Query 005642
Match_columns 686
No_of_seqs 723 out of 3355
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 03:19:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.6E-40 3.3E-44 359.6 36.6 477 50-569 62-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.7E-38 3E-42 344.0 36.2 473 38-551 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-25 9.4E-30 230.1 41.2 370 146-554 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 7.1E-25 2.4E-29 227.0 40.4 350 179-568 7-368 (388)
5 4g26_A Pentatricopeptide repea 99.9 4.3E-26 1.5E-30 240.2 22.1 213 220-486 8-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.1E-25 3.9E-30 237.0 22.4 190 203-419 27-225 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.4E-22 8.3E-27 216.2 30.7 422 141-569 7-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 5.1E-21 1.7E-25 202.2 35.5 334 203-564 27-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.2E-20 4E-25 203.1 36.1 238 273-545 238-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 4.8E-21 1.6E-25 207.4 29.5 415 140-569 25-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 4.2E-20 1.4E-24 195.2 31.4 308 221-568 11-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.7E-19 5.6E-24 195.3 34.8 422 6-499 26-488 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 7.4E-18 2.5E-22 171.8 34.2 334 173-552 5-353 (359)
14 1xi4_A Clathrin heavy chain; a 99.8 8.2E-16 2.8E-20 171.1 51.1 414 45-500 989-1443(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 2.2E-17 7.4E-22 168.3 31.7 309 201-568 2-335 (359)
16 2xm6_A Protein corresponding t 99.8 3.1E-16 1.1E-20 167.2 38.8 362 139-549 38-450 (490)
17 3hym_B Cell division cycle pro 99.8 3.3E-17 1.1E-21 164.9 28.0 290 201-555 21-321 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 5.3E-15 1.8E-19 164.7 44.6 441 75-568 988-1458(1630)
19 1b89_A Protein (clathrin heavy 99.8 7.6E-17 2.6E-21 161.5 26.9 278 52-356 14-304 (449)
20 1b89_A Protein (clathrin heavy 99.8 1.6E-17 5.4E-22 166.4 20.5 286 152-499 15-308 (449)
21 3hym_B Cell division cycle pro 99.8 1.2E-16 4.2E-21 160.7 27.0 259 271-567 21-298 (330)
22 2xm6_A Protein corresponding t 99.8 5.1E-15 1.7E-19 157.8 39.7 354 169-570 37-434 (490)
23 4g1t_A Interferon-induced prot 99.8 7.2E-16 2.5E-20 163.7 33.0 382 171-579 51-470 (472)
24 2ooe_A Cleavage stimulation fa 99.7 1E-14 3.4E-19 157.1 40.2 408 137-569 10-493 (530)
25 2ooe_A Cleavage stimulation fa 99.7 8.7E-15 3E-19 157.6 39.6 401 102-537 12-495 (530)
26 1fch_A Peroxisomal targeting s 99.7 1.7E-16 5.9E-21 162.4 23.9 273 286-563 39-354 (368)
27 1fch_A Peroxisomal targeting s 99.7 9.2E-16 3.1E-20 157.0 24.4 297 182-533 36-358 (368)
28 3mkr_A Coatomer subunit epsilo 99.7 4E-15 1.4E-19 146.1 27.3 246 281-568 8-264 (291)
29 4eqf_A PEX5-related protein; a 99.7 4.6E-16 1.6E-20 159.2 20.8 258 303-563 65-351 (365)
30 4eqf_A PEX5-related protein; a 99.7 1.7E-15 5.7E-20 155.0 20.7 272 201-532 64-354 (365)
31 4g1t_A Interferon-induced prot 99.7 4.6E-15 1.6E-19 157.5 24.7 378 137-546 48-471 (472)
32 3cv0_A Peroxisome targeting si 99.7 3.3E-15 1.1E-19 149.9 20.7 266 273-565 22-312 (327)
33 3mkr_A Coatomer subunit epsilo 99.7 1.2E-14 4.1E-19 142.7 23.7 271 209-560 6-286 (291)
34 3cv0_A Peroxisome targeting si 99.6 2.6E-14 8.8E-19 143.4 23.5 278 202-536 21-317 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.6 2.6E-16 8.9E-21 169.9 6.5 147 335-487 128-286 (1134)
36 3e4b_A ALGK; tetratricopeptide 99.6 5.3E-13 1.8E-17 139.9 28.0 270 252-570 89-389 (452)
37 3spa_A Mtrpol, DNA-directed RN 99.6 1.4E-15 4.6E-20 164.4 8.3 146 172-317 128-286 (1134)
38 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.5E-18 129.1 20.7 196 333-566 4-212 (217)
39 3uq3_A Heat shock protein STI1 99.6 2.1E-13 7E-18 131.5 21.9 220 336-569 7-237 (258)
40 3e4b_A ALGK; tetratricopeptide 99.5 2.4E-13 8.2E-18 142.5 20.3 368 146-567 9-420 (452)
41 1ouv_A Conserved hypothetical 99.5 3.1E-12 1.1E-16 124.7 26.0 217 309-570 12-253 (273)
42 3uq3_A Heat shock protein STI1 99.5 1.9E-12 6.3E-17 124.7 23.5 239 239-548 7-256 (258)
43 3u4t_A TPR repeat-containing p 99.5 5.5E-13 1.9E-17 129.8 19.5 179 337-553 77-269 (272)
44 2h6f_A Protein farnesyltransfe 99.5 1.5E-12 5.2E-17 132.1 21.3 240 275-552 100-366 (382)
45 2ho1_A Type 4 fimbrial biogene 99.5 6.2E-12 2.1E-16 120.7 24.2 200 334-569 37-239 (252)
46 2pl2_A Hypothetical conserved 99.5 1.3E-12 4.5E-17 122.2 16.8 189 137-328 2-210 (217)
47 2vq2_A PILW, putative fimbrial 99.5 1.2E-11 4.1E-16 116.2 23.1 199 334-568 8-211 (225)
48 1ouv_A Conserved hypothetical 99.5 1.8E-11 6.3E-16 119.1 24.8 227 236-539 5-256 (273)
49 4a1s_A PINS, partner of inscut 99.4 2.7E-12 9.1E-17 133.3 19.9 274 242-568 53-372 (411)
50 2q7f_A YRRB protein; TPR, prot 99.4 4.3E-12 1.5E-16 121.0 19.4 200 333-569 22-223 (243)
51 3sf4_A G-protein-signaling mod 99.4 1.1E-11 3.8E-16 128.3 23.9 280 236-568 8-336 (406)
52 3u4t_A TPR repeat-containing p 99.4 1E-11 3.6E-16 120.7 22.2 224 309-569 9-251 (272)
53 3sf4_A G-protein-signaling mod 99.4 2.2E-12 7.5E-17 133.6 18.3 302 202-557 9-365 (406)
54 2q7f_A YRRB protein; TPR, prot 99.4 2E-12 7E-17 123.3 16.7 211 306-553 26-241 (243)
55 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.8E-12 9.7E-17 124.9 17.9 177 119-299 19-204 (275)
56 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.4E-12 1.2E-16 124.3 18.1 238 283-562 16-269 (275)
57 2h6f_A Protein farnesyltransfe 99.4 9.1E-12 3.1E-16 126.4 20.6 225 336-567 99-347 (382)
58 2ho1_A Type 4 fimbrial biogene 99.4 1.5E-11 5E-16 118.1 21.1 207 272-543 37-247 (252)
59 3ro2_A PINS homolog, G-protein 99.4 6.3E-12 2.2E-16 126.1 18.7 273 243-568 11-332 (338)
60 2vq2_A PILW, putative fimbrial 99.4 2.4E-11 8.3E-16 114.1 20.5 211 271-545 7-222 (225)
61 3vtx_A MAMA; tetratricopeptide 99.4 3E-11 1E-15 109.7 19.1 166 368-569 4-171 (184)
62 3ulq_A Response regulator aspa 99.4 6E-11 2.1E-15 121.8 22.2 302 213-568 23-368 (383)
63 3ro2_A PINS homolog, G-protein 99.4 7.7E-11 2.6E-15 118.1 22.4 280 204-537 7-335 (338)
64 4a1s_A PINS, partner of inscut 99.3 7.1E-11 2.4E-15 122.5 22.2 280 204-536 50-374 (411)
65 4abn_A Tetratricopeptide repea 99.3 2E-11 7E-16 128.7 17.0 207 319-564 84-317 (474)
66 4e6h_A MRNA 3'-END-processing 99.3 3.1E-08 1.1E-12 107.3 40.5 214 322-539 328-575 (679)
67 3ulq_A Response regulator aspa 99.3 9.4E-11 3.2E-15 120.4 19.2 155 145-299 108-291 (383)
68 3vtx_A MAMA; tetratricopeptide 99.3 2.1E-10 7.1E-15 104.0 17.8 169 333-539 4-175 (184)
69 4gyw_A UDP-N-acetylglucosamine 99.3 1.1E-10 3.6E-15 128.2 18.6 163 369-568 9-174 (723)
70 3nf1_A KLC 1, kinesin light ch 99.3 1E-10 3.6E-15 115.9 16.8 234 335-568 28-307 (311)
71 4e6h_A MRNA 3'-END-processing 99.2 1.4E-08 4.9E-13 110.0 34.2 422 128-571 55-573 (679)
72 3nf1_A KLC 1, kinesin light ch 99.2 6.3E-11 2.2E-15 117.5 14.2 249 239-537 29-310 (311)
73 1hz4_A MALT regulatory protein 99.2 6.4E-09 2.2E-13 106.1 29.3 268 248-568 25-322 (373)
74 2ond_A Cleavage stimulation fa 99.2 3.2E-09 1.1E-13 105.1 25.5 212 320-570 33-272 (308)
75 4i17_A Hypothetical protein; T 99.2 9.2E-10 3.1E-14 103.7 20.2 205 333-549 6-224 (228)
76 2ond_A Cleavage stimulation fa 99.2 3.7E-09 1.3E-13 104.7 23.8 231 271-540 7-276 (308)
77 3q15_A PSP28, response regulat 99.2 8.1E-09 2.8E-13 105.6 27.0 203 335-567 142-364 (378)
78 3q15_A PSP28, response regulat 99.2 1.9E-09 6.5E-14 110.3 22.3 236 207-499 106-362 (378)
79 3as5_A MAMA; tetratricopeptide 99.2 5.7E-10 2E-14 100.9 15.6 132 436-569 41-174 (186)
80 1hz4_A MALT regulatory protein 99.2 4.5E-08 1.5E-12 99.8 31.6 278 205-536 17-324 (373)
81 4abn_A Tetratricopeptide repea 99.1 6.5E-10 2.2E-14 117.2 17.1 176 121-298 84-284 (474)
82 4i17_A Hypothetical protein; T 99.1 2E-09 6.8E-14 101.4 17.3 153 367-555 5-169 (228)
83 3edt_B KLC 2, kinesin light ch 99.1 9.9E-10 3.4E-14 107.0 14.7 235 283-567 12-280 (283)
84 1qqe_A Vesicular transport pro 99.1 6.5E-09 2.2E-13 101.9 18.5 180 335-543 78-278 (292)
85 4gyw_A UDP-N-acetylglucosamine 99.0 5.1E-10 1.7E-14 122.8 11.5 157 436-599 8-167 (723)
86 3as5_A MAMA; tetratricopeptide 99.0 1.9E-08 6.6E-13 90.6 19.5 92 203-296 43-134 (186)
87 3mv2_B Coatomer subunit epsilo 99.0 4.2E-08 1.4E-12 94.2 21.5 178 353-568 85-282 (310)
88 3edt_B KLC 2, kinesin light ch 99.0 2E-08 6.9E-13 97.5 18.2 237 249-535 13-282 (283)
89 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.8E-13 86.6 14.3 129 439-569 3-133 (136)
90 4ga2_A E3 SUMO-protein ligase 98.9 2.2E-09 7.7E-14 93.3 8.6 123 443-568 3-129 (150)
91 1qqe_A Vesicular transport pro 98.9 3.2E-08 1.1E-12 97.0 17.5 151 147-299 44-226 (292)
92 3qky_A Outer membrane assembly 98.9 7.2E-08 2.5E-12 92.7 18.5 174 332-540 13-230 (261)
93 4ga2_A E3 SUMO-protein ligase 98.9 3.8E-09 1.3E-13 91.9 7.3 115 437-554 31-149 (150)
94 3rjv_A Putative SEL1 repeat pr 98.9 3.4E-07 1.1E-11 84.8 21.0 174 352-570 4-199 (212)
95 2yhc_A BAMD, UPF0169 lipoprote 98.8 4E-07 1.4E-11 85.2 21.7 204 335-571 5-216 (225)
96 2pzi_A Probable serine/threoni 98.8 1.7E-08 5.9E-13 111.3 13.8 171 345-554 402-583 (681)
97 3gyz_A Chaperone protein IPGC; 98.8 1.5E-08 5E-13 87.8 10.4 102 468-569 30-134 (151)
98 3mv2_B Coatomer subunit epsilo 98.8 7.3E-07 2.5E-11 85.6 22.3 185 322-541 85-289 (310)
99 3qky_A Outer membrane assembly 98.8 9.1E-08 3.1E-12 92.0 16.2 171 368-569 14-225 (261)
100 3urz_A Uncharacterized protein 98.8 1.7E-07 5.7E-12 86.6 16.3 160 339-538 9-190 (208)
101 3qou_A Protein YBBN; thioredox 98.8 1.6E-07 5.6E-12 91.5 16.4 162 368-566 116-282 (287)
102 2ifu_A Gamma-SNAP; membrane fu 98.8 5.8E-07 2E-11 88.6 20.6 119 439-560 118-253 (307)
103 2uy1_A Cleavage stimulation fa 98.7 5.4E-06 1.9E-10 87.1 28.4 200 353-567 198-412 (493)
104 4gco_A Protein STI-1; structur 98.7 6.3E-08 2.1E-12 81.1 10.9 99 469-567 8-109 (126)
105 4gco_A Protein STI-1; structur 98.7 9.3E-08 3.2E-12 80.1 11.4 113 433-548 8-124 (126)
106 3qou_A Protein YBBN; thioredox 98.7 7.2E-08 2.5E-12 94.1 12.2 134 434-570 114-250 (287)
107 3urz_A Uncharacterized protein 98.7 3.9E-07 1.3E-11 84.1 16.6 158 208-370 10-191 (208)
108 2vsy_A XCC0866; transferase, g 98.7 2E-07 7E-12 100.8 16.7 156 383-543 3-166 (568)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3E-07 1E-11 85.1 15.2 127 438-569 7-151 (213)
110 2fo7_A Synthetic consensus TPR 98.7 4.1E-07 1.4E-11 76.7 14.8 93 204-298 3-95 (136)
111 2uy1_A Cleavage stimulation fa 98.7 6.3E-06 2.1E-10 86.6 26.8 353 152-533 6-412 (493)
112 2pzi_A Probable serine/threoni 98.7 2.9E-07 9.8E-12 101.5 17.3 164 182-348 402-582 (681)
113 2r5s_A Uncharacterized protein 98.7 1.7E-07 5.8E-12 83.9 12.8 129 436-567 39-172 (176)
114 3rjv_A Putative SEL1 repeat pr 98.7 1.2E-06 4.2E-11 80.9 19.0 158 238-401 19-200 (212)
115 2vgx_A Chaperone SYCD; alterna 98.7 5.2E-08 1.8E-12 84.3 8.8 102 468-569 15-119 (148)
116 2r5s_A Uncharacterized protein 98.6 8.2E-07 2.8E-11 79.4 16.2 155 142-297 8-169 (176)
117 2ifu_A Gamma-SNAP; membrane fu 98.6 5.7E-07 1.9E-11 88.7 15.2 125 247-396 46-182 (307)
118 2vsy_A XCC0866; transferase, g 98.6 5.4E-07 1.8E-11 97.5 15.7 146 316-499 2-154 (568)
119 1a17_A Serine/threonine protei 98.6 5.8E-07 2E-11 79.2 13.2 128 437-567 13-145 (166)
120 2lni_A Stress-induced-phosphop 98.6 6E-07 2.1E-11 75.6 12.2 116 436-554 15-133 (133)
121 2vyi_A SGTA protein; chaperone 98.6 7E-07 2.4E-11 74.8 12.4 119 436-556 11-131 (131)
122 3dra_A Protein farnesyltransfe 98.6 2.5E-05 8.4E-10 75.8 24.6 162 348-547 124-301 (306)
123 1na0_A Designed protein CTPR3; 98.5 9.6E-07 3.3E-11 73.2 12.7 115 437-553 9-125 (125)
124 3dra_A Protein farnesyltransfe 98.5 2.1E-05 7E-10 76.4 23.1 212 349-567 48-286 (306)
125 2e2e_A Formate-dependent nitri 98.5 2.2E-07 7.5E-12 83.2 8.6 122 447-570 20-146 (177)
126 2xcb_A PCRH, regulatory protei 98.5 6.3E-07 2.2E-11 76.8 11.1 102 468-569 12-116 (142)
127 1p5q_A FKBP52, FK506-binding p 98.5 5.3E-07 1.8E-11 90.1 12.1 129 436-567 146-293 (336)
128 2yhc_A BAMD, UPF0169 lipoprote 98.5 4.1E-07 1.4E-11 85.2 10.2 134 436-569 3-177 (225)
129 2kck_A TPR repeat; tetratricop 98.5 7.7E-07 2.6E-11 72.2 10.7 99 472-570 5-108 (112)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.5 3.6E-06 1.2E-10 77.7 16.6 125 143-267 9-151 (213)
131 3u3w_A Transcriptional activat 98.5 1.6E-05 5.4E-10 77.7 20.8 198 136-362 42-265 (293)
132 3gyz_A Chaperone protein IPGC; 98.4 4.9E-07 1.7E-11 78.0 8.5 100 437-539 36-138 (151)
133 3upv_A Heat shock protein STI1 98.4 1.1E-06 3.9E-11 73.4 10.6 96 473-568 4-101 (126)
134 3u3w_A Transcriptional activat 98.4 2.3E-05 7.8E-10 76.5 21.4 128 440-567 118-265 (293)
135 2c2l_A CHIP, carboxy terminus 98.4 5.2E-07 1.8E-11 87.6 9.4 194 334-568 4-199 (281)
136 3gw4_A Uncharacterized protein 98.4 3.3E-06 1.1E-10 77.2 14.4 156 183-362 4-175 (203)
137 1hxi_A PEX5, peroxisome target 98.4 8.4E-07 2.9E-11 73.5 9.1 94 475-568 19-114 (121)
138 2qfc_A PLCR protein; TPR, HTH, 98.4 1E-05 3.6E-10 79.0 17.6 127 441-567 119-265 (293)
139 4f3v_A ESX-1 secretion system 98.4 1.7E-05 5.9E-10 75.1 18.0 129 439-570 104-239 (282)
140 3sz7_A HSC70 cochaperone (SGT) 98.4 1.9E-06 6.6E-11 75.8 10.8 98 472-569 10-109 (164)
141 3q49_B STIP1 homology and U bo 98.4 3.2E-06 1.1E-10 71.6 11.7 98 472-569 8-107 (137)
142 4f3v_A ESX-1 secretion system 98.4 2.7E-05 9.2E-10 73.8 18.9 128 274-401 104-240 (282)
143 1elw_A TPR1-domain of HOP; HOP 98.4 5.1E-06 1.7E-10 67.9 12.5 109 437-548 4-115 (118)
144 2dba_A Smooth muscle cell asso 98.3 9.2E-06 3.1E-10 69.7 14.3 112 436-550 27-144 (148)
145 4gcn_A Protein STI-1; structur 98.3 1.5E-06 5.2E-11 72.7 8.8 93 475-567 10-111 (127)
146 1elw_A TPR1-domain of HOP; HOP 98.3 4E-06 1.4E-10 68.5 11.2 98 472-569 3-102 (118)
147 1na0_A Designed protein CTPR3; 98.3 5E-06 1.7E-10 68.8 11.6 97 473-569 9-107 (125)
148 3upv_A Heat shock protein STI1 98.3 3.8E-06 1.3E-10 70.1 10.8 110 437-549 4-122 (126)
149 2lni_A Stress-induced-phosphop 98.3 4.1E-06 1.4E-10 70.4 11.1 98 472-569 15-114 (133)
150 2dba_A Smooth muscle cell asso 98.3 6.2E-06 2.1E-10 70.8 12.4 98 472-569 27-129 (148)
151 2fbn_A 70 kDa peptidylprolyl i 98.3 5.8E-06 2E-10 75.4 12.8 130 438-567 39-185 (198)
152 2vgx_A Chaperone SYCD; alterna 98.3 3.1E-06 1.1E-10 73.0 10.3 103 436-541 20-125 (148)
153 2xcb_A PCRH, regulatory protei 98.3 2.9E-06 9.9E-11 72.6 9.6 105 437-544 18-125 (142)
154 3sz7_A HSC70 cochaperone (SGT) 98.3 5.2E-06 1.8E-10 73.1 11.4 108 436-546 10-120 (164)
155 2qfc_A PLCR protein; TPR, HTH, 98.3 5.2E-05 1.8E-09 73.9 19.5 169 204-396 77-264 (293)
156 2hr2_A Hypothetical protein; a 98.3 2.9E-06 9.8E-11 72.5 8.9 63 506-568 58-131 (159)
157 2vyi_A SGTA protein; chaperone 98.2 8E-06 2.7E-10 68.1 11.1 98 472-569 11-110 (131)
158 3gw4_A Uncharacterized protein 98.2 6.7E-05 2.3E-09 68.3 18.1 156 315-499 4-173 (203)
159 2c2l_A CHIP, carboxy terminus 98.2 5.4E-06 1.9E-10 80.3 10.4 96 202-299 4-99 (281)
160 2e2e_A Formate-dependent nitri 98.2 1.1E-05 3.6E-10 72.0 11.6 103 436-541 43-151 (177)
161 1a17_A Serine/threonine protei 98.2 2.8E-05 9.6E-10 68.1 14.2 94 203-298 14-107 (166)
162 4gcn_A Protein STI-1; structur 98.2 5.3E-06 1.8E-10 69.3 8.6 97 438-537 9-115 (127)
163 3q49_B STIP1 homology and U bo 98.2 8.6E-06 2.9E-10 68.9 10.1 100 435-537 7-109 (137)
164 2xev_A YBGF; tetratricopeptide 98.2 5.5E-06 1.9E-10 69.3 8.4 90 479-568 8-105 (129)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.6E-05 5.5E-10 82.9 13.6 132 437-568 268-415 (457)
166 3q7a_A Farnesyltransferase alp 98.1 0.00057 2E-08 67.0 23.4 122 421-546 186-344 (349)
167 1hxi_A PEX5, peroxisome target 98.1 6.7E-06 2.3E-10 68.0 8.3 97 440-539 20-119 (121)
168 1wao_1 Serine/threonine protei 98.1 6E-06 2.1E-10 86.6 9.6 118 443-563 12-134 (477)
169 3rkv_A Putative peptidylprolyl 98.1 8.8E-06 3E-10 71.4 8.9 64 505-568 63-126 (162)
170 1ihg_A Cyclophilin 40; ppiase 98.1 1.5E-05 5.3E-10 80.3 11.3 123 438-560 224-362 (370)
171 1elr_A TPR2A-domain of HOP; HO 98.1 1.3E-05 4.5E-10 66.8 9.0 92 476-567 7-107 (131)
172 3k9i_A BH0479 protein; putativ 98.1 2.8E-06 9.7E-11 69.8 4.7 83 486-568 3-90 (117)
173 2xev_A YBGF; tetratricopeptide 98.1 3E-05 1E-09 64.6 11.2 105 441-548 6-119 (129)
174 2if4_A ATFKBP42; FKBP-like, al 98.1 6.5E-06 2.2E-10 82.1 8.2 126 438-566 180-326 (338)
175 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4.3E-10 67.0 8.6 112 437-551 4-124 (131)
176 2kck_A TPR repeat; tetratricop 98.1 1.9E-05 6.4E-10 63.8 9.4 102 436-539 5-111 (112)
177 3ro3_A PINS homolog, G-protein 98.0 1.3E-05 4.3E-10 69.8 8.8 131 438-568 10-158 (164)
178 1p5q_A FKBP52, FK506-binding p 98.0 6.5E-06 2.2E-10 82.1 7.7 116 451-569 127-260 (336)
179 3q7a_A Farnesyltransferase alp 98.0 0.00035 1.2E-08 68.5 19.5 216 345-567 65-330 (349)
180 3dss_A Geranylgeranyl transfer 98.0 0.0011 3.7E-08 64.7 22.7 177 386-567 91-303 (331)
181 2hr2_A Hypothetical protein; a 98.0 8.3E-06 2.9E-10 69.6 6.8 105 438-545 12-142 (159)
182 3rkv_A Putative peptidylprolyl 98.0 1.1E-05 3.8E-10 70.7 7.8 114 437-550 11-143 (162)
183 2fbn_A 70 kDa peptidylprolyl i 98.0 1.3E-05 4.4E-10 73.0 8.1 93 204-298 40-148 (198)
184 3k9i_A BH0479 protein; putativ 98.0 1.1E-05 3.8E-10 66.2 6.5 93 449-542 2-98 (117)
185 4b4t_Q 26S proteasome regulato 97.9 0.00034 1.2E-08 72.4 19.0 197 342-567 12-244 (434)
186 3dss_A Geranylgeranyl transfer 97.9 0.00062 2.1E-08 66.4 18.9 205 320-549 91-319 (331)
187 1dce_A Protein (RAB geranylger 97.9 0.0007 2.4E-08 72.2 21.1 134 420-557 91-244 (567)
188 3n71_A Histone lysine methyltr 97.9 3.1E-05 1.1E-09 80.6 10.1 129 446-574 318-470 (490)
189 2l6j_A TPR repeat-containing p 97.9 4.2E-05 1.4E-09 61.7 8.0 92 472-563 3-102 (111)
190 4b4t_Q 26S proteasome regulato 97.8 0.0054 1.9E-07 63.1 25.8 164 210-397 12-203 (434)
191 3ma5_A Tetratricopeptide repea 97.8 8.6E-05 2.9E-09 58.7 8.5 65 504-568 6-70 (100)
192 2if4_A ATFKBP42; FKBP-like, al 97.8 3.3E-05 1.1E-09 77.0 7.2 95 473-567 179-292 (338)
193 3ro3_A PINS homolog, G-protein 97.8 0.00025 8.4E-09 61.4 12.2 94 203-296 10-113 (164)
194 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 3.4E-05 1.2E-09 80.5 7.5 116 451-569 248-381 (457)
195 1zu2_A Mitochondrial import re 97.8 1.9E-05 6.5E-10 67.2 4.3 49 521-569 62-121 (158)
196 2kat_A Uncharacterized protein 97.7 7.6E-05 2.6E-09 60.8 7.7 78 491-568 3-82 (115)
197 1na3_A Designed protein CTPR2; 97.7 0.00014 4.7E-09 56.0 8.9 81 473-553 9-91 (91)
198 3bee_A Putative YFRE protein; 97.7 0.0002 6.9E-09 55.4 8.8 70 502-571 3-75 (93)
199 1ihg_A Cyclophilin 40; ppiase 97.7 0.00012 4.1E-09 73.8 9.5 96 474-569 224-337 (370)
200 1klx_A Cysteine rich protein B 97.6 0.00057 2E-08 57.7 11.1 112 451-570 9-128 (138)
201 1wao_1 Serine/threonine protei 97.6 7.2E-05 2.5E-09 78.4 6.6 92 478-569 11-104 (477)
202 1zu2_A Mitochondrial import re 97.6 5.8E-05 2E-09 64.2 4.6 110 449-568 14-147 (158)
203 1dce_A Protein (RAB geranylger 97.5 0.0011 3.8E-08 70.7 15.2 147 420-570 47-223 (567)
204 2l6j_A TPR repeat-containing p 97.5 0.00026 9E-09 56.8 7.8 67 503-569 2-68 (111)
205 3n71_A Histone lysine methyltr 97.4 0.0013 4.4E-08 68.4 12.8 127 212-362 319-463 (490)
206 1na3_A Designed protein CTPR2; 97.3 0.00078 2.7E-08 51.6 8.3 65 505-569 9-73 (91)
207 2kat_A Uncharacterized protein 97.3 0.001 3.6E-08 53.8 8.7 80 455-537 3-85 (115)
208 3lvg_A Clathrin heavy chain 1; 97.2 0.00025 8.6E-09 70.5 4.5 238 72-325 54-326 (624)
209 2kc7_A BFR218_protein; tetratr 97.2 0.00052 1.8E-08 53.8 5.5 63 480-542 7-72 (99)
210 3qww_A SET and MYND domain-con 97.1 0.0006 2.1E-08 69.7 6.8 62 506-567 341-410 (433)
211 2kc7_A BFR218_protein; tetratr 97.0 0.0017 5.9E-08 50.7 7.1 59 511-569 6-65 (99)
212 3qwp_A SET and MYND domain-con 96.9 0.0027 9.3E-08 64.9 10.0 85 483-567 297-399 (429)
213 3qww_A SET and MYND domain-con 96.9 0.0051 1.7E-07 62.8 11.7 94 449-542 310-424 (433)
214 3ma5_A Tetratricopeptide repea 96.9 0.0018 6E-08 50.9 6.3 65 472-536 6-72 (100)
215 1klx_A Cysteine rich protein B 96.9 0.015 5.2E-07 48.7 12.6 111 216-364 9-127 (138)
216 3ly7_A Transcriptional activat 96.8 0.0075 2.6E-07 59.0 11.0 67 502-569 274-340 (372)
217 3ly7_A Transcriptional activat 96.8 0.025 8.7E-07 55.3 14.5 75 470-545 274-349 (372)
218 3qwp_A SET and MYND domain-con 96.8 0.012 4.2E-07 60.1 13.0 100 444-543 294-414 (429)
219 3lvg_A Clathrin heavy chain 1; 96.7 0.0013 4.6E-08 65.5 5.0 207 3-223 81-325 (624)
220 3mkq_A Coatomer beta'-subunit; 96.2 0.21 7.2E-06 56.0 20.4 144 144-330 633-776 (814)
221 2v5f_A Prolyl 4-hydroxylase su 96.1 0.034 1.2E-06 43.7 9.4 74 473-546 5-87 (104)
222 3u64_A Protein TP_0956; tetrat 96.1 0.018 6.1E-07 53.9 8.5 88 489-576 179-277 (301)
223 1wy6_A Hypothetical protein ST 95.9 0.53 1.8E-05 38.0 15.3 84 486-571 74-157 (172)
224 3bee_A Putative YFRE protein; 95.8 0.051 1.8E-06 41.6 8.9 67 471-537 4-75 (93)
225 1pc2_A Mitochondria fission pr 95.8 0.046 1.6E-06 45.9 9.0 87 453-541 14-107 (152)
226 1pc2_A Mitochondria fission pr 95.5 0.029 9.8E-07 47.1 6.8 67 502-568 29-100 (152)
227 3mkq_A Coatomer beta'-subunit; 95.4 0.25 8.4E-06 55.4 16.2 95 152-262 611-706 (814)
228 4ady_A RPN2, 26S proteasome re 95.2 4.9 0.00017 44.6 28.2 412 5-430 194-657 (963)
229 4h7y_A Dual specificity protei 95.1 0.06 2E-06 44.4 7.1 99 472-570 12-125 (161)
230 3mkq_B Coatomer subunit alpha; 95.1 0.96 3.3E-05 38.9 15.0 99 181-296 15-113 (177)
231 1qsa_A Protein (soluble lytic 94.8 2.9 9.9E-05 44.5 21.2 307 212-533 16-347 (618)
232 2v5f_A Prolyl 4-hydroxylase su 94.6 0.13 4.6E-06 40.2 7.9 65 504-568 4-75 (104)
233 3mkq_B Coatomer subunit alpha; 93.7 1.4 5E-05 37.8 13.0 99 282-393 15-113 (177)
234 1nzn_A CGI-135 protein, fissio 93.6 0.67 2.3E-05 37.3 10.1 89 453-543 17-112 (126)
235 4gns_B Protein CSD3, chitin bi 93.1 0.25 8.5E-06 53.6 9.1 54 512-565 344-397 (754)
236 1wy6_A Hypothetical protein ST 93.1 1.3 4.4E-05 35.8 10.6 136 119-269 21-157 (172)
237 3u64_A Protein TP_0956; tetrat 92.6 0.21 7.2E-06 46.8 6.6 105 453-566 179-296 (301)
238 2wpv_A GET4, UPF0363 protein Y 92.4 7.9 0.00027 36.9 20.4 80 302-396 133-215 (312)
239 4gns_B Protein CSD3, chitin bi 92.1 0.91 3.1E-05 49.2 11.7 54 444-500 344-398 (754)
240 1nzn_A CGI-135 protein, fissio 90.9 0.41 1.4E-05 38.5 5.7 80 489-568 17-103 (126)
241 3lpz_A GET4 (YOR164C homolog); 90.6 12 0.00043 35.8 20.8 65 175-250 39-107 (336)
242 2wpv_A GET4, UPF0363 protein Y 90.5 12 0.00042 35.6 19.4 166 174-361 36-215 (312)
243 3lpz_A GET4 (YOR164C homolog); 89.9 14 0.00049 35.4 22.4 177 179-396 20-214 (336)
244 2p58_C Putative type III secre 89.3 4.4 0.00015 30.5 9.4 79 277-372 28-106 (116)
245 2uwj_G Type III export protein 89.1 4.1 0.00014 30.7 9.2 79 277-372 27-105 (115)
246 1y8m_A FIS1; mitochondria, unk 88.6 4.6 0.00016 33.1 10.2 70 470-539 36-111 (144)
247 4ady_A RPN2, 26S proteasome re 88.0 37 0.0013 37.7 39.6 26 43-68 147-172 (963)
248 3o48_A Mitochondria fission 1 87.2 2 6.9E-05 34.7 7.2 70 471-540 38-113 (134)
249 4h7y_A Dual specificity protei 85.4 15 0.0005 30.5 12.1 32 332-363 11-48 (161)
250 4b4t_P 26S proteasome regulato 85.4 20 0.00069 36.3 15.6 92 442-533 142-246 (445)
251 2ff4_A Probable regulatory pro 85.2 2.1 7.2E-05 42.8 8.1 61 507-567 173-233 (388)
252 3o48_A Mitochondria fission 1 85.1 6 0.00021 31.9 8.9 65 503-567 38-106 (134)
253 3ffl_A Anaphase-promoting comp 84.4 6.1 0.00021 33.4 9.1 59 441-499 24-89 (167)
254 3ltm_A Alpha-REP4; protein eng 84.0 22 0.00075 31.4 19.9 25 63-87 24-48 (211)
255 1y8m_A FIS1; mitochondria, unk 83.8 17 0.00057 29.8 11.4 67 502-568 36-106 (144)
256 4fhn_B Nucleoporin NUP120; pro 83.2 11 0.00039 43.6 14.2 160 177-352 818-989 (1139)
257 1v54_E Cytochrome C oxidase po 83.2 6.2 0.00021 29.9 7.6 60 420-481 28-87 (109)
258 1qsa_A Protein (soluble lytic 81.3 59 0.002 34.4 33.0 135 420-567 270-409 (618)
259 3ffl_A Anaphase-promoting comp 81.3 14 0.0005 31.1 10.2 21 278-298 128-148 (167)
260 4fhn_B Nucleoporin NUP120; pro 78.8 75 0.0026 36.8 19.0 53 277-330 817-869 (1139)
261 3ltm_A Alpha-REP4; protein eng 78.5 34 0.0012 30.0 19.3 29 332-361 155-183 (211)
262 3ltj_A Alpharep-4; protein eng 77.4 36 0.0012 29.6 18.2 108 138-249 88-195 (201)
263 1zbp_A Hypothetical protein VP 77.0 4.1 0.00014 37.5 6.0 59 482-540 6-66 (273)
264 2ff4_A Probable regulatory pro 75.2 17 0.00056 36.2 10.7 70 205-275 174-248 (388)
265 1v54_E Cytochrome C oxidase po 74.4 26 0.0009 26.6 9.0 63 349-412 25-87 (109)
266 2y69_E Cytochrome C oxidase su 73.5 15 0.00053 29.5 7.6 60 420-481 71-130 (152)
267 1zbp_A Hypothetical protein VP 73.4 35 0.0012 31.4 11.2 50 448-499 8-57 (273)
268 2uwj_G Type III export protein 73.3 27 0.00093 26.3 9.4 61 179-242 47-107 (115)
269 2p58_C Putative type III secre 72.5 29 0.00098 26.3 10.7 59 180-241 49-107 (116)
270 2y69_E Cytochrome C oxidase su 66.8 20 0.00067 28.9 6.9 59 220-279 71-129 (152)
271 2qx5_A Nucleoporin NIC96; mRNA 66.6 58 0.002 34.7 12.8 41 174-214 155-198 (661)
272 3eiq_C Programmed cell death p 64.7 1.1E+02 0.0036 29.8 13.5 75 204-279 219-295 (358)
273 3ltj_A Alpharep-4; protein eng 64.1 71 0.0024 27.6 20.5 142 138-287 26-167 (201)
274 3txn_A 26S proteasome regulato 62.2 1.2E+02 0.0043 29.8 23.5 156 142-297 21-206 (394)
275 1oyz_A Hypothetical protein YI 57.2 1.2E+02 0.004 27.9 22.9 81 270-350 140-222 (280)
276 3e3v_A Regulatory protein RECX 55.4 70 0.0024 27.3 9.3 115 387-503 51-167 (177)
277 3esl_A Checkpoint serine/threo 53.9 1E+02 0.0035 26.9 9.8 60 508-568 83-144 (202)
278 2zu6_B Programmed cell death p 53.8 84 0.0029 29.7 10.3 28 44-71 6-33 (307)
279 1wdy_A 2-5A-dependent ribonucl 53.8 86 0.0029 28.6 10.8 19 48-66 9-27 (285)
280 4b4t_R RPN7, 26S proteasome re 51.6 36 0.0012 34.2 7.9 58 476-533 134-196 (429)
281 4b4t_R RPN7, 26S proteasome re 50.5 1.6E+02 0.0054 29.5 12.5 32 535-568 343-374 (429)
282 3kea_A K1L; tropism, ANK repea 49.8 72 0.0024 29.7 9.4 19 48-66 35-53 (285)
283 3esl_A Checkpoint serine/threo 49.4 93 0.0032 27.2 8.9 51 219-269 96-147 (202)
284 3bqo_A Telomeric repeat-bindin 48.3 1.4E+02 0.0046 25.9 9.7 73 489-561 94-173 (211)
285 2nsz_A Programmed cell death p 46.8 94 0.0032 24.8 8.2 73 44-116 10-87 (129)
286 1oyz_A Hypothetical protein YI 42.8 2E+02 0.0068 26.3 23.8 133 220-362 128-262 (280)
287 4b4t_S RPN3, 26S proteasome re 42.3 1.2E+02 0.0039 31.2 9.7 63 505-569 231-300 (523)
288 3bu8_A Telomeric repeat-bindin 42.1 1.8E+02 0.0061 25.6 12.3 18 482-499 123-140 (235)
289 1wdy_A 2-5A-dependent ribonucl 41.6 1.6E+02 0.0053 26.8 10.5 115 77-199 7-130 (285)
290 4a1g_A Mitotic checkpoint seri 40.8 1.5E+02 0.005 24.6 8.4 52 220-271 83-135 (152)
291 2d2s_A Exocyst complex compone 38.5 92 0.0031 28.1 7.6 87 208-297 24-116 (235)
292 4a1g_A Mitotic checkpoint seri 38.0 38 0.0013 28.1 4.5 75 36-114 64-143 (152)
293 1ug3_A EIF4GI, eukaryotic prot 37.2 2.5E+02 0.0084 26.9 11.1 72 44-115 14-89 (339)
294 4gq2_M Nucleoporin NUP120; bet 37.1 2.6E+02 0.009 31.4 12.8 51 443-499 816-866 (950)
295 4b4t_P 26S proteasome regulato 35.7 3.5E+02 0.012 27.1 25.9 95 204-298 139-244 (445)
296 4gq2_M Nucleoporin NUP120; bet 35.1 2.6E+02 0.0089 31.4 12.3 127 177-317 816-950 (950)
297 2ion_A PDCD4, programmed cell 34.5 2E+02 0.0067 23.8 9.5 23 308-330 14-36 (152)
298 2ion_A PDCD4, programmed cell 33.9 1E+02 0.0035 25.5 6.7 25 76-100 13-37 (152)
299 1n11_A Ankyrin; clathrin, BAND 32.3 2.4E+02 0.0083 27.8 10.8 142 48-198 18-170 (437)
300 2d2s_A Exocyst complex compone 32.1 2.1E+02 0.0072 25.7 8.9 81 78-163 24-114 (235)
301 2qx5_A Nucleoporin NIC96; mRNA 31.9 4.9E+02 0.017 27.6 19.9 42 74-116 155-199 (661)
302 3hra_A Ankyrin repeat family p 31.8 1.5E+02 0.0052 25.1 8.1 17 181-197 113-129 (201)
303 3txn_A 26S proteasome regulato 30.7 3.9E+02 0.013 26.2 26.1 90 470-569 253-344 (394)
304 1ya0_A SMG-7 transcript varian 27.8 1.4E+02 0.0048 30.5 7.8 74 477-550 156-231 (497)
305 3ygs_P Procaspase 9; apoptosis 27.7 82 0.0028 23.7 4.6 34 318-351 52-85 (97)
306 3bqo_A Telomeric repeat-bindin 27.7 3E+02 0.01 23.8 12.3 92 106-197 26-143 (211)
307 2fe3_A Peroxide operon regulat 27.2 2.1E+02 0.0073 23.2 7.6 49 335-383 22-70 (145)
308 3d5l_A Regulatory protein RECX 27.0 3.3E+02 0.011 24.1 10.3 110 388-499 95-206 (221)
309 2nsz_A Programmed cell death p 26.7 2.4E+02 0.0082 22.4 10.7 23 308-330 12-34 (129)
310 3eiq_C Programmed cell death p 26.3 4.5E+02 0.015 25.4 15.7 75 337-412 220-296 (358)
311 4b4t_S RPN3, 26S proteasome re 25.0 2E+02 0.0068 29.5 8.1 61 438-499 232-296 (523)
312 2zu6_B Programmed cell death p 24.7 4.4E+02 0.015 24.7 12.9 74 337-411 169-244 (307)
313 2fe3_A Peroxide operon regulat 24.6 1.9E+02 0.0066 23.5 6.8 63 226-289 11-73 (145)
314 4aez_C MAD3, mitotic spindle c 24.5 73 0.0025 28.3 4.3 87 25-115 97-193 (223)
315 3ygs_P Procaspase 9; apoptosis 24.5 97 0.0033 23.2 4.5 34 186-219 52-85 (97)
316 1mzb_A Ferric uptake regulatio 23.7 2.8E+02 0.0095 22.1 7.5 62 227-289 8-70 (136)
317 4gq4_A Menin; tumor suppressor 23.3 2.9E+02 0.0098 27.2 8.2 28 71-98 302-329 (489)
318 3l6a_A Eukaryotic translation 22.9 1.4E+02 0.0049 28.9 6.5 28 306-333 15-42 (364)
319 2w57_A Ferric uptake regulatio 22.6 2.9E+02 0.0099 22.5 7.5 63 226-289 6-69 (150)
320 3kea_A K1L; tropism, ANK repea 21.8 1.5E+02 0.0051 27.4 6.4 15 356-370 210-224 (285)
321 2xig_A Ferric uptake regulatio 21.3 2.7E+02 0.0093 22.7 7.1 63 226-289 16-78 (150)
322 2fu4_A Ferric uptake regulatio 20.7 2.3E+02 0.0078 20.0 7.3 62 226-288 6-68 (83)
323 3bu8_A Telomeric repeat-bindin 20.6 1.8E+02 0.0062 25.5 5.7 50 511-560 120-169 (235)
324 2r9g_A AAA ATPase, central reg 20.6 4.2E+02 0.014 23.0 10.4 17 348-364 28-44 (204)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-40 Score=359.62 Aligned_cols=477 Identities=8% Similarity=-0.045 Sum_probs=363.6
Q ss_pred HHHhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcChhhHHHHHHH
Q 005642 50 MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKADLAALEYGKQI 127 (686)
Q Consensus 50 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~~~a~~i 127 (686)
.+.+.|.+..+...|+.++.+++..|+.++..+.+.|++++|+.+|++|.. |+..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-------------------- 121 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-------------------- 121 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHH--------------------
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHH--------------------
Confidence 345667777788888888878888888888888888888888888888743 4444444
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccC--CCChhhHHHHHHHHHccCCHHHHHHHHhhcCC------
Q 005642 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK--EPDDFCLSALISGYANCGKMNDARRVFDRTTD------ 199 (686)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 199 (686)
.++.+|.+.|++++|..+|+++. .++..+++.++.+|.+.|++++|.++|+++..
