Query 005643
Match_columns 686
No_of_seqs 602 out of 3938
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 11:32:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 3E-106 6E-111 899.9 50.7 564 36-644 23-592 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 1E-103 2E-108 842.2 39.1 437 164-644 297-736 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 5.1E-98 1E-102 844.6 46.9 569 37-650 165-756 (774)
4 CHL00176 ftsH cell division pr 100.0 1.4E-93 3E-98 819.3 58.0 566 36-645 50-628 (638)
5 PRK10733 hflB ATP-dependent me 100.0 9.3E-89 2E-93 786.9 62.0 563 35-645 29-598 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 3.4E-80 7.4E-85 699.1 49.0 488 108-641 2-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.9E-56 4.2E-61 463.7 23.0 246 163-417 143-394 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.4E-53 3.1E-58 509.8 30.0 309 194-544 1620-1981(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-48 2.6E-53 431.3 22.5 244 163-415 426-674 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 6E-47 1.3E-51 411.7 23.6 243 164-415 504-769 (802)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 1.9E-44 4.2E-49 392.2 20.5 229 165-398 184-414 (802)
12 KOG0727 26S proteasome regulat 100.0 3.8E-43 8.1E-48 348.1 19.5 244 164-416 148-397 (408)
13 KOG0652 26S proteasome regulat 100.0 3.9E-43 8.5E-48 349.3 17.7 244 164-416 164-413 (424)
14 KOG0728 26S proteasome regulat 100.0 6.4E-43 1.4E-47 346.1 18.5 245 164-417 140-390 (404)
15 COG1223 Predicted ATPase (AAA+ 100.0 1.1E-42 2.3E-47 346.5 18.9 238 164-415 114-355 (368)
16 KOG0729 26S proteasome regulat 100.0 5.4E-43 1.2E-47 349.2 16.1 246 163-417 169-420 (435)
17 KOG0726 26S proteasome regulat 100.0 2.2E-43 4.7E-48 355.8 13.2 247 163-418 177-429 (440)
18 KOG0738 AAA+-type ATPase [Post 100.0 2.6E-42 5.7E-47 360.1 20.6 244 164-415 205-469 (491)
19 PF01434 Peptidase_M41: Peptid 100.0 1.9E-41 4.1E-46 342.7 18.7 211 404-639 1-213 (213)
20 KOG0736 Peroxisome assembly fa 100.0 3.7E-41 8.1E-46 374.5 21.3 248 160-415 661-932 (953)
21 PTZ00454 26S protease regulato 100.0 2.2E-40 4.8E-45 362.7 26.0 244 164-416 138-387 (398)
22 PRK03992 proteasome-activating 100.0 1.1E-38 2.4E-43 350.2 25.7 244 164-416 124-373 (389)
23 PTZ00361 26 proteosome regulat 100.0 7.2E-39 1.6E-43 353.0 24.1 245 164-417 176-426 (438)
24 COG0464 SpoVK ATPases of the A 100.0 8.4E-38 1.8E-42 354.1 24.6 244 163-415 234-483 (494)
25 TIGR01243 CDC48 AAA family ATP 100.0 2.6E-37 5.6E-42 364.9 26.1 243 164-415 446-710 (733)
26 KOG0735 AAA+-type ATPase [Post 100.0 7.6E-38 1.6E-42 345.2 19.9 226 164-398 660-888 (952)
27 KOG0739 AAA+-type ATPase [Post 100.0 1.3E-38 2.8E-43 322.3 12.0 226 163-399 125-354 (439)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 6E-37 1.3E-41 342.4 24.9 238 165-416 222-464 (489)
29 KOG0737 AAA+-type ATPase [Post 100.0 3.4E-37 7.5E-42 322.3 20.7 227 163-398 84-314 (386)
30 TIGR01242 26Sp45 26S proteasom 100.0 3.9E-36 8.5E-41 327.9 24.9 243 164-415 115-363 (364)
31 KOG0651 26S proteasome regulat 100.0 1.8E-37 3.8E-42 316.3 12.3 243 164-415 125-373 (388)
32 TIGR03689 pup_AAA proteasome A 100.0 6.6E-34 1.4E-38 317.7 25.5 247 163-418 174-481 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 1.1E-34 2.3E-39 321.0 14.6 234 166-415 180-416 (693)
34 TIGR01243 CDC48 AAA family ATP 100.0 7.7E-31 1.7E-35 309.9 24.5 243 165-416 172-436 (733)
35 KOG0741 AAA+-type ATPase [Post 100.0 1.1E-31 2.4E-36 288.7 14.6 256 164-432 212-504 (744)
36 PLN00020 ribulose bisphosphate 100.0 1.7E-30 3.6E-35 274.8 21.1 223 166-393 110-349 (413)
37 KOG0732 AAA+-type ATPase conta 100.0 1.8E-30 3.8E-35 302.1 17.4 244 164-416 258-526 (1080)
38 KOG0740 AAA+-type ATPase [Post 100.0 1.1E-29 2.4E-34 274.7 15.6 225 164-398 146-374 (428)
39 KOG0736 Peroxisome assembly fa 99.9 5.1E-25 1.1E-29 246.3 16.2 266 183-489 410-697 (953)
40 KOG0742 AAA+-type ATPase [Post 99.9 3.3E-23 7.2E-28 217.8 20.5 233 165-414 349-611 (630)
41 KOG0743 AAA+-type ATPase [Post 99.9 2.1E-23 4.5E-28 224.5 17.3 205 167-387 197-412 (457)
42 PF00004 AAA: ATPase family as 99.9 7.8E-21 1.7E-25 175.7 14.2 129 207-344 1-132 (132)
43 CHL00181 cbbX CbbX; Provisiona 99.9 1.6E-20 3.4E-25 198.3 18.1 221 170-408 22-271 (287)
44 TIGR02881 spore_V_K stage V sp 99.8 3.3E-20 7.1E-25 193.7 19.6 210 169-397 4-240 (261)
45 TIGR02880 cbbX_cfxQ probable R 99.8 6.1E-20 1.3E-24 193.8 17.6 210 171-397 22-255 (284)
46 PF05496 RuvB_N: Holliday junc 99.8 8.2E-19 1.8E-23 175.7 17.6 201 165-392 18-226 (233)
47 TIGR00635 ruvB Holliday juncti 99.8 5E-18 1.1E-22 180.7 19.8 220 168-414 1-228 (305)
48 PRK00080 ruvB Holliday junctio 99.8 6.1E-18 1.3E-22 182.3 20.4 223 165-414 19-249 (328)
49 COG2255 RuvB Holliday junction 99.8 1.5E-17 3.2E-22 169.6 17.9 226 165-417 20-253 (332)
50 KOG0735 AAA+-type ATPase [Post 99.8 1.8E-17 3.9E-22 184.7 19.6 208 201-416 428-649 (952)
51 TIGR02902 spore_lonB ATP-depen 99.8 1.4E-17 3E-22 190.0 18.9 225 163-414 57-331 (531)
52 COG0464 SpoVK ATPases of the A 99.7 4E-17 8.7E-22 185.4 20.5 216 190-416 4-227 (494)
53 KOG0744 AAA+-type ATPase [Post 99.7 1.3E-17 2.9E-22 171.9 14.1 231 169-415 140-414 (423)
54 COG2256 MGS1 ATPase related to 99.7 4.4E-17 9.6E-22 173.2 16.2 202 165-415 18-238 (436)
55 TIGR02639 ClpA ATP-dependent C 99.7 1.2E-16 2.6E-21 189.2 20.3 222 166-416 177-430 (731)
56 TIGR00763 lon ATP-dependent pr 99.7 1.5E-16 3.2E-21 189.4 20.7 171 172-358 321-505 (775)
57 PRK11034 clpA ATP-dependent Cl 99.7 6.1E-16 1.3E-20 181.7 19.3 220 168-416 183-434 (758)
58 PRK14962 DNA polymerase III su 99.7 1.6E-15 3.6E-20 170.1 20.6 204 164-413 7-240 (472)
59 PRK04195 replication factor C 99.7 2.2E-15 4.8E-20 170.6 19.7 208 164-412 7-222 (482)
60 PRK12323 DNA polymerase III su 99.7 1.4E-15 3E-20 172.6 17.8 207 164-410 9-244 (700)
61 PRK14956 DNA polymerase III su 99.7 2.8E-15 6.1E-20 166.3 19.6 209 164-412 11-243 (484)
62 TIGR02928 orc1/cdc6 family rep 99.7 8E-15 1.7E-19 159.9 22.2 221 169-415 13-274 (365)
63 PRK00149 dnaA chromosomal repl 99.7 4.5E-15 9.7E-20 166.8 20.6 221 165-416 116-350 (450)
64 PRK07003 DNA polymerase III su 99.7 3.6E-15 7.7E-20 171.1 19.6 207 164-410 9-239 (830)
65 TIGR00362 DnaA chromosomal rep 99.6 4.2E-15 9.1E-20 164.8 19.5 221 165-415 104-337 (405)
66 PRK13342 recombination factor 99.6 5.6E-15 1.2E-19 164.2 20.2 200 165-415 6-219 (413)
67 PRK14960 DNA polymerase III su 99.6 5.4E-15 1.2E-19 168.1 19.7 204 164-412 8-240 (702)
68 PRK14961 DNA polymerase III su 99.6 7E-15 1.5E-19 160.7 19.9 210 164-413 9-242 (363)
69 PLN03025 replication factor C 99.6 5.4E-15 1.2E-19 158.8 17.1 201 164-411 6-219 (319)
70 PRK06645 DNA polymerase III su 99.6 1.1E-14 2.5E-19 164.1 20.0 212 164-412 14-253 (507)
71 PRK06893 DNA replication initi 99.6 2.5E-14 5.4E-19 146.6 20.0 211 164-412 9-227 (229)
72 PRK14958 DNA polymerase III su 99.6 9.8E-15 2.1E-19 165.4 18.3 204 164-412 9-241 (509)
73 PRK12402 replication factor C 99.6 1.5E-14 3.3E-19 155.7 18.5 208 164-413 8-247 (337)
74 TIGR03345 VI_ClpV1 type VI sec 99.6 2.1E-14 4.5E-19 171.7 21.3 217 166-412 182-428 (852)
75 PRK07994 DNA polymerase III su 99.6 2.3E-14 4.9E-19 165.0 20.7 204 164-412 9-241 (647)
76 PRK14086 dnaA chromosomal repl 99.6 3.5E-14 7.6E-19 161.5 21.7 222 165-416 282-516 (617)
77 PRK14964 DNA polymerase III su 99.6 2.1E-14 4.6E-19 160.9 19.3 203 164-411 6-237 (491)
78 PRK00411 cdc6 cell division co 99.6 5.1E-14 1.1E-18 155.3 22.2 221 169-415 28-282 (394)
79 PRK14949 DNA polymerase III su 99.6 2.9E-14 6.2E-19 166.5 20.6 193 164-392 9-225 (944)
80 KOG2028 ATPase related to the 99.6 1.9E-14 4.1E-19 150.6 17.0 207 164-414 131-367 (554)
81 PRK08691 DNA polymerase III su 99.6 1.4E-14 3.1E-19 166.1 17.6 209 164-412 9-241 (709)
82 PHA02544 44 clamp loader, smal 99.6 4.6E-14 1E-18 151.1 20.7 204 163-410 13-226 (316)
83 TIGR03420 DnaA_homol_Hda DnaA 99.6 5.5E-14 1.2E-18 142.9 19.4 208 165-412 9-225 (226)
84 PRK14088 dnaA chromosomal repl 99.6 3.2E-14 6.8E-19 159.1 18.8 221 165-416 99-333 (440)
85 PRK14963 DNA polymerase III su 99.6 4.6E-14 1E-18 159.7 20.1 203 164-412 7-237 (504)
86 PRK05563 DNA polymerase III su 99.6 5.4E-14 1.2E-18 161.4 20.5 204 164-412 9-241 (559)
87 PRK07940 DNA polymerase III su 99.6 3E-14 6.5E-19 156.6 17.5 191 168-388 2-215 (394)
88 PRK12422 chromosomal replicati 99.6 1.4E-13 3.1E-18 153.7 22.2 227 165-416 105-344 (445)
89 PRK14951 DNA polymerase III su 99.6 5.7E-14 1.2E-18 161.3 19.5 209 164-412 9-246 (618)
90 PRK13341 recombination factor 99.6 5.5E-14 1.2E-18 164.6 19.5 210 164-415 21-247 (725)
91 PRK07764 DNA polymerase III su 99.6 7.8E-14 1.7E-18 165.2 20.5 209 164-411 8-242 (824)
92 PRK08084 DNA replication initi 99.6 1.7E-13 3.8E-18 141.0 19.8 208 165-412 16-233 (235)
93 PRK14952 DNA polymerase III su 99.6 1E-13 2.2E-18 158.7 19.7 210 164-412 6-241 (584)
94 KOG2004 Mitochondrial ATP-depe 99.6 2.1E-14 4.6E-19 160.9 13.5 170 172-359 412-597 (906)
95 PRK14969 DNA polymerase III su 99.6 6.3E-14 1.4E-18 159.7 17.8 209 164-412 9-241 (527)
96 PRK05342 clpX ATP-dependent pr 99.6 1.2E-13 2.5E-18 152.6 19.1 187 167-355 66-322 (412)
97 TIGR02397 dnaX_nterm DNA polym 99.6 1.3E-13 2.8E-18 149.8 19.1 205 164-413 7-240 (355)
98 CHL00095 clpC Clp protease ATP 99.5 1.9E-13 4.1E-18 163.9 21.6 195 168-393 176-399 (821)
99 PRK14959 DNA polymerase III su 99.5 1.5E-13 3.2E-18 157.1 19.4 204 164-412 9-241 (624)
100 PRK10865 protein disaggregatio 99.5 5.8E-14 1.2E-18 168.3 16.5 165 166-360 173-356 (857)
101 PRK14957 DNA polymerase III su 99.5 2.3E-13 5E-18 154.5 20.3 204 164-412 9-241 (546)
102 COG0466 Lon ATP-dependent Lon 99.5 1.1E-13 2.3E-18 156.3 17.3 172 172-359 324-509 (782)
103 TIGR02640 gas_vesic_GvpN gas v 99.5 3.3E-13 7.1E-18 141.2 19.4 210 178-416 6-258 (262)
104 KOG0989 Replication factor C, 99.5 1.3E-13 2.8E-18 142.3 15.9 191 163-392 28-235 (346)
105 PRK07133 DNA polymerase III su 99.5 2.6E-13 5.6E-18 157.2 19.8 209 164-412 11-240 (725)
106 PRK08903 DnaA regulatory inact 99.5 5.5E-13 1.2E-17 136.1 19.7 202 164-413 11-224 (227)
107 PRK09111 DNA polymerase III su 99.5 2.6E-13 5.7E-18 156.1 19.0 210 164-413 17-255 (598)
108 PRK08727 hypothetical protein; 99.5 9.5E-13 2.1E-17 135.3 21.2 209 164-414 12-230 (233)
109 PRK10787 DNA-binding ATP-depen 99.5 1.8E-13 4E-18 162.0 18.1 171 172-359 323-507 (784)
110 PRK14087 dnaA chromosomal repl 99.5 3.8E-13 8.3E-18 150.6 19.4 220 167-415 111-348 (450)
111 PTZ00112 origin recognition co 99.5 5E-13 1.1E-17 154.0 20.6 189 205-416 782-1007(1164)
112 TIGR03346 chaperone_ClpB ATP-d 99.5 2.1E-13 4.6E-18 163.9 18.4 202 166-397 168-398 (852)
113 PRK11034 clpA ATP-dependent Cl 99.5 2.1E-13 4.6E-18 160.4 17.6 173 172-359 459-667 (758)
114 PRK14970 DNA polymerase III su 99.5 4.2E-13 9.1E-18 146.9 18.7 210 164-413 10-231 (367)
115 PRK14965 DNA polymerase III su 99.5 2.6E-13 5.5E-18 156.4 17.6 203 164-411 9-240 (576)
116 PRK08451 DNA polymerase III su 99.5 4.1E-13 8.8E-18 151.9 18.2 203 164-411 7-238 (535)
117 PRK05896 DNA polymerase III su 99.5 4.3E-13 9.2E-18 152.7 18.1 203 164-411 9-240 (605)
118 PRK14953 DNA polymerase III su 99.5 6.8E-13 1.5E-17 149.7 19.7 209 164-412 9-241 (486)
119 PRK13407 bchI magnesium chelat 99.5 2E-13 4.3E-18 146.8 14.1 229 166-419 3-310 (334)
120 PRK06620 hypothetical protein; 99.5 1.1E-12 2.3E-17 133.2 18.7 199 164-412 9-213 (214)
121 PRK06647 DNA polymerase III su 99.5 8.9E-13 1.9E-17 151.0 19.9 209 164-412 9-241 (563)
122 TIGR02639 ClpA ATP-dependent C 99.5 4.6E-13 1E-17 158.7 17.8 173 171-359 454-663 (731)
123 COG1224 TIP49 DNA helicase TIP 99.5 1.7E-12 3.7E-17 136.1 19.6 97 315-414 322-431 (450)
124 PRK14955 DNA polymerase III su 99.5 6.4E-13 1.4E-17 147.0 17.5 213 164-412 9-254 (397)
125 TIGR00382 clpX endopeptidase C 99.5 8.5E-13 1.9E-17 145.2 17.8 186 169-356 74-329 (413)
126 PRK06305 DNA polymerase III su 99.5 1.9E-12 4.1E-17 145.2 20.6 205 164-413 10-244 (451)
127 CHL00081 chlI Mg-protoporyphyr 99.5 1E-12 2.3E-17 141.6 17.7 231 165-421 11-328 (350)
128 PRK00440 rfc replication facto 99.5 1.1E-12 2.4E-17 140.0 17.9 203 164-413 10-224 (319)
129 COG0593 DnaA ATPase involved i 99.5 3.8E-12 8.2E-17 138.8 21.1 223 164-416 80-314 (408)
130 PF00308 Bac_DnaA: Bacterial d 99.5 1.6E-12 3.5E-17 132.4 17.0 201 166-395 3-216 (219)
131 TIGR00390 hslU ATP-dependent p 99.5 2E-12 4.3E-17 140.8 18.5 181 172-355 13-343 (441)
132 PRK05642 DNA replication initi 99.5 7.3E-12 1.6E-16 128.9 21.8 212 164-412 12-232 (234)
133 PRK14948 DNA polymerase III su 99.5 2.4E-12 5.3E-17 149.0 19.7 207 164-411 9-241 (620)
134 PRK14950 DNA polymerase III su 99.4 4.2E-12 9.2E-17 146.9 20.0 209 164-412 9-242 (585)
135 PRK14954 DNA polymerase III su 99.4 4.8E-12 1E-16 146.0 20.2 213 164-412 9-254 (620)
136 COG2812 DnaX DNA polymerase II 99.4 1.3E-12 2.9E-17 146.1 15.0 207 164-410 9-239 (515)
137 PF05673 DUF815: Protein of un 99.4 4.8E-12 1E-16 128.8 17.5 192 165-389 21-243 (249)
138 COG1474 CDC6 Cdc6-related prot 99.4 5.6E-12 1.2E-16 137.5 19.2 190 203-414 41-264 (366)
139 PRK05201 hslU ATP-dependent pr 99.4 6.5E-13 1.4E-17 144.7 11.7 181 172-355 16-345 (443)
140 TIGR01650 PD_CobS cobaltochela 99.4 2.4E-12 5.2E-17 136.9 15.7 143 204-359 64-234 (327)
141 TIGR02903 spore_lon_C ATP-depe 99.4 1.1E-11 2.5E-16 143.8 21.8 223 165-414 148-429 (615)
142 TIGR02030 BchI-ChlI magnesium 99.4 9.8E-12 2.1E-16 134.0 17.2 228 169-420 2-314 (337)
143 TIGR02442 Cob-chelat-sub cobal 99.4 8.8E-12 1.9E-16 145.5 17.3 225 169-420 2-309 (633)
144 PRK14971 DNA polymerase III su 99.4 2.6E-11 5.6E-16 140.5 19.9 204 164-412 10-243 (614)
145 TIGR03346 chaperone_ClpB ATP-d 99.3 1.9E-11 4.2E-16 147.2 19.0 174 171-359 565-777 (852)
146 PHA02244 ATPase-like protein 99.3 2.8E-11 6.1E-16 130.2 17.4 133 205-354 120-269 (383)
147 TIGR03345 VI_ClpV1 type VI sec 99.3 2.3E-11 5E-16 145.7 17.4 172 171-359 566-781 (852)
148 COG0714 MoxR-like ATPases [Gen 99.3 3.4E-11 7.5E-16 130.0 16.9 140 205-356 44-201 (329)
149 cd00009 AAA The AAA+ (ATPases 99.3 3.3E-11 7.2E-16 111.5 14.0 137 181-343 5-150 (151)
150 PRK10865 protein disaggregatio 99.3 4.5E-11 9.7E-16 143.7 18.7 175 170-359 567-780 (857)
151 CHL00095 clpC Clp protease ATP 99.3 4.2E-11 9.2E-16 143.8 17.0 173 171-359 509-733 (821)
152 KOG1942 DNA helicase, TBP-inte 99.3 1.4E-10 3E-15 118.9 17.7 97 315-414 327-437 (456)
153 PRK09087 hypothetical protein; 99.3 1.3E-10 2.7E-15 119.0 17.4 203 164-415 14-222 (226)
154 PRK09112 DNA polymerase III su 99.2 2.7E-10 5.8E-15 123.8 18.3 187 166-389 18-242 (351)
155 PRK13531 regulatory ATPase Rav 99.2 3E-10 6.5E-15 126.3 18.9 200 204-417 39-285 (498)
156 COG3829 RocR Transcriptional r 99.2 3.1E-11 6.6E-16 133.6 10.3 216 165-409 239-491 (560)
157 PRK07471 DNA polymerase III su 99.2 3.7E-10 8E-15 123.3 18.5 183 166-388 14-239 (365)
158 COG0542 clpA ATP-binding subun 99.2 5E-11 1.1E-15 138.3 12.0 170 171-359 491-706 (786)
159 PF06068 TIP49: TIP49 C-termin 99.2 1.8E-10 3.9E-15 123.0 14.4 69 166-241 19-89 (398)
160 TIGR00678 holB DNA polymerase 99.2 3.3E-10 7.2E-15 112.4 15.5 144 202-378 12-183 (188)
161 PF05621 TniB: Bacterial TniB 99.2 2.9E-10 6.2E-15 119.2 15.4 213 174-410 37-284 (302)
162 PF07728 AAA_5: AAA domain (dy 99.2 4.2E-11 9.2E-16 112.6 8.2 118 206-336 1-139 (139)
163 smart00350 MCM minichromosome 99.2 1.7E-10 3.7E-15 131.6 14.7 196 203-414 235-503 (509)
164 COG3604 FhlA Transcriptional r 99.2 9.2E-11 2E-15 128.3 11.6 209 164-395 216-456 (550)
165 TIGR02031 BchD-ChlD magnesium 99.2 3.2E-10 7E-15 131.2 16.8 201 204-420 16-263 (589)
166 PRK15424 propionate catabolism 99.2 1.7E-10 3.8E-15 131.3 14.2 216 167-408 215-478 (538)
167 TIGR03015 pepcterm_ATPase puta 99.2 1.2E-09 2.5E-14 114.1 18.9 189 205-415 44-266 (269)
168 TIGR00602 rad24 checkpoint pro 99.2 7.4E-10 1.6E-14 128.0 18.1 257 164-457 77-390 (637)
169 smart00382 AAA ATPases associa 99.2 1.9E-10 4E-15 105.3 10.7 122 204-345 2-147 (148)
170 PRK05564 DNA polymerase III su 99.2 8.1E-10 1.8E-14 118.5 16.8 169 169-378 2-182 (313)
171 KOG1969 DNA replication checkp 99.1 1.5E-09 3.1E-14 123.0 18.7 214 164-399 264-519 (877)
172 COG2607 Predicted ATPase (AAA+ 99.1 2.3E-09 4.9E-14 107.8 17.9 169 164-364 53-245 (287)
173 TIGR00368 Mg chelatase-related 99.1 5.2E-10 1.1E-14 126.6 15.0 216 168-413 189-497 (499)
174 TIGR00764 lon_rel lon-related 99.1 7E-10 1.5E-14 128.6 15.9 103 311-415 266-391 (608)
175 COG0470 HolB ATPase involved i 99.1 2.2E-09 4.8E-14 114.8 18.6 155 203-396 23-205 (325)
176 PRK07399 DNA polymerase III su 99.1 1.9E-09 4.1E-14 115.6 17.8 182 169-389 2-223 (314)
177 KOG0741 AAA+-type ATPase [Post 99.1 8.3E-10 1.8E-14 120.8 14.9 144 203-356 537-684 (744)
178 TIGR02329 propionate_PrpR prop 99.1 5.5E-10 1.2E-14 127.2 14.0 218 167-409 208-464 (526)
179 PF07724 AAA_2: AAA domain (Cd 99.1 1.7E-10 3.8E-15 113.0 8.5 121 203-324 2-131 (171)
180 KOG0991 Replication factor C, 99.1 3.2E-10 6.8E-15 113.2 10.1 207 163-413 19-235 (333)
181 PRK11331 5-methylcytosine-spec 99.1 7.3E-10 1.6E-14 122.3 13.9 149 170-344 174-357 (459)
182 PRK10820 DNA-binding transcrip 99.1 1E-09 2.2E-14 125.6 15.4 212 166-408 199-447 (520)
183 COG1219 ClpX ATP-dependent pro 99.1 4.3E-10 9.3E-15 116.8 10.5 146 172-322 62-228 (408)
184 COG2204 AtoC Response regulato 99.1 1.1E-09 2.4E-14 121.3 14.1 213 167-408 137-384 (464)
185 COG1221 PspF Transcriptional r 99.1 6.5E-10 1.4E-14 121.2 11.8 207 165-396 72-310 (403)
186 PRK05022 anaerobic nitric oxid 99.1 3.3E-09 7.1E-14 121.3 17.4 201 169-396 185-421 (509)
187 PRK04132 replication factor C 99.1 3.3E-09 7.2E-14 125.6 17.7 170 207-411 567-750 (846)
188 PRK08058 DNA polymerase III su 99.0 3.8E-09 8.2E-14 114.2 16.1 149 169-356 3-180 (329)
189 PRK11608 pspF phage shock prot 99.0 3.3E-09 7.2E-14 114.5 15.0 199 170-395 5-240 (326)
190 TIGR01817 nifA Nif-specific re 99.0 2.9E-09 6.2E-14 122.5 15.4 216 164-408 189-438 (534)
191 COG1220 HslU ATP-dependent pro 99.0 1.7E-09 3.6E-14 113.2 11.8 89 264-355 252-346 (444)
192 PRK11388 DNA-binding transcrip 99.0 5.6E-09 1.2E-13 122.6 17.4 215 167-411 321-567 (638)
193 PRK05707 DNA polymerase III su 99.0 6.2E-09 1.4E-13 112.3 16.3 149 201-378 19-195 (328)
194 PRK15429 formate hydrogenlyase 99.0 5E-09 1.1E-13 123.9 16.9 205 167-395 372-609 (686)
195 smart00763 AAA_PrkA PrkA AAA d 99.0 3.3E-09 7.2E-14 114.3 13.8 173 168-360 47-329 (361)
196 TIGR02974 phageshock_pspF psp 99.0 3.7E-09 8E-14 114.2 14.3 177 203-395 21-233 (329)
197 PF07726 AAA_3: ATPase family 99.0 9.5E-11 2.1E-15 108.2 1.7 119 206-336 1-129 (131)
198 COG0542 clpA ATP-binding subun 99.0 7.1E-09 1.5E-13 120.7 17.0 162 167-357 166-345 (786)
199 PRK09862 putative ATP-dependen 99.0 9.2E-09 2E-13 116.2 15.5 218 168-414 188-491 (506)
200 PF01078 Mg_chelatase: Magnesi 98.9 8.3E-10 1.8E-14 110.3 4.5 127 169-322 1-158 (206)
201 PRK08116 hypothetical protein; 98.9 4.3E-09 9.4E-14 110.5 10.1 155 167-347 81-251 (268)
202 PF00158 Sigma54_activat: Sigm 98.9 1.1E-08 2.3E-13 100.1 11.8 118 203-336 21-154 (168)
203 COG1239 ChlI Mg-chelatase subu 98.9 2.4E-08 5.3E-13 108.2 15.1 168 167-359 13-233 (423)
204 KOG2680 DNA helicase TIP49, TB 98.9 6.1E-08 1.3E-12 100.1 16.9 91 323-416 339-430 (454)
205 PTZ00111 DNA replication licen 98.9 3.1E-08 6.8E-13 117.0 16.0 137 202-353 490-652 (915)
206 KOG0745 Putative ATP-dependent 98.9 5E-09 1.1E-13 112.7 8.6 141 205-347 227-388 (564)
207 TIGR02915 PEP_resp_reg putativ 98.8 2.1E-08 4.5E-13 112.6 13.0 211 169-408 137-382 (445)
208 KOG0990 Replication factor C, 98.8 4.7E-08 1E-12 102.1 13.3 191 163-395 33-237 (360)
209 PF13177 DNA_pol3_delta2: DNA 98.8 4.4E-08 9.6E-13 95.2 12.1 118 202-345 17-161 (162)
210 PRK06964 DNA polymerase III su 98.8 6.1E-08 1.3E-12 104.9 14.0 133 201-357 18-203 (342)
