HHHHHH-HHhcCChhHHHHHHHhc
Q 005642 253 LEHGKQVHGHACKVGVIDDVIVA--SALLDT-YSKRGMPSDACKLFSEL 298 (686)
Q Consensus 253 ~~~a~~~~~~~~~~g~~~~~~~~--~~l~~~-~~~~g~~~~A~~~~~~~ 298 (686)
...+.++++...+.|.. ..... ...... +....+.+.|...|+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~a 275 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLA 275 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 34566777777666521 11111 111122 33456677777777644
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.42 E-value=7.8 Score=21.92 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 540 CAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..+..++..+...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4578899999999999999999987765
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.12 E-value=67 Score=29.52 Aligned_cols=72 Identities=10% Similarity=0.144 Sum_probs=53.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCCHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-F----EADVGMWSSILR 513 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~~~~~~~li~ 513 (686)
.+.-++.+.+.+..++++...++-++ -+| +...-..+++.|+-.|++++|..-++-.. + .+....|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455667778889999998888763 345 67777889999999999999988777652 3 334566777776
Q ss_pred H
Q 005642 514 G 514 (686)
Q Consensus 514 ~ 514 (686)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 357
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=68.09 E-value=2.5e+02 Score=32.96 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHH-HHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCC
Q 005642 271 DVIVASALLDTYSKRGMPSDACK-LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 349 (686)
+..+-...+.++.+.|..+.+.. +...+..++...-...+.++...+..+....+...+.+++...-...+.++.+...
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~ 867 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPG 867 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCC
Confidence 44444455555555554433322 22222233444444445555555543333333344445565555555666655433
Q ss_pred hhhHHHHHHHHHH
Q 005642 350 PIEALDLFCNMNK 362 (686)
Q Consensus 350 ~~~A~~~~~~m~~ 362 (686)
...+...+....+
T Consensus 868 ~~~a~~~L~~al~ 880 (897)
T PRK13800 868 DPAARDALTTALT 880 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 3345555555544
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.09 E-value=61 Score=25.56 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=39.3
Q ss_pred HHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHH
Q 005642 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 242 (686)
..+...|++++|..+.+...-||...|-+|-.. +.|-.+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 445567777777777777766777777766554 4566666666666776665 555555543
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.94 E-value=3.6e+02 Score=34.46 Aligned_cols=106 Identities=11% Similarity=-0.056 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC--------CHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEA--------DVG 506 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--------~~~ 506 (686)
..+|....+.....|.++.|...+-...+ .+ -+..+--....+-..|+...|+.++++.- ..| .+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e-~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKE-SR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhh-cc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 36788888888889999999887776652 22 33455566777888999999999888651 111 122
Q ss_pred HHHHHHHH--------H-HhcCC--hhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 507 MWSSILRG--------C-VAHGD--KGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 507 ~~~~li~~--------~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
.-+..+.. | ...|+ .+.-++.|..+.+..|.....+..++
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 22222222 1 12333 33446777888888886555566555
No 360
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.71 E-value=65 Score=25.76 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=49.9
Q ss_pred ccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005642 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99 (686)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 99 (686)
.-++|..|.+.+-..+-.... +.---+..+..+|+|++|...=.....||...|-+|-. .+.|-.+++...+.++.
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~--v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEV--VALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHH--HHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCcHHHH--HHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 456788888888776642222 33344456788899999866666666788888877755 57787788877777665
Q ss_pred C
Q 005642 100 Q 100 (686)
Q Consensus 100 ~ 100 (686)
.
T Consensus 97 ~ 97 (116)
T PF09477_consen 97 S 97 (116)
T ss_dssp T
T ss_pred h
Confidence 5
No 361
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.30 E-value=10 Score=22.01 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=23.2
Q ss_pred CChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 519 GDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 519 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
|+.+.|..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788888999999888888887777664
No 362
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.45 E-value=30 Score=32.04 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCChh-------HHHHHHHHHHccC--CC----CchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 507 MWSSILRGCVAHGDKG-------LGRKVAERMIELD--PE----NACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.+-.+...|+..|+.+ .|...|+++.+.+ |. .......++.+..+.|++++|.+++.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445555666667643 4555555555532 22 2345667888889999999999999988864
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.15 E-value=16 Score=23.75 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=13.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 005642 208 MISGYISNNEDTEALLLFHKMRRN 231 (686)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~ 231 (686)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 364
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.73 E-value=2.4e+02 Score=31.36 Aligned_cols=172 Identities=8% Similarity=0.039 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHHhC-CCcc--hhHHHHHHHHHHhc--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 005642 383 SSLELGEQVFARVTIIG-LDSD--QIISTSLVDFYCKC--GYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQ 457 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 457 (686)
.+.+.|...+....... +.+. ..+...+....... ..++...++...... .+......-+..-...++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34466666666543322 2221 11233333333333 225555555543222 23334444455555889999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHH-HHHHHHHHc
Q 005642 458 KWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDK---GLG-RKVAERMIE 533 (686)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A-~~~~~~~~~ 533 (686)
..+..|... ..-...-.--+.+++...|+.++|...|+++....+ -|..+... +.|.. ... ...-...+
T Consensus 333 ~~i~~L~~~--~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~--fYG~LAa~--~Lg~~~~~~~~~~~~~~~~~- 405 (644)
T PRK11619 333 TWLARLPME--AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRG--FYPMVAAQ--RLGEEYPLKIDKAPKPDSAL- 405 (644)
T ss_pred HHHHhcCHh--hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC--cHHHHHHH--HcCCCCCCCCCCCCchhhhh-
Confidence 999988632 223444556678888889999999999999853322 23322221 22321 000 00000111
Q ss_pred cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 534 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.. .-...+..+...|+..+|...+..+.+
T Consensus 406 --~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~ 435 (644)
T PRK11619 406 --TQG--PEMARVRELMYWNMDNTARSEWANLVA 435 (644)
T ss_pred --ccC--hHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 111 134456667788888888888777665
No 365
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=62.64 E-value=20 Score=34.43 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=35.5
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 484 ARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 484 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
.+.|+.++|..+|+.. ...|+ +.....+......++++-+|-+.|-+++...|.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3567777777777665 45553 3344444444445566777777777777777766553
No 366
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.50 E-value=32 Score=26.29 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHH
Q 005642 124 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 190 (686)
Q Consensus 124 a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 190 (686)
+..+++.+.+.|+- +......+-.+-...|+.+.|+++++.+. .....|...+.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 44555555555532 22222222222223355555555555555 4444555555555544444333
No 367
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.34 E-value=2e+02 Score=29.26 Aligned_cols=116 Identities=9% Similarity=0.128 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH-HHHHHHH------hcCChHHHHHHHHhCC-CCC-CH
Q 005642 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYS-CMVDLFA------RAGCLNEAVNLIEQMP-FEA-DV 505 (686)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~------~~g~~~~A~~~~~~~~-~~p-~~ 505 (686)
-...++..+-..|.+.|+.+.|.+++++..= ++. ++...+. ..|. .++. ..+ |.
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf---------~~e~~~~~~F~~~~~~~~~g~--------~rL~~~~~eNR 100 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALF---------AFERAFHPSFSPFRSNLTSGN--------CRLDYRRPENR 100 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------HHHHHHHHHhhhhhcccccCc--------cccCCccccch
Confidence 3556777777788888888888888887651 111 0101110 0010 0111 112 33
Q ss_pred HHHH---HHHHHHHhcCChhHHHHHHHHHHccCCC-CchhHHHHHHHHh-hcCCcchHHHHHHHHHh
Q 005642 506 GMWS---SILRGCVAHGDKGLGRKVAERMIELDPE-NACAYIQLSSIFA-TSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 506 ~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 567 (686)
..|. ..+..+.+.|-+..|.+..+-++.++|. |+......+.-|+ +.++++--+++.+....
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3333 3456788999999999999999999998 7776777777664 67888777777775543
No 368
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.19 E-value=23 Score=27.69 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=40.0
Q ss_pred HHhcCChhHHHHHHHHHHccCCC----C-----chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 515 CVAHGDKGLGRKVAERMIELDPE----N-----ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 515 ~~~~g~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..+.||+..|.+.+.+..+.... . ..+...++.+....|++++|.+.+++..+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35778888888888877773221 1 2345667788889999999999998887643
No 369
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.76 E-value=2.9e+02 Score=30.84 Aligned_cols=100 Identities=11% Similarity=0.079 Sum_probs=57.5
Q ss_pred HHHHHhcCCcHHHHHHhccCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHH
Q 005642 48 LQMYMRCGNPTDALLLFDEMPRR-----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122 (686)
Q Consensus 48 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~ 122 (686)
++.+.+.+.+++|....+..... --..+...|..+.-.|++++|-...-.|...+..-|.--+..+... +
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~-----~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAEL-----D 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccc-----c
Confidence 45667777888888777666531 2245777778888888888887777777665555555444444333 1
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 005642 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGK 152 (686)
Q Consensus 123 ~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~ 152 (686)
.-..+...+-......+..+|..++..+..
T Consensus 438 ~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 111222222222223455566666666555
No 370
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=57.46 E-value=1.9e+02 Score=28.17 Aligned_cols=99 Identities=9% Similarity=-0.054 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-------ChHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcC
Q 005642 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG-------CLNEAVNLIEQMPFEADVGMWSSILRGCV----AHG 519 (686)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~li~~~~----~~g 519 (686)
.+..+|..+++++. +.|..+.......+...|...+ +...|...|.++-..-+......+...|. ...