T Consensus 122 -----------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 184 (597)
T 2xpi_A 122 -----------------WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEK 184 (597)
T ss_dssp -----------------HHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----
T ss_pred -----------------HHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccc
Confidence 44444555555555555555442 24444455555555555555555555543222
Q ss_pred -------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhH--HHH-HHHH
Q 005642 200 -------------TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG--KQV-HGHA 263 (686)
Q Consensus 200 -------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a--~~~-~~~~ 263 (686)
.+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+...+...+..+.+ ..+ +..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 263 (597)
T 2xpi_A 185 NANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263 (597)
T ss_dssp ------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHH
T ss_pred ccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCccc
Confidence 247899999999999999999999999998853 22444555555444333222211 111 4444
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhccc--CCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHH
Q 005642 264 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWN 338 (686)
Q Consensus 264 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 338 (686)
...+..+...+|+.++..|.+.|++++|.++|+++.. ++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 343 (597)
T 2xpi_A 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343 (597)
T ss_dssp HGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred ccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHH
Confidence 5555555666778888999999999999999999885 7889999999999999999999999998863 4678999
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhch
Q 005642 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 418 (686)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 418 (686)
.++.++.+.|++++|..+|+++.+. .+.+..++..++..+.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999865 35578889999999999999999999999998864 456789999999999999
Q ss_pred h--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005642 419 Y--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLI 496 (686)
Q Consensus 419 ~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (686)
+ +|+++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|
T Consensus 422 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp CHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8 99999999987653 47789999999999999999999999999842 2337899999999999999999999999
Q ss_pred HhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 497 EQM-------PFEAD--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 497 ~~~-------~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+++ +..|+ ..+|..++.+|.+.|++++|+..++++++..|+++.+|..++.+|...|++++|.++++++.+
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 988 34677 789999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 005642 568 KH 569 (686)
Q Consensus 568 ~~ 569 (686)
..
T Consensus 579 ~~ 580 (597)
T 2xpi_A 579 IS 580 (597)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-38 Score=343.98 Aligned_cols=473 Identities=9% Similarity=0.005 Sum_probs=374.4
Q ss_pred CCchhhHHHHHHHHHhcCCcHHHHHHhccCC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 005642 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK 115 (686)
Q Consensus 38 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~ 115 (686)
++.. .++.++..|.+.|++++|..+|+++. .|+..+|..++.+|.+.|++++|+.+|+++..
T Consensus 82 ~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------- 145 (597)
T 2xpi_A 82 SRED-YLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--------------- 145 (597)
T ss_dssp CHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---------------
T ss_pred HHHH-HHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---------------
Confidence 4555 89999999999999999999999996 47888999999999999999999999998853
Q ss_pred cChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCC-------------------ChhhHHH
Q 005642 116 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP-------------------DDFCLSA 176 (686)
Q Consensus 116 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~ 176 (686)
.+++..+++.++.+|.+.|++++|+++|+++... +..+|+.
T Consensus 146 --------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (597)
T 2xpi_A 146 --------------------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYL 205 (597)
T ss_dssp --------------------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHH
T ss_pred --------------------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHH
Confidence 1345667777788888888888888888754432 3677888
Q ss_pred HHHHHHccCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChhHHHH--H-HHHHHHCCCCcCHHHHHHHHHHHHcc
Q 005642 177 LISGYANCGKMNDARRVFDRTTDT---SSVMWNSMISGYISNNEDTEALL--L-FHKMRRNGVLEDASTLASVLSACSSL 250 (686)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~~~~~ll~~~~~~ 250 (686)
++.+|.+.|++++|.+.|+++.+. +...|..+...+...+..+.+.. + +..+...+..+...+|..++..|.+.
T Consensus 206 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 888888888888888888877642 34455555554443332222211 1 44555444445555666667777788
Q ss_pred CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHh
Q 005642 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFR 327 (686)
Q Consensus 251 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 327 (686)
|++++|.++++++.+. +++..+++.++.+|.+.|++++|..+|+++. +.+..+++.++.++.+.|++++|..+++
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888887765 4678888888888888888888888888776 3466778888888888888888888888
Q ss_pred hCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcch
Q 005642 328 TMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404 (686)
Q Consensus 328 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 404 (686)
++.+ .+..+|+.++..|.+.|++++|.++|+++.+. .+.+..++..++.++.+.|++++|.++|+++.+.+ +.+.
T Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 441 (597)
T 2xpi_A 364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTH 441 (597)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCS
T ss_pred HHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 7753 35677888888888888888888888888764 23356788888888888888888888888887764 4567
Q ss_pred hHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCC--hhHHH
Q 005642 405 IISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY---HIDPE--IEHYS 477 (686)
Q Consensus 405 ~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~ 477 (686)
.++..++.+|.+.|+ +|.++|+++.+... .+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 788888888888887 88888888877543 378899999999999999999999999997432 56786 78999
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhh
Q 005642 478 CMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551 (686)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 551 (686)
.++.+|.+.|++++|.+.|+++. ..| +..+|..++.+|...|++++|...++++++++|+++.++..++.+|..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999973 345 789999999999999999999999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.7e-25 Score=230.14 Aligned_cols=370 Identities=15% Similarity=0.105 Sum_probs=240.1
Q ss_pred HHHHHHhcCChHHHHHHHhccCC--CC-hhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChh
Q 005642 146 LVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDT 219 (686)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 219 (686)
+...+.+.|++++|++.++++.+ |+ ...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 34456667777777777776652 43 33444555666677777777777665432 34556777777777777777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777777776631 2234456666777777777777777777776653 2234455666666666777777777766654
Q ss_pred ---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 005642 300 ---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 373 (686)
Q Consensus 300 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 373 (686)
+.+..+|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..... +.+..++.
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 22344555555555556666655555555543 123445555555555555555555555555431 12344455
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005642 374 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLV 453 (686)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 453 (686)
.+..++.+.|++++|...++.+.+. + +.+..++..+...+.+.|++
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~---------------------------------~-p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL---------------------------------Q-PHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---------------------------------C-SSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---------------------------------C-CCCHHHHHHHHHHHHHcCCH
Confidence 5555555555555555555544432 2 12456777888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005642 454 KEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERM 531 (686)
Q Consensus 454 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 531 (686)
++|.+.|+++.+. .+.+..++..++.++.+.|++++|...++++ ...| +...+..+...+.+.|++++|...++++
T Consensus 288 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888742 2346788888888888888888888888887 3444 4677888888888888888888888888
Q ss_pred HccCCCCchhHHHHHHHHhhcCC
Q 005642 532 IELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 532 ~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
++..|+++.+|..++.++...|+
T Consensus 366 ~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhhCCCCHHHHHhHHHHHHHccC
Confidence 88888888888888888776653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=7.1e-25 Score=227.00 Aligned_cols=350 Identities=12% Similarity=0.068 Sum_probs=234.0
Q ss_pred HHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhh
Q 005642 179 SGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 255 (686)
..+.+.|++++|.+.++++.+ .+...+..+...+.+.|++++|...++...+. .+.+..++..+..++.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHH
Confidence 345556666666666655432 23445555556666666666666666665553 23455566666666666666666
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc--cC-CchhHHHHHHHHHhCCCHHHHHHHHhhCCC-
Q 005642 256 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPN- 331 (686)
Q Consensus 256 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 331 (686)
|...++++.+.. +.+...+..++.++.+.|++++|...|+++. .| +...+..+...+...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 666666666543 2244455666666666666666666666554 12 233444445555555555555555554432
Q ss_pred -C-CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 005642 332 -K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409 (686)
Q Consensus 332 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 409 (686)
| +..+|..+...+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A--------------------- 222 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA--------------------- 222 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH---------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH---------------------
Confidence 1 23445555555555555555555555554431 12233444444444444554444
Q ss_pred HHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 005642 410 LVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC 488 (686)
Q Consensus 410 li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 488 (686)
...+++..... +.+..++..+...+...|++++|.+.|+++.+ ..| +..++..++.++.+.|+
T Consensus 223 ------------~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 223 ------------VAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp ------------HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSC
T ss_pred ------------HHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCC
Confidence 44444444332 22577888999999999999999999999983 345 57899999999999999
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 489 LNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 489 ~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
+++|.+.|+++. .+++..+|..+...+...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.
T Consensus 287 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999983 445788999999999999999999999999999999999999999999999999999999999888
Q ss_pred hc
Q 005642 567 EK 568 (686)
Q Consensus 567 ~~ 568 (686)
+.
T Consensus 367 ~~ 368 (388)
T 1w3b_A 367 RI 368 (388)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.3e-26 Score=240.18 Aligned_cols=213 Identities=14% Similarity=0.142 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHCCCCcCHH-HHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 220 EALLLFHKMRRNGVLEDAS-TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
.+..+.+++.++++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4455666777766655443 57778888888888888888888888888888888888888888776654221
Q ss_pred ccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005642 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 378 (686)
Q Consensus 299 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 378 (686)
.+.+..++|.++|++|...|+.||..||+.+|.+
T Consensus 81 ----------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 81 ----------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp ----------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred ----------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 1223456777788888888888888888888888
Q ss_pred HHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005642 379 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456 (686)
Q Consensus 379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 456 (686)
|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+ +|.++|++|.+.|+.||..||++||.+|++.|+.++|
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 88888888888888888888888888888888888888877 7888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005642 457 QKWFDAMKWQYHIDPEIEHYSCMVDLFARA 486 (686)
Q Consensus 457 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (686)
.+++++|. +.+..|+..||+.++..|.+.
T Consensus 195 ~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 195 YKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 88888888 568888888888888887753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.1e-25 Score=236.97 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=175.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC---------hhhHHHHHHHHHHcCCCchHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF---------LEHGKQVHGHACKVGVIDDVI 273 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 273 (686)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888999999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhH
Q 005642 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 353 (686)
Q Consensus 274 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 353 (686)
+|+.+|.+|++.|++++|.++|++|.. .-..||..+|+.+|.+|++.|++++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~---------------------------~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKA---------------------------FGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------TTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------------cCCCCccceehHHHHHHHHCCCHHHH
Confidence 999999999999999999999997642 22458999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh
Q 005642 354 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY 419 (686)
Q Consensus 354 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 419 (686)
.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|..|+..+|+.++..|+..+.
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999987654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.4e-22 Score=216.24 Aligned_cols=422 Identities=10% Similarity=0.028 Sum_probs=287.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhc
Q 005642 141 VLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISN 215 (686)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 215 (686)
..+......+.+.|++++|+..|+++.+ |+...|..+..++.+.|++++|...|+++.+ .+..+|..+..++.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888873 7777888888888888888888888886543 3566888888888888
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh---cCChhHHH
Q 005642 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK---RGMPSDAC 292 (686)
Q Consensus 216 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~ 292 (686)
|++++|+..|+++.+.+ +++......++..+........+.+.+..+...+..|+......-...... ......+.
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 88888888888888764 333333333333333222222222222111111100100000000000000 00001111
Q ss_pred HHHHhcc---------cC-CchhHHHHHHHHHh---CCCHHHHHHHHhhCCC----------------C-CchhHHHHHH
Q 005642 293 KLFSELK---------VY-DTILLNTMITVYSS---CGRIEDAKHIFRTMPN----------------K-SLISWNSMIV 342 (686)
Q Consensus 293 ~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~ 342 (686)
..+.... .| +...+......+.. .|++++|...|+++.+ + +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1111111 01 12333344444443 6667777766665533 1 2346677777
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--H
Q 005642 343 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--D 420 (686)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~ 420 (686)
.+...|++++|...|+++.+.. |+..++..+..++...|++++|...++.+.+.. +.+...+..+...|...|+ +
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 7888888888888888877753 336677777778888888888888888777654 3455677777778887776 8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005642 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP 500 (686)
Q Consensus 421 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (686)
|...+++..+.... +..++..+...+...|++++|..+++++.+. .+.+...+..++..+.+.|++++|...++++.
T Consensus 323 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888765433 5678888999999999999999999999843 22367889999999999999999999999872
Q ss_pred ----CCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 501 ----FEAD----VGMWSSILRGCVA---HGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 501 ----~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..++ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|...++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 2222 4478889999999 9999999999999999999999999999999999999999999999888754
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=5.1e-21 Score=202.23 Aligned_cols=334 Identities=9% Similarity=0.030 Sum_probs=216.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
..|..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++.+.+.+ +.+..++..++.+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 34444444455555555555555554442 12234444444444555555555555555554443 22344444455555
Q ss_pred HhcCChhHHHHHHHhcccCC---c---hhHHHH------------HHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHH
Q 005642 283 SKRGMPSDACKLFSELKVYD---T---ILLNTM------------ITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMI 341 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~~---~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 341 (686)
.+.|++++|...|+++...+ . ..+..+ ...+...|++++|...|+++.+ .+...+..++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 55555555555555444211 1 222222 3346667777777777766543 3556777788
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHH
Q 005642 342 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA 421 (686)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A 421 (686)
.+|.+.|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+.... +...+..+.
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~---------- 252 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK---------- 252 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH----------
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHH----------
Confidence 8888888888888888887765 2445677778888888888888888888877765321 111111110
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHH
Q 005642 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-----IEHYSCMVDLFARAGCLNEAVNLI 496 (686)
Q Consensus 422 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~ 496 (686)
.+. ....+..+...|.+.|++++|..+|+++.+ ..|+ ...+..++.++.+.|++++|...+
T Consensus 253 -----~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 253 -----QVK------KLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -----HHH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -----HHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 000 112334457889999999999999999984 3454 457899999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH------------HHhhcC-----Ccch
Q 005642 497 EQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS------------IFATSG-----EWEK 557 (686)
Q Consensus 497 ~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~~~~ 557 (686)
+++ ...| +...|..+..+|...|++++|...+++++++.|+++.++..++. .|...| +.++
T Consensus 319 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 997 3445 68889999999999999999999999999999999999999884 455555 4555
Q ss_pred HHHHHHH
Q 005642 558 SSLIRDI 564 (686)
Q Consensus 558 a~~~~~~ 564 (686)
+.+.+++
T Consensus 399 ~~~~y~~ 405 (450)
T 2y4t_A 399 IIKAYRK 405 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666664
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-20 Score=203.11 Aligned_cols=238 Identities=11% Similarity=-0.053 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcc--cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhC
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQN 347 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 347 (686)
.++..+...+...|++++|...|+++. .|+...+..+..++...|++++|...++++.+ .+...|..+...+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 344445555555555555555555443 12233444444455555555555555544433 3556778888888888
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHH
Q 005642 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNE 427 (686)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~ 427 (686)
|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+..
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------------- 368 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---------------------------- 368 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS----------------------------
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----------------------------
Confidence 88888888888887753 3345677777888888888888888888776542
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhCC
Q 005642 428 MRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFAR---AGCLNEAVNLIEQMP 500 (686)
Q Consensus 428 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 500 (686)
+.+..++..+...+...|++++|...++++.+...-.++ ...+..++.++.. .|++++|...++++.
T Consensus 369 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 369 ------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp ------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred ------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 124567777888888999999999999988743222222 3488899999999 999999999998872
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 501 -FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 501 -~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
..| +...+..+...+...|++++|...+++++++.|+++..+..+
T Consensus 443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 443 KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 334 577888999999999999999999999999999887766555
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=4.8e-21 Score=207.41 Aligned_cols=415 Identities=12% Similarity=0.079 Sum_probs=312.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHH
Q 005642 140 SVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYI 213 (686)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 213 (686)
...+..+...+.+.|++++|++.|+++.+ .+...+..+...|.+.|++++|.+.|++..+ .+..+|..+...+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45667788888899999999999988873 4567788888899999999999999987653 45778888999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC------CCchHHHHHHHHHHHHhcCC
Q 005642 214 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG------VIDDVIVASALLDTYSKRGM 287 (686)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~l~~~~~~~g~ 287 (686)
..|++++|+..|+.+ . ..|+... ..+..+...+....+...++.+.... ..|+. ..+..+....+
T Consensus 105 ~~g~~~~A~~~~~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~ 175 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-S--LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFD 175 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHH-h--cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcC
Confidence 999999999999633 3 2333221 12333444455567888888776541 22232 23444556667
Q ss_pred hhHHHHHHHhcccCCch---hHHHHHHHHHh--------CCCHHHHHHHHhhCCCCCc----------hhHHHHHHHHHh
Q 005642 288 PSDACKLFSELKVYDTI---LLNTMITVYSS--------CGRIEDAKHIFRTMPNKSL----------ISWNSMIVGLSQ 346 (686)
Q Consensus 288 ~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~ 346 (686)
.+.+...+......+.. ....+...+.. .|++++|...++++.+.++ .++..+...+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 77766666655544333 33333333322 2478899999888866332 246677788889
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHH
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALAL 424 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~ 424 (686)
.|++++|...|+++.+. .|+..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|+ +|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999885 5667888888889999999999999999998875 4467788888999998887 89999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----
Q 005642 425 FNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP---- 500 (686)
Q Consensus 425 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 500 (686)
|++..+.... +..++..+...+...|++++|.++++++.+. .+.+...+..++..+...|++++|...|+++.
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9998876533 5678889999999999999999999999843 22367899999999999999999999999872
Q ss_pred ----CCCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 501 ----FEADVGMWSSILRGCVAH----------GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 501 ----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
.......+......+... |++++|...++++++..|+++.++..++.+|...|++++|.+.++++.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111233345556777777 999999999999999999999999999999999999999999999988
Q ss_pred hcC
Q 005642 567 EKH 569 (686)
Q Consensus 567 ~~~ 569 (686)
+..
T Consensus 490 ~~~ 492 (537)
T 3fp2_A 490 ILA 492 (537)
T ss_dssp HHC
T ss_pred HhC
Confidence 754
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=4.2e-20 Score=195.21 Aligned_cols=308 Identities=11% Similarity=0.051 Sum_probs=209.8
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc-
Q 005642 221 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK- 299 (686)
Q Consensus 221 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 299 (686)
+...+.+.... -+.+...+..+...+.+.|++++|..+|+.+.+.. +.+...+..++.+|...|++++|...|+++.
T Consensus 11 ~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33344444332 23455667777777777888888888888777763 3466777777778888888888888777665
Q ss_pred --cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc------hhHHHHHH------------HHHhCCChhhHHHHHHH
Q 005642 300 --VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL------ISWNSMIV------------GLSQNGSPIEALDLFCN 359 (686)
Q Consensus 300 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~------------~~~~~g~~~~A~~~~~~ 359 (686)
+.+..++..++.+|.+.|++++|...|+++.+.++ ..+..++. .+...|++++|+..|++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22455666666666666666666666666654222 33333322 24444555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHH
Q 005642 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIIT 439 (686)
Q Consensus 360 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 439 (686)
+.+. .+.+..++..+..++.+.|++++ |...|+++.+.. +.+..+
T Consensus 169 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~---------------------------------A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 169 ILEV-CVWDAELRELRAECFIKEGEPRK---------------------------------AISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCGGG---------------------------------GHHHHHHHHHHH-CSCHHH
T ss_pred HHHh-CCCChHHHHHHHHHHHHCCCHHH---------------------------------HHHHHHHHHHhC-CCCHHH
Confidence 4443 12233444444444444444444 444444444332 236788
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHH------------HHHHHhcCChHHHHHHHHhC-CCCCC-
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCM------------VDLFARAGCLNEAVNLIEQM-PFEAD- 504 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~p~- 504 (686)
+..+...+...|++++|...|+++.+ ..| +...+..+ +..+.+.|++++|...|+++ ...|+
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence 88999999999999999999999883 345 44455444 88999999999999999998 34454
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 505 ----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 505 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
...|..++..+.+.|++++|+..++++++..|+++.+|..++.+|...|++++|...++++.+.
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4478889999999999999999999999999999999999999999999999999999988874
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.7e-19 Score=195.29 Aligned_cols=422 Identities=9% Similarity=-0.013 Sum_probs=223.4
Q ss_pred HHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC---CChhhHHHHHHHH
Q 005642 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGF 82 (686)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 82 (686)
..+...-..+...|++++|...+..+++.... ++. ++..+...|.+.|++++|...|+++.+ .+..+|..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPV-FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 34455556666667777777777777775522 233 677777777777777777777776652 3556677777777
Q ss_pred HhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHH
Q 005642 83 MKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGL--DFDSVLGSSLVNLYGKCGDFNSA 159 (686)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A 159 (686)
...|++++|+..|+.+.. |+.. ...+..+... .....+...++.++...+ .+........+..+....+.+.+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFD--GASIEPMLER--NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-------------CHHHH--HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHHHHhcCCCCC--hHHHHHHHHH--HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 777777777777754322 2211 1111122211 233445555555543210 01111112233334445555555
Q ss_pred HHHHhccCCCChh---hHHHHHHHHHc--------cCCHHHHHHHHhhcCCCC----------hhhHHHHHHHHHhcCCh
Q 005642 160 NQVLNMMKEPDDF---CLSALISGYAN--------CGKMNDARRVFDRTTDTS----------SVMWNSMISGYISNNED 218 (686)
Q Consensus 160 ~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~ 218 (686)
...+....+.+.. ....+...+.. .|++++|..+|+++.+.+ ..+|..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 5555555443322 11122211111 124445555554443311 11233444444445555
Q ss_pred hHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 219 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 219 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
++|+..|+++.+. .|+..++..+...+...|+++.|...++.+.+.. +.+..++..+...|..
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-------------- 322 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI-------------- 322 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh--------------
Confidence 5555555554442 2334444444444445555555555555444432 2233344444444444
Q ss_pred ccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 005642 299 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 375 (686)
Q Consensus 299 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 375 (686)
.|++++|...|+++.+ .+...|..+...+...|++++|...|+++.+. .+.+...+..+
T Consensus 323 -----------------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l 384 (537)
T 3fp2_A 323 -----------------LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFF 384 (537)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHH
T ss_pred -----------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHH
Confidence 4444444444444432 34567778888888888888888888888775 23445677777
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----
Q 005642 376 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC----- 450 (686)
Q Consensus 376 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----- 450 (686)
...+...|++++|...++.+.+...... ........+......+...
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~----------------------------~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQE----------------------------KIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCS----------------------------SCSSTTHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcch----------------------------hhHHHHHHHHHHHHHHHHHhhccc
Confidence 8888888888888888887765431100 0111122233334455555
Q ss_pred -----CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 451 -----GLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 451 -----g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
|++++|...|+++.+. .| +...+..++.+|.+.|++++|.+.|++.
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8888888888887732 33 4566667777777777777777777665
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=7.4e-18 Score=171.75 Aligned_cols=334 Identities=10% Similarity=0.044 Sum_probs=207.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 005642 173 CLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 249 (686)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 249 (686)
.+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 344444555555555555555554332 234455555555555555555555555554431 2234444555555555
Q ss_pred cCChhhHHHHHHHHHHcCCC--chHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHh
Q 005642 250 LGFLEHGKQVHGHACKVGVI--DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 327 (686)
Q Consensus 250 ~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 327 (686)
.|++++|...++.+.+.... .+...+..+...+. + ..+..+...+...|++++|...++
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~------------~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M------------QRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H------------HHHHHHHHHHHHccCHHHHHHHHH
Confidence 55555555555555543210 12222222211100 0 011122456666677777777766
Q ss_pred hCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcch
Q 005642 328 TMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 404 (686)
Q Consensus 328 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 404 (686)
++.+ .++..+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++.+.+..... .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 222 (359)
T 3ieg_A 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-K 222 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-H
T ss_pred HHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-h
Confidence 6543 35567777888888888888888888888765 34456777788888888888888888888777654221 1
Q ss_pred hHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-h----hHHHHH
Q 005642 405 IISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-I----EHYSCM 479 (686)
Q Consensus 405 ~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~----~~~~~l 479 (686)
..+. .+..+. .......+...+.+.|++++|...++++.+. .|+ . ..+..+
T Consensus 223 ~~~~---------------~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 223 RCFA---------------HYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERI 278 (359)
T ss_dssp HHHH---------------HHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHH
T ss_pred HHHH---------------HHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHH
Confidence 1111 111111 1122334466788899999999999998843 243 2 345568
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 480 VDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
..++.+.|++++|...+++.. ..| +...|..+...+...|++++|...++++++..|++..++..+..+....
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 888999999999999998873 344 6788889999999999999999999999999999888888777766543
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=8.2e-16 Score=171.09 Aligned_cols=414 Identities=12% Similarity=0.084 Sum_probs=283.4
Q ss_pred HHHHHHHHhcCCcHHHHHHhccCCC-C-----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCh
Q 005642 45 NRLLQMYMRCGNPTDALLLFDEMPR-R-----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADL 118 (686)
Q Consensus 45 ~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~ 118 (686)
...+..|+..|.+.+|+.+++++.- + +....+.++....+. +..+..+..++...-+ ...+-..+...
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l-- 1062 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN-- 1062 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC--
Confidence 5667777777888888888877752 2 234555566555444 3344444444332211 12222333333
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcC
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 198 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (686)
+.+++|..+++... -.....+.++ -..|++++|.++.++... ..+|..+..++.+.|++++|...|.+.
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 56777777777641 1111122222 266788888888887744 467778888888999999999888764
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHH
Q 005642 199 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 278 (686)
Q Consensus 199 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 278 (686)
.|...|..++..+.+.|++++|+++|...++.. +++...+.+..+|++.++++....+. + .++...+..+
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQV 1201 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHH
Confidence 567788888999999999999999998877653 33333345788888888887544432 2 3455666678
Q ss_pred HHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHH
Q 005642 279 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 358 (686)
Q Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (686)
.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. .++.+|..+..+|...|++..|.....
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88899999999999999864 58888999999999999999999877 456788888888888888888877655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh----HHHHHHHHHHHCCCC
Q 005642 359 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY----DALALFNEMRNTGVK 434 (686)
Q Consensus 359 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~A~~~~~~m~~~~~~ 434 (686)
. +..+...+..++..|.+.|.+++|+.+++..+... +-....|+-|...|++-.. ++++.|..-. +++
T Consensus 1275 ~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~ 1346 (1630)
T 1xi4_A 1275 H-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIP 1346 (1630)
T ss_pred h-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccc
Confidence 3 33455667788888899999999999998777555 5566678788888887765 6666666432 222
Q ss_pred C------CHHHHHHHHHHHhccCCHHHHHHH--------HHHH--HHhcCCCCChhHHHHHHHHHHhcC-----------
Q 005642 435 P------TIITFTAILSACDHCGLVKEGQKW--------FDAM--KWQYHIDPEIEHYSCMVDLFARAG----------- 487 (686)
Q Consensus 435 p------~~~~~~~ll~~~~~~g~~~~A~~~--------~~~~--~~~~~~~p~~~~~~~l~~~~~~~g----------- 487 (686)
| +...|..+...|.+.|+++.|... |+.- ........+++.|.-.+..|....
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l 1426 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVL 1426 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHh
Confidence 2 456788888889999999988732 2111 000112336777777777777666
Q ss_pred ----ChHHHHHHHHhCC
Q 005642 488 ----CLNEAVNLIEQMP 500 (686)
Q Consensus 488 ----~~~~A~~~~~~~~ 500 (686)
+++.+.++|++..
T Consensus 1427 ~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A 1427 SPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred hhcCChHHHHHHHHHcC
Confidence 7888888887653
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=2.2e-17 Score=168.29 Aligned_cols=309 Identities=9% Similarity=0.014 Sum_probs=236.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 005642 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280 (686)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 280 (686)
++..|..+...+...|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3567788888899999999999999998875 24457788888888888899999999998888874 335677888888
Q ss_pred HHHhcCChhHHHHHHHhcccCCc------hhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHH
Q 005642 281 TYSKRGMPSDACKLFSELKVYDT------ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 354 (686)
+|...|++++|...|+++...++ ..+..+...+. ...+..+...+...|++++|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHHH
Confidence 88888888888888887753322 12222221111 112334567788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCC
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVK 434 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~ 434 (686)
..|+++.+. .+.+...+..+...+...|++++|...++.+.+.. +
T Consensus 141 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~ 185 (359)
T 3ieg_A 141 TFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK----------------------------------S 185 (359)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------------------------------S
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------C
Confidence 888888775 24456677778888888888888888877766542 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHH------------HHHHHHHhcCChHHHHHHHHhCC-
Q 005642 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYS------------CMVDLFARAGCLNEAVNLIEQMP- 500 (686)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~- 500 (686)
.+..++..+...+...|++++|.+.+++..+. .| +...+. .++..+.+.|++++|...++++.
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 25677888888889999999999999998842 34 333332 33777999999999999999872
Q ss_pred CCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 501 FEAD-V----GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 501 ~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..|+ . ..+..+...+...|++++|...++++++..|+++.++..++.++...|++++|.+.++++.+.
T Consensus 263 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3343 3 235567888999999999999999999999999999999999999999999999999988864
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=3.1e-16 Score=167.16 Aligned_cols=362 Identities=12% Similarity=0.020 Sum_probs=213.6
Q ss_pred ChhHHHHHHHHHHh----cCChHHHHHHHhccCC-CChhhHHHHHHHHHc----cCCHHHHHHHHhhcCC-CChhhHHHH
Q 005642 139 DSVLGSSLVNLYGK----CGDFNSANQVLNMMKE-PDDFCLSALISGYAN----CGKMNDARRVFDRTTD-TSSVMWNSM 208 (686)
Q Consensus 139 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 208 (686)
++..+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|++..+ .++.++..|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 117 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNL 117 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56666777777776 6777888877776653 345556666666666 6777777777766543 345566666
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 005642 209 ISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS----LGFLEHGKQVHGHACKVGVIDDVIVASALLD 280 (686)
Q Consensus 209 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 280 (686)
...|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|.+.+++..+.| +...+..|..
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 191 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY 191 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 666666 667777777777776654 34555555555554 566777777777776654 4555666666
Q ss_pred HHHh----cCChhHHHHHHHhccc-CCchhHHHHHHHHHh----CCCHHHHHHHHhhCCC-CCchhHHHHHHHHHh----
Q 005642 281 TYSK----RGMPSDACKLFSELKV-YDTILLNTMITVYSS----CGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ---- 346 (686)
Q Consensus 281 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 346 (686)
+|.. .+++++|...|++... .+..++..+...|.. .++.++|...|++..+ .++..+..+...|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTS
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Confidence 6666 6677777777665542 234455555555554 4555555555555433 233444444444444
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHH
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI-----SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDA 421 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A 421 (686)
.+++++|+..|++..+.| +...+..+...+... +++++|...++...+.+
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---------------------- 326 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---------------------- 326 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----------------------
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----------------------
Confidence 455555555555554432 223333333333333 44444444444443332
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHH
Q 005642 422 LALFNEMRNTGVKPTIITFTAILSACDHCG---LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVN 494 (686)
Q Consensus 422 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 494 (686)
+...+..+...+...| +.++|.++|++..+. .++..+..+..+|.. .+++++|.+
T Consensus 327 --------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 327 --------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp --------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred --------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3344444555554434 667777777776632 356666677777766 677777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCC---CchhHHHHHHHH
Q 005642 495 LIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKVAERMIELDPE---NACAYIQLSSIF 549 (686)
Q Consensus 495 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 549 (686)
.|++.....+...+..+...|.. .++.++|...++++.+..|+ ++.+...++.++
T Consensus 389 ~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 389 WMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 77766323355666666666666 67777777777777776643 445555554443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=3.3e-17 Score=164.91 Aligned_cols=290 Identities=12% Similarity=0.038 Sum_probs=181.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 005642 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280 (686)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 280 (686)
++..+..++..+...|++++|+++|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 45556666666666677777777776666542 2233344445555566666666666666666653 234445555555
Q ss_pred HHHhcC-ChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHH
Q 005642 281 TYSKRG-MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 359 (686)
Q Consensus 281 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (686)
.+...| ++++|...|++... ....+...|..+...+...|++++|+..|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 150 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATT----------------------------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFT 150 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHT----------------------------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHH----------------------------hCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666665 55656655554321 1112345566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHH
Q 005642 360 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIIT 439 (686)
Q Consensus 360 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 439 (686)
+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..+
T Consensus 151 a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~ 195 (330)
T 3hym_B 151 AAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA----------------------------------PEDPFV 195 (330)
T ss_dssp HHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------------------------------TTCHHH
T ss_pred HHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----------------------------------CCChHH
Confidence 66542 2233444455556666666666666665554432 124566
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYH-------IDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSS 510 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ 510 (686)
+..+...+...|++++|...++++.+... .+....++..++.++.+.|++++|...+++.. ..| +...|..
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 275 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSA 275 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHH
Confidence 77777777778888888888877764211 12245677788888888888888888887762 233 5667778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH-hhcCCc
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF-ATSGEW 555 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 555 (686)
+...+...|++++|...++++++..|+++.++..++.++ ...|+.
T Consensus 276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 276 IGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888888888888888888888888888888888888877 455554
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=5.3e-15 Score=164.68 Aligned_cols=441 Identities=14% Similarity=0.150 Sum_probs=293.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CC-----cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005642 75 WNAMIEGFMKLGHKEKSLQLFNVMPQ-KN-----DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 148 (686)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~-----~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~ 148 (686)
-...+.+|...|.+.+|+++|++..- |. ...-+.++.+..+. +...+.......- ......+..
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd-------~~d~~eIA~ 1057 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLD-------NYDAPDIAN 1057 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhh-------hccHHHHHH
Confidence 34566778888999999999988763 22 23344456555555 3333333333322 122444777
Q ss_pred HHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 005642 149 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 228 (686)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 228 (686)
.+...|.+++|..+|++....+ ...+.++ ...+++++|.++.++... ..+|..+..++.+.|++++|++.|.+.
T Consensus 1058 Iai~lglyEEAf~IYkKa~~~~-~A~~VLi---e~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDVNT-SAVQVLI---EHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCCHH-HHHHHHH---HHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 7888899999999999875322 2223332 277889999999887744 678889999999999999999999653
Q ss_pred HHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHH
Q 005642 229 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 308 (686)
Q Consensus 229 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 308 (686)
-|...|..++.+|.+.|+++++.+++....+.. ++....+.++.+|.+.+++++..... ..++...|..
T Consensus 1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQ 1200 (1630)
T ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHH
Confidence 467778889999999999999999998887764 33333445888899998888644443 3556667778
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 388 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 388 (686)
+...|...|++++|..+|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|...|++..|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHH
Confidence 889999999999999999985 47889999999999999999998876 3567888888888888888888
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHH
Q 005642 389 EQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHC--GLVKEGQKWFDAMK 464 (686)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~ 464 (686)
...... +..+...+..++..|.+.|. +|+.+++...... +-....|.-+...+++. ++..++.++|..
T Consensus 1270 ~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~-- 1341 (1630)
T 1xi4_A 1270 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS-- 1341 (1630)
T ss_pred HHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 776543 33445566677777877776 7888887665332 22334554555444443 444455555543
Q ss_pred HhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHhCC--------------CCCCHHHHHHHHHHHHhcCChhHH
Q 005642 465 WQYHIDP------EIEHYSCMVDLFARAGCLNEAVNLIEQMP--------------FEADVGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 465 ~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~p~~~~~~~li~~~~~~g~~~~A 524 (686)
+.+++| +...|.-++-.|.+.|+++.|...+-+.. ...++..|...+.-|... ...+
T Consensus 1342 -rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~--~P~~ 1418 (1630)
T 1xi4_A 1342 -RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLL 1418 (1630)
T ss_pred -hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh--ChHH
Confidence 234444 35667778888888888888774433221 222455555555555522 2333
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 525 RKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 525 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+.-+...+. |. . -+......+.+.|+..-+..+++.+...
T Consensus 1419 lndLl~~l~--~r-l-D~~R~V~l~~~~~~l~lik~yl~~vq~~ 1458 (1630)
T 1xi4_A 1419 LNDLLMVLS--PR-L-DHTRAVNYFSKVKQLPLVKPYLRSVQNH 1458 (1630)
T ss_pred HHHHHHHhh--hc-C-ChHHHHHHHHHcCChHHhHHHHHHHHHh
Confidence 333333332 21 0 1334555666677777777776666543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=7.6e-17 Score=161.54 Aligned_cols=278 Identities=12% Similarity=0.144 Sum_probs=135.7
Q ss_pred HhcCCcHHHHHHhccCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHH
Q 005642 52 MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHI 131 (686)
Q Consensus 52 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~ 131 (686)
-+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++... ++++.+...++..
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~--g~~EeAi~yl~~a 87 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTS--GNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 46788999999999996664 8999999999999999999999764 6667888899988876 7899999988888
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 005642 132 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 211 (686)
Q Consensus 132 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 211 (686)
++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|++++|...|.++ ..|..++.+
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~ 157 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAST 157 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHH
Confidence 775 55688899999999999999999988864 77789999999999999999999999987 589999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHH
Q 005642 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 291 (686)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 291 (686)
+.+.|++++|++.++++ .++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|++++|
T Consensus 158 L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHH
Confidence 99999999999999998 3789999999999999999999655443 222333355689999999999999
Q ss_pred HHHHHhcccCC---chhHHHHHHHHHh--CCCHHHHHHHHhhCCC--------CCchhHHHHHHHHHhCCChhhHHHH
Q 005642 292 CKLFSELKVYD---TILLNTMITVYSS--CGRIEDAKHIFRTMPN--------KSLISWNSMIVGLSQNGSPIEALDL 356 (686)
Q Consensus 292 ~~~~~~~~~~~---~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 356 (686)
..+++.....+ ...|+-|...|++ .+++.+.++.|..-.. .+...|..+...|.+.++++.|...
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 99999887443 4467777776665 4567777777775544 2567899999999999999988763
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.6e-17 Score=166.43 Aligned_cols=286 Identities=12% Similarity=0.103 Sum_probs=92.9
Q ss_pred hcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005642 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 231 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (686)
+.|++++|.++++++..|+ +|+.++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4566777777777764443 6666666666666666666666543 34446666666666666666666655554442
Q ss_pred CCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHH
Q 005642 232 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311 (686)
Q Consensus 232 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 311 (686)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+++.|...|++++|...|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 3345555556666666666666555553 244456666666666666666666666644 35555555
Q ss_pred HHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 005642 312 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 391 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 391 (686)
++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..|+ -...++..|.+.|.++++..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555555555 245555555555555555555533332211 1222 223444555555555555555
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhcCC
Q 005642 392 FARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC--GLVKEGQKWFDAMKWQYHI 469 (686)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~ 469 (686)
++...... +-....|+.+..++++- ++..+.++.|. ++.++
T Consensus 230 Le~aL~le----------------------------------~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini 272 (449)
T 1b89_A 230 LEAALGLE----------------------------------RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNI 272 (449)
T ss_dssp HHHHTTST----------------------------------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCH
T ss_pred HHHHhCCc----------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcC
Confidence 55443222 22334444444444443 23333333333 23344
Q ss_pred CC------ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 470 DP------EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 470 ~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+| +...|..++-.|.+.++++.|...+-+.
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 44 3567888888888888888888766555
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.2e-16 Score=160.71 Aligned_cols=259 Identities=12% Similarity=0.040 Sum_probs=193.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHH
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGL 344 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 344 (686)
+...+..++..+...|++++|..+|+++. +.+...+..++.++...|++++|...++++.+ .++..|..+...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 33444455555555566666666665554 22333444455555555555555555555433 3556777777888
Q ss_pred HhCC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHH
Q 005642 345 SQNG-SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA 423 (686)
Q Consensus 345 ~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~ 423 (686)
...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------ 155 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM------------------------ 155 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc------------------------
Confidence 8888 7888888888877652 3345667777777888888888888777766543
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 005642 424 LFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-F 501 (686)
Q Consensus 424 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 501 (686)
+.+...+..+...+...|++++|.+.++++. ...| +...+..++..+...|++++|...++++. .