211 KOG1514 Origin recognition com 98.8 1.4E-07 3E-12 107.2 17.1 193 205-416 423-656 (767)
212 PRK10923 glnG nitrogen regulat 98.8 5.9E-08 1.3E-12 109.7 14.4 210 169-409 136-382 (469)
213 PRK13765 ATP-dependent proteas 98.8 5.4E-08 1.2E-12 112.9 13.6 102 311-414 275-399 (637)
214 PRK11361 acetoacetate metaboli 98.7 1.4E-07 3E-12 106.3 15.7 187 204-409 166-387 (457)
215 PRK07952 DNA replication prote 98.7 7.9E-08 1.7E-12 99.4 12.5 117 165-295 66-190 (244)
216 PRK08769 DNA polymerase III su 98.7 3.7E-07 8E-12 98.0 17.6 131 202-356 24-183 (319)
217 COG0606 Predicted ATPase with 98.7 3.6E-08 7.9E-13 108.3 9.7 219 167-413 175-483 (490)
218 PRK08181 transposase; Validate 98.7 9.1E-08 2E-12 100.4 12.2 86 204-296 106-196 (269)
219 PRK06871 DNA polymerase III su 98.7 4.9E-07 1.1E-11 97.2 17.3 132 202-357 22-178 (325)
220 PRK08939 primosomal protein Dn 98.7 7.7E-08 1.7E-12 102.9 10.8 101 167-274 123-229 (306)
221 PRK12377 putative replication 98.7 1.3E-07 2.8E-12 98.1 12.1 117 165-295 68-191 (248)
222 PRK07993 DNA polymerase III su 98.7 4.4E-07 9.6E-12 98.2 16.8 130 201-356 21-178 (334)
223 PRK13406 bchD magnesium chelat 98.7 3.1E-07 6.7E-12 105.9 16.4 201 205-420 26-255 (584)
224 KOG1051 Chaperone HSP104 and r 98.7 7.8E-08 1.7E-12 113.5 11.6 138 172-323 563-711 (898)
225 TIGR01818 ntrC nitrogen regula 98.7 2.4E-07 5.3E-12 104.5 14.0 188 204-412 157-381 (463)
226 PRK15115 response regulator Gl 98.6 4.9E-07 1.1E-11 101.5 16.1 187 204-411 157-380 (444)
227 PRK06526 transposase; Provisio 98.6 6.1E-08 1.3E-12 101.0 7.7 86 204-296 98-188 (254)
228 PRK06090 DNA polymerase III su 98.6 1.2E-06 2.7E-11 93.9 15.7 130 201-356 22-178 (319)
229 COG1484 DnaC DNA replication p 98.6 3.3E-07 7.2E-12 95.5 10.6 98 167-274 75-179 (254)
230 PRK06921 hypothetical protein; 98.5 6.1E-07 1.3E-11 94.2 12.4 69 203-273 116-188 (266)
231 PRK06835 DNA replication prote 98.5 2.2E-07 4.8E-12 100.2 9.1 69 204-274 183-258 (329)
232 PRK08699 DNA polymerase III su 98.5 5.2E-07 1.1E-11 97.3 11.9 131 202-356 19-183 (325)
233 PF03215 Rad17: Rad17 cell cyc 98.5 1.9E-06 4.1E-11 98.2 17.0 204 164-396 12-269 (519)
234 PRK10365 transcriptional regul 98.5 1E-06 2.3E-11 98.6 14.6 187 204-411 162-385 (441)
235 KOG2227 Pre-initiation complex 98.5 3.8E-06 8.2E-11 92.0 17.8 201 172-399 151-383 (529)
236 PF13173 AAA_14: AAA domain 98.5 1.1E-06 2.3E-11 81.9 11.7 70 205-275 3-74 (128)
237 PF01637 Arch_ATPase: Archaeal 98.5 9.1E-07 2E-11 89.2 11.7 166 203-385 19-232 (234)
238 PRK09183 transposase/IS protei 98.4 6.5E-07 1.4E-11 93.6 9.4 72 203-275 101-177 (259)
239 PF14532 Sigma54_activ_2: Sigm 98.4 6.3E-07 1.4E-11 84.5 7.4 59 204-275 21-82 (138)
240 PF01695 IstB_IS21: IstB-like 98.4 2.7E-07 5.8E-12 91.2 5.0 70 203-274 46-120 (178)
241 KOG2035 Replication factor C, 98.4 6.9E-06 1.5E-10 84.6 15.0 178 165-378 7-220 (351)
242 PF12775 AAA_7: P-loop contain 98.4 3.5E-06 7.6E-11 88.8 13.1 141 204-358 33-193 (272)
243 PF13401 AAA_22: AAA domain; P 98.3 3.6E-06 7.7E-11 77.7 9.9 85 204-297 4-113 (131)
244 COG3283 TyrR Transcriptional r 98.3 2.6E-06 5.6E-11 90.3 9.7 207 166-395 199-432 (511)
245 PF03969 AFG1_ATPase: AFG1-lik 98.2 5.8E-06 1.3E-10 90.4 10.3 140 201-372 59-207 (362)
246 cd01120 RecA-like_NTPases RecA 98.2 3.4E-05 7.4E-10 73.1 13.8 70 207-276 2-99 (165)
247 COG1241 MCM2 Predicted ATPase 98.2 5.3E-06 1.1E-10 96.3 9.2 196 203-414 318-591 (682)
248 PF12774 AAA_6: Hydrolytic ATP 98.2 1.9E-05 4.1E-10 81.2 12.3 135 204-354 32-176 (231)
249 KOG1970 Checkpoint RAD17-RFC c 98.1 9.9E-05 2.1E-09 82.5 17.8 204 165-395 76-320 (634)
250 PRK05917 DNA polymerase III su 98.1 4.7E-05 1E-09 80.5 14.4 120 202-345 17-154 (290)
251 TIGR02237 recomb_radB DNA repa 98.1 2.3E-05 4.9E-10 78.9 11.1 77 200-276 8-111 (209)
252 COG3284 AcoR Transcriptional a 98.1 5.5E-06 1.2E-10 94.0 7.1 187 204-411 336-553 (606)
253 KOG0480 DNA replication licens 98.1 7.5E-06 1.6E-10 92.3 8.0 230 168-413 342-641 (764)
254 PF05729 NACHT: NACHT domain 98.1 6.2E-05 1.3E-09 71.8 13.3 139 205-360 1-165 (166)
255 PF00493 MCM: MCM2/3/5 family 98.1 2.9E-06 6.3E-11 91.9 4.5 197 202-414 55-325 (331)
256 PF00931 NB-ARC: NB-ARC domain 98.1 0.00017 3.8E-09 75.8 17.6 171 181-387 3-202 (287)
257 PRK07276 DNA polymerase III su 98.0 0.00026 5.7E-09 75.1 17.3 127 202-355 22-172 (290)
258 cd01124 KaiC KaiC is a circadi 98.0 6.5E-05 1.4E-09 73.8 11.8 89 207-298 2-128 (187)
259 PRK05818 DNA polymerase III su 97.9 0.00034 7.4E-09 72.7 16.4 120 202-345 5-147 (261)
260 COG3267 ExeA Type II secretory 97.9 0.00054 1.2E-08 70.4 17.4 182 206-408 53-266 (269)
261 KOG0478 DNA replication licens 97.9 0.00025 5.5E-09 80.9 16.4 133 202-349 460-617 (804)
262 PLN03210 Resistant to P. syrin 97.9 0.0001 2.2E-09 92.4 14.9 176 166-380 179-389 (1153)
263 TIGR02688 conserved hypothetic 97.9 0.00037 8E-09 76.9 16.8 114 181-322 197-314 (449)
264 PRK07132 DNA polymerase III su 97.9 0.00043 9.4E-09 73.9 16.7 127 202-356 16-160 (299)
265 PRK11823 DNA repair protein Ra 97.9 6.2E-05 1.3E-09 84.8 10.5 77 200-276 76-170 (446)
266 cd01121 Sms Sms (bacterial rad 97.9 6.9E-05 1.5E-09 82.4 10.5 77 200-276 78-172 (372)
267 PF00910 RNA_helicase: RNA hel 97.8 2.4E-05 5.3E-10 70.6 5.4 23 207-229 1-23 (107)
268 PRK09361 radB DNA repair and r 97.8 0.00012 2.7E-09 74.5 10.6 76 200-276 19-121 (225)
269 TIGR01618 phage_P_loop phage n 97.7 0.00014 3E-09 74.2 8.8 72 203-276 11-95 (220)
270 TIGR02012 tigrfam_recA protein 97.7 0.00024 5.3E-09 76.3 11.0 78 200-277 51-148 (321)
271 KOG1968 Replication factor C, 97.7 0.00015 3.2E-09 86.9 10.1 204 165-394 314-535 (871)
272 PHA00729 NTP-binding motif con 97.7 7E-05 1.5E-09 76.4 6.4 26 205-230 18-43 (226)
273 KOG2170 ATPase of the AAA+ sup 97.7 0.00029 6.3E-09 73.7 10.7 98 172-275 83-191 (344)
274 COG5245 DYN1 Dynein, heavy cha 97.7 0.00039 8.5E-09 84.4 12.9 184 201-393 1491-1714(3164)
275 cd01394 radB RadB. The archaea 97.7 0.00048 1E-08 69.8 12.2 40 200-239 15-57 (218)
276 PF05707 Zot: Zonular occluden 97.7 5.6E-05 1.2E-09 75.5 5.3 122 207-345 3-146 (193)
277 PF13207 AAA_17: AAA domain; P 97.6 4.4E-05 9.6E-10 69.6 3.9 30 207-236 2-31 (121)
278 PRK08533 flagellar accessory p 97.6 0.0007 1.5E-08 69.7 13.0 76 200-275 20-130 (230)
279 COG1485 Predicted ATPase [Gene 97.6 0.00032 6.9E-09 75.1 10.3 162 176-369 30-207 (367)
280 PRK06067 flagellar accessory p 97.6 0.0004 8.6E-09 71.4 10.7 40 200-239 21-63 (234)
281 KOG0482 DNA replication licens 97.6 0.00055 1.2E-08 75.8 11.9 227 172-415 343-638 (721)
282 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00055 1.2E-08 70.0 10.8 100 200-299 15-155 (235)
283 PF06745 KaiC: KaiC; InterPro 97.5 0.00076 1.7E-08 68.8 11.7 98 199-298 14-149 (226)
284 TIGR00416 sms DNA repair prote 97.5 0.00042 9.1E-09 78.3 10.6 77 200-276 90-184 (454)
285 cd00983 recA RecA is a bacter 97.5 0.00058 1.3E-08 73.5 10.9 78 200-277 51-148 (325)
286 cd01393 recA_like RecA is a b 97.5 0.0006 1.3E-08 69.3 10.5 101 200-300 15-155 (226)
287 COG4650 RtcR Sigma54-dependent 97.5 0.0006 1.3E-08 70.9 10.3 76 200-275 204-295 (531)
288 PRK00131 aroK shikimate kinase 97.5 0.0001 2.2E-09 71.3 4.5 33 203-235 3-35 (175)
289 COG1373 Predicted ATPase (AAA+ 97.5 0.0063 1.4E-07 67.7 19.2 123 206-352 39-161 (398)
290 KOG2383 Predicted ATPase [Gene 97.5 0.00068 1.5E-08 73.4 10.8 159 202-393 112-298 (467)
291 PRK08118 topology modulation p 97.5 0.00024 5.2E-09 69.4 6.7 33 206-238 3-35 (167)
292 PF05272 VirE: Virulence-assoc 97.4 0.0011 2.5E-08 66.5 11.1 120 200-344 48-169 (198)
293 PF06309 Torsin: Torsin; Inte 97.4 0.00083 1.8E-08 62.3 9.3 51 172-228 26-77 (127)
294 PRK05800 cobU adenosylcobinami 97.4 0.0016 3.5E-08 63.8 11.3 90 206-298 3-114 (170)
295 KOG0477 DNA replication licens 97.4 0.00059 1.3E-08 77.1 9.0 33 202-234 480-512 (854)
296 COG1618 Predicted nucleotide k 97.3 0.002 4.4E-08 61.9 10.8 27 202-228 3-29 (179)
297 PF14516 AAA_35: AAA-like doma 97.3 0.029 6.2E-07 61.0 21.2 173 204-390 31-242 (331)
298 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0022 4.7E-08 66.2 12.0 41 199-239 16-59 (237)
299 cd03283 ABC_MutS-like MutS-lik 97.3 0.0018 3.9E-08 65.1 10.9 104 205-326 26-151 (199)
300 PF07693 KAP_NTPase: KAP famil 97.3 0.011 2.4E-07 63.4 17.8 28 202-229 18-45 (325)
301 TIGR02858 spore_III_AA stage I 97.3 0.00091 2E-08 70.4 9.1 112 205-343 112-256 (270)
302 PRK14722 flhF flagellar biosyn 97.3 0.00068 1.5E-08 74.4 8.4 111 202-331 135-267 (374)
303 PRK09354 recA recombinase A; P 97.2 0.0017 3.7E-08 70.6 10.5 77 200-276 56-152 (349)
304 COG5271 MDN1 AAA ATPase contai 97.2 0.0013 2.9E-08 80.7 10.2 143 203-359 1542-1704(4600)
305 KOG1051 Chaperone HSP104 and r 97.2 0.0039 8.4E-08 74.6 14.2 159 170-357 185-362 (898)
306 PRK15455 PrkA family serine pr 97.2 0.00027 5.9E-09 80.5 4.4 64 168-237 73-137 (644)
307 PHA02624 large T antigen; Prov 97.2 0.00053 1.1E-08 78.5 6.5 128 200-343 427-560 (647)
308 KOG2228 Origin recognition com 97.2 0.0024 5.1E-08 68.0 10.7 136 204-358 49-219 (408)
309 KOG2543 Origin recognition com 97.2 0.0049 1.1E-07 66.6 13.1 139 202-359 28-194 (438)
310 PRK07261 topology modulation p 97.2 0.00077 1.7E-08 66.1 6.7 34 206-239 2-35 (171)
311 PRK13947 shikimate kinase; Pro 97.2 0.00036 7.8E-09 67.7 4.3 31 206-236 3-33 (171)
312 cd00984 DnaB_C DnaB helicase C 97.2 0.0025 5.4E-08 65.5 10.7 40 200-239 9-52 (242)
313 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0044 9.6E-08 63.1 12.3 98 200-298 12-142 (224)
314 PRK05973 replicative DNA helic 97.2 0.004 8.6E-08 64.3 11.9 40 200-239 60-102 (237)
315 cd01122 GP4d_helicase GP4d_hel 97.1 0.0027 5.8E-08 66.5 10.7 39 200-238 26-68 (271)
316 PRK03839 putative kinase; Prov 97.1 0.00039 8.5E-09 68.3 3.9 31 206-236 2-32 (180)
317 PRK04296 thymidine kinase; Pro 97.1 0.0026 5.6E-08 63.4 9.8 69 206-274 4-90 (190)
318 PF13191 AAA_16: AAA ATPase do 97.1 0.00037 8E-09 67.9 3.6 54 181-240 7-63 (185)
319 cd00464 SK Shikimate kinase (S 97.1 0.00045 9.8E-09 65.6 4.0 31 206-236 1-31 (154)
320 PRK00625 shikimate kinase; Pro 97.1 0.00048 1E-08 67.8 4.3 31 206-236 2-32 (173)
321 PHA02774 E1; Provisional 97.1 0.0035 7.5E-08 71.7 11.5 38 200-237 430-468 (613)
322 PF13671 AAA_33: AAA domain; P 97.1 0.00039 8.4E-09 65.2 3.4 26 207-232 2-27 (143)
323 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0054 1.2E-07 64.2 12.2 39 200-238 32-73 (259)
324 PRK06762 hypothetical protein; 97.0 0.0015 3.2E-08 63.2 7.0 37 204-240 2-38 (166)
325 KOG3347 Predicted nucleotide k 97.0 0.00048 1E-08 65.2 3.3 32 205-236 8-39 (176)
326 cd00544 CobU Adenosylcobinamid 97.0 0.0074 1.6E-07 59.2 11.7 90 207-298 2-114 (169)
327 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00056 1.2E-08 67.2 3.9 34 207-242 2-35 (183)
328 PF00437 T2SE: Type II/IV secr 97.0 0.00075 1.6E-08 70.8 5.1 98 165-272 98-207 (270)
329 PRK04301 radA DNA repair and r 97.0 0.0034 7.4E-08 67.7 10.2 40 200-239 98-146 (317)
330 PRK13949 shikimate kinase; Pro 97.0 0.00063 1.4E-08 66.6 4.0 32 205-236 2-33 (169)
331 PLN02200 adenylate kinase fami 97.0 0.00091 2E-08 69.0 5.3 40 201-242 40-79 (234)
332 cd01128 rho_factor Transcripti 97.0 0.0023 5E-08 66.6 8.3 27 204-230 16-42 (249)
333 PF00448 SRP54: SRP54-type pro 97.0 0.0032 6.9E-08 63.2 9.1 107 204-327 1-131 (196)
334 PRK14532 adenylate kinase; Pro 97.0 0.00064 1.4E-08 67.2 4.0 36 206-243 2-37 (188)
335 COG0703 AroK Shikimate kinase 97.0 0.0011 2.5E-08 64.7 5.6 32 205-236 3-34 (172)
336 PRK14531 adenylate kinase; Pro 97.0 0.00078 1.7E-08 66.6 4.5 35 205-241 3-37 (183)
337 PF13604 AAA_30: AAA domain; P 97.0 0.00076 1.7E-08 67.6 4.4 84 205-298 19-119 (196)
338 TIGR02238 recomb_DMC1 meiotic 97.0 0.0043 9.2E-08 66.8 10.3 100 200-299 92-231 (313)
339 cd03216 ABC_Carb_Monos_I This 97.0 0.0034 7.5E-08 60.9 8.8 90 201-296 23-128 (163)
340 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.007 1.5E-07 61.6 11.1 23 204-226 29-51 (213)
341 cd01131 PilT Pilus retraction 96.9 0.0013 2.8E-08 66.0 5.7 66 206-271 3-83 (198)
342 cd02020 CMPK Cytidine monophos 96.9 0.00079 1.7E-08 63.2 3.9 30 207-236 2-31 (147)
343 PRK04328 hypothetical protein; 96.9 0.0085 1.8E-07 62.4 11.9 40 200-239 19-61 (249)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0037 8.1E-08 59.4 8.5 88 202-296 24-116 (144)
345 TIGR02236 recomb_radA DNA repa 96.9 0.0053 1.1E-07 65.9 10.5 40 200-239 91-139 (310)
346 cd03238 ABC_UvrA The excision 96.9 0.0038 8.2E-08 61.6 8.6 117 202-344 19-163 (176)
347 cd00227 CPT Chloramphenicol (C 96.9 0.0008 1.7E-08 65.9 3.8 35 205-239 3-37 (175)
348 PRK09519 recA DNA recombinatio 96.9 0.0053 1.1E-07 73.0 11.2 77 200-276 56-152 (790)
349 PRK06217 hypothetical protein; 96.9 0.00087 1.9E-08 66.2 4.1 31 206-236 3-33 (183)
350 PRK12724 flagellar biosynthesi 96.9 0.01 2.3E-07 65.9 12.8 37 203-239 222-262 (432)
351 PRK09376 rho transcription ter 96.9 0.0023 4.9E-08 70.3 7.5 23 207-229 172-194 (416)
352 PF10236 DAP3: Mitochondrial r 96.9 0.048 1E-06 58.7 17.5 127 251-386 142-308 (309)
353 cd01428 ADK Adenylate kinase ( 96.9 0.00088 1.9E-08 66.2 3.8 33 207-241 2-34 (194)
354 PRK06547 hypothetical protein; 96.9 0.0017 3.6E-08 63.9 5.7 35 202-236 13-47 (172)
355 PRK04841 transcriptional regul 96.9 0.018 3.9E-07 70.4 16.0 151 204-380 32-219 (903)
356 PTZ00088 adenylate kinase 1; P 96.9 0.0011 2.5E-08 68.1 4.7 33 203-235 5-37 (229)
357 cd01130 VirB11-like_ATPase Typ 96.9 0.0019 4.2E-08 64.0 6.2 70 203-272 24-110 (186)
358 PRK06696 uridine kinase; Valid 96.8 0.002 4.3E-08 65.8 6.4 41 203-243 21-64 (223)
359 KOG0481 DNA replication licens 96.8 0.015 3.2E-07 64.9 13.2 30 203-232 363-392 (729)
360 cd02021 GntK Gluconate kinase 96.8 0.00094 2E-08 63.4 3.7 33 207-241 2-34 (150)
361 PRK13833 conjugal transfer pro 96.8 0.002 4.3E-08 69.5 6.5 69 204-272 144-225 (323)
362 PRK13948 shikimate kinase; Pro 96.8 0.0013 2.8E-08 65.3 4.6 35 202-236 8-42 (182)
363 cd03247 ABCC_cytochrome_bd The 96.8 0.0096 2.1E-07 58.4 10.8 90 201-296 25-144 (178)
364 TIGR02782 TrbB_P P-type conjug 96.8 0.002 4.3E-08 68.9 6.3 69 204-272 132-214 (299)
365 cd00046 DEXDc DEAD-like helica 96.8 0.0034 7.4E-08 56.9 7.0 24 205-228 1-24 (144)
366 PRK14530 adenylate kinase; Pro 96.8 0.0013 2.7E-08 66.8 4.3 30 206-235 5-34 (215)
367 cd03228 ABCC_MRP_Like The MRP 96.8 0.013 2.7E-07 57.3 11.1 106 201-326 25-158 (171)
368 cd02027 APSK Adenosine 5'-phos 96.8 0.0049 1.1E-07 59.0 8.0 34 207-240 2-38 (149)
369 PRK13764 ATPase; Provisional 96.8 0.0021 4.6E-08 74.5 6.4 70 203-272 256-334 (602)
370 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0064 1.4E-07 58.3 8.8 88 203-296 24-126 (157)
371 PTZ00202 tuzin; Provisional 96.8 0.14 3E-06 57.2 19.9 63 168-239 259-321 (550)
372 PRK00771 signal recognition pa 96.7 0.011 2.5E-07 66.3 11.9 39 202-240 93-134 (437)
373 PRK12339 2-phosphoglycerate ki 96.7 0.029 6.3E-07 56.4 13.7 29 204-232 3-31 (197)
374 PTZ00035 Rad51 protein; Provis 96.7 0.0092 2E-07 65.0 10.8 100 200-299 114-253 (337)
375 COG1102 Cmk Cytidylate kinase 96.7 0.0013 2.8E-08 63.2 3.6 28 207-234 3-30 (179)
376 TIGR02655 circ_KaiC circadian 96.7 0.0068 1.5E-07 69.2 10.1 44 200-243 17-64 (484)
377 TIGR01313 therm_gnt_kin carboh 96.7 0.0011 2.5E-08 63.8 3.3 32 207-240 1-32 (163)
378 PRK14974 cell division protein 96.7 0.016 3.5E-07 63.0 12.4 37 203-239 139-178 (336)
379 PRK13894 conjugal transfer ATP 96.7 0.0021 4.7E-08 69.3 5.7 70 203-272 147-229 (319)
380 PLN03187 meiotic recombination 96.7 0.0099 2.1E-07 64.7 10.8 100 200-299 122-261 (344)
381 TIGR02655 circ_KaiC circadian 96.7 0.013 2.8E-07 67.0 12.2 77 200-276 259-367 (484)
382 PF06480 FtsH_ext: FtsH Extrac 96.7 0.0013 2.8E-08 58.6 3.3 66 35-100 27-108 (110)
383 PRK14528 adenylate kinase; Pro 96.7 0.0016 3.4E-08 64.8 4.2 31 205-235 2-32 (186)
384 PRK13695 putative NTPase; Prov 96.7 0.02 4.4E-07 55.9 12.0 23 206-228 2-24 (174)
385 PRK13946 shikimate kinase; Pro 96.7 0.0015 3.2E-08 64.8 4.0 34 203-236 9-42 (184)
386 PRK03731 aroL shikimate kinase 96.7 0.0017 3.7E-08 63.1 4.4 31 205-235 3-33 (171)
387 TIGR01420 pilT_fam pilus retra 96.7 0.0034 7.4E-08 68.5 7.1 69 204-272 122-205 (343)
388 PRK12723 flagellar biosynthesi 96.7 0.015 3.2E-07 64.4 12.1 112 202-331 172-307 (388)
389 PRK05057 aroK shikimate kinase 96.7 0.0017 3.8E-08 63.6 4.3 33 204-236 4-36 (172)
390 PF13245 AAA_19: Part of AAA d 96.7 0.0028 6E-08 53.7 4.8 31 206-236 12-49 (76)
391 cd03223 ABCD_peroxisomal_ALDP 96.6 0.014 3E-07 56.8 10.3 89 202-296 25-137 (166)
392 PF06414 Zeta_toxin: Zeta toxi 96.6 0.0057 1.2E-07 61.3 7.8 42 202-243 13-55 (199)
393 PRK10416 signal recognition pa 96.6 0.025 5.5E-07 61.0 13.2 37 202-238 112-151 (318)
394 COG0563 Adk Adenylate kinase a 96.6 0.0019 4E-08 63.9 4.0 34 206-241 2-35 (178)
395 PRK08154 anaerobic benzoate ca 96.6 0.0023 4.9E-08 68.8 4.9 35 201-235 130-164 (309)
396 cd03246 ABCC_Protease_Secretio 96.6 0.017 3.8E-07 56.4 10.7 88 203-296 27-142 (173)
397 PRK06581 DNA polymerase III su 96.6 0.053 1.2E-06 55.9 14.3 134 202-359 13-162 (263)
398 PRK09302 circadian clock prote 96.6 0.019 4.2E-07 65.9 12.7 40 200-239 27-70 (509)
399 cd02019 NK Nucleoside/nucleoti 96.6 0.0068 1.5E-07 50.2 6.6 31 207-237 2-33 (69)
400 PRK14527 adenylate kinase; Pro 96.6 0.002 4.3E-08 64.1 4.0 32 203-234 5-36 (191)
401 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.0045 9.8E-08 63.2 6.7 71 200-271 16-89 (229)
402 PRK13900 type IV secretion sys 96.6 0.0031 6.8E-08 68.4 5.8 71 202-272 158-245 (332)
403 TIGR01351 adk adenylate kinase 96.6 0.0019 4.1E-08 65.3 3.9 28 207-234 2-29 (210)
404 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0022 4.7E-08 63.0 4.1 28 206-233 5-32 (188)
405 COG3854 SpoIIIAA ncharacterize 96.6 0.0053 1.2E-07 62.3 6.8 71 204-274 137-230 (308)
406 PF12780 AAA_8: P-loop contain 96.6 0.011 2.5E-07 62.2 9.7 176 172-361 9-213 (268)
407 PRK02496 adk adenylate kinase; 96.6 0.0019 4.2E-08 63.6 3.8 30 206-235 3-32 (184)
408 cd03243 ABC_MutS_homologs The 96.6 0.011 2.4E-07 59.4 9.2 22 205-226 30-51 (202)
409 TIGR00767 rho transcription te 96.5 0.008 1.7E-07 66.3 8.7 25 205-229 169-193 (415)
410 COG1116 TauB ABC-type nitrate/ 96.5 0.019 4.1E-07 59.2 10.8 24 204-227 29-52 (248)
411 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0055 1.2E-07 63.6 7.2 34 207-240 2-38 (249)
412 PLN03186 DNA repair protein RA 96.5 0.011 2.4E-07 64.4 9.6 101 200-300 119-259 (342)
413 cd03222 ABC_RNaseL_inhibitor T 96.5 0.012 2.5E-07 58.2 9.0 88 203-296 24-117 (177)
414 TIGR02239 recomb_RAD51 DNA rep 96.5 0.012 2.6E-07 63.5 9.7 100 200-299 92-231 (316)
415 PRK00279 adk adenylate kinase; 96.5 0.0023 5E-08 64.9 4.0 33 207-241 3-35 (215)
416 cd03227 ABC_Class2 ABC-type Cl 96.5 0.01 2.2E-07 57.6 8.2 22 204-225 21-42 (162)
417 PRK04040 adenylate kinase; Pro 96.5 0.0027 5.7E-08 63.4 4.3 30 204-233 2-33 (188)
418 TIGR01613 primase_Cterm phage/ 96.5 0.0096 2.1E-07 63.8 8.7 140 178-343 56-202 (304)
419 PLN02674 adenylate kinase 96.4 0.0049 1.1E-07 64.0 6.0 39 202-242 29-67 (244)
420 PF09848 DUF2075: Uncharacteri 96.4 0.009 2E-07 65.4 8.5 23 206-228 3-25 (352)
421 cd01129 PulE-GspE PulE/GspE Th 96.4 0.0056 1.2E-07 64.4 6.6 67 206-272 82-159 (264)
422 smart00534 MUTSac ATPase domai 96.4 0.02 4.4E-07 56.7 10.2 19 207-225 2-20 (185)
423 COG0467 RAD55 RecA-superfamily 96.4 0.0056 1.2E-07 63.9 6.5 46 199-244 18-66 (260)
424 cd01125 repA Hexameric Replica 96.4 0.055 1.2E-06 55.7 13.8 21 207-227 4-24 (239)
425 COG1936 Predicted nucleotide k 96.4 0.0021 4.6E-08 62.5 3.0 30 206-236 2-31 (180)
426 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0062 1.3E-07 66.0 6.9 38 204-241 162-199 (325)
427 cd03230 ABC_DR_subfamily_A Thi 96.4 0.024 5.1E-07 55.4 10.4 88 203-296 25-141 (173)