T Consensus 127 ~d~~~A~~~~~~Aa-~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 127 LDLVKALKYYEKAA-KLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred cCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCc
Confidence 37778888888877 3454333233444444444431 22357777776632223444444443332 234
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
+.++|...|.++-+... ......+. ++...|
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 77888888888887665 44455555 555555
No 371
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=57.19 E-value=17 Score=33.36 Aligned_cols=55 Identities=24% Similarity=0.299 Sum_probs=27.5
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 484 ARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 484 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
.+.|+.+.|.+++.+. ...| ....|..+...-.+.|+++.|.+.+++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555555544 2333 23445555555555555555555555555555544
No 372
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.74 E-value=1.7e+02 Score=27.38 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHH
Q 005642 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALE 122 (686)
Q Consensus 43 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~ 122 (686)
....+++.+...+--.. .+....|..|++.-...+ .++.+-|..... =...|...++++.....++++
T Consensus 28 ~L~~Ll~~i~~~~~~~~---------~K~~l~~YlLlD~~~~~~--~~~~~~Fa~~f~-ip~~~~~~~~g~W~LD~~~~~ 95 (226)
T PF13934_consen 28 DLRALLDLILSSNVSLL---------KKHSLFYYLLLDLDDTRP--SELAESFARAFG-IPPKYIKFIQGFWLLDHGDFE 95 (226)
T ss_pred HHHHHHHHHhcCCcCHH---------HhHHHHHHHHHhcCcccc--ccHHHHHHHHhC-CCHHHHHHHHHHHHhChHhHH
Confidence 35556665555443221 234455666665411111 233333333222 012455667777766555666
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCC--ChhhHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 005642 123 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP--DDFCLSALISGYANCGKMNDARRVFDRTTDT 200 (686)
Q Consensus 123 ~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 200 (686)
.|...+.. +........-++..+...|+.+.|..+++....+ +...-..++.. ..++.+.+|..+-+...+.
T Consensus 96 ~A~~~L~~-----ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~ 169 (226)
T PF13934_consen 96 EALELLSH-----PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDE 169 (226)
T ss_pred HHHHHhCC-----CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchh
Confidence 66555421 1111122234666666677777777777665531 11112222223 4556666666666655543
Q ss_pred C-hhhHHHHHHHHHh
Q 005642 201 S-SVMWNSMISGYIS 214 (686)
Q Consensus 201 ~-~~~~~~li~~~~~ 214 (686)
. ...+..++..+..
T Consensus 170 ~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 170 LRRRLFEQLLEHCLE 184 (226)
T ss_pred hhHHHHHHHHHHHHH
Confidence 2 3345555555543
No 373
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.93 E-value=1.3e+02 Score=25.76 Aligned_cols=83 Identities=11% Similarity=0.192 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---------CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHH
Q 005642 74 SWNAMIEGFMKLGHKEKSLQLFNVMPQ---------KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGS 144 (686)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 144 (686)
..|.++.-....+++...+.+++.+.. .+..+|.+++++.+... .....+..++..+.+.+.++++.-|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSs-SaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSS-SAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccCh-HHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 467788777888888888888877743 46678999999997652 23567888999999988999999999
Q ss_pred HHHHHHHhcCChHH
Q 005642 145 SLVNLYGKCGDFNS 158 (686)
Q Consensus 145 ~l~~~~~~~g~~~~ 158 (686)
.++.+..+ |...+
T Consensus 120 ~li~~~l~-g~~~~ 132 (145)
T PF13762_consen 120 CLIKAALR-GYFHD 132 (145)
T ss_pred HHHHHHHc-CCCCc
Confidence 99998766 44433
No 374
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.71 E-value=55 Score=25.05 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHH
Q 005642 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 320 (686)
Q Consensus 256 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 320 (686)
+.+++..+...|+- +......+-.+-...|+.+.|.+++..+. ..+..|..++.++...|+-+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 44556666666532 22222222222223455555666555555 44445555555555444433
No 375
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.16 E-value=1.1e+02 Score=24.47 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHH
Q 005642 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 175 (686)
Q Consensus 120 ~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 175 (686)
..++|..|.+.+...+- ....+--.-+..+.+.|++++|+..=.....||...|-
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~ 75 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWA 75 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHH
Confidence 34445555554444432 11112222223344445555553333333334444443
No 376
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.88 E-value=1e+02 Score=23.87 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CchhHHHHHHHHhhcCCc-chHHHHHHHH
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE--NACAYIQLSSIFATSGEW-EKSSLIRDIM 565 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 565 (686)
|...-..+...+...|+++.|+..+-+++..+|+ +..+-..++.++...|.- ..+.++.++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566666777788888888888888888876665 356667777777777764 3555555554
No 377
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.87 E-value=50 Score=30.03 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 501 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
..|++..+..++..+...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456666666666666666777777666666666666
No 378
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.28 E-value=1.7e+02 Score=26.18 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=13.4
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005642 489 LNEAVNLIEQM-PFEADVGMWSSILRGC 515 (686)
Q Consensus 489 ~~~A~~~~~~~-~~~p~~~~~~~li~~~ 515 (686)
+++|.+.|++. ..+|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44555555555 2456666665555544
No 379
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.65 E-value=3.4e+02 Score=29.60 Aligned_cols=79 Identities=6% Similarity=-0.049 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc----CChHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCChhH
Q 005642 452 LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARA----GCLNEAVNLIEQMPFEADVGMWSSILRGC----VAHGDKGL 523 (686)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~ 523 (686)
+.+.+...+..... .-+......+.+.|... .+++.|...+.....++ ....-.+...+ ...+ +..
T Consensus 454 ~~~~~~~~~~~a~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~ 527 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV-LHL 527 (552)
T ss_pred chhHHHHHHHHHHh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch-hHH
Confidence 34445555554431 12444445555554433 34666777666664444 22222222222 1223 677
Q ss_pred HHHHHHHHHccCC
Q 005642 524 GRKVAERMIELDP 536 (686)
Q Consensus 524 A~~~~~~~~~~~p 536 (686)
|.+.++++.+.+.
T Consensus 528 a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 528 AKRYYDQASEEDS 540 (552)
T ss_pred HHHHHHHHHhcCc
Confidence 7777777776555
No 380
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.42 E-value=2.7e+02 Score=30.83 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=32.8
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 481 DLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
..+++.|..++-.++|+-. ....+-.-++|+.+|.++.+.|.+++|..
T Consensus 352 ~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 3456666666655555422 23455566789999999999999998853
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.06 E-value=98 Score=25.62 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
+..+-++....-++.|++.....-+++|.+.+|+..|..+++-+... ..+...+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34455666666778899999999999999999999999999877654 333444454443
No 382
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.55 E-value=65 Score=31.65 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 474 EHYSCMVDLFARAGCLNEAVNLIEQMP----FEAD--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
..|.-=++-|.+..++..|...|.+-- -.|| .+.|++-..+-...|++..|+.-..+++..+|.+.-+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 344445566788888999999887761 2333 5667777777777889999999999999999999988988888
Q ss_pred HHhhcCCcchHHHHHHHH
Q 005642 548 IFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~ 565 (686)
++....++.+|..+.+..
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 988999877777766543
No 383
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.40 E-value=2.1e+02 Score=26.79 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=18.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCcc
Q 005642 375 VISACANISSLELGEQVFARVTIIGLDSD 403 (686)
Q Consensus 375 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 403 (686)
+...-...+++.+|.++|+++....+..+
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 33334566778888888887776554443
No 384
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.41 E-value=2.4e+02 Score=26.87 Aligned_cols=116 Identities=12% Similarity=0.206 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhchh--HHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----hccCCHHHHHHHHHHHHHhcCC--CC---C
Q 005642 406 ISTSLVDFYCKCGY--DALALFNEMRNT-GVKPTIITFTAILSAC-----DHCGLVKEGQKWFDAMKWQYHI--DP---E 472 (686)
Q Consensus 406 ~~~~li~~~~~~~~--~A~~~~~~m~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~~~--~p---~ 472 (686)
+|..-|.+|....+ .-..++++.... .--|.+. ...+|+-| .+.|++++|..=|-++.+.+.- .| .
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRtt 271 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 271 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhH
Confidence 44445566665544 333355554322 2233443 33445555 3568888876655544432221 12 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQM-----PFEADVGMWSSILRGCVAHGDKGLGRKVA 528 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 528 (686)
.--|..|..++.+.|- .=|+.- +..|.......++.+|... ++.+-++++
T Consensus 272 CLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 2346667777777652 112221 2445566678888887544 455533333
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.91 E-value=62 Score=29.41 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=30.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
...+.+......+.+.+.....|++.+|..++.++...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444544444444444433455666666666666666777777776666665
No 386
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=48.31 E-value=1.5e+02 Score=24.31 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHh-chhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005642 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCK-CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMK 464 (686)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (686)
+.+..++..+.+.|+-.|.......+....+ .+.....+-.++.+.|+.++.. ... +......+.|..+.++-.