T Consensus 156 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 156 ----------KGCHLPMLYIGLEYGLTNNSKLAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp ----------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1134556668888999999999999999998 3445 68899999999999999999999998872 1
Q ss_pred ----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 502 ----------EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 502 ----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.....|..+...+...|++++|...++++++..|+++.++..++.++...|++++|.+.++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 334678999999999999999999999999999999999999999999999999999999995554
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=5.1e-15 Score=157.77 Aligned_cols=354 Identities=11% Similarity=0.066 Sum_probs=223.7
Q ss_pred CChhhHHHHHHHHHc----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHH
Q 005642 169 PDDFCLSALISGYAN----CGKMNDARRVFDRTTD-TSSVMWNSMISGYIS----NNEDTEALLLFHKMRRNGVLEDAST 239 (686)
Q Consensus 169 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 239 (686)
.+...+..+...|.. .+++++|...|++..+ .++.++..|...|.. .+++++|++.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 344555555555555 6667777776665443 345566666666666 666777777776666643 3444
Q ss_pred HHHHHHHHHc----cCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhHHHHHHHhccc-CCchhHHHHH
Q 005642 240 LASVLSACSS----LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDACKLFSELKV-YDTILLNTMI 310 (686)
Q Consensus 240 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 310 (686)
+..+...+.. .+++++|...++...+.| +...+..|..+|.. .+++++|...|++..+ .+..++..+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555 566666666666666654 34455555666655 5566666666665432 2334444444
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChH
Q 005642 311 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLE 386 (686)
Q Consensus 311 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~ 386 (686)
..|... ....+++++|+..|++..+.| +...+..+...+.. .++++
T Consensus 191 ~~y~~g---------------------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 191 YMYSRG---------------------------LGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHhcC---------------------------CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 444440 000444445555554444432 23333334433332 44455
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHh----chh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHH
Q 005642 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCK----CGY--DALALFNEMRNTGVKPTIITFTAILSACDHC-----GLVKE 455 (686)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~ 455 (686)
+|...|+...+.+ +...+..|..+|.. .++ +|+..|++..+.| +...+..+...+... +++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 5555555444432 12233333333333 222 5555555555443 455666677777666 89999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHH
Q 005642 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG---CLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKVA 528 (686)
Q Consensus 456 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 528 (686)
|..+|++..+ .+ +...+..+..+|...| ++++|.+.|++.....+...+..+...|.. .+++++|...+
T Consensus 315 A~~~~~~a~~-~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 315 AISWYTKSAE-QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHH-TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHh-cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999884 22 5677888888888867 789999999988434578888999999988 89999999999
Q ss_pred HHHHccCCCCchhHHHHHHHHhh----cCCcchHHHHHHHHHhcCC
Q 005642 529 ERMIELDPENACAYIQLSSIFAT----SGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 529 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 570 (686)
+++.+.. ++.++..++.+|.. .+++++|..++++..+.+.
T Consensus 391 ~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 391 RKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999854 57789999999998 8999999999999998764
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=7.2e-16 Score=163.70 Aligned_cols=382 Identities=9% Similarity=-0.016 Sum_probs=203.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHhhcCC------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-
Q 005642 171 DFCLSALISGYANCGKMNDARRVFDRTTD------------TSSVMWNSMISGYISNNEDTEALLLFHKMRRN-----G- 232 (686)
Q Consensus 171 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 232 (686)
...|+.+...+...|++++|++.|++..+ ....+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45677777777778888888777765321 12456777777777778888887777776541 0
Q ss_pred CCc-CHHHHHHHHHHHHc--cCChhhHHHHHHHHHHcCCCchHHHHHHHHHH---HHhcCChhHHHHHHHhcc---cCCc
Q 005642 233 VLE-DASTLASVLSACSS--LGFLEHGKQVHGHACKVGVIDDVIVASALLDT---YSKRGMPSDACKLFSELK---VYDT 303 (686)
Q Consensus 233 ~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~---~~~~ 303 (686)
..+ ...++.....++.. .+++++|...|++.++..+ .++..+..+..+ +...++.++|+..+++.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 111 23445444444433 3457777777777777542 234444444443 334566666666666544 2233
Q ss_pred hhHHHHHHHHHh----CCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 005642 304 ILLNTMITVYSS----CGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 376 (686)
Q Consensus 304 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 376 (686)
.++..+...+.. .++.++|.+.+++... .+...+..+...|...|++++|+..|++..+.. +-+..++..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 444444433333 3445555555554432 233455555566666666666666666555431 11233333333
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005642 377 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEG 456 (686)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 456 (686)
.++...+....+.. ....... .......+.|...+++..+.... +..++..+...+...|++++|
T Consensus 289 ~~y~~~~~~~~~~~----------~~~~~~~----~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 289 CCYRAKVFQVMNLR----------ENGMYGK----RKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHC----------------CH----HHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhhHH----------HHHHHHH----HHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHH
Confidence 33221110000000 0000000 00000111677777777665422 445677888899999999999
Q ss_pred HHHHHHHHHhcCCCCCh--hHHHHHHHH-HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 005642 457 QKWFDAMKWQYHIDPEI--EHYSCMVDL-FARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMI 532 (686)
Q Consensus 457 ~~~~~~~~~~~~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 532 (686)
.+.|++..+ ....|.. ..+..+... +...|++++|+..|++. .+.|+...... ....+..++++.+
T Consensus 354 ~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l 423 (472)
T 4g1t_A 354 EYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHH
Confidence 999999883 2322221 223334333 35789999999999887 46666443322 2344567788888
Q ss_pred ccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccce
Q 005642 533 ELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWA 579 (686)
Q Consensus 533 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 579 (686)
+.+|+++.+|..++.+|...|++++|.+.+++..+.+.......+|+
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 89999999999999999999999999999999988766544443343
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1e-14 Score=157.14 Aligned_cols=408 Identities=9% Similarity=0.044 Sum_probs=250.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISG 211 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 211 (686)
+-|...|..++. +.+.|++++|+.+|+++.+ | +...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 347778888888 4778999999999999875 4 345678888888888999999999988765 566677776653
Q ss_pred H-HhcCChhHHHH----HHHHHHHC-CCCc-CHHHHHHHHHHHHc---------cCChhhHHHHHHHHHHcCCCchHHHH
Q 005642 212 Y-ISNNEDTEALL----LFHKMRRN-GVLE-DASTLASVLSACSS---------LGFLEHGKQVHGHACKVGVIDDVIVA 275 (686)
Q Consensus 212 ~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~ 275 (686)
. ...|+.++|.+ +|++.+.. |..| +...|...+..... .|+++.|..+|+..++....+....|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34577777665 66666542 4444 45566666655543 57788888888888873212222344
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhh-------CC------CCC--------c
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT-------MP------NKS--------L 334 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~~--------~ 334 (686)
..........|. ..+..++.+ +.++++.|..++.. +. .|+ .
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 333221111110 011111110 11223333332222 10 111 1
Q ss_pred hhHHHHHHHHHhC----CCh----hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCChH-------HHHHHH
Q 005642 335 ISWNSMIVGLSQN----GSP----IEALDLFCNMNKLDLRMDKFSLASVISACAN-------ISSLE-------LGEQVF 392 (686)
Q Consensus 335 ~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~ 392 (686)
..|...+...... ++. ..+..+|++.... .+.+...|......+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 2344443322221 122 2566677777664 23345566666655554 57765 677777
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 005642 393 ARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPT-I-ITFTAILSACDHCGLVKEGQKWFDAMKWQYH 468 (686)
Q Consensus 393 ~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 468 (686)
++.++.-.+.+...|..++..+.+.|+ +|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--- 384 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--- 384 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Confidence 776652234456667777777766665 677777777764 332 2 4677777777778888888888888772
Q ss_pred CCC-ChhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch----
Q 005642 469 IDP-EIEHYSCMVDL-FARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC---- 540 (686)
Q Consensus 469 ~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~---- 540 (686)
..| +...+...+.. +...|++++|..+|++. ...| +...|..++..+.+.|+.++|..+++++++..|.++.
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 233 33333333322 33578888888888876 3334 4677888888888888888888888888887665543
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 541 AYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.|...+......|+.+.+..+.+++.+.-
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67777777777888888888888777643
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=8.7e-15 Score=157.64 Aligned_cols=401 Identities=11% Similarity=0.052 Sum_probs=243.1
Q ss_pred CcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHH
Q 005642 102 NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALIS 179 (686)
Q Consensus 102 ~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 179 (686)
+...|..++.. .+. ++.+.+..+++.+++.. +.+...|..++..+.+.|++++|+.+|+++.+ |++..|..++.
T Consensus 12 ~~~~w~~l~~~-~~~--~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQN--QPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHS--SCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHh--CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 55678888874 444 68999999999999863 45778899999999999999999999999985 77777777765
Q ss_pred H-HHccCCHHHHHH----HHhhcC-----C-CChhhHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCcCHHH
Q 005642 180 G-YANCGKMNDARR----VFDRTT-----D-TSSVMWNSMISGYIS---------NNEDTEALLLFHKMRRNGVLEDAST 239 (686)
Q Consensus 180 ~-~~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~ 239 (686)
. ....|+.++|.+ +|++.. . .+...|...+....+ .|+++.|..+|++.++....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 3 345678777765 666542 1 356788888877655 7899999999999987311111233
Q ss_pred HHHHHHHHH-------------ccCChhhHHHHHHHHH------HcC---CCch--------HHHHHHHHHHHHhc----
Q 005642 240 LASVLSACS-------------SLGFLEHGKQVHGHAC------KVG---VIDD--------VIVASALLDTYSKR---- 285 (686)
Q Consensus 240 ~~~ll~~~~-------------~~~~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~l~~~~~~~---- 285 (686)
|........ ..+++..|..++.... +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 333222111 1223344444443311 110 1221 12233222221111
Q ss_pred CChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHh-------CCChh----
Q 005642 286 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ-------NGSPI---- 351 (686)
Q Consensus 286 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~---- 351 (686)
++.+. ..+.+..+|++... .++..|...+..+.+ .|+++
T Consensus 248 ~~~~~---------------------------~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 248 EDQTL---------------------------ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp SCSHH---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred Ccchh---------------------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 11100 00133333333332 233444444444443 45544
Q ss_pred ---hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHH
Q 005642 352 ---EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFN 426 (686)
Q Consensus 352 ---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~ 426 (686)
+|..+|++..+.-.+-+...+..++..+.+.|++++|..+|+.+++.........|..++..+.+.|+ +|..+|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55555555553211223444455555555555555565555555553211112355555555555554 5666666
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----
Q 005642 427 EMRNTGVKPTIITFTAILS-ACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP---- 500 (686)
Q Consensus 427 ~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 500 (686)
+..+.... +...|...+. .+...|+.++|..+|+...+. .| ++..|..++..+.+.|+.++|..+|++..
T Consensus 381 ~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 66543211 2223322222 233589999999999998843 35 68899999999999999999999999872
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 501 FEAD--VGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 501 ~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
..|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2332 457888899889999999999999999998884
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.7e-16 Score=162.40 Aligned_cols=273 Identities=10% Similarity=0.052 Sum_probs=189.5
Q ss_pred CChhHHHH-HHHhcc---cC----CchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHH
Q 005642 286 GMPSDACK-LFSELK---VY----DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEAL 354 (686)
Q Consensus 286 g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 354 (686)
|++++|.. .|++.. +. +...+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 45555555 555433 11 233455556666666666666666655543 23456666666677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHH---------------HHHHHHHhchh
Q 005642 355 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST---------------SLVDFYCKCGY 419 (686)
Q Consensus 355 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~li~~~~~~~~ 419 (686)
..|+++.+.. +.+..++..+...+...|++++|...++.+.+........... .+...+ ..|+
T Consensus 119 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 196 (368)
T 1fch_A 119 SALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL 196 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc
Confidence 7777666542 3355566666666777777777777777666654322211111 122222 4554
Q ss_pred --HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHH
Q 005642 420 --DALALFNEMRNTGVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNL 495 (686)
Q Consensus 420 --~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 495 (686)
+|...|+++.+..... +..++..+...+...|++++|...++++.+. .| +...+..++.++.+.|++++|...
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888877654332 5788899999999999999999999998842 34 678999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-----------chhHHHHHHHHhhcCCcchHHHHH
Q 005642 496 IEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN-----------ACAYIQLSSIFATSGEWEKSSLIR 562 (686)
Q Consensus 496 ~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~ 562 (686)
|+++ ...| +...+..+...+...|++++|...++++++..|++ ..+|..++.+|...|++++|..++
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9987 3344 57889999999999999999999999999988877 788999999999999999999987
Q ss_pred H
Q 005642 563 D 563 (686)
Q Consensus 563 ~ 563 (686)
+
T Consensus 354 ~ 354 (368)
T 1fch_A 354 A 354 (368)
T ss_dssp T
T ss_pred H
Confidence 6
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=9.2e-16 Score=157.01 Aligned_cols=297 Identities=11% Similarity=0.056 Sum_probs=199.1
Q ss_pred HccCCHHHHHH-HHhhcCC---C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCh
Q 005642 182 ANCGKMNDARR-VFDRTTD---T----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 253 (686)
Q Consensus 182 ~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 253 (686)
...|++++|.. .|++... . +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34567777777 7765443 1 34568888888999999999999999998863 45677888888888899999
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCC---chhHHHHHHHHHhCCCHHHHHHHHhhCC
Q 005642 254 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMP 330 (686)
Q Consensus 254 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~ 330 (686)
++|...++.+.+.. +.+..++..+..+|...|++++|...|+++...+ ...+..+... . ...
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~-------~~~ 179 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------A-------GGA 179 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------h-------hhh
Confidence 99999999888875 4467788888888999999999998888765221 1111111000 0 000
Q ss_pred CCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 005642 331 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 409 (686)
Q Consensus 331 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 409 (686)
.+ ...+..+...+ ..|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+..
T Consensus 180 ~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------- 247 (368)
T 1fch_A 180 GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---------- 247 (368)
T ss_dssp -------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence 00 01111222333 7788888888888887753221 46778888888888889999988888877653
Q ss_pred HHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 005642 410 LVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC 488 (686)
Q Consensus 410 li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 488 (686)
+.+..++..+...+...|++++|...|+++.+ +.| +...+..++.+|.+.|+
T Consensus 248 ------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 248 ------------------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp ------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTC
T ss_pred ------------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCC
Confidence 12456677777777788888888888888763 234 56777788888888888
Q ss_pred hHHHHHHHHhCC-CCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 489 LNEAVNLIEQMP-FEA------------DVGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 489 ~~~A~~~~~~~~-~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
+++|...|+++. ..| ....|..+..++...|+.++|..++++.++
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 888888877761 111 156788888888888888888877765554
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=4e-15 Score=146.09 Aligned_cols=246 Identities=10% Similarity=0.014 Sum_probs=174.9
Q ss_pred HHHhcCChhHHHHHHHhcccCCc----hhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHH
Q 005642 281 TYSKRGMPSDACKLFSELKVYDT----ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356 (686)
Q Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 356 (686)
-....|+++.|+..++.....++ .....+.++|...|+++.|...++....++..++..+...+...++.++|++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 34456777777777766553322 23345567777777777777777665444556777777788888888888888
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC
Q 005642 357 FCNMNKLDLRMDK-FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP 435 (686)
Q Consensus 357 ~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p 435 (686)
++++...+..|+. ..+..+...+...|++++|.+.++. +.
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------------------------------------~~ 128 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------------------------------------GD 128 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------------------------------------CC
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------------------------------------CC
Confidence 8888776655543 4445556777788888877777654 12
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE---HYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSS 510 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 510 (686)
+...+..++..+.+.|++++|.+.++++.+. .|+.. ....++..+...|++++|...|+++. .+.+...|+.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~ 205 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 5667777777888888888888888888743 35432 11233344555688888888888872 3446777888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch-HHHHHHHHHhc
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK-SSLIRDIMREK 568 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 568 (686)
+..++...|++++|+..++++++.+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888876 46788877764
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=4.6e-16 Score=159.16 Aligned_cols=258 Identities=9% Similarity=-0.034 Sum_probs=161.0
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 303 TILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379 (686)
Q Consensus 303 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 379 (686)
...+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34466666666667777777766666643 345677777777777777777777777777652 33466777777777
Q ss_pred HccCChHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHHhchh--HHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 005642 380 ANISSLELGEQVFARVTIIGLDSD---------QIISTSLVDFYCKCGY--DALALFNEMRNTGVK-PTIITFTAILSAC 447 (686)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~-p~~~~~~~ll~~~ 447 (686)
...|++++|...++.+.+...... ...+..+...|...|+ +|...++++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 777777777777777766431100 1112223445555555 666666666554322 1456667777777
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~ 525 (686)
...|++++|.+.|+++.+. .+.+..++..++.+|.+.|++++|...|+++ ...| +...|..+...+...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777777776632 1225667777777777777777777777766 2334 3666777777777777777777
Q ss_pred HHHHHHHccCCC------------CchhHHHHHHHHhhcCCcchHHHHHH
Q 005642 526 KVAERMIELDPE------------NACAYIQLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 526 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (686)
..+++++++.|+ +..+|..++.++...|+.+.+.++.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777776655 24567777777777777776666554
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=1.7e-15 Score=154.98 Aligned_cols=272 Identities=9% Similarity=-0.015 Sum_probs=183.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 005642 201 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 280 (686)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 280 (686)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888888888888888888888752 4467778888888888888888888888888864 345777888888
Q ss_pred HHHhcCChhHHHHHHHhcccCCch---hHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHH
Q 005642 281 TYSKRGMPSDACKLFSELKVYDTI---LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 357 (686)
Q Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (686)
+|...|++++|...|+++...++. .+..+. .....+..+...+...|++++|+..|
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------------------CCHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 888888888888888765421111 010000 11233445567777788888888888
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCC
Q 005642 358 CNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT 436 (686)
Q Consensus 358 ~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~ 436 (686)
+++.+.... ++..++..+...+...|++++|...++.+.+.. +.+
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~ 246 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR----------------------------------PED 246 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------------TTC
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------CCC
Confidence 888775322 156777788888888888888888888777653 124
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-----------
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA----------- 503 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----------- 503 (686)
..++..+...+...|++++|.+.|+++.+ ..| +..++..++.+|.+.|++++|...|+++. ..|
T Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 323 (365)
T 4eqf_A 247 YSLWNRLGATLANGDRSEEAVEAYTRALE---IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP 323 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchh
Confidence 56677777777778888888888887763 234 46777778888888888888888777761 111
Q ss_pred --CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 005642 504 --DVGMWSSILRGCVAHGDKGLGRKVAERMI 532 (686)
Q Consensus 504 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 532 (686)
+...|..+..++...|+.+.+..+.++.+
T Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 324 AISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp ---CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 24567788888888888887777665533
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=4.6e-15 Score=157.47 Aligned_cols=378 Identities=11% Similarity=0.018 Sum_probs=214.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCC-----------C-ChhhHHHHHHHHHccCCHHHHHHHHhhcCC-----
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----------P-DDFCLSALISGYANCGKMNDARRVFDRTTD----- 199 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 199 (686)
......||.|...+...|++++|++.|++..+ | ...+|+.+...|...|++++|...+++..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 34466788899999999999999998877642 2 245788889999999999999888875432
Q ss_pred ------CChhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCcC-HHHHHHHHHH---HHccCChhhHHHHHHHHHHcC
Q 005642 200 ------TSSVMWNSMISGYISN--NEDTEALLLFHKMRRNGVLED-ASTLASVLSA---CSSLGFLEHGKQVHGHACKVG 267 (686)
Q Consensus 200 ------~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~g 267 (686)
....++..+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.+++.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1244566665555553 5689999999998874 454 4444444443 345677888999998888875
Q ss_pred CCchHHHHHHHHHHHHh----cCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC--C-CchhH
Q 005642 268 VIDDVIVASALLDTYSK----RGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISW 337 (686)
Q Consensus 268 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 337 (686)
+.+..++..+...+.. .|++++|.+.+++.. +.+..++..+...|...|++++|...+++..+ | +..++
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 3355556555555444 467788999888765 44567888899999999999999999988765 3 34566
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 005642 338 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 417 (686)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 417 (686)
..+...|...+....+.. ...........+..+.|...++.+.+.. +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 666665543211000000 0000000011122344444455444433 22333444445555555
Q ss_pred hh--HHHHHHHHHHHCCCCCCH--HHHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005642 418 GY--DALALFNEMRNTGVKPTI--ITFTAILS-ACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 418 ~~--~A~~~~~~m~~~~~~p~~--~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (686)
|+ +|...|++..+....|.. ..+..+.. ...+.|+.++|++.|++.. .+.|+........ ..+
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l 415 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKL 415 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHH
Confidence 54 555555555544333222 12222222 3456799999999999987 3556543322222 223
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 493 VNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 493 ~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
.+++++. ...| +..+|..+...+...|++++|+..|++++++.|.++.+...++
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3333333 2233 5778999999999999999999999999999988877655443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=3.3e-15 Score=149.90 Aligned_cols=266 Identities=8% Similarity=-0.063 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHh
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ 346 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 346 (686)
..+..+...+...|++++|...|+++. +.+...+..+..++...|++++|...++++.+ .+..++..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 344556666666777777777666554 22334455555555555555555555554432 133444445555555
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHH-HH-HHHhchh--HH
Q 005642 347 NGSPIEALDLFCNMNKLDLRMDKF-SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL-VD-FYCKCGY--DA 421 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~~~--~A 421 (686)
.|++++|...++++.+. .|+.. .+..+...+ |+......+ .. .+...|+ +|
T Consensus 102 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS--QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence 55555555555555443 11111 111110000 000000000 11 1233333 56
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005642 422 LALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-P 500 (686)
Q Consensus 422 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 500 (686)
...++++.+... .+..++..+...+...|++++|.+.++++.+. .+.+...+..++..+...|++++|...++++ .
T Consensus 158 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 158 RTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666555432 26778888999999999999999999998842 2236788999999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------------CchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 501 FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE------------NACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 501 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
..| +...|..+...+...|++++|...++++++..|+ ++.++..++.++...|++++|..++++.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334 5788999999999999999999999999999998 6888999999999999999999988743
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=1.2e-14 Score=142.73 Aligned_cols=271 Identities=8% Similarity=-0.010 Sum_probs=174.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 005642 209 ISGYISNNEDTEALLLFHKMRRNGVLEDA--STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 286 (686)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 286 (686)
|+-....|++..|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445567888888887776533 34443 3445566777788888777765543 23556667777777777777
Q ss_pred ChhHHHHHHHhccc----C-CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 287 MPSDACKLFSELKV----Y-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 287 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
+.++|.+.++++.. | +...+..+..++...|++++|.+.+++ ..++..+..++..+.+.|++++|...|+++.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888877776531 2 334455555666666666666666665 2344555555555555555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHH
Q 005642 362 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFT 441 (686)
Q Consensus 362 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 441 (686)
+. .|+... . ....
T Consensus 158 ~~--~p~~~~-~----------------------------------------------------------------~l~~ 170 (291)
T 3mkr_A 158 DQ--DEDATL-T----------------------------------------------------------------QLAT 170 (291)
T ss_dssp HH--CTTCHH-H----------------------------------------------------------------HHHH
T ss_pred hh--CcCcHH-H----------------------------------------------------------------HHHH
Confidence 43 122100 0 0011
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005642 442 AILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG 519 (686)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g 519 (686)
..+..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|...|+++ ...| +..++..++..+...|
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 1222334568888899999888843 3347888888888999999999999998886 3445 5778888998888999
Q ss_pred ChhH-HHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 520 DKGL-GRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 520 ~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
+.++ +...++++++.+|+++.+. ....+.+.++++..
T Consensus 249 ~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 249 KPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 8865 5788899999999887643 34445555555544
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=2.6e-14 Score=143.37 Aligned_cols=278 Identities=10% Similarity=-0.053 Sum_probs=178.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 281 (686)
...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 4456677777888888888888888877652 3466677777777888888888888888887764 3456677778888
Q ss_pred HHhcCChhHHHHHHHhcccC---CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHH-HH-HHHhCCChhhHHHH
Q 005642 282 YSKRGMPSDACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM-IV-GLSQNGSPIEALDL 356 (686)
Q Consensus 282 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~ 356 (686)
|...|++++|...++++... +...+..+.... ++......+ .. .+...|++++|...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 88888888888888765522 111111110000 001111112 11 25666777888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCC
Q 005642 357 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT 436 (686)
Q Consensus 357 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~ 436 (686)
++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~ 205 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR----------------------------------PDD 205 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTC
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------------------CCc
Confidence 88777652 3356677777778888888888888888776543 114
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----------
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD----------- 504 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------- 504 (686)
..++..+...+...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|.+.++++ ...|+
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 283 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE 283 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhh
Confidence 455666666777777777777777776632 1224666777777777777777777777665 12222
Q ss_pred --HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 505 --VGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 505 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
...|..+..++...|+.++|...++++++..|
T Consensus 284 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 284 ATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 55677777777777777777777766655433
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=169.90 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHH---HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMN---KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 411 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 411 (686)
.+|+++|.+|++.|+.++|.++|++|. ..|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..+|++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 578888888888888888888887765 34678888888888888888888888888888888888888888888888
Q ss_pred HHHHhchh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC------hhHHHHHHHH
Q 005642 412 DFYCKCGY---DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE------IEHYSCMVDL 482 (686)
Q Consensus 412 ~~~~~~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~ 482 (686)
+++++.|. +|.++|++|.+.|+.||..+|++++.++.+. ..++..+++. .++.|+ ..+...|.+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~--P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVK--PTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGC--CCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhC--cccCCCCCCcccccchHHHHHH
Confidence 88888774 5778888888888888888888777655443 3444444443 233332 3344455666
Q ss_pred HHhcC
Q 005642 483 FARAG 487 (686)
Q Consensus 483 ~~~~g 487 (686)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66544
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=5.3e-13 Score=139.95 Aligned_cols=270 Identities=10% Similarity=0.050 Sum_probs=176.6
Q ss_pred ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhH---HHHHHHhcc-cCCchhHHHHHHHHHhCC----CHHHHH
Q 005642 252 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD---ACKLFSELK-VYDTILLNTMITVYSSCG----RIEDAK 323 (686)
Q Consensus 252 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~ 323 (686)
++++|...+++..+.|... .+..|...|...+..+. +...+.... ..++..+..|...|...+ ..+.+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 4445555555555544221 33344444444433222 222222222 223445555555555555 233444
Q ss_pred HHHhhCCCCCchhHHHHHHHHHhCC---ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CChHHHHHHHHHHH
Q 005642 324 HIFRTMPNKSLISWNSMIVGLSQNG---SPIEALDLFCNMNKLDLRMDKFSLASVISACANI----SSLELGEQVFARVT 396 (686)
Q Consensus 324 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~ 396 (686)
.++......++..+..+...|...| +.++|+..|++..+.| .++...+..+...+... +++++|...|+...
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 4555556666668888888888888 7888888888888775 33444444555555444 56777777776654
Q ss_pred HhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHHhcCCCCCh
Q 005642 397 IIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSA-C--DHCGLVKEGQKWFDAMKWQYHIDPEI 473 (686)
Q Consensus 397 ~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~p~~ 473 (686)
.| ++..+..+... + ...+++++|.++|++..+ .| +.
T Consensus 245 -~g------------------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~ 283 (452)
T 3e4b_A 245 -PG------------------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QP 283 (452)
T ss_dssp -GG------------------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CH
T ss_pred -CC------------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CH
Confidence 22 34444555544 3 458899999999999883 33 67
Q ss_pred hHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 474 EHYSCMVDLFARAG-----CLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 474 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
..+..|..+|. .| ++++|.+.|++.. .-+...+..+...|.. ..+.++|...++++.+ +.++.+...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~ 359 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFA 359 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHH
Confidence 77888888887 55 9999999999988 5577888888877765 3489999999999986 445677889
Q ss_pred HHHHHhh----cCCcchHHHHHHHHHhcCC
Q 005642 545 LSSIFAT----SGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 545 l~~~~~~----~g~~~~a~~~~~~~~~~~~ 570 (686)
++.+|.. ..++++|..++++..+.|.
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9998875 4689999999999888764
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=164.38 Aligned_cols=146 Identities=12% Similarity=0.113 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHhhc-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 005642 172 FCLSALISGYANCGKMNDARRVFDRT-------TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 244 (686)
Q Consensus 172 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 244 (686)
.+|+++|++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 47888888888888888888888553 35889999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccC-----CchhHHHHHHHHHhCC
Q 005642 245 SACSSLGFL-EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-----DTILLNTMITVYSSCG 317 (686)
Q Consensus 245 ~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 317 (686)
.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...++..++..+ .+.+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999999988776655444444443333321 1223344555555444
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.3e-13 Score=129.10 Aligned_cols=196 Identities=13% Similarity=0.033 Sum_probs=143.8
Q ss_pred CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
++..+..+...+.+.|++++|+..|++..+. -+.+...+..+..++.+.|++++|...++++++... .
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~---------- 71 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-R---------- 71 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----------
Confidence 4556777777777888888888888877764 233456667777777788888888887777776541 1
Q ss_pred HHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHH
Q 005642 413 FYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC-----------GLVKEGQKWFDAMKWQYHIDP-EIEHYSCMV 480 (686)
Q Consensus 413 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 480 (686)
+...+..+...+... |++++|+..+++..+ +.| +...+..+.
T Consensus 72 -----------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg 125 (217)
T 2pl2_A 72 -----------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRG 125 (217)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 333444444444444 999999999999883 456 688899999
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHH
Q 005642 481 DLFARAGCLNEAVNLIEQMP-FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS 559 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 559 (686)
.++...|++++|+..|++.. ...+...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred HHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999999872 22678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 005642 560 LIRDIMR 566 (686)
Q Consensus 560 ~~~~~~~ 566 (686)
+.+++..
T Consensus 206 ~~~~~~~ 212 (217)
T 2pl2_A 206 RAAALEH 212 (217)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 9988553
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.1e-13 Score=131.53 Aligned_cols=220 Identities=15% Similarity=0.071 Sum_probs=154.0
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--cc----hhHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD--SD----QIISTS 409 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 409 (686)
.|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555543 44455555555555555555555555555443211 01 344555
Q ss_pred HHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhc
Q 005642 410 LVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARA 486 (686)
Q Consensus 410 li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 486 (686)
+...|...|+ +|...|++..+.. |+. ..+...|++++|...++++.. ..| +...+..++..+...
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHh
Confidence 5555555554 5555555555432 332 245566888999999998873 345 577888999999999
Q ss_pred CChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHH
Q 005642 487 GCLNEAVNLIEQMP-F-EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564 (686)
Q Consensus 487 g~~~~A~~~~~~~~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (686)
|++++|...|+++. . +.+...|..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.+.+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999872 3 336788999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcC
Q 005642 565 MREKH 569 (686)
Q Consensus 565 ~~~~~ 569 (686)
..+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87643
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=2.4e-13 Score=142.54 Aligned_cols=368 Identities=14% Similarity=0.015 Sum_probs=212.8
Q ss_pred HHHHHHhcCChHHHHHHHhccCC-CChhhHHHHHHHHHccCCH---HHHHHHHhhcCCCChhhHHHHHHHHHhcC-----
Q 005642 146 LVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYANCGKM---NDARRVFDRTTDTSSVMWNSMISGYISNN----- 216 (686)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 216 (686)
+...+.+.|++++|.+.|++..+ .+...+..+...|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 34444555666666666665543 2333444444445555555 66777776665555666666666555554
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCh---hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh----
Q 005642 217 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL---EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS---- 289 (686)
Q Consensus 217 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~---- 289 (686)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+......|. ......|...|...+.++
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 6678888888887765332 444455555544332 344555555555543 344556677777777444
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHhCC---CHHHHHHHHhhCCCC---CchhHHHHHHHHHhC----CChhhHHHHHHH
Q 005642 290 DACKLFSELKVYDTILLNTMITVYSSCG---RIEDAKHIFRTMPNK---SLISWNSMIVGLSQN----GSPIEALDLFCN 359 (686)
Q Consensus 290 ~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~~~~~ 359 (686)
.+..+++.....++..+..|...|...| +.++|.+.|++..+. +...+..+...|... +++++|+.+|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 4445555555667778888888888888 888888888877553 223346677777554 688999999999
Q ss_pred HHHCCCCCCHHHHHHHHHH-H--HccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCC
Q 005642 360 MNKLDLRMDKFSLASVISA-C--ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPT 436 (686)
Q Consensus 360 m~~~g~~p~~~t~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~ 436 (686)
.. . -+...+..+... + ...+++++|...|++..+.| +
T Consensus 243 aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------------------------------------~ 282 (452)
T 3e4b_A 243 IA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------------------------------------Q 282 (452)
T ss_dssp HG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------------------------------------C
T ss_pred Hc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------------------------------------C
Confidence 87 3 344455555554 3 45788888888888777665 3
Q ss_pred HHHHHHHHHHHhccC-----CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHH
Q 005642 437 IITFTAILSACDHCG-----LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVNLIEQMPFEADVGM 507 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g-----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~ 507 (686)
...+..|...|. .| ++++|.++|++.. .-++.....|..+|.. ..++++|...|++....-+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 444444444444 33 7888888887654 2366777777777776 3488888888887733334445
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHH--hhcCCcchHHHHHHHHHh
Q 005642 508 WSSILRGCVA----HGDKGLGRKVAERMIELDPENACAYIQLSSIF--ATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 508 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 567 (686)
...+...|.. ..|.++|...++++.+..+... ...+..+. ...++.++|.++.++-++
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5556666553 4588889999988887665333 33333333 233455666666555443
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=3.1e-12 Score=124.65 Aligned_cols=217 Identities=8% Similarity=-0.065 Sum_probs=152.7
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCC-CchhHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN-- 381 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 381 (686)
+...+...|++++|...|++..++ ++.++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~ 88 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQ 88 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCC
Confidence 333333333333333333333332 33455566666666 666666666666666654 45555566666666
Q ss_pred --cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHH
Q 005642 382 --ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDH----CGLVKE 455 (686)
Q Consensus 382 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 455 (686)
.+++++|...|+...+.+ +...+..+...|.. .+++++
T Consensus 89 ~~~~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACDLK------------------------------------YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT------------------------------------CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CcccCHHHHHHHHHHHHHcC------------------------------------CccHHHHHHHHHHcCCCcccCHHH
Confidence 666666666666555432 55666677777777 889999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 005642 456 GQKWFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKV 527 (686)
Q Consensus 456 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 527 (686)
|.++|++..+ .+ +...+..+...|.. .+++++|...|++.....+...+..+...+.. .+++++|+..
T Consensus 133 A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 133 AVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp HHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 9999998883 23 56677788888888 88999999999887322456778888888888 8999999999
Q ss_pred HHHHHccCCCCchhHHHHHHHHhh----cCCcchHHHHHHHHHhcCC
Q 005642 528 AERMIELDPENACAYIQLSSIFAT----SGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 528 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 570 (686)
++++.+..| +.++..++.+|.. .+++++|.+++++..+.+.
T Consensus 209 ~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 209 YSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 999998866 6678899999998 9999999999998887654
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.9e-12 Score=124.74 Aligned_cols=239 Identities=8% Similarity=-0.048 Sum_probs=161.3
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCC
Q 005642 239 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318 (686)
Q Consensus 239 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 318 (686)
++..+...+...|++++|...++.+.+.. .+..++..+..+|...|++++|...+++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~------------------- 65 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAV------------------- 65 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-------------------
Confidence 34444445555555555555555555544 444555555666666666666666555322
Q ss_pred HHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 005642 319 IEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 395 (686)
Q Consensus 319 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 395 (686)
++....... ....|..+...+...|++++|+..|+++.+. .|+. ..+.+.|++++|...++.+
T Consensus 66 -----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 66 -----EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp -----HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHH
T ss_pred -----HhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHH
Confidence 111111000 0356777777888888888888888887764 3442 2344556666666666655
Q ss_pred HHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH
Q 005642 396 TIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEH 475 (686)
Q Consensus 396 ~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 475 (686)
.+.. +.+...+..+...+...|++++|...++++.+. .+.+...
T Consensus 132 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~ 175 (258)
T 3uq3_A 132 AYVN----------------------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARG 175 (258)
T ss_dssp HHCC----------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHcC----------------------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHH
Confidence 5431 114456778888899999999999999998842 2236888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC------CCCchhHHHHHH
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELD------PENACAYIQLSS 547 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 547 (686)
+..++.++.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++.. |++..++..+..
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999999999999999999999987 3344 57889999999999999999999999999988 877666665554
Q ss_pred H
Q 005642 548 I 548 (686)
Q Consensus 548 ~ 548 (686)
+
T Consensus 256 ~ 256 (258)
T 3uq3_A 256 A 256 (258)
T ss_dssp T
T ss_pred h
Confidence 3
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=5.5e-13 Score=129.79 Aligned_cols=179 Identities=14% Similarity=-0.014 Sum_probs=98.7
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 416 (686)
|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++++++..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------- 138 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT----------------- 138 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-----------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-----------------
Confidence 4555555555555555555555555431 2233444455555555555555555554433221
Q ss_pred chhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC---hHHH
Q 005642 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC---LNEA 492 (686)
Q Consensus 417 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A 492 (686)
+.+...+..+...+...+++++|.+.|+++.+ ..| +...+..+..++...|+ +++|
T Consensus 139 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A 198 (272)
T 3u4t_A 139 -----------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLA 198 (272)
T ss_dssp -----------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTT
T ss_pred -----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHH
Confidence 11344555555233333477777777777763 234 45666667777776666 6666
Q ss_pred HHHHHhCC----CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 493 VNLIEQMP----FEAD------VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 493 ~~~~~~~~----~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
...+++.. ..|+ ...|..+...+...|++++|...++++++++|+++.++..+..+....+
T Consensus 199 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 66666551 1233 2456667777777788888888888888888877777766666554443
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.5e-12 Score=132.15 Aligned_cols=240 Identities=8% Similarity=0.047 Sum_probs=151.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCC-HHHHHHHHhhCCC---CCchhHHHHHHHHHhC
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGR-IEDAKHIFRTMPN---KSLISWNSMIVGLSQN 347 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 347 (686)
+..+...+.+.|++++|+..|+++. +.+..+|+.+..++...|+ +++|+..|+++.. .+...|..+..++...
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444333 1123334444444444443 4444444444432 3446677777777777
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHH
Q 005642 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNE 427 (686)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~ 427 (686)
|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++...
T Consensus 180 g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P--------------------------- 231 (382)
T 2h6f_A 180 RDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--------------------------- 231 (382)
T ss_dssp TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT---------------------------
T ss_pred cCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---------------------------
Confidence 77777777777777642 23455666666667777777777777766665531
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc-cCCHHHH-----HHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC--ChHHHHHHHHh
Q 005642 428 MRNTGVKPTIITFTAILSACDH-CGLVKEG-----QKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG--CLNEAVNLIEQ 498 (686)
Q Consensus 428 m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 498 (686)
-+...|+.+..++.. .|..++| ++.+++..+ +.| +...|..+..++.+.| ++++|++.+++
T Consensus 232 -------~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 232 -------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp -------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 155566666666666 4554555 477777763 456 5778888888888877 58888888887
Q ss_pred CCCCC-CHHHHHHHHHHHHhcC--------C-hhHHHHHHHHH-HccCCCCchhHHHHHHHHhhc
Q 005642 499 MPFEA-DVGMWSSILRGCVAHG--------D-KGLGRKVAERM-IELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 499 ~~~~p-~~~~~~~li~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 552 (686)
+...| +...+..++..+.+.| + .++|+.+++++ .+.+|.+...|..++..+...
T Consensus 302 ~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 302 LQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 75455 4667788888887764 2 58899999999 899999888888888776543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=6.2e-12 Score=120.73 Aligned_cols=200 Identities=7% Similarity=-0.043 Sum_probs=159.1
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 413 (686)
+..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4567778888888888888888888887752 3456677788888888888888888888776543
Q ss_pred HHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 005642 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 414 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 492 (686)
+.+...+..+...+...|++++|.++++++.+ .+..| +...+..++.++...|++++|
T Consensus 102 --------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 102 --------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 12556677777888888999999999988873 23445 567788888888899999999
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 493 VNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 493 ~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+.++++. ..| +...+..+...+...|++++|...++++++..|++...+..++.++...|++++|.++++++.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 161 KEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99888872 334 577788888889999999999999999999888888888888999999999999999998887754
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=1.3e-12 Score=122.23 Aligned_cols=189 Identities=15% Similarity=0.038 Sum_probs=123.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHH
Q 005642 137 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMIS 210 (686)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 210 (686)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...|++..+ .+...|..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45667777788888888888888888887764 3445666777777788888888887776543 34567777777
Q ss_pred HHHhc-----------CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 211 GYISN-----------NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 211 ~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
.+... |++++|+..|++.++.. +-+...+..+..++...|++++|...++++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 77888888887777642 2345666777777777788888887777777776 5667777777
Q ss_pred HHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHhh
Q 005642 280 DTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRT 328 (686)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 328 (686)
.+|...|++++|...|++.. +.+...+..+..++...|++++|...|++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777777777777654 22344555555555555555555555544
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=1.2e-11 Score=116.24 Aligned_cols=199 Identities=9% Similarity=-0.079 Sum_probs=153.5
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 413 (686)
+..|..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|...++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS-DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 456677777788888888888888877765 23346677777777778888888777777766543
Q ss_pred HHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHH
Q 005642 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC-GLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNE 491 (686)
Q Consensus 414 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 491 (686)
+.+..++..+...+... |++++|...++++.+ .+..| +...+..++.++...|++++
T Consensus 73 --------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 73 --------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp --------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 12556677778888888 899999999888873 22334 36778888888888999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC-CCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 492 AVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDP-ENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 492 A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
|...++++ ...| +...+..+...+...|++++|...++++++..| ++...+..++..+...|++++|..+++.+.+.
T Consensus 132 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 98888877 2334 477788888888899999999999999998888 88888888888888899999999888887764
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=1.8e-11 Score=119.11 Aligned_cols=227 Identities=11% Similarity=-0.003 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhHHHHHHHhcccCCchhHHHHHH
Q 005642 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDACKLFSELKVYDTILLNTMIT 311 (686)
Q Consensus 236 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~ 311 (686)
+..++..+...+...|++++|...+++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~--------------- 66 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYA--------------- 66 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH---------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHH---------------
Confidence 34444555555555556666666555555522 33444445555555 555555555554
Q ss_pred HHHhCCCHHHHHHHHhhCCC-CCchhHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c
Q 005642 312 VYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----I 382 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~ 382 (686)
+..+ .++.++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .
T Consensus 67 ----------------~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 67 ----------------KACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp ----------------HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred ----------------HHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc
Confidence 4332 256677777788888 888888888888888764 66777777777777 8
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHH
Q 005642 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDH----CGLVKEGQK 458 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~ 458 (686)
+++++|...+++..+.+ +...+..+...+.. .+++++|.+
T Consensus 128 ~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN------------------------------------DGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp CCHHHHHHHHHHHHHTT------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC------------------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888888887776654 33445555556665 788999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 005642 459 WFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRKVAER 530 (686)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 530 (686)
.|++..+. .+...+..+..+|.. .+++++|...|++.....+...+..+...+.. .+++++|...+++
T Consensus 172 ~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 172 SYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 99988732 256778888888888 89999999999887322336777888888888 8999999999999
Q ss_pred HHccCCCCc
Q 005642 531 MIELDPENA 539 (686)
Q Consensus 531 ~~~~~p~~~ 539 (686)
+.+..|+++
T Consensus 248 a~~~~~~~a 256 (273)
T 1ouv_A 248 GCKLGAKGA 256 (273)
T ss_dssp HHHHTCHHH
T ss_pred HHHcCCHHH
Confidence 999888653
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=2.7e-12 Score=133.33 Aligned_cols=274 Identities=12% Similarity=0.008 Sum_probs=184.7
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCC
Q 005642 242 SVLSACSSLGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 318 (686)
Q Consensus 242 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 318 (686)
.+...+...|++++|...++++++.+.... ..++..+...|...|++++|...|++.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------------------- 112 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD-------------------- 112 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------------------
Confidence 344455566666666666666666532211 135666777777777777777777632
Q ss_pred HHHHHHHHhhCCC--CCchhHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCC-------
Q 005642 319 IEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLRM-DKFSLASVISACANISS------- 384 (686)
Q Consensus 319 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~------- 384 (686)
.++.+.... .....+..+...|...|++++|...|++..+. +-.| ...++..+...+...|+
T Consensus 113 ----l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 113 ----LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP 188 (411)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ----HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccc
Confidence 222222221 12245666777777777777777777766543 1111 23466677777788888
Q ss_pred ----------hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 005642 385 ----------LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAILSACDHCGLV 453 (686)
Q Consensus 385 ----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~ 453 (686)
+++|...+.+..+ +.... +..+ ...++..+...+...|++
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~--------------------------~~~~~---~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLK--------------------------LMRDL---GDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHH--------------------------HHHHH---TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHH--------------------------HHHHc---CCHHHHHHHHHHHHHHHHHcCCh
Confidence 6666666654432 22222 1111 235677888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCC---CHHHHHHHHHHHHhcCCh
Q 005642 454 KEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMP-----FEA---DVGMWSSILRGCVAHGDK 521 (686)
Q Consensus 454 ~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p---~~~~~~~li~~~~~~g~~ 521 (686)
++|.+.+++..+...-.++ ...+..+..+|...|++++|...+++.. ... ....+..+...+...|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998642211112 3478899999999999999999998772 111 146688889999999999
Q ss_pred hHHHHHHHHHHccCCC------CchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 522 GLGRKVAERMIELDPE------NACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 522 ~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++|...++++++..+. ...++..++.+|...|++++|.+++++..+.