428 COG1066 Sms Predicted ATP-depe 96.4 0.017 3.7E-07 63.2 10.0 77 202-278 91-184 (456)
429 PF13481 AAA_25: AAA domain; P 96.4 0.012 2.7E-07 58.0 8.4 72 206-277 34-156 (193)
430 COG4619 ABC-type uncharacteriz 96.4 0.015 3.3E-07 56.5 8.4 26 202-227 27-52 (223)
431 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0069 1.5E-07 65.5 6.7 82 169-256 58-142 (358)
432 PRK01184 hypothetical protein; 96.4 0.0031 6.7E-08 62.1 3.8 29 206-235 3-31 (184)
433 PF13238 AAA_18: AAA domain; P 96.4 0.0028 6.1E-08 57.7 3.3 22 207-228 1-22 (129)
434 PRK13851 type IV secretion sys 96.3 0.0037 8.1E-08 68.1 4.6 72 201-272 159-246 (344)
435 TIGR00150 HI0065_YjeE ATPase, 96.3 0.006 1.3E-07 57.4 5.4 29 203-231 21-49 (133)
436 cd03280 ABC_MutS2 MutS2 homolo 96.3 0.026 5.6E-07 56.6 10.4 21 205-225 29-49 (200)
437 PF01745 IPT: Isopentenyl tran 96.3 0.0054 1.2E-07 61.8 5.3 87 206-301 3-89 (233)
438 PF13479 AAA_24: AAA domain 96.3 0.0068 1.5E-07 61.5 6.2 67 204-274 3-80 (213)
439 COG4178 ABC-type uncharacteriz 96.3 0.018 3.8E-07 66.6 10.1 27 200-226 415-441 (604)
440 PF00406 ADK: Adenylate kinase 96.3 0.0027 5.8E-08 60.6 2.8 33 209-243 1-33 (151)
441 PRK10867 signal recognition pa 96.3 0.022 4.7E-07 64.0 10.3 71 202-272 98-193 (433)
442 TIGR02788 VirB11 P-type DNA tr 96.3 0.0048 1E-07 66.3 5.0 72 201-272 141-228 (308)
443 PF04665 Pox_A32: Poxvirus A32 96.3 0.053 1.2E-06 56.1 12.4 131 202-357 11-169 (241)
444 PRK11889 flhF flagellar biosyn 96.3 0.029 6.3E-07 61.9 11.0 37 203-239 240-279 (436)
445 COG2274 SunT ABC-type bacterio 96.3 0.022 4.7E-07 67.8 10.8 69 249-344 614-682 (709)
446 cd03115 SRP The signal recogni 96.3 0.015 3.3E-07 56.6 8.1 35 206-240 2-39 (173)
447 PRK04182 cytidylate kinase; Pr 96.2 0.0041 8.8E-08 60.5 4.0 29 206-234 2-30 (180)
448 TIGR03499 FlhF flagellar biosy 96.2 0.016 3.4E-07 61.6 8.7 38 203-240 193-235 (282)
449 PF13086 AAA_11: AAA domain; P 96.2 0.0064 1.4E-07 61.1 5.5 23 206-228 19-41 (236)
450 PF13521 AAA_28: AAA domain; P 96.2 0.0035 7.6E-08 60.5 3.4 27 207-234 2-28 (163)
451 PRK09302 circadian clock prote 96.2 0.039 8.5E-07 63.4 12.5 77 200-276 269-377 (509)
452 COG4088 Predicted nucleotide k 96.2 0.0054 1.2E-07 61.3 4.6 22 207-228 4-25 (261)
453 PHA02530 pseT polynucleotide k 96.2 0.0044 9.5E-08 65.9 4.3 35 204-239 2-36 (300)
454 PLN02199 shikimate kinase 96.2 0.0077 1.7E-07 63.9 5.9 46 179-236 89-134 (303)
455 TIGR02525 plasmid_TraJ plasmid 96.2 0.01 2.2E-07 65.4 7.0 68 205-272 150-235 (372)
456 COG2874 FlaH Predicted ATPases 96.2 0.031 6.6E-07 56.4 9.6 121 195-332 17-176 (235)
457 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0048 1E-07 59.5 3.9 28 207-234 3-30 (171)
458 TIGR01425 SRP54_euk signal rec 96.2 0.025 5.4E-07 63.2 10.0 39 202-240 98-139 (429)
459 TIGR00959 ffh signal recogniti 96.1 0.03 6.5E-07 62.8 10.6 70 202-271 97-191 (428)
460 cd03214 ABC_Iron-Siderophores_ 96.1 0.04 8.6E-07 54.2 10.3 90 202-297 23-144 (180)
461 PRK08233 hypothetical protein; 96.1 0.0061 1.3E-07 59.5 4.4 34 205-238 4-38 (182)
462 PRK14526 adenylate kinase; Pro 96.1 0.0055 1.2E-07 62.3 4.0 34 206-241 2-35 (211)
463 COG5271 MDN1 AAA ATPase contai 96.0 0.013 2.7E-07 72.7 7.2 143 205-358 889-1047(4600)
464 PRK08099 bifunctional DNA-bind 96.0 0.012 2.7E-07 65.4 6.9 33 203-235 218-250 (399)
465 PF05970 PIF1: PIF1-like helic 96.0 0.018 4E-07 63.3 8.0 42 178-228 5-46 (364)
466 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.056 1.2E-06 54.6 10.9 23 204-226 29-51 (204)
467 PRK12608 transcription termina 96.0 0.024 5.2E-07 62.1 8.7 23 206-228 135-157 (380)
468 PRK05541 adenylylsulfate kinas 96.0 0.0076 1.6E-07 59.0 4.4 28 202-229 5-32 (176)
469 cd03213 ABCG_EPDR ABCG transpo 96.0 0.047 1E-06 54.4 10.1 27 202-228 33-59 (194)
470 TIGR00064 ftsY signal recognit 95.9 0.046 1E-06 57.7 10.4 38 202-239 70-110 (272)
471 PF01583 APS_kinase: Adenylyls 95.9 0.032 7E-07 53.9 8.4 39 204-242 2-43 (156)
472 cd03229 ABC_Class3 This class 95.9 0.036 7.8E-07 54.4 8.9 89 203-297 25-147 (178)
473 PLN02459 probable adenylate ki 95.9 0.0085 1.8E-07 62.6 4.6 35 205-241 30-64 (261)
474 COG2804 PulE Type II secretory 95.9 0.014 3E-07 65.7 6.4 70 204-273 257-338 (500)
475 PF08423 Rad51: Rad51; InterP 95.9 0.038 8.1E-07 57.9 9.4 102 200-301 34-175 (256)
476 COG2805 PilT Tfp pilus assembl 95.8 0.017 3.7E-07 60.9 6.3 71 204-274 124-210 (353)
477 PRK11176 lipid transporter ATP 95.8 0.053 1.1E-06 63.3 11.2 28 201-228 366-393 (582)
478 PF10443 RNA12: RNA12 protein; 95.8 0.39 8.5E-06 53.4 16.9 36 204-241 17-54 (431)
479 PRK05480 uridine/cytidine kina 95.8 0.014 3.1E-07 58.7 5.4 39 203-241 5-44 (209)
480 PRK00889 adenylylsulfate kinas 95.8 0.013 2.9E-07 57.2 5.0 36 203-238 3-41 (175)
481 PRK12338 hypothetical protein; 95.7 0.01 2.2E-07 63.8 4.3 31 203-233 3-33 (319)
482 PRK11174 cysteine/glutathione 95.7 0.053 1.2E-06 63.4 10.8 28 201-228 373-400 (588)
483 cd03287 ABC_MSH3_euk MutS3 hom 95.7 0.09 2E-06 53.9 11.1 105 203-326 30-157 (222)
484 COG2074 2-phosphoglycerate kin 95.7 0.22 4.8E-06 51.5 13.6 184 201-416 86-282 (299)
485 PRK14529 adenylate kinase; Pro 95.7 0.0087 1.9E-07 61.3 3.6 34 206-241 2-35 (223)
486 TIGR00152 dephospho-CoA kinase 95.7 0.045 9.8E-07 54.2 8.7 33 207-241 2-34 (188)
487 PRK10078 ribose 1,5-bisphospho 95.7 0.0097 2.1E-07 58.9 3.8 29 205-233 3-31 (186)
488 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.049 1.1E-06 52.9 8.5 29 206-234 4-35 (159)
489 TIGR02524 dot_icm_DotB Dot/Icm 95.7 0.028 6.1E-07 61.7 7.6 66 205-272 135-222 (358)
490 PF08433 KTI12: Chromatin asso 95.7 0.027 5.8E-07 59.5 7.2 68 207-275 4-83 (270)
491 PRK13541 cytochrome c biogenes 95.6 0.11 2.4E-06 51.7 11.3 27 202-228 24-50 (195)
492 TIGR00455 apsK adenylylsulfate 95.6 0.044 9.5E-07 54.0 8.3 40 202-241 16-58 (184)
493 cd03232 ABC_PDR_domain2 The pl 95.6 0.092 2E-06 52.2 10.7 26 202-227 31-56 (192)
494 cd02028 UMPK_like Uridine mono 95.6 0.013 2.8E-07 57.8 4.4 36 207-242 2-40 (179)
495 smart00487 DEXDc DEAD-like hel 95.6 0.07 1.5E-06 51.4 9.5 33 205-237 25-62 (201)
496 PF03796 DnaB_C: DnaB-like hel 95.6 0.034 7.4E-07 58.0 7.7 39 200-238 15-57 (259)
497 TIGR03819 heli_sec_ATPase heli 95.6 0.022 4.8E-07 62.1 6.4 69 204-272 178-263 (340)
498 TIGR02533 type_II_gspE general 95.6 0.022 4.8E-07 65.0 6.6 69 204-272 241-321 (486)
499 PRK10263 DNA translocase FtsK; 95.6 0.099 2.2E-06 64.8 12.3 74 264-355 1142-1217(1355)
500 cd03215 ABC_Carb_Monos_II This 95.5 0.026 5.7E-07 55.6 6.3 27 202-228 24-50 (182)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-106 Score=899.90 Aligned_cols=564 Identities=31% Similarity=0.500 Sum_probs=495.2
Q ss_pred CccchHHHHHHhccCCccEEEEEcCeeEEEEEEecCceeEEEEeC-CCChhHHHHHHhCCCeEEEecccchhhHHHHHHH
Q 005643 36 PKLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDI-PLDPYLFETIASSGAEVDLLQKRQIHYFLKVLIA 114 (686)
Q Consensus 36 ~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (686)
.+++|++|...+..++|+++.+......+.+..+++....+.+.. ..++.+...+..+++.+....+...+.|..++.+
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSKNTVYLPKGVNDPNLVSFLDSNNITESGFIPEDNSLLASLLST 102 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCcceEEeecCCcccHHHHHHHHhcCCcccccCCCcccHHHHHHHH
Confidence 579999999999999999999988765677777777322222322 2478899999999987766655556677888889
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhhhhhhcchhhhhhcccccCCCcccCCcccccceecCcccHHHHHHHHHHhCCch
Q 005643 115 LLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPM 194 (686)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~ 194 (686)
++|+++++.+++...+++...++ + ...|++++++++.... ...+++|.||+|.+++|+++.|+|+||++|.
T Consensus 103 ~lp~il~~~~~~~~~~r~~~~g~----g--~~~~~~gkskak~~~~---~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ 173 (596)
T COG0465 103 WLPFILLIGLGWFFFRRQAQGGG----G--GGAFSFGKSKAKLYLE---DQVKVTFADVAGVDEAKEELSELVDFLKNPK 173 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC----C--CcccCCChHHHHHhcc---cccCcChhhhcCcHHHHHHHHHHHHHHhCch
Confidence 99998877533222222111111 0 1278889998876543 4788999999999999999999999999999
Q ss_pred hhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchh
Q 005643 195 QYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDA 273 (686)
Q Consensus 195 ~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDa 273 (686)
+|..+|++.|+|+||+||||||||+||||+|+|+++||+++|+|+|+++ ++.+++++|++|.+|++++||||||||||+
T Consensus 174 ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 174 KYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred hhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhh
Confidence 9999999999999999999999999999999999999999999999999 799999999999999999999999999999
Q ss_pred hhccC----CCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHH
Q 005643 274 IAGRH----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQ 349 (686)
Q Consensus 274 l~~~~----~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~e 349 (686)
++..| ++++++++|++||||.+||++..+. +|+||++||+|+.+|+||+||||||++|.++.||..+
T Consensus 254 vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~---------gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 254 VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE---------GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred cccccCCCCCCCchHHHHHHHHHHhhhccCCCCC---------ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 98766 3688999999999999999988654 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhccccccchhHH
Q 005643 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQ 429 (686)
Q Consensus 350 R~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g~~l~~~~~ 429 (686)
|.+|++.|++++++..++|+..+|+.|+||+|+||+|++|+|++.|+|+++..|++.|+.+|+++++. |.
T Consensus 325 Re~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~---G~------- 394 (596)
T COG0465 325 REQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIA---GP------- 394 (596)
T ss_pred HHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhc---Cc-------
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 33
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHhhcCCCccceeEEeecCCcceeEEEeeccccccccccccHHHHHHHHHHHhhhh
Q 005643 430 QKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGR 509 (686)
Q Consensus 430 ~~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~~~i~p~g~~~~~~~~~p~e~~~~~~~~t~~~l~~~i~v~LgGR 509 (686)
++++..+++++++.+||||+|||++++++|+.+++++++|+|||+++|+|+++|.+|. .++|+.+++++|+++||||
T Consensus 395 erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~---~l~sk~~l~~~i~~~lgGR 471 (596)
T COG0465 395 ERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDK---YLMSKEELLDRIDVLLGGR 471 (596)
T ss_pred CcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCcccc---ccccHHHHHHHHHHHhCCc
Confidence 3445578999999999999999999999999999999999999999999999999974 4669999999999999999
Q ss_pred HHHHHhcCCCCCCCCcchHHHHHHHHHHHhhcccccccCccccccccccccCCCCCCCccccccCCCCCCCCCCCCHHHH
Q 005643 510 CAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELS 589 (686)
Q Consensus 510 aAEel~fG~~~ttGa~~Dl~~AT~iA~~mV~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 589 (686)
||||++||.++||||+|||++||++||.||++|| |+..+|++.+...++ .|+++.+ ..+++|++|+
T Consensus 472 aAEel~~g~e~ttGa~~D~~~at~~ar~mVt~~G--------ms~~lG~v~~~~~~~-~flg~~~-----~~~~~Se~ta 537 (596)
T COG0465 472 AAEELIFGYEITTGASNDLEKATDLARAMVTEYG--------MSAKLGPVAYEQVEG-VFLGRYQ-----KAKNYSEETA 537 (596)
T ss_pred HhhhhhhcccccccchhhHHHHHHHHHHhhhhcC--------cchhhCceehhhccc-ccccccc-----cccCccHHHH
Confidence 9999999934999999999999999999999955 444455555544444 5666543 3568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHcCCC
Q 005643 590 ELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQGLS 644 (686)
Q Consensus 590 ~~id~ev~~il~~ay~~A~~iL~~nr~~L~~lA~~LlekEtL~g~ei~~il~~~~ 644 (686)
+.||.||++++++||++|++||.+|++.++.+|+.|+|+|||++++|.+|+....
T Consensus 538 ~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 538 QEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999998753
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-104 Score=842.16 Aligned_cols=437 Identities=33% Similarity=0.549 Sum_probs=405.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
...+++|+||-|.||+|++|+|+|+||++|.+|.++|.+.|+||||+||||||||+||||+|+|+|+|||+.++++|-++
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCCh-hHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 005643 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP-RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (686)
Q Consensus 244 -~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~-e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (686)
+|.|++++|++|..|++++||||||||||+++++|...+. ...+++||||.+||||..+.+ ||||+|||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG---------iIvigATN 447 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG---------IIVIGATN 447 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc---------eEEEeccC
Confidence 7999999999999999999999999999999988765443 778999999999999887654 99999999
Q ss_pred CCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Q 005643 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS 401 (686)
Q Consensus 322 ~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~ 401 (686)
.|+.||+||.||||||++|.+|.||..+|.+||+.|+.+..++.++|+.-||+.|+||+|+||+|++|.|++.|+.+|..
T Consensus 448 fpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~ 527 (752)
T KOG0734|consen 448 FPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE 527 (752)
T ss_pred ChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhccccccchhHHhhhhcchhhHHHHHHHHHHHHHHHHHhhcCCCccceeEEeecCCcceeEEEe
Q 005643 402 KIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVF 481 (686)
Q Consensus 402 ~It~~dl~~Al~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~~~i~p~g~~~~~~~~ 481 (686)
.+++.+++.|-||+++ |. +++...++++-++++||||+||||||....+..|.++.||.|||.++|.|.+
T Consensus 528 ~VtM~~LE~akDrIlM---G~-------ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~ 597 (752)
T KOG0734|consen 528 MVTMKHLEFAKDRILM---GP-------ERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQ 597 (752)
T ss_pred cccHHHHhhhhhheee---cc-------cccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceee
Confidence 9999999999999984 43 3446778888899999999999999999999999999999999999999999
Q ss_pred eccccccccccccHHHHHHHHHHHhhhhHHHHHhcC-CCCCCCCcchHHHHHHHHHHHhhcccccccCcccccccccccc
Q 005643 482 YPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLD 560 (686)
Q Consensus 482 ~p~e~~~~~~~~t~~~l~~~i~v~LgGRaAEel~fG-~~~ttGa~~Dl~~AT~iA~~mV~~~~~~~~g~~~~~~~~g~~~ 560 (686)
+|..|.+. .||.++++++.||||||+|||++|| |++||||++||++||++|++||+.| |||+++|++.
T Consensus 598 LPe~D~~~---~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~f--------GMSd~vG~v~ 666 (752)
T KOG0734|consen 598 LPEKDRYS---ITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKF--------GMSDKVGPVT 666 (752)
T ss_pred cCccchhh---HHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHc--------Ccccccccee
Confidence 99998654 4999999999999999999999999 5799999999999999999999984 4566666654
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHH
Q 005643 561 RPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKL 640 (686)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~nr~~L~~lA~~LlekEtL~g~ei~~il 640 (686)
+..... ..+++.+|.++||.||+++|+++|+||+.||+.|...|++||++|||+|||+++||++++
T Consensus 667 ~~~~~~--------------~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl 732 (752)
T KOG0734|consen 667 LSAEDN--------------SSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVL 732 (752)
T ss_pred eeccCC--------------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 432111 235678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 005643 641 QGLS 644 (686)
Q Consensus 641 ~~~~ 644 (686)
++..
T Consensus 733 ~g~~ 736 (752)
T KOG0734|consen 733 KGKS 736 (752)
T ss_pred hccc
Confidence 8763
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-98 Score=844.61 Aligned_cols=569 Identities=32% Similarity=0.485 Sum_probs=458.5
Q ss_pred ccchHHHH-HHhccCCccEEEEEcCeeEEEEEEecCc------eeEEEEeCCCChhHHHHHH----hCCCe-EEEecc--
Q 005643 37 KLPYTYFL-EKLDSSEVAAVVFTEDLKRLYVTMKEGF------PLEYVVDIPLDPYLFETIA----SSGAE-VDLLQK-- 102 (686)
Q Consensus 37 ~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~----~~~~~-~~~~~~-- 102 (686)
++++.+|+ ++++.|.|.++.+...-....+.+..+. ...+..++-.-..+.+.|. .-++. ++..+.
T Consensus 165 ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~v~~F~~kl~~a~~~l~~~~~~~~pV~~ 244 (774)
T KOG0731|consen 165 EITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRSVDNFERKLDEAQRNLGIDTVVRVPVTY 244 (774)
T ss_pred eeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecccchHHHHHHHHHHHhCCCceeEeeeEE
Confidence 69999995 5699999999988752222233332211 1223333322233333333 22332 222222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc--cchhhhhhhhhcchhhhhhcccccCCCcccCCcccccceecCcccH
Q 005643 103 RQIHYFLKVLIALLPGILILSLIRETVMLLHI--TSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVW 180 (686)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k 180 (686)
.....+...+..++|+++++..+....+...+ .+.. ......+.|+.++.. .....+.+++++|+||+|++++|
T Consensus 245 ~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~---gg~~g~~~f~~~ks~-~k~~~~~~t~V~FkDVAG~deAK 320 (774)
T KOG0731|consen 245 ISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGP---GGGLGPRLFGVSKSY-KKFKNEGNTGVKFKDVAGVDEAK 320 (774)
T ss_pred eecchhhhhhhhhhHHHHHHHhHheeeeecccccccCC---ccccCcceeeeccce-eeeccCCCCCCccccccCcHHHH
Confidence 12234455667778854444332211111110 0000 000111223333332 11233577889999999999999
Q ss_pred HHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhhHHHHHHHHHHHHH
Q 005643 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIAR 259 (686)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak 259 (686)
++|+|+|+||+||++|.++|+++|+|+||+||||||||+||||+|+|+|+||+++|+++|+++ ++.++++++++|..|+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999 6788999999999999
Q ss_pred hcCCeEEEEccchhhhccCC-----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCC
Q 005643 260 RNAPAFVFVDEIDAIAGRHA-----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPG 334 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~~-----~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpg 334 (686)
.++||||||||||+++.++. ++++++++++||||.+||++.... +|+|+|+||+|+.||+||+|||
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~---------~vi~~a~tnr~d~ld~allrpG 471 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK---------GVIVLAATNRPDILDPALLRPG 471 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC---------cEEEEeccCCccccCHHhcCCC
Confidence 99999999999999988773 568899999999999999987664 4999999999999999999999
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005643 335 RIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 335 RFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (686)
|||++|.+++|+..+|.+|++.|+++.++. +++|+..+|..|+||+|+||.|+||+|++.|+|++...|+..|+.+|++
T Consensus 472 Rfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 472 RFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred ccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 999999999999999999999999999985 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccchhHHhhhhcchhhHHHHHHHHHHHHHHHHHhhcCCCccceeEEeecCCcceeEEEeeccccccccccc
Q 005643 414 KQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYT 493 (686)
Q Consensus 414 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~~~i~p~g~~~~~~~~~p~e~~~~~~~~ 493 (686)
+++. |. ++....++.++++.+||||||||+++|++++.+|+.+++|+|+ +++|++++.|.++ ++.