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~~~~i--~~~---l~~~~~~e~a~~~~~kk~ 83 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGKGPRRIRQKLKQKGIDREII--EEA---LEEYDEEEEALELAEKKY 83 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT--HHHH--HHH---HTCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccccHHHHHHHHHHHCCChHHH--HHH---HHHhhHHHHHHHHHHHHH
Confidence 4455666666777777666666666666665 4446667777788888764432 222 223344455666666655
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHH
Q 005642 465 WQYHIDPEIEHYSCMVDLFARAGC-LNEAVNLI 496 (686)
Q Consensus 465 ~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~ 496 (686)
....-.++.....-++..+.+.|- ++.+..++
T Consensus 84 ~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~vi 116 (121)
T PF02631_consen 84 RRYRKPSDRKRKQKLIRFLMRRGFSYDVIRRVI 116 (121)
T ss_dssp HHTTTS-CHHHHHHHHHHHHHTT--HHHHHHHC
T ss_pred hcccCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 443334567777777777777773 44444433
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=48.04 E-value=2.7e+02 Score=27.06 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=27.0
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHH
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNM 360 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (686)
....|..+|.+.+|.++.++...- +...|-.++..++..|+--.+.+-++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334555555555555555555442 2244555555555555555555544444
No 388
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.96 E-value=1e+02 Score=25.51 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMV 480 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 480 (686)
+..+-+..+...++.|++.....-+++|.+.+++..|.++|+-.+.+.| +....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 3445555666667889999999999999999999999999998874333 3333455444
No 389
>PRK10941 hypothetical protein; Provisional
Probab=47.78 E-value=1.2e+02 Score=29.22 Aligned_cols=65 Identities=9% Similarity=0.007 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.+.+-.+|.+.++++.|+...+.+ .+.|+ +.-+.--.-.|.+.|.+..|..-++..++.-|+++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 344555666777777777777766 34453 444555566667777777777777777777776654
No 390
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=47.76 E-value=1.5e+02 Score=23.92 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=9.7
Q ss_pred HHHHHHhCCCHHHHHHHHhhCC
Q 005642 309 MITVYSSCGRIEDAKHIFRTMP 330 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~ 330 (686)
++..|...++.++|...+.++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3344444445555555444443
No 391
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.46 E-value=5e+02 Score=29.95 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCCcHHHHHHhccCC
Q 005642 43 IANRLLQMYMRCGNPTDALLLFDEMP 68 (686)
Q Consensus 43 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 68 (686)
-|..|+..|...|..++|++++.+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHh
Confidence 45566666666666666666665544
No 392
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.45 E-value=14 Score=37.95 Aligned_cols=95 Identities=9% Similarity=0.084 Sum_probs=66.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 005642 444 LSACDHCGLVKEGQKWFDAMKWQYHIDPEI-EHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD-VGMWSSILRGCVAHGD 520 (686)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~ 520 (686)
+..+...+.++.|..++.+++ .+.|+. ..|..-..++.+.+++..|+.=+.++ +..|+ ...|-.-..+|.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 445566788899999998887 467754 34444447788888888887765555 45554 3345555566677778
Q ss_pred hhHHHHHHHHHHccCCCCchh
Q 005642 521 KGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~~~~ 541 (686)
+.+|+..++....+.|+++..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 888888888888888977653
No 393
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=46.88 E-value=1.1e+02 Score=25.15 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHc-------cCCCCchhH----HHHHHHHhhcCCcchHHHHHHHHH
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIE-------LDPENACAY----IQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
.+..|..++...|++++++...++++. ++.+.-..| ..-+.++...|+.++|...|+..-
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 344455556666666665555554443 444433333 344556777888888888776543
No 394
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.51 E-value=1e+02 Score=25.98 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=42.7
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 470 DPEIEHYSCMVDLFARAGCL---NEAVNLIEQM-P-FEAD--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.++..+-..+..++.+..+. .+.+.+++++ + -.|+ .....-|.-++.+.++++.+++..+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 55666666677777766544 3445555555 2 2232 223333455667777788888888777777776543
No 395
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.09 E-value=21 Score=36.65 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=72.6
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch
Q 005642 480 VDLFARAGCLNEAVNLIEQM-PFEADVGM-WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 557 (686)
+.-+...+.++.|+.++.++ ...|+... |..-..++.+.+++..|+.-+.++++.+|.....|..-+.++...+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 44456778899999999887 57786544 44445778899999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHh
Q 005642 558 SSLIRDIMRE 567 (686)
Q Consensus 558 a~~~~~~~~~ 567 (686)
|...++....
T Consensus 91 A~~~l~~~~~ 100 (476)
T KOG0376|consen 91 ALLDLEKVKK 100 (476)
T ss_pred HHHHHHHhhh
Confidence 9999886554
No 396
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=45.94 E-value=74 Score=30.39 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..+=..+.+.++++.|....++.+.++|+++.-+..-+.+|.+.|.+..|++-+....+.-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 3344557889999999999999999999998888889999999999999999888766543
No 397
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=45.83 E-value=96 Score=26.47 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=44.7
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch
Q 005642 489 LNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557 (686)
Q Consensus 489 ~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 557 (686)
.+.|.++.+-|+ .....-.........|++..|.++.+.++..+|++..+-...+.+|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 345566666664 233334455666789999999999999999999998888888888876664433
No 398
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.79 E-value=3.5e+02 Score=27.68 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=36.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005642 173 CLSALISGYANCGKMNDARRVFDRTTD------TSSVMWNSMISGYISNNEDTEALLLFHKMRR 230 (686)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (686)
.+..+...|..+|+++.|++.|.+..+ .-+..|-.+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 344555666667777777776666432 1244566677777777777777777666654
No 399
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=45.14 E-value=3.8e+02 Score=27.89 Aligned_cols=234 Identities=6% Similarity=-0.044 Sum_probs=118.7
Q ss_pred HHHHHhcCCcHHHHHHhccCC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHH
Q 005642 48 LQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGK 125 (686)
Q Consensus 48 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~ 125 (686)
++++...| +.+...+-... .++...+-.-..++....+......+.+.+..++...-....+++... +... +.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--~~~~-a~ 119 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWL--GGRQ-AE 119 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcC--CchH-HH
Confidence 66666666 44555444333 233333333333333233333244444555555655666777777665 2233 33
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhH
Q 005642 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 205 (686)
Q Consensus 126 ~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 205 (686)
..+..+++ .+++.+....+.++...+. +....+..-+..+|...-..-+.++...++.+..-.+-.-....|...-
T Consensus 120 ~~L~~~L~---~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR 195 (410)
T TIGR02270 120 PWLEPLLA---ASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVR 195 (410)
T ss_pred HHHHHHhc---CCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHH
Confidence 33333333 2344555555566554432 2222222233356666666666667666665444433333445677777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 005642 206 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 285 (686)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 285 (686)
..-+.+....|. .+|...+...... ++......+....... ..+.+...+..+.+.. .+-...+.++.+.
T Consensus 196 ~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d~-----~vr~~a~~AlG~l 265 (410)
T TIGR02270 196 FAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVA-GGPDAQAWLRELLQAA-----ATRREALRAVGLV 265 (410)
T ss_pred HHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhC-CchhHHHHHHHHhcCh-----hhHHHHHHHHHHc
Confidence 777777777777 6666666653322 2222222222222222 3335555555555431 2455667777788
Q ss_pred CChhHHHHHHHhccc
Q 005642 286 GMPSDACKLFSELKV 300 (686)
Q Consensus 286 g~~~~A~~~~~~~~~ 300 (686)
|+...+..+.+.+..
T Consensus 266 g~p~av~~L~~~l~d 280 (410)
T TIGR02270 266 GDVEAAPWCLEAMRE 280 (410)
T ss_pred CCcchHHHHHHHhcC
Confidence 887776666666653
No 400
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.08 E-value=3.8e+02 Score=27.92 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCCC-ChhhHHHHHHHHHccCCHHHHHHHHhhc---CCCChhhHHHHHHHH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP-DDFCLSALISGYANCGKMNDARRVFDRT---TDTSSVMWNSMISGY 212 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~ 212 (686)
..+......++.. + .|+...++.+++.+... ... ..+...+++... ...+...+..+++++
T Consensus 173 ~i~~~al~~l~~~-s-~Gd~R~aln~Le~~~~~~~~I-------------t~~~v~~~~~~~~~~~d~~~~~~~~~isa~ 237 (413)
T PRK13342 173 ELDDEALDALARL-A-NGDARRALNLLELAALGVDSI-------------TLELLEEALQKRAARYDKDGDEHYDLISAL 237 (413)
T ss_pred CCCHHHHHHHHHh-C-CCCHHHHHHHHHHHHHccCCC-------------CHHHHHHHHhhhhhccCCCccHHHHHHHHH
Confidence 4455555555443 2 57787777777665321 001 122222222221 112223445555555
Q ss_pred Hh---cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 005642 213 IS---NNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246 (686)
Q Consensus 213 ~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 246 (686)
.+ .++.+.|+..+..|.+.|..|....-..+..+
T Consensus 238 ~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 238 HKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 54 47899999999999998877765444333333
No 401
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.78 E-value=2.3e+02 Score=27.37 Aligned_cols=55 Identities=13% Similarity=-0.046 Sum_probs=25.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 005642 209 ISGYISNNEDTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 265 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 265 (686)
|.+++..|+|.+++...-+--+. .++|.. .-.-|-.|.+.+++..+.++-..-++
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 55666666666665543332221 133322 22233344555555555555544444
No 402
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=43.73 E-value=4.2e+02 Score=28.05 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 398 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 398 (686)
..+++..+.++.++.-...+..+|..- .-+...|..++.+|... ..+.-..+|+++.+.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 334444455555555555555555542 23334444444444444 334444444444443
No 403
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=43.26 E-value=3.2e+02 Score=26.56 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHhc-cC-CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHHHH
Q 005642 436 TIITFTAILSACDH-CG-LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP----FEADVGMWS 509 (686)
Q Consensus 436 ~~~~~~~ll~~~~~-~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~ 509 (686)
|..+...+++.... .+ ....-.++.+-+...++-.++..+...++..++..+++.+-.++++... ...|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 44444445444433 11 2222233333333334444555555556666666666666666655542 112445566
Q ss_pred HHHHHHHhcCChhH
Q 005642 510 SILRGCVAHGDKGL 523 (686)
Q Consensus 510 ~li~~~~~~g~~~~ 523 (686)
.+|......||..-
T Consensus 243 ~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 243 EFIKLIVESGDQEV 256 (292)
T ss_pred HHHHHHHHcCCHHH
Confidence 66666666665554
No 404
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.05 E-value=37 Score=31.31 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=41.8
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD 504 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 504 (686)
..+.++.+.+.+++.+.. ++.| ....|.-+...-.+.|+++.|.+.|++. ++.|+
T Consensus 5 ~~~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 456788888888888876 4556 5778888888888888888888888876 45554
No 405
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=43.05 E-value=4.3e+02 Score=27.98 Aligned_cols=160 Identities=9% Similarity=0.093 Sum_probs=97.0
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379 (686)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 379 (686)
|.....+++..+..+.+..-.+.+..+|.. .+-..|..++.+|..+ ..+.-..+++++.+. --+...+..-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 556778889999999999999999998876 4667899999999998 677788899988875 33444444444444
Q ss_pred HccCChHHHHHHHHHHHHhCCCcc-----hhHHHHHHHHHHhchhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCH
Q 005642 380 ANISSLELGEQVFARVTIIGLDSD-----QIISTSLVDFYCKCGYDALALFNEMRN-TGVKPTIITFTAILSACDHCGLV 453 (686)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~ 453 (686)
...++.+.+...|..+..+-++.. ..+|..|...-....+..+.+..+... .|...-.+.+.-+-.-|....++
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 445888888899988876544311 123333333333222233333333322 22222223333333444445555
Q ss_pred HHHHHHHHHHH
Q 005642 454 KEGQKWFDAMK 464 (686)
Q Consensus 454 ~~A~~~~~~~~ 464 (686)
++|++++..+.