T Consensus 320 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999986443 2347889999999999999999999988764
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=4.3e-12 Score=121.02 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=138.7
Q ss_pred CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
....|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++.+.+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------- 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD------------- 87 (243)
T ss_dssp --------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------
Confidence 3456777777888888888888888888764 23456677777778888888888888887766543
Q ss_pred HHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005642 413 FYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 413 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (686)
+.+..++..+...+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|
T Consensus 88 ---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 88 ---------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred ---------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHH
Confidence 125566777777788888888888888887732 223677788888888888888888
Q ss_pred HHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 493 VNLIEQMP-F-EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 493 ~~~~~~~~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
...++++. . +.+...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 145 LPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888762 3 33577788888888888888888888888888888888888888888888888888888888887643
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=1.1e-11 Score=128.25 Aligned_cols=280 Identities=13% Similarity=0.025 Sum_probs=184.6
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHH
Q 005642 236 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 312 (686)
Q Consensus 236 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 312 (686)
....+......+...|++++|...++++.+.+.... ..++..+...|...|++++|...+++.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------- 73 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD-------------- 73 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--------------
Confidence 344444555556666666666666666666532211 245666777777777777777776632
Q ss_pred HHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC-
Q 005642 313 YSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMD----KFSLASVISACANISS- 384 (686)
Q Consensus 313 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~- 384 (686)
..+......+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 74 ----------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 74 ----------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 2222222211 124566666777777777777777776654210 011 3356666777777777
Q ss_pred -------------------hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 005642 385 -------------------LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAIL 444 (686)
Q Consensus 385 -------------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 444 (686)
+++|...+....+ ++... +..| ...++..+.
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~--------------------------~~~~~---~~~~~~~~~~~~la 194 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLS--------------------------LVTAL---GDRAAQGRAFGNLG 194 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHH--------------------------HHHHT---TCHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHH--------------------------HHHhc---cCcHHHHHHHHHHH
Confidence 6666666654432 22211 1111 234677888
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHH
Q 005642 445 SACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMP----FEAD----VGMWSSIL 512 (686)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~li 512 (686)
..+...|++++|...+++..+...-.++ ..++..++..|...|++++|...+++.. ..++ ..++..+.
T Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 8899999999999999988643221222 3478889999999999999999998762 1112 45678888
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCC------chhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPEN------ACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..+...|++++|...++++++..+.. ..++..++.+|...|++++|.+++++..+.
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999998865432 557889999999999999999999987764
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=1e-11 Score=120.65 Aligned_cols=224 Identities=9% Similarity=-0.027 Sum_probs=160.9
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccC
Q 005642 309 MITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD--KFSLASVISACANIS 383 (686)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~ 383 (686)
....+...|++++|...|+++.+ .+...+..+...+...|++++|+..|++..+.+..|+ ...+..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 33444444444444444444432 3445777788888888888888888888877432222 234677777788888
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005642 384 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAM 463 (686)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (686)
++++|...++.+.+.. +.+..++..+...+...|++++|.+.+++.
T Consensus 89 ~~~~A~~~~~~a~~~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD----------------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp CHHHHHHHHHHHHHHS----------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHhcC----------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888887776643 124567888888899999999999999988
Q ss_pred HHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccC--
Q 005642 464 KWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGD---KGLGRKVAERMIELD-- 535 (686)
Q Consensus 464 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-- 535 (686)
. ...| +...+..+...+...+++++|.+.|+++ ...| +...+..+...+...|+ .++|...++++++..
T Consensus 135 l---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 135 I---RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp C---CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred h---hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 7 3355 5777888883444456999999999887 3444 46777788888888888 888999999888865
Q ss_pred -CCC-----chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 536 -PEN-----ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 536 -p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
|+. ..+|..++.+|...|++++|.++++++.+..
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 432 2578889999999999999999999888743
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=2.2e-12 Score=133.58 Aligned_cols=302 Identities=13% Similarity=0.071 Sum_probs=205.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHccCChhhHHHHHHHHHHc----CCCc-hH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED----ASTLASVLSACSSLGFLEHGKQVHGHACKV----GVID-DV 272 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~ 272 (686)
...+......+...|++++|+..|++..+.+ +.+ ..++..+...+...|++++|...++++.+. +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4456667778888888999999888887752 223 246677777888889999988888876553 2122 24
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCC-
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGS- 349 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~- 349 (686)
.++..+...|...|++++|...+++.. ++......+ ...++..+...+...|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHL------------------------DISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 567778888888899999988887543 222211111 12345555566666666
Q ss_pred -------------------hhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchh
Q 005642 350 -------------------PIEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 405 (686)
Q Consensus 350 -------------------~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 405 (686)
+++|...+++.... +..| ...++..+...+...|++++|...+++..+..
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 217 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA------ 217 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH------
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH------
Confidence 66666666655431 1111 12456677777888888888888887665421
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHH
Q 005642 406 ISTSLVDFYCKCGYDALALFNEMRNTGVK-PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMV 480 (686)
Q Consensus 406 ~~~~li~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~ 480 (686)
.+ .+.. ....++..+...+...|++++|...+++..+...-.++ ..++..++
T Consensus 218 --------------------~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 218 --------------------KE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp --------------------HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------------Hh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 11 0100 01346778888899999999999999987632111111 56788899
Q ss_pred HHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccC------CCCchhHHHHH
Q 005642 481 DLFARAGCLNEAVNLIEQMP----FEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELD------PENACAYIQLS 546 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~ 546 (686)
..|...|++++|...+++.. ..++ ...+..+...+...|++++|...+++++++. |....++..++
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 354 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS 354 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 99999999999999998772 1122 5567888899999999999999999998853 22356778888
Q ss_pred HHHhhcCCcch
Q 005642 547 SIFATSGEWEK 557 (686)
Q Consensus 547 ~~~~~~g~~~~ 557 (686)
.++...|+...
T Consensus 355 ~~~~~~g~~~~ 365 (406)
T 3sf4_A 355 DLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHhhHhHH
Confidence 88888887754
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=2e-12 Score=123.27 Aligned_cols=211 Identities=12% Similarity=0.054 Sum_probs=150.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 005642 306 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 382 (686)
Q Consensus 306 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 382 (686)
|..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33344444444444444444444432 345677778888888888888888888887752 34567777888888888
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005642 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDA 462 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 462 (686)
|++++|.+.++.+.+.. +.+...+..+...+...|++++|..++++
T Consensus 105 ~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG----------------------------------MENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp TCHHHHHHHHHHHHHHT----------------------------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99998888888776643 22556777788888999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 463 MKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FE-ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 463 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
+.+. .+.+...+..++..+.+.|++++|...++++. .. .+...+..+...+...|++++|...++++++..|+++.
T Consensus 151 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 151 AVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 8842 22367889999999999999999999999873 33 35788999999999999999999999999999999988
Q ss_pred hHHHHHHHHhhcC
Q 005642 541 AYIQLSSIFATSG 553 (686)
Q Consensus 541 ~~~~l~~~~~~~g 553 (686)
++..+..+....|
T Consensus 229 ~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 229 ALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHTC------
T ss_pred HHHHHHHHHhhcc
Confidence 8777766554433
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=2.8e-12 Score=124.88 Aligned_cols=177 Identities=12% Similarity=-0.061 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHHHHcCC---CCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHH
Q 005642 119 AALEYGKQIHSHILVNGL---DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARR 192 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 192 (686)
++++.|...++.+++... +.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++|..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 566777777777776532 12456777788888888888888888887763 345566666677777777777777
Q ss_pred HHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 005642 193 VFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269 (686)
Q Consensus 193 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 269 (686)
.|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+....... +
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 175 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-D 175 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 7765543 34566777777777777777777777777663 3443333334444455566666666666655543 2
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 270 DDVIVASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 270 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
++...+ .++..+...++.++|...+.+..
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 176 KEQWGW-NIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp CCSTHH-HHHHHHTTSSCHHHHHHHHHHHC
T ss_pred cchHHH-HHHHHHHHhcCHHHHHHHHHHHh
Confidence 222222 24555555555566666655443
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=3.4e-12 Score=124.32 Aligned_cols=238 Identities=11% Similarity=-0.036 Sum_probs=149.6
Q ss_pred HhcCChhHHHHHHHhcccC-------CchhHHHHHHHHHhCCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhh
Q 005642 283 SKRGMPSDACKLFSELKVY-------DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIE 352 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 352 (686)
...|++++|...|+++... +..++..+...+...|++++|...|+++.+ .+..+|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 3456677777777765531 233455556666666666666666655432 234555556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCC
Q 005642 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG 432 (686)
Q Consensus 353 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~ 432 (686)
|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------------------------- 141 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------------------------------- 141 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------------------------
Confidence 666666655531 2234455555555555666665555555554432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-----HH
Q 005642 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD-----VG 506 (686)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~ 506 (686)
|+.......+..+...|++++|...+++.... .+++...+ .++..+...++.++|...+++.. ..|+ ..
T Consensus 142 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 142 --PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp --TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccH
Confidence 22222233333445668999999999887743 23344444 46777788888899999988873 3332 56
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHH
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIR 562 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (686)
.|..+...+...|++++|...++++++..|++.. ..+.++...|++++|.+.+
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 7888999999999999999999999999997744 3466778889999888765
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=9.1e-12 Score=126.41 Aligned_cols=225 Identities=10% Similarity=0.028 Sum_probs=148.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 005642 336 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS-LELGEQVFARVTIIGLDSDQIISTSLVDFY 414 (686)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 414 (686)
.|..+...+.+.|++++|+..|+++.+.. +-+...|..+..++...|+ +++|+..++++++.. +.+...|..+...|
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555555555555566665555555531 1223444555555555554 555555555555543 22344444444444
Q ss_pred Hhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHh-cCChH
Q 005642 415 CKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFAR-AGCLN 490 (686)
Q Consensus 415 ~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~ 490 (686)
...|+ +|+..|+++.+.... +...|..+..++.+.|++++|+..++++++ +.| +...|..+..++.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 44444 555555555544322 677888888888888999999999998883 355 67888888888888 56657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC--------
Q 005642 491 EA-----VNLIEQM-PFEA-DVGMWSSILRGCVAHG--DKGLGRKVAERMIELDPENACAYIQLSSIFATSG-------- 553 (686)
Q Consensus 491 ~A-----~~~~~~~-~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 553 (686)
+| ++.|++. ...| +...|..+...+...| ++++|+..++++ +..|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 3666665 3455 4677888888888777 688888888887 888888888888898888864
Q ss_pred -CcchHHHHHHHH-Hh
Q 005642 554 -EWEKSSLIRDIM-RE 567 (686)
Q Consensus 554 -~~~~a~~~~~~~-~~ 567 (686)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 257888888877 44
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=1.5e-11 Score=118.13 Aligned_cols=207 Identities=12% Similarity=-0.022 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChh
Q 005642 272 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351 (686)
Q Consensus 272 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 351 (686)
...+..+...+...|++++|...|+++.. ....+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~la~~~~~~~~~~ 88 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE----------------------------IDPSSADAHAALAVVFQTEMEPK 88 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH----------------------------HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------------------cCCChHHHHHHHHHHHHHcCCHH
Confidence 45566666667777777777766664321 01234556777777777888888
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHC
Q 005642 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNT 431 (686)
Q Consensus 352 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~ 431 (686)
+|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+
T Consensus 89 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------------------------------- 135 (252)
T 2ho1_A 89 LADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT-------------------------------- 135 (252)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT--------------------------------
T ss_pred HHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc--------------------------------
Confidence 8888888777652 3356667777777888888888877777665411
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 005642 432 GVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGM 507 (686)
Q Consensus 432 ~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 507 (686)
..| +...+..+...+...|++++|.+.++++.+. .| +...+..++.++...|++++|...++++ ...| +...
T Consensus 136 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 211 (252)
T 2ho1_A 136 -LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211 (252)
T ss_dssp -TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHH
T ss_pred -cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 122 4456777788888899999999999998742 34 5788889999999999999999999887 3334 5777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 543 (686)
+..+...+...|+.++|...++++.+..|+++....
T Consensus 212 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 212 LLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888999999999999999999999998766443
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=6.3e-12 Score=126.14 Aligned_cols=273 Identities=13% Similarity=0.025 Sum_probs=178.4
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCH
Q 005642 243 VLSACSSLGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 319 (686)
Q Consensus 243 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 319 (686)
....+...|++++|...++++.+...... ...+..+...|...|++++|...+++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------- 70 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-------------------- 70 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 34445556666666666666655432211 2455666677777777777777666332
Q ss_pred HHHHHHHhhCCCC--CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------
Q 005642 320 EDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMD----KFSLASVISACANISS-------- 384 (686)
Q Consensus 320 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~-------- 384 (686)
++......+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 71 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (338)
T 3ro2_A 71 ----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146 (338)
T ss_dssp ----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC
T ss_pred ----HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhh
Confidence 121111111 123556666677777777777777766554210 111 2356666677777777
Q ss_pred ------------hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 005642 385 ------------LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAILSACDHCG 451 (686)
Q Consensus 385 ------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g 451 (686)
+++|...+....+ +.... +..| ...++..+...+...|
T Consensus 147 ~~~~~~~~a~~~~~~A~~~~~~a~~--------------------------~~~~~---~~~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 147 DTGEFPEDVRNALQAAVDLYEENLS--------------------------LVTAL---GDRAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHH--------------------------HHHHH---TCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH--------------------------HHHhc---CCHHHHHHHHHHHHHHHHHhC
Confidence 6666666654432 22221 1111 2346777888889999
Q ss_pred CHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcC
Q 005642 452 LVKEGQKWFDAMKWQYHIDP----EIEHYSCMVDLFARAGCLNEAVNLIEQMP----FEAD----VGMWSSILRGCVAHG 519 (686)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~li~~~~~~g 519 (686)
++++|.+.+++..+...-.+ ...++..++..+...|++++|...+++.. ..++ ...+..+...+...|
T Consensus 198 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 99999999998763211111 23478889999999999999999998762 1112 456788888999999
Q ss_pred ChhHHHHHHHHHHccCCCC------chhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 520 DKGLGRKVAERMIELDPEN------ACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++++|...++++++..|.. ..++..++.+|...|++++|..++++..+.
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999998865432 347888999999999999999999988864
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.39 E-value=2.4e-11 Score=114.09 Aligned_cols=211 Identities=9% Similarity=-0.082 Sum_probs=152.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCCh
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 350 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 350 (686)
+...+..+...+...|++++|...|+++.. ....+...|..+...+...|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~ 58 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK----------------------------SDPKNELAWLVRAEIYQYLKVN 58 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HCTTCHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----------------------------hCccchHHHHHHHHHHHHcCCh
Confidence 445566666666666666666666664321 1112455677777777888888
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHH
Q 005642 351 IEALDLFCNMNKLDLRMDKFSLASVISACANI-SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMR 429 (686)
Q Consensus 351 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~ 429 (686)
++|...|+++.+.. +.+..++..+...+... |++++|...++.+.+.+..
T Consensus 59 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------------------- 109 (225)
T 2vq2_A 59 DKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY---------------------------- 109 (225)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC----------------------------
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC----------------------------
Confidence 88888888777652 33566777777788888 8888888887776651111
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC--CCH
Q 005642 430 NTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FE--ADV 505 (686)
Q Consensus 430 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--p~~ 505 (686)
+.+...+..+...+...|++++|...++++.+. .| +...+..++.++.+.|++++|...++++. .. .+.
T Consensus 110 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 182 (225)
T 2vq2_A 110 ----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182 (225)
T ss_dssp ----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred ----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 113466777788888899999999999988742 34 57888889999999999999999998872 33 356
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
..+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 183 DDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 6777777788899999999999999998999887655433
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=3e-11 Score=109.68 Aligned_cols=166 Identities=10% Similarity=0.055 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
+...|..+...+...|++++|.+.|+++++.. +-+..++..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~la~~~ 49 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----------------------------------PNNVETLLKLGKTY 49 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHH
Confidence 34556666666666666666666666665542 11567788888888
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~ 525 (686)
.+.|++++|...+...... .+.+...+..+...+...++++.|...+++.. ..| +...+..+...+...|++++|+
T Consensus 50 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 127 (184)
T 3vtx_A 50 MDIGLPNDAIESLKKFVVL--DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI 127 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHH
Confidence 8999999999999988732 22357778888888999999999999988873 344 5778888999999999999999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..++++++.+|+++.+|..++.+|.+.|++++|.+.+++..+..
T Consensus 128 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 128 EAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999887643
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=6e-11 Score=121.79 Aligned_cols=302 Identities=10% Similarity=-0.038 Sum_probs=192.4
Q ss_pred HhcCChhHHHHHHHHHHHC--CCCcCHH--HHHHHHHHH--HccCChhhHH-----------HHHHHHHHcCCCchH---
Q 005642 213 ISNNEDTEALLLFHKMRRN--GVLEDAS--TLASVLSAC--SSLGFLEHGK-----------QVHGHACKVGVIDDV--- 272 (686)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~--g~~p~~~--~~~~ll~~~--~~~~~~~~a~-----------~~~~~~~~~g~~~~~--- 272 (686)
.+.+++++|..+++++.+. .+..|.. .|..++..- .-.++++.+. +.++.+.....+.+.
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 4577888888888777553 2323332 333333221 1222333333 555554432111110
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCC
Q 005642 273 -IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGS 349 (686)
Q Consensus 273 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~ 349 (686)
..+......+...|++++|...|++.. +++.....+ ...++..+...|...|+
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~a~~~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAE------------------------SKLIFVKDRIEKAEFFFKMSESYYYMKQ 158 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------TTGGGCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH------------------------HHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 112224555666677777777666332 222222211 22567778888888888
Q ss_pred hhhHHHHHHHHHHCCCC-C-----CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHH
Q 005642 350 PIEALDLFCNMNKLDLR-M-----DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALA 423 (686)
Q Consensus 350 ~~~A~~~~~~m~~~g~~-p-----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~ 423 (686)
+++|+..+++..+.-.. + ...++..+...+...|++++|...+..+.+.
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------- 213 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM------------------------- 213 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------------------------
Confidence 88888888877643111 1 1346778888899999999999999876542
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHh---cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005642 424 LFNEMRNTGVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQ---YHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQ 498 (686)
Q Consensus 424 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (686)
..+. +..+ ...++..+...|...|++++|.+.+++..+. .+..| ...++..++.++.+.|++++|...+++
T Consensus 214 -~~~~---~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 214 -AEAE---KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp -HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHc---CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1111 1111 2246778888999999999999999998731 12323 467889999999999999999999988
Q ss_pred CC------CCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 499 MP------FEAD-VGMWSSILRGCVAHGD---KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 499 ~~------~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.. ..|. ...+..+...+...|+ .++|+..+++. ...|.....+..++.+|...|++++|..++++..+.
T Consensus 290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 72 1222 2335667777888888 77788877776 334445567889999999999999999999988764
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=7.7e-11 Score=118.12 Aligned_cols=280 Identities=13% Similarity=0.079 Sum_probs=187.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHccCChhhHHHHHHHHHHc----CCCc-hHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED----ASTLASVLSACSSLGFLEHGKQVHGHACKV----GVID-DVIV 274 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~ 274 (686)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +..+ ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667778888888888888887752 222 356667777888888888888888876553 2122 3456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCC---
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGS--- 349 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~--- 349 (686)
+..+...|...|++++|...+++.. ++......+ ...++..+...+...|+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 141 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHL------------------------DISRELNDKVGEARALYNLGNVYHAKGKSFG 141 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH------------------------HHHHHhcCchHHHHHHHHHHHHHHHcCcccc
Confidence 7788888888999999988887532 222222111 12345556666666666
Q ss_pred -----------------hhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHH
Q 005642 350 -----------------PIEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 407 (686)
Q Consensus 350 -----------------~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 407 (686)
+++|...+++.... +..| ...++..+...+...|++++|...++.+.+..
T Consensus 142 ~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------- 213 (338)
T 3ro2_A 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-------- 213 (338)
T ss_dssp SSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------
Confidence 66666666655431 1111 12356677777888888888888888665421
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHH
Q 005642 408 TSLVDFYCKCGYDALALFNEMRNTGV-KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDL 482 (686)
Q Consensus 408 ~~li~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~ 482 (686)
... +. .....++..+...+...|++++|.+.+++..+...-.++ ..++..+...
T Consensus 214 ------------------~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 214 ------------------KEF---GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp ------------------HHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------Hhc---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 111 10 012346777888889999999999999987632111112 5678889999
Q ss_pred HHhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 483 FARAGCLNEAVNLIEQMP-F---EAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
+...|++++|...+++.. . .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999998872 1 111 446778889999999999999999999987664
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=7.1e-11 Score=122.52 Aligned_cols=280 Identities=12% Similarity=0.052 Sum_probs=189.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHccCChhhHHHHHHHHHHc----C-CCchHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA----STLASVLSACSSLGFLEHGKQVHGHACKV----G-VIDDVIV 274 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~ 274 (686)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++.++. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456667778888888888888887752 2222 35667777777888888888888777653 1 1224456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhCCC---
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGS--- 349 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~--- 349 (686)
+..+...|...|++++|...|++.. +++..... ....++..+...|...|+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHL------------------------TLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH------------------------HHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence 7788888888999999888887542 22222211 112355666666666666
Q ss_pred --------------hhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHH
Q 005642 350 --------------PIEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 410 (686)
Q Consensus 350 --------------~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (686)
+++|+..+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------- 253 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA----------- 253 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-----------
Confidence 66676666665432 1111 22466677777888888888888888665421
Q ss_pred HHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHhc
Q 005642 411 VDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP----EIEHYSCMVDLFARA 486 (686)
Q Consensus 411 i~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~ 486 (686)
.... .......++..+...+...|++++|.+.+++......-.. ...++..+..++...
T Consensus 254 ---------------~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (411)
T 4a1s_A 254 ---------------REFG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL 316 (411)
T ss_dssp ---------------HHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---------------HhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 1100 0000124677888889999999999999998764221111 256788899999999
Q ss_pred CChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 487 GCLNEAVNLIEQMP-F---EAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 487 g~~~~A~~~~~~~~-~---~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
|++++|...+++.. . .++ ...+..+...+...|++++|...+++++++.+
T Consensus 317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 99999999998872 1 111 44678888999999999999999999999776
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=2e-11 Score=128.69 Aligned_cols=207 Identities=8% Similarity=-0.042 Sum_probs=158.8
Q ss_pred HHHHHHHHhhCCC---CCchhHHHHHHHHHhCCCh-hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 005642 319 IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSP-IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 394 (686)
Q Consensus 319 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 394 (686)
++++...++.... .+...|..+...+...|++ ++|+..|++..+.. +-+...+..+..++...|++++|...|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555554432 2445666666667777777 77777777766542 22355666666666666666666666665
Q ss_pred HHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHH
Q 005642 395 VTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHC---------GLVKEGQKWFDAMKW 465 (686)
Q Consensus 395 ~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~ 465 (686)
+++. .|+...+..+...+... |++++|++.+++..+
T Consensus 163 al~~-----------------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 207 (474)
T 4abn_A 163 ALTH-----------------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207 (474)
T ss_dssp HHTT-----------------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh-----------------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 5533 35567777788888888 999999999999884
Q ss_pred hcCCCC-ChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005642 466 QYHIDP-EIEHYSCMVDLFARA--------GCLNEAVNLIEQM-PFEA----DVGMWSSILRGCVAHGDKGLGRKVAERM 531 (686)
Q Consensus 466 ~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~ 531 (686)
+.| +...|..+..+|... |++++|.+.|++. ...| +...|..+...+...|++++|+..++++
T Consensus 208 ---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 208 ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345 688999999999998 9999999999988 3455 6888999999999999999999999999
Q ss_pred HccCCCCchhHHHHHHHHhhcCCcchHHHHHHH
Q 005642 532 IELDPENACAYIQLSSIFATSGEWEKSSLIRDI 564 (686)
Q Consensus 532 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (686)
++++|+++.++..++.++...|++++|.+.+++
T Consensus 285 l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 285 AALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999975543
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=3.1e-08 Score=107.34 Aligned_cols=214 Identities=10% Similarity=-0.031 Sum_probs=114.0
Q ss_pred HHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 322 AKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEAL-DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 322 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
...+|+++.. .++..|-..+..+.+.|+.++|. .+|++.... ++.+...+...+....+.|+++.|.++|+.+++
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344554433 24556666666667777777775 777777754 334444455566666777788888888877665
Q ss_pred hCC---------Cc------------chhHHHHHHHHHHhchh--HHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCC
Q 005642 398 IGL---------DS------------DQIISTSLVDFYCKCGY--DALALFNEMRNT-GVKPTIITFTAILSACDH-CGL 452 (686)
Q Consensus 398 ~~~---------~~------------~~~~~~~li~~~~~~~~--~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~-~g~ 452 (686)
... .| ...+|...+....+.|. .|..+|.+..+. +.. ....|...+..-.+ .++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCC
Confidence 310 01 12244444444444443 555666665544 111 11222221111112 233
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHH
Q 005642 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA----DVGMWSSILRGCVAHGDKGLGRKV 527 (686)
Q Consensus 453 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~li~~~~~~g~~~~A~~~ 527 (686)
.+.|..+|+...+. .+.+...+...++.....|+.+.|..+|++.. ..| ....|...+.--...|+.+.+..+
T Consensus 486 ~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666533 22244445555555556666666666666552 222 134455555555566666666666
Q ss_pred HHHHHccCCCCc
Q 005642 528 AERMIELDPENA 539 (686)
Q Consensus 528 ~~~~~~~~p~~~ 539 (686)
.+++.+..|+++
T Consensus 564 ~~R~~~~~P~~~ 575 (679)
T 4e6h_A 564 EKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHSTTCC
T ss_pred HHHHHHhCCCCc
Confidence 666666666543
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=9.4e-11 Score=120.36 Aligned_cols=155 Identities=11% Similarity=-0.030 Sum_probs=100.3
Q ss_pred HHHHHHHhcCChHHHHHHHhccCC-----CC----hhhHHHHHHHHHccCCHHHHHHHHhhcCC-----CC-----hhhH
Q 005642 145 SLVNLYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTD-----TS-----SVMW 205 (686)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~ 205 (686)
.....+...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+ ++ ..++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 355667778888888888877753 22 23566667777777777777777765432 11 3467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHc----CC-CchHHHH
Q 005642 206 NSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GV-IDDVIVA 275 (686)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~ 275 (686)
+.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 77777777777777777777776542 1111 1235666667777777777777777776662 22 3345566
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcc
Q 005642 276 SALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
..+...|.+.|++++|...+++..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777776543
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=2.1e-10 Score=104.05 Aligned_cols=169 Identities=11% Similarity=0.059 Sum_probs=137.5
Q ss_pred CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
++..|..+...|.+.|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+..+.....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~------------ 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT------------ 70 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------------
Confidence 45678888888888899999999988888752 33566777888888888998888888887765431
Q ss_pred HHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHH
Q 005642 413 FYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNE 491 (686)
Q Consensus 413 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 491 (686)
.+...+..+...+...++++.|.+.+.+..+ ..| +...+..++.+|.+.|++++
T Consensus 71 ----------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 71 ----------------------TSAEAYYILGSANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchh
Confidence 2455666777788888999999999999873 344 67889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 492 AVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 492 A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++
T Consensus 126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 126 AIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 99999987 3445 578899999999999999999999999999999654
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=1.1e-10 Score=128.21 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005642 369 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACD 448 (686)
Q Consensus 369 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 448 (686)
..+++.+...+.+.|++++|++.|+++++.. | -+..++..+..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P--------------------------------~~~~a~~nLg~~l~ 54 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--P--------------------------------EFAAAHSNLASVLQ 54 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S--------------------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C--------------------------------CCHHHHHHHHHHHH
Confidence 3456666666667777777666666665542 1 15678888899999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~ 525 (686)
+.|++++|++.|++..+ +.| +...|..++.+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+
T Consensus 55 ~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi 131 (723)
T 4gyw_A 55 QQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131 (723)
T ss_dssp HTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999883 456 5889999999999999999999999987 4556 5788999999999999999999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 526 KVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..++++++++|+++.++..++.+|...|+|++|.+.++++.+.
T Consensus 132 ~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 132 ASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888753
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=1e-10 Score=115.89 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=164.0
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC-
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKL-------DLRMDKFSLASVISACANISSLELGEQVFARVTII------GL- 400 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 400 (686)
.++..+...+...|++++|...|+++.+. ..+.....+..+...+...|++++|...++.+++. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56788888899999999999999888763 22334566778888999999999999999988764 22
Q ss_pred CcchhHHHHHHHHHHhchh--HHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc----
Q 005642 401 DSDQIISTSLVDFYCKCGY--DALALFNEMRNT------GVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQY---- 467 (686)
Q Consensus 401 ~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---- 467 (686)
+.....+..+...|...|+ +|...+++..+. +..| ...++..+...+...|++++|.++++++.+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2345577788888888887 888888887754 2223 33567778888889999999999999887421
Q ss_pred -CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCC-------HHHHHHHHHHHHhcCChhHHHHHH
Q 005642 468 -HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP----------FEAD-------VGMWSSILRGCVAHGDKGLGRKVA 528 (686)
Q Consensus 468 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-------~~~~~~li~~~~~~g~~~~A~~~~ 528 (686)
+..| ...++..+..+|...|++++|.+.++++. ..+. ...+......+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1133 35678888889999999999998887762 1111 122333334445566777777788
Q ss_pred HHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 529 ERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 529 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
++.....|..+.++..++.+|...|++++|.+++++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888888888899999999999999999999999988764
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=1.4e-08 Score=109.97 Aligned_cols=422 Identities=9% Similarity=0.008 Sum_probs=279.0
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCC---HHHHHHHHhhcCC--
Q 005642 128 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGK---MNDARRVFDRTTD-- 199 (686)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~-- 199 (686)
++..+... +-|...|..++..+.+.+.++.+..+|+++.. .....|...+..-.+.++ ++.+..+|++...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 34444444 45899999999999999999999999999885 345567788888888888 9999999998654
Q ss_pred ---CChhhHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CcC-HHHHHHHHHHHHc---------cCChhhH
Q 005642 200 ---TSSVMWNSMISGYISNNED--------TEALLLFHKMRR-NGV-LED-ASTLASVLSACSS---------LGFLEHG 256 (686)
Q Consensus 200 ---~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~~~~~~a 256 (686)
+++..|...+.-..+.++. +...++|+..+. -|. .|+ ...|...+..... .++++.+
T Consensus 134 ~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 134 LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYI 213 (679)
T ss_dssp SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHH
Confidence 6677888877766665543 234467777654 455 554 4566666655432 3356778
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhh-------C
Q 005642 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT-------M 329 (686)
Q Consensus 257 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~ 329 (686)
..+|+.++......-..+|......-...+ ...+.+++.+.. .+++.|...+.+ +
T Consensus 214 R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~~-----------------~~y~~Ar~~~~e~~~~~~~l 275 (679)
T 4e6h_A 214 RKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGELS-----------------AQYMNARSLYQDWLNITKGL 275 (679)
T ss_dssp HHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHHH-----------------HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHHhH
Confidence 888888886432223344433322211111 111222222111 011112222211 1
Q ss_pred CC--------------C--C------chhHHHHHHHHHhCCC-------hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005642 330 PN--------------K--S------LISWNSMIVGLSQNGS-------PIEALDLFCNMNKLDLRMDKFSLASVISACA 380 (686)
Q Consensus 330 ~~--------------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 380 (686)
.. | + ...|...+.---..+. .+.+..+|++.... .+-....|...+.-+.
T Consensus 276 ~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~ 354 (679)
T 4e6h_A 276 KRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQG 354 (679)
T ss_dssp CCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred hhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 10 0 1 1235444443333221 23355678888765 4556777888888888
Q ss_pred ccCChHHHH-HHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCC---------CCC------------
Q 005642 381 NISSLELGE-QVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGV---------KPT------------ 436 (686)
Q Consensus 381 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~---------~p~------------ 436 (686)
..|+.+.|. ++|+..+.. ++.+...|...+....+.|+ .|..+|+++.+... .|+
T Consensus 355 ~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 889999996 999999875 35667778888888888887 88888888875310 131
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-C-CCCCHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG-CLNEAVNLIEQM-P-FEADVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~-~~p~~~~~~~li~ 513 (686)
...|...+....+.|+.+.|..+|..+.+... .+....|...+..-.+.| +++.|..+|+.. . .+.+...|...+.
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 24688888888889999999999999984311 123455554444444544 599999999987 2 3336777888888
Q ss_pred HHHhcCChhHHHHHHHHHHccCCC---CchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCC
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPE---NACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (686)
.....|+.+.|..+|++++...|+ ....|..++..-.+.|+.+.+.++.+++.+.-++
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 888999999999999999998773 4567888888888899999999999999986543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=6.3e-11 Score=117.47 Aligned_cols=249 Identities=14% Similarity=0.063 Sum_probs=148.1
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHc-------CCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHH
Q 005642 239 TLASVLSACSSLGFLEHGKQVHGHACKV-------GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 311 (686)
Q Consensus 239 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 311 (686)
++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++.
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------- 95 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA------------- 95 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------
Confidence 3333444444444444444444444432 22334556777888888888888888888743
Q ss_pred HHHhCCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCC-CHHHHHHHHHHHH
Q 005642 312 VYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL------DLRM-DKFSLASVISACA 380 (686)
Q Consensus 312 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~ 380 (686)
.+++..... ....++..+...+...|++++|...|+++.+. +..| ....+..+...+.
T Consensus 96 -----------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 96 -----------LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp -----------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 333333211 12356777788888888888888888877654 2222 3455677888888
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005642 381 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460 (686)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 460 (686)
..|++++|...++.+.+. +.+......+....++..+...+...|++++|.+++
T Consensus 165 ~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 218 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEI--------------------------YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218 (311)
T ss_dssp TTTCHHHHHHHHHHHHHH--------------------------HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH--------------------------HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888876543 111100001112356778888899999999999999
Q ss_pred HHHHHhc------CCCCC-h------hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHH
Q 005642 461 DAMKWQY------HIDPE-I------EHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 461 ~~~~~~~------~~~p~-~------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~ 525 (686)
+++.+.. ...+. . ..+..+...+...+.+.+|...++... ..| ...++..+...+...|++++|.
T Consensus 219 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 298 (311)
T 3nf1_A 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE 298 (311)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Confidence 9887421 12221 1 222333334445556666666666663 334 4567889999999999999999
Q ss_pred HHHHHHHccCCC
Q 005642 526 KVAERMIELDPE 537 (686)
Q Consensus 526 ~~~~~~~~~~p~ 537 (686)
..+++++++.|+
T Consensus 299 ~~~~~al~l~~~ 310 (311)
T 3nf1_A 299 TLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhc
Confidence 999999988774
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=6.4e-09 Score=106.14 Aligned_cols=268 Identities=12% Similarity=0.033 Sum_probs=164.6
Q ss_pred HccCChhhHHHHHHHHHHcCCCchH----HHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHH
Q 005642 248 SSLGFLEHGKQVHGHACKVGVIDDV----IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 323 (686)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 323 (686)
...|+++.|...+++.+......+. ..+..+...+...|++++|...+++. .
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------l 80 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT------------------------E 80 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------------H
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHH------------------------H
Confidence 3445555555555555443211111 13445556666677777777766632 2
Q ss_pred HHHhhCCCC--CchhHHHHHHHHHhCCChhhHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHccCChHHHHHHHHH
Q 005642 324 HIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLR--MD-KFSLASVISACANISSLELGEQVFAR 394 (686)
Q Consensus 324 ~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 394 (686)
.+......+ ...++..+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 222221111 0123455666777778888887777776542 221 22 23455667777888888888888887
Q ss_pred HHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh
Q 005642 395 VTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE 474 (686)
Q Consensus 395 ~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 474 (686)
..+..... +......++..+...+...|++++|...+++............
T Consensus 161 al~~~~~~-----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 211 (373)
T 1hz4_A 161 GIEVLSSY-----------------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211 (373)
T ss_dssp HHHHTTTS-----------------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHhhcc-----------------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcch
Confidence 76543211 1111234566777778888999999999988763312111111
Q ss_pred HHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------
Q 005642 475 HYS-----CMVDLFARAGCLNEAVNLIEQMP-FEAD-----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPE------ 537 (686)
Q Consensus 475 ~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------ 537 (686)
.+. ..+..+...|++++|...+++.. ..|. ...+..+...+...|++++|...++++.+..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 291 (373)
T 1hz4_A 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh
Confidence 111 23345778899999999998873 2221 234667778888999999999999988775332
Q ss_pred CchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 538 NACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
....+..++.++...|++++|...+++..+.
T Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 292 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1135677888899999999999998887754
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=3.2e-09 Score=105.10 Aligned_cols=212 Identities=10% Similarity=0.027 Sum_probs=129.8
Q ss_pred HHHHHHHhhCCC---CCchhHHHHHHHHHh-------CCCh-------hhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 005642 320 EDAKHIFRTMPN---KSLISWNSMIVGLSQ-------NGSP-------IEALDLFCNMNKLDLRM-DKFSLASVISACAN 381 (686)
Q Consensus 320 ~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 381 (686)
++|...|++... .++..|..++..+.. .|++ ++|..+|++..+. +.| +...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 455555555543 234455555555432 3554 5566666555542 123 23345555555555
Q ss_pred cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHHHHHH
Q 005642 382 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP-TII-TFTAILSACDHCGLVKEGQKW 459 (686)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~-~~~~ll~~~~~~g~~~~A~~~ 459 (686)
.|++++|..+|+++++. .| +.. .|..++..+.+.|++++|..+
T Consensus 112 ~~~~~~A~~~~~~al~~-----------------------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI-----------------------------------EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp TTCHHHHHHHHHHHHTS-----------------------------------SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc-----------------------------------cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 55555555555555432 22 222 677777777777888888888
Q ss_pred HHHHHHhcCCCC-ChhHHHHHHHHHH-hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 005642 460 FDAMKWQYHIDP-EIEHYSCMVDLFA-RAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIEL- 534 (686)
Q Consensus 460 ~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 534 (686)
|++..+ ..| +...|...+.... ..|++++|..+|++. ...| +...|..++..+.+.|++++|..+++++++.
T Consensus 157 ~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 157 FKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 888772 223 4455544433322 258888888888776 2223 5677777788888888888888888888874
Q ss_pred --CCC-CchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 535 --DPE-NACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 535 --~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
.|+ ....|..++..+.+.|++++|..+++++.+..+
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 443 556777778888888888888888887776543
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=9.2e-10 Score=103.69 Aligned_cols=205 Identities=9% Similarity=0.020 Sum_probs=108.9
Q ss_pred CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 333 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...++..++.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3455556666666666666666666666655332455555556666666666666666666655543 123333333444
Q ss_pred HHHhchh--HHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHH
Q 005642 413 FYCKCGY--DALALFNEMRNTGVKPTI-------ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE---IEHYSCMV 480 (686)
Q Consensus 413 ~~~~~~~--~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~ 480 (686)
.|...|+ +|+..+++..+.... +. ..|..+...+...|++++|++.|++.. ...|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 4444433 444444444332211 23 345555566666677777777776665 23443 45555666
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 481 DLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
.+|...|+. .++++. ...+...+.... ....+.+++|+..+++++++.|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666544432 122221 111233333222 23345567888888888888888777666665543
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=3.7e-09 Score=104.68 Aligned_cols=231 Identities=10% Similarity=0.005 Sum_probs=178.7
Q ss_pred hHHHHHHHHHHHHhc----CCh----hHHHHHHHhcc---cCCchhHHHHHHHHH-------hCCCH-------HHHHHH
Q 005642 271 DVIVASALLDTYSKR----GMP----SDACKLFSELK---VYDTILLNTMITVYS-------SCGRI-------EDAKHI 325 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~---~~~~~~~~~li~~~~-------~~g~~-------~~A~~~ 325 (686)
+...|...+..-.+. ++. ++|..+|++.. +.++..|..++..+. +.|++ ++|..+
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 445677777765554 233 67888898877 456778888888776 45886 899999
Q ss_pred HhhCCC---C-CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 005642 326 FRTMPN---K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-F-SLASVISACANISSLELGEQVFARVTIIG 399 (686)
Q Consensus 326 ~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 399 (686)
|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. . .|..+...+.+.|++++|..+|+.+++..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 998765 3 4468999999999999999999999999984 5543 2 78888888889999999999998887643
Q ss_pred CCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHH
Q 005642 400 LDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSA-CDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYS 477 (686)
Q Consensus 400 ~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~ 477 (686)
. ++...|...... +...|++++|..+|++..+. .| +...|.
T Consensus 165 p----------------------------------~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 207 (308)
T 2ond_A 165 R----------------------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVL 207 (308)
T ss_dssp T----------------------------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHH
T ss_pred C----------------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHH
Confidence 1 122233333222 22369999999999998843 34 688899
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 478 CMVDLFARAGCLNEAVNLIEQMP----FEA--DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.++..+.+.|++++|..+|++.. ..| ....|..++......|+.+.|..+++++++..|++..
T Consensus 208 ~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 99999999999999999999872 355 3667899999999999999999999999999997653
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=8.1e-09 Score=105.59 Aligned_cols=203 Identities=9% Similarity=-0.030 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCC-----CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-----RM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (686)
.++..+...|...|++++|+..+++..+... .+ ...++..+..++...|++++|...+....+.