T Consensus 552 Rvi~---G~-------~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiPG-qalG~a~~~P~~~----~l~ 616 (774)
T KOG0731|consen 552 RVIA---GM-------EKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIPG-QALGYAQYLPTDD----YLL 616 (774)
T ss_pred HHhc---cc-------cccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEeccC-CccceEEECCccc----ccc
Confidence 8874 22 3445678889999999999999999999999999999999994 4999999999987 467
Q ss_pred cHHHHHHHHHHHhhhhHHHHHhcCCCCCCCCcchHHHHHHHHHHHhhcccccccCccccccccccccCCCCCCCcccccc
Q 005643 494 TFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYR 573 (686)
Q Consensus 494 t~~~l~~~i~v~LgGRaAEel~fG~~~ttGa~~Dl~~AT~iA~~mV~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 573 (686)
|+++|++|||++||||||||++||+++||||++||++||++|+.||++|| |++++|.++++....+ +
T Consensus 617 sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~G--------ms~kig~~~~~~~~~~---~-- 683 (774)
T KOG0731|consen 617 SKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFG--------MSEKIGPISFQMLLPG---D-- 683 (774)
T ss_pred cHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcC--------cccccCceeccCcccc---c--
Confidence 99999999999999999999999967999999999999999999999855 4444444444211111 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCCCccc
Q 005643 574 WDDPQVIPTDMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQGLSPVMFED 650 (686)
Q Consensus 574 ~~~~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~nr~~L~~lA~~LlekEtL~g~ei~~il~~~~~~~~~~ 650 (686)
.....+||..+++.||.||++|+..||++|.++|++|++.|+.||+.|+|||+|+++|+.+++...++.+...
T Consensus 684 ----~~~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~~~ 756 (774)
T KOG0731|consen 684 ----ESFRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMPEK 756 (774)
T ss_pred ----ccccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCccccc
Confidence 1224678999999999999999999999999999999999999999999999999999999999888877543
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.4e-93 Score=819.26 Aligned_cols=566 Identities=30% Similarity=0.489 Sum_probs=475.5
Q ss_pred CccchHHHHHHhccCCccEEEEEcCeeE--EEEEEec-Cc-eeEEEEeCC-CChhHHHHHHhCCCeEEEecccchhhHHH
Q 005643 36 PKLPYTYFLEKLDSSEVAAVVFTEDLKR--LYVTMKE-GF-PLEYVVDIP-LDPYLFETIASSGAEVDLLQKRQIHYFLK 110 (686)
Q Consensus 36 ~~~~y~~f~~~~~~~~v~~~~~~~~~~~--~~~~~~~-~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 110 (686)
++++||+|++++++|+|++|.+.++... +..+.++ |. ...|.+.+| .++.+.+.|.++++++...+....++|..
T Consensus 50 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 129 (638)
T CHL00176 50 SRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLKSNIVT 129 (638)
T ss_pred ceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCccchHHH
Confidence 4699999999999999999999877532 2223332 21 235777788 48899999999999999877655555655
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhccchhhhhhhhhcchhhhhhcccccCCCcccCCcccccceecCcccHHHHHHHHHH
Q 005643 111 VLIA-LLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIY 189 (686)
Q Consensus 111 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~ 189 (686)
.+.. ++|+++++.+++..........+ ....+++++++++.... .....++|+||+|.+++|+++.+++++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~f~dv~G~~~~k~~l~eiv~~ 201 (638)
T CHL00176 130 ILSNLLLPLILIGVLWFFFQRSSNFKGG-----PGQNLMNFGKSKARFQM---EADTGITFRDIAGIEEAKEEFEEVVSF 201 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CcccccccchhHHHhhc---ccCCCCCHHhccChHHHHHHHHHHHHH
Confidence 5544 46777665433222221110100 01234567777654432 346679999999999999999999999
Q ss_pred hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhhHHHHHHHHHHHHHhcCCeEEEE
Q 005643 190 MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFV 268 (686)
Q Consensus 190 l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfI 268 (686)
+++|..|..+|...|+|+||+||||||||++|+++|+++++||+++++++|.+. .+.+..+++.+|..|+..+||||||
T Consensus 202 lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfI 281 (638)
T CHL00176 202 LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFI 281 (638)
T ss_pred HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999999877 5667888999999999999999999
Q ss_pred ccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCC
Q 005643 269 DEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (686)
Q Consensus 269 DEiDal~~~~~----~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~ 344 (686)
||||+++.+++ +++++..+++++||.+||++.... +|+||+|||+++.+|++++||||||++|.+++
T Consensus 282 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~---------~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 282 DEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK---------GVIVIAATNRVDILDAALLRPGRFDRQITVSL 352 (638)
T ss_pred ecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC---------CeeEEEecCchHhhhhhhhccccCceEEEECC
Confidence 99999986543 346677899999999999876543 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhcccccc
Q 005643 345 PDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 424 (686)
Q Consensus 345 Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g~~l 424 (686)
|+.++|.+||+.|+++..+..++++..+|..|.||||+||+++|++|++.|+++++..|+++||..|+++++.+..+.
T Consensus 353 Pd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~-- 430 (638)
T CHL00176 353 PDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGT-- 430 (638)
T ss_pred CCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccC--
Confidence 999999999999999888888999999999999999999999999999999999999999999999999987532111
Q ss_pred chhHHhhhhcchhhHHHHHHHHHHHHHHHHHhhcCCCccceeEEeecCCcceeEEEeeccccccccccccHHHHHHHHHH
Q 005643 425 TEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVV 504 (686)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~~~i~p~g~~~~~~~~~p~e~~~~~~~~t~~~l~~~i~v 504 (686)
...+.++++++||||+||||+++++|+.+++++++|+|||.++|++++.|.++. ...|+.+|+++|++
T Consensus 431 ---------~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~---~~~t~~~l~~~i~~ 498 (638)
T CHL00176 431 ---------PLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQ---SLVSRSQILARIVG 498 (638)
T ss_pred ---------ccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCccc---ccccHHHHHHHHHH
Confidence 234566799999999999999999999999999999999999999999998874 35699999999999
Q ss_pred HhhhhHHHHHhcCC-CCCCCCcchHHHHHHHHHHHhhcccccccCccccccccccccCCCCCC-CccccccCCCCCCCCC
Q 005643 505 AHGGRCAERLVFGD-DVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSD-GDLIKYRWDDPQVIPT 582 (686)
Q Consensus 505 ~LgGRaAEel~fG~-~~ttGa~~Dl~~AT~iA~~mV~~~~~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 582 (686)
+|||||||+++||+ ++||||+|||++||+||+.||++|||+.+|++.+... .. ..|++... ...+
T Consensus 499 ~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~~---------~~~~~~~~~~~----~~~~ 565 (638)
T CHL00176 499 ALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSSIGPISLESN---------NSTDPFLGRFM----QRNS 565 (638)
T ss_pred HhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCcCCceeecCC---------CCccccccccc----cccc
Confidence 99999999999994 6999999999999999999999987766766654321 22 33444322 2346
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHcCCCC
Q 005643 583 DMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQGLSP 645 (686)
Q Consensus 583 ~~s~~~~~~id~ev~~il~~ay~~A~~iL~~nr~~L~~lA~~LlekEtL~g~ei~~il~~~~~ 645 (686)
.||++++..||.||+++|++||++|++||++||+.|++||++|+|+|||+++||++|++....
T Consensus 566 ~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~ 628 (638)
T CHL00176 566 EYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTI 628 (638)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCC
Confidence 799999999999999999999999999999999999999999999999999999999987543
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=9.3e-89 Score=786.94 Aligned_cols=563 Identities=28% Similarity=0.468 Sum_probs=475.4
Q ss_pred CCccchHHHHHHhccCCccEEEEEcCeeEEEEEEecCceeEEEEeCC-CChhHHHHHHhCCCeEEEecccchhhHHHHHH
Q 005643 35 RPKLPYTYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIP-LDPYLFETIASSGAEVDLLQKRQIHYFLKVLI 113 (686)
Q Consensus 35 ~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (686)
...++|+.|.+.+.+|.|.++.+..+ .|++..+++ ..|.+..| .++.+...|.++++.+...+.....++..++.
T Consensus 29 ~~~~~~~~~~~~~~~~~v~Ev~~~~~--tIK~~~~e~--~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~ 104 (644)
T PRK10733 29 GRKVDYSTFLQEVNQDQVREARINGR--EINVTKKDS--NRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFI 104 (644)
T ss_pred cccCCHHHHHHHHHcCCeEEEEEeCC--EEEEEEcCC--ceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHH
Confidence 35699999999999999999999766 466666655 34666566 46789999999999998876655455555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcchhhhhhcccccCCCcccCCcccccceecCcccHHHHHHHHHHhCCc
Q 005643 114 ALLPGILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNP 193 (686)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p 193 (686)
+++|+++++.++......+..++ ...++.|++........ .....+|+|+.|.+.+++.+.+++++++++
T Consensus 105 ~~~~~il~ig~~~v~~g~mt~G~-------~~~l~af~~~~~~~~~~---~~~~~~~~di~g~~~~~~~l~~i~~~~~~~ 174 (644)
T PRK10733 105 SWFPMLLLIGVWIFFMRQMQGGG-------GKGAMSFGKSKARMLTE---DQIKTTFADVAGCDEAKEEVAELVEYLREP 174 (644)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCC-------CceeEEeccccccccCc---hhhhCcHHHHcCHHHHHHHHHHHHHHhhCH
Confidence 55666655543332222222211 12456666555444332 456788999999999999999999999999
Q ss_pred hhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhhHHHHHHHHHHHHHhcCCeEEEEccch
Q 005643 194 MQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEID 272 (686)
Q Consensus 194 ~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiD 272 (686)
..|..++.+.|+|+||+||||||||++|+++|+++++||+.++++++.+. .+.+...++.+|..|+..+||||||||+|
T Consensus 175 ~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD 254 (644)
T PRK10733 175 SRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEID 254 (644)
T ss_pred HHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHh
Confidence 99999999999999999999999999999999999999999999999887 56778899999999999999999999999
Q ss_pred hhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHH
Q 005643 273 AIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAK 348 (686)
Q Consensus 273 al~~~~~----~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~ 348 (686)
+++.++. +++.+..+++|+||.+||++.... +|+||+|||+|+.||++++||||||++|.|++|+.+
T Consensus 255 ~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~---------~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 255 AVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE---------GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred hhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC---------CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 9987653 345677889999999999976543 499999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhccccccchhH
Q 005643 349 QRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEE 428 (686)
Q Consensus 349 eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g~~l~~~~ 428 (686)
+|.+||+.|++..++..++|+..+|+.|.||||+||.++|++|+..|+++++..|++.|+.+|++++.. |.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~---g~------ 396 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM---GA------ 396 (644)
T ss_pred HHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhc---cc------
Confidence 999999999999999999999999999999999999999999999999999999999999999998863 21
Q ss_pred HhhhhcchhhHHHHHHHHHHHHHHHHHhhcCCCccceeEEeecCCcceeEEEeeccccccccccccHHHHHHHHHHHhhh
Q 005643 429 QQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGG 508 (686)
Q Consensus 429 ~~~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~~~i~p~g~~~~~~~~~p~e~~~~~~~~t~~~l~~~i~v~LgG 508 (686)
++.+..++.++++++||||+||||+++++|+.+++++++|+|||.++|++.+.|.++.+ ..|+.+|+++|+++|||
T Consensus 397 -~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~---~~~~~~l~~~i~~~lgG 472 (644)
T PRK10733 397 -ERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAI---SASRQKLESQISTLYGG 472 (644)
T ss_pred -ccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccc---cccHHHHHHHHHHHHhh
Confidence 12234566778999999999999999999999999999999999999999999998754 35999999999999999
Q ss_pred hHHHHHhcCC-CCCCCCcchHHHHHHHHHHHhhcccccccCccccccccccccCCCCCCCccccccCCCCCCCCCCCCHH
Q 005643 509 RCAERLVFGD-DVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLE 587 (686)
Q Consensus 509 RaAEel~fG~-~~ttGa~~Dl~~AT~iA~~mV~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 587 (686)
||||+++||+ ++||||+|||++||+||+.||++|||+ +.+|++.+.....+.|+++++. ..++||++
T Consensus 473 raAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms--------~~lg~~~~~~~~~~~~lg~~~~----~~~~~s~~ 540 (644)
T PRK10733 473 RLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFS--------EKLGPLLYAEEEGEVFLGRSVA----KAKHMSDE 540 (644)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCC--------ccccchhhcccccccccccccc----cccccCHH
Confidence 9999999994 699999999999999999999996544 3344443333344455555432 34689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHcCCCC
Q 005643 588 LSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQGLSP 645 (686)
Q Consensus 588 ~~~~id~ev~~il~~ay~~A~~iL~~nr~~L~~lA~~LlekEtL~g~ei~~il~~~~~ 645 (686)
|++.||+||++||++||++|++||++||+.|++||++|+|+|||+++||++|+.+...
T Consensus 541 ~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~~ 598 (644)
T PRK10733 541 TARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRDV 598 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999987543
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3.4e-80 Score=699.13 Aligned_cols=488 Identities=34% Similarity=0.550 Sum_probs=414.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhhccchhhhhhhhhcchhhhhhcccccCCCcccCCcccccceecCcccHHHHHHH
Q 005643 108 FLKVLIALLP-GILILSLIRETVMLLHITSSRLLYKKYNQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDEL 186 (686)
Q Consensus 108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~el 186 (686)
|.+++..++| +++++.+++..+..+.+++ ++.+.+++++..+.. .+.+.++|+||+|.+++|+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~~di~g~~~~k~~l~~~ 70 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGGG--------GRAFSFGKSKAKLLN---EEKPKVTFKDVAGIDEAKEELMEI 70 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--------CCCcCCCCCcccccc---CCCCCCCHHHhCCHHHHHHHHHHH
Confidence 4455555555 5555444433333322221 234556666654443 357889999999999999999999
Q ss_pred HHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhhHHHHHHHHHHHHHhcCCeE
Q 005643 187 MIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAF 265 (686)
Q Consensus 187 v~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~~P~I 265 (686)
+.++++|..|...|.++|+|+|||||||||||++|+++|+++++||+.++++++.+. .+.+.+.++.+|+.|+..+|||
T Consensus 71 ~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~I 150 (495)
T TIGR01241 71 VDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCI 150 (495)
T ss_pred HHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999999999999999999999999999999999999887 5677889999999999999999
Q ss_pred EEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEE
Q 005643 266 VFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLY 341 (686)
Q Consensus 266 LfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~ 341 (686)
|||||||+++.++.. .+.+..+++++||.+||++.... +|+||+|||+|+.||++++||||||++|+
T Consensus 151 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~---------~v~vI~aTn~~~~ld~al~r~gRfd~~i~ 221 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT---------GVIVIAATNRPDVLDPALLRPGRFDRQVV 221 (495)
T ss_pred EEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC---------CeEEEEecCChhhcCHHHhcCCcceEEEE
Confidence 999999999876543 35567789999999999876543 48999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhccc
Q 005643 342 IGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMG 421 (686)
Q Consensus 342 v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g 421 (686)
+++|+.++|.+||+.++++.++..++++..++..|.||||+||.++|++|+..|.++++..|+.+|+..|++++...
T Consensus 222 i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~--- 298 (495)
T TIGR01241 222 VDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAG--- 298 (495)
T ss_pred cCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc---
Confidence 99999999999999999988888889999999999999999999999999999999998999999999999987632
Q ss_pred cccchhHHhhhhcchhhHHHHHHHHHHHHHHHHHhhcCCCccceeEEeecCCcceeEEEeeccccccccccccHHHHHHH
Q 005643 422 VLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQ 501 (686)
Q Consensus 422 ~~l~~~~~~~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~~~i~p~g~~~~~~~~~p~e~~~~~~~~t~~~l~~~ 501 (686)
. ++....+++++++++||||+||||+++.+++..+++.++|.|+|..+|++...|.++. ...|+.+++++
T Consensus 299 ~-------~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~---~~~t~~~l~~~ 368 (495)
T TIGR01241 299 P-------EKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDK---YLYTKSQLLAQ 368 (495)
T ss_pred c-------ccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCcccc---ccCCHHHHHHH
Confidence 1 1123446778899999999999999999999889999999999999999999888753 46699999999
Q ss_pred HHHHhhhhHHHHHhcCCCCCCCCcchHHHHHHHHHHHhhcccccccCccccccccccccCCCCCCCccccccCCCCCCCC
Q 005643 502 MVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIP 581 (686)
Q Consensus 502 i~v~LgGRaAEel~fG~~~ttGa~~Dl~~AT~iA~~mV~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 581 (686)
|+++|||||||+++|| ++|+||++||++||++|+.||++||| ++.+|++.+.......+++.++ ...
T Consensus 369 i~v~LaGraAE~~~~G-~~s~Ga~~Dl~~At~lA~~mv~~~Gm--------~~~~g~~~~~~~~~~~~l~~~~----~~~ 435 (495)
T TIGR01241 369 IAVLLGGRAAEEIIFG-EVTTGASNDIKQATNIARAMVTEWGM--------SDKLGPVAYGSDGGDVFLGRGF----AKA 435 (495)
T ss_pred HHHHhhHHHHHHHHhc-CCCCCchHHHHHHHHHHHHHHHHhCC--------CcccCceeeccCcccccccccc----ccc
Confidence 9999999999999999 49999999999999999999999654 3334444333222233444322 235
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHc
Q 005643 582 TDMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQ 641 (686)
Q Consensus 582 ~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~nr~~L~~lA~~LlekEtL~g~ei~~il~ 641 (686)
++||+.++..+|+||+++|++||++|+++|++||+.|++||++|+++|+|+++||++|+.
T Consensus 436 ~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 436 KEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-56 Score=463.73 Aligned_cols=246 Identities=35% Similarity=0.607 Sum_probs=235.2
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.+.|.+||+||.|.++..++|+|.|+. |++|+.|.++|+.+|+|||||||||||||+||||+|++.++.|+.+.+|+|+
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 367899999999999999999999986 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
.. .|+|++.+|++|+.|+.++||||||||||+++++|. +++.+.++++-+||++||||.... +|-|
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~---------nvKV 293 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG---------NVKV 293 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC---------CeEE
Confidence 99 589999999999999999999999999999998763 567788999999999999987654 5999
Q ss_pred EEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
|+|||+++.|||||+|||||||.|+||+||.++|.+||+.|.++..+..++|++.||+.|.|+|||||.++|.+|.+.|+
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (686)
|+.+..||++||.+|.++++.
T Consensus 374 R~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 374 RERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HhccCeecHHHHHHHHHHHHh
Confidence 999999999999999999874
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.4e-53 Score=509.78 Aligned_cols=309 Identities=18% Similarity=0.208 Sum_probs=258.7
Q ss_pred hhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh-----------------------------
Q 005643 194 MQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE----------------------------- 244 (686)
Q Consensus 194 ~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~----------------------------- 244 (686)
..+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|.+..
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 355678999999999999999999999999999999999999999987421
Q ss_pred ---------------hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc
Q 005643 245 ---------------KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309 (686)
Q Consensus 245 ---------------~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~ 309 (686)
+.+..+++.+|+.|++++||||||||||+++.+ ++...++++|+++|++.....
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~-----ds~~ltL~qLLneLDg~~~~~------ 1768 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN-----ESNYLSLGLLVNSLSRDCERC------ 1768 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC-----ccceehHHHHHHHhccccccC------
Confidence 123345899999999999999999999999754 233457899999999864321
Q ss_pred ccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHH--hcCCCcccc-ccHHHHHHhccCCCHHHHHH
Q 005643 310 LRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH--SAGKQLAED-VNFEELVFRTVGFSGADIRN 386 (686)
Q Consensus 310 ~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~--l~~~~l~~d-vdl~~La~~t~G~sgadL~~ 386 (686)
...+|+||||||+|+.|||||+||||||++|.|+.|+..+|.+++..+ .++.++..+ +|+..+|+.|.|||||||++
T Consensus 1769 s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLan 1848 (2281)
T CHL00206 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVA 1848 (2281)
T ss_pred CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHH
Confidence 234699999999999999999999999999999999999999998754 455666543 68999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhccccccchhHHhhhhcchhhHHHHHHHHHHHHHHHHHhhcCCCcccee
Q 005643 387 LVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAF 466 (686)
Q Consensus 387 lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~ 466 (686)
+||+|++.|+++++..|++++++.|+++++.+. +. ...+..++ .+|+||+||||++.++++.+++++
T Consensus 1849 LvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~----------~~--~~~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~k 1915 (2281)
T CHL00206 1849 LTNEALSISITQKKSIIDTNTIRSALHRQTWDL----------RS--QVRSVQDH-GILFYQIGRAVAQNVLLSNCPIDP 1915 (2281)
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhh----------hh--cccCcchh-hhhhhHHhHHHHHHhccCCCCcce
Confidence 999999999999999999999999999997421 11 12222333 369999999999999999999999
Q ss_pred EEeecC------CcceeEEEeeccccccccccccHHHHHHHHHHHhhhhHHHHHhcCCCCCCCCcchHHHHHHHHHHHhh
Q 005643 467 SQLLPG------GKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVI 540 (686)
Q Consensus 467 ~~i~p~------g~~~~~~~~~p~e~~~~~~~~t~~~l~~~i~v~LgGRaAEel~fG~~~ttGa~~Dl~~AT~iA~~mV~ 540 (686)
++|.++ |...|+++++|.+ ..+++.+++.+|++||||||||+++|+. .+ .|+.||+
T Consensus 1916 ISIy~~~~~~r~~~~yl~~wyle~~-----~~mkk~tiL~~Il~cLAGraAedlwf~~-~~------------~~~n~It 1977 (2281)
T CHL00206 1916 ISIYMKKKSCKEGDSYLYKWYFELG-----TSMKKLTILLYLLSCSAGSVAQDLWSLP-GP------------DEKNGIT 1977 (2281)
T ss_pred EEEecCCccccCcccceeEeecCCc-----ccCCHHHHHHHHHHHhhhhhhhhhccCc-ch------------hhhcCcc
Confidence 998532 4567999999876 3569999999999999999999999984 22 5777777
Q ss_pred cccc
Q 005643 541 SPQN 544 (686)
Q Consensus 541 ~~~~ 544 (686)
.+|+
T Consensus 1978 ~yg~ 1981 (2281)
T CHL00206 1978 SYGL 1981 (2281)
T ss_pred cccc
Confidence 7654
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-48 Score=431.29 Aligned_cols=244 Identities=33% Similarity=0.565 Sum_probs=229.6
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.+.++++|+||.|++++|.+|++.|.| ++.|..|.++|+.+|+|||||||||||||++|||+|++++.+|+++.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 367899999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
.+ +|.+++.++++|++|+..+|||||+||||++++.|++ ++.-.++.+++||++|||..... +|+||||
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k---------~V~ViAA 576 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK---------NVLVIAA 576 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC---------cEEEEec
Confidence 99 7899999999999999999999999999999987743 34457889999999999987654 4999999
Q ss_pred cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
||+|+.||+||+||||||+.|+||+||.+.|.+||+.++++.++.+++|+.+||..|.||||+||.++|++|+..|.++.
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~ 656 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRES 656 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C--CcccHHHHHHHHHHH
Q 005643 400 H--SKIQQQDIVDVLDKQ 415 (686)
Q Consensus 400 ~--~~It~~dl~~Al~~~ 415 (686)
- ..|+.+||.+|+..+
T Consensus 657 i~a~~i~~~hf~~al~~~ 674 (693)
T KOG0730|consen 657 IEATEITWQHFEEALKAV 674 (693)
T ss_pred cccccccHHHHHHHHHhh
Confidence 4 468999999999865
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-47 Score=411.75 Aligned_cols=243 Identities=33% Similarity=0.578 Sum_probs=223.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..|+++|+||.+.++++.+|+..+.+ +|.|+.|..+|+..|.|||||||||||||+||||+|+|+|.+|++|.+.++.+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 46899999999999999999887665 99999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
+ +|+++..+|.+|..|+.++|||||+||+|+|.++|+.+ .....+.+||||++|||...+. +|.|||||
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~---------gV~viaAT 654 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERR---------GVYVIAAT 654 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccccc---------ceEEEeec
Confidence 9 68999999999999999999999999999999987643 4556789999999999987655 49999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhc--CCCccccccHHHHHHhcc--CCCHHHHHHHHHHHHHHHH
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA--GKQLAEDVNFEELVFRTV--GFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~--~~~l~~dvdl~~La~~t~--G~sgadL~~lv~eA~~~A~ 396 (686)
|+|+.+|||++||||||+.+++++|+.++|.+||+.+.+ +.++..|+|+++||+.+. ||||+||..||++|.+.|.