T Consensus 222 ~eai~Ilk~il 232 (711)
T COG1747 222 TEAIRILKHIL 232 (711)
T ss_pred HHHHHHHHHHh
Confidence 55555555444
No 406
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.99 E-value=85 Score=21.45 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=22.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 244 (686)
.+.-++.+.|++++|.+..+.+++ +.|+..-...|-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 345566777778888877777777 466655544443
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.97 E-value=2.2e+02 Score=24.48 Aligned_cols=100 Identities=9% Similarity=0.113 Sum_probs=62.8
Q ss_pred HHHHHcCCCCChh--HHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHH
Q 005642 129 SHILVNGLDFDSV--LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206 (686)
Q Consensus 129 ~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 206 (686)
..|.+.+..++.. ..|.++.-....+++.....+++.+..-+...+ . ...+...|+
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~----~------------------~~~~~ssf~ 83 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNI----I------------------GWLDNSSFH 83 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHH----h------------------hhcccchHH
Confidence 3444455555542 356666666666667766666666532110000 0 012356788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcc
Q 005642 207 SMISGYISNNE-DTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250 (686)
Q Consensus 207 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 250 (686)
.++.+..+... ---+..+|+-|++.+.+++..-|..++.++.+-
T Consensus 84 ~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 84 IIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 88888866655 445677888888878889999999999888765
No 408
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=42.71 E-value=65 Score=24.58 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=15.8
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 005642 185 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217 (686)
Q Consensus 185 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 217 (686)
.+.+.+..+++.++.++..+|..+..++-..|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 344444444444444445555555555444443
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.59 E-value=1.6e+02 Score=24.52 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=32.4
Q ss_pred HHHHHHHHHHc--cCCCCchhHHHHHHHHhhcCCcchHHHHHHH
Q 005642 523 LGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDI 564 (686)
Q Consensus 523 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (686)
.+..+|..|.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777776 4455677888888888999999999988873
No 410
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.32 E-value=30 Score=28.86 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=24.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 005642 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 246 (686)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 246 (686)
..|.-.+|..+|++|+++|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 446777899999999999999986 4455544
No 411
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.51 E-value=81 Score=24.07 Aligned_cols=31 Identities=10% Similarity=0.360 Sum_probs=14.2
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHhCCC
Q 005642 319 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 349 (686)
Q Consensus 319 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 349 (686)
.+++.++++.++.+++.+|..+..++...|.
T Consensus 46 ~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 46 RDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 3444444444444444444444444444443
No 412
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.48 E-value=4.2e+02 Score=27.87 Aligned_cols=239 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh---------------HHHHHH
Q 005642 361 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---------------DALALF 425 (686)
Q Consensus 361 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------------~A~~~~ 425 (686)
+..+..-...........-...+.++...+.+..+...|.......++.-+..|.+.|. .+...-
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005642 426 NEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-----EIEHYSCMVDLFARAGCLNEAVNLIEQMP 500 (686)
Q Consensus 426 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (686)
+.|.....+-....+-...-.|.+...+..|+++..... ..+.| -...-......+......++|+.+++-+.
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv--~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~ 166 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLV--SRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLA 166 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------------------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 501 -----------------------------------FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 501 -----------------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
..|......--+.++....+...+.+-.+-......+.+.....-
T Consensus 167 ~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LK 246 (696)
T KOG2471|consen 167 EIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLK 246 (696)
T ss_pred HHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHH
Q ss_pred HHHHhhcCCcchHHHHHHHHHhcCCCCCCCccce---------eeccccceeehhhhhhhhcHHHHhh
Q 005642 546 SSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA---------DGIAFNCWFLDTMFLQLANFDEIKQ 604 (686)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (686)
...+.-.|++.+|.+.+- ..++.+.||...- ..++-.++....--.....|.++.+
T Consensus 247 sq~eY~~gn~~kA~KlL~---~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLL---VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred HHHHHHhcchHHHHHHHH---hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.28 E-value=2e+02 Score=23.24 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRR 230 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (686)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4588888888888999999999888766
No 414
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.23 E-value=60 Score=19.45 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=19.0
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
.++.|..+|++.+...| ++..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46788888888888887 455566554
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.11 E-value=1.9e+02 Score=24.77 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=42.3
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 224 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
+.+.+++.|++++..-. .++..+...++.-.|.++|+.+.+.++..+..|...-++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 44455667776665543 46666666666688888888888887766666555556666666643
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=38.88 E-value=5.6e+02 Score=28.09 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=25.9
Q ss_pred HHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 322 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 322 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
...++.+.+-++...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|...+.-+.+.|+......+-..+
T Consensus 393 i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 393 IEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344444444444445566666666766666666665543311 1223444444455555554444444433
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.62 E-value=1.5e+02 Score=22.98 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=14.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHc
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
+.......|+.++|...++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445566677777666666666
No 418
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.51 E-value=3.3e+02 Score=25.36 Aligned_cols=97 Identities=11% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---ChhHH--HHHHHHHHhcCChHHHHHHHHhCC---CCCC
Q 005642 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP---EIEHY--SCMVDLFARAGCLNEAVNLIEQMP---FEAD 504 (686)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~---~~p~ 504 (686)
+.+...-++.|+--|.-+..+.+|.+.|.. ..++.| +...+ ..-+......|++++|++....+. +.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~---e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK---ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc---ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 344555566666655555555556665554 335555 22222 344556678888888888888873 3333
Q ss_pred HHHHHHHHH----HHHhcCChhHHHHHHHHHH
Q 005642 505 VGMWSSILR----GCVAHGDKGLGRKVAERMI 532 (686)
Q Consensus 505 ~~~~~~li~----~~~~~g~~~~A~~~~~~~~ 532 (686)
...+-.+.. -..+.|..++|++.++.=+
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 322222211 1356677777777665433
No 419
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.44 E-value=6.5e+02 Score=28.72 Aligned_cols=256 Identities=13% Similarity=0.122 Sum_probs=128.9
Q ss_pred HHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH-
Q 005642 147 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF- 225 (686)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~- 225 (686)
=..|...|+++.|++.-+.-++.=...+..-...|.+.+++..|-+++-++ ..++..+.--+....+.+ ++..|
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L 439 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFL 439 (911)
T ss_pred HHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHH
Confidence 345667788888888765542111123444456677888888888888777 334555555555666655 44433
Q ss_pred HHHHHCCCCcCHHHHHH-----HHHHH-HccCChh----hHHHHHHHHH--------Hc-CCCchHHHHHHHHHHHHhcC
Q 005642 226 HKMRRNGVLEDASTLAS-----VLSAC-SSLGFLE----HGKQVHGHAC--------KV-GVIDDVIVASALLDTYSKRG 286 (686)
Q Consensus 226 ~~m~~~g~~p~~~~~~~-----ll~~~-~~~~~~~----~a~~~~~~~~--------~~-g~~~~~~~~~~l~~~~~~~g 286 (686)
.+=++ .++|...+-.. ++..+ .+.++.+ ++..-++.-. +. ...-+.....+........|
T Consensus 440 ~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~ 518 (911)
T KOG2034|consen 440 DKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHG 518 (911)
T ss_pred HHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHcc
Confidence 33333 25555443333 22222 2333332 2222221111 10 01112222233334444556
Q ss_pred ChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCC
Q 005642 287 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 366 (686)
Q Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 366 (686)
+.++...+-.-+ .-|..++.-++..+.+++|++++..-..+.. .-...-.+. ...+.+....+..+.. .
T Consensus 519 ~~e~ll~fA~l~-----~d~~~vv~~~~q~e~yeeaLevL~~~~~~el--~yk~ap~Li-~~~p~~tV~~wm~~~d---~ 587 (911)
T KOG2034|consen 519 RQEELLQFANLI-----KDYEFVVSYWIQQENYEEALEVLLNQRNPEL--FYKYAPELI-THSPKETVSAWMAQKD---L 587 (911)
T ss_pred CHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhccchhh--HHHhhhHHH-hcCcHHHHHHHHHccc---c
Confidence 655554433322 2355677888889999999998887744322 111111111 1223333333333222 2
Q ss_pred CCHHHHHHHHHHHHcc---CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh
Q 005642 367 MDKFSLASVISACANI---SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419 (686)
Q Consensus 367 p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 419 (686)
.+..-...++..+.+. .....+...++.....-...+..++|.++..|.+..+
T Consensus 588 ~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 588 DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 2223333444444444 2344555555544444446678889999999988766
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.66 E-value=1.7e+02 Score=23.57 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888889999999999999988876
No 421
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.09 E-value=66 Score=31.24 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 241 (686)
-||..|....+.||+++|+.++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 36678888888888888888888888877655444543
No 422
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.24 E-value=1.5e+02 Score=24.70 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHhccCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhh
Q 005642 44 ANRLLQMYMRCGNPTDALLLFDEMPR-----RNCFSWNAMIEGFMKLGHKEKSLQLFNV 97 (686)
Q Consensus 44 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~ 97 (686)
|-.+=-.|++. .+++..+|+.|.. .-+.-|..-...+...|++++|.++|+.