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~---------- 211 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL---------- 211 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------
Confidence 3566666677777777777777666553210 11 1345566666777777777777777755432
Q ss_pred HHHHHHHhchhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCChhHHHHHHHHHH
Q 005642 409 SLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQY---HIDPEIEHYSCMVDLFA 484 (686)
Q Consensus 409 ~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~~~~~~~l~~~~~ 484 (686)
.++. +..+ ...++..+...+...|++++|.+.+++..+.. +.+....++..++.++.
T Consensus 212 ----------------~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 212 ----------------AMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp ----------------HHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ----------------HHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 1110 1011 12456666677777777777777777765311 21223566777777777
Q ss_pred hcCChHHHHHHHHhCC------CCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 485 RAGCLNEAVNLIEQMP------FEAD-VGMWSSILRGCVAHGD---KGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 485 ~~g~~~~A~~~~~~~~------~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
+.|++++|...+++.. ..|. ...+..+...+...++ +++|+..+++.. ..|.....+..++.+|...|+
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCC
Confidence 7777777777777651 1222 2334444455556666 666666666522 233344566778888888888
Q ss_pred cchHHHHHHHHHh
Q 005642 555 WEKSSLIRDIMRE 567 (686)
Q Consensus 555 ~~~a~~~~~~~~~ 567 (686)
+++|..++++..+
T Consensus 352 ~~~A~~~~~~al~ 364 (378)
T 3q15_A 352 FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777764
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=1.9e-09 Score=110.28 Aligned_cols=236 Identities=10% Similarity=-0.018 Sum_probs=141.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-Cc----CHHHHHHHHHHHHccCChhhHHHHHHHHHHcC-----CCc-hHHHH
Q 005642 207 SMISGYISNNEDTEALLLFHKMRRNGV-LE----DASTLASVLSACSSLGFLEHGKQVHGHACKVG-----VID-DVIVA 275 (686)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~-~~~~~ 275 (686)
.....+...|++++|+..|++..+.-. .+ ...++..+...+...|+++.|...+.+..+.. ..+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888887765310 12 23356666667777777777777777665531 011 23456
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCChhhH
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEA 353 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 353 (686)
+.+..+|...|++++|...|++ |.++......+ ...++..+...|...|++++|
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~------------------------al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEA------------------------ALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH------------------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 6677777777777777776663 33333333222 124677788888888888888
Q ss_pred HHHHHHHHHC----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHH
Q 005642 354 LDLFCNMNKL----DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMR 429 (686)
Q Consensus 354 ~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~ 429 (686)
+..|++..+. +.+....++..+...+.+.|++++|...+++..+.....+
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------- 295 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS-------------------------- 295 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC--------------------------
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--------------------------
Confidence 8888887761 2222356777888888888898888888887766432111
Q ss_pred HCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 430 NTGVKPTIITFTAILSACDHCGL---VKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 430 ~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
.+.....+..+...+...++ +++|+.++++. +..| ....+..+...|...|++++|...|++.
T Consensus 296 ---~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 296 ---HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp ---CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11112234444445555666 55566555542 1222 2344555666666666666666666543
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=5.7e-10 Score=100.89 Aligned_cols=132 Identities=10% Similarity=0.021 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILR 513 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~ 513 (686)
+..++..+...+...|++++|.++++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 118 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV 118 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence 5677888888899999999999999998843 22367889999999999999999999999873 3346788889999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+...|++++|...++++++..|+++.++..++.++...|++++|.++++++.+..
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999888754
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=4.5e-08 Score=99.79 Aligned_cols=278 Identities=10% Similarity=-0.048 Sum_probs=182.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHH----HHHHHHHHHHccCChhhHHHHHHHHHHcCC---Cc--hHHHH
Q 005642 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS----TLASVLSACSSLGFLEHGKQVHGHACKVGV---ID--DVIVA 275 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~ 275 (686)
+......+...|++++|...+++.....-..+.. ++..+...+...|+++.|...+++..+... .+ ...++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556677889999999998887753222222 445556677788999999988888766321 11 12345
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC----CchhHHHHHHHHHhCCChh
Q 005642 276 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLISWNSMIVGLSQNGSPI 351 (686)
Q Consensus 276 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 351 (686)
..+...+...|++++|...+++ +.+.......+ ....+..+...+...|+++
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEK------------------------AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH------------------------HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 6677888889999999888873 33444443332 1235566777888889999
Q ss_pred hHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHH
Q 005642 352 EALDLFCNMNKLDLR--M--DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNE 427 (686)
Q Consensus 352 ~A~~~~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~ 427 (686)
+|...+++....... + ...++..+...+...|++++|...++...+....+
T Consensus 153 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~------------------------- 207 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG------------------------- 207 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-------------------------
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-------------------------
Confidence 999988887754221 1 23456677778888999999999888776532111
Q ss_pred HHHCCCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 005642 428 MRNTGVKPTIITF--TAILSACDHCGLVKEGQKWFDAMKWQYHIDP---EIEHYSCMVDLFARAGCLNEAVNLIEQMP-- 500 (686)
Q Consensus 428 m~~~~~~p~~~~~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 500 (686)
+..+..... ...+..+...|++++|...+++... ....+ ....+..+..++...|++++|...+++..
T Consensus 208 ----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 208 ----KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC-CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 110000111 1233446688999999999988762 12111 12356778888899999999999888762
Q ss_pred -----CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 501 -----FEADV-GMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 501 -----~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
..++. ..+..+..++...|+.++|...++++++..+
T Consensus 283 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 283 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 11122 2566677788899999999999999888554
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=6.5e-10 Score=117.17 Aligned_cols=176 Identities=13% Similarity=0.011 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhh
Q 005642 121 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF-NSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDR 196 (686)
Q Consensus 121 ~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (686)
++.+.+.++..... .+.+...+..+...|...|++ ++|++.|++..+ | +...|..+...|.+.|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555544433 234566677777777777777 777777776653 2 233444444555555555555555544
Q ss_pred cCC--CChhhHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcc--------CChhhHH
Q 005642 197 TTD--TSSVMWNSMISGYISN---------NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL--------GFLEHGK 257 (686)
Q Consensus 197 ~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------~~~~~a~ 257 (686)
..+ |+...|..+...+... |++++|++.|++..+.. +.+...+..+..++... |++++|.
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 332 3334444444444444 44555555555444421 22334444444444444 4444455
Q ss_pred HHHHHHHHcCCC--chHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 258 QVHGHACKVGVI--DDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 258 ~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
..+++.++.... .+...+..+..+|...|++++|...|++.
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444443210 23444444444444444444444444443
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.11 E-value=2e-09 Score=101.36 Aligned_cols=153 Identities=10% Similarity=0.041 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005642 367 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSA 446 (686)
Q Consensus 367 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 446 (686)
.|+..+......+...|++++|...|..+++...++ +...+..+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------------~~~~~~~~~~~ 51 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ---------------------------------DSVTAYNCGVC 51 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC---------------------------------CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---------------------------------CcHHHHHHHHH
Confidence 345677777788888889998888888877765323 44444445556
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHH
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DV-------GMWSSILRGCV 516 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~li~~~~ 516 (686)
+...|++++|++.+++..+ ..| +...+..++.+|...|++++|...+++. ...| +. ..|..+...+.
T Consensus 52 ~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 52 ADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence 6666666666666666652 334 3555666666666666666666666655 2223 23 33555555666
Q ss_pred hcCChhHHHHHHHHHHccCCC--CchhHHHHHHHHhhcCCc
Q 005642 517 AHGDKGLGRKVAERMIELDPE--NACAYIQLSSIFATSGEW 555 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~ 555 (686)
..|++++|+..++++++.+|+ ++.++..++.+|...|+.
T Consensus 129 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 129 QAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666 566666666666655554
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=9.9e-10 Score=106.95 Aligned_cols=235 Identities=12% Similarity=0.103 Sum_probs=156.8
Q ss_pred HhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC----chhHHHHHHHHHhCCChhhHHHHHH
Q 005642 283 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPIEALDLFC 358 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 358 (686)
...|++++|...|+ +|++++.+...++ ..++..+...+...|++++|+..|+
T Consensus 12 ~~~~~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 67 (283)
T 3edt_B 12 SGLVPRGSAVPLCK------------------------QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN 67 (283)
T ss_dssp -CCSCSSSHHHHHH------------------------HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH------------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 45677888887776 4555555554332 3578888889999999999999998
Q ss_pred HHHHC------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHC
Q 005642 359 NMNKL------DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNT 431 (686)
Q Consensus 359 ~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~ 431 (686)
++.+. +-.| ...++..+...+...|++++|...+.++.+. +++....
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------------------~~~~~~~ 121 (283)
T 3edt_B 68 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI--------------------------REKVLGK 121 (283)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------------------------HHHHHCT
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------------------HHHHcCC
Confidence 88754 2223 3457788888999999999999999876543 2222111
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-----
Q 005642 432 GVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY-----HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP----- 500 (686)
Q Consensus 432 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 500 (686)
..+....++..+...+...|++++|.++++++.+.. .-.| ...++..+..+|.+.|++++|...+++..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 111234677888888999999999999999887420 1133 36678889999999999999999988762
Q ss_pred -----CCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 501 -----FEAD-VGMWSSILRGCVAHGD------KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 501 -----~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..+. ...|..+.......+. +..+...++......|....++..++.+|...|++++|..++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 2233333333333332 33333333333334455667889999999999999999999998765
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=6.5e-09 Score=101.93 Aligned_cols=180 Identities=8% Similarity=-0.052 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHcc-CChHHHHHHHHHHHHhCCCcchhHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL---RM--DKFSLASVISACANI-SSLELGEQVFARVTIIGLDSDQIIST 408 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (686)
.+|+.+...|...|++++|+..|++..+... .+ -..++..+...+... |++++|...|++.++..
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--------- 148 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--------- 148 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH---------
Confidence 3556666666666677666666666554210 01 124566677777775 88888888887665421
Q ss_pred HHHHHHHhchhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHH
Q 005642 409 SLVDFYCKCGYDALALFNEMRNTGVKP-TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEI-----EHYSCMVDL 482 (686)
Q Consensus 409 ~li~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~ 482 (686)
.. .+..+ ...++..+...+.+.|++++|+..|++..+...-.+.. ..+..++.+
T Consensus 149 -----------------~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 149 -----------------AQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp -----------------HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred -----------------Hh---CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 11 11000 13467788889999999999999999988421111121 257778888
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHHccCCCCchhHH
Q 005642 483 FARAGCLNEAVNLIEQM-PFEADVG------MWSSILRGCV--AHGDKGLGRKVAERMIELDPENACAYI 543 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~ 543 (686)
+...|++++|...|++. .+.|+.. .+..++..+. ..+++++|+..++++..++|.....+.
T Consensus 209 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 99999999999999987 3455422 2344555554 346688888888888877775544333
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.05 E-value=5.1e-10 Score=122.79 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSIL 512 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li 512 (686)
+..+++.+...+.+.|++++|++.|++..+ +.| +...+..+..+|.+.|++++|++.|++. ...| +...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 457899999999999999999999999983 457 5889999999999999999999999987 4566 478899999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCCCccceeeccccceeehhh
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVGKLPGCSWADGIAFNCWFLDTM 592 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (686)
.++...|++++|++.++++++++|+++.+|..++.+|.+.|++++|++.+++..+. .|.........+.++...+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l----~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL----KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999999999999999999999999999999999988874 34444333333344444444
Q ss_pred hhhhhcH
Q 005642 593 FLQLANF 599 (686)
Q Consensus 593 ~~~~~~~ 599 (686)
|.++...
T Consensus 161 ~~~A~~~ 167 (723)
T 4gyw_A 161 WTDYDER 167 (723)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.03 E-value=1.9e-08 Score=90.63 Aligned_cols=92 Identities=8% Similarity=-0.023 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVAL 120 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHH
Confidence 34444444455555555555555554443 12233444444444444455555555555444442 22334444444444
Q ss_pred HhcCChhHHHHHHH
Q 005642 283 SKRGMPSDACKLFS 296 (686)
Q Consensus 283 ~~~g~~~~A~~~~~ 296 (686)
...|++++|...++
T Consensus 121 ~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 121 DNLGRFDEAIDSFK 134 (186)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 45555555544444
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=4.2e-08 Score=94.21 Aligned_cols=178 Identities=8% Similarity=-0.023 Sum_probs=118.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCC
Q 005642 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTG 432 (686)
Q Consensus 353 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~ 432 (686)
|+..|++....+ .++..++..+..++...|++++|++++...+..+..
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~------------------------------- 132 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA------------------------------- 132 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-------------------------------
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-------------------------------
Confidence 667777766554 455556667777777888888887777765543310
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CC
Q 005642 433 VKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-----EIEHYSCMVDL--FARAG--CLNEAVNLIEQMP-FE 502 (686)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~ 502 (686)
.-+...+..++..+.+.|+.+.|.+.+++|.+ ..| +..+...+..+ ....| ++.+|..+|+++. ..
T Consensus 133 -~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 133 -EGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp -TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred -cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 01445666677778888888888888888873 345 24444445444 33333 7888888888873 34
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc----------CCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIEL----------DPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 503 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
|+..+-..++.++...|++++|+..++.+.+. +|+++.++..++.+....|+ +|.++++++++.
T Consensus 209 p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 209 PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 55333333444777888888888888877765 47787877777777777776 778888887763
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=2e-08 Score=97.53 Aligned_cols=237 Identities=12% Similarity=0.014 Sum_probs=151.3
Q ss_pred ccCChhhHHHHHHHHHHc-------CCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHH
Q 005642 249 SLGFLEHGKQVHGHACKV-------GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321 (686)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 321 (686)
..|++++|...+++.++. ..+....++..+...|...|++++|...++++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------- 69 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDA----------------------- 69 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHH-----------------------
Confidence 345555555555555442 22334567788888888889998888888743
Q ss_pred HHHHHhhCCCC----CchhHHHHHHHHHhCCChhhHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCChHHHHH
Q 005642 322 AKHIFRTMPNK----SLISWNSMIVGLSQNGSPIEALDLFCNMNKL------DL-RMDKFSLASVISACANISSLELGEQ 390 (686)
Q Consensus 322 A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~t~~~ll~~~~~~~~~~~a~~ 390 (686)
.++.++...+ ...++..+...|...|++++|...|++..+. .. +....++..+...+...|++++|..
T Consensus 70 -l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 70 -LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp -HHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -HHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333333111 2356778888888889998888888887654 11 2235677788888999999999999
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---
Q 005642 391 VFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQY--- 467 (686)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 467 (686)
.++++.+. +........+....++..+...+...|++++|.++++++.+..
T Consensus 149 ~~~~al~~--------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 149 YYRRALEI--------------------------YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHHHHH--------------------------HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------------------HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 99876643 1111100111134578888889999999999999999987421
Q ss_pred ---CCCC-ChhHHHHHHHHHHhcCC------hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 005642 468 ---HIDP-EIEHYSCMVDLFARAGC------LNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535 (686)
Q Consensus 468 ---~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 535 (686)
...+ ....+..+...+...+. +.++...++... ..| ....+..+...+...|++++|...++++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1233 33445555554444333 444444455443 223 35568889999999999999999999998753
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=1.1e-08 Score=86.61 Aligned_cols=129 Identities=15% Similarity=0.212 Sum_probs=112.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCV 516 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~ 516 (686)
.+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|...++++. .+.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788888999999999999998843 22367888899999999999999999999873 3345778888999999
Q ss_pred hcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 517 AHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..|++++|...++++++..|++...+..++.++...|++++|...++++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999887643
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=2.2e-09 Score=93.35 Aligned_cols=123 Identities=9% Similarity=-0.026 Sum_probs=99.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG 519 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g 519 (686)
|...+...|++++|++.++... ...| +...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667788999999888876 3445 4566778889999999999999999887 4555 5788999999999999
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHH-HHHHHhc
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI-RDIMREK 568 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~ 568 (686)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5766653
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.92 E-value=3.2e-08 Score=96.96 Aligned_cols=151 Identities=7% Similarity=-0.034 Sum_probs=69.8
Q ss_pred HHHHHhcCChHHHHHHHhccCC-----CC----hhhHHHHHHHHHccCCHHHHHHHHhhcCC-----CC----hhhHHHH
Q 005642 147 VNLYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTD-----TS----SVMWNSM 208 (686)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l 208 (686)
...|...|++++|...|++..+ .+ ..+|+.+...|.+.|++++|+..|++..+ .+ ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456667777777777765542 11 23445555555555555555555544322 01 2244445
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHCCCCcC-------HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchH------HH
Q 005642 209 ISGYISN-NEDTEALLLFHKMRRNGVLED-------ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV------IV 274 (686)
Q Consensus 209 i~~~~~~-g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~ 274 (686)
...|... |++++|+..|++.++. .|+ ..++..+...+...|++++|...+++..+....... ..
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 5555553 5555555555554431 110 123444444444455555555555544443221110 12
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcc
Q 005642 275 ASALLDTYSKRGMPSDACKLFSELK 299 (686)
Q Consensus 275 ~~~l~~~~~~~g~~~~A~~~~~~~~ 299 (686)
+..+..++...|++++|...|++..
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.89 E-value=7.2e-08 Score=92.70 Aligned_cols=174 Identities=12% Similarity=0.004 Sum_probs=114.5
Q ss_pred CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHH
Q 005642 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD---KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 408 (686)
Q Consensus 332 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (686)
.++..+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+.+++......
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~----- 86 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP----- 86 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-----
Confidence 455667777888888899999999999888752 112 46677788888889999999888888877642110
Q ss_pred HHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--------cCCHHHHHHHHHHHHHhcCCCC-ChhHH---
Q 005642 409 SLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDH--------CGLVKEGQKWFDAMKWQYHIDP-EIEHY--- 476 (686)
Q Consensus 409 ~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~p-~~~~~--- 476 (686)
.....+..+..++.. .|++++|+..|+++.+. .| +....
T Consensus 87 --------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~ 137 (261)
T 3qky_A 87 --------------------------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDAT 137 (261)
T ss_dssp --------------------------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHH
T ss_pred --------------------------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHH
Confidence 012334444444444 67777777777776633 23 22222
Q ss_pred --------------HHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHH
Q 005642 477 --------------SCMVDLFARAGCLNEAVNLIEQM-PFEAD----VGMWSSILRGCVAH----------GDKGLGRKV 527 (686)
Q Consensus 477 --------------~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~ 527 (686)
..++..|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|+..
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 45667777778888887777776 22232 34566666666654 777888888
Q ss_pred HHHHHccCCCCch
Q 005642 528 AERMIELDPENAC 540 (686)
Q Consensus 528 ~~~~~~~~p~~~~ 540 (686)
++++++..|+++.
T Consensus 218 ~~~~~~~~p~~~~ 230 (261)
T 3qky_A 218 YERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHCTTCTH
T ss_pred HHHHHHHCCCChH
Confidence 8888887787643
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=3.8e-09 Score=91.87 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...|.+.|++++|++.|++..+ +.| +...|..++.+|.+.|++++|...|++. ...| +...|..+..
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE 107 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566788899999999999999999983 456 6899999999999999999999999987 4566 5788999999
Q ss_pred HHHhcCChhHHHHH-HHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 514 GCVAHGDKGLGRKV-AERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 514 ~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
.+.+.|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999876654 699999999999999999999988875
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=3.4e-07 Score=84.77 Aligned_cols=174 Identities=7% Similarity=-0.041 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHC
Q 005642 352 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNT 431 (686)
Q Consensus 352 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~ 431 (686)
+|+..|++..+.| +...+..+...+...+++++|...|++..+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------------------------------- 48 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------------------------------- 48 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------------------------
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------------------------
Confidence 4666677766653 55566666666667777777777777665544
Q ss_pred CCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCC-CC
Q 005642 432 GVKPTIITFTAILSACDHCG----LVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFAR----AGCLNEAVNLIEQMP-FE 502 (686)
Q Consensus 432 ~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~ 502 (686)
++..+..|...|.. + ++++|.++|++..+ . -++..+..|..+|.. .+++++|++.|++.. ..
T Consensus 49 ----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 49 ----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS 119 (212)
T ss_dssp ----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST
T ss_pred ----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC
Confidence 55666667667766 6 89999999998873 2 267778888888887 889999999999874 44
Q ss_pred CC---HHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc-C-----CcchHHHHHHHHHhcC
Q 005642 503 AD---VGMWSSILRGCVA----HGDKGLGRKVAERMIELDPENACAYIQLSSIFATS-G-----EWEKSSLIRDIMREKH 569 (686)
Q Consensus 503 p~---~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 569 (686)
|. +..+..|...|.. .++.++|+..++++.+. |.++.++..|+.+|... | ++++|..++++..+.|
T Consensus 120 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 120 ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 43 7788888888888 78999999999999987 66777899999999764 3 8999999999988876
Q ss_pred C
Q 005642 570 V 570 (686)
Q Consensus 570 ~ 570 (686)
.
T Consensus 199 ~ 199 (212)
T 3rjv_A 199 F 199 (212)
T ss_dssp C
T ss_pred C
Confidence 4
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=4e-07 Score=85.17 Aligned_cols=204 Identities=11% Similarity=-0.035 Sum_probs=127.1
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcch--hHHHHH
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR-MD-KFSLASVISACANISSLELGEQVFARVTIIGLDSDQ--IISTSL 410 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 410 (686)
..+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...|+.+++....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34555667777788888888888888764221 11 245667777788888888888888887776433211 123333
Q ss_pred HHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCCh
Q 005642 411 VDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCL 489 (686)
Q Consensus 411 i~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 489 (686)
...|.+.+..++ ..|..+...+...|+.++|...|+++.+ ..|+ ............-.+..
T Consensus 85 g~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 85 GLTNMALDDSAL---------------QGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHC-----------------------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh---------------hhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHHHHHHHH
Confidence 333332221111 1122333445567899999999999883 3453 33332221111100000
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc---hhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 490 NEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA---CAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 490 ~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+.
T Consensus 147 ---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 147 ---------------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp ---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11123466778899999999999999999999875 568899999999999999999999888
Q ss_pred hcCCC
Q 005642 567 EKHVG 571 (686)
Q Consensus 567 ~~~~~ 571 (686)
..++.
T Consensus 212 ~~~~~ 216 (225)
T 2yhc_A 212 ANSSN 216 (225)
T ss_dssp HCCSC
T ss_pred hhCCC
Confidence 76544
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.7e-08 Score=111.25 Aligned_cols=171 Identities=11% Similarity=0.001 Sum_probs=137.8
Q ss_pred HhCCChhhHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 005642 345 SQNGSPIEALDLFCNMN--------KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 416 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 416 (686)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++.+++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV----------------- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------------
Confidence 67889999999999887 32 23345667777888888889988888888776643
Q ss_pred chhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHH
Q 005642 417 CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNL 495 (686)
Q Consensus 417 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 495 (686)
+-+...|..+..++...|++++|.+.|++..+ +.| +...+..+..++.+.|++++ .+.
T Consensus 464 -----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 464 -----------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred -----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHH
Confidence 22667788888889999999999999999883 346 67888999999999999999 999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 496 IEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 496 ~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
|++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+
T Consensus 523 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9887 3455 577889999999999999999999999999999999999999999877666
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=1.5e-08 Score=87.75 Aligned_cols=102 Identities=8% Similarity=0.000 Sum_probs=91.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 468 HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 468 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
.+.| +...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 5666 5778888999999999999999999988 3455 68889999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 545 LSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
++.+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999888754
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.81 E-value=7.3e-07 Score=85.64 Aligned_cols=185 Identities=10% Similarity=0.047 Sum_probs=118.6
Q ss_pred HHHHHhhCCC---CCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 322 AKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 322 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
|...|++... ++..++..+..++...|++++|++++.+....|.. -+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444432 34455566777788888888888888887665432 2445666777788888888888888887765
Q ss_pred hCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHH--Hh--ccCCHHHHHHHHHHHHHhcCCCCCh
Q 005642 398 IGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSA--CD--HCGLVKEGQKWFDAMKWQYHIDPEI 473 (686)
Q Consensus 398 ~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~--~~g~~~~A~~~~~~~~~~~~~~p~~ 473 (686)
.. |+.. ..+..+...++.+ .. ..+++.+|..+|+++.+ ..|+.
T Consensus 165 ~~--~d~~----------------------------~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~ 211 (310)
T 3mv2_B 165 AI--EDTV----------------------------SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTW 211 (310)
T ss_dssp HS--CHHH----------------------------HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSH
T ss_pred cC--cccc----------------------------ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCc
Confidence 42 2000 0012333333333 22 23478888888888762 33543
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-C----------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 474 EHYSCMVDLFARAGCLNEAVNLIEQMP-F----------EA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
.+...+..++.+.|++++|.+.++.+. . .| ++.++..+|......|+ +|.+++.++.+..|+++.+
T Consensus 212 ~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 212 KTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 333344447888899999988887652 1 24 46666677777677776 7889999999999988763
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=9.1e-08 Score=92.00 Aligned_cols=171 Identities=8% Similarity=-0.040 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
+...+......+.+.|++++|...|+.+++..... +.....+..+..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------------------------------~~~~~a~~~lg~~~ 62 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-------------------------------EWAADAQFYLARAY 62 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-------------------------------TTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------------------------------cchHHHHHHHHHHH
Confidence 44556666677778888888888887776543110 00156777888899
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHh--------cCChHHHHHHHHhCC-CCCC-HHHH--------
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFAR--------AGCLNEAVNLIEQMP-FEAD-VGMW-------- 508 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~-~~p~-~~~~-------- 508 (686)
.+.|++++|...|++..+...-.|. ...+..++.++.. .|++++|...|+++. ..|+ ...+
T Consensus 63 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~ 142 (261)
T 3qky_A 63 YQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE 142 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH
Confidence 9999999999999999854332332 5678888999998 999999999999872 3343 2222
Q ss_pred ---------HHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHHhhc----------CCcchHHHHHHHHH
Q 005642 509 ---------SSILRGCVAHGDKGLGRKVAERMIELDPEN---ACAYIQLSSIFATS----------GEWEKSSLIRDIMR 566 (686)
Q Consensus 509 ---------~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~ 566 (686)
..+...+...|++++|+..++++++..|++ +.++..++.+|... |++++|...++++.
T Consensus 143 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 143 LRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 556788999999999999999999999984 45788899999876 89999999999988
Q ss_pred hcC
Q 005642 567 EKH 569 (686)
Q Consensus 567 ~~~ 569 (686)
+..
T Consensus 223 ~~~ 225 (261)
T 3qky_A 223 QIF 225 (261)
T ss_dssp HHC
T ss_pred HHC
Confidence 754
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.7e-07 Score=86.56 Aligned_cols=160 Identities=8% Similarity=0.008 Sum_probs=102.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHHccCChHHHHHHHHHHHHhCCC
Q 005642 339 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLAS----------------VISACANISSLELGEQVFARVTIIGLD 401 (686)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (686)
.....+...|++++|+..|++..+. .|+. ..+.. +..++.+.|++++|...|+..++..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-- 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence 3344555666666666666666553 2322 22222 5555566666666666666555432
Q ss_pred cchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHH
Q 005642 402 SDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMV 480 (686)
Q Consensus 402 ~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 480 (686)
+-+...+..+...+...|++++|.+.|++..+ +.| +...+..++
T Consensus 85 --------------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg 129 (208)
T 3urz_A 85 --------------------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLG 129 (208)
T ss_dssp --------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred --------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHH
Confidence 12567788888888888999999999998873 456 577888888
Q ss_pred HHHHhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 005642 481 DLFARAGC--LNEAVNLIEQMPFEADV--GMWSSILRGCVAHGDKGLGRKVAERMIELDPEN 538 (686)
Q Consensus 481 ~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 538 (686)
.+|...|. .+.+...++... .|+. ..+.....++...|++++|+..+++++++.|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 130 NYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 88766554 445566666653 3333 334445556677888999999999999988853
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=1.6e-07 Score=91.55 Aligned_cols=162 Identities=6% Similarity=-0.060 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 368 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSAC 447 (686)
Q Consensus 368 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 447 (686)
+...+..+...+...|++++|...|+.+.+.. +-+...+..+...+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------------------P~~~~a~~~la~~~ 161 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS----------------------------------NQNGEIGLLLAETL 161 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------------------TSCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------------------CcchhHHHHHHHHH
Confidence 34455566666677777777777777666543 12566777888888
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYS-CMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A 524 (686)
...|++++|...++++.. ..|+..... .....+...++.++|...+++. ...| +...+..+...+...|++++|
T Consensus 162 ~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A 238 (287)
T 3qou_A 162 IALNRSEDAEAVLXTIPL---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEA 238 (287)
T ss_dssp HHTTCHHHHHHHHTTSCG---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhCch---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence 888999999998888762 345543322 2333366677788888888776 3344 577788888888899999999
Q ss_pred HHHHHHHHccCCCC--chhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 525 RKVAERMIELDPEN--ACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 525 ~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
+..++++++.+|++ ..++..++.++...|+.++|...+++..
T Consensus 239 ~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 239 LELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999988887 7788889999999999998888877654
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=5.8e-07 Score=88.62 Aligned_cols=119 Identities=8% Similarity=-0.002 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--C--ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HH
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHID--P--EIEHYSCMVDLFARAGCLNEAVNLIEQMP-F---EAD----VG 506 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~ 506 (686)
++..+...|.. |++++|++.|++..+...-. + ...++..+..+|.+.|++++|+..|++.. . .++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 44455555555 66666666666654211100 0 13456666777777777777777776651 1 111 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchh-----HHHHHHHHhhcCCcchHHH
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACA-----YIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 560 (686)
.+..++..+...|++++|...+++++ ..|+.... ...++.++ ..|+.+.+.+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 45566667777788888888888888 88865432 33344444 4566554444
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=5.4e-06 Score=87.09 Aligned_cols=200 Identities=9% Similarity=-0.062 Sum_probs=116.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHC-
Q 005642 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNT- 431 (686)
Q Consensus 353 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~- 431 (686)
+..+|+++... .+.+...|...+.-+.+.|+.+.|..+++..+.. +.+...+...... ...++ . ++.+.+.
T Consensus 198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~-~---~~~l~~~~ 269 (493)
T 2uy1_A 198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEA-V---YGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTH-H---HHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhH-H---HHHHHHHH
Confidence 44556665553 2334455555555555666666666666666655 3232222211111 01111 1 1111110
Q ss_pred --------CC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC
Q 005642 432 --------GV---KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG-CLNEAVNLIEQM 499 (686)
Q Consensus 432 --------~~---~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 499 (686)
+. ......|...+....+.++.+.|..+|+.+ +..+ .+...|...+..-.+.+ +.+.|..+|+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 00 111245667777777778899999999987 2221 24455544333333333 689999999876
Q ss_pred C--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 500 P--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 500 ~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
- ...++..|...++.....|+.+.|..+++++ +.....|...+..-...|+.+.+..++++..+
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 2223555677777778889999999999887 33556677777777778999999887777764
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=6.3e-08 Score=81.12 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=65.6
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 469 IDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 469 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
+.|+ ...+...+..|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4452 455666666666677777777766665 2333 456666666677777777777777777777777777777777
Q ss_pred HHHHhhcCCcchHHHHHHHHHh
Q 005642 546 SSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777776655
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=9.3e-08 Score=80.06 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=98.3
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005642 433 VKPTI-ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMW 508 (686)
Q Consensus 433 ~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 508 (686)
+.|+. ..+......+.+.|++++|++.|++..+ +.| +...|..+..+|.+.|++++|+..|++. ...| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34443 5677888899999999999999999883 345 7899999999999999999999999987 3445 57889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
..+..++...|++++|+..++++++++|++..++..+..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999888877764
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=7.2e-08 Score=94.10 Aligned_cols=134 Identities=8% Similarity=-0.008 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 005642 434 KPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEADVGMWSSI 511 (686)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 511 (686)
+.+...+..+...+...|++++|...|++..+ ..| +...+..+..++.+.|++++|...++++. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 33556777888889999999999999999983 356 68899999999999999999999999984 56765544333
Q ss_pred HH-HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 512 LR-GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 512 i~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
.. .+...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++.+..+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 33 366788899999999999999999999999999999999999999999999987543
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.71 E-value=3.9e-07 Score=84.09 Aligned_cols=158 Identities=9% Similarity=-0.022 Sum_probs=93.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHH----------------HHHHHHccCChhhHHHHHHHHHHcCCCc
Q 005642 208 MISGYISNNEDTEALLLFHKMRRNGVLED-ASTLAS----------------VLSACSSLGFLEHGKQVHGHACKVGVID 270 (686)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 270 (686)
....+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...+++.++.. +.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 344455566666666666666552 332 223333 5666667777777777777777654 33
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCC--HHHHHHHHhhCCCCCch--hHHHHHHH
Q 005642 271 DVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGR--IEDAKHIFRTMPNKSLI--SWNSMIVG 343 (686)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~li~~ 343 (686)
+...+..+..+|...|++++|...|++.. +.+..++..+..+|...|+ .+.+...+.....+++. .+.....+
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 55666667777777777777777777665 3345566666666554432 34455666666655543 33444555
Q ss_pred HHhCCChhhHHHHHHHHHHCCCCCCHH
Q 005642 344 LSQNGSPIEALDLFCNMNKLDLRMDKF 370 (686)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 370 (686)
+...|++++|+..|++..+ ..|+..
T Consensus 167 ~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 6667777888888877776 355543
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=2e-07 Score=100.80 Aligned_cols=156 Identities=6% Similarity=-0.137 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005642 383 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWF 460 (686)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 460 (686)
|++++|.+.++++.+.. +.+...+..+...|.+.|+ +|.+.+++..+.... +...+..+...+...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56677777777665542 2223344444444444443 444444444433211 2344444444444444444444444
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHHcc
Q 005642 461 DAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAH---GDKGLGRKVAERMIEL 534 (686)
Q Consensus 461 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 534 (686)
++..+ ..| +...+..+..+|.+.|++++|.+.|++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 44442 122 3344444444444444444444444443 1222 233444444444444 4444444444444444
Q ss_pred CCCCchhHH
Q 005642 535 DPENACAYI 543 (686)
Q Consensus 535 ~p~~~~~~~ 543 (686)
+|++...+.
T Consensus 158 ~p~~~~~~~ 166 (568)
T 2vsy_A 158 GVGAVEPFA 166 (568)
T ss_dssp TCCCSCHHH
T ss_pred CCcccChHH
Confidence 444444333
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=3e-07 Score=85.14 Aligned_cols=127 Identities=12% Similarity=0.013 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGC 515 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~ 515 (686)
..+..+...+...|++++|.+.|++.. .|+...+..++.+|.+.|++++|...|++. ...| +...|..+...+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 345566778889999999999998763 568899999999999999999999999987 3334 678899999999
Q ss_pred HhcCChhHHHHHHHHHHccCCCCc----------------hhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 516 VAHGDKGLGRKVAERMIELDPENA----------------CAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 516 ~~~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|+..++++++..|++. .++..++.+|...|++++|.+.+++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999999888877 889999999999999999999999888654
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.69 E-value=4.1e-07 Score=76.68 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 283 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 283 (686)
+|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++.+.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555556666666666666666655532 2344455555555556666666666666655543 223445555555566
Q ss_pred hcCChhHHHHHHHhc
Q 005642 284 KRGMPSDACKLFSEL 298 (686)
Q Consensus 284 ~~g~~~~A~~~~~~~ 298 (686)
..|++++|...++++
T Consensus 81 ~~~~~~~A~~~~~~~ 95 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKA 95 (136)
T ss_dssp TTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH
Confidence 666666665555543
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=6.3e-06 Score=86.62 Aligned_cols=353 Identities=10% Similarity=0.034 Sum_probs=215.1
Q ss_pred hcC-ChHHHHHHHhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCC-hhHHHHHH
Q 005642 152 KCG-DFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNE-DTEALLLF 225 (686)
Q Consensus 152 ~~g-~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~ 225 (686)
+.| +++.|+.+|+.+.+ |. |+++.+..+|++... |++..|...+.-..+.+. .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 346 37788888877653 33 899999999998776 788899988887777663 45677788
Q ss_pred HHHHHC-CCC-cCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc-------------C
Q 005642 226 HKMRRN-GVL-EDASTLASVLSACSS----LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR-------------G 286 (686)
Q Consensus 226 ~~m~~~-g~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-------------g 286 (686)
+..+.. |.. ++...|...+..+.. .++.+.+..+|+.+++.....-...|......-... +
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 887764 433 366677777766542 467888999999999853322233444333321111 1
Q ss_pred ChhHHHHHHHhccc----CCchhHHHHHHHHHhCC--C-----HHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChhh
Q 005642 287 MPSDACKLFSELKV----YDTILLNTMITVYSSCG--R-----IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIE 352 (686)
Q Consensus 287 ~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 352 (686)
.+..|..+++++.. .+...|...+.--...+ - .+.+..+|+++.. .++..|...+.-+.+.|+.++
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 12233333433331 13335555444432221 1 2345667776654 345678888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC---------C---CcchhHHHHHHHHHHhchh-
Q 005642 353 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG---------L---DSDQIISTSLVDFYCKCGY- 419 (686)
Q Consensus 353 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~~~- 419 (686)
|..+|++.... |....+... +......++ +++.+.+.- . .....+|...+....+.+.
T Consensus 232 ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 232 AKKVVERGIEM---SDGMFLSLY---YGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHH---CCSSHHHHH---HHHHTTCTH---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhC---CCcHHHHHH---HHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 99999999887 544433222 222111111 133332211 0 1112445555665555444
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005642 420 -DALALFNEMRNTGVKPTIITFTAILSACD-HCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIE 497 (686)
Q Consensus 420 -~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (686)
.|..+|++. .. ...+...|...+..-. ..++.+.|..+|+...+..+ -++..+...++...+.|+.+.|..+|+
T Consensus 303 ~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 303 ELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788899988 32 2234444443222212 23468999999999885432 245566777888888999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 498 QMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 498 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
++. .....|...+.--...|+.+.+..+++++.+
T Consensus 379 r~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 379 RLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 983 3577788888888888999999888888876
No 112
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=2.9e-07 Score=101.53 Aligned_cols=164 Identities=10% Similarity=-0.063 Sum_probs=82.7
Q ss_pred HccCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcc
Q 005642 182 ANCGKMNDARRVFDRTT-----------DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 250 (686)
Q Consensus 182 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 250 (686)
...|++++|++.|++.. ..+...|..+...+.+.|++++|++.|++..+.+ +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44455555555554443 1234455555555555555555555555555431 22344555555555555
Q ss_pred CChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc---cCCchhHHHHHHHHHhCCCHHHHHHHHh
Q 005642 251 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFR 327 (686)
Q Consensus 251 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 327 (686)
|++++|...|+++++.. +.+...+..+..+|.+.|++++ ...|++.. +.+...|..+..++.+.|++++|.+.|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555543 2234445555555555555555 55555544 2234455555555555566666666655
Q ss_pred hCCCCCc---hhHHHHHHHHHhCC
Q 005642 328 TMPNKSL---ISWNSMIVGLSQNG 348 (686)
Q Consensus 328 ~~~~~~~---~~~~~li~~~~~~g 348 (686)
+..+.++ ..|..+..++...+
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC---
T ss_pred hhcccCcccHHHHHHHHHHHHccC
Confidence 5554322 34444444444433
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=1.7e-07 Score=83.89 Aligned_cols=129 Identities=7% Similarity=-0.047 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDL-FARAGCLNEAVNLIEQM-PFEA-DVGMWSSIL 512 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li 512 (686)
+...+..+...+...|++++|...+++... ..|+...+..+... +...+...+|...+++. ...| +...+..+.
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la 115 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA 115 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 556677777778888888888888887662 22333333222222 12222333466666665 3445 467777788
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCC--chhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPEN--ACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
..+...|++++|+..++++++.+|+. +..+..++.++...|+.++|...+++...
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88888888888888888888888764 44788888888888888888888776543
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=1.2e-06 Score=80.90 Aligned_cols=158 Identities=10% Similarity=-0.015 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC----ChhHHHHHHHhcccC-CchhHHHHHHH
Q 005642 238 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG----MPSDACKLFSELKVY-DTILLNTMITV 312 (686)
Q Consensus 238 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~-~~~~~~~li~~ 312 (686)
.++..+...+...+++++|...|++..+.| +...+..|..+|.. + ++++|...|++...+ ++.++..|...
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~ 94 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333334444444444444444444444433 23333334444443 3 444444444444322 33344444444
Q ss_pred HHh----CCCHHHHHHHHhhCCCCC-----chhHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005642 313 YSS----CGRIEDAKHIFRTMPNKS-----LISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 379 (686)
Q Consensus 313 ~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 379 (686)
|.. .+++++|...|++..+.+ +.++..+...|.. .+++++|+..|++..+. ..+...+..+...+
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMF 172 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 444 455555555555555432 4667777777776 67778888888887765 23334555555555
Q ss_pred Hcc-C-----ChHHHHHHHHHHHHhCCC
Q 005642 380 ANI-S-----SLELGEQVFARVTIIGLD 401 (686)
Q Consensus 380 ~~~-~-----~~~~a~~~~~~~~~~~~~ 401 (686)
... | ++++|...|+...+.|.+
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 432 2 778888888877777643
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=5.2e-08 Score=84.30 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=89.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 468 HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 468 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4556 5677888889999999999999999987 3444 67888899999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 545 LSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
++.+|...|++++|.+.+++..+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999888754
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=8.2e-07 Score=79.37 Aligned_cols=155 Identities=10% Similarity=0.032 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhcCC--CChhhHHHHHHH-HHhc
Q 005642 142 LGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISG-YISN 215 (686)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~ 215 (686)
.+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...|++... |+...+..+... +...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 345566677788888888888888874 3455677777888888888888888887764 233322222211 1222
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChhHHHHH
Q 005642 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKL 294 (686)
Q Consensus 216 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 294 (686)
+...+|+..|++..+.. +-+...+..+..++...|++++|...++.+++..+.+ +...+..+..++...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 33345677777777641 2346677777777778888888888888777765432 345667777777777887777777
Q ss_pred HHh
Q 005642 295 FSE 297 (686)
Q Consensus 295 ~~~ 297 (686)
|++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=5.7e-07 Score=88.70 Aligned_cols=125 Identities=6% Similarity=-0.039 Sum_probs=62.6
Q ss_pred HHccCChhhHHHHHHHHHHcC----CC-chHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHH
Q 005642 247 CSSLGFLEHGKQVHGHACKVG----VI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 321 (686)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~g----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 321 (686)
+...|++++|...+.+..+.. -. .-..+++.+..+|.+.|++++|...|++
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~------------------------ 101 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK------------------------ 101 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHH------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH------------------------
Confidence 344455555555544443321 00 0123455566666666777777666652
Q ss_pred HHHHHhhCCCCC--chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHH
Q 005642 322 AKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-----DKFSLASVISACANISSLELGEQVFAR 394 (686)
Q Consensus 322 A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~~~~~~~~~~~a~~~~~~ 394 (686)
|.+++.....+. ..++..+...|.. |++++|+..|++..+..... ...++..+...+.+.|++++|...|++
T Consensus 102 Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 102 ASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 223333222221 2355666666666 77777777777665421000 023444555555556666666655554
Q ss_pred HH
Q 005642 395 VT 396 (686)
Q Consensus 395 ~~ 396 (686)
++
T Consensus 181 al 182 (307)
T 2ifu_A 181 EK 182 (307)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=5.4e-07 Score=97.48 Aligned_cols=146 Identities=8% Similarity=-0.044 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 005642 316 CGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 392 (686)
Q Consensus 316 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 392 (686)
.|++++|.+.|++..+. +...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46778888888887652 44678888888888888888888888887752 334667777888888888888888888
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-
Q 005642 393 ARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP- 471 (686)
Q Consensus 393 ~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p- 471 (686)
++..+.. +.+...+..+...+...|++++|.+.+++..+ ..|
T Consensus 81 ~~al~~~----------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~ 123 (568)
T 2vsy_A 81 QQASDAA----------------------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---LLPE 123 (568)
T ss_dssp HHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred HHHHhcC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC
Confidence 7776543 22677899999999999999999999999884 345
Q ss_pred ChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 005642 472 EIEHYSCMVDLFARA---GCLNEAVNLIEQM 499 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 499 (686)
+...+..+..++... |++++|.+.+++.