T Consensus 655 NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL 734 (802)
T KOG0733|consen 655 NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILAL 734 (802)
T ss_pred CCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 788999999999999988 9999999999999999998
Q ss_pred HhCC----------------CcccHHHHHHHHHHH
Q 005643 397 RKGH----------------SKIQQQDIVDVLDKQ 415 (686)
Q Consensus 397 r~~~----------------~~It~~dl~~Al~~~ 415 (686)
++.- ..+++.||++|+.++
T Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i 769 (802)
T KOG0733|consen 735 RESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRI 769 (802)
T ss_pred HHHHhhccccCcccceeeeeeeecHHHHHHHHHhc
Confidence 8620 136777999999875
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-44 Score=392.23 Aligned_cols=229 Identities=34% Similarity=0.571 Sum_probs=213.2
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~- 243 (686)
..++.|+||.|.+..-.+|.+++.++++|+.|..+|+.||+|||||||||||||+||+|+|+++++||+.+++.++++.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChh-HHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC
Q 005643 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (686)
Q Consensus 244 ~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e-~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (686)
.|++++++|++|++|+..+|||+||||||+|+++|...+.+ .++.+.|||+.||+...... ...+|+||+|||+
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~-----~g~~VlVIgATnR 338 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT-----KGDPVLVIGATNR 338 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc-----CCCCeEEEecCCC
Confidence 68899999999999999999999999999999988665444 45788999999999765421 2246999999999
Q ss_pred CCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 323 p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
|+.|||||+|+||||+.|.+..|+..+|.+||+..+++..+..++|+.+||..|+||.|+||..||.+|+..|+++
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-43 Score=348.13 Aligned_cols=244 Identities=33% Similarity=0.548 Sum_probs=230.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
.+|.+++.||.|.+-.|+++++.++. |...+.|.+.|+.+|+|||||||||||||+||+|+|+.....|+.+.+++|+.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 67899999999999999999999986 77888999999999999999999999999999999999999999999999999
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .|+|...+|++|..|+.++|+||||||+|+++.++- +.+.+....+-.||++||||....+ |-||
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~n---------vkvi 298 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTN---------VKVI 298 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccc---------eEEE
Confidence 8 589999999999999999999999999999987763 4566778899999999999887654 9999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
.+||+.+.|||||+||||+|++|+||+||..+++-+|.....+..+.+++|++.+..+....||+||..+|++|.+.|.|
T Consensus 299 matnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred EecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (686)
.++-.|...|+++|-..++
T Consensus 379 ~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 379 ENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred hcceeeeHHHHHHHHHhhc
Confidence 9999999999999988765
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-43 Score=349.34 Aligned_cols=244 Identities=31% Similarity=0.534 Sum_probs=225.0
Q ss_pred cCCcccccceecCcccHHHHHH-HHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDE-LMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~e-lv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
.+|.-+|+||.|.+...++|.+ ++-.+..+++|..+|+++|+|+|+|||||||||++|||.|...+..|+.+.+..++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 5778899999999865554444 334577888999999999999999999999999999999999999999999999999
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
+ .|.|++.+|+.|..|+..+|+||||||+|+++.+|. .++.+..+++-.||+++|||.+.. .|-||
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~---------~vKvi 314 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD---------RVKVI 314 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc---------ceEEE
Confidence 9 589999999999999999999999999999987763 356778889999999999987664 49999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
|+||+.+.|||||+|+||+|+.|+||.|+.+.|..|++.|.++....+|+++++||+.|.+|+|++...+|-+|.+.|.|
T Consensus 315 AATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALR 394 (424)
T KOG0652|consen 315 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALR 394 (424)
T ss_pred eecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (686)
++...|+.+|+.+++-.+.
T Consensus 395 r~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 395 RGATEVTHEDFMEGILEVQ 413 (424)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 9999999999999998765
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-43 Score=346.15 Aligned_cols=245 Identities=31% Similarity=0.534 Sum_probs=230.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
+.|..||+=|.|.+...++++++++. .+.|+.|..+|+..|+|+|||||||||||+||+|+|....+.|+.+|+++++.
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 45677888888889888899999986 89999999999999999999999999999999999999999999999999998
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccC----CCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~----~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .|+|...+|++|-.|+.++|+|||+||||++++.+ .+++++...+.-.||+++|||.... ++-||
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk---------nikvi 290 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK---------NIKVI 290 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc---------ceEEE
Confidence 8 58899999999999999999999999999998755 3467788899999999999987765 48999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
.|||+.+.|||||+||||+|+.|+||+|+.+.|.+||+.|.++..+...+++..+|...+|.||+++..+|.+|.+.|.|
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alr 370 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR 370 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (686)
+.+-.+|++||+-|+.+++.
T Consensus 371 errvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 371 ERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred HhhccccHHHHHHHHHHHHh
Confidence 99999999999999999874
No 15
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=346.48 Aligned_cols=238 Identities=31% Similarity=0.507 Sum_probs=218.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
..++++|+||+|++++|..-+-++.||+||++|..+ .|++||+|||||||||++|||+|+++++||+.+...++...
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 356789999999999999999999999999988764 48999999999999999999999999999999999999887
Q ss_pred -hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC--CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 244 -~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~--~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
+|.++.+++.+|+.|++.+|||+||||+|+++-.|.- -.......+|.||++|||...+.| |+.||||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG---------VvtIaaT 261 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG---------VVTIAAT 261 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc---------eEEEeec
Confidence 8999999999999999999999999999999754421 112345689999999999886654 9999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHH-HHHHHHHHHHHHhC
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIR-NLVNESGIMSVRKG 399 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~-~lv~eA~~~A~r~~ 399 (686)
|+|+.||+|+++ ||...|+|.+|+.++|.+|++.+++..++.-+.++..++..|.||||+||. .++..|...|+..+
T Consensus 262 N~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed 339 (368)
T COG1223 262 NRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED 339 (368)
T ss_pred CChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc
Confidence 999999999999 999999999999999999999999999999999999999999999999987 67888999999999
Q ss_pred CCcccHHHHHHHHHHH
Q 005643 400 HSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 400 ~~~It~~dl~~Al~~~ 415 (686)
+..|+.+|++.|+.+.
T Consensus 340 ~e~v~~edie~al~k~ 355 (368)
T COG1223 340 REKVEREDIEKALKKE 355 (368)
T ss_pred hhhhhHHHHHHHHHhh
Confidence 9999999999999873
No 16
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-43 Score=349.23 Aligned_cols=246 Identities=35% Similarity=0.578 Sum_probs=231.9
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
+++|.+|+.||.|+.+..+.|+++++. +-+|++|..+|+.+|+|||||||||||||++|||+|+..+.-|+.+-+|+++
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 468999999999999999999999986 8899999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccC----CCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~----~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
.. +++++..+|++|+.|+....||||+||||++++.+ .+++.+...++-.|++++|||... .++-|
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr---------gnikv 319 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR---------GNIKV 319 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC---------CCeEE
Confidence 88 78999999999999999999999999999998755 256778889999999999997654 45899
Q ss_pred EEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
+.+||+|+.|||||+||||+|+.++|.+||.+.|..||+.|.+......++-++.||+.++.-+|++|+.+|.+|.+.|+
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfai 399 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI 399 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (686)
+..+...|..||.+|+++++.
T Consensus 400 rarrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 400 RARRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred HHHhhhhhHHHHHHHHHHHHH
Confidence 998899999999999999874
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-43 Score=355.83 Aligned_cols=247 Identities=35% Similarity=0.575 Sum_probs=230.9
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
++.|.-+|.|+.|.++..+++++.++. |.+|+.|...|+++|+||+|||+||||||+||+|+|+.....|+.+-++++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 367788999999999999999999886 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
.. .+.|.+.+|.+|..|..++|+|+||||||+++.+|- ++..+..+++-.||+++|||.+.. .|-|
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg---------DvKv 327 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG---------DVKV 327 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccC---------CeEE
Confidence 88 589999999999999999999999999999998763 344566788889999999987654 4999
Q ss_pred EEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
|.|||+.+.|||||+||||+|+.|+|+.||...+..||+.|.....+..+++++.+......+||+||..+|.+|.++|.
T Consensus 328 imATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAl 407 (440)
T KOG0726|consen 328 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLAL 407 (440)
T ss_pred EEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHHh
Q 005643 397 RKGHSKIQQQDIVDVLDKQLLE 418 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~~ 418 (686)
|..+..++++||..|.++++..
T Consensus 408 RerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 408 RERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred HHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999999999998753
No 18
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-42 Score=360.06 Aligned_cols=244 Identities=30% Similarity=0.514 Sum_probs=217.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..+++.|+||+|..++|+.|+|.|-. +..| .|.+...+|.+|||++||||||||+||||||.|+|.-||.||.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mP-e~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMP-EFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhH-HHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 46889999999999999999998765 5555 455556788999999999999999999999999999999999999999
Q ss_pred hh-hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC--CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 243 SE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 243 ~~-~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~--~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
.+ |++++.+|-+|+.|+..+|++|||||||+|+++|++ .++..+++.+.||.+|||...... ...-|+|+||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e-----~~k~VmVLAA 358 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE-----NSKVVMVLAA 358 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc-----cceeEEEEec
Confidence 94 788999999999999999999999999999988764 345567889999999999876532 2334899999
Q ss_pred cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
||.||.||+||+| ||...|+||+|+.++|..+|+..++...+.++++++.|+..+.||||+||.++|++|.+.+.|+-
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999863
Q ss_pred C-----------------CcccHHHHHHHHHHH
Q 005643 400 H-----------------SKIQQQDIVDVLDKQ 415 (686)
Q Consensus 400 ~-----------------~~It~~dl~~Al~~~ 415 (686)
. ..|+++||+.|+.++
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v 469 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKV 469 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHc
Confidence 2 236777777777765
No 19
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.9e-41 Score=342.66 Aligned_cols=211 Identities=36% Similarity=0.533 Sum_probs=168.1
Q ss_pred cHHHHHHHHHHHHHhccccccchhHHhhhhcchhhHHHHHHHHHHHHHHHHHhhcCCCccceeEEeecCCcceeEEEeec
Q 005643 404 QQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYP 483 (686)
Q Consensus 404 t~~dl~~Al~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~~~i~p~g~~~~~~~~~p 483 (686)
|++||.+|+++++. |. ++....++.++++++|||||||||+++++|..+++.+++|+|+|..+|++.+.|
T Consensus 1 ~~~d~~~a~drv~~---G~-------~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~ 70 (213)
T PF01434_consen 1 TMEDIEEAIDRVLM---GP-------EKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTP 70 (213)
T ss_dssp -HHHHHHHHHHHHC---CS-------CCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECH
T ss_pred CHHHHHHHHHHHhc---Cc-------CcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEecc
Confidence 68999999999984 33 222356788899999999999999999999989999999999999999999999
Q ss_pred cccccccccccHHHHHHHHHHHhhhhHHHHHhcC-CCCCCCCcchHHHHHHHHHHHhhcccccc-cCccccccccccccC
Q 005643 484 REDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFG-DDVTDGGKDDLEKITKIAREMVISPQNAR-LGLAGLTRRVGLLDR 561 (686)
Q Consensus 484 ~e~~~~~~~~t~~~l~~~i~v~LgGRaAEel~fG-~~~ttGa~~Dl~~AT~iA~~mV~~~~~~~-~g~~~~~~~~g~~~~ 561 (686)
.++.. ..|+++++++|+++|||||||+++|| +++||||++||++||+||+.||++|||+. +|++.+...
T Consensus 71 ~~~~~---~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~------ 141 (213)
T PF01434_consen 71 DEDRY---IRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPN------ 141 (213)
T ss_dssp HTT-S---S-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEE------
T ss_pred chhcc---cccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeecc------
Confidence 88743 35999999999999999999999999 46999999999999999999999976543 555544322
Q ss_pred CCCCCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHH
Q 005643 562 PDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEK 639 (686)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~nr~~L~~lA~~LlekEtL~g~ei~~i 639 (686)
...+.+++..+. ...++|+++...+|+||+++|++||++|++||++||+.|++||++|+++|+|+++||++|
T Consensus 142 --~~~~~~~~~~~~----~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 142 --DDDEVFLGREWN----SRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp --E-S-SSS-E-------EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred --cccccccccccc----ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 111223333221 235789999999999999999999999999999999999999999999999999999986
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-41 Score=374.54 Aligned_cols=248 Identities=29% Similarity=0.505 Sum_probs=220.6
Q ss_pred CCcccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCc
Q 005643 160 VGYVSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (686)
Q Consensus 160 ~~~~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s 238 (686)
.+.++-|+++|+||.|.+++|.++.+-+.. |+.|+.|.. |.+...|||||||||||||++|||+|.|+...|++|.+.
T Consensus 661 iGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGP 739 (953)
T KOG0736|consen 661 IGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGP 739 (953)
T ss_pred cCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCH
Confidence 445678999999999999999998887775 777776654 888889999999999999999999999999999999999
Q ss_pred cccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC---ChhHHHHHHHHHHHhcCCcccCCcccccccccE
Q 005643 239 EFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK---DPRRRATFEALIAQLDGDKERTGIDRFSLRQAV 314 (686)
Q Consensus 239 ~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~---~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~V 314 (686)
++.+| +|++++++|++|++||..+|||||+||+|++++.|+.. +.-.++++.|||.+||+....+ ..+|
T Consensus 740 ELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~-------s~~V 812 (953)
T KOG0736|consen 740 ELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS-------SQDV 812 (953)
T ss_pred HHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC-------CCce
Confidence 99999 68999999999999999999999999999999877543 3346889999999999987532 3469
Q ss_pred EEEEecCCCCCCccccccCCccceEEEeCCC-CHHHHHHHHHHHhcCCCccccccHHHHHHhc-cCCCHHHHHHHHHHHH
Q 005643 315 IFICATNRPDELDLEFVRPGRIDRRLYIGLP-DAKQRVQIFDVHSAGKQLAEDVNFEELVFRT-VGFSGADIRNLVNESG 392 (686)
Q Consensus 315 iVIaaTN~p~~LD~aLlrpgRFd~~I~v~~P-d~~eR~~Il~~~l~~~~l~~dvdl~~La~~t-~G~sgadL~~lv~eA~ 392 (686)
.||+||||||.|||||+||||||+-++++++ |.+.+..+|+...++..++.++|+.++|+.. +.|||||+-.+|..|.
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~ 892 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAM 892 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999988 6778899999999999999999999999985 5799999999999999
Q ss_pred HHHHHhC-----------------CCcccHHHHHHHHHHH
Q 005643 393 IMSVRKG-----------------HSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 393 ~~A~r~~-----------------~~~It~~dl~~Al~~~ 415 (686)
+.|+++- .-.|+++||.+|.++.
T Consensus 893 l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l 932 (953)
T KOG0736|consen 893 LAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRL 932 (953)
T ss_pred HHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhc
Confidence 9998862 1148899999998874
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=362.71 Aligned_cols=244 Identities=33% Similarity=0.531 Sum_probs=224.3
Q ss_pred cCCcccccceecCcccHHHHHHHHH-HhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
+.|+++|+||+|.+.+|+++++.+. .+.+|..|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 5678999999999999999999987 589999999999999999999999999999999999999999999999998877
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .+.+...++.+|..|+..+||||||||+|+++.++.. .+.+....+.+++..|+++.... +++||
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~---------~v~VI 288 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT---------NVKVI 288 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC---------CEEEE
Confidence 6 5677888999999999999999999999999876532 23445678899999999875443 48999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
+|||+++.||++++||||||+.|+|++|+.++|..||+.++.+..+..++++..++..|.||||+||.++|++|.+.|.+
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r 368 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVR 368 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (686)
+++..|+++||.+|+.+++
T Consensus 369 ~~~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 369 KNRYVILPKDFEKGYKTVV 387 (398)
T ss_pred cCCCccCHHHHHHHHHHHH
Confidence 9999999999999999875
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.1e-38 Score=350.20 Aligned_cols=244 Identities=35% Similarity=0.604 Sum_probs=223.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..++++|+||.|.++.++.+.+.+.+ +.+|..|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 56789999999999999999998875 89999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .+.+...++.+|..|+..+||||||||+|++++++.. ++.+..+++.+++.+++++... .+++||
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~---------~~v~VI 274 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR---------GNVKII 274 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC---------CCEEEE
Confidence 6 4677788999999999999999999999999866532 2345567788899999886543 248999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
+|||+++.+|++++||||||+.|+|++|+.++|.+||+.|+++..+..++++..+|..|.||+|+||.++|++|+..|.+
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (686)
++...|+.+||.+|++++.
T Consensus 355 ~~~~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 355 DDRTEVTMEDFLKAIEKVM 373 (389)
T ss_pred cCCCCcCHHHHHHHHHHHh
Confidence 9999999999999999875
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=7.2e-39 Score=353.03 Aligned_cols=245 Identities=35% Similarity=0.580 Sum_probs=224.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
+.+..+|+||.|.++.++++.+.+.. +.+|..|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 56779999999999999999999974 89999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .+.+...++.+|..|+.+.||||||||||+++.++. +++.+...++.++|.+|+++.... ++.||
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~---------~V~VI 326 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG---------DVKVI 326 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC---------CeEEE
Confidence 7 467778899999999999999999999999987653 233445677889999999875433 48999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
+|||+++.||++++||||||++|+|++||.++|.+||+.|+.+..+..++++..++..+.||||+||.++|++|++.|.+
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr 406 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (686)
+++..|+++||.+|+++++.
T Consensus 407 ~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 407 ERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred hcCCccCHHHHHHHHHHHHh
Confidence 99999999999999999863
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-38 Score=354.11 Aligned_cols=244 Identities=38% Similarity=0.626 Sum_probs=224.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
...+.++|.|+.|.+++|+.+++.+.+ ++.|+.|...|.++|+|+|||||||||||++|+|+|.+++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 357889999999999999999999987 7788888888999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChh-HHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e-~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
+. .+.+++.++.+|..|++.+||||||||+|++.+.++.+... ....+++||.+|++.....+ |+||+|
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~---------v~vi~a 384 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG---------VLVIAA 384 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc---------eEEEec
Confidence 88 68999999999999999999999999999999877654433 36899999999999776554 999999
Q ss_pred cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCC--ccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
||+|+.+|+|++||||||+.++|++||.++|.+||+.|++... +..++++..++..|.||||+||.++|++|++.+.+
T Consensus 385 TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~ 464 (494)
T COG0464 385 TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALR 464 (494)
T ss_pred CCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998443 46889999999999999999999999999999999
Q ss_pred hC-CCcccHHHHHHHHHHH
Q 005643 398 KG-HSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 398 ~~-~~~It~~dl~~Al~~~ 415 (686)
+. ...|+++|+.+|+.++
T Consensus 465 ~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 465 EARRREVTLDDFLDALKKI 483 (494)
T ss_pred HhccCCccHHHHHHHHHhc
Confidence 88 6789999999999873
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.6e-37 Score=364.85 Aligned_cols=243 Identities=36% Similarity=0.585 Sum_probs=221.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..+.++|+||+|.+++|+.|++.+.+ ++.+..|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 35678999999999999999999986 88999999999999999999999999999999999999999999999999988
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC--ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~--~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
. .+.+...++.+|..|+..+||||||||+|+++++++.. +...+..+++||.+||+.... .+|+||+|
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~---------~~v~vI~a 596 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL---------SNVVVIAA 596 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC---------CCEEEEEe
Confidence 7 67888899999999999999999999999998766432 233567899999999997543 34999999
Q ss_pred cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
||+|+.||++++||||||+.|++++|+.++|.+||+.+.++.++..++|+..||..|.||||+||.++|++|++.|.++.
T Consensus 597 Tn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~ 676 (733)
T TIGR01243 597 TNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRES 676 (733)
T ss_pred CCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998842
Q ss_pred ------------------CCcccHHHHHHHHHHH
Q 005643 400 ------------------HSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 400 ------------------~~~It~~dl~~Al~~~ 415 (686)
...|+++||.+|+.++
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 677 IGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred hhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 1258999999999875
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-38 Score=345.22 Aligned_cols=226 Identities=30% Similarity=0.534 Sum_probs=210.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
......|.||.|..++|+.|.+++.+ -+.|..|...+++.+.|||||||||||||+||.|+|..++..|+++.+.++..
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 34458999999999999999999998 67888999999999999999999999999999999999999999999999999
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCC-hhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD-PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~-~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
. .|.+++.+|++|.+|+..+|||||+||+|+++++|+..+ .-.++.+||||.+|||...-.| |.|+|||
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G---------V~i~aaT 810 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG---------VYILAAT 810 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce---------EEEEEec
Confidence 9 478899999999999999999999999999999886443 4468899999999999876554 9999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
.+|+.|||||+||||+|+.++-+.|+..+|.+|++........+.++|++.+|..|.||||+||..|+-.|.+.|+.+
T Consensus 811 sRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 811 SRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999899999999999999999999999999999999888764
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=322.26 Aligned_cols=226 Identities=29% Similarity=0.504 Sum_probs=200.1
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.++|++.|+||+|.+.+|+.|+|.|-. ++-|..|. .+-.+.+|+||||||||||++||+|+|.|++..||++|.++++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt-GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT-GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhc-CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 468999999999999999999998765 55554444 3456789999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
+. .|++++.++.+|+.|+++.|+||||||||++++++..+ ++..+++-..+|.+|.|...+. ++|+|++|
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~--------~gvLVLgA 275 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN--------DGVLVLGA 275 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC--------CceEEEec
Confidence 99 58889999999999999999999999999999877554 4445678889999999976543 46999999
Q ss_pred cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
||-||.||.|++| ||++.|++|+|+...|..+|+.|+...+.. .+.|+.+|++.|.||||+||.-+|+.|.+..+|+
T Consensus 276 TNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 276 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 9999999999999 999999999999999999999999876643 5678999999999999999999999999887765
Q ss_pred C
Q 005643 399 G 399 (686)
Q Consensus 399 ~ 399 (686)
-
T Consensus 354 v 354 (439)
T KOG0739|consen 354 V 354 (439)
T ss_pred h
Confidence 3
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=6e-37 Score=342.43 Aligned_cols=238 Identities=24% Similarity=0.359 Sum_probs=207.8
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~- 243 (686)
.++.+|+||.|.+.+|+.+++....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+...
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 46789999999999999988765433 334567789999999999999999999999999999999999999998877
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 005643 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (686)
Q Consensus 244 ~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~--~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (686)
.+.+..+++.+|..|+..+||||||||||.++.++. +.+....+.+++++..|+... .+|+||+|||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~-----------~~V~vIaTTN 368 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK-----------SPVFVVATAN 368 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC-----------CceEEEEecC
Confidence 678889999999999999999999999999976432 233455678889999887532 3489999999
Q ss_pred CCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCc--cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 322 ~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l--~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
+++.||++++||||||+.++|+.|+.++|.+||+.|+.+... ..+.++..||..|.||||+||+++|++|...|..++
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~ 448 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK 448 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999987543 247899999999999999999999999999998776
Q ss_pred CCcccHHHHHHHHHHHH
Q 005643 400 HSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 400 ~~~It~~dl~~Al~~~~ 416 (686)
+ .++.+|+..|+.+..
T Consensus 449 ~-~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 449 R-EFTTDDILLALKQFI 464 (489)
T ss_pred C-CcCHHHHHHHHHhcC
Confidence 4 589999999998764
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-37 Score=322.26 Aligned_cols=227 Identities=31% Similarity=0.548 Sum_probs=206.5
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhC-CccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERG-VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g-~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
+....++|+||.|.+++++.|++.|.. ++.|+.|...+ .++|+|||||||||||||++|+|+|+++|.+|+.++.+.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 467889999999999999999999876 88888886433 5789999999999999999999999999999999999999
Q ss_pred cch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 241 TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 241 ~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
.+. ++++.+.++.+|..|.+.+||||||||+|.+.+.|..+ ++.....-+++....||+.++.. ..|+|+|
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~-------~rVlVlg 236 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDS-------ERVLVLG 236 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCC-------ceEEEEe
Confidence 998 68889999999999999999999999999998766433 44456677899999999876543 4599999
Q ss_pred ecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 319 aTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
|||+|..||.|++| |+.+.++|+.|+..+|.+||+..+++.++.+++|+.++|+.|.||||.||.++|+.|+...+|.
T Consensus 237 ATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999988774
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3.9e-36 Score=327.86 Aligned_cols=243 Identities=35% Similarity=0.601 Sum_probs=220.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..+.++|+||.|.++.++.+.+.+.. +.+|..|...|..+|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 56789999999999999999998875 78999999999999999999999999999999999999999999999888876
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .+.+...++.+|..++...|+||||||+|.++.++.. ++.+...++.+++.+++++... .++.||
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~---------~~v~vI 265 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR---------GNVKVI 265 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC---------CCEEEE
Confidence 6 4667778999999999999999999999999765432 2345567788999999886433 248999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
+|||+++.+|++++||||||+.|+|+.|+.++|.+||+.|+.+..+..++++..++..|.||+|+||.++|++|+..|.+
T Consensus 266 ~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 266 AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred EecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~ 415 (686)
+++..|+.+||.+|++++
T Consensus 346 ~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 346 EERDYVTMDDFIKAVEKV 363 (364)
T ss_pred hCCCccCHHHHHHHHHHh
Confidence 999999999999999875
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-37 Score=316.27 Aligned_cols=243 Identities=33% Similarity=0.542 Sum_probs=222.8
Q ss_pred cCCcccccceecCcccHHHHHHHHH-HhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
+...++|+.+-|.-+...++.+.+. .+.+|..|.+.|+++|+|++||||||||||++|+++|..+|++|+.++.+.+.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 3456899999998877777777776 499999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .|+.++.+|+.|..|+...|||||+||||++++++.+ .+.+...|+-.|+++|+++.... .|-+|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~---------rVk~I 275 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLH---------RVKTI 275 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcc---------cccEE
Confidence 8 5888999999999999999999999999999987632 35567789999999999987653 48999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
+|||+|+.|||+|+||||+|+.+++|+|+...|..|++.|.........+|.+.+.+.+.||+|+|+.+.|.+|-+.|++
T Consensus 276 matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 276 MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred EecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccc
Confidence 99999999999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~ 415 (686)
..+..+-++|+..++.++
T Consensus 356 ~~~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 356 EERDEVLHEDFMKLVRKQ 373 (388)
T ss_pred hhhHHHhHHHHHHHHHHH
Confidence 999999999999998876
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=6.6e-34 Score=317.70 Aligned_cols=247 Identities=27% Similarity=0.406 Sum_probs=199.2
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC----------
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---------- 231 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~---------- 231 (686)
...|+++|+||.|.++.++.+++.+.. +.+|..|...|+++|+|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 356789999999999999988888765 889999999999999999999999999999999999998655
Q ss_pred eEEEeCccccch-hhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhccCCCC--ChhHHHHHHHHHHHhcCCcccCC
Q 005643 232 FVFASGAEFTDS-EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARK--DPRRRATFEALIAQLDGDKERTG 304 (686)
Q Consensus 232 fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~--~~e~~~~l~~LL~~ld~~~~~~~ 304 (686)
|+.++++++... .+.+...++.+|..|+.. .||||||||+|+++++++.+ ++.....+++||..||++....
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~- 332 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLD- 332 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCC-
Confidence 556667777766 567788899999998864 69999999999998765432 3334567899999999976433
Q ss_pred cccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC-CCccc---------cccHHHHHH
Q 005643 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG-KQLAE---------DVNFEELVF 374 (686)
Q Consensus 305 ~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~-~~l~~---------dvdl~~La~ 374 (686)
+|+||+|||+++.||+|++||||||++|+|++|+.++|.+||+.|+.. .++.. ..++..+++
T Consensus 333 --------~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 333 --------NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQ 404 (512)
T ss_pred --------ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHH
Confidence 489999999999999999999999999999999999999999998764 23311 112222222
Q ss_pred h-----------------------------ccCCCHHHHHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHHHHh
Q 005643 375 R-----------------------------TVGFSGADIRNLVNESGIMSVRK----GHSKIQQQDIVDVLDKQLLE 418 (686)
Q Consensus 375 ~-----------------------------t~G~sgadL~~lv~eA~~~A~r~----~~~~It~~dl~~Al~~~~~~ 418 (686)
. +..+||++|+++|.+|...|+++ +...|+.+|+..|+.+-..+
T Consensus 405 ~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 405 RAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred HHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcc
Confidence 2 34578888888888888887765 34568888888888876543
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=320.97 Aligned_cols=234 Identities=30% Similarity=0.508 Sum_probs=213.5
Q ss_pred CcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~- 243 (686)
..++ .++.|....-..+++.+.+ +..|..|...|.++|+|+|+|||||||||.+++++|++.++.++.++++++...