T Consensus 68 ylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 68 YLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44444444443 3377777777764 2345577777777788888888888764
No 423
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.09 E-value=2.3e+02 Score=29.18 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=39.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 005642 174 LSALISGYANCGKMNDARRVFDRTT-----------DTSSVMWNSMISGYISNNEDTEALLLFHKMR 229 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (686)
.-.+++.++-.||+..|+++++.+. ...+.++..+.-+|.-.+++.+|++.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777766432 2345677778888888888888888887764
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.05 E-value=1.4e+02 Score=19.86 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=15.6
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 005642 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVL 244 (686)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 244 (686)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444555555555555555554444444433
No 425
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=34.34 E-value=5.7e+02 Score=26.81 Aligned_cols=111 Identities=8% Similarity=0.036 Sum_probs=66.9
Q ss_pred hhHHHH-HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHH
Q 005642 119 AALEYG-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVF 194 (686)
Q Consensus 119 ~~~~~a-~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 194 (686)
|++..| +++++.+....-.|+.....+ ..+...|+++.+...+..... ....+...++....+.|++++|..+-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 344443 345555554444455444433 345577888888888765543 55577778888888888888888877
Q ss_pred hhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005642 195 DRTTDT---SSVMWNSMISGYISNNEDTEALLLFHKMRRN 231 (686)
Q Consensus 195 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (686)
+-|... ++.....-....-+.|-++++.-.+++....
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 766542 2222222222233446677888888777653
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.19 E-value=63 Score=22.91 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRR 230 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (686)
-.-.-.+|.+|.+.|++++|.++++++.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445678889999999999988888754
No 427
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.01 E-value=4.5e+02 Score=25.83 Aligned_cols=78 Identities=10% Similarity=0.111 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHh----------CCCHHHHHHHH
Q 005642 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS----------CGRIEDAKHIF 326 (686)
Q Consensus 257 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A~~~~ 326 (686)
.++|+.+.+.++.|.-..+..+.-.+...=.+.+.+.+++.+...+.. +..|+..||. .|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 467777777788888777777777777777788888888776532221 4444444443 57777777777
Q ss_pred hhCCCCCch
Q 005642 327 RTMPNKSLI 335 (686)
Q Consensus 327 ~~~~~~~~~ 335 (686)
+.-+.-|+.
T Consensus 342 Q~yp~tdi~ 350 (370)
T KOG4567|consen 342 QNYPTTDIS 350 (370)
T ss_pred hcCCCCCHH
Confidence 665554443
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.89 E-value=2.2e+02 Score=31.04 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=12.9
Q ss_pred HHHHHHHhcCChHHHHHHHhccC
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMK 167 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~ 167 (686)
+|..+|...|++-.+.++++.+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 45555555555555555555544
No 429
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.04 E-value=1.7e+02 Score=31.28 Aligned_cols=135 Identities=9% Similarity=0.003 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC--CHHHH
Q 005642 434 KPTIITFTAILSACDHC--GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA--DVGMW 508 (686)
Q Consensus 434 ~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~ 508 (686)
-|+..+..+++.-.... ...+.|-.++..|. ..+.|--..++.-+-...-.|+...|...+... ..+| ..+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 35555555544433221 23344555555554 233332222222222223478888898887766 3344 23345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
..|.....+.|-.-.|-.++.+.+.+....+-++..+++++....+.+.|++.++...++..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 55777777888888899999999988877778889999999999999999999997776443
No 430
>PHA02875 ankyrin repeat protein; Provisional
Probab=32.95 E-value=5.7e+02 Score=26.44 Aligned_cols=231 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCChhH--HHHHHHHHHhcCChHHHHHHHhccCCCChh--hHHHHHHHHHccCCHHHHHHHHhhcCCC
Q 005642 125 KQIHSHILVNGLDFDSVL--GSSLVNLYGKCGDFNSANQVLNMMKEPDDF--CLSALISGYANCGKMNDARRVFDRTTDT 200 (686)
Q Consensus 125 ~~i~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~ 200 (686)
..+.+.+++.|..|+... ..+.+...+..|+.+-+.-+++.-..++.. ....-+...+..|+.+.+..+++.....
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Q ss_pred ChhhHH---HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHccCChhhHHHHHHHHHHcCCCchHHHH
Q 005642 201 SSVMWN---SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA--SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275 (686)
Q Consensus 201 ~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 275 (686)
+..... +.+...+..|+. ++++.+.+.|..|+..... +.+...+..|+.+.+..+++.-.. +.......
T Consensus 95 ~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~--~~~~d~~g 168 (413)
T PHA02875 95 DDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC--LDIEDCCG 168 (413)
T ss_pred cccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCC
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHH---HHHHHHHhCCCHHHHHHHHhhCCCCCch--------hHHHHHHHH
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLN---TMITVYSSCGRIEDAKHIFRTMPNKSLI--------SWNSMIVGL 344 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~ 344 (686)
...+...+..|+.+-+..+++.-..++..... +.+...+..|+.+-+.-+++.-..++.. +.-.++.-+
T Consensus 169 ~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~ 248 (413)
T PHA02875 169 CTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNM 248 (413)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhh
Q ss_pred HhCCChhhHHHHHHHHH
Q 005642 345 SQNGSPIEALDLFCNMN 361 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~ 361 (686)
+.....+....+.....
T Consensus 249 ~~~~~~~~~~~li~~i~ 265 (413)
T PHA02875 249 CTNLESEAIDALIADIA 265 (413)
T ss_pred cCCcccHHHHHHHHHHH
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.92 E-value=1.5e+02 Score=26.58 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
+-.|.+.|.+++|.+++++..+ +|++...-..|+.+-.+...+....+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 4457777777777777777777 66555444444544444444444444
No 432
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.82 E-value=3.9e+02 Score=26.35 Aligned_cols=146 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCCChhhHHHHH-HHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI-SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 223 (686)
.++..-.+..+...-++.-....+-|...-.+++ -+=...--+-+|+++|++..+....+|+ ++.+...--.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~yr-------~sqq~qh~~~ 261 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGETIYR-------QSQQCQHQSP 261 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHh-------hHHHHhhhcc
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHH-HHHHHHHHHHhcCChhHHHHHHHh
Q 005642 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFSE 297 (686)
Q Consensus 224 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 297 (686)
..+.+.+++...-...-..+..+..+.|+..+|.+.++++.+.-.-.+.. +...|+.++....-+.+...++.+
T Consensus 262 ~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 262 QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 433
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.79 E-value=5.6e+02 Score=26.31 Aligned_cols=16 Identities=19% Similarity=0.088 Sum_probs=8.1
Q ss_pred cCChhHHHHHHHHHHc
Q 005642 518 HGDKGLGRKVAERMIE 533 (686)
Q Consensus 518 ~g~~~~A~~~~~~~~~ 533 (686)
.|+++.|...+-+++|
T Consensus 254 ~gryddAvarlYR~lE 269 (379)
T PF09670_consen 254 QGRYDDAVARLYRALE 269 (379)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555544444444
No 434
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=31.62 E-value=4.6e+02 Score=26.97 Aligned_cols=55 Identities=5% Similarity=-0.040 Sum_probs=37.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHH--HHHHHHHHHH--ccCChhhHHHHHHHHHHc
Q 005642 211 GYISNNEDTEALLLFHKMRRNGVLEDAS--TLASVLSACS--SLGFLEHGKQVHGHACKV 266 (686)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 266 (686)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444778888999999888876 565554 3444445544 445677788877776654
No 435
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.60 E-value=3.9e+02 Score=24.06 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=8.7
Q ss_pred HHHhcCChHHHHHHHHhC
Q 005642 482 LFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~ 499 (686)
.|.+.|.+++|.+++++.
T Consensus 120 VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 120 VCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHhcCchHHHHHHHHHH
Confidence 344445555555554444
No 436
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.32 E-value=2.8e+02 Score=23.80 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=45.0
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCh
Q 005642 190 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253 (686)
Q Consensus 190 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 253 (686)
+.+.+++-.-+-+.....++..+.+.++.-.|.++|+++.+.+...+..|.-..++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3444443332334556778888888888899999999999987777777776677777666543
No 437
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.17 E-value=96 Score=30.17 Aligned_cols=76 Identities=9% Similarity=0.138 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSS-ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
|+..|...+.-..+.|.+.+.-.+|.++ ...| ++..|-. --.-+...++++.+..++.+.+.++|+++..|.....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 6666666666556667777777777666 3334 5555543 2334567889999999999999999999888766543
No 438
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=30.98 E-value=1.3e+02 Score=18.49 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcCCcchHHHH
Q 005642 542 YIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~ 561 (686)
+..++-.+...|++++|+.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34445555555555555555
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.96 E-value=1.5e+02 Score=28.19 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQMP--------FEADVGMWSSILRGCVAHGDKGLGRKVAER 530 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 530 (686)
....+..-|.+.|++++|.++|+.+. ..+...+...+..++...|+.+......-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33456666777777777777777661 112233344455555566666655544433
No 440
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=30.75 E-value=1.2e+02 Score=22.83 Aligned_cols=45 Identities=7% Similarity=0.046 Sum_probs=32.5
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHH---HHHHHHhhcCCcchHHHH
Q 005642 517 AHGDKGLGRKVAERMIELDPENACAYI---QLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~ 561 (686)
...+.+.|+..++++++..++.+.-+. .++.+|++.|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888886665544444 455677788888888776
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.86 E-value=67 Score=35.89 Aligned_cols=48 Identities=15% Similarity=0.321 Sum_probs=33.5
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 483 FARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
....|+++.|++.-.++. |..+|..|+.....+|+.+-|+..|++...