T Consensus 124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 678899999999999 9999999999987
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=5.8e-07 Score=79.22 Aligned_cols=128 Identities=10% Similarity=0.096 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...+...|++++|...|++..+. .| +...+..++.++...|++++|...+++. ...| +...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 356777888889999999999999998842 34 6888999999999999999999999987 3334 5778899999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH--HHhhcCCcchHHHHHHHHHh
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSS--IFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+...|++++|...++++++..|++...+..+.. .+...|++++|.+.+....+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999998887755444 48888999999999887654
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=6e-07 Score=75.61 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSIL 512 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li 512 (686)
+...+..+...+...|++++|...|++.. ...| +...+..+..++...|++++|...+++.. ..| +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45667777777888888888888888876 2344 56777778888888888888888887762 333 566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCC
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGE 554 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 554 (686)
..+...|++++|...++++++..|.+...+..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 778888888888888888888888777777777777766553
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=7e-07 Score=74.80 Aligned_cols=119 Identities=9% Similarity=-0.005 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
+...+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|...+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 4567778888889999999999999998842 2236788889999999999999999999887 2334 5778888889
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcc
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWE 556 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 556 (686)
.+...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999888999999998888764
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.55 E-value=2.5e-05 Score=75.82 Aligned_cols=162 Identities=9% Similarity=-0.017 Sum_probs=101.4
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH--HHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHH
Q 005642 348 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE--LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALF 425 (686)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~ 425 (686)
+++++++.+++++.+. -+-+..+++.-.-.+.+.|.++ ++.+.++.+++...
T Consensus 124 ~~~~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~------------------------- 177 (306)
T 3dra_A 124 FDPYREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL------------------------- 177 (306)
T ss_dssp CCTHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-------------------------
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-------------------------
Confidence 5566666666666654 2334445544444444445444 55555555444432
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCC------HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHH-HHHHHH
Q 005642 426 NEMRNTGVKPTIITFTAILSACDHCGL------VKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNE-AVNLIE 497 (686)
Q Consensus 426 ~~m~~~~~~p~~~~~~~ll~~~~~~g~------~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~ 497 (686)
. |...|+.-...+.+.+. ++++++.++++.. ..| |...|+.+...+.+.|+..+ +..+.+
T Consensus 178 --------~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 178 --------K-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp --------T-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred --------C-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 2 44445444444444444 7788888888773 345 77888888888888887444 455666
Q ss_pred hCC-C----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc-cCCCCchhHHHHHH
Q 005642 498 QMP-F----EADVGMWSSILRGCVAHGDKGLGRKVAERMIE-LDPENACAYIQLSS 547 (686)
Q Consensus 498 ~~~-~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~ 547 (686)
+.. . ..+...+..++..+.+.|+.++|.++++.+.+ .+|.+...|...+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 652 1 23567788888888888888888888888886 78877776665554
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=9.6e-07 Score=73.23 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRG 514 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~ 514 (686)
...+..+...+...|++++|.++++++.+. .+.+...+..++..+.+.|++++|...++++. .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 467777888888899999999999988743 22367788888888999999999999888872 33367778888888
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC
Q 005642 515 CVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSG 553 (686)
Q Consensus 515 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 553 (686)
+...|++++|...++++++..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999989988888888887776543
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.52 E-value=2.1e-05 Score=76.37 Aligned_cols=212 Identities=11% Similarity=0.052 Sum_probs=150.3
Q ss_pred ChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCcchhHHHHHHHHH----Hhc---h
Q 005642 349 SPIEALDLFCNMNKLDLRMDKF-SLASVISACANIS--SLELGEQVFARVTIIGLDSDQIISTSLVDFY----CKC---G 418 (686)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~ 418 (686)
..++|+.++++++.. .|+.. .++.--..+...+ +++++++.++.++.... -+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence 335677777777663 44433 3454445555556 77777777777766542 2333343322222 222 2
Q ss_pred h--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC-----
Q 005642 419 Y--DALALFNEMRNTGVKPTIITFTAILSACDHCGLVK--EGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC----- 488 (686)
Q Consensus 419 ~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----- 488 (686)
+ +++.+++++.+...+ +..+|+.-...+.+.|.++ ++++.++++.+ ..| |...|+.-..++.+.|.
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhh
Confidence 2 777777777776544 7777877777777778877 99999999984 345 77788877777877776
Q ss_pred -hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH-HHHHHHHHHccC---CCCchhHHHHHHHHhhcCCcchHHHH
Q 005642 489 -LNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGL-GRKVAERMIELD---PENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 489 -~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
++++++.++++ ...| |...|+.+...+.+.|+... ...+..++.+++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 88899988877 3445 68889988888888887444 566888888766 77888999999999999999999999
Q ss_pred HHHHHh
Q 005642 562 RDIMRE 567 (686)
Q Consensus 562 ~~~~~~ 567 (686)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=2.2e-07 Score=83.21 Aligned_cols=122 Identities=7% Similarity=0.075 Sum_probs=100.4
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCh--
Q 005642 447 CDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRG-CVAHGDK-- 521 (686)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~-~~~~g~~-- 521 (686)
+...|++++|...+++..+. .+.+...+..++.+|...|++++|...|++.. ..| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 34578899999999988742 22367899999999999999999999999873 334 67778888888 7789998
Q ss_pred hHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 522 GLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 522 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
++|+..++++++..|+++.++..++.+|...|++++|...++++.+..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999998887543
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=6.3e-07 Score=76.82 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=86.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 468 HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 468 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3455 4566777888888999999999999887 3444 67778888899999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 545 LSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
++.+|...|++++|.+.+++..+..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887654
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=5.3e-07 Score=90.09 Aligned_cols=129 Identities=12% Similarity=0.012 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----------------hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----------------IEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+...+..+...+.+.|++++|+..|++..+ +.|+ ...|..+..+|.+.|++++|+..|++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS---WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346778888899999999999999999884 2343 488999999999999999999999988
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHH-HHHHHHHh
Q 005642 500 -PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS-LIRDIMRE 567 (686)
Q Consensus 500 -~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 567 (686)
...| +...|..+..++...|++++|+..+++++++.|++..++..++.++...|++++|. ..++.|.+
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 67889999999999999999999999999999999999999999999999999994 46676654
No 128
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.50 E-value=4.1e-07 Score=85.15 Aligned_cols=134 Identities=9% Similarity=0.037 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---H-HHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD---V-GMWS 509 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-~~~~ 509 (686)
+...+..+...+...|++++|+..|+++.+.....|. ...+..++.+|.+.|++++|+..|+++ ...|+ . ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556666778888888888888888743222222 457778888888888888888888876 22332 1 2344
Q ss_pred HHHHHHH------------------hcCChhHHHHHHHHHHccCCCCchhH-----------------HHHHHHHhhcCC
Q 005642 510 SILRGCV------------------AHGDKGLGRKVAERMIELDPENACAY-----------------IQLSSIFATSGE 554 (686)
Q Consensus 510 ~li~~~~------------------~~g~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~ 554 (686)
.+..++. ..|+.++|+..++++++..|+++.++ ..++..|...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4444443 36789999999999999999987655 467888999999
Q ss_pred cchHHHHHHHHHhcC
Q 005642 555 WEKSSLIRDIMREKH 569 (686)
Q Consensus 555 ~~~a~~~~~~~~~~~ 569 (686)
+++|...++++.+..
T Consensus 163 ~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDY 177 (225)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999999998754
No 129
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.50 E-value=7.7e-07 Score=72.21 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=83.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CchhHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE--NACAYIQLSS 547 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 547 (686)
+...+..++..+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++..|+ +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4566777888888888888888888876 2333 5777888889999999999999999999999999 8899999999
Q ss_pred HHhhc-CCcchHHHHHHHHHhcCC
Q 005642 548 IFATS-GEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 548 ~~~~~-g~~~~a~~~~~~~~~~~~ 570 (686)
++... |++++|.+.++...+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876543
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.49 E-value=3.6e-06 Score=77.66 Aligned_cols=125 Identities=11% Similarity=0.022 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChh
Q 005642 143 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDT 219 (686)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 219 (686)
+..+...+...|++++|...|++..+++...+..+...+.+.|++++|...|++..+ .+..+|..+...|...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 445666677778888888888888777777777777777778888888777776542 35667777777777778888
Q ss_pred HHHHHHHHHHHCCC--------------Cc-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 005642 220 EALLLFHKMRRNGV--------------LE-DASTLASVLSACSSLGFLEHGKQVHGHACKVG 267 (686)
Q Consensus 220 ~A~~~~~~m~~~g~--------------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 267 (686)
+|++.|++..+..- .| ....+..+..++...|++++|...++...+..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88887777776421 11 12456666666777777777777777776654
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=1.6e-05 Score=77.66 Aligned_cols=198 Identities=8% Similarity=-0.041 Sum_probs=106.9
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhh---HHHHHHHHHccCCHHHHHHHHhhcCCC---Ch------h
Q 005642 136 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC---LSALISGYANCGKMNDARRVFDRTTDT---SS------V 203 (686)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~---~~------~ 203 (686)
..|+..+...+...+.-. ++ .++..-...+... +...+..+...|++++|...+++..+. +. .
T Consensus 42 ~~~~~~~l~~i~~~l~~~--~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIP--II---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCCHHHHHHHHHHHTCC--TH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--HH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 456666666665554321 11 2222222222222 222345566677777777777654331 11 1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHccCChhhHHHHHHHHHHc-----CCCc-hH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVL-ED----ASTLASVLSACSSLGFLEHGKQVHGHACKV-----GVID-DV 272 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~-~~ 272 (686)
.+..+...+...|++++|+..|++..+.... ++ ..+++.+..++...|++++|...++++++. +..+ ..
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 2334555556666777777777777663211 12 225666666777777777777777766631 1111 12
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCC--chhHHHHHHHHHhCCC-
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGS- 349 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~- 349 (686)
.++..+...|.+.|++++|...+++ |.++........ ..+|..+..++.+.|+
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~------------------------al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 252 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNK------------------------AIEISCRINSMALIGQLYYQRGECLRKLEYE 252 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH------------------------HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 3556666667777777777666653 222222222211 3467777777777774
Q ss_pred hhhHHHHHHHHHH
Q 005642 350 PIEALDLFCNMNK 362 (686)
Q Consensus 350 ~~~A~~~~~~m~~ 362 (686)
+++|...|++...
T Consensus 253 ~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 253 EAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4777777776653
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.45 E-value=4.9e-07 Score=78.05 Aligned_cols=100 Identities=9% Similarity=0.049 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...+.+.|++++|...|+++.+ +.| +...|..+..+|...|++++|+..|++. ...| ++..|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 45677888899999999999999999983 456 6889999999999999999999999998 3555 5778999999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
++...|++++|+..+++++++.|+.+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999653
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.1e-06 Score=73.35 Aligned_cols=96 Identities=18% Similarity=0.076 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
...+..++..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666677777777777777777766 2334 56777888888888888888888888888888888888888888888
Q ss_pred hcCCcchHHHHHHHHHhc
Q 005642 551 TSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~ 568 (686)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888877764
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=2.3e-05 Score=76.51 Aligned_cols=128 Identities=9% Similarity=-0.027 Sum_probs=100.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMP-----FEAD----VG 506 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~ 506 (686)
+..+...+...+++++|+..++++.+...-.++ ..+++.++.+|...|++++|...|+++- ...+ ..
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 344666777888999999999999842222223 3478999999999999999999998872 2112 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------chhHHHHHHHHhhcCC-cchHHHHHHHHHh
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPEN------ACAYIQLSSIFATSGE-WEKSSLIRDIMRE 567 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 567 (686)
++..+...|...|++++|+..+++++++.+.. +.+|..++.+|...|+ +++|.+.+++..+
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 68889999999999999999999999854332 5678999999999995 6999999988775
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.43 E-value=5.2e-07 Score=87.61 Aligned_cols=194 Identities=10% Similarity=-0.058 Sum_probs=123.0
Q ss_pred chhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 005642 334 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 413 (686)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 413 (686)
...+..+...+.+.|++++|+..|++..+. .+.+...+..+..++.+.|++++|...++.+++..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------------- 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------
Confidence 345666667777777777777777777764 12255666677777777777777777776665432
Q ss_pred HHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 005642 414 YCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-IEHYSCMVDLFARAGCLNEA 492 (686)
Q Consensus 414 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 492 (686)
+.+...+..+..++...|++++|...|++..+. .|+ ...+...+....+......
T Consensus 69 --------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~- 124 (281)
T 2c2l_A 69 --------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKR- 124 (281)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHH-
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHH-
Confidence 125567778888888899999999999887632 231 1111111111111111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc-CCcchHHHHHHHHHhc
Q 005642 493 VNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS-GEWEKSSLIRDIMREK 568 (686)
Q Consensus 493 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 568 (686)
+.........++......+.. + ..|+.++|.+.++++++.+|++......+...+.+. +++++|.+++.++.+.
T Consensus 125 ~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 125 WNSIEERRIHQESELHSYLTR-L-IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111222333344444333333 2 268899999999999999998877777777777766 7899999999877653
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=3.3e-06 Score=77.17 Aligned_cols=156 Identities=12% Similarity=-0.006 Sum_probs=90.6
Q ss_pred ccCCHHHHHH---HHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCc-CHHHHHHHHHHHHccCChh
Q 005642 183 NCGKMNDARR---VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR----NGVLE-DASTLASVLSACSSLGFLE 254 (686)
Q Consensus 183 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~~ 254 (686)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44333333456677777778888888888888877655 11122 2345566666677777777
Q ss_pred hHHHHHHHHHHc----CCCc--hHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhh
Q 005642 255 HGKQVHGHACKV----GVID--DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 328 (686)
Q Consensus 255 ~a~~~~~~~~~~----g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 328 (686)
+|...+++..+. +..+ ....+..+...+...|++++|...+++. .++...
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------------l~~~~~ 139 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS------------------------LVYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH------------------------HHHHHh
Confidence 777777766553 1111 2345666777777777777777776632 222222
Q ss_pred CCCCC--chhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 329 MPNKS--LISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 329 ~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
...+. ..++..+...+...|++++|...+++..+
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22211 12345666667777777777776666543
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.42 E-value=8.4e-07 Score=73.53 Aligned_cols=94 Identities=14% Similarity=0.026 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATS 552 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 552 (686)
.+..++..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4566777888899999999999887 3445 6778888999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhc
Q 005642 553 GEWEKSSLIRDIMREK 568 (686)
Q Consensus 553 g~~~~a~~~~~~~~~~ 568 (686)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987764
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=1e-05 Score=78.95 Aligned_cols=127 Identities=12% Similarity=-0.025 Sum_probs=97.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----HHH
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHI--DPE--IEHYSCMVDLFARAGCLNEAVNLIEQMP----FEAD-----VGM 507 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~ 507 (686)
..+...+...|++++|+..+++..+...- .+. ..+++.++..|...|++++|...|++.. ..|+ ..+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 34555677888999999999988732111 111 4588899999999999999999998762 1222 257
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCC------CchhHHHHHHHHhhcCCcchH-HHHHHHHHh
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPE------NACAYIQLSSIFATSGEWEKS-SLIRDIMRE 567 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 567 (686)
+..+...|...|++++|+..++++++..++ ...+|..++.+|...|++++| ...+++..+
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 888999999999999999999999885432 256789999999999999999 777876654
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=1.7e-05 Score=75.07 Aligned_cols=129 Identities=6% Similarity=-0.070 Sum_probs=104.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----HHHHHHHHH
Q 005642 439 TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADV----GMWSSILRG 514 (686)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~li~~ 514 (686)
....+...+...|++++|.++|+.+. ...|+......+...+.+.|++++|+..|+.....|+. ..+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 34456677889999999999999876 23464337777788999999999999999977544433 367788889
Q ss_pred HHhcCChhHHHHHHHHHHccC--CC-CchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 515 CVAHGDKGLGRKVAERMIELD--PE-NACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 515 ~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
+...|++++|+..|+++.+-. |. .+.....++.++.+.|+.++|...++++.+..+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999998633 54 445788999999999999999999999998654
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=1.9e-06 Score=75.85 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=68.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666666666677777777766665 2333 4666777777777777777777777777777777777777777777
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|.+.+++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 77777777777777766543
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=3.2e-06 Score=71.63 Aligned_cols=98 Identities=8% Similarity=-0.057 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
+...+..++..+...|++++|...|++. ...| +...|..+...+...|++++|...++++++..|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5677888888888888888888888876 2334 5777888888999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|...+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999888754
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=2.7e-05 Score=73.76 Aligned_cols=128 Identities=9% Similarity=-0.019 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcc--cCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC-Cc----hhHHHHHHHHHh
Q 005642 274 VASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SL----ISWNSMIVGLSQ 346 (686)
Q Consensus 274 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~li~~~~~ 346 (686)
....+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+..... ++ ..+..+..++.+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 44556777888888888888888876 332225566666888888888888888866542 22 367778888999
Q ss_pred CCChhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 005642 347 NGSPIEALDLFCNMNKLDLRMD--KFSLASVISACANISSLELGEQVFARVTIIGLD 401 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (686)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++......
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 9999999999998875433254 235556667788899999999999988887543
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=5.1e-06 Score=67.90 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...+...|++++|...+++.... .| +...+..++..+.+.|++++|...+++. ...| +...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345556666666777777777777776632 23 5566666666777777777777766665 2233 4556666666
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
.+...|++++|...++++++..|+++..+..++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66677777777777777777777666655555544
No 144
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=9.2e-06 Score=69.69 Aligned_cols=112 Identities=12% Similarity=0.029 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWS 509 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 509 (686)
+...+..+...+...|++++|.+.|++.. ...|+ ...+..+..+|...|++++|...+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 45667777777777888888888888776 34454 566777777777777777777777765 2333 456667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
.+..++...|++++|...++++++..|++...+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777777777777777777666665555543
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1.5e-06 Score=72.69 Aligned_cols=93 Identities=6% Similarity=0.024 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch-------hHHHH
Q 005642 475 HYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC-------AYIQL 545 (686)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l 545 (686)
.+..++..+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4455666666666666666666665 2334 4556666777777777777777777777776665432 45566
Q ss_pred HHHHhhcCCcchHHHHHHHHHh
Q 005642 546 SSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6677777777777777776654
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=4e-06 Score=68.55 Aligned_cols=98 Identities=9% Similarity=0.140 Sum_probs=87.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
....+..++..+...|++++|...|++.. ..| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35677888999999999999999999873 334 6788899999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999887643
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=5e-06 Score=68.76 Aligned_cols=97 Identities=18% Similarity=0.322 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP-F-EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
...+..++..+...|++++|.+.++++. . +.+...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5778889999999999999999999873 3 3367889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhcC
Q 005642 551 TSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~~ 569 (686)
..|++++|..+++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999888754
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=3.8e-06 Score=70.06 Aligned_cols=110 Identities=10% Similarity=-0.080 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...+.+.|++++|+..|++..+ ..| +...+..+..++.+.|++++|+..+++. ...| +...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677788889999999999999999884 345 6889999999999999999999999987 3455 5778999999
Q ss_pred HHHhcCChhHHHHHHHHHHccC------CCCchhHHHHHHHH
Q 005642 514 GCVAHGDKGLGRKVAERMIELD------PENACAYIQLSSIF 549 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 549 (686)
++...|++++|...+++++++. |++..++..+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999999999 87777666666554
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.31 E-value=4.1e-06 Score=70.35 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=89.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
+...+..++..+.+.|++++|...|++. ...| +...+..+...+...|++++|+..++++++..|+++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 5778899999999999999999999987 4455 6788999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|.+.+++..+..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999888653
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=6.2e-06 Score=70.79 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
+...+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5778899999999999999999999987 56676 677888999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHHHHHHhcC
Q 005642 547 SIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.++...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999888753
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.31 E-value=5.8e-06 Score=75.39 Aligned_cols=130 Identities=10% Similarity=-0.005 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC--------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE--------------IEHYSCMVDLFARAGCLNEAVNLIEQM-PFE 502 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 502 (686)
..+..+...+...|++++|...|++..+...-.|+ ...+..+..+|.+.|++++|+..+++. ...
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45667777888999999999999998842222221 278888999999999999999999887 334
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHH-HHHHHHHh
Q 005642 503 A-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSS-LIRDIMRE 567 (686)
Q Consensus 503 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 567 (686)
| +...+..+..++...|++++|+..+++++++.|++..++..++.++...++.+++. ..++.+..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 57788889999999999999999999999999999999999999998888888877 45555544
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.31 E-value=3.1e-06 Score=72.97 Aligned_cols=103 Identities=10% Similarity=0.005 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSIL 512 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li 512 (686)
+...+..+...+...|++++|...|+.... ..| +...|..+..+|...|++++|+..|++. ...| +...|..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 345677788889999999999999999883 345 7889999999999999999999999987 3445 577888899
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
.++...|++++|+..+++++++.|+++..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999999987664
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.29 E-value=2.9e-06 Score=72.61 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILR 513 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 513 (686)
...+..+...+.+.|++++|...|++... ..| +...|..+..++.+.|++++|+..|++. ...| +...+..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 34566777788999999999999999883 345 7888999999999999999999999988 3444 5677888999
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCchhHHH
Q 005642 514 GCVAHGDKGLGRKVAERMIELDPENACAYIQ 544 (686)
Q Consensus 514 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 544 (686)
++...|++++|+..++++++..|+++.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 9999999999999999999999988765443
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.28 E-value=5.2e-06 Score=73.06 Aligned_cols=108 Identities=12% Similarity=0.038 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSIL 512 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li 512 (686)
+...+..+...+.+.|++++|++.|++..+ +.| +...+..+..+|.+.|++++|+..|++. ...| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456788888899999999999999999984 345 7889999999999999999999999988 3445 578899999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHH
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLS 546 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 546 (686)
.++...|++++|+..+++++++.|++...+...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999999888655444
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.27 E-value=5.2e-05 Score=73.94 Aligned_cols=169 Identities=8% Similarity=-0.031 Sum_probs=108.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-H----HHHHHHHHHHHccCChhhHHHHHHHHHHcCC---Cc--hHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED-A----STLASVLSACSSLGFLEHGKQVHGHACKVGV---ID--DVI 273 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~ 273 (686)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+.+..+... .+ ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567777888888888888888776432111 1 1223344455677788888888877765321 11 144
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhCCCh
Q 005642 274 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSP 350 (686)
Q Consensus 274 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 350 (686)
+++.+...|...|++++|...|++ |.++++..... ...++..+...|...|++
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~k------------------------al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQ------------------------ILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------------------------HHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 677788888888888888887773 33333333321 124677778888888888
Q ss_pred hhHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHccCChHHH-HHHHHHHH
Q 005642 351 IEALDLFCNMNKLD----LRM-DKFSLASVISACANISSLELG-EQVFARVT 396 (686)
Q Consensus 351 ~~A~~~~~~m~~~g----~~p-~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~ 396 (686)
++|+..+++..+.. ... -..+|..+..++.+.|++++| ...++...
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 88888887765431 111 145677777888888888888 66676544
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.27 E-value=2.9e-06 Score=72.47 Aligned_cols=63 Identities=5% Similarity=-0.039 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcc-------CCCCchhH----HHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIEL-------DPENACAY----IQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|+..+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888889999999999999999999998 99999999 99999999999999999999988774
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.23 E-value=8e-06 Score=68.15 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF 549 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 549 (686)
+...+..++..+...|++++|...|++.. ..| +...+..+...+...|++++|...++++++..|+++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 46778889999999999999999999873 334 6788999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhcC
Q 005642 550 ATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~ 569 (686)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999888754
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.22 E-value=6.7e-05 Score=68.25 Aligned_cols=156 Identities=10% Similarity=-0.008 Sum_probs=95.6
Q ss_pred hCCCHHHHHH---HHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChH
Q 005642 315 SCGRIEDAKH---IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLE 386 (686)
Q Consensus 315 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~ 386 (686)
..|++++|.+ .+..-+......+..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4556666666 444433234466777778888888888888888777652 1122 2345667777788888888
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005642 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKP--TIITFTAILSACDHCGLVKEGQKWFDAMK 464 (686)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (686)
+|...+.+..+. ++ ..+..| ....+..+...+...|++++|...+++..
T Consensus 84 ~A~~~~~~al~~--------------------------~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEEREL--------------------------LA---SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHH--------------------------HH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------------------HH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888888765432 11 111111 23456777788888999999999998876
Q ss_pred HhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 465 WQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 465 ~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
+...-..+ ..++..+..++...|++++|.+.+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 32111111 234566667777777777777666653
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=5.4e-06 Score=80.34 Aligned_cols=96 Identities=8% Similarity=-0.116 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 005642 202 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281 (686)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 281 (686)
...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++.+++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666666531 2245556666666666666666666666666653 2345566666666
Q ss_pred HHhcCChhHHHHHHHhcc
Q 005642 282 YSKRGMPSDACKLFSELK 299 (686)
Q Consensus 282 ~~~~g~~~~A~~~~~~~~ 299 (686)
|...|++++|...|++..
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 666777777766666554
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.19 E-value=1.1e-05 Score=72.02 Aligned_cols=103 Identities=5% Similarity=0.072 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH-HHhcCCh--HHHHHHHHhC-CCCC-CHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDL-FARAGCL--NEAVNLIEQM-PFEA-DVGMWS 509 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~-~~~p-~~~~~~ 509 (686)
+...+..+...+...|++++|...|++..+. .| +...+..++.+ +...|++ ++|...++++ ...| +...+.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence 6678888899999999999999999998842 34 67788888888 7889998 9999999987 3445 577888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCchh
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIELDPENACA 541 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 541 (686)
.+...+...|++++|...++++++..|+++..
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 89999999999999999999999999987653
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.19 E-value=2.8e-05 Score=68.11 Aligned_cols=94 Identities=7% Similarity=-0.043 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 282 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 282 (686)
..|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...++...+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555555666666666666666655531 2244555555555556666666666666655543 23444555555555
Q ss_pred HhcCChhHHHHHHHhc
Q 005642 283 SKRGMPSDACKLFSEL 298 (686)
Q Consensus 283 ~~~g~~~~A~~~~~~~ 298 (686)
...|++++|...|++.
T Consensus 92 ~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 92 MALGKFRAALRDYETV 107 (166)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 5666666665555543
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=5.3e-06 Score=69.32 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCC----HHH
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-F----EAD----VGM 507 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~ 507 (686)
.++..+...+.+.|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.+++.. + .++ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 5677888999999999999999999983 456 68899999999999999999999998872 2 222 246
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
|..+..++...|++++|+..++++++..|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 778888999999999999999999998884
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=8.6e-06 Score=68.92 Aligned_cols=100 Identities=9% Similarity=-0.032 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005642 435 PTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSI 511 (686)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 511 (686)
.+...+..+...+...|++++|...|+.... ..| +...+..++.++...|++++|...+++. ...| +...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 4678888999999999999999999999884 234 6889999999999999999999999987 3444 57889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
..++...|++++|+..++++++..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999998887
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=5.5e-06 Score=69.28 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=52.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---chhHHHHHHHHh
Q 005642 479 MVDLFARAGCLNEAVNLIEQMP-FEAD-V---GMWSSILRGCVAHGDKGLGRKVAERMIELDPEN---ACAYIQLSSIFA 550 (686)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 550 (686)
++..+...|++++|...|++.. ..|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 4444555556666655555541 1222 1 345555566666666666666666666666665 555666666666
Q ss_pred hcCCcchHHHHHHHHHhc
Q 005642 551 TSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~ 568 (686)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666553
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=1.6e-05 Score=82.95 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-------------IEHYSCMVDLFARAGCLNEAVNLIEQM-PFE 502 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 502 (686)
...+..+...+.+.|++++|+..|++..+.....++ ...|..+..+|.+.|++++|+..++++ ...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 456777888899999999999999998842221111 578999999999999999999999987 344
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH-HHHHHHhc
Q 005642 503 A-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL-IRDIMREK 568 (686)
Q Consensus 503 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~ 568 (686)
| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+++++.+ .++.|..+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 578899999999999999999999999999999999999999999999999998876 45655543
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.14 E-value=0.00057 Score=66.96 Aligned_cols=122 Identities=11% Similarity=-0.008 Sum_probs=69.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCCh---
Q 005642 421 ALALFNEMRNTGVKPTIITFTAILSACDHCGL-------VKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCL--- 489 (686)
Q Consensus 421 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-------~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--- 489 (686)
+++.++++.+..+. |...|+.....+.+.+. ++++++.++++.. ..| |...|+.+-..+.+.|+.
T Consensus 186 ELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 186 ELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCccc
Confidence 44444555544333 66666666666666654 6788888888773 456 677887777777776654
Q ss_pred -----------------HHHHHHHHhCC-C-------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-ccCCCCchhHH
Q 005642 490 -----------------NEAVNLIEQMP-F-------EADVGMWSSILRGCVAHGDKGLGRKVAERMI-ELDPENACAYI 543 (686)
Q Consensus 490 -----------------~~A~~~~~~~~-~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~ 543 (686)
.+..++..++. . .+....+..+++.|...|+.++|.++++.+. +.+|-....|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 23333333331 1 2345556666666666676677777776665 45665554444
Q ss_pred HHH
Q 005642 544 QLS 546 (686)
Q Consensus 544 ~l~ 546 (686)
-.+
T Consensus 342 ~~~ 344 (349)
T 3q7a_A 342 FRR 344 (349)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.13 E-value=6.7e-06 Score=68.01 Aligned_cols=97 Identities=9% Similarity=0.013 Sum_probs=80.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005642 440 FTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCV 516 (686)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~ 516 (686)
+..+...+.+.|++++|+..|++..+ ..| +...+..+..++...|++++|+..|++. ...| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45566778899999999999999984 345 7889999999999999999999999987 3556 5778899999999
Q ss_pred hcCChhHHHHHHHHHHccCCCCc
Q 005642 517 AHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 517 ~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
..|++++|+..++++++.+|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999999764
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=6e-06 Score=86.58 Aligned_cols=118 Identities=10% Similarity=0.118 Sum_probs=100.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG 519 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g 519 (686)
+...+.+.|++++|.+.+++..+ ..| +...+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456788999999999999984 345 6889999999999999999999999988 3555 5788999999999999
Q ss_pred ChhHHHHHHHHHHccCCCCchhHHHHHHH--HhhcCCcchHHHHHH
Q 005642 520 DKGLGRKVAERMIELDPENACAYIQLSSI--FATSGEWEKSSLIRD 563 (686)
Q Consensus 520 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 563 (686)
++++|+..++++++..|++..++..++.+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999888 888999999999987
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=8.8e-06 Score=71.37 Aligned_cols=64 Identities=6% Similarity=0.123 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 505 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4568888888899999999999999999999999999999999999999999999999887764
No 170
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=1.5e-05 Score=80.32 Aligned_cols=123 Identities=8% Similarity=-0.003 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhc-------------CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQY-------------HIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFE 502 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 502 (686)
..+..+...+.+.|++++|++.|++..+.. ...| +...|..+..+|.+.|++++|++.+++. ...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 456777788889999999999999887410 1233 4677888888889999999999988887 455
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 503 A-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 503 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
| +...|..+..++...|++++|+..+++++++.|++..++..+..++...++++++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 467788888888899999999999999999999888888888888888887777765
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=1.3e-05 Score=66.84 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------chhHHHHH
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN-------ACAYIQLS 546 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~ 546 (686)
+..++..+...|++++|...|++.. .+.+...+..+...+...|++++|...++++++..|++ ..++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3334444444444444444444331 11133444444444555555555555555555544433 44455555
Q ss_pred HHHhhcCCcchHHHHHHHHHh
Q 005642 547 SIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.++...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555554444
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=2.8e-06 Score=69.81 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=58.7
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 486 AGCLNEAVNLIEQM-PF---EA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 486 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++..|+++.++..++.++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666677766665 23 24 345577777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhc
Q 005642 561 IRDIMREK 568 (686)
Q Consensus 561 ~~~~~~~~ 568 (686)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777654
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=3e-05 Score=64.64 Aligned_cols=105 Identities=8% Similarity=0.045 Sum_probs=84.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-Ch---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHH
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDP-EI---EHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD----VGMWSSI 511 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 511 (686)
..+...+...|++++|...|+.+.+. .| +. ..+..++.++.+.|++++|...|++. ...|+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 34556778899999999999999843 24 33 58888999999999999999999987 23343 5668888
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSI 548 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 548 (686)
..++...|++++|...++++++..|+++........+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 9999999999999999999999999887655544443
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.07 E-value=6.5e-06 Score=82.12 Aligned_cols=126 Identities=7% Similarity=-0.052 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh------------------HHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIE------------------HYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
..+..+...+.+.|++++|...|++... +.|+.. .|..+..+|.+.|++++|+..+++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777788889999999999998773 334332 4444444455555555555544444
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHH-hhcCCcchHHHHHHHHH
Q 005642 500 -PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIF-ATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 500 -~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~ 566 (686)
...| +...|..+..++...|++++|+..+++++++.|++..++..+..+. ...+..+.+...+++|.
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222 3444444444455555555555555555555554444444444442 22334444444444443
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=1.2e-05 Score=66.98 Aligned_cols=112 Identities=8% Similarity=-0.008 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCC----HHH
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMP-F----EAD----VGM 507 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~ 507 (686)
...+..+...+...|++++|...|++..+. .+.+...+..++..+...|++++|...+++.. . .++ ...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 356777888899999999999999998843 23368889999999999999999999999872 2 223 677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhh
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFAT 551 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 551 (686)
+..+...+...|++++|...++++++..| ++.....+..+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 88899999999999999999999999988 56666666665544
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.06 E-value=1.9e-05 Score=63.76 Aligned_cols=102 Identities=10% Similarity=-0.029 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHH
Q 005642 436 TIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA---DVGMWSSI 511 (686)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l 511 (686)
+...+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++. ...| +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3456677788899999999999999998842 2236788999999999999999999999987 3444 47889999
Q ss_pred HHHHHhc-CChhHHHHHHHHHHccCCCCc
Q 005642 512 LRGCVAH-GDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 512 i~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 539 (686)
...+... |++++|.+.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999999764
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=1.3e-05 Score=69.85 Aligned_cols=131 Identities=10% Similarity=0.006 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----H
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQMP----FEAD----V 505 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~ 505 (686)
.++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++.. ..++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777888889999999999999997642211122 2578889999999999999999998862 1112 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCC------CCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIELDP------ENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
..+..+...+...|++++|...++++++..+ ....++..++.++...|++++|.+.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5677888889999999999999999987532 12456888999999999999999999987753
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.04 E-value=6.5e-06 Score=82.08 Aligned_cols=116 Identities=6% Similarity=0.002 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHH
Q 005642 451 GLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEAD----------------VGMWSSIL 512 (686)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~li 512 (686)
+++++|.+.++.... ..| +...+..+...+.+.|++++|...|++. ...|+ ...|..+.
T Consensus 127 ~~~~~A~~~~~~a~~---~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE---EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 445555555554431 234 4678889999999999999999999987 33443 47899999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.++.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+..
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999888753
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.03 E-value=0.00035 Score=68.47 Aligned_cols=216 Identities=10% Similarity=0.037 Sum_probs=132.4
Q ss_pred HhCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-h---
Q 005642 345 SQNGSPIEALDLFCNMNKLDLRMDK-FSLASVISACANIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC-G--- 418 (686)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~--- 418 (686)
...+..++|+++++++... .|+. ..++.--..+...| .++++++.++.+++.. +.+..+|+.--..+.+. +
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 3444455677777777663 3433 33444444444555 4677777777666654 33444444443333333 3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCC-
Q 005642 419 YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVK--------EGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGC- 488 (686)
Q Consensus 419 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~- 488 (686)
++++++++++.+...+ |..+|+.-...+.+.|.++ ++++.++++.+ ..| |...|+....++.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcccc
Confidence 2677777777665433 5666665544444444444 88888888883 345 77888888888888776
Q ss_pred ------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHccC-----
Q 005642 489 ------LNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDK--------------------GLGRKVAERMIELD----- 535 (686)
Q Consensus 489 ------~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~----- 535 (686)
++++++.++++ ...| |...|+.+-..+.+.|+. .........+....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 67888888776 3445 677788777777766654 22233333333322
Q ss_pred -CCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 536 -PENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 536 -p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+..+.++..++.+|.+.|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45667788889999999999999999998864
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.03 E-value=0.0011 Score=64.73 Aligned_cols=177 Identities=8% Similarity=0.015 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhch----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 005642 386 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG----YDALALFNEMRNTGVKPTIITFTAILSACDHCGL-VKEGQKWF 460 (686)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~ 460 (686)
+++..+++.+.... +-+..+|+.-...+.+.+ ++++.+++++.+...+ |..+|+.-...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444444432 223333333333333333 1455555555554433 55555555555555565 46777777
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----
Q 005642 461 DAMKWQYHIDP-EIEHYSCMVDLFARA--------------GCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAH----- 518 (686)
Q Consensus 461 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~----- 518 (686)
+.+.+ ..| |...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 77663 234 555666555555544 3456666666665 2334 455565444444433
Q ss_pred ------CChhHHHHHHHHHHccCCCCchhHHHHHHHH---hhcCCcchHHHHHHHHHh
Q 005642 519 ------GDKGLGRKVAERMIELDPENACAYIQLSSIF---ATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 519 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~ 567 (686)
+.++++++.++++++..|++..++..++... ...|..++...++.++++
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3467777778888888887754444433322 235666677777777765
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=8.3e-06 Score=69.59 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CC--
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-------------IEHYSCMVDLFARAGCLNEAVNLIEQM-PF-- 501 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 501 (686)
..+......+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 4456667778899999999999999884 3343 238999999999999999999999877 35
Q ss_pred -----CCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 502 -----EAD-VGMW----SSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 502 -----~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
.|+ ...| .....++...|++++|+..|++++++.|++..++..+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 886 5568 8999999999999999999999999999887754433
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=1.1e-05 Score=70.71 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc------CC---------CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 005642 437 IITFTAILSACDHCGLVKEGQKWFDAMKWQY------HI---------DP-EIEHYSCMVDLFARAGCLNEAVNLIEQM- 499 (686)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 499 (686)
...+......+.+.|++++|+..|++..... .- .| +...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3567777888999999999999999987420 00 22 3468899999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-hhHHHHHHHHh
Q 005642 500 PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA-CAYIQLSSIFA 550 (686)
Q Consensus 500 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~ 550 (686)
...| +...|..+..++...|++++|...++++++++|+++ .+...+..+..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3455 578899999999999999999999999999999887 44444444433
No 183
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=1.3e-05 Score=73.03 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----------------HHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED----------------ASTLASVLSACSSLGFLEHGKQVHGHACKVG 267 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 267 (686)
.+..+...+...|++++|+..|++..+.. +.+ ...+..+..++...|++++|...++..++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45555555566666666666666655531 111 1344444455555555555555555555542
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 268 VIDDVIVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
+.+...+..+..+|...|++++|...|++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 224444555555555555555555555543
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=1.1e-05 Score=66.20 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=74.1
Q ss_pred ccCCHHHHHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 005642 449 HCGLVKEGQKWFDAMKWQYHI-DP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLG 524 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A 524 (686)
..|++++|+..|++..+ .+. .| +...+..++.+|...|++++|...|++. ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 45888999999999882 211 24 5778999999999999999999999988 3445 577888999999999999999
Q ss_pred HHHHHHHHccCCCCchhH
Q 005642 525 RKVAERMIELDPENACAY 542 (686)
Q Consensus 525 ~~~~~~~~~~~p~~~~~~ 542 (686)
+..++++++..|+++...
T Consensus 81 ~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHH
Confidence 999999999999886643
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00034 Score=72.36 Aligned_cols=197 Identities=7% Similarity=-0.098 Sum_probs=116.1
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-cch
Q 005642 342 VGLSQNGSPIEALDLFCNMNKLDLRMD----------------KFSLASVISACANISSLELGEQVFARVTIIGLD-SDQ 404 (686)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 404 (686)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+.-.. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345556667777776666665422111 123556677777777777777777655432100 000
Q ss_pred hHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCCC-ChhHHHHHH
Q 005642 405 IISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW---QYHIDP-EIEHYSCMV 480 (686)
Q Consensus 405 ~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~p-~~~~~~~l~ 480 (686)
.. ...+.+.+...+...|+.++|.++++.... ..+..+ ...++..++
T Consensus 92 ~~-----------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la 142 (434)
T 4b4t_Q 92 KT-----------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA 142 (434)
T ss_dssp HH-----------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred HH-----------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 00 011223333344556777777777776542 122222 245677778
Q ss_pred HHHHhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC---CC----chhHHHH
Q 005642 481 DLFARAGCLNEAVNLIEQMP-------FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDP---EN----ACAYIQL 545 (686)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~~----~~~~~~l 545 (686)
..|...|++++|..+++++. .+| ....+..++..|...|++++|...+++++...| +. ...+..+
T Consensus 143 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 222 (434)
T 4b4t_Q 143 TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMS 222 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 88888888888888777651 112 245577777788888888888888887776432 11 2345566
Q ss_pred HHHHhhcCCcchHHHHHHHHHh
Q 005642 546 SSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
+..+...|++++|...+.+..+
T Consensus 223 g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 223 GILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 6677778888888887766654
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.93 E-value=0.00062 Score=66.42 Aligned_cols=205 Identities=11% Similarity=-0.009 Sum_probs=111.1
Q ss_pred HHHHHHHhhCCC---CCchhHHHHHHHHHhCCC--hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHH
Q 005642 320 EDAKHIFRTMPN---KSLISWNSMIVGLSQNGS--PIEALDLFCNMNKLDLRMDKFSLASVISACANISS-LELGEQVFA 393 (686)
Q Consensus 320 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~ 393 (686)
++++.+++.+.. ++..+|+.-.-.+.+.++ +++++.+++++.+.. +-|...|+.-.-.+...|. ++++.+.+.