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4455 6777777777788888876 888999999999999999999999999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHhcC-CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC
Q 005643 244 EKSGAARINEMFSIARRNA-PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (686)
Q Consensus 244 ~~~~~~~vr~lF~~Ak~~~-P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (686)
.+++.+.+|..|+.|.+++ |+||||||+|++++++...+.....+..+|+..||+..... .++||+|||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~---------~vivl~atnr 329 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDA---------KVIVLAATNR 329 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcC---------cEEEEEecCC
Confidence 6889999999999999999 99999999999999887666656778999999999987443 4999999999
Q ss_pred CCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc
Q 005643 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSK 402 (686)
Q Consensus 323 p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~ 402 (686)
|+.||++++| ||||+.+.+..|+..+|.+|++.+.++.++..++++..+|..|.||+|+||..+|++|.+.+.++
T Consensus 330 p~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---- 404 (693)
T KOG0730|consen 330 PDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---- 404 (693)
T ss_pred ccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----
Confidence 9999999999 99999999999999999999999999999998899999999999999999999999999999887
Q ss_pred ccHHHHHHHHHHH
Q 005643 403 IQQQDIVDVLDKQ 415 (686)
Q Consensus 403 It~~dl~~Al~~~ 415 (686)
+++++..|+..+
T Consensus 405 -~~~~~~~A~~~i 416 (693)
T KOG0730|consen 405 -TLEIFQEALMGI 416 (693)
T ss_pred -hHHHHHHHHhcC
Confidence 788888877654
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=7.7e-31 Score=309.86 Aligned_cols=243 Identities=36% Similarity=0.582 Sum_probs=215.1
Q ss_pred CCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
.++++|+||+|.+++++.+++++.+ +++|..|..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4678999999999999999999876 889999999999999999999999999999999999999999999999998876
Q ss_pred -hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 005643 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (686)
Q Consensus 244 -~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (686)
.+.....++.+|+.|..+.|+||||||+|++.+++... +......+++|+..|++..... .++||++||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~---------~vivI~atn 322 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG---------RVIVIGATN 322 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC---------CEEEEeecC
Confidence 56777889999999999999999999999998765432 2233567889999998875432 489999999
Q ss_pred CCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC--
Q 005643 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG-- 399 (686)
Q Consensus 322 ~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~-- 399 (686)
+++.+|++++|+|||++.+.++.|+.++|.+||+.+.++..+..++++..++..|.||+++|+..++++|+..+.++.
T Consensus 323 ~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 323 RPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIR 402 (733)
T ss_pred ChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999888888999999999999999999999999999887652
Q ss_pred -----------------CCcccHHHHHHHHHHHH
Q 005643 400 -----------------HSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 400 -----------------~~~It~~dl~~Al~~~~ 416 (686)
...++.+|+..|+..+.
T Consensus 403 ~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ 436 (733)
T TIGR01243 403 EGKINFEAEEIPAEVLKELKVTMKDFMEALKMVE 436 (733)
T ss_pred ccccccccccccchhcccccccHHHHHHHHhhcc
Confidence 12467888888887653
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=288.72 Aligned_cols=256 Identities=27% Similarity=0.458 Sum_probs=208.0
Q ss_pred cCCcccccceecCcccHHHHHHH-----HHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC-CeEEEeC
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDEL-----MIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-PFVFASG 237 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~el-----v~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-~fi~is~ 237 (686)
-.|.-.|+++ |.+...++...+ ..-+-.|..-.++|+++-+|+|||||||||||++||.|..-++. +--.+++
T Consensus 212 i~Pdf~Fe~m-GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 212 INPDFNFESM-GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred cCCCCChhhc-ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3566778887 333344444333 33456777888999999999999999999999999999988764 4456899
Q ss_pred ccccch-hhhHHHHHHHHHHHHHhcC--------CeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcCCcccCCc
Q 005643 238 AEFTDS-EKSGAARINEMFSIARRNA--------PAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDGDKERTGI 305 (686)
Q Consensus 238 s~~~~~-~~~~~~~vr~lF~~Ak~~~--------P~ILfIDEiDal~~~~~~---~~~e~~~~l~~LL~~ld~~~~~~~~ 305 (686)
.++.+. +|++++.+|.+|..|.+.. =-||++||||+++.+|++ +..-.++.+||||..|||...-.
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN-- 368 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN-- 368 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh--
Confidence 999988 7899999999999886422 249999999999987653 34456899999999999976543
Q ss_pred ccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC----CCccccccHHHHHHhccCCCH
Q 005643 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG----KQLAEDVNFEELVFRTVGFSG 381 (686)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~La~~t~G~sg 381 (686)
+|+||+.||+.+.+|+||+|||||..++++.+||+.+|.+|++.|.+. ..+..|+|+.+||..|..|||
T Consensus 369 -------NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSG 441 (744)
T KOG0741|consen 369 -------NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSG 441 (744)
T ss_pred -------cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCch
Confidence 599999999999999999999999999999999999999999999764 356789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhC---------------CCcccHHHHHHHHHHHHHhccccccchhHHhhh
Q 005643 382 ADIRNLVNESGIMSVRKG---------------HSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKC 432 (686)
Q Consensus 382 adL~~lv~eA~~~A~r~~---------------~~~It~~dl~~Al~~~~~~~~g~~l~~~~~~~~ 432 (686)
++|+.+++.|...|..+. +-.|+++||..|++++.. ....++++.+++
T Consensus 442 AEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP---AFG~see~l~~~ 504 (744)
T KOG0741|consen 442 AELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP---AFGISEEDLERF 504 (744)
T ss_pred hHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc---ccCCCHHHHHHH
Confidence 999999999988887652 125899999999997642 233455555443
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=1.7e-30 Score=274.77 Aligned_cols=223 Identities=17% Similarity=0.175 Sum_probs=168.9
Q ss_pred CcccccceecC-cccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 166 TKSMYKEVVLG-GDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 166 ~~~~f~dvvG~-~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
...+|+++.|. --.+.-+..+.-. .||-. ...|+++|++++||||||||||++|+++|+++|++|+.++++++.+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l--~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFL--ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhh--hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34577787543 3334444444322 22221 12578999999999999999999999999999999999999999988
Q ss_pred -hhhHHHHHHHHHHHHHh-----cCCeEEEEccchhhhccCCCCChh-HHHHH-HHHHHHhcCCcccCCcc---cccccc
Q 005643 244 -EKSGAARINEMFSIARR-----NAPAFVFVDEIDAIAGRHARKDPR-RRATF-EALIAQLDGDKERTGID---RFSLRQ 312 (686)
Q Consensus 244 -~~~~~~~vr~lF~~Ak~-----~~P~ILfIDEiDal~~~~~~~~~e-~~~~l-~~LL~~ld~~~~~~~~~---~~~~~~ 312 (686)
.|++++.+|.+|..|+. .+||||||||||+++++++..+.. ..+.+ .+|++.||+...-.-.. ......
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 78999999999999975 469999999999999877543322 24444 78999998743211000 012345
Q ss_pred cEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccC----CCHHHHHHHH
Q 005643 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG----FSGADIRNLV 388 (686)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G----~sgadL~~lv 388 (686)
+|.||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.|++...+. ..|+..|+..++| |.|+--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 6999999999999999999999999965 5899999999999999988776 5788999988877 4565555555
Q ss_pred HHHHH
Q 005643 389 NESGI 393 (686)
Q Consensus 389 ~eA~~ 393 (686)
.++..
T Consensus 345 d~~v~ 349 (413)
T PLN00020 345 DDEVR 349 (413)
T ss_pred HHHHH
Confidence 55443
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-30 Score=302.13 Aligned_cols=244 Identities=30% Similarity=0.528 Sum_probs=210.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeC
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASG 237 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~ 237 (686)
.+..++|++|.|.+.+++.|+|.|.+ |-.|+.|..+++.+|+|||+|||||||||+.|+|+|..+ .+-|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 35678999999999999999999986 889999999999999999999999999999999999876 456788888
Q ss_pred ccccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 238 AEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 238 s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
.+..+. ++.....++.+|+.|++..|+|||+||||-+++.+.. ........+..||..|||..... .|+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRg---------qVv 408 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRG---------QVV 408 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCC---------ceE
Confidence 888877 6888999999999999999999999999999887643 34456778899999999977654 499
Q ss_pred EEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005643 316 FICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (686)
Q Consensus 316 VIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~ 394 (686)
||+|||+|+.+|||++||||||+.++|++|+.+.|.+|+..|.++-.-. ...-+..||..|.||-|+||+.+|.+|++.
T Consensus 409 vigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~ 488 (1080)
T KOG0732|consen 409 VIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALI 488 (1080)
T ss_pred EEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999997754421 222368899999999999999999999999
Q ss_pred HHHhCCC----------------cccHHHHHHHHHHHH
Q 005643 395 SVRKGHS----------------KIQQQDIVDVLDKQL 416 (686)
Q Consensus 395 A~r~~~~----------------~It~~dl~~Al~~~~ 416 (686)
+.++... .|...||..|+.++.
T Consensus 489 ~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ 526 (1080)
T KOG0732|consen 489 ALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRIT 526 (1080)
T ss_pred hhccccCeeecccccccccchhhhhhhHhhhhhhhccC
Confidence 9987432 255566666666554
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=274.68 Aligned_cols=225 Identities=31% Similarity=0.461 Sum_probs=195.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCC-chhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGN-PMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~-p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..+++.|+|++|.+.+|+.+.+.+-+.-. |..|..+ ..+++|+||.||||||||+|++|||.|++.-|+.++++.+..
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 35678999999999999999999998555 6555543 346789999999999999999999999999999999999999
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
. .|.++..++.+|..|+..+|+|+||||+|.+..++.. .++.......++|.++++..... .+.|+||+||
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~-------~drvlvigaT 297 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAP-------DDRVLVIGAT 297 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCC-------CCeEEEEecC
Confidence 8 5888899999999999999999999999999987643 34445577888999988876554 2469999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC-CccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-QLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
|+|+.+|.|++| ||.+.+++|+|+.+.|..+|+..+... ....+.|+..|++.|.|||+.||.++|.+|++--.+.
T Consensus 298 N~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 298 NRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred CCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhh
Confidence 999999999999 999999999999999999999887665 3345678999999999999999999999998765554
No 39
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.1e-25 Score=246.35 Aligned_cols=266 Identities=22% Similarity=0.292 Sum_probs=213.0
Q ss_pred HHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhhHHHHHHHHHHHHHhc
Q 005643 183 LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRN 261 (686)
Q Consensus 183 L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~ 261 (686)
+.++++.+.-+..-...+......+||+|+||||||++++++|.++|.+++.++|.++... ....+..+...|..|+..
T Consensus 410 ~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~ 489 (953)
T KOG0736|consen 410 VLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRC 489 (953)
T ss_pred HHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhc
Confidence 3366666666655555666777889999999999999999999999999999999999887 567788899999999999
Q ss_pred CCeEEEEccchhhhccCCCCChh-HHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEE
Q 005643 262 APAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRL 340 (686)
Q Consensus 262 ~P~ILfIDEiDal~~~~~~~~~e-~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I 340 (686)
.|+|||+-++|.++..+.++.+. ..+.++.++. .+.+.. ...+++||++|+..+.+++.+++ -|-..|
T Consensus 490 ~pavifl~~~dvl~id~dgged~rl~~~i~~~ls-~e~~~~--------~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei 558 (953)
T KOG0736|consen 490 SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLS-NEDFKF--------SCPPVIVVATTSSIEDLPADIQS--LFLHEI 558 (953)
T ss_pred CceEEEEeccceeeecCCCchhHHHHHHHHHHHh-cccccC--------CCCceEEEEeccccccCCHHHHH--hhhhhc
Confidence 99999999999997544332222 2334444444 222221 23459999999999999999998 788899
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh---CC-----------------
Q 005643 341 YIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK---GH----------------- 400 (686)
Q Consensus 341 ~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~---~~----------------- 400 (686)
.++.|+.++|.+||++++....+..++.+..++.+|.||+.+++..++..+-..+..+ ..
T Consensus 559 ~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~ 638 (953)
T KOG0736|consen 559 EVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAG 638 (953)
T ss_pred cCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcccccccccc
Confidence 9999999999999999999999999999999999999999999999987763222111 11
Q ss_pred CcccHHHHHHHHHHHHHhccccccchhHHhhhhcchhhHHHHHHHHHHHHHHHHHhhcCCCccceeEEeecCCcceeEEE
Q 005643 401 SKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISV 480 (686)
Q Consensus 401 ~~It~~dl~~Al~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~~~i~p~g~~~~~~~ 480 (686)
..++++||.+|+++. -.|..-||+|+.+|++.|+|++++...+.++..|+
T Consensus 639 ~~l~~edf~kals~~------------------------------~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTI 688 (953)
T KOG0736|consen 639 FLLTEEDFDKALSRL------------------------------QKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTI 688 (953)
T ss_pred ceecHHHHHHHHHHH------------------------------HHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHh
Confidence 245666666666553 12556789999999999999999999999999999
Q ss_pred eeccccccc
Q 005643 481 FYPREDTID 489 (686)
Q Consensus 481 ~~p~e~~~~ 489 (686)
++|..++..
T Consensus 689 qlPL~hpeL 697 (953)
T KOG0736|consen 689 QLPLKHPEL 697 (953)
T ss_pred cCcccChhh
Confidence 999988643
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.3e-23 Score=217.83 Aligned_cols=233 Identities=26% Similarity=0.430 Sum_probs=181.2
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~ 244 (686)
..+..|++||.....+..++.+...-.|....+ .+-++||+|||||||||++||.+|...|..+-.+++.++....
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~----apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG 424 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQ----APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG 424 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhccccccc----chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc
Confidence 445569999999999999999988877774333 4678999999999999999999999999999999999998887
Q ss_pred hhHHHHHHHHHHHHHhcC-CeEEEEccchhhhccCCC--CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 005643 245 KSGAARINEMFSIARRNA-PAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (686)
Q Consensus 245 ~~~~~~vr~lF~~Ak~~~-P~ILfIDEiDal~~~~~~--~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (686)
..+...+..+|++|++.. .-+|||||.|++.-++.. -+......+|.||-.--. . ...++++.+||
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd-q----------SrdivLvlAtN 493 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-Q----------SRDIVLVLATN 493 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc-c----------ccceEEEeccC
Confidence 788888999999998854 568999999999865543 345567788888865322 1 12488999999
Q ss_pred CCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCc------------------------cc---cccHHHHHH
Q 005643 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL------------------------AE---DVNFEELVF 374 (686)
Q Consensus 322 ~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l------------------------~~---dvdl~~La~ 374 (686)
+|..+|.|+-. |||..|+||+|..++|..+|..|+.+.-+ .. +--+.+.|+
T Consensus 494 rpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk 571 (630)
T KOG0742|consen 494 RPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK 571 (630)
T ss_pred CccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH
Confidence 99999999998 99999999999999999999887642211 10 112567889
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
.|.||||++|..|+-.-...+.......++..-+++.++.
T Consensus 572 kTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~y 611 (630)
T KOG0742|consen 572 KTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDY 611 (630)
T ss_pred hccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 9999999999999864443333333334555445444443
No 41
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-23 Score=224.45 Aligned_cols=205 Identities=22% Similarity=0.337 Sum_probs=163.6
Q ss_pred cccccceecCcccHH-HHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhh
Q 005643 167 KSMYKEVVLGGDVWD-LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEK 245 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~-~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~ 245 (686)
+.||+.|+-..+.|+ .+.++.+|+++..-|.+.|.+..||.|||||||||||+++-|+|++++..++-++.++.....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~- 275 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDS- 275 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcH-
Confidence 489999998888876 677899999999999999999999999999999999999999999999999988876655432
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEccchhhhccC--CCC----C--hhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 246 SGAARINEMFSIARRNAPAFVFVDEIDAIAGRH--ARK----D--PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 246 ~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~--~~~----~--~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
.++.+...+.. .+||+|.+||+-..-+ ... . ....-++..||+.+||.-+..+.. -|||
T Consensus 276 ----dLr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~E-------RIiv 342 (457)
T KOG0743|consen 276 ----DLRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDE-------RIIV 342 (457)
T ss_pred ----HHHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCc-------eEEE
Confidence 27777766544 4799999999865321 111 1 123468999999999998776533 3899
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccC--CCHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG--FSGADIRNL 387 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G--~sgadL~~l 387 (686)
.|||+++.|||||+||||+|.+|+++..+.++-+.+++.++.... +..-+.++.+...+ .||||++..
T Consensus 343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999999999986533 12223444444333 589998654
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=7.8e-21 Score=175.72 Aligned_cols=129 Identities=36% Similarity=0.662 Sum_probs=112.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhhHHHHHHHHHHHHHhcC-CeEEEEccchhhhccC-CCCCh
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNA-PAFVFVDEIDAIAGRH-ARKDP 283 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~~-P~ILfIDEiDal~~~~-~~~~~ 283 (686)
|||+||||||||++|+++|+.++.+++.++++++... .+...+.++.+|..++... ||||||||+|.+.... ...+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 6999999999999999999999999999999999855 6778889999999999988 9999999999998765 23445
Q ss_pred hHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCC
Q 005643 284 RRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (686)
Q Consensus 284 e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~ 344 (686)
.....++.|+..++..... ..+++||+|||.++.++++++| +||++.|++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccc--------cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5677889999999987653 2359999999999999999998 89999999874
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=1.6e-20 Score=198.34 Aligned_cols=221 Identities=18% Similarity=0.217 Sum_probs=160.9
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhhCCccC---ceEEEEcCCCCcHHHHHHHHHHHh---C----CCeEEEeCcc
Q 005643 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFV---RGVLLSGPPGTGKTLFARTLAKES---G----LPFVFASGAE 239 (686)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p---~gvLL~GPPGTGKT~LAralA~e~---g----~~fi~is~s~ 239 (686)
+++++|.+++|+.+.+++.++..+..+...|...+ .++||+||||||||++|+++|+.+ | .+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 45899999999999999999887777777887654 358999999999999999998875 2 3689999888
Q ss_pred ccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 240 FTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 240 ~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
+... .+......+.+|+.|. ++||||||+|.+...+ +.++.....++.|+..|+... .+++||+
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~-~~~~~~~e~~~~L~~~me~~~-----------~~~~vI~ 166 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPD-NERDYGSEAIEILLQVMENQR-----------DDLVVIF 166 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCC-CccchHHHHHHHHHHHHhcCC-----------CCEEEEE
Confidence 8765 4555566777777763 4799999999996432 223344567788888887532 2377888
Q ss_pred ecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCC--ccccccHHHHHH----h--ccCCC-HHHH
Q 005643 319 ATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVF----R--TVGFS-GADI 384 (686)
Q Consensus 319 aTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~----~--t~G~s-gadL 384 (686)
+++... .++|+|++ ||+.+|+|++++.+++.+|++.++.... +.++. ...+.. . ...|. ++++
T Consensus 167 ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~v 243 (287)
T CHL00181 167 AGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSV 243 (287)
T ss_pred eCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHH
Confidence 776422 34689999 9999999999999999999998886543 33222 222222 1 23444 8999
Q ss_pred HHHHHHHHHHHHHh----CCCcccHHHH
Q 005643 385 RNLVNESGIMSVRK----GHSKIQQQDI 408 (686)
Q Consensus 385 ~~lv~eA~~~A~r~----~~~~It~~dl 408 (686)
.+++..|......+ +...++.+|+
T Consensus 244 rn~ve~~~~~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 244 RNALDRARMRQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999887655443 3334555554
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=3.3e-20 Score=193.67 Aligned_cols=210 Identities=17% Similarity=0.202 Sum_probs=153.9
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCcc---CceEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEEeCc
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQF---VRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFASGA 238 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~---p~gvLL~GPPGTGKT~LAralA~e~-------g~~fi~is~s 238 (686)
.+++++|.+++|+.+++++.++.........|... +.++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36789999999999999999987766666666653 4578999999999999999999864 2378889999
Q ss_pred cccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 239 EFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 239 ~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
++... .+.....++.+|+.|. ++||||||+|.+.. .+..+.....++.|+..|+.... ++++|
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~--~~~~~~~~~~i~~Ll~~~e~~~~-----------~~~vi 147 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR--GGEKDFGKEAIDTLVKGMEDNRN-----------EFVLI 147 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc--CCccchHHHHHHHHHHHHhccCC-----------CEEEE
Confidence 88776 4566777888888774 57999999999963 12223345577889998876432 25666
Q ss_pred EecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCc--cccccHHHHHHh---------ccCCCH
Q 005643 318 CATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFR---------TVGFSG 381 (686)
Q Consensus 318 aaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l--~~dvdl~~La~~---------t~G~sg 381 (686)
++++..+ .++|++.+ ||+..|.|+.++.+++.+|++.++..... .++ -+..++.. ...-++
T Consensus 148 la~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~-a~~~l~~~~~~~~~~~~~~~gn~ 224 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEE-AKWKLREHLYKVDQLSSREFSNA 224 (261)
T ss_pred ecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHH-HHHHHHHHHHHHHhccCCCCchH
Confidence 6554322 46889998 99999999999999999999988875443 222 13333221 112367
Q ss_pred HHHHHHHHHHHHHHHH
Q 005643 382 ADIRNLVNESGIMSVR 397 (686)
Q Consensus 382 adL~~lv~eA~~~A~r 397 (686)
+.+.|++..|......
T Consensus 225 R~~~n~~e~a~~~~~~ 240 (261)
T TIGR02881 225 RYVRNIIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887765543
No 45
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=6.1e-20 Score=193.82 Aligned_cols=210 Identities=16% Similarity=0.157 Sum_probs=157.6
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhhCCcc---CceEEEEcCCCCcHHHHHHHHHHHhC-------CCeEEEeCccc
Q 005643 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQF---VRGVLLSGPPGTGKTLFARTLAKESG-------LPFVFASGAEF 240 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~---p~gvLL~GPPGTGKT~LAralA~e~g-------~~fi~is~s~~ 240 (686)
++++|.+++|+.+.+++.++..+..+.+.|... ..++||+||||||||++|+++|..+. .+|++++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 368999999999999999999888888888764 34899999999999999999988652 37999999888
Q ss_pred cch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 241 TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 241 ~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
... .+.....++.+|+.|. +++|||||++.+.+.+ ...+.....++.|+..|+... .+++||+|
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~-~~~~~~~~~~~~Ll~~le~~~-----------~~~~vI~a 166 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPD-NERDYGQEAIEILLQVMENQR-----------DDLVVILA 166 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCC-CccchHHHHHHHHHHHHhcCC-----------CCEEEEEe
Confidence 765 4555566788888773 4799999999995432 222334556788888887532 23788888
Q ss_pred cCCC--C---CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHh-------ccCCCHHHHHH
Q 005643 320 TNRP--D---ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFR-------TVGFSGADIRN 386 (686)
Q Consensus 320 TN~p--~---~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~-------t~G~sgadL~~ 386 (686)
++.. + .++|+|.+ ||+..|+||+++.+++.+|++.++.+....-+. .+..+... ..--++++++|
T Consensus 167 ~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn 244 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRN 244 (284)
T ss_pred CCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 7643 3 35899999 999999999999999999999988764322111 12333332 11235899999
Q ss_pred HHHHHHHHHHH
Q 005643 387 LVNESGIMSVR 397 (686)
Q Consensus 387 lv~eA~~~A~r 397 (686)
++..|......
T Consensus 245 ~ve~~~~~~~~ 255 (284)
T TIGR02880 245 AIDRARLRQAN 255 (284)
T ss_pred HHHHHHHHHHH
Confidence 99988766554
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=8.2e-19 Score=175.65 Aligned_cols=201 Identities=21% Similarity=0.263 Sum_probs=132.3
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~ 244 (686)
-.+.+|+|++||+++++.++-++...+.. .....++|||||||+|||+||+.||++++.+|...|+..+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~- 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA- 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC-
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH-
Confidence 45679999999999999988887765443 2345689999999999999999999999999999988654332
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC--Ccc---c-c-cccccEEEE
Q 005643 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT--GID---R-F-SLRQAVIFI 317 (686)
Q Consensus 245 ~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~--~~~---~-~-~~~~~ViVI 317 (686)
+. +..++...+ ...|||||||+.+.. .....|+..|+.+.-.- +.. + . -.-.++.+|
T Consensus 90 ~d----l~~il~~l~--~~~ILFIDEIHRlnk----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 90 GD----LAAILTNLK--EGDILFIDEIHRLNK----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HH----HHHHHHT----TT-EEEECTCCC--H----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred HH----HHHHHHhcC--CCcEEEEechhhccH----------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 22 233333333 357999999999942 34566777887654211 000 0 0 011358999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcccc-ccHHHHHHhccCCCHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVFRTVGFSGADIRNLVNESG 392 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~~t~G~sgadL~~lv~eA~ 392 (686)
+||++...|.+.|+. ||.....+..++.++..+|++.......+.-+ ....++|+++.| +++-..++++.+.
T Consensus 154 gATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred eeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 999999999999998 99988899999999999999976665544322 236789999888 7887777777654
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=5e-18 Score=180.74 Aligned_cols=220 Identities=18% Similarity=0.220 Sum_probs=156.2
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhH
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSG 247 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~ 247 (686)
.+|+|++|++++++.|..++...+.. ...+.+++|+||||||||++|+++|++++.++..++++..... .
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~-~-- 70 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP-G-- 70 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc-h--
Confidence 37999999999998888877543332 2356789999999999999999999999998877765543221 1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC----Cc--cc-ccccccEEEEEec
Q 005643 248 AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT----GI--DR-FSLRQAVIFICAT 320 (686)
Q Consensus 248 ~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~----~~--~~-~~~~~~ViVIaaT 320 (686)
.+...+... ..+.+|||||+|.+... ....|+..|+.....- +. .. .....++++|++|
T Consensus 71 --~l~~~l~~~--~~~~vl~iDEi~~l~~~----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 71 --DLAAILTNL--EEGDVLFIDEIHRLSPA----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred --hHHHHHHhc--ccCCEEEEehHhhhCHH----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 122222222 34679999999998531 1233444444322110 00 00 0112348899999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
|++..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..+++.+.| +++.+.++++.+...|...+
T Consensus 137 ~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~~ 213 (305)
T TIGR00635 137 TRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVRG 213 (305)
T ss_pred CCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHcC
Confidence 999999999998 998899999999999999999777543332 22346788888777 56788899998877776666
Q ss_pred CCcccHHHHHHHHHH
Q 005643 400 HSKIQQQDIVDVLDK 414 (686)
Q Consensus 400 ~~~It~~dl~~Al~~ 414 (686)
...|+.+++..+++.