T Consensus 653 aLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 345677777777766653 667777777777777777777777776654
No 442
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.74 E-value=94 Score=30.24 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 373 (686)
-|+..|....+.||+++|+.++++..+.|..--..||.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 35677777777777777777777777777654444443
No 443
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.34 E-value=38 Score=31.50 Aligned_cols=73 Identities=14% Similarity=0.035 Sum_probs=53.2
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccceeeccccceeehh
Q 005642 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDT 591 (686)
Q Consensus 515 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (686)
|-...++..|+..|.+++-++|..+..|..-+-.+.+..+|+.+..=.+..++ .+|.........+.++.+..
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq----l~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ----LDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh----cChHHHHHHHHHHHHHHhhc
Confidence 44556788999999999999999888889999999999999999987775554 34443333333344444433
No 444
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.33 E-value=7.1e+02 Score=26.41 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=54.5
Q ss_pred HHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 005642 191 RRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 266 (686)
Q Consensus 191 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 266 (686)
..+|++... .|+..|...+.-+-+.+.+.+.-.+|.+|+.. +-.||...+... .-+....+++.|+.++..-++.
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhhc
Confidence 444544432 37889999998888888899999999999885 233344333221 1223333489999999888886
Q ss_pred CCCchHHHHHHH
Q 005642 267 GVIDDVIVASAL 278 (686)
Q Consensus 267 g~~~~~~~~~~l 278 (686)
+ +.++..|...
T Consensus 170 n-pdsp~Lw~ey 180 (568)
T KOG2396|consen 170 N-PDSPKLWKEY 180 (568)
T ss_pred C-CCChHHHHHH
Confidence 4 2244444433
No 445
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.17 E-value=1.7e+02 Score=22.66 Aligned_cols=30 Identities=0% Similarity=0.059 Sum_probs=16.6
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 005642 185 GKMNDARRVFDRTTDTSSVMWNSMISGYIS 214 (686)
Q Consensus 185 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 214 (686)
-+.+.+..+++.++.+++.+|..+..++-.
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 344555555555555555566665555544
No 446
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.76 E-value=5.7e+02 Score=25.14 Aligned_cols=85 Identities=11% Similarity=-0.047 Sum_probs=60.6
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----------cCChhHH
Q 005642 222 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----------RGMPSDA 291 (686)
Q Consensus 222 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----------~g~~~~A 291 (686)
.++++.|.+.++.|.-.+|..+.-.+.+.=.+..+..+|+.+.... .-+..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4688888889999999999888888888888999999999987643 224444444443 5788888
Q ss_pred HHHHHhcccCCchhHHHHHH
Q 005642 292 CKLFSELKVYDTILLNTMIT 311 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~li~ 311 (686)
.++++.-..-|....-.+..
T Consensus 338 mkLLQ~yp~tdi~~~l~~A~ 357 (370)
T KOG4567|consen 338 MKLLQNYPTTDISKMLAVAD 357 (370)
T ss_pred HHHHhcCCCCCHHHHHHHHH
Confidence 88877655555544443333
No 447
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=28.56 E-value=1.8e+02 Score=22.59 Aligned_cols=29 Identities=7% Similarity=0.275 Sum_probs=14.3
Q ss_pred CHHHHHHHHhhCCCCCchhHHHHHHHHHh
Q 005642 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQ 346 (686)
Q Consensus 318 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 346 (686)
+.+++.++++.++.+++.+|..+..++..
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 33444444445555555555555555543
No 448
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=28.56 E-value=6.7e+02 Score=25.86 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=10.6
Q ss_pred CChHHHHHHHHHHHHhCCCcc
Q 005642 383 SSLELGEQVFARVTIIGLDSD 403 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~ 403 (686)
.+.+.|+-++.+|++.|-.|.
T Consensus 263 SD~dAALyylARmi~~GeDp~ 283 (436)
T COG2256 263 SDPDAALYYLARMIEAGEDPL 283 (436)
T ss_pred CCcCHHHHHHHHHHhcCCCHH
Confidence 345555555555555554443
No 449
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.50 E-value=2.7e+02 Score=24.63 Aligned_cols=60 Identities=13% Similarity=-0.033 Sum_probs=30.9
Q ss_pred HHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 005642 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 229 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
++.|+.++..-. .++..+...++.-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344555444433 233333333445556666666666665555555445556666665543
No 450
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.07 E-value=5.9e+02 Score=24.72 Aligned_cols=193 Identities=7% Similarity=0.020 Sum_probs=89.0
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHccCChHHHHHHHHH----HHHhCCCcchhHHHH
Q 005642 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL-------ASVISACANISSLELGEQVFAR----VTIIGLDSDQIISTS 409 (686)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~ 409 (686)
..-..+.+++++|+..|.++...|+..|..+. ..+...|...|+...-.+.... |.+..-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 34445566777777777777777666655433 3445555666655443333322 222222233445555
Q ss_pred HHHHHHhchh---HHHHHHHHHH----HCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCCCChhH-HH
Q 005642 410 LVDFYCKCGY---DALALFNEMR----NTGVK-PTIITFTAILSACDHCGLVKEGQKWFDAMKW---QYHIDPEIEH-YS 477 (686)
Q Consensus 410 li~~~~~~~~---~A~~~~~~m~----~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~~~-~~ 477 (686)
|++.+....+ .-+.+..... +..-+ .-...-.-++..+.+.|.+.+|+.+...+.. +..-+|+..+ +.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 5555544443 1112211111 11000 0011223466677888888888877665542 2333443221 11
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------CCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHc
Q 005642 478 CMVDLFARAGCLNEAVNLIEQMP-------FEADVGMWSSILRG--CVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~ 533 (686)
.=-.+|..-.++.++..-+...+ .+|....---++.+ .+...++..|...|-++.+
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 12233444444444444333321 33333322223333 2344566777666666665
No 451
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.70 E-value=7e+02 Score=25.43 Aligned_cols=57 Identities=18% Similarity=0.064 Sum_probs=40.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHH
Q 005642 340 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA-NISSLELGEQVFARVT 396 (686)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~ 396 (686)
-|..+.+.|-+..|+++.+-+......-|+......|+.++ +.++++--.++.+...
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 35567788889999988888887655556666667777765 6677777766666543
No 452
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=26.57 E-value=1.1e+02 Score=29.77 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=42.6
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA 503 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 503 (686)
..+.|+.++|..+|+... .+.| ++..+.-++.......++-+|-+.|-+. .+.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 357899999999999987 4667 5778878887777788888888888766 4555
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.26 E-value=3.3e+02 Score=24.11 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 383 (686)
...-..++..+...++.-.|.++++.+.+.+..++..|....|..+...|
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33344555555555666677777777777766666666555555555554
No 454
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.04 E-value=3.4e+02 Score=27.99 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=35.5
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCC-----------CCCchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 308 TMITVYSSCGRIEDAKHIFRTMP-----------NKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 308 ~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
.|++..+-.|++..|+++++.+. .-.+.++-.+.-+|...+++.+|.+.|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666655543 2244567777778888888888888887654
No 455
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=25.97 E-value=5.6e+02 Score=24.09 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=19.3
Q ss_pred HHHccCChHHHHHHHHHHHHhCCC
Q 005642 378 ACANISSLELGEQVFARVTIIGLD 401 (686)
Q Consensus 378 ~~~~~~~~~~a~~~~~~~~~~~~~ 401 (686)
=+...|+++.|+++-..+++.|.+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCC
Confidence 456778999999998888888765
No 456
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.84 E-value=8.7e+02 Score=26.30 Aligned_cols=88 Identities=14% Similarity=0.229 Sum_probs=49.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHH-hcCChHHHHHHHHhCC------CCCCHHHHHHHHHHHH
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQYHIDP--EIEHYSCMVDLFA-RAGCLNEAVNLIEQMP------FEADVGMWSSILRGCV 516 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~------~~p~~~~~~~li~~~~ 516 (686)
...+.|=+..|+++.+.+. .+.| |+.....+++.|+ ++.+++--+++++..+ .-|+..--.++...|.
T Consensus 351 ~l~~RGC~rTA~E~cKlll---sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l 427 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLL---SLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFL 427 (665)
T ss_pred HHHhcCChHHHHHHHHHHh---hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHH
Confidence 4556677777777777666 3444 4555566666664 5666766666666552 3344433334444444
Q ss_pred hcCC---hhHHHHHHHHHHccCC
Q 005642 517 AHGD---KGLGRKVAERMIELDP 536 (686)
Q Consensus 517 ~~g~---~~~A~~~~~~~~~~~p 536 (686)
+... -+.|...+.+++...|
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hcCChhhHHHHHHHHHHHHHhCc
Confidence 4433 3455555555555433
No 457
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=25.80 E-value=5.7e+02 Score=24.14 Aligned_cols=59 Identities=7% Similarity=0.003 Sum_probs=38.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHHH
Q 005642 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA-NISSLELGEQVFARVTI 397 (686)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~ 397 (686)
.++..+-+.|+++++...++++...+...+..--+.+-.+|- ..|....+.+++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 456667788999999999999988877777665555555553 33555666666665544
No 458
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.14 E-value=1.6e+02 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=16.1
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHH
Q 005642 240 LASVLSACSSLGFLEHGKQVHGHACK 265 (686)
Q Consensus 240 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 265 (686)
-..++.++...|++++|.++++.+.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34466667777777777776666554
No 459
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.12 E-value=4.4e+02 Score=22.59 Aligned_cols=61 Identities=10% Similarity=0.190 Sum_probs=37.0
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcc-CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 227 KMRRNGVLEDASTLASVLSACSSL-GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 227 ~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455666555443 234444433 45667888888888777666666655566666666654
No 460
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.51 E-value=1.3e+02 Score=24.96 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhcc
Q 005642 22 HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66 (686)
Q Consensus 22 ~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 66 (686)
++...++..|.+.|+.......|..-...+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
No 461
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.02 E-value=8.1e+02 Score=25.25 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCCC------CCchhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 305 LLNTMITVYSSCGRIEDAKHIFRTMPN------KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 305 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
.+.-+..-|...|+++.|.+.+.+..+ .-+..|-.+|..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 566777888888888888888888554 1224556666666667777777777776655
No 462
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=23.99 E-value=2.8e+02 Score=21.26 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=11.6
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHH
Q 005642 187 MNDARRVFDRTTDTSSVMWNSMISGYI 213 (686)
Q Consensus 187 ~~~A~~~~~~~~~~~~~~~~~li~~~~ 213 (686)
.++|..+++.++.++..+|..+..++-
T Consensus 44 ~~qa~~Lld~L~trG~~Af~~F~~aL~ 70 (86)
T cd08323 44 KEKAVMLINMILTKDNHAYVSFYNALL 70 (86)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 463
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.95 E-value=7.3e+02 Score=24.73 Aligned_cols=138 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHhCCC------------hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 005642 333 SLISWNSMIVGLSQNGS------------PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 400 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 400 (686)
|+.+|-.++..--..-. .+.-+.++++..+. .+-+.......+..+.+..+.+...+.++.++...