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 344444444432 344556655555555553 567777777776652 3344555544444455555 366666666
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhchhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-C
Q 005642 394 RVTIIGLDSDQIISTSLVDFYCKCGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDP-E 472 (686)
Q Consensus 394 ~~~~~~~~~~~~~~~~li~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~ 472 (686)
.+++.. +.|...|+.....+.+.. .. .+... ..-...+.++++++.+..... ..| |
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~-----------~~--~~~~~------~~~~~~~~~~eEle~~~~ai~---~~P~d 226 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLH-----------PQ--PDSGP------QGRLPENVLLKELELVQNAFF---TDPND 226 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHS-----------CC--C------------CCCHHHHHHHHHHHHHHHH---HSTTC
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhh-----------hc--ccccc------ccccchHHHHHHHHHHHHHHH---hCCCC
Confidence 666554 223333332221111110 00 00000 000011446777777777762 345 6
Q ss_pred hhHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHccC
Q 005642 473 IEHYSCMVDLFARA-----------GCLNEAVNLIEQM-PFEADVGMWSSILRG-----CVAHGDKGLGRKVAERMIELD 535 (686)
Q Consensus 473 ~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~~ 535 (686)
...|+.+-..+.+. +.++++++.++++ ...||. .|..+..+ ....|..++....+.++.+++
T Consensus 227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 66776665555554 4577888888877 456654 34322222 124577888999999999999
Q ss_pred CCCchhHHHHHHHH
Q 005642 536 PENACAYIQLSSIF 549 (686)
Q Consensus 536 p~~~~~~~~l~~~~ 549 (686)
|....-|..+..-+
T Consensus 306 p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 306 PMRAAYLDDLRSKF 319 (331)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 98888777776544
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.0007 Score=72.23 Aligned_cols=134 Identities=8% Similarity=-0.001 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC-ChHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCG--LVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG-CLNEAVNL 495 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~ 495 (686)
++++.++++.+...+ +..+|..-...+.+.+ +++++++.++++.+ ..| +...|+.-..++.+.| .++++++.
T Consensus 91 ~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 91 AELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 455555555554444 6777877777788888 77999999999984 345 7888998888889999 89999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcch
Q 005642 496 IEQM-PFEA-DVGMWSSILRGCVAH--------------GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEK 557 (686)
Q Consensus 496 ~~~~-~~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 557 (686)
++++ ...| +...|+.....+... +.++++++.+.+++..+|++..+|..+.+++.+.+++++
T Consensus 167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 9988 4555 677888888877663 557999999999999999999999999999999998666
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=3.1e-05 Score=80.59 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=101.7
Q ss_pred HHhccCCHHHHHHHHHHHHHhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 005642 446 ACDHCGLVKEGQKWFDAMKWQY--HIDP----EIEHYSCMVDLFARAGCLNEAVNLIEQM---------PFEAD-VGMWS 509 (686)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 509 (686)
.+...|++++|+.++++..+.. -+.| ...+++.|+.+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999998876422 1223 2568999999999999999999999876 13344 45689
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHc-----cCCCCchh---HHHHHHHHhhcCCcchHHHHHHHHHhcCCCCCC
Q 005642 510 SILRGCVAHGDKGLGRKVAERMIE-----LDPENACA---YIQLSSIFATSGEWEKSSLIRDIMREKHVGKLP 574 (686)
Q Consensus 510 ~li~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 574 (686)
.|...|...|++++|+.+++++++ +.|+++.+ ...+..++.+.+++++|+..++++++...+..|
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998 56776544 456778888999999999999999986654444
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=4.2e-05 Score=61.69 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=70.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------chhHH
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN------ACAYI 543 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 543 (686)
+...+..++..+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556677777788888888888888776 2334 56778888888888999999999999999988887 66777
Q ss_pred HHHHHHhhcCCcchHHHHHH
Q 005642 544 QLSSIFATSGEWEKSSLIRD 563 (686)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~ 563 (686)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77888877777777765544
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.0054 Score=63.15 Aligned_cols=164 Identities=5% Similarity=-0.025 Sum_probs=88.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcC----------------HHHHHHHHHHHHccCChhhHHHHHHHHHHcC-CCchH
Q 005642 210 SGYISNNEDTEALLLFHKMRRNGVLED----------------ASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDV 272 (686)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 272 (686)
..+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+.+..+.+.- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777776665321110 1124445555555555555555555444321 00111
Q ss_pred ----HHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCC--CchhHHHHHHHHHh
Q 005642 273 ----IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQ 346 (686)
Q Consensus 273 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~ 346 (686)
.+.+.+...+...|+++.|..++... ..+....... -..++..+...|..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKS------------------------IEFAKREKRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHH------------------------HHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------------------HHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 12223333334455566666555422 1222222111 12356677788888
Q ss_pred CCChhhHHHHHHHHHHCCC----CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005642 347 NGSPIEALDLFCNMNKLDL----RMD-KFSLASVISACANISSLELGEQVFARVTI 397 (686)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~----~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 397 (686)
.|++++|..+++++...-. +|. ..++..++..|...|++++|..++.....
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 8888888888877654311 121 34677778888888999999888887654
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.78 E-value=8.6e-05 Score=58.71 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57778889999999999999999999999999999999999999999999999999999988764
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.77 E-value=3.3e-05 Score=77.00 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH------------------HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVG------------------MWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------------------~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...+..+...+.+.|++++|...|++. ...|+.. .|..+..++.+.|++++|+..++++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888889999999999999986 3455543 788899999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 534 LDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 534 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
++|++..+|..++.+|...|++++|...+++..+
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996654
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.77 E-value=0.00025 Score=61.40 Aligned_cols=94 Identities=11% Similarity=-0.025 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHccCChhhHHHHHHHHHHcC----CCc-hH
Q 005642 203 VMWNSMISGYISNNEDTEALLLFHKMRRNGVL-ED----ASTLASVLSACSSLGFLEHGKQVHGHACKVG----VID-DV 272 (686)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~-~~ 272 (686)
.++..+...+...|++++|+..+++..+..-. ++ ..++..+...+...|++++|...++...+.. .++ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666777777777777777777776542100 11 1245555556666666666666666655421 000 13
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH
Q 005642 273 IVASALLDTYSKRGMPSDACKLFS 296 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~ 296 (686)
..+..+...+...|++++|...++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~ 113 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHL 113 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345555666666666666666655
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.76 E-value=3.4e-05 Score=80.49 Aligned_cols=116 Identities=8% Similarity=0.019 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----------------HHHHHHHH
Q 005642 451 GLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP-FEAD----------------VGMWSSIL 512 (686)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----------------~~~~~~li 512 (686)
+++++|.+.|+.... ..| ....+..+...+.+.|++++|...|++.. ..|+ ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~---~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTK---EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHH---HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 344455555544331 123 45678889999999999999999999872 2332 57899999
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 513 RGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...++++.+..
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999888643
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.75 E-value=1.9e-05 Score=67.22 Aligned_cols=49 Identities=8% Similarity=0.111 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcC-----------CcchHHHHHHHHHhcC
Q 005642 521 KGLGRKVAERMIELDPENACAYIQLSSIFATSG-----------EWEKSSLIRDIMREKH 569 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~ 569 (686)
+++|+..++++++++|++..+|..++.+|...| ++++|++.+++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999875 8999999999888754
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.74 E-value=7.6e-05 Score=60.79 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=62.1
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 491 EAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 491 ~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+|++.|++. ...| +...|..+...+...|++++|+..++++++..|++..+|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3344 56778888888888899999999999999888988888888999999999999999988877764
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.73 E-value=0.00014 Score=56.03 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455666666677777777777777665 2223 45667777777888888888888888888888888777777777776
Q ss_pred hcC
Q 005642 551 TSG 553 (686)
Q Consensus 551 ~~g 553 (686)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.67 E-value=0.0002 Score=55.39 Aligned_cols=70 Identities=9% Similarity=-0.004 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCCC
Q 005642 502 EADVGMWSSILRGCVAHGD---KGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKHVG 571 (686)
Q Consensus 502 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (686)
++++..+..+..++...++ .++|...++++++.+|+++.+...++..+.+.|+|++|+.+|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3467788888888765554 799999999999999999999999999999999999999999999986554
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.66 E-value=0.00012 Score=73.77 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-----------------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 005642 474 EHYSCMVDLFARAGCLNEAVNLIEQMP-----------------FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELD 535 (686)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 535 (686)
..+..+...+.+.|++++|++.|++.. ..| +...|..+..++.+.|++++|+..++++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346778889999999999999998762 233 35678889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 536 PENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 536 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999888753
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.57 E-value=0.00057 Score=57.66 Aligned_cols=112 Identities=4% Similarity=-0.188 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 005642 451 GLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEADVGMWSSILRGCVA----HGDKGLGRK 526 (686)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~ 526 (686)
+++++|.++|++..+ .+ .|+.. |...|...+.+++|.+.|++....-+...+..+...|.. .++.++|..
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 467788888888873 34 23332 777777777888888888887434567777888888877 788999999
Q ss_pred HHHHHHccCCCCchhHHHHHHHHhh----cCCcchHHHHHHHHHhcCC
Q 005642 527 VAERMIELDPENACAYIQLSSIFAT----SGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 527 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 570 (686)
.++++.+. .++.++..|+.+|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99998875 467788899999988 8899999999998887653
No 201
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.57 E-value=7.2e-05 Score=78.35 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=82.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCc
Q 005642 478 CMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEW 555 (686)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 555 (686)
.+...+.+.|++++|.+.|++. ...| +...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3445567889999999999987 3455 5888999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcC
Q 005642 556 EKSSLIRDIMREKH 569 (686)
Q Consensus 556 ~~a~~~~~~~~~~~ 569 (686)
++|.+.+++..+..
T Consensus 91 ~eA~~~~~~al~~~ 104 (477)
T 1wao_1 91 RAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988754
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.56 E-value=5.8e-05 Score=64.24 Aligned_cols=110 Identities=9% Similarity=0.056 Sum_probs=79.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCCh----------HHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005642 449 HCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCL----------NEAVNLIEQM-PFEA-DVGMWSSILRGC 515 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~-~~~p-~~~~~~~li~~~ 515 (686)
+.+.+++|.+.++...+ +.| +...|..+..++...|++ ++|+..|++. .+.| +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 44567888888888773 345 678888888888887664 5888888887 4666 467788888888
Q ss_pred Hhc-----------CChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 516 VAH-----------GDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 516 ~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
... |++++|+..|+++++++|++..... ... ..++|.+++-.+...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~-al~------~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK-SLE------MTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHH------HHHTHHHHHHHHHHS
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH-HHH------HHHhCHhccCccccc
Confidence 876 4899999999999999998754222 222 234555555555444
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.54 E-value=0.0011 Score=70.67 Aligned_cols=147 Identities=10% Similarity=0.065 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcC-
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGL----------VKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAG- 487 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g- 487 (686)
+|++.++++...+.. +..+|+.--..+...|+ ++++++.++.+.+ ..| +..+|..-..++.+.|
T Consensus 47 eal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 47 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHccc
Confidence 677777777766433 45566665555655666 8999999999984 345 7888999999999999
Q ss_pred -ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCCCCchhHHHHHHHHhhc-----------
Q 005642 488 -CLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHG-DKGLGRKVAERMIELDPENACAYIQLSSIFATS----------- 552 (686)
Q Consensus 488 -~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----------- 552 (686)
+++++++.++++ ...| +...|+.-...+...| ..+++++.++++++.+|.+..+|...+.++...
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 679999999998 3444 6888999888888888 899999999999999999999999999998874
Q ss_pred ---CCcchHHHHHHHHHhcCC
Q 005642 553 ---GEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 553 ---g~~~~a~~~~~~~~~~~~ 570 (686)
++++++.+++++..+..+
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCS
T ss_pred ccHHHHHHHHHHHHHHHhhCC
Confidence 567889998887776543
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00026 Score=56.81 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 503 ADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 503 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
++...|..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3466788899999999999999999999999999999999999999999999999999999888643
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.37 E-value=0.0013 Score=68.43 Aligned_cols=127 Identities=10% Similarity=-0.110 Sum_probs=76.4
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCc----CHHHHHHHHHHHHccCChhhHHHHHHHHHHc-----C-CCch-HHHHHH
Q 005642 212 YISNNEDTEALLLFHKMRRN---GVLE----DASTLASVLSACSSLGFLEHGKQVHGHACKV-----G-VIDD-VIVASA 277 (686)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~-~~~~~~ 277 (686)
+..+|++++|+.++++.++. -+.| ...+++.+...|...|++++|..++++.++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44677788888777776542 1222 1335666777777777777777777766542 2 1222 335667
Q ss_pred HHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCc----hhHHHHHHHHHhCCChhhH
Q 005642 278 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEA 353 (686)
Q Consensus 278 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A 353 (686)
|...|...|++++|..+++ +|+++++...-++- .+.+.+..++...+.+++|
T Consensus 399 La~~~~~~G~~~eA~~~~~------------------------~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMIC------------------------KAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766 44445544444332 2344555566666777777
Q ss_pred HHHHHHHHH
Q 005642 354 LDLFCNMNK 362 (686)
Q Consensus 354 ~~~~~~m~~ 362 (686)
..+|..+.+
T Consensus 455 e~~~~~~~~ 463 (490)
T 3n71_A 455 EFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.33 E-value=0.00078 Score=51.61 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 505 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 55688888899999999999999999999999999999999999999999999999999888753
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.27 E-value=0.001 Score=53.80 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005642 455 EGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERM 531 (686)
Q Consensus 455 ~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 531 (686)
+|++.|++.. ...| +...+..++..|...|++++|...|++. ...| +...|..+..++...|++++|...++++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666666 3345 5777888888888888888888888876 2334 4667888888888888888888888888
Q ss_pred HccCCC
Q 005642 532 IELDPE 537 (686)
Q Consensus 532 ~~~~p~ 537 (686)
++..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 887764
No 208
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.18 E-value=0.00025 Score=70.52 Aligned_cols=238 Identities=11% Similarity=0.144 Sum_probs=161.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005642 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 151 (686)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~ 151 (686)
+..|..|..+....+...+|++.|-+. .|...|..++.++.+. +..+.-...+...++. ..++.+=+.|+-+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~--~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTS--GNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTS--SCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 345888888888888888888877444 4445566777777766 4555555666555554 334455567888888
Q ss_pred hcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCC------------------------CChhhHHH
Q 005642 152 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD------------------------TSSVMWNS 207 (686)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~ 207 (686)
+.+++.+-++++. .||+.-...+.+-|...|.++.|.-+|..+.. .++.+|-.
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 8888765433322 36666667777778888888888777765431 35778999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 005642 208 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287 (686)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 287 (686)
+-.+|...+.+.-|.-.--.++- .||. ...++..|...|.+++-..+++.-+... ......++.|.-.|+|- +
T Consensus 205 V~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-C
T ss_pred HHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-C
Confidence 99999999988877655444442 2222 2346677888899998888888776432 45677888888888876 4
Q ss_pred hhHHHHHHHhcc----cC-------CchhHHHHHHHHHhCCCHHHHHHH
Q 005642 288 PSDACKLFSELK----VY-------DTILLNTMITVYSSCGRIEDAKHI 325 (686)
Q Consensus 288 ~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~ 325 (686)
+++-.+.++-.- -| ....|.-++-.|.+-.+++.|...
T Consensus 278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 555555544332 11 455788888888888888877543
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.16 E-value=0.00052 Score=53.81 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=37.7
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhH
Q 005642 480 VDLFARAGCLNEAVNLIEQM-PFEA-DVG-MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAY 542 (686)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 542 (686)
+..+.+.|++++|...|++. ...| +.. .|..+..++...|++++|+..++++++.+|++..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455566666666666655 2233 344 566666666666666777766776666666665544
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0006 Score=69.65 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCC---CchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 506 GMWSSILRGCVAHGDKGLGRKVAERMIE-----LDPE---NACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 506 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.+++.+..+|...|++++|+.+++++++ +.|+ ....++.|+.+|..+|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3455666666666666666666666655 2233 334456666666666666666666665543
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.98 E-value=0.0017 Score=50.72 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=54.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCch-hHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENAC-AYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
....+...|++++|+..++++++..|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778899999999999999999999999 99999999999999999999999888754
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0027 Score=64.92 Aligned_cols=85 Identities=6% Similarity=0.094 Sum_probs=53.8
Q ss_pred HHhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCC---CchhHHH
Q 005642 483 FARAGCLNEAVNLIEQMP------FEAD----VGMWSSILRGCVAHGDKGLGRKVAERMIE-----LDPE---NACAYIQ 544 (686)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~---~~~~~~~ 544 (686)
+.+.|++++|..++++.- +.|+ ..+++.+...|...|++++|+.+++++++ ..|+ ....+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445666666666665540 2222 34566777777777777777777777766 2333 3345667
Q ss_pred HHHHHhhcCCcchHHHHHHHHHh
Q 005642 545 LSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
|+.+|..+|++++|..++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777776654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.0051 Score=62.78 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=74.6
Q ss_pred ccCCHHHHHHHHHHHHHh--cCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 005642 449 HCGLVKEGQKWFDAMKWQ--YHIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQM---------PFEAD-VGMWSSIL 512 (686)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~--~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~li 512 (686)
..|++++|+.++++..+. .-+.|+ ..+++.|..+|...|++++|..++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999887642 123332 568899999999999999999999887 13444 45599999
Q ss_pred HHHHhcCChhHHHHHHHHHHc-----cCCCCchhH
Q 005642 513 RGCVAHGDKGLGRKVAERMIE-----LDPENACAY 542 (686)
Q Consensus 513 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~ 542 (686)
..|..+|++++|+.+++++++ +.|+++.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999998 568776543
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.89 E-value=0.0018 Score=50.94 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 005642 472 EIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 536 (686)
+...+..++.+|.+.|++++|+..|++. ...| +...|..+..++...|++++|+..+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4555666666666666666666666655 2333 345566666666666666666666666666544
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.89 E-value=0.015 Score=48.69 Aligned_cols=111 Identities=13% Similarity=-0.026 Sum_probs=64.1
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhHH
Q 005642 216 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDA 291 (686)
Q Consensus 216 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A 291 (686)
+++++|++.|++..+.| .|+.. +...+...+.+++|.+.+++..+.| +......|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666676666665 23332 4444445555666666666666654 44555556666655 5566666
Q ss_pred HHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHh----CCChhhHHHHHHHHHHCC
Q 005642 292 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLD 364 (686)
Q Consensus 292 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 364 (686)
...|++..+ ..++.++..+...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~------------------------------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACG------------------------------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHH------------------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc------------------------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666553321 1344556666666666 667777777777776654
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.78 E-value=0.0075 Score=58.99 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 502 EADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 502 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
..+...|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++.....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 34677888887777778999999999999999998 46678889999999999999999999887754
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.76 E-value=0.025 Score=55.31 Aligned_cols=75 Identities=11% Similarity=-0.022 Sum_probs=62.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHH
Q 005642 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQM-PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQL 545 (686)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 545 (686)
+.++.+|..+.-.+...|++++|...++++ ...|+...|..+...+.-.|+.++|...+++++.++|..+ +|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence 347888888888888889999999999988 3568888888888889999999999999999999999653 44433
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.76 E-value=0.012 Score=60.08 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=78.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 005642 444 LSACDHCGLVKEGQKWFDAMKWQY--HIDPE----IEHYSCMVDLFARAGCLNEAVNLIEQM---------PFEAD-VGM 507 (686)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 507 (686)
+..+.+.|++++|++++++..+.. -+.|+ ..+++.++.+|...|++++|..++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999887321 13332 567899999999999999999999876 13344 455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCCchhHH
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIE-----LDPENACAYI 543 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 543 (686)
++.+...|...|++++|+.+++++++ +.|+++.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 89999999999999999999999998 5787765443
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.70 E-value=0.0013 Score=65.47 Aligned_cols=207 Identities=13% Similarity=0.142 Sum_probs=146.9
Q ss_pred chhHHHHHHHHHhhccCccchhhHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCCChhhHHHHHHHH
Q 005642 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82 (686)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 82 (686)
.+|+.|..++.++.+.+..++...+..-..+.. .++. +=+.|+-+|++.+++.+-..++. .||..--..+.+-|
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~-IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESY-VETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRC 154 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTT-TTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccc-cHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHH
Confidence 467788899999999999998888887666653 3444 56899999999999877554432 36666667888888
Q ss_pred HhcCCHHHHHHHHhhCCC------------------------CCcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCC
Q 005642 83 MKLGHKEKSLQLFNVMPQ------------------------KNDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF 138 (686)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~------------------------~~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~ 138 (686)
...|.++.|.-+|..+.. .+..||-.+-.+|... +.++.|...--.++-.
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~--~EfrLAqicGLniIvh---- 228 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG--KEFRLAQMCGLHIVVH---- 228 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHS--CTTTTTTHHHHHHHCC----
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCc--hHHHHHHHhcchhccc----
Confidence 899999999888887742 3567999999999987 5566665554444332
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhh----cCCC-------Chhh
Q 005642 139 DSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDR----TTDT-------SSVM 204 (686)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~-------~~~~ 204 (686)
+.-...++..|-..|.+++-+.+++.-.. ...-.|+-|.-.|++- +.++-.+-++. +.-| ....
T Consensus 229 -adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 229 -ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp -SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 22233466678888999998888887663 4555677766666654 44444444442 2112 3557
Q ss_pred HHHHHHHHHhcCChhHHHH
Q 005642 205 WNSMISGYISNNEDTEALL 223 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~ 223 (686)
|.-++-.|.+-.+++.|..
T Consensus 307 W~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHH
Confidence 9999999999888887754
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.25 E-value=0.21 Score=55.99 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 005642 144 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 223 (686)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 223 (686)
..++..+.+.|..+.|.++.+.- ..-.......|++++|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 55666677778888887766321 122344567788888888877663 36788888999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCc
Q 005642 224 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 303 (686)
Q Consensus 224 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 303 (686)
.|.++.. |..+...+...|+.+...++-+.....|. ++.-..+|.+.|++++|.+++.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~------- 760 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI------- 760 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH-------
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH-------
Confidence 8887743 33455555556666666655555555441 1223344556677777766554
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHhhCC
Q 005642 304 ILLNTMITVYSSCGRIEDAKHIFRTMP 330 (686)
Q Consensus 304 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 330 (686)
+.+++++|..+-+...
T Consensus 761 -----------~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 761 -----------KSQRFSEAAFLGSTYG 776 (814)
T ss_dssp -----------HTTCHHHHHHHHHHTT
T ss_pred -----------HcCChHHHHHHHHHhC
Confidence 4456666666555543
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.13 E-value=0.034 Score=43.73 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHH
Q 005642 473 IEHYSCMVDLFARAGCLNEAVNLIEQMP---------FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYI 543 (686)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 543 (686)
..-...|+..+.+.|+++.|...|+... ..+....+..+..++.+.|+++.|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344455556666666666666655541 1124567888889999999999999999999999998877655
Q ss_pred HHH
Q 005642 544 QLS 546 (686)
Q Consensus 544 ~l~ 546 (686)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.09 E-value=0.018 Score=53.94 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=68.9
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHccCCCC-chhHHHHHHHHhhc-CCcch
Q 005642 489 LNEAVNLIEQM-PFEAD---VGMWSSILRGCVA-----HGDKGLGRKVAERMIELDPEN-ACAYIQLSSIFATS-GEWEK 557 (686)
Q Consensus 489 ~~~A~~~~~~~-~~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 557 (686)
...|...+++. .+.|+ ...|..+...|.. -|+.++|++.|+++++++|+. ..++..++..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 35666 4567777777777 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhcCCCCCCCc
Q 005642 558 SSLIRDIMREKHVGKLPGC 576 (686)
Q Consensus 558 a~~~~~~~~~~~~~~~~~~ 576 (686)
+.+++++.....+...|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999987665544653
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.90 E-value=0.53 Score=37.96 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=65.1
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 486 AGCLNEAVNLIEQMPFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 486 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
+|+......-+-.+. .+.......++.+..+|+.+.-..++..++..+|.++.....++.+|.+.|+..+|.+++++.
T Consensus 74 C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 455555555555543 244556667888899999999999999876666668889999999999999999999999999
Q ss_pred HhcCCC
Q 005642 566 REKHVG 571 (686)
Q Consensus 566 ~~~~~~ 571 (686)
.++|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 998875
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.84 E-value=0.051 Score=41.63 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=48.8
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 005642 471 PEIEHYSCMVDLFARAGC---LNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPE 537 (686)
Q Consensus 471 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 537 (686)
+++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++..|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 366777777777754444 67788888776 3455 4666777777788888888888888888888887
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.82 E-value=0.046 Score=45.86 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHH
Q 005642 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAG---CLNEAVNLIEQM-PFE-A--DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 453 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~li~~~~~~g~~~~A~ 525 (686)
...+.+.|.+..+ .+ .++..+...+..++.+.+ +.++++.++++. ... | +...+-.+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455556665552 23 367888888888888887 566888888876 223 5 3556667778889999999999
Q ss_pred HHHHHHHccCCCCchh
Q 005642 526 KVAERMIELDPENACA 541 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~ 541 (686)
+.++++++.+|++..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999987653
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.54 E-value=0.029 Score=47.09 Aligned_cols=67 Identities=13% Similarity=-0.043 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccC-C-CCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 502 EADVGMWSSILRGCVAHG---DKGLGRKVAERMIELD-P-ENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 502 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.++..+...+..++.+.+ ++++++.+++..++.+ | ++...+..++-+|.+.|+|++|+++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 468888888999999988 6779999999999988 7 45778999999999999999999999988873
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.37 E-value=0.25 Score=55.41 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=42.3
Q ss_pred hcCChHHHHH-HHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005642 152 KCGDFNSANQ-VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 230 (686)
Q Consensus 152 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (686)
..+++++|.+ ++..++ +......++..+.+.|..++|.++.+. . ..-.......|++++|+++.+.+
T Consensus 611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~-- 678 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDE-- 678 (814)
T ss_dssp HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTC--
T ss_pred HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhh--
Confidence 3456666655 443322 011224444555555555555544421 1 01122233445555555543221
Q ss_pred CCCCcCHHHHHHHHHHHHccCChhhHHHHHHH
Q 005642 231 NGVLEDASTLASVLSACSSLGFLEHGKQVHGH 262 (686)
Q Consensus 231 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 262 (686)
.+...|..+...+.+.++++.|.+.|..
T Consensus 679 ----~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 679 ----SAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp ----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----CcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2344555555555555555555555544
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.22 E-value=4.9 Score=44.56 Aligned_cols=412 Identities=10% Similarity=0.021 Sum_probs=202.6
Q ss_pred hHHHHHHHHHhhccCccchh-hHHHHHHHHhCC-CCCchhhHHHHHHHHHhcCCcHHHHHHhccCCC-CCh-hhHHHHHH
Q 005642 5 IDYLARLLQSCNTHHSIHVG-KQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNC-FSWNAMIE 80 (686)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~ 80 (686)
++.+..++.+|...-.++.- .++...+...-. .+.+ -|..++..+.+.++.+.+.++|+.+.. .|. ..|..-..
T Consensus 194 ~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~--dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFd 271 (963)
T 4ady_A 194 VKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNC--DYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFD 271 (963)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSC--CHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCch--hHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34555556666555544432 233333322111 1112 456778888888999999999998642 233 34443222
Q ss_pred HHHhcCCH---HHHHHHH------hhCCC--CC---cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCC---ChhHH
Q 005642 81 GFMKLGHK---EKSLQLF------NVMPQ--KN---DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDF---DSVLG 143 (686)
Q Consensus 81 ~~~~~g~~---~~A~~~~------~~m~~--~~---~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~ 143 (686)
+.+.++- ++..+-+ +++.+ .+ ...|..++.-.... +.. +.+.+ +..+.+ -..+-
T Consensus 272 -L~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~~~~Lyl~FL~~~n~~---d~~----~l~~~-K~~ld~r~s~~~~A 342 (963)
T 4ady_A 272 -LVSSASQQLLEILVTELTAQGYDPALLNILSGLPTCDYYNTFLLNNKNI---DIG----LLNKS-KSSLDGKFSLFHTA 342 (963)
T ss_dssp -HHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHHHHHHHHHHHHHHCCC---CHH----HHHHH-HHHSCTTSHHHHHH
T ss_pred -HhcccchHHHHHHHHhccccchhHHHHHHhCCCChHHHHHHHHHhcccc---chh----hHHHH-HhhhcchhhHHHHH
Confidence 3332221 1111111 11111 11 12233333222111 111 12222 222221 12344
Q ss_pred HHHHHHHHhcCChHHH-HHHH-hccCC-CChhhHHH-HHHHHHccCCHHHHHHHHhhcCCC----Ch--hhHHHHHHHHH
Q 005642 144 SSLVNLYGKCGDFNSA-NQVL-NMMKE-PDDFCLSA-LISGYANCGKMNDARRVFDRTTDT----SS--VMWNSMISGYI 213 (686)
Q Consensus 144 ~~l~~~~~~~g~~~~A-~~~~-~~~~~-~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~ 213 (686)
.++.+++..+|--.+. .... +++.+ .+..-+.+ .--+....|+.++++.+++..... +. ..-..+.-+.+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli 422 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLI 422 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHh
Confidence 5677888888754433 1111 11111 22122222 234467889999999999876651 22 23334445566
Q ss_pred hcCChhHHHHHHHHHHHCCC-------CcCHHHHHHHHHHHHccCC-hhhHHHHHHHHHHcCCCchH--HHHHHHHHHHH
Q 005642 214 SNNEDTEALLLFHKMRRNGV-------LEDASTLASVLSACSSLGF-LEHGKQVHGHACKVGVIDDV--IVASALLDTYS 283 (686)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~ 283 (686)
..|..++++.++...+...- .+....-..+.-+.+-.|. -+++...+..++...- +.. ....+|...+.
T Consensus 423 ~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 423 YAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp TTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 67776778887777665321 0111112222222333332 2344555555554321 111 12233445556
Q ss_pred hcCChhHHHHHHHhcccC-Cchh--HHHHHHHHHhCCCHHHHHHHHhhCCC-CCch-hHH---HHHHHHHhCCChhhHHH
Q 005642 284 KRGMPSDACKLFSELKVY-DTIL--LNTMITVYSSCGRIEDAKHIFRTMPN-KSLI-SWN---SMIVGLSQNGSPIEALD 355 (686)
Q Consensus 284 ~~g~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~ 355 (686)
-.|+.+....++..+.+. +... ...+.-++...|+.+.+..+.+.+.. .++. -|. ++..+|+..|+.....+
T Consensus 502 GTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~ 581 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKR 581 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 667777667776655422 2222 22333445567888777777776653 3432 233 34567778888877777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhchh---HHHHHHHHHHH
Q 005642 356 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGY---DALALFNEMRN 430 (686)
Q Consensus 356 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~A~~~~~~m~~ 430 (686)
+++.+... ...+......+.-++...|+.+.+.++++.+.+.+ .|.+....++.-+....|. ++++++..+..
T Consensus 582 LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 582 LLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 88888764 22233333333334445666666667666555443 4555555555555554444 78888888864
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.12 E-value=0.06 Score=44.45 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHhcCCh------HHHHHHHHhC--CCCCCH-HHHHHHHHH------HHhcCChhHHHHHHHHHHccCC
Q 005642 472 EIEHYSCMVDLFARAGCL------NEAVNLIEQM--PFEADV-GMWSSILRG------CVAHGDKGLGRKVAERMIELDP 536 (686)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~--~~~p~~-~~~~~li~~------~~~~g~~~~A~~~~~~~~~~~p 536 (686)
|.++|-..++...+.|++ ++..++|++. .++|+. ..|...+.. +...+|+++|.++|+.++++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 455555555555555555 5555555554 133321 112222221 1234788888999988887766
Q ss_pred CCchhHHHHHHHHhhcCCcchHHHHHHHHHhcCC
Q 005642 537 ENACAYIQLSSIFATSGEWEKSSLIRDIMREKHV 570 (686)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (686)
.-+.+|...+.--.++|+.+.|++++......+.
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5667777777777888999999999887776543
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.96 Score=38.89 Aligned_cols=99 Identities=10% Similarity=0.156 Sum_probs=48.6
Q ss_pred HHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHH
Q 005642 181 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 260 (686)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 260 (686)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++... +..+.-.|.-.|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34455555555554443 2345666666666666666666666665432 233333444445555544444
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 005642 261 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 296 (686)
Q Consensus 261 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 296 (686)
+.....|- ++.-...+.-.|+++++.++|.
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 43333331 1222333444555555555554
No 231
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.82 E-value=2.9 Score=44.47 Aligned_cols=307 Identities=8% Similarity=-0.025 Sum_probs=154.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhH
Q 005642 212 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSD 290 (686)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~ 290 (686)
..+.|++..+..+...+...-+ .....|..+.... .....+ ++-..+.+.. .+.....-...+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 4467888877777666533212 1122343333222 112333 3434444432 22233444666777778888888
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhC---CCCCchhHHHHHHHHHhCCChhhH--HHHHHHHHHCCC
Q 005642 291 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM---PNKSLISWNSMIVGLSQNGSPIEA--LDLFCNMNKLDL 365 (686)
Q Consensus 291 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~m~~~g~ 365 (686)
....+.. .+.+...-.....+....|+..+|......+ ....+..+..++..+.+.|..... ..=++.+...|
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~- 168 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG- 168 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-
Confidence 8886665 4445555556777788888876666554443 223567788888888877766543 23333333332
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh---------CCCcchhHHHHH---HHHHHhch-hHHHHHHHHHHHCC
Q 005642 366 RMDKFSLASVISACANISSLELGEQVFARVTII---------GLDSDQIISTSL---VDFYCKCG-YDALALFNEMRNTG 432 (686)
Q Consensus 366 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l---i~~~~~~~-~~A~~~~~~m~~~~ 432 (686)
+......++... ..+.-..+.. +..+.+. ...++...-..+ +.-+.+.. +.|...+....+..
T Consensus 169 --~~~~a~~l~~~l-~~~~~~~a~~-~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~ 244 (618)
T 1qsa_A 169 --NTGLVTVLAGQM-PADYQTIASA-IISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ 244 (618)
T ss_dssp --CHHHHHHHHHTC-CGGGHHHHHH-HHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHhC-CHHHHHHHHH-HHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhcc
Confidence 122222222111 1111111111 1111111 011111111111 22222222 27777777776433
Q ss_pred CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHH
Q 005642 433 VKPTII----TFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQMPFEA--DVG 506 (686)
Q Consensus 433 ~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~ 506 (686)
. .+.. .+..+.......+...++...+..... ..++.....-.+..-.+.|+++.|...|+.+...+ ...
T Consensus 245 ~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r 320 (618)
T 1qsa_A 245 Q-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE 320 (618)
T ss_dssp T-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHH
T ss_pred C-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHh
Confidence 2 2322 222333334444534555666665441 22343344445555557788888888888885332 233
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
..--+..++...|+.++|...++++.+
T Consensus 321 ~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 321 WRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333455667778888888888888874
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.55 E-value=0.13 Score=40.24 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC-------CCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 504 DVGMWSSILRGCVAHGDKGLGRKVAERMIELD-------PENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 504 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
+..-+..+...+...|+++.|...++++++.. +..+.++..++.++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556678889999999999999999998842 335677999999999999999999999988764
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.74 E-value=1.4 Score=37.79 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=51.5
Q ss_pred HHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 282 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
....|+++.|.++.+++ .+...|..|.......|+++-|++.|.+..+ +..+.-.|.-.|+.++-..+-+...
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555555555443 3344556666666666666666666665543 3334444445555555444444433
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 005642 362 KLDLRMDKFSLASVISACANISSLELGEQVFA 393 (686)
Q Consensus 362 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 393 (686)
..| -++....++.-.|+++++.++|.
T Consensus 88 ~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 88 TRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 332 13344444555666666666664
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.63 E-value=0.67 Score=37.27 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChhHHH
Q 005642 453 VKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNE---AVNLIEQMP-FE-A--DVGMWSSILRGCVAHGDKGLGR 525 (686)
Q Consensus 453 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~li~~~~~~g~~~~A~ 525 (686)
...+.+-|.+... .+. |+..+-..+..++.+.....+ ++.+++++- .. | .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344555555442 232 677777778888888777666 777777763 22 4 2344556677788999999999
Q ss_pred HHHHHHHccCCCCchhHH
Q 005642 526 KVAERMIELDPENACAYI 543 (686)
Q Consensus 526 ~~~~~~~~~~p~~~~~~~ 543 (686)
+.++.+++.+|++..+..
T Consensus 95 ~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH
Confidence 999999999998866443
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.25 Score=53.59 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=49.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHH
Q 005642 512 LRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIM 565 (686)
Q Consensus 512 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (686)
.+-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445778899999999999999999999999999999999999999999888754
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.09 E-value=1.3 Score=35.79 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhccCC-CChhhHHHHHHHHHccCCHHHHHHHHhhc
Q 005642 119 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYANCGKMNDARRVFDRT 197 (686)
Q Consensus 119 ~~~~~a~~i~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (686)
|..+++.++.....+.. +..-||=++.-....-+-+...++++.+.+ -|. ..+|++......+-.+
T Consensus 21 G~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGVIN 87 (172)
T ss_dssp TCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHHHHh
Confidence 55666666665555432 333444444444444444455555554442 111 1344444444444443
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 005642 198 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269 (686)
Q Consensus 198 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 269 (686)
.. +....+.-+..+..+|+-+.-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 88 n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 88 NT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp TC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred cc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33 234566677888889999998888888644 35788888888999999999999999999999998864
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.60 E-value=0.21 Score=46.80 Aligned_cols=105 Identities=10% Similarity=0.174 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHh-----cCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCC
Q 005642 453 VKEGQKWFDAMKWQYHIDPE---IEHYSCMVDLFAR-----AGCLNEAVNLIEQM-PFEAD--VGMWSSILRGCVA-HGD 520 (686)
Q Consensus 453 ~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~li~~~~~-~g~ 520 (686)
...|...+++.. .+.|+ ...|..++..|.+ -|+.++|.+.|++. .+.|+ ..++....+.++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 455666666665 46675 5678888888888 48999999999887 46663 6777777787777 488
Q ss_pred hhHHHHHHHHHHccCCCC-chhHHHHHHHHhhcCCcchHHHHHHHHH
Q 005642 521 KGLGRKVAERMIELDPEN-ACAYIQLSSIFATSGEWEKSSLIRDIMR 566 (686)
Q Consensus 521 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (686)
.++|.+.+++++...|.. +. ..+. ..++-++|..++.++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKLL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHHH----HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhHH----HHHHHHHHHHHHHHhH
Confidence 999999999999877753 22 2233 3334455666555443
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.36 E-value=7.9 Score=36.89 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhC---CChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005642 302 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN---GSPIEALDLFCNMNKLDLRMDKFSLASVISA 378 (686)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 378 (686)
|+..+..+...|.+.|++.+|+..|-.....++..+..++.-+... |...++--..-+ .++ -
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------aVL-~ 197 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------LVF-N 197 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------HHH-H
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HHH-H
Confidence 5556666677777777777777766633333455666555554443 443332211111 122 3
Q ss_pred HHccCChHHHHHHHHHHH
Q 005642 379 CANISSLELGEQVFARVT 396 (686)
Q Consensus 379 ~~~~~~~~~a~~~~~~~~ 396 (686)
+.-.+++..|...+....
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 445677777777777544
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.91 Score=49.24 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=47.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005642 444 LSACDHCGLVKEGQKWFDAMKWQYHIDP-EIEHYSCMVDLFARAGCLNEAVNLIEQMP 500 (686)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (686)
...|...|+++.|+++-++.+ ...| +..+|..|..+|.+.|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345667899999999999988 3556 68999999999999999999999999885
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.86 E-value=0.41 Score=38.48 Aligned_cols=80 Identities=11% Similarity=-0.092 Sum_probs=60.2
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHccC-C-CCchhHHHHHHHHhhcCCcchHHHH
Q 005642 489 LNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGL---GRKVAERMIELD-P-ENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 489 ~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
...+.+.|.+.. -.|+..+-..+..++.+..+... ++.+++.+.... | ..-.....++-++.+.|+|++|+++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444331 24777887778888888877655 889999888876 5 3556788899999999999999999
Q ss_pred HHHHHhc
Q 005642 562 RDIMREK 568 (686)
Q Consensus 562 ~~~~~~~ 568 (686)
++.+.+.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988873
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.60 E-value=12 Score=35.80 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=36.7
Q ss_pred HHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCcCHHHHHHHHHHHHcc
Q 005642 175 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF----HKMRRNGVLEDASTLASVLSACSSL 250 (686)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~ 250 (686)
.++..=|.+.+++++|++++.. -...+.+.|+...|.++- +-..+.++++|......++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3444456666777777665432 233445556665554443 4444566777777666666666543
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.49 E-value=12 Score=35.56 Aligned_cols=166 Identities=10% Similarity=0.020 Sum_probs=102.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCcCHHHHHHHHHHHHc
Q 005642 174 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL----FHKMRRNGVLEDASTLASVLSACSS 249 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 249 (686)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34455566777777777776543 23445567777666554 4555567888898888888887765
Q ss_pred cCChh-hHHHHHHHH----HHcC--CCchHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhC---CCH
Q 005642 250 LGFLE-HGKQVHGHA----CKVG--VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC---GRI 319 (686)
Q Consensus 250 ~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 319 (686)
...-+ .-.++...+ .+.| ...++.....+...|.+.|++.+|...|---...|...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 43211 123333333 3333 2347888899999999999999999988633333455565555544443 433
Q ss_pred HHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 320 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 320 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
.++--. ....+-.|.-.++...|..+|+...
T Consensus 185 ~e~dlf-----------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVAEF-----------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH-----------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred chHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 332111 1223344556788888888887765
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.91 E-value=14 Score=35.40 Aligned_cols=177 Identities=13% Similarity=0.048 Sum_probs=106.0
Q ss_pred HHHHccCCH---HHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhh
Q 005642 179 SGYANCGKM---NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 255 (686)
Q Consensus 179 ~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 255 (686)
......|++ =+|.+ .|.++..-|.+.+++++|++++..--. .+.+.|+...
T Consensus 20 ~~~I~~G~y~~~YEAHQ-----------~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~s 73 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQ-----------ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGS 73 (336)
T ss_dssp HHHHHHCCHHHHHHHHH-----------HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHH
T ss_pred HHHHhCCCCccccHHHH-----------HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcch
Confidence 334556777 55554 456677788999999999998754321 2233344443
Q ss_pred HH----HHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHH-HHHHHhcc----------cCCchhHHHHHHHHHhCCCHH
Q 005642 256 GK----QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA-CKLFSELK----------VYDTILLNTMITVYSSCGRIE 320 (686)
Q Consensus 256 a~----~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~ 320 (686)
|. -+.+-..+.+.++|......++..+.....-+-. .++.+++. ..|+.....+...|.+.+++.