T Consensus 214 ~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 214 QKIINRDIALKALEM 228 (305)
T ss_pred CCCcCHHHHHHHHHH
Confidence 677999999888876
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=6.1e-18 Score=182.31 Aligned_cols=223 Identities=19% Similarity=0.202 Sum_probs=161.4
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~ 244 (686)
..+.+|+|++|+++.++.+..++...+.+ ..++.++||+||||||||++|+++|++++..+..+++..+...
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~- 90 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP- 90 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh-
Confidence 34568999999999999888887654433 2457789999999999999999999999999888776644321
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc----CCcc--cc-cccccEEEE
Q 005643 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER----TGID--RF-SLRQAVIFI 317 (686)
Q Consensus 245 ~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~----~~~~--~~-~~~~~ViVI 317 (686)
..+..++... ..++||||||||.+... .. +.+...|+..... .+.. .. ....++++|
T Consensus 91 ----~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 91 ----GDLAAILTNL--EEGDVLFIDEIHRLSPV-------VE---EILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred ----HHHHHHHHhc--ccCCEEEEecHhhcchH-------HH---HHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 1233444333 34689999999998421 11 2233444332110 0000 00 011247899
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
++||++..++++|++ ||...+.++.|+.+++.+|++..+....+. ++..+..|+..+.| +++.+.++++.+...|.
T Consensus 155 ~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~ 231 (328)
T PRK00080 155 GATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQ 231 (328)
T ss_pred eecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHH
Confidence 999999999999988 999999999999999999999877654433 22236788888777 56889999998888887
Q ss_pred HhCCCcccHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~ 414 (686)
.++...|+.+++..+++.
T Consensus 232 ~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 232 VKGDGVITKEIADKALDM 249 (328)
T ss_pred HcCCCCCCHHHHHHHHHH
Confidence 777778999999999865
No 49
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.5e-17 Score=169.60 Aligned_cols=226 Identities=18% Similarity=0.177 Sum_probs=173.2
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~ 244 (686)
-.+.+|+|.+|++++|+.|+-++..-+.. ....-++|||||||.|||+||+-+|+|+|+.+-..++..+....
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 34678999999999999999988876655 34677999999999999999999999999999988887765432
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc-------ccccccEEEE
Q 005643 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR-------FSLRQAVIFI 317 (686)
Q Consensus 245 ~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~-------~~~~~~ViVI 317 (686)
. +-.++.... ...|+|||||+.+.+. +-.-|...|+.|.-.--++. .-.-.++.+|
T Consensus 93 -D----laaiLt~Le--~~DVLFIDEIHrl~~~----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 93 -D----LAAILTNLE--EGDVLFIDEIHRLSPA----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred -h----HHHHHhcCC--cCCeEEEehhhhcChh----------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 2 333333333 3479999999999532 22345556665532211100 0112468999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccc-cccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
+||.+...|...|+. ||.....+..++.++..+|++.......+.- +....++|+++.| +++-...|+++..-.|.
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQ 232 (332)
T ss_pred eeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHH
Confidence 999999999999998 9999999999999999999998765544432 2236789999888 78888899999999998
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (686)
-++...|+.+-..+|++....
T Consensus 233 V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 233 VKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred HhcCCcccHHHHHHHHHHhCc
Confidence 899999999888888886543
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-17 Score=184.69 Aligned_cols=208 Identities=19% Similarity=0.232 Sum_probs=163.5
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhC----CCeEEEeCccccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g----~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (686)
+..+.+|||+||+|+|||.|++++++++. +++..++|+.+... .....+.++.+|..+-+++|+||++|++|.|.
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 44567899999999999999999999875 45778999998876 44556678999999999999999999999998
Q ss_pred ccCC---CCChhHHHHHHHHHHHh-cCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHH
Q 005643 276 GRHA---RKDPRRRATFEALIAQL-DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRV 351 (686)
Q Consensus 276 ~~~~---~~~~e~~~~l~~LL~~l-d~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~ 351 (686)
+... +..+...+.++.+++.+ +.+... +..+.|||+.+....|++-|.+|++|+.++.++.|+..+|.
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~--------~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~ 579 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQVIKIYLKR--------NRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRK 579 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHHHHHHHcc--------CcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHH
Confidence 7322 22333444455555333 222221 23479999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHHH
Q 005643 352 QIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK----GHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 352 ~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~----~~~~It~~dl~~Al~~~~ 416 (686)
+||+..+.+.... ..-|++-++..|+||...|+..++.+|...|... +...+|.++|.+++..-+
T Consensus 580 ~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 580 EILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 9999887765522 1124555999999999999999999999888732 333789999999998754
No 51
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=1.4e-17 Score=189.98 Aligned_cols=225 Identities=19% Similarity=0.240 Sum_probs=150.2
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCe
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPF 232 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~f 232 (686)
+...+.+|++++|++...+.+... +.. +.+.++||+||||||||++|+++..++ +.+|
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~a---l~~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAA---LCG---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHH---HhC---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 456778999999999776666532 222 246789999999999999999997643 3689
Q ss_pred EEEeCccc--cch-h-----hh---HHHHHHHHHH----------HHHhcCCeEEEEccchhhhccCCCCChhHHHHHHH
Q 005643 233 VFASGAEF--TDS-E-----KS---GAARINEMFS----------IARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEA 291 (686)
Q Consensus 233 i~is~s~~--~~~-~-----~~---~~~~vr~lF~----------~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~ 291 (686)
+.++|... .+. . +. ....-...|. ........+|||||+|.+.. ..++.
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~----------~~q~~ 194 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP----------VQMNK 194 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH----------HHHHH
Confidence 99998642 111 0 00 0000000010 01122347999999999953 24567
Q ss_pred HHHHhcCCcccC------Ccc---------c--ccccccEEEE-EecCCCCCCccccccCCccceEEEeCCCCHHHHHHH
Q 005643 292 LIAQLDGDKERT------GID---------R--FSLRQAVIFI-CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (686)
Q Consensus 292 LL~~ld~~~~~~------~~~---------~--~~~~~~ViVI-aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~I 353 (686)
|+..|+...... +.+ . ...+.++.+| +|||.|+.+++++++ |+ ..+.+++++.+++.+|
T Consensus 195 LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~I 271 (531)
T TIGR02902 195 LLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEI 271 (531)
T ss_pred HHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHH
Confidence 777665421100 000 0 0112234444 566789999999998 88 4788999999999999
Q ss_pred HHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 354 FDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 354 l~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
++..+++..+. ++..++.|+..+. +++++.++++.|+..|..+++..|+.+|+.+++..
T Consensus 272 l~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 272 AKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 99888755433 2223566666543 89999999999999998888888999999988753
No 52
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4e-17 Score=185.42 Aligned_cols=216 Identities=39% Similarity=0.615 Sum_probs=190.7
Q ss_pred hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhhHHHHHHHHHHHHHhcCCeEEEE
Q 005643 190 MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFV 268 (686)
Q Consensus 190 l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfI 268 (686)
+..+..+...+..++++++++||||||||++++++|.+ +..++.+++.+.... .+....+.+.+|..++..+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34567788899999999999999999999999999999 776688888888777 6778889999999999999999999
Q ss_pred ccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCH
Q 005643 269 DEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDA 347 (686)
Q Consensus 269 DEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~ 347 (686)
||+|.+.+++.. ........+.+++..+++.. . .. +++++.||++..+|+++++||||++.+.+..|+.
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~--------~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-R--------GQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhccccc-C--------Cc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 999999887655 23345677899999999876 2 24 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC------CCcccHHHHHHHHHHHH
Q 005643 348 KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG------HSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~------~~~It~~dl~~Al~~~~ 416 (686)
..+.+|++.+........+.++..++..+.|++++++..++.++...+.++. ...++.+++.++++++.
T Consensus 153 ~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~ 227 (494)
T COG0464 153 AGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVL 227 (494)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcC
Confidence 9999999999988888888999999999999999999999999999888875 23578899999999864
No 53
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-17 Score=171.92 Aligned_cols=231 Identities=22% Similarity=0.358 Sum_probs=164.8
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhC-----CccCceEEEEcCCCCcHHHHHHHHHHHhCC---------CeEE
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERG-----VQFVRGVLLSGPPGTGKTLFARTLAKESGL---------PFVF 234 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g-----~~~p~gvLL~GPPGTGKT~LAralA~e~g~---------~fi~ 234 (686)
-|+.++-...+|+.|-..+ .....|.+.+ +...|-+|||||||||||+|+||+|..+.+ .++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya---~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYA---ASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred hHHHHhhcccHHHHHHHHH---HHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 4666666666777654433 3334444444 345788999999999999999999997743 5789
Q ss_pred EeCccccch-hhhHHHHHHHHHHHHHh---cCC--eEEEEccchhhhccC-----CCCChhHHHHHHHHHHHhcCCcccC
Q 005643 235 ASGAEFTDS-EKSGAARINEMFSIARR---NAP--AFVFVDEIDAIAGRH-----ARKDPRRRATFEALIAQLDGDKERT 303 (686)
Q Consensus 235 is~s~~~~~-~~~~~~~vr~lF~~Ak~---~~P--~ILfIDEiDal~~~~-----~~~~~e~~~~l~~LL~~ld~~~~~~ 303 (686)
+++..+.+. ++++.+.+..+|++... ... ..++|||+++++..| +......-+.+|.+|.+||......
T Consensus 217 inshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~ 296 (423)
T KOG0744|consen 217 INSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP 296 (423)
T ss_pred EehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC
Confidence 999988887 56777778888887654 222 357799999998644 1223345678999999999977654
Q ss_pred CcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC-----C--------ccccc---
Q 005643 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-----Q--------LAEDV--- 367 (686)
Q Consensus 304 ~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-----~--------l~~dv--- 367 (686)
+|++++|+|-.+.||.|+.. |-|-+.++++|+...|.+|++..+... - ....+
T Consensus 297 ---------NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~ 365 (423)
T KOG0744|consen 297 ---------NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQ 365 (423)
T ss_pred ---------CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhh
Confidence 49999999999999999999 999999999999999999998765311 1 10111
Q ss_pred --cHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 368 --NFEELVFR-TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 368 --dl~~La~~-t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
....++.. +.|.||+.|+.|=--|...-. ....|+..++..|+-..
T Consensus 366 ~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~--~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 366 KALRNILIELSTVGLSGRTLRKLPLLAHAEYF--RTFTVDLSNFLLALLEA 414 (423)
T ss_pred HhHHHHHHHHhhcCCccchHhhhhHHHHHhcc--CCCccChHHHHHHHHHH
Confidence 12223333 589999999988654442222 22468888888776544
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.73 E-value=4.4e-17 Score=173.22 Aligned_cols=202 Identities=24% Similarity=0.345 Sum_probs=138.7
Q ss_pred CCcccccceecCcccHH---HHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 165 DTKSMYKEVVLGGDVWD---LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~---~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
-.+.+|+|++||+.... .|...++ .....+++||||||||||++|+.||+..+.+|..+|.-.
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 34678999999986432 3333322 234558999999999999999999999999999887543
Q ss_pred chhhhHHHHHHHHHHHHHhcC----CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 242 DSEKSGAARINEMFSIARRNA----PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 242 ~~~~~~~~~vr~lF~~Ak~~~----P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
.+.+.++.+|+.|++.. ..|||||||+.+-. .....||..++.. .|++|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----------~QQD~lLp~vE~G-------------~iilI 136 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK----------AQQDALLPHVENG-------------TIILI 136 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh----------hhhhhhhhhhcCC-------------eEEEE
Confidence 34567899999996533 48999999999942 2345677777552 27888
Q ss_pred Eec--CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhc--CCCcc------ccccHHHHHHhccCCCHHHHHHH
Q 005643 318 CAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA--GKQLA------EDVNFEELVFRTVGFSGADIRNL 387 (686)
Q Consensus 318 aaT--N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~--~~~l~------~dvdl~~La~~t~G~sgadL~~l 387 (686)
+|| |..-.|.+||++ |. +++.+.+.+.++..++++.-+. ...+. ++.-+..|+..+.| |.+.+
T Consensus 137 GATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~a 209 (436)
T COG2256 137 GATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRA 209 (436)
T ss_pred eccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHH
Confidence 766 555689999999 87 6789999999999999987332 22222 22235667766666 55555
Q ss_pred HHHHHHHHH--HhCCCcccHHHHHHHHHHH
Q 005643 388 VNESGIMSV--RKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 388 v~eA~~~A~--r~~~~~It~~dl~~Al~~~ 415 (686)
+|..-+.+. +.+. .++.+++.+.+.+.
T Consensus 210 LN~LE~~~~~~~~~~-~~~~~~l~~~l~~~ 238 (436)
T COG2256 210 LNLLELAALSAEPDE-VLILELLEEILQRR 238 (436)
T ss_pred HHHHHHHHHhcCCCc-ccCHHHHHHHHhhh
Confidence 553322222 2222 34477777766654
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=1.2e-16 Score=189.17 Aligned_cols=222 Identities=20% Similarity=0.248 Sum_probs=157.0
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEE
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~i 235 (686)
.+-.+++++|.++ ++..++..|... ...++||+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~---ei~~~~~~L~~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGRED---ELERTIQVLCRR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHH---HHHHHHHHHhcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3457899999884 444455554433 35689999999999999999999987 6778899
Q ss_pred eCccccc--h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 236 SGAEFTD--S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 236 s~s~~~~--~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
+++.+.. . .+....+++.+|+.++...|+||||||+|.+.+.+...+.. ....+.|...|.. .
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~-~~~~~~L~~~l~~-------------g 310 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS-MDASNLLKPALSS-------------G 310 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc-HHHHHHHHHHHhC-------------C
Confidence 9888764 2 46677899999999988889999999999997643221111 1123444444432 1
Q ss_pred cEEEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC----Cc-cccccHHHHHHhccCCC--
Q 005643 313 AVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK----QL-AEDVNFEELVFRTVGFS-- 380 (686)
Q Consensus 313 ~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~----~l-~~dvdl~~La~~t~G~s-- 380 (686)
.+.+|++||..+ .+|+|+.| ||. .|.++.|+.+++.+||+...... .+ -.+..+..++..+..|-
T Consensus 311 ~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 311 KLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred CeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 388999998633 57999999 996 79999999999999999654321 11 12334666776665553
Q ss_pred ---HHHHHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHHH
Q 005643 381 ---GADIRNLVNESGIMSVRK----GHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 381 ---gadL~~lv~eA~~~A~r~----~~~~It~~dl~~Al~~~~ 416 (686)
+...-.++++|+.....+ .+..|+.+|+..++.+..
T Consensus 388 r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 388 RFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred ccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 334456677776543322 134599999999998864
No 56
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=1.5e-16 Score=189.39 Aligned_cols=171 Identities=24% Similarity=0.253 Sum_probs=122.6
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch--------
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-------- 243 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-------- 243 (686)
++.|++++|+.+.+.+...+.. +...+..+||+||||||||++|+++|+.++.+|+.++++.+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 4778888888887766543211 11223479999999999999999999999999999987654321
Q ss_pred --hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc----ccccccEEEE
Q 005643 244 --EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR----FSLRQAVIFI 317 (686)
Q Consensus 244 --~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~----~~~~~~ViVI 317 (686)
.+.....+...|..+....| ||||||||.+.+.. .++ ..+.|+..||......-.+. .....++++|
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-~~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-RGD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-CCC-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 12223456677888776665 88999999997432 111 24667777764221111111 1122468999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHh
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l 358 (686)
+|||.++.++++|++ ||+ .|+|+.|+.+++.+|++.++
T Consensus 468 ~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 999999999999999 995 78999999999999998776
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=6.1e-16 Score=181.73 Aligned_cols=220 Identities=18% Similarity=0.216 Sum_probs=148.5
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CC-------CeEEEeC
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GL-------PFVFASG 237 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~-------~fi~is~ 237 (686)
-.++.++|.+ ++++.++..|... .+.++||+||||||||++|+++|... ++ .++.++.
T Consensus 183 g~~~~liGR~---~ei~~~i~iL~r~---------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGRE---KELERAIQVLCRR---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCC---HHHHHHHHHHhcc---------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 4577888887 4555555544443 34678999999999999999999864 33 4444444
Q ss_pred ccccc--h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccE
Q 005643 238 AEFTD--S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV 314 (686)
Q Consensus 238 s~~~~--~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~V 314 (686)
..+.. . .+....+++.+|..++...++||||||||.+.+.+..... .....|.|...+.. ..+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g-~~d~~nlLkp~L~~-------------g~i 316 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-QVDAANLIKPLLSS-------------GKI 316 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc-HHHHHHHHHHHHhC-------------CCe
Confidence 44432 1 3456778999999998888999999999999865432111 11222223222221 238
Q ss_pred EEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccH-----HHHHHh-----ccCC
Q 005643 315 IFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF-----EELVFR-----TVGF 379 (686)
Q Consensus 315 iVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl-----~~La~~-----t~G~ 379 (686)
.+|+|||.++ ..|++|.| ||+ .|.++.|+.+++..||+.+........++++ ...+.. +..+
T Consensus 317 ~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~ 393 (758)
T PRK11034 317 RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_pred EEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCcc
Confidence 9999999865 57999999 995 7999999999999999976554433333332 222222 2344
Q ss_pred CHHHHHHHHHHHHHHHH----HhCCCcccHHHHHHHHHHHH
Q 005643 380 SGADIRNLVNESGIMSV----RKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~----r~~~~~It~~dl~~Al~~~~ 416 (686)
-|...-.++.+|+.... ...+..|+.+|+.+.+.+..
T Consensus 394 lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 394 LPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred ChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 56688889999886442 12344688899988888754
No 58
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.6e-15 Score=170.10 Aligned_cols=204 Identities=19% Similarity=0.259 Sum_probs=142.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC-------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~------------- 230 (686)
...+.+|+||+|++.+++.|...+. +. +.|.++||+||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~---~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK---KN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 3467899999999988777665433 33 35678999999999999999999998765
Q ss_pred -----------CeEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 231 -----------~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
.++.++++. ..+...++.+.+.+.. ....||||||+|.+.. ..++.|+..
T Consensus 76 ~c~~i~~g~~~dv~el~aa~-----~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----------~a~~~LLk~ 140 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS-----NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK----------EAFNALLKT 140 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc-----cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH----------HHHHHHHHH
Confidence 233443321 1223445665555542 2346999999999942 346778888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC--CccccccHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK--QLAEDVNFEELV 373 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~La 373 (686)
++.... .+++|++|+.+..+++++++ |+ ..+.+.+|+.++...+++..+... .+. +..+..|+
T Consensus 141 LE~p~~-----------~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~-~eal~~Ia 205 (472)
T PRK14962 141 LEEPPS-----------HVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEID-REALSFIA 205 (472)
T ss_pred HHhCCC-----------cEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 876432 26777777778899999998 88 589999999999999998776543 333 33477888
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005643 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 374 ~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (686)
..+.| +.+++-+.+..+...+ + ..||.+++.+++.
T Consensus 206 ~~s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 206 KRASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred HHhCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 87655 5556666665444322 2 2499999887764
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=99.66 E-value=2.2e-15 Score=170.58 Aligned_cols=208 Identities=21% Similarity=0.300 Sum_probs=146.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
+..+.+|+||+|++++++.|..++....+ ..+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~ 78 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA 78 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH
Confidence 45678899999999988888887754332 1347899999999999999999999999999999998875432
Q ss_pred hhhHHHHHHHHHHHHHh------cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 244 EKSGAARINEMFSIARR------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 244 ~~~~~~~vr~lF~~Ak~------~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .++.+...+.. ..+.||+|||+|.+.++. ....++.|+..++... ..+|
T Consensus 79 ~-----~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~------d~~~~~aL~~~l~~~~-------------~~iI 134 (482)
T PRK04195 79 D-----VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE------DRGGARAILELIKKAK-------------QPII 134 (482)
T ss_pred H-----HHHHHHHHhhccCcccCCCCeEEEEecCccccccc------chhHHHHHHHHHHcCC-------------CCEE
Confidence 1 12222222211 246899999999985421 1223456666665311 2456
Q ss_pred EecCCCCCCcc-ccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDL-EFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 318 aaTN~p~~LD~-aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A 395 (686)
++||.+..+++ .+++ |+ ..|.|+.|+..+...+++..+....+. ++..+..|+..+.| |++.+++.....+
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a 207 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIA 207 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh
Confidence 67888888877 5554 44 689999999999999999877554432 23347788877544 8888888766533
Q ss_pred HHhCCCcccHHHHHHHH
Q 005643 396 VRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 396 ~r~~~~~It~~dl~~Al 412 (686)
.+...|+.+++....
T Consensus 208 --~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 --EGYGKLTLEDVKTLG 222 (482)
T ss_pred --cCCCCCcHHHHHHhh
Confidence 455678888886554
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.4e-15 Score=172.56 Aligned_cols=207 Identities=17% Similarity=0.250 Sum_probs=145.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
+..+.+|+||+|++.+++.|...+.. . +.+..+||+||+|||||++|+.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~---g--------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ---Q--------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh---C--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 45678999999999888877766542 2 456789999999999999999999988761
Q ss_pred eEEE-eC--------ccccchh---hhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 232 FVFA-SG--------AEFTDSE---KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 232 fi~i-s~--------s~~~~~~---~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
+-.+ +| .++.+.. ..+...++++.+.+.. ....|+||||+|.|. ....|.||+.
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls----------~~AaNALLKT 147 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT----------NHAFNAMLKT 147 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC----------HHHHHHHHHh
Confidence 1000 00 1122210 1234456666665442 335799999999994 2367899999
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcccc-ccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~ 374 (686)
|+.... +++||.+||.++.|.+.|++ |+ .++.|..++.++..+.++..+....+..+ ..+..|++
T Consensus 148 LEEPP~-----------~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 148 LEEPPE-----------HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred hccCCC-----------CceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 887443 37889999999999999999 98 78999999999999888877655444322 23567777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~ 410 (686)
.+.| +.++..+++..+... +...|+.+++.+
T Consensus 214 ~A~G-s~RdALsLLdQaia~----~~~~It~~~V~~ 244 (700)
T PRK12323 214 AAQG-SMRDALSLTDQAIAY----SAGNVSEEAVRG 244 (700)
T ss_pred HcCC-CHHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 7666 888888888776542 223466655543
No 61
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.8e-15 Score=166.31 Aligned_cols=209 Identities=16% Similarity=0.222 Sum_probs=146.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCe-------EE--
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-------VF-- 234 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~f-------i~-- 234 (686)
+..+.+|+||+|++.+...|...+. +. +.+..+||+||||||||++|+.+|+.++..- ..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~---~~--------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK---SG--------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 4567899999999988777666543 22 3566799999999999999999999887531 00
Q ss_pred -------EeCccccch---hhhHHHHHHHHHHHHH----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005643 235 -------ASGAEFTDS---EKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (686)
Q Consensus 235 -------is~s~~~~~---~~~~~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~ 300 (686)
-...++.+. ...+...++.+.+.+. .....|+||||+|.+. ...+|.||..|+...
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls----------~~A~NALLKtLEEPp 149 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT----------DQSFNALLKTLEEPP 149 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC----------HHHHHHHHHHhhcCC
Confidence 000112111 1122344566555443 2345799999999994 236789999887633
Q ss_pred ccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCC
Q 005643 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (686)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (686)
..+++|.+|+.++.|.+++++ |+ ..+.|..++.++..+.++..+....+. ++..+..|++.+.|
T Consensus 150 -----------~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G- 214 (484)
T PRK14956 150 -----------AHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG- 214 (484)
T ss_pred -----------CceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 247889999999999999999 88 578999999988888888777654432 33347788887776
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+.++.-+++..+...+ ...|+.+++.+.+
T Consensus 215 d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 215 SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 7888888887765432 2358888775544
No 62
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.66 E-value=8e-15 Score=159.91 Aligned_cols=221 Identities=17% Similarity=0.209 Sum_probs=144.1
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC---------CCeEEEeCcc
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---------LPFVFASGAE 239 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g---------~~fi~is~s~ 239 (686)
..++++|.++..+.| ..++..... ...+.+++|+||||||||++++++++++. +++++++|..
T Consensus 13 ~p~~l~gRe~e~~~l---~~~l~~~~~-----~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 13 VPDRIVHRDEQIEEL---AKALRPILR-----GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCcHHHHHHH---HHHHHHHHc-----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 345788887544444 444432211 13456899999999999999999987642 5788999876
Q ss_pred ccchhhh---------------------HHHHHHHHHHHHH-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005643 240 FTDSEKS---------------------GAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (686)
Q Consensus 240 ~~~~~~~---------------------~~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld 297 (686)
....... ....+..++.... ...+.||+|||+|.+.+. . ...+..|+...+
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----~---~~~L~~l~~~~~ 157 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----D---DDLLYQLSRARS 157 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----C---cHHHHhHhcccc
Confidence 5432100 1122344455443 345789999999999621 1 123444443311
Q ss_pred CCcccCCcccccccccEEEEEecCCCC---CCccccccCCccc-eEEEeCCCCHHHHHHHHHHHhcC----CCccccc-c
Q 005643 298 GDKERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAG----KQLAEDV-N 368 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRFd-~~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dv-d 368 (686)
.... ...++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++.. ..+.+++ +
T Consensus 158 ~~~~--------~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~ 227 (365)
T TIGR02928 158 NGDL--------DNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIP 227 (365)
T ss_pred ccCC--------CCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHH
Confidence 1110 113488999999886 57888877 774 67999999999999999987752 1122221 1
Q ss_pred -HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 369 -FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 369 -l~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
+..++..+.| ..+.+.++|+.|...|..++...|+.+|+..|++..
T Consensus 228 ~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 228 LCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 2234444455 466677789999999988888899999999998875
No 63
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.65 E-value=4.5e-15 Score=166.75 Aligned_cols=221 Identities=18% Similarity=0.265 Sum_probs=149.9
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCcc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~ 239 (686)
.++.+|++.+..+..+.....+..+..+|. ....+++||||||||||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 466799997655555555555555555541 234579999999999999999999987 56788999988
Q ss_pred ccchhhhHH--HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 240 FTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 240 ~~~~~~~~~--~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
|........ .....+.+..+ .+.+|+|||+|.+.++. .....+..+++.+.... ..+||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-----~~~~~l~~~~n~l~~~~------------~~iii 249 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE-----RTQEEFFHTFNALHEAG------------KQIVL 249 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCH-----HHHHHHHHHHHHHHHCC------------CcEEE
Confidence 865432211 11222222222 46799999999986431 11222333333332211 13566
Q ss_pred EecCCCCC---CccccccCCccc--eEEEeCCCCHHHHHHHHHHHhcCCC--ccccccHHHHHHhccCCCHHHHHHHHHH
Q 005643 318 CATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVFRTVGFSGADIRNLVNE 390 (686)
Q Consensus 318 aaTN~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~~t~G~sgadL~~lv~e 390 (686)
+++..|.. +++.+.+ ||. ..+.+.+|+.++|.+|++..+.... +.++ .++.||....| +.++|..+++.