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Q ss_pred CcchhHHHHHHHHHHhchh------------HHHHHHHHHHHCC----------CCCCHHHHHHHHHHHhccCCHHHHHH
Q 005642 401 DSDQIISTSLVDFYCKCGY------------DALALFNEMRNTG----------VKPTIITFTAILSACDHCGLVKEGQK 458 (686)
Q Consensus 401 ~~~~~~~~~li~~~~~~~~------------~A~~~~~~m~~~~----------~~p~~~~~~~ll~~~~~~g~~~~A~~ 458 (686)
+.+...|...++.....-. ++++.+....... -.--...|..+...+.+.|-.+.|..
T Consensus 96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Q ss_pred HHHHHHHhcCCCCC
Q 005642 459 WFDAMKWQYHIDPE 472 (686)
Q Consensus 459 ~~~~~~~~~~~~p~ 472 (686)
+++.+.+-.-..|.
T Consensus 176 ~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 176 LWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHcCCcc
No 464
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.91 E-value=4.3e+02 Score=27.66 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC
Q 005642 120 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 168 (686)
Q Consensus 120 ~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (686)
.+++-..+++.+.+.| . ......-++.|.+.+++++|...+++-.+
T Consensus 69 ~~~e~i~lL~~l~~~g-~--ad~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-G--ADFLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHcc-C--CCccceeeecccccccHHHHHHHHHhhhh
Confidence 3455555666666654 1 22445567788888888888888876543
No 465
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.77 E-value=2.1e+02 Score=20.55 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=32.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 005642 200 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 248 (686)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 248 (686)
+....++.++...++..-.++++..+.++.+.|. .+..+|..-.+.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4456677788888887778888888888888774 45555555555444
No 466
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=23.61 E-value=1.2e+03 Score=27.30 Aligned_cols=171 Identities=11% Similarity=-0.074 Sum_probs=80.6
Q ss_pred CHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCcCH--------HHHHHHHHHHHccCC
Q 005642 186 KMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLEDA--------STLASVLSACSSLGF 252 (686)
Q Consensus 186 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~--------~~~~~ll~~~~~~~~ 252 (686)
..---.++|++..+ ++..+........+..|.++-+.+....+.+. ..+.+. ..|..-+.+.....+
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (932)
T PRK13184 671 FTPFLPELFQRAWDLRDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKED 750 (932)
T ss_pred CchhhHHHHHHHhhcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHcccc
Confidence 33333445554433 34444455555556777777665555544421 011111 113333445555555
Q ss_pred hhhHHHHHHHHHHcCCCchHHH--HHHHHHHHHhcCChhHHHHHHHhcc---cCC---chhHHHHHHHHHhCCCHHHHHH
Q 005642 253 LEHGKQVHGHACKVGVIDDVIV--ASALLDTYSKRGMPSDACKLFSELK---VYD---TILLNTMITVYSSCGRIEDAKH 324 (686)
Q Consensus 253 ~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~g~~~~A~~ 324 (686)
++++.+.+.. .+|.... +..++.-..-.++.+....+.+.+. .+. ......-|.+|.-..++++|-+
T Consensus 751 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (932)
T PRK13184 751 YEKAFKHLDN-----TDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYK 825 (932)
T ss_pred HHHHHhhhhh-----CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHH
Confidence 5555543332 2333332 2333333333344444444433333 221 2233455677777888888888
Q ss_pred HHhhCCCC-----CchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 325 IFRTMPNK-----SLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 325 ~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
++..-... ....+-....-++-.++-+.|..-|.--.
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 826 LLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 88666542 22233333333445566666665555544
No 467
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.29 E-value=6.7e+02 Score=24.07 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC------------CC---chhHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCCHHH
Q 005642 308 TMITVYSSCGRIEDAKHIFRTMPN------------KS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFS 371 (686)
Q Consensus 308 ~li~~~~~~g~~~~A~~~~~~~~~------------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t 371 (686)
.|...|...+.+.+-.+++.++.. +. ...|..-|..|....+-.+--.+|++..... --|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 445555555555555555554421 11 1356666777777777666667777665432 2344433
Q ss_pred HHHHHHHH-----HccCChHHHHHHHH
Q 005642 372 LASVISAC-----ANISSLELGEQVFA 393 (686)
Q Consensus 372 ~~~ll~~~-----~~~~~~~~a~~~~~ 393 (686)
. .+|+-| .+.|.+++|..-|=
T Consensus 230 m-GvIRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 230 M-GVIRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred H-hHHHHcCCccccccchHHHHHhHHH
Confidence 3 334444 35567776654433
No 468
>PF13934 ELYS: Nuclear pore complex assembly
Probab=23.02 E-value=6.3e+02 Score=23.65 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=10.5
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 005642 479 MVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~ 499 (686)
++.++...|+.+.|..+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444455555555555554
No 469
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=1.2e+03 Score=27.01 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM----PFEADVGMWSSILRGCVAHGD 520 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~ 520 (686)
|..++..-..-+...|++-.+.+++.++ ...++...|..++..+...|-
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 3344444444444455555555554444 234444555555555555553
No 470
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.57 E-value=8.2e+02 Score=25.20 Aligned_cols=141 Identities=15% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005642 431 TGVKPTIITFTAILSACDHC--GLVKEGQKWFDAMKWQYHIDP-------EIEHYSCMVDLFARAGCLNEAVNLIEQM-- 499 (686)
Q Consensus 431 ~~~~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 499 (686)
..+.+....|..++-...-- .++.+|..+-+.......... ...+|..+-..|...|+...-..++...
T Consensus 118 k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr 197 (493)
T KOG2581|consen 118 KPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR 197 (493)
T ss_pred CCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q ss_pred ------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----ccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 500 ------PFEADVGMWSSILRGCVAHGDKGLGRKVAERMI----ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 500 ------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.........|.+++.|...+.++.|..+..+.. ..+.+-+....-++.+..-+++|..|.+.+-....+.
T Consensus 198 tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 198 TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Q ss_pred CC
Q 005642 570 VG 571 (686)
Q Consensus 570 ~~ 571 (686)
++
T Consensus 278 pq 279 (493)
T KOG2581|consen 278 PQ 279 (493)
T ss_pred cc
No 471
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.48 E-value=1e+03 Score=25.85 Aligned_cols=96 Identities=9% Similarity=0.015 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH-------HCCC------------Cc-CHHHHHHHH---HHHHccCChhhHHHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMR-------RNGV------------LE-DASTLASVL---SACSSLGFLEHGKQVH 260 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~g~------------~p-~~~~~~~ll---~~~~~~~~~~~a~~~~ 260 (686)
+.-.+...+..+|+.+.|-++..+.+ .-.+ .| |...|..+. ..+.+.|-+..|.++.
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 34455566778888777666655542 2112 12 333344433 3345778888888888
Q ss_pred HHHHHcCCCchHHHHHHHHHHHH-hcCChhHHHHHHHhcc
Q 005642 261 GHACKVGVIDDVIVASALLDTYS-KRGMPSDACKLFSELK 299 (686)
Q Consensus 261 ~~~~~~g~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 299 (686)
+.+.+....-|+.....+|+.|+ +..+++--+++++...
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888765556777777787775 6677777777777553
No 472
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=22.37 E-value=1.1e+02 Score=29.88 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH-HHHHHhhcCCcchHHHHHHHHHh
Q 005642 501 FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ-LSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 501 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
...|+..|...+.-..+.|-+.+...++.+++..+|.+...|.. -..=+...++++.++.++..-.+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR 170 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR 170 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence 33467778777776677788888899999999999999888765 44456778999999988884443
No 473
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=22.31 E-value=8.7e+02 Score=25.31 Aligned_cols=192 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhc-----------------------------ChhhHHHHH
Q 005642 76 NAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKA-----------------------------DLAALEYGK 125 (686)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~-----------------------------~~~~~~~a~ 125 (686)
..+..-+...|.++.|.+++++=.- .|-..+..++...-.. .....-...