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 33 3345556677788887777777777766542211 12222222 236777888889999999999
Q ss_pred HHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005642 321 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 396 (686)
Q Consensus 321 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 396 (686)
+|+..|-.-.++++..+..++.-+...+...++--.+- ..++ -|.-.+++..|...+....
T Consensus 154 ~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfia--------------RaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 154 AAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCA--------------RAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHH--------------HHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHH--------------HHHH-HHHHhCCHHHHHHHHHHHH
Confidence 99998864333334677666665555444333322221 1222 3455677777777666544
No 244
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.27 E-value=4.4 Score=30.55 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=50.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHH
Q 005642 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356 (686)
Q Consensus 277 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 356 (686)
.+.+.+...++ +++..+.+ +..+.+.|++++|..+.+....||...|.++-. .+.|..+++...
T Consensus 28 tIAdwL~~~~~-~E~v~lIR-------------~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 28 CIAEWLHLKGE-EEAVQLIR-------------LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp HHHHHHHHTTC-HHHHHHHH-------------HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHH-------------HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHH
Confidence 34445555555 55554444 446777888888888888888888888877644 356777777777
Q ss_pred HHHHHHCCCCCCHHHH
Q 005642 357 FCNMNKLDLRMDKFSL 372 (686)
Q Consensus 357 ~~~m~~~g~~p~~~t~ 372 (686)
+..+..+| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 76666554 3444443
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.13 E-value=4.1 Score=30.65 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHH
Q 005642 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 356 (686)
Q Consensus 277 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 356 (686)
.+.+.+...++ +++..+.+ +..+.+.|++++|..+.+....||...|.++-. .+.|..+++...
T Consensus 27 tIAdwL~~~~~-~E~v~lIR-------------~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 27 CIAEWLERLGQ-DEAARLIR-------------ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp HHHHHHHHTTC-HHHHHHHH-------------HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHH-------------HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHH
Confidence 34455555555 55555444 456778888888888888888889888877644 467888888877
Q ss_pred HHHHHHCCCCCCHHHH
Q 005642 357 FCNMNKLDLRMDKFSL 372 (686)
Q Consensus 357 ~~~m~~~g~~p~~~t~ 372 (686)
+..+..+| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77776664 4444444
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.65 E-value=4.6 Score=33.07 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=35.6
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 005642 470 DPEIEHYSCMVDLFARAGCLN---EAVNLIEQM-PFEA--DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA 539 (686)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 539 (686)
.|+..+-..+..++.+....+ +++.+++++ ...| .....-.+.-++.+.|++++|++..+.+++.+|++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 345555555555555554433 344444444 1222 122333344455566666666666666666666553
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.96 E-value=37 Score=37.73 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhcCCcHHHHHHhccCC
Q 005642 43 IANRLLQMYMRCGNPTDALLLFDEMP 68 (686)
Q Consensus 43 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 68 (686)
+...++..+.+.|.+.+|..+.=+..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~e 172 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGY 172 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 44555555666666666655554443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.18 E-value=2 Score=34.67 Aligned_cols=70 Identities=10% Similarity=0.150 Sum_probs=33.7
Q ss_pred CChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 471 PEIEHYSCMVDLFARAGCL---NEAVNLIEQM-PFEA--DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
|+..+-..+..++.+.... .+++.+++++ +..| ....+-.+.-++.+.|++++|.+..+.+++.+|++..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4445545555555554433 2344444443 1223 1333444444555555666666666666655555533
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.43 E-value=15 Score=30.50 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=18.2
Q ss_pred CCchhHHHHHHHHHhCCCh------hhHHHHHHHHHHC
Q 005642 332 KSLISWNSMIVGLSQNGSP------IEALDLFCNMNKL 363 (686)
Q Consensus 332 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~ 363 (686)
.|..+|-..+...-+.|++ ++.+++|++....
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 3556666666666555666 5555555555543
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.37 E-value=20 Score=36.34 Aligned_cols=92 Identities=9% Similarity=0.064 Sum_probs=43.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHh-cCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHH
Q 005642 442 AILSACDHCGLVKEGQKWFDAMKWQ-YHIDPE---IEHYSCMVDLFARAGCLNEAVNLIEQMP-----FEAD----VGMW 508 (686)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~ 508 (686)
.|...+...|++.+|..++..+..+ .+..+. .+.+...++.|...+++..|..+++++. ..++ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3444555556666666666555322 121111 3345555555555666666655555541 1111 1223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 509 SSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 509 ~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...+..+...+++.+|-+.|.++.+
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444555555555555544443
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.17 E-value=2.1 Score=42.76 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 507 MWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 507 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
....++..+...|+.++|...+.+++..+|-+...|..++.+|...|+..+|.+.|+...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455777888999999999999999999999999999999999999999999998887654
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.12 E-value=6 Score=31.93 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCC-CchhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 503 ADVGMWSSILRGCVAHGD---KGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 503 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
|+..+-..+..++.+..+ ..+++.+++.+....|. ....+..++-++.+.|+|++|+++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443344444444432 23444555555544442 233444455555555555555555554443
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.39 E-value=6.1 Score=33.36 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=39.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 441 TAILSACDHCGLVKEGQKWFDAMKWQYHIDPE-------IEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
..-+..+...|.++.|+-+.+.+....+.+|+ ..++..+++++...|++..|...|++.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33345566677777777777765433233333 236677888888888888888888774
No 254
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.02 E-value=22 Score=31.36 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=11.2
Q ss_pred HhccCCCCChhhHHHHHHHHHhcCC
Q 005642 63 LFDEMPRRNCFSWNAMIEGFMKLGH 87 (686)
Q Consensus 63 ~~~~~~~~~~~~~~~li~~~~~~g~ 87 (686)
+++.+..++...-...+..+.+.|.
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3333334444444444444444444
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.75 E-value=17 Score=29.80 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCC-CchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 502 EADVGMWSSILRGCVAHGD---KGLGRKVAERMIELDPE-NACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 502 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.|+..+-..+..++.+..+ ..+++.+++.+....|. .-.....++-++.+.|+|++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4667666667777776664 45677788888877774 4455677778888888888888888877763
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.24 E-value=11 Score=43.61 Aligned_cols=160 Identities=10% Similarity=0.051 Sum_probs=72.8
Q ss_pred HHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhH
Q 005642 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256 (686)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 256 (686)
++..+.+.+..+.+.++..... .++...-.+..+|...|++++|.+.|++.- .|+..+.... .....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~~~- 884 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVLRE- 884 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSHHH-
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhhcc-
Confidence 4444555666666655544333 333444456666777777777777776542 1121110000 00000
Q ss_pred HHHHHHHHHcC--CCchHHHHHHHHHHHHhcCChhHHHHHHHhcc----cCCc----hhHHHHHHHHHhCCCHHHHHHHH
Q 005642 257 KQVHGHACKVG--VIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYDT----ILLNTMITVYSSCGRIEDAKHIF 326 (686)
Q Consensus 257 ~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~ 326 (686)
+..+.... ...-...|..++..+.+.+.++.+.++-.... +.+. ..|..+.+.+...|++++|...+
T Consensus 885 ---~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 885 ---FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp ---HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ---cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00000000 01112334455555555555555554433222 1111 13555666666666666666666
Q ss_pred hhCCCCC--chhHHHHHHHHHhCCChhh
Q 005642 327 RTMPNKS--LISWNSMIVGLSQNGSPIE 352 (686)
Q Consensus 327 ~~~~~~~--~~~~~~li~~~~~~g~~~~ 352 (686)
-.++... ......++..++..|+.+.
T Consensus 962 ~~~pd~~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 962 MVLSTTPLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHCCHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhCCChhh
Confidence 5554322 2345556666666555443
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.16 E-value=6.2 Score=29.93 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
+..+-+..+......|++....+.+.+|.+.+++..|.++|+..+.+.+. ...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 45555666666778899999999999999999999999999988755443 3556766654
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.33 E-value=59 Score=34.44 Aligned_cols=135 Identities=7% Similarity=-0.017 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
++...+....... ++.....-.+....+.|+++.|...|+.|.. .......-.--+..++...|+.++|..+|+.+
T Consensus 270 ~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~--~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 270 EQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPM--EAKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT--TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccc--cccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555566544332 2333333344444567999999999998862 11123445566778889999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-----hhHHHHHHHHhhcCCcchHHHHHHHHHh
Q 005642 500 PFEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENA-----CAYIQLSSIFATSGEWEKSSLIRDIMRE 567 (686)
Q Consensus 500 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (686)
.... +|-.++.+ .+.|..-.. ......+... ..-...+..+...|....|...+..+.+
T Consensus 346 a~~~---~fYg~lAa-~~Lg~~~~~-----~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 346 MQQR---GFYPMVAA-QRIGEEYEL-----KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HTSC---SHHHHHHH-HHTTCCCCC-----CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCC---ChHHHHHH-HHcCCCCCC-----CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 5322 33223222 233321100 0001111111 1123445667788999999888777664
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.30 E-value=14 Score=31.08 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=10.4
Q ss_pred HHHHHHhcCChhHHHHHHHhc
Q 005642 278 LLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 278 l~~~~~~~g~~~~A~~~~~~~ 298 (686)
+..+|.+.+++++|+.+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 444555555555555555444
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.83 E-value=75 Score=36.79 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=32.4
Q ss_pred HHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCCCHHHHHHHHhhCC
Q 005642 277 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 330 (686)
Q Consensus 277 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 330 (686)
.++..+.+.+..+-+.++..- .+.++..--.+..++...|++++|...|.+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhh-ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 345555566666666554432 23444444556677777888888888887764
No 261
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=78.46 E-value=34 Score=30.01 Aligned_cols=29 Identities=10% Similarity=-0.018 Sum_probs=11.7
Q ss_pred CCchhHHHHHHHHHhCCChhhHHHHHHHHH
Q 005642 332 KSLISWNSMIVGLSQNGSPIEALDLFCNMN 361 (686)
Q Consensus 332 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (686)
++...-...+.++.+.+. .++...+..+.
T Consensus 155 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 344333444444444443 23334444443
No 262
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=77.39 E-value=36 Score=29.61 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=55.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 005642 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217 (686)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 217 (686)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.++.+....+.+.+..++...-...+.++.+.|.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34444444555555555544444444444445555555555555555554433333344444555566666666666665
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 005642 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSS 249 (686)
Q Consensus 218 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 249 (686)
.++...+..+.+. ++...-.....++.+
T Consensus 168 -~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 168 -ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp -HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 3466666666543 344444444444443
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.00 E-value=4.1 Score=37.53 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=41.6
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCch
Q 005642 482 LFARAGCLNEAVNLIEQM-PFEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENAC 540 (686)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 540 (686)
.+.+.|++++|++....- +..| |...-..++..++-.|++++|.+-++...+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 345677888887766554 4445 5566666777888888888888888888888885433
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.24 E-value=17 Score=36.18 Aligned_cols=70 Identities=4% Similarity=-0.040 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHH-----cCCCchHHHH
Q 005642 205 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-----VGVIDDVIVA 275 (686)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 275 (686)
...++..+...|++++++..+..+... -+.+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344556666677777777766666554 244666677777777777777777777666543 3666665543
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.38 E-value=26 Score=26.62 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 349 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
+.-+..+-++.+....+-|++......+.+|.+.+++..|.++++-+.... .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344667777777788899999999999999999999999999999876643 222445665554
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.53 E-value=15 Score=29.52 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005642 420 DALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVD 481 (686)
Q Consensus 420 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 481 (686)
+..+-+..+...++.|++....+.+.+|.+.+++..|.++|+-.+.+.+ +...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4455566666677889999999999999999999999999998885544 44566776654
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.44 E-value=35 Score=31.40 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=24.2
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 448 DHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
.+.|+++++++....-++ .-+-|...-..++..+|-.|+++.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555555555554442 11224455555555555555555555544444
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.34 E-value=27 Score=26.35 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=37.9
Q ss_pred HHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHH
Q 005642 179 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 242 (686)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 242 (686)
..+...|++++|..+.+...-||...|-+|-.. +.|-.+++..-+.++..+| .|....|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 345566666666666666666667777666543 5666677776666766664 455555543
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.55 E-value=29 Score=26.27 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=33.2
Q ss_pred HHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHH
Q 005642 180 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 241 (686)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 241 (686)
.+...|++++|..+.+...-||...|-+|-.. +.|-.+++..-+.++..+| .|....|.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34555666666666666666666666655443 4555566666665665554 44444443
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.81 E-value=20 Score=28.94 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
+..+-++.+...++.|++......+++|.+.+|+..|..+++-+...- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 456666777777889999999999999999999999999998876652 23344455444
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=66.61 E-value=58 Score=34.72 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=26.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 005642 174 LSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYIS 214 (686)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 214 (686)
.-.+|-.|.|+|++++|.++.++... .-...+-..+..|+.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 44677788899999999998876542 122456666677764
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.70 E-value=1.1e+02 Score=29.77 Aligned_cols=75 Identities=9% Similarity=0.035 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC--hhhHHHHHHHHHHcCCCchHHHHHHHH
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF--LEHGKQVHGHACKVGVIDDVIVASALL 279 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~ 279 (686)
..+.++.-|...|+.++|.+.++++..-.+. .......+..++-+.++ .+...+++..+.+.|+-+.......+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3567788888888888888888888421111 12223333444444332 345667777777777655554444433
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.12 E-value=71 Score=27.58 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=64.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 005642 138 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 217 (686)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 217 (686)
+|..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.++.+....+.+.+..++.......+.++.+.++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34444444455555555444444444444445544444455555555554444444444444555555555555555555
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 005642 218 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 287 (686)
Q Consensus 218 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 287 (686)
.+ +...+..+.. .++...-...+.++.+.++.+. ...+..+.+ .++..+-...+.++.+.|.
T Consensus 106 ~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 106 ER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp GG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 33 3333333332 3444444444555554444322 222222222 2344444444555555544
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.21 E-value=1.2e+02 Score=29.76 Aligned_cols=156 Identities=13% Similarity=0.036 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC--------CChhhHHHHHHHHHcc-CCHHHHHHHHhhcCC---CChhhH----
Q 005642 142 LGSSLVNLYGKCGDFNSANQVLNMMKE--------PDDFCLSALISGYANC-GKMNDARRVFDRTTD---TSSVMW---- 205 (686)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~---~~~~~~---- 205 (686)
....|...|.+.|+.++..+++..... .....-..++..+... +..+.-.++..+..+ .+-..|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999998887763 2233455666666553 333333444433322 111223
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHccCChhhHHHHHHHHHHcC--CCchHHHH-
Q 005642 206 --NSMISGYISNNEDTEALLLFHKMRRNGVLED-----ASTLASVLSACSSLGFLEHGKQVHGHACKVG--VIDDVIVA- 275 (686)
Q Consensus 206 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~- 275 (686)
.-++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.+++..+....... +.+++.+.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2578889999999999999988876311111 2234555666778889999988887775432 22222221
Q ss_pred ---HHHHHHHH-hcCChhHHHHHHHh
Q 005642 276 ---SALLDTYS-KRGMPSDACKLFSE 297 (686)
Q Consensus 276 ---~~l~~~~~-~~g~~~~A~~~~~~ 297 (686)
..-.-.+. ..+++..|...|-+
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 22233445 67888888777653
No 275
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=57.25 E-value=1.2e+02 Score=27.89 Aligned_cols=81 Identities=15% Similarity=-0.034 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHhcccCCchhHHHHHHHHHhCC--CHHHHHHHHhhCCCCCchhHHHHHHHHHhC
Q 005642 270 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG--RIEDAKHIFRTMPNKSLISWNSMIVGLSQN 347 (686)
Q Consensus 270 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 347 (686)
++..+-...+.++.+.|+.+..-.+..-+..++...-...+.++...+ ..+-...+...+.+++...-...+.++.+.
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 444444455555555554332222333333444443333444444333 222222233333444555555555555555
Q ss_pred CCh
Q 005642 348 GSP 350 (686)
Q Consensus 348 g~~ 350 (686)
|+.
T Consensus 220 ~~~ 222 (280)
T 1oyz_A 220 KDK 222 (280)
T ss_dssp TCG
T ss_pred CCH
Confidence 543
No 276
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=55.38 E-value=70 Score=27.34 Aligned_cols=115 Identities=11% Similarity=0.115 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhch-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005642 387 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-YDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKW 465 (686)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (686)
....++..+.+.|+-.|.......+....+.+ .....+-.++...|+.++.. ...+..+......+.|..++++-..
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I--~~al~~~~~~de~e~a~~l~~Kk~~ 128 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIA--EDALILYTDKLQVEKGVTLAEKLAN 128 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHH--HHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHH--HHHHHhCCchhHHHHHHHHHHHHHh
Confidence 34455556666666666555555555555443 24455666677777753322 1222111111223445555554332
Q ss_pred hcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCCCCC
Q 005642 466 QYHIDPEIEHYSCMVDLFARAG-CLNEAVNLIEQMPFEA 503 (686)
Q Consensus 466 ~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~p 503 (686)
...-.++.....-++..+.+.| .++.+..+++.+...|
T Consensus 129 ~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~ 167 (177)
T 3e3v_A 129 RYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLIF 167 (177)
T ss_dssp HTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC-
T ss_pred hccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCCC
Confidence 2111122334445556666666 4555555555554333
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.89 E-value=1e+02 Score=26.94 Aligned_cols=60 Identities=8% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHc--cCCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 508 WSSILRGCVAHGDKGLGRKVAERMIE--LDPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 508 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
|-..++.+ ..++..++..+|.-+.. +.-..+..|...+..+...|++.+|.++++.-.+.
T Consensus 83 Wl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 83 WIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44444433 23445677777777766 44556777888888888888888888888855543
No 278
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.85 E-value=84 Score=29.73 Aligned_cols=28 Identities=11% Similarity=0.337 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHhccCCCCC
Q 005642 44 ANRLLQMYMRCGNPTDALLLFDEMPRRN 71 (686)
Q Consensus 44 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 71 (686)
...++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4567788888889999999998887653
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.84 E-value=86 Score=28.64 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=9.3
Q ss_pred HHHHHhcCCcHHHHHHhcc
Q 005642 48 LQMYMRCGNPTDALLLFDE 66 (686)
Q Consensus 48 ~~~~~~~g~~~~A~~~~~~ 66 (686)
+...++.|+++....+++.
T Consensus 9 L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3334445555555555543
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.60 E-value=36 Score=34.25 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 005642 476 YSCMVDLFARAGCLNEAVNLIEQMP-----FEADVGMWSSILRGCVAHGDKGLGRKVAERMIE 533 (686)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 533 (686)
...+++.|.+.|++++|.+.|.++. ...-...+-..+..+...+++..+...+.++..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444455555544444441 111133344444444455555555544444433
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.49 E-value=1.6e+02 Score=29.48 Aligned_cols=32 Identities=6% Similarity=-0.065 Sum_probs=17.9
Q ss_pred CCCCchhHHHHHHHHhhcCCcchHHHHHHHHHhc
Q 005642 535 DPENACAYIQLSSIFATSGEWEKSSLIRDIMREK 568 (686)
Q Consensus 535 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (686)
.|-.......++..+.- ..+++.+.+..|...
T Consensus 343 ~~Ys~I~l~~mA~~l~~--s~~~~E~~L~~lI~~ 374 (429)
T 4b4t_R 343 ESYKTLSLKSMASAFGV--SVAFLDNDLGKFIPN 374 (429)
T ss_dssp HTCSEEEHHHHHHHHTS--CHHHHHHHHHHHHHH
T ss_pred HHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHc
Confidence 34444556666666633 355666666666643
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.84 E-value=72 Score=29.65 Aligned_cols=19 Identities=11% Similarity=-0.064 Sum_probs=9.9
Q ss_pred HHHHHhcCCcHHHHHHhcc
Q 005642 48 LQMYMRCGNPTDALLLFDE 66 (686)
Q Consensus 48 ~~~~~~~g~~~~A~~~~~~ 66 (686)
+...+..|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3344455666555555544
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.43 E-value=93 Score=27.17 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 005642 219 TEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 269 (686)
Q Consensus 219 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 269 (686)
.++.++|..|...|+.-. ..-|......+...|++.+|.++|..-++.+-.
T Consensus 96 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 96 HESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 344444444444443332 223333333344444444444444444444433
No 284
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=48.30 E-value=1.4e+02 Score=25.93 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=46.2
Q ss_pred hHHHHHHHHhCCCCCCH--HHHH-----HHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHHH
Q 005642 489 LNEAVNLIEQMPFEADV--GMWS-----SILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSLI 561 (686)
Q Consensus 489 ~~~A~~~~~~~~~~p~~--~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (686)
.+.|+.+++.+.-.-+. .... ..+-.|.+.|.+++|.+++++..+..|.+...-..|..+-.+...+....+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lqn 173 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQH 173 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHHH
Confidence 56678888887533231 1122 2345688999999999999999987777777667777776666666666653
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.81 E-value=94 Score=24.85 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHhccCCCCC---hhhHHHHHHHHHhcCC--HHHHHHHHhhCCCCCcchHHHHHHHHHhc
Q 005642 44 ANRLLQMYMRCGNPTDALLLFDEMPRRN---CFSWNAMIEGFMKLGH--KEKSLQLFNVMPQKNDFSWNMLISGFAKA 116 (686)
Q Consensus 44 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~ll~~~~~~ 116 (686)
...++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+....++..+...+..+-..+.+++.+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 4567778888888888888888887652 2344455555555432 34566667666655666666666665543
No 286
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=42.83 E-value=2e+02 Score=26.28 Aligned_cols=133 Identities=11% Similarity=-0.065 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC-ChhHHHHHHH-h
Q 005642 220 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-MPSDACKLFS-E 297 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~-~ 297 (686)
.++..+..+.. .|+...-...+.++...++.+ +...+..+.+ .++..+-...+.++.+.| ....+...+. .
T Consensus 128 ~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~ 200 (280)
T 1oyz_A 128 KIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEM 200 (280)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 34444444432 345555555555555555533 2233333333 234444444444444444 1233333333 3
Q ss_pred cccCCchhHHHHHHHHHhCCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChhhHHHHHHHHHH
Q 005642 298 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 362 (686)
Q Consensus 298 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (686)
+..++...-...+.++.+.|+.+....+...+..+++ ....+.++.+.|.. .++..+.++..
T Consensus 201 l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~v--r~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 201 LQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTV--YDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSSC--CHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCccH--HHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 3355555555666666666655444444444444442 23344555555553 44555555443
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.31 E-value=1.2e+02 Score=31.18 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------chhHHHHHHHHhhcCCcchHHHHHHHHHhcC
Q 005642 505 VGMWSSILRGCVAHGDKGLGRKVAERMIELDPEN-------ACAYIQLSSIFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 505 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
...++.+++.|...+.++.|..+..+.. .|.. ...+.-++.++.-.++|.+|.+.+....++.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4557888888888888888888887774 4432 1233445777788888888888777666543
No 288
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.08 E-value=1.8e+02 Score=25.58 Aligned_cols=18 Identities=6% Similarity=0.239 Sum_probs=9.2
Q ss_pred HHHhcCChHHHHHHHHhC
Q 005642 482 LFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~ 499 (686)
.|.+.|.+++|.+++++.
T Consensus 123 VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHH
Confidence 344555555555555544
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=41.56 E-value=1.6e+02 Score=26.76 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC----CcchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhH--HHHHHHHH
Q 005642 77 AMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVL--GSSLVNLY 150 (686)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~--~~~l~~~~ 150 (686)
..+...++.|+.+-...+++.-..+ +...++.+..++... +. .+.+.+++.|..++... ..+.+...
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g---~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS---RE----DIVELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT---CH----HHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC---CH----HHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 3445557788888777777765432 222334454444432 33 34555566666554321 11233344
Q ss_pred HhcCChHHHHHHHhccCCCC---hhhHHHHHHHHHccCCHHHHHHHHhhcCC
Q 005642 151 GKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKMNDARRVFDRTTD 199 (686)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 199 (686)
+..|+.+-+..+++.-..++ ...+ ..+...+..|+.+-...+++....
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCCC
Confidence 45677777766666543322 1111 223334556777766666665443
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.77 E-value=1.5e+02 Score=24.59 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHCCCCcC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCch
Q 005642 220 EALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 271 (686)
Q Consensus 220 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 271 (686)
++.++|..|...|+.-. ..-|......+...|++.+|.+++..-++.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 35566666666555443 23344444555555666666666666555554443
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.46 E-value=92 Score=28.11 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=44.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC--CCCc----CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 005642 208 MISGYISNNEDTEALLLFHKMRRN--GVLE----DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 281 (686)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 281 (686)
-+..+....++++|++++++..+. ++++ +.......+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 456677777788877777765431 2221 111222223322222222333334444422 3344445556677
Q ss_pred HHhcCChhHHHHHHHh
Q 005642 282 YSKRGMPSDACKLFSE 297 (686)
Q Consensus 282 ~~~~g~~~~A~~~~~~ 297 (686)
+.+.|+.++|..+|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 7777887777777753
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.95 E-value=38 Score=28.09 Aligned_cols=75 Identities=9% Similarity=0.026 Sum_probs=49.4
Q ss_pred CCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHH
Q 005642 36 ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR-----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110 (686)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll 110 (686)
...|+. |-.+=--|+.. .+++..+|..|... -+.-|..-...+-..|++.+|.++|+.-++.+......|.
T Consensus 64 YknD~R--yLklWl~ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 139 (152)
T 4a1g_A 64 YHNDPR--FISYCLKFAEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQ 139 (152)
T ss_dssp GTTCHH--HHHHHHHHHTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred ccCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 345553 44444444443 34577788777654 3445777788888889999999998888776666666666
Q ss_pred HHHH
Q 005642 111 SGFA 114 (686)
Q Consensus 111 ~~~~ 114 (686)
+.+.
T Consensus 140 ~~~~ 143 (152)
T 4a1g_A 140 QQYR 143 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 293
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.19 E-value=2.5e+02 Score=26.92 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHhccCCCCCh---hhHHHHHHHHHhcC-CHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 005642 44 ANRLLQMYMRCGNPTDALLLFDEMPRRNC---FSWNAMIEGFMKLG-HKEKSLQLFNVMPQKNDFSWNMLISGFAK 115 (686)
Q Consensus 44 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~ll~~~~~ 115 (686)
...++.-|...|+.++|...++++..|.- .....+..++-+.. ..+.+..++..+.+.+..+-..+.+++.+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~ 89 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYE 89 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 35677778888888888888888876632 22333333332211 12334555555555566666666555544
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.14 E-value=2.6e+02 Score=31.40 Aligned_cols=51 Identities=4% Similarity=-0.040 Sum_probs=34.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 443 ILSACDHCGLVKEGQKWFDAMKWQYHIDPEIEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
++..|...|.++-+.++.. ..+.++..--.++.+|...|++++|.+.|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566777777776654332 22234444456778888888888888888887
No 295
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.73 E-value=3.5e+02 Score=27.07 Aligned_cols=95 Identities=8% Similarity=0.052 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCcC---HHHHHHHHHHHHccCChhhHHHHHHHHHH----cCCCchH--
Q 005642 204 MWNSMISGYISNNEDTEALLLFHKMRRN--GVLED---ASTLASVLSACSSLGFLEHGKQVHGHACK----VGVIDDV-- 272 (686)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~~~-- 272 (686)
....|...|...|++.+|.+++..+... |..+. ...+...++.|...+++..|..++..+.. ...+|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456788888999999999999988642 22111 23566677788888999988888887642 2223332
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhc
Q 005642 273 IVASALLDTYSKRGMPSDACKLFSEL 298 (686)
Q Consensus 273 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 298 (686)
..+...+..+...+++.+|.+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34566777777888888887777654
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.11 E-value=2.6e+02 Score=31.45 Aligned_cols=127 Identities=11% Similarity=0.031 Sum_probs=68.6
Q ss_pred HHHHHHccCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCChhhH
Q 005642 177 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 256 (686)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 256 (686)
++..+...|..+-|.++....+. ++..-..+..+|...|++++|...|++.- .|+..+...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 55666777888877776655554 44444567788889999999999998752 333222100000 0000
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhHHHHHHHhcc----cCCc----hhHHHHHHHHHhCC
Q 005642 257 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYDT----ILLNTMITVYSSCG 317 (686)
Q Consensus 257 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g 317 (686)
..++.. .+. .......|..++..+-+.+.++.+.++-+... +.|. ..|+.+.++.+..|
T Consensus 884 ~~ll~~-~e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEK-YHH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHH-TTT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCc-ccc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011110 000 11123366777777778888777666554433 2232 24566666655443
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.47 E-value=2e+02 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCC
Q 005642 308 TMITVYSSCGRIEDAKHIFRTMP 330 (686)
Q Consensus 308 ~li~~~~~~g~~~~A~~~~~~~~ 330 (686)
.++.-|...|+.++|...++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34444444444444444444443
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.89 E-value=1e+02 Score=25.48 Aligned_cols=25 Identities=4% Similarity=0.231 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC
Q 005642 76 NAMIEGFMKLGHKEKSLQLFNVMPQ 100 (686)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~ 100 (686)
+.++.-|...|+.++|...++++..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~ 37 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEV 37 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 4455555555555555555555543
No 299
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.35 E-value=2.4e+02 Score=27.80 Aligned_cols=142 Identities=14% Similarity=0.090 Sum_probs=65.1
Q ss_pred HHHHHhcCCcHHHHHHhccCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcChhhH
Q 005642 48 LQMYMRCGNPTDALLLFDEMPRRN---CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKADLAAL 121 (686)
Q Consensus 48 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~ 121 (686)
+...+..|+++-+..+++.-..++ .... ..+...++.|+.+-+.-+++.-.. .+....+.|..++... ..
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g---~~ 93 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG---HT 93 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHT---CH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC---CH
Confidence 334455677776666666433222 1112 223334566666666666554332 2222333444444332 22
Q ss_pred HHHHHHHHHHHHcCCCCChhH--HHHHHHHHHhcCChHHHHHHHhccCCCC---hhhHHHHHHHHHccCCHHHHHHHHhh
Q 005642 122 EYGKQIHSHILVNGLDFDSVL--GSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKMNDARRVFDR 196 (686)
Q Consensus 122 ~~a~~i~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (686)
+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.-...+ ...+ ..+...++.|+.+-+..+++.
T Consensus 94 ~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 94 N----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp H----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred H----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHHHhC
Confidence 2 3344445555443221 1122333445577776666665543211 1111 223334556666666666655
Q ss_pred cC
Q 005642 197 TT 198 (686)
Q Consensus 197 ~~ 198 (686)
..
T Consensus 169 g~ 170 (437)
T 1n11_A 169 DA 170 (437)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.05 E-value=2.1e+02 Score=25.68 Aligned_cols=81 Identities=14% Similarity=-0.020 Sum_probs=40.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC-----cchHHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 005642 78 MIEGFMKLGHKEKSLQLFNVMPQ-----KN-----DFSWNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 147 (686)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~-----~~-----~~~~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l~ 147 (686)
-++.+....++++|.++.++..+ ++ .......++.-... +.-..+..+.+.+ .. .++.......+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~e--R~~~L~~~L~~~l-~~--~~~~~~~r~~v 98 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQ--RREAISSKLSQSI-LS--SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHH--HHHHHHHHHHHHH-HT--CSSHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHH--HHHHHHHHHHHHH-Hh--cCCHHHHHHHH
Confidence 45677778888888887776543 11 11112222222221 2233333343333 22 34445555555
Q ss_pred HHHHhcCChHHHHHHH
Q 005642 148 NLYGKCGDFNSANQVL 163 (686)
Q Consensus 148 ~~~~~~g~~~~A~~~~ 163 (686)
..+.+.|+-+.|.++|
T Consensus 99 ~~L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLF 114 (235)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHCCChhHHHHHH
Confidence 6666667777766666
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.86 E-value=4.9e+02 Score=27.64 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhc
Q 005642 74 SWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKA 116 (686)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~ 116 (686)
.| .+|-.+.|.|.+++|.++.++... .-...|...+..++..
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 45 355567899999999999987754 1224677777777643
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.84 E-value=1.5e+02 Score=25.13 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=9.5
Q ss_pred HHccCCHHHHHHHHhhc
Q 005642 181 YANCGKMNDARRVFDRT 197 (686)
Q Consensus 181 ~~~~g~~~~A~~~~~~~ 197 (686)
.++.|+.+-+..+++..
T Consensus 113 A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHTTCHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 34456666666666554
No 303
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.72 E-value=3.9e+02 Score=26.17 Aligned_cols=90 Identities=8% Similarity=0.049 Sum_probs=50.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHH
Q 005642 470 DPEIEHYSCMVDLFARAGCLNEAVNLIEQMP--FEADVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSS 547 (686)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 547 (686)
.|....+..++.+| ..+++.+...+++... +..|.......-..+.+ --...+.++ ..|-.......++.
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i--~~pYsrIsl~~iA~ 324 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----MLEQNLCRI--IEPYSRVQVAHVAE 324 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HHHHHHHHH--HTTCSEEEHHHHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHH--hHhhceeeHHHHHH
Confidence 45566666666665 4568877777777763 44455432111111100 011223333 35656666777777
Q ss_pred HHhhcCCcchHHHHHHHHHhcC
Q 005642 548 IFATSGEWEKSSLIRDIMREKH 569 (686)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~ 569 (686)
.+.- ..++++..+-+|...|
T Consensus 325 ~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 325 SIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHTC--CHHHHHHHHHHHHHTT
T ss_pred HHCc--CHHHHHHHHHHHHHCC
Confidence 7643 6788888888887654
No 304
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.81 E-value=1.4e+02 Score=30.49 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHh
Q 005642 477 SCMVDLFARAGCLNEAVNLIEQMP-FEA-DVGMWSSILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFA 550 (686)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 550 (686)
..|++...-...++.|...|.++. ..| +...|+.|.-.....|+.-+|.-.|-+.+-.....+.+..++...+.
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 344444444555555666665552 333 23445555555555555555555555555544335555555555443
No 305
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.75 E-value=82 Score=23.66 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=18.6
Q ss_pred CHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChh
Q 005642 318 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 351 (686)
Q Consensus 318 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 351 (686)
..+.|.++++.++.+++.+|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 3445555555555555566666666665445443
No 306
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.73 E-value=3e+02 Score=23.84 Aligned_cols=92 Identities=14% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHcCCCCChhHHHH--HHHHHHh--cCC--------------hHHHHHHHhccC
Q 005642 106 WNMLISGFAKADLAALEYGKQIHSHILVNGLDFDSVLGSS--LVNLYGK--CGD--------------FNSANQVLNMMK 167 (686)
Q Consensus 106 ~~~ll~~~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~--l~~~~~~--~g~--------------~~~A~~~~~~~~ 167 (686)
+..+.+++.....+++.+...+.+.++....+.+...-.. +...+.+ .|+ ++.|+.+++.+.
T Consensus 26 f~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~ 105 (211)
T 3bqo_A 26 CLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIE 105 (211)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHH
Confidence 4455566655555667777777776665333333332111 2222222 222 567888888877
Q ss_pred C-CCh-h-hHH-----HHHHHHHccCCHHHHHHHHhhc
Q 005642 168 E-PDD-F-CLS-----ALISGYANCGKMNDARRVFDRT 197 (686)
Q Consensus 168 ~-~~~-~-~~~-----~li~~~~~~g~~~~A~~~~~~~ 197 (686)
+ .|. . .-. ..+..|.+.|.+++|.++|++.
T Consensus 106 ~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 106 KEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 4 221 0 111 1223356666666666666653
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.19 E-value=2.1e+02 Score=23.16 Aligned_cols=49 Identities=8% Similarity=-0.002 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 005642 335 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 383 (686)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 383 (686)
..-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344555555555556667777777766655555555555555444444
No 308
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=27.04 E-value=3.3e+02 Score=24.08 Aligned_cols=110 Identities=13% Similarity=0.060 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHh-chhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 005642 388 GEQVFARVTIIGLDSDQIISTSLVDFYCK-CGYDALALFNEMRNTGVKPTIITFTAILSACDHCGLVKEGQKWFDAMKWQ 466 (686)
Q Consensus 388 a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 466 (686)
...++..+.+.|+-.|.......+....+ .|.....+-.++...|+.++.. ...+..+......+.|..+.++-...
T Consensus 95 i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I--~~al~~~~~~~e~e~a~~l~~Kk~~~ 172 (221)
T 3d5l_A 95 VEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDI--DDALTQFTPEVQAELAKKLALKLFRR 172 (221)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHH--HHHGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHH--HHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555544455544444 2334455566666777654322 11111111111223445555543322
Q ss_pred cCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC
Q 005642 467 YHIDPEIEHYSCMVDLFARAG-CLNEAVNLIEQM 499 (686)
Q Consensus 467 ~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 499 (686)
..-.++.....-++..+.+.| .++.+..+++..
T Consensus 173 ~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 173 YRNQPERRREQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred ccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 111122444566777777777 455555555555
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.73 E-value=2.4e+02 Score=22.39 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCC
Q 005642 308 TMITVYSSCGRIEDAKHIFRTMP 330 (686)
Q Consensus 308 ~li~~~~~~g~~~~A~~~~~~~~ 330 (686)
.++.-|...|+.++|...++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444444444444444444443
No 310
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.29 E-value=4.5e+02 Score=25.37 Aligned_cols=75 Identities=4% Similarity=0.027 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS--SLELGEQVFARVTIIGLDSDQIISTSLVD 412 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 412 (686)
...++.-|...|+.++|...++++..-... .......+..++.+.+ ..+...+++..+.+.|+-+.......+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 466777778888888888888777532111 1233344444555443 23556677777776666555554444433
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.95 E-value=2e+02 Score=29.47 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCC---hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005642 438 ITFTAILSACDHCGLVKEGQKWFDAMKWQYHI-DPE---IEHYSCMVDLFARAGCLNEAVNLIEQM 499 (686)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (686)
..++.+++.|...+.++.|..+..+.. -... .++ ..-+-.++..+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 567777788888888888888887764 1000 111 112234566667778888887777664
No 312
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.66 E-value=4.4e+02 Score=24.74 Aligned_cols=74 Identities=5% Similarity=0.033 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHhCCCcchhHHHHHH
Q 005642 337 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS--LELGEQVFARVTIIGLDSDQIISTSLV 411 (686)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li 411 (686)
...++.-|...|+.++|.+.++++...... .......+..+..+.++ .+...+++..+.+.|+-+.......+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 456777777788888888888777421111 12233344444444332 455667777777666655544444333
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.63 E-value=1.9e+02 Score=23.46 Aligned_cols=63 Identities=10% Similarity=0.007 Sum_probs=42.4
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 005642 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 226 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345667777766544 344444455666778888888888776667776666778888877754
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.53 E-value=73 Score=28.34 Aligned_cols=87 Identities=9% Similarity=0.099 Sum_probs=56.3
Q ss_pred hHHHHHHHHh-----CCCCCchhhHHHHHHHHHhcCCcHHHHHHhccCCCC-----ChhhHHHHHHHHHhcCCHHHHHHH
Q 005642 25 KQLHLHFLKK-----GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR-----NCFSWNAMIEGFMKLGHKEKSLQL 94 (686)
Q Consensus 25 ~~~~~~~~~~-----g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~ 94 (686)
..+.++..+. ....|+ -|-.+=--|+.. .+++..+|..|... -+.-|......+-..|++.+|.++
T Consensus 97 ~~lLErc~~~F~~~~rYknD~--RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 172 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDV--RYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEV 172 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCH--HHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCH--HHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444443 244555 344554455553 35777788777643 445688888888889999999999
Q ss_pred HhhCCCCCcchHHHHHHHHHh
Q 005642 95 FNVMPQKNDFSWNMLISGFAK 115 (686)
Q Consensus 95 ~~~m~~~~~~~~~~ll~~~~~ 115 (686)
|+.-++........|.+.+..
T Consensus 173 y~~Gi~~~A~P~~rL~~~~~~ 193 (223)
T 4aez_C 173 YQKGKRMKAKPFLRFQQKYQQ 193 (223)
T ss_dssp HHHHHHHTCBSHHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHHHH
Confidence 988877666666666665543
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.46 E-value=97 Score=23.24 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=18.9
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 005642 186 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 219 (686)
Q Consensus 186 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 219 (686)
+.+.|.++++.+++++..+|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 4555555555555555566666666665444433
No 316
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.68 E-value=2.8e+02 Score=22.13 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=41.2
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 005642 227 KMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 227 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 35667777776554 3455555555 67778889988888876667766666677777766543
No 317
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=23.32 E-value=2.9e+02 Score=27.20 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=24.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 005642 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVM 98 (686)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 98 (686)
.+..|.-+...+.+.+++.+|++.+.+.
T Consensus 302 hvYPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 302 HIYPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccceeecchHHHHhhhHHHHHHHhhhh
Confidence 5678999999999999999999998765
No 318
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.87 E-value=1.4e+02 Score=28.95 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCC
Q 005642 306 LNTMITVYSSCGRIEDAKHIFRTMPNKS 333 (686)
Q Consensus 306 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 333 (686)
...++.-|...|+.++|...++++..|+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~ 42 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPK 42 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCch
Confidence 4567777777888888888888777664
No 319
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.62 E-value=2.9e+02 Score=22.54 Aligned_cols=63 Identities=10% Similarity=0.164 Sum_probs=43.7
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 005642 226 HKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 226 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 346677877776654 3455555555 66778999999988877667776666777777777654
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.75 E-value=1.5e+02 Score=27.36 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=7.0
Q ss_pred HHHHHHHCCCCCCHH
Q 005642 356 LFCNMNKLDLRMDKF 370 (686)
Q Consensus 356 ~~~~m~~~g~~p~~~ 370 (686)
+.+.+.+.|..|+..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 334444555555443
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.25 E-value=2.7e+02 Score=22.72 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=40.2
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 005642 226 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 289 (686)
Q Consensus 226 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 289 (686)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345567766655443 345555555567778888888877776667766666777777777654
No 322
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.72 E-value=2.3e+02 Score=19.99 Aligned_cols=62 Identities=10% Similarity=0.184 Sum_probs=40.5
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 005642 226 HKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 288 (686)
Q Consensus 226 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 288 (686)
+.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 345667777766553 4555655554 5567788888887776666666666677777776654
No 323
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.61 E-value=1.8e+02 Score=25.54 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCchhHHHHHHHHhhcCCcchHHH
Q 005642 511 ILRGCVAHGDKGLGRKVAERMIELDPENACAYIQLSSIFATSGEWEKSSL 560 (686)
Q Consensus 511 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 560 (686)
.+-.|.+.|.+++|.+++++..+..|.+...-..|+.+-.+..-+....+
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lq 169 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQ 169 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHH
Confidence 45568899999999999999998766555556667777766666666665
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.58 E-value=4.2e+02 Score=23.00 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=8.8
Q ss_pred CChhhHHHHHHHHHHCC
Q 005642 348 GSPIEALDLFCNMNKLD 364 (686)
Q Consensus 348 g~~~~A~~~~~~m~~~g 364 (686)
.+++.|+-++-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555554
Done!