T Consensus 122 S~laadhvAAGsFetAm~LLnrQiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l 201 (422)
T PF06957_consen 122 SSLAADHVAAGSFETAMQLLNRQIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSL 201 (422)
T ss_dssp --SHHHHHHCT-HHHHHHHHHHHC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----H
T ss_pred CCcHHHHHHhCCHHHHHHHHHHHhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcCCH
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhH
Q 005642 126 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 205 (686)
Q Consensus 126 ~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 205 (686)
..+...++.|++ +...|++.+|+..|+. ..+...+.......+.+++.+++.. ..-|
T Consensus 202 ~~L~~~Lk~gyk------------~~t~gKF~eA~~~Fr~------iL~~i~l~vv~~~~E~~e~~eli~i-----crEY 258 (422)
T PF06957_consen 202 SSLEERLKEGYK------------LFTAGKFEEAIEIFRS------ILHSIPLLVVESREEEDEAKELIEI-----CREY 258 (422)
T ss_dssp HHHHHHHHHHHH------------HHHTT-HHHHHHHHHH------HHHHHHC--BSSCHHHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHH------------HHhcCCHHHHHHHHHH------HHHHhheeeecCHHHHHHHHHHHHH-----HHHH
Q ss_pred HHHHHHHHhcCCh--------hHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHH
Q 005642 206 NSMISGYISNNED--------TEALLLFHKMRRNGVLEDAS--TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 275 (686)
Q Consensus 206 ~~li~~~~~~g~~--------~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 275 (686)
..-++.=...... ...+++---+-.-.+.|... ++.+-|..+.+.+++..|..+-+++++.+..++...-
T Consensus 259 ilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 259 ILGLSIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp HHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Q ss_pred HHHHHHHHhcCChhH
Q 005642 276 SALLDTYSKRGMPSD 290 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~ 290 (686)
..-+-.-+...-.+.
T Consensus 339 ArKil~~~e~~~tDa 353 (422)
T PF06957_consen 339 ARKILQACERNPTDA 353 (422)
T ss_dssp HHHHHHHHCCS--BS
T ss_pred HHHHHHHHhcCCCCc
No 474
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=22.16 E-value=1.9e+02 Score=29.50 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=12.9
Q ss_pred HHHHHHHhcCChHHHHHHHHh
Q 005642 478 CMVDLFARAGCLNEAVNLIEQ 498 (686)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~ 498 (686)
-|+-+|.+.++.+-|+.-..+
T Consensus 233 klv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhh
Confidence 455567777777776654443
No 475
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.87 E-value=6.8e+02 Score=23.62 Aligned_cols=41 Identities=2% Similarity=-0.146 Sum_probs=24.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 247 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 247 (686)
.++...-+.++++++++.++++...+...+..--+.+-.+|
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 34566667778888888888877776555555554444444
No 476
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=21.62 E-value=8.9e+02 Score=24.85 Aligned_cols=54 Identities=6% Similarity=-0.084 Sum_probs=37.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHH--hcCChHHHHHHHHhC
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDPEI----EHYSCMVDLFA--RAGCLNEAVNLIEQM 499 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~--~~g~~~~A~~~~~~~ 499 (686)
..+.+.+++..|.++|+++.. ...+|+. ..|..+..+|. ..-++++|.+.++++
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~-r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLR-RLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHh-cccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 345678899999999999984 3544432 34455555554 356788999999874
No 477
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.61 E-value=9.3e+02 Score=25.08 Aligned_cols=187 Identities=12% Similarity=0.020 Sum_probs=73.7
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc
Q 005642 191 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 270 (686)
Q Consensus 191 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 270 (686)
..+.+.+..++.......+.++...+..+-. ..+..+.+. ++.......+.++...+. + +...+...++ .+
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~-~~L~~~L~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~ 159 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGRQAE-PWLEPLLAA---SEPPGRAIGLAALGAHRH-D-PGPALEAALT---HE 159 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCchHHH-HHHHHHhcC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CC
Confidence 3344444444454555566665555543333 333333322 222233333344433221 1 1222222222 23
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhh-CCCCCchhHHHHHHHHHhCCC
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT-MPNKSLISWNSMIVGLSQNGS 349 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 349 (686)
+..+-..-+.++...+..+..-.+..-....|...-..-+.+....|. .+|...+.. ...++....-.+...+...|
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~- 237 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG- 237 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCC-
Confidence 444444444555544443222222222223444444444444455554 333333333 33333333333333332222
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 005642 350 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393 (686)
Q Consensus 350 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 393 (686)
..++...+..+.+. + .+-...+.++.+.|+...+..+.+
T Consensus 238 ~~~a~~~L~~ll~d---~--~vr~~a~~AlG~lg~p~av~~L~~ 276 (410)
T TIGR02270 238 GPDAQAWLRELLQA---A--ATRREALRAVGLVGDVEAAPWCLE 276 (410)
T ss_pred chhHHHHHHHHhcC---h--hhHHHHHHHHHHcCCcchHHHHHH
Confidence 22444444444432 1 133444445555555544433333
No 478
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=21.55 E-value=5.1e+02 Score=22.05 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=14.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHH
Q 005642 443 ILSACDHCGLVKEGQKWFDAMK 464 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~ 464 (686)
|.-++.+.+++++++++.+.+.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHH
Confidence 3446666677777777766665
No 479
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=20.90 E-value=3.9e+02 Score=20.51 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 258 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 258 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
++|+.....|+..|+.+|..+++...-+=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666666666666666655555555555555443
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.90 E-value=3.7e+02 Score=30.56 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGC 515 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~ 515 (686)
+..+|..|...-...|+.+-|+..|+... .|..|.-.|.-.|+.++-.++.+......|..+ .....
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~k----------nfekLsfLYliTgn~eKL~Km~~iae~r~D~~~---~~qna 737 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTK----------NFEKLSFLYLITGNLEKLSKMMKIAEIRNDATG---QFQNA 737 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhh----------hhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHH---HHHHH
Confidence 66777788877777888888877777655 123333345556777776666665544444333 11112
Q ss_pred HhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 516 VAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
.-.|++++-..+++..-. -+-+|.. -...|.-++|.++..+...+.+
T Consensus 738 lYl~dv~ervkIl~n~g~----~~laylt----a~~~G~~~~ae~l~ee~~~~~~ 784 (1202)
T KOG0292|consen 738 LYLGDVKERVKILENGGQ----LPLAYLT----AAAHGLEDQAEKLGEELEKQVP 784 (1202)
T ss_pred HHhccHHHHHHHHHhcCc----ccHHHHH----HhhcCcHHHHHHHHHhhccccC
Confidence 235666665554443221 1122221 2345767777777776665444
No 481
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.90 E-value=6.8e+02 Score=23.22 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=10.1
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 005642 446 ACDHCGLVKEGQKWFDAMK 464 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~ 464 (686)
...+.|+.++|.+.|..+.
T Consensus 174 L~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 174 LNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444555555555555555
No 482
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=20.76 E-value=3.7e+02 Score=20.66 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=11.6
Q ss_pred HHHHHHHhhCCCCCchhHHHHHHHHHh
Q 005642 320 EDAKHIFRTMPNKSLISWNSMIVGLSQ 346 (686)
Q Consensus 320 ~~A~~~~~~~~~~~~~~~~~li~~~~~ 346 (686)
++|..+++.++.+++.+|..+..++-.
T Consensus 45 ~qa~~Lld~L~trG~~Af~~F~~aL~~ 71 (86)
T cd08323 45 EKAVMLINMILTKDNHAYVSFYNALLH 71 (86)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 333334444444444444444444433
No 483
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=20.47 E-value=8e+02 Score=23.88 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=23.4
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 005642 341 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 393 (686)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 393 (686)
|.+++..+++.+++...-+--+.--+........-|-.|.+.+.+..+.++-.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~ 142 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVAS 142 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45566666666665544333222111122222333333555555555554444
No 484
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.36 E-value=5.6e+02 Score=23.31 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC------CCcchHHHHHH-HHHhcChhhHHHHHHHHHHHHHcC------C
Q 005642 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSWNMLIS-GFAKADLAALEYGKQIHSHILVNG------L 136 (686)
Q Consensus 70 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~ll~-~~~~~~~~~~~~a~~i~~~~~~~g------~ 136 (686)
+.+.-+...+-...+.|++++|..-++++.+ .-...|..+.. +++..+...+..|..++..+...+ +
T Consensus 27 Rei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL 106 (204)
T COG2178 27 REIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEEL 106 (204)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHc
Q ss_pred CCChhHH-----------HHHHHHHHhcCChHHHHHHHhcc
Q 005642 137 DFDSVLG-----------SSLVNLYGKCGDFNSANQVLNMM 166 (686)
Q Consensus 137 ~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~ 166 (686)
..++..| ...+.-..+.|+++.|.+.++-|
T Consensus 107 ~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~M 147 (204)
T COG2178 107 GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFM 147 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
No 485
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.33 E-value=2e+02 Score=23.12 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=11.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 005642 207 SMISGYISNNEDTEALLLFHKM 228 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m 228 (686)
.++..|...|+.++|...++++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3445555556666666666554
No 486
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=20.33 E-value=7.4e+02 Score=23.41 Aligned_cols=104 Identities=11% Similarity=0.180 Sum_probs=58.3
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHH
Q 005642 127 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 206 (686)
Q Consensus 127 i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 206 (686)
+.+-....++.-+..-..+++ +...||+..|+..++.-.. .--+-.+..+|+-..+|.+....
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~---------------g~g~Vn~enVfKv~d~PhP~~v~ 243 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVN---------------GFGLVNQENVFKVCDEPHPLLVK 243 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhc---------------cccccchhhhhhccCCCChHHHH
Confidence 333333444444444444433 3455777766666554331 00111234455555567777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 249 (686)
.++..+ ..+++++|.+.+.++-+.|..|... .+++++.+-.
T Consensus 244 ~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K~ 284 (333)
T KOG0991|consen 244 KMLQAC-LKRNIDEALKILAELWKLGYSPEDI-ITTLFRVVKN 284 (333)
T ss_pred HHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHh
Confidence 777655 4567889999999988888877543 3445555433
Done!