T Consensus 250 ts~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e-~l~~ia~~~~~-~~R~l~~~l~~ 325 (450)
T PRK00149 250 TSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDE-VLEFIAKNITS-NVRELEGALNR 325 (450)
T ss_pred ECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHcCcCC-CHHHHHHHHHH
Confidence 66555554 6788888 996 4899999999999999998876543 3333 37778877655 88999999998
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 391 SGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
....+...+ ..||.+.+.+++...+
T Consensus 326 l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 326 LIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 887776655 4599999999988753
No 64
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3.6e-15 Score=171.13 Aligned_cols=207 Identities=17% Similarity=0.233 Sum_probs=146.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCe--EEEeCc---
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF--VFASGA--- 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~f--i~is~s--- 238 (686)
+..+.+|+||+|++.+++.|+..+. . .+.+..+||+||+|||||++|+++|+.+++.- -...|.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~---~--------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD---G--------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh---c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 4567899999999988887766543 2 24567899999999999999999999886521 000111
Q ss_pred -----------cccch---hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005643 239 -----------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (686)
Q Consensus 239 -----------~~~~~---~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~ 300 (686)
++.+. ...+...++.+.+.+.. ....|+||||+|.|.. ...|.||..|+...
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~----------~A~NALLKtLEEPP 147 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN----------HAFNAMLKTLEEPP 147 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH----------HHHHHHHHHHHhcC
Confidence 11111 11233456677666542 2357999999999942 35788999887754
Q ss_pred ccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCC
Q 005643 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (686)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (686)
. .++||.+||.++.|.+.|++ |+ .++.|..++.++..+.|+..+....+. ++..+..|++...|
T Consensus 148 ~-----------~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G- 212 (830)
T PRK07003 148 P-----------HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG- 212 (830)
T ss_pred C-----------CeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 3 37899999999999999999 98 789999999999999998877654443 23346778888776
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Q 005643 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~ 410 (686)
+.++..+++..+..+. ...|+.+++..
T Consensus 213 smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 213 SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 6778878877766432 23466665544
No 65
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.65 E-value=4.2e-15 Score=164.82 Aligned_cols=221 Identities=19% Similarity=0.270 Sum_probs=146.0
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCcc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~ 239 (686)
.+..+|++.+..++-......+..+..+| .....+++||||||||||+|++++++++ +..++++++.+
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 35679999554444444444444454444 1234679999999999999999999876 67899999988
Q ss_pred ccchhhhHH--HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 240 FTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 240 ~~~~~~~~~--~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
|........ .....+.+..+ .+.+|+|||+|.+.++. .....+..+++.+.... ..+||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-----~~~~~l~~~~n~~~~~~------------~~iii 237 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE-----RTQEEFFHTFNALHENG------------KQIVL 237 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH-----HHHHHHHHHHHHHHHCC------------CCEEE
Confidence 765422111 11222222222 35799999999986431 11222333333332111 13556
Q ss_pred EecCCCCC---CccccccCCccce--EEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHH
Q 005643 318 CATNRPDE---LDLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (686)
Q Consensus 318 aaTN~p~~---LD~aLlrpgRFd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA 391 (686)
+++..|.. +++.+.+ ||.. .+.+++|+.++|..|++..+....+. ++..+..||.+..+ +.++|..+++..
T Consensus 238 ts~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l 314 (405)
T TIGR00362 238 TSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRL 314 (405)
T ss_pred ecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 55555654 5678887 9964 79999999999999999887654443 23346778877655 889999999988
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHH
Q 005643 392 GIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
...|...+ ..||.+.+.+++...
T Consensus 315 ~~~a~~~~-~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 315 LAYASLTG-KPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHh
Confidence 87776555 569999888888764
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.65 E-value=5.6e-15 Score=164.17 Aligned_cols=200 Identities=24% Similarity=0.324 Sum_probs=141.8
Q ss_pred CCcccccceecCcccHHH---HHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 165 DTKSMYKEVVLGGDVWDL---LDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~---L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
..+.+|+|++|++.+... |..++ ... .+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i---~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMI---EAG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHH---HcC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 456789999999977554 54444 222 24489999999999999999999999999999987643
Q ss_pred chhhhHHHHHHHHHHHHH----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 242 DSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 242 ~~~~~~~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
+...++.+++.+. .....||||||+|.+.. ...+.|+..++.. .+++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~----------~~q~~LL~~le~~-------------~iilI 124 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK----------AQQDALLPHVEDG-------------TITLI 124 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH----------HHHHHHHHHhhcC-------------cEEEE
Confidence 2234555565553 23568999999999842 2345666666541 25666
Q ss_pred Eec--CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC-----CccccccHHHHHHhccCCCHHHHHHHHHH
Q 005643 318 CAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-----QLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (686)
Q Consensus 318 aaT--N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-----~l~~dvdl~~La~~t~G~sgadL~~lv~e 390 (686)
++| |....+++++++ |+ ..+.+++|+.++...+++..+... .+. +..+..+++.+.| +.+.+.+++..
T Consensus 125 ~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~ 199 (413)
T PRK13342 125 GATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLEL 199 (413)
T ss_pred EeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 655 334578999998 88 789999999999999998766431 222 2235677777644 66677777776
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 391 SGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
+... ...|+.+++.+++...
T Consensus 200 ~~~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 200 AALG-----VDSITLELLEEALQKR 219 (413)
T ss_pred HHHc-----cCCCCHHHHHHHHhhh
Confidence 5543 4569999998888764
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.4e-15 Score=168.13 Aligned_cols=204 Identities=20% Similarity=0.281 Sum_probs=146.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
+..+.+|+||+|++.+++.|...+. + .+.+..+||+||||||||++|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~---~--------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE---R--------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 4567899999999988777766554 2 2457889999999999999999999998752
Q ss_pred ------------eEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 232 ------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
++.+++++ ..+...+|.+...+.. ....|+||||+|.+.. ...|.|+..
T Consensus 77 sC~~I~~g~hpDviEIDAAs-----~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~----------~A~NALLKt 141 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAAS-----RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST----------HSFNALLKT 141 (702)
T ss_pred HHHHHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH----------HHHHHHHHH
Confidence 22232221 1123446666554432 3457999999999842 356888888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+.+|.+|+.+..+.+.+++ |+ ..+.|.+++.++..+.++..+....+. .+..+..|+.
T Consensus 142 LEEPP~-----------~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~ 207 (702)
T PRK14960 142 LEEPPE-----------HVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE 207 (702)
T ss_pred HhcCCC-----------CcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 876432 36788888888889888887 88 689999999999999888777654433 2334677887
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
.+.| +.+++.+++..+... +...|+.+++...+
T Consensus 208 ~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 208 SAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 7665 788888887766532 34568888876643
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=7e-15 Score=160.70 Aligned_cols=210 Identities=17% Similarity=0.282 Sum_probs=145.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE--EeC----
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF--ASG---- 237 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~--is~---- 237 (686)
+..+.+|+||+|++.+++.|+..+.. . +.|..+||+||||||||++|+++|+++++.... -.|
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~---~--------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL---G--------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc---C--------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 45678999999999888777655432 1 356789999999999999999999988642110 001
Q ss_pred ----------ccccch---hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005643 238 ----------AEFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (686)
Q Consensus 238 ----------s~~~~~---~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~ 300 (686)
.++.+. .......++.+.+.+.. ....|++|||+|.+. ....+.||..++...
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~----------~~a~naLLk~lEe~~ 147 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS----------RHSFNALLKTLEEPP 147 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC----------HHHHHHHHHHHhcCC
Confidence 011111 01223446666655432 224699999999984 235678888887643
Q ss_pred ccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCC
Q 005643 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (686)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (686)
. .+.+|.+|+.++.+.+.+++ |+ ..+++++|+.++..++++..+...... ++..+..++..+.|
T Consensus 148 ~-----------~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G- 212 (363)
T PRK14961 148 Q-----------HIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG- 212 (363)
T ss_pred C-----------CeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 2 35677778888889999987 88 689999999999999998776654432 23346777877665
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005643 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (686)
+.+++.+++..+... +...|+.+++.+++.
T Consensus 213 ~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 213 SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 788888888766533 456799988877653
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=99.63 E-value=5.4e-15 Score=158.84 Aligned_cols=201 Identities=17% Similarity=0.227 Sum_probs=133.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC-----CeEEEeCc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-----PFVFASGA 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-----~fi~is~s 238 (686)
+..+.+|+|++|++++.+.|+.++. +. +. .++|||||||||||++|+++|+++.. .++.++.+
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~---~~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIAR---DG--------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHh---cC--------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 5677899999999988877776544 22 12 26999999999999999999999732 35555555
Q ss_pred cccchhhhHHHHHHHHHHH---HH----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 005643 239 EFTDSEKSGAARINEMFSI---AR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (686)
Q Consensus 239 ~~~~~~~~~~~~vr~lF~~---Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (686)
+... ...++...+. .. ...+.|++|||+|.+.. ...+.|+..|+.....
T Consensus 74 d~~~-----~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----------~aq~aL~~~lE~~~~~--------- 129 (319)
T PLN03025 74 DDRG-----IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS----------GAQQALRRTMEIYSNT--------- 129 (319)
T ss_pred cccc-----HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH----------HHHHHHHHHHhcccCC---------
Confidence 4321 1123333221 11 12357999999999942 2346666666543322
Q ss_pred ccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHH
Q 005643 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNE 390 (686)
Q Consensus 312 ~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~e 390 (686)
+.+|.+||.+..+.++|++ |+ ..+.|++|+.++....++..++...+. ++..+..++....| |++.+++.
T Consensus 130 --t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~ 200 (319)
T PLN03025 130 --TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNN 200 (319)
T ss_pred --ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 3577788888899899998 87 579999999999999998776544332 23346777776554 55555554
Q ss_pred HHHHHHHhCCCcccHHHHHHH
Q 005643 391 SGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~A 411 (686)
....+ .+...|+.+++.+.
T Consensus 201 Lq~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 201 LQATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHHHH--hcCCCCCHHHHHHH
Confidence 43222 23456888777543
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.1e-14 Score=164.07 Aligned_cols=212 Identities=19% Similarity=0.310 Sum_probs=151.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE---------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF--------- 234 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~--------- 234 (686)
+..+.+|+|++|++.+...|+..+.. .+.+.++||+||||||||++|+++|+.+++.--.
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 56778999999999877766654321 2467899999999999999999999998652110
Q ss_pred ---EeCc--------cccch---hhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005643 235 ---ASGA--------EFTDS---EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 235 ---is~s--------~~~~~---~~~~~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~l 296 (686)
-+|. ++.+. ...+...++.+++.+... ...|++|||+|.+. ...++.|+..|
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls----------~~a~naLLk~L 152 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS----------KGAFNALLKTL 152 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC----------HHHHHHHHHHH
Confidence 0011 11111 112345677777777532 34699999999884 23578888888
Q ss_pred cCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHh
Q 005643 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFR 375 (686)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~ 375 (686)
+.... .+++|.+|+.++.+++.+++ |+ ..+++..++.++...+++..++..... ++..+..|+..
T Consensus 153 Eepp~-----------~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 153 EEPPP-----------HIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred hhcCC-----------CEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 75332 36778788888999999998 88 578999999999999999887655443 22346778887
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 376 TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 376 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+.| +.+++.+++..+...+... ...||.+++.+.+
T Consensus 219 s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 766 8899999998887665322 2358888887654
No 71
>PRK06893 DNA replication initiation factor; Validated
Probab=99.62 E-value=2.5e-14 Score=146.62 Aligned_cols=211 Identities=11% Similarity=0.136 Sum_probs=131.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
-.+..+|++.++++... .+..+.... .. .....++||||||||||+|++++|+++ +....+++....
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~~------~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKNF------ID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHHh------hc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 45678999999877432 222221111 11 122368999999999999999999885 445566655422
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 241 ~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
... ...+++..+ ...+|+|||++.+.++ ......+..+++.+.... ..++|++++
T Consensus 79 ~~~-------~~~~~~~~~--~~dlLilDDi~~~~~~-----~~~~~~l~~l~n~~~~~~-----------~~illits~ 133 (229)
T PRK06893 79 QYF-------SPAVLENLE--QQDLVCLDDLQAVIGN-----EEWELAIFDLFNRIKEQG-----------KTLLLISAD 133 (229)
T ss_pred hhh-------hHHHHhhcc--cCCEEEEeChhhhcCC-----hHHHHHHHHHHHHHHHcC-----------CcEEEEeCC
Confidence 111 112233332 3579999999998532 223334555555443211 114556666
Q ss_pred CCCCCCc---cccccCCccceEEEeCCCCHHHHHHHHHHHhcCCC--ccccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005643 321 NRPDELD---LEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 321 N~p~~LD---~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A 395 (686)
..|..++ +.|.+..++...+.++.|+.++|.+|++.++.... +.++ -+..|+++..| +.+.+.++++.....+
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~-v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 211 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDE-VANFLLKRLDR-DMHTLFDALDLLDKAS 211 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 6676654 78888333356889999999999999997765433 3333 36778877665 7888888888665444
Q ss_pred HHhCCCcccHHHHHHHH
Q 005643 396 VRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 396 ~r~~~~~It~~dl~~Al 412 (686)
..++ ..||...+++++
T Consensus 212 ~~~~-~~it~~~v~~~L 227 (229)
T PRK06893 212 LQAQ-RKLTIPFVKEIL 227 (229)
T ss_pred HhcC-CCCCHHHHHHHh
Confidence 4334 468988877665
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=9.8e-15 Score=165.41 Aligned_cols=204 Identities=21% Similarity=0.249 Sum_probs=145.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
+..+.+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 45678999999999888877765532 2456789999999999999999999988653
Q ss_pred ------------eEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 232 ------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
++.+++++ ..+...+|.+.+.+.. ....|+||||+|.+.. ...|.||..
T Consensus 78 ~C~~i~~g~~~d~~eidaas-----~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~----------~a~naLLk~ 142 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS-----RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG----------HSFNALLKT 142 (509)
T ss_pred HHHHHhcCCCceEEEEcccc-----cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH----------HHHHHHHHH
Confidence 23333221 1233446666655432 2346999999999942 357889998
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+++|.+|+.+..+.+.+++ |+ ..++|..++.++....++..+...... .+..+..++.
T Consensus 143 LEepp~-----------~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 143 LEEPPS-----------HVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HhccCC-----------CeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 887543 36778788888989888988 87 578899888888887777666544332 2334677887
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
.+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 209 ~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 209 AANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 7655 888888888776533 34568888876654
No 73
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.61 E-value=1.5e-14 Score=155.72 Aligned_cols=208 Identities=19% Similarity=0.292 Sum_probs=135.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEEeCc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g-----~~fi~is~s 238 (686)
+..+.+|++++|++++++.|..++. ++ ...++||+||||||||++|+++++++. .++++++++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~---~~---------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVD---SP---------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHh---CC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 4567889999999987777766543 22 123699999999999999999999873 457888887
Q ss_pred cccchh--------------hh-------HHHHHHHHHHHHHh-----cCCeEEEEccchhhhccCCCCChhHHHHHHHH
Q 005643 239 EFTDSE--------------KS-------GAARINEMFSIARR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292 (686)
Q Consensus 239 ~~~~~~--------------~~-------~~~~vr~lF~~Ak~-----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~L 292 (686)
++.... +. ....++.+...... ..+.+|+|||+|.+.. ...+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~----------~~~~~L 145 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE----------DAQQAL 145 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH----------HHHHHH
Confidence 754210 00 11223333333322 2246999999998842 123445
Q ss_pred HHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHH
Q 005643 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEE 371 (686)
Q Consensus 293 L~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~ 371 (686)
...++..... ..+|.+|+.+..+.+.+.+ |+ ..+.+.+|+.++...+++..+....+. ++..+..
T Consensus 146 ~~~le~~~~~-----------~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~ 211 (337)
T PRK12402 146 RRIMEQYSRT-----------CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLEL 211 (337)
T ss_pred HHHHHhccCC-----------CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 5555443221 3455566667777778877 76 578999999999999998877654433 3335778
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005643 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 372 La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (686)
|+..+.| +++.+++.....+. +...||.+++.+++.
T Consensus 212 l~~~~~g----dlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 212 IAYYAGG----DLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHcCC----CHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 8877643 45555555444442 223699999877654
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.61 E-value=2.1e-14 Score=171.73 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=149.1
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEE
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~i 235 (686)
.+-++++++|.++ +++.++..+... ...+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~---ei~~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDD---EIRQMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHH---HHHHHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4568999999985 466666665444 23478999999999999999999876 2457778
Q ss_pred eCccccc--h-hhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 005643 236 SGAEFTD--S-EKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (686)
Q Consensus 236 s~s~~~~--~-~~~~~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (686)
+.+.+.. . .+....+++.+|+.++. ..++||||||+|.+.+.+...+. ....|.|+..+..
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~--~d~~n~Lkp~l~~------------- 314 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ--GDAANLLKPALAR------------- 314 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc--ccHHHHhhHHhhC-------------
Confidence 7777653 2 46677899999999875 46899999999999764322111 1122334444432
Q ss_pred ccEEEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCC----c-cccccHHHHHHhccCCC-
Q 005643 312 QAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ----L-AEDVNFEELVFRTVGFS- 380 (686)
Q Consensus 312 ~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~----l-~~dvdl~~La~~t~G~s- 380 (686)
..+.+|+||+..+ .+|+||.| || ..|.|+.|+.+++..||+.+.+... + -.+..+..++..+.+|-
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 2378999998643 48999999 99 5899999999999999875543221 1 12344677777777663
Q ss_pred ----HHHHHHHHHHHHHHHHHh-CCCcccHHHHHHHH
Q 005643 381 ----GADIRNLVNESGIMSVRK-GHSKIQQQDIVDVL 412 (686)
Q Consensus 381 ----gadL~~lv~eA~~~A~r~-~~~~It~~dl~~Al 412 (686)
+...-.++.+|+.....+ ....+..+++.+.+
T Consensus 392 ~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 392 GRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 445557788876654432 33444555555444
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.3e-14 Score=164.96 Aligned_cols=204 Identities=23% Similarity=0.302 Sum_probs=146.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
+..+.+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 34568999999999888777655442 2356778999999999999999999988763
Q ss_pred ------------eEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 232 ------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
++.+++.+ ..+...+|.+.+.+.. ....|+||||+|.+. ....|.||..
T Consensus 78 ~C~~i~~g~~~D~ieidaas-----~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls----------~~a~NALLKt 142 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS-----RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS----------RHSFNALLKT 142 (647)
T ss_pred HHHHHHcCCCCCceeecccc-----cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC----------HHHHHHHHHH
Confidence 12222211 1123345655554432 345799999999994 2468999999
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+++|.+|+.+..|.+.+++ |+ ..++|..++.++....|+..+....+. .+..+..|+.
T Consensus 143 LEEPp~-----------~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~ 208 (647)
T PRK07994 143 LEEPPE-----------HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLAR 208 (647)
T ss_pred HHcCCC-----------CeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 987543 36788888889999999998 87 789999999999999988777544332 2334677887
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
.+.| +.++..+++..|... +...|+.+++...+
T Consensus 209 ~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 209 AADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 7666 788888888766532 33457777776554
No 76
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=3.5e-14 Score=161.52 Aligned_cols=222 Identities=15% Similarity=0.219 Sum_probs=146.4
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCcc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~ 239 (686)
.+..+|++++..+........+.....++. .....++|||++|||||+|++|+++++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 356799999876654433334444444431 123459999999999999999999976 56889999998
Q ss_pred ccchhhhH-HHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 240 FTDSEKSG-AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 240 ~~~~~~~~-~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
|....... .......|..- -..+.+|+||||+.+.++. .....+..+++.+.... .-+||
T Consensus 355 f~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke-----~tqeeLF~l~N~l~e~g------------k~III- 415 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE-----STQEEFFHTFNTLHNAN------------KQIVL- 415 (617)
T ss_pred HHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-----HHHHHHHHHHHHHHhcC------------CCEEE-
Confidence 87653222 11112233322 2346899999999996431 22223334444443211 01444
Q ss_pred ecCC-CC---CCccccccCCccce--EEEeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHhccCCCHHHHHHHHHHH
Q 005643 319 ATNR-PD---ELDLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFRTVGFSGADIRNLVNES 391 (686)
Q Consensus 319 aTN~-p~---~LD~aLlrpgRFd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~t~G~sgadL~~lv~eA 391 (686)
|+|. |. .+++.|.+ ||.. .+.+..||.+.|.+||+.++....+.-+. -+..|+.+..+ +.++|+.+++..
T Consensus 416 TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 416 SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 5555 33 57888988 9854 77999999999999999887765544222 35677776554 788999999987
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 392 GIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
...+...+ ..||.+.+++++...+
T Consensus 493 ~a~a~~~~-~~itl~la~~vL~~~~ 516 (617)
T PRK14086 493 TAFASLNR-QPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 77666555 4599998888887654
No 77
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.1e-14 Score=160.87 Aligned_cols=203 Identities=18% Similarity=0.270 Sum_probs=148.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC-------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~------------- 230 (686)
+..+.+|+||+|++.+++.|+..+.. .+.|.++||+||||||||++|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 45678999999999887777654332 246789999999999999999999987643
Q ss_pred -----------CeEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 231 -----------~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
.++.+++++ ..+...+|.+.+.+.. ....|++|||+|.+.. ..+|.|+..
T Consensus 75 ~C~~i~~~~~~Dv~eidaas-----~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~----------~A~NaLLK~ 139 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS-----NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN----------SAFNALLKT 139 (491)
T ss_pred HHHHHhccCCCCEEEEeccc-----CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH----------HHHHHHHHH
Confidence 233343322 1234457777766643 2346999999998842 367899999
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+++|.+|+.++.+.+.+++ |+ ..+.|..++.++..+.++..+...... ++..+..|++
T Consensus 140 LEePp~-----------~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~ 205 (491)
T PRK14964 140 LEEPAP-----------HVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAE 205 (491)
T ss_pred HhCCCC-----------CeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 987543 36788888888899999998 88 678999999999998888776654432 2334677887
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 411 (686)
.+.| +.+++.+++..+..++ ...||.+++.+.
T Consensus 206 ~s~G-slR~alslLdqli~y~----~~~It~e~V~~l 237 (491)
T PRK14964 206 NSSG-SMRNALFLLEQAAIYS----NNKISEKSVRDL 237 (491)
T ss_pred HcCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 7755 8888888888777554 236888888765
No 78
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.61 E-value=5.1e-14 Score=155.26 Aligned_cols=221 Identities=15% Similarity=0.197 Sum_probs=145.5
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCccccch
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFTDS 243 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~~~~~ 243 (686)
..+.++|.++. ++++..++.+.. ....+.+++|+||||||||++++.+++++ ++.+++++|......
T Consensus 28 ~P~~l~~Re~e---~~~l~~~l~~~~-----~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQ---IEELAFALRPAL-----RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHH---HHHHHHHHHHHh-----CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 44567777643 444444443221 01245679999999999999999999876 578999998765321
Q ss_pred h------------------h-hHHHHHHHHHHHHHh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC
Q 005643 244 E------------------K-SGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT 303 (686)
Q Consensus 244 ~------------------~-~~~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 303 (686)
. + .....+..+.+..+. ..+.||+|||+|.+..+. ....+..|+..++....
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~~-- 171 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYPG-- 171 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccCC--
Confidence 1 0 011122333333332 456899999999996211 12356666665554321
Q ss_pred CcccccccccEEEEEecCCCC---CCccccccCCccc-eEEEeCCCCHHHHHHHHHHHhcCC---CccccccHHHHHHhc
Q 005643 304 GIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAGK---QLAEDVNFEELVFRT 376 (686)
Q Consensus 304 ~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRFd-~~I~v~~Pd~~eR~~Il~~~l~~~---~l~~dvdl~~La~~t 376 (686)
.++.+|+++|..+ .+++.+.+ ||. ..|.+++++.++..+|++.++... ....+..+..+++.+
T Consensus 172 --------~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~ 241 (394)
T PRK00411 172 --------ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLT 241 (394)
T ss_pred --------CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHH
Confidence 1377888888754 56777766 663 578999999999999999876432 112233356677666
Q ss_pred cCC--CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 377 VGF--SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 377 ~G~--sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
.+. ..+.+-+++..|+..|..++...|+.+|+..|+++.
T Consensus 242 ~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 242 AREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 432 345566888999989988888999999999999876
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.9e-14 Score=166.55 Aligned_cols=193 Identities=20% Similarity=0.268 Sum_probs=136.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCe-------EEE-
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-------VFA- 235 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~f-------i~i- 235 (686)
+..+.+|+||+|++.+++.|+..+. .. +.+..+||+||||||||++||++|+.+++.- ..+
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~---~~--------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALT---QQ--------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---hC--------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 4567899999999988877765543 22 4567789999999999999999999987641 100
Q ss_pred eCc--------cccchh---hhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005643 236 SGA--------EFTDSE---KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (686)
Q Consensus 236 s~s--------~~~~~~---~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~ 300 (686)
+|. ++.+.. ..+...+|.+.+.+.. ....|+||||+|.|. ...+|.||..|+...
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT----------~eAqNALLKtLEEPP 147 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS----------RSSFNALLKTLEEPP 147 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC----------HHHHHHHHHHHhccC
Confidence 000 011110 1223345555554432 334699999999994 347899999998754
Q ss_pred ccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCC
Q 005643 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (686)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (686)
. .+++|++|+.+..|.+.|++ |+ .++.|.+++.++..+.|+..+....+. .+..+..|+..+.|
T Consensus 148 ~-----------~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G- 212 (944)
T PRK14949 148 E-----------HVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG- 212 (944)
T ss_pred C-----------CeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 3 36778788888999999998 88 789999999999999888777554332 22346778877666
Q ss_pred CHHHHHHHHHHHH
Q 005643 380 SGADIRNLVNESG 392 (686)
Q Consensus 380 sgadL~~lv~eA~ 392 (686)
+.+++.+++..+.
T Consensus 213 d~R~ALnLLdQal 225 (944)
T PRK14949 213 SMRDALSLTDQAI 225 (944)
T ss_pred CHHHHHHHHHHHH
Confidence 7888888887666
No 80
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.60 E-value=1.9e-14 Score=150.58 Aligned_cols=207 Identities=23% Similarity=0.331 Sum_probs=139.4
Q ss_pred cCCcccccceecCcccHH---HHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC---eEEEeC
Q 005643 164 SDTKSMYKEVVLGGDVWD---LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASG 237 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~---~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~---fi~is~ 237 (686)
.-.+.+++|.+|++.+.. .|+.+++.-+-| +++||||||||||+|||.|+.....+ |+.+|.
T Consensus 131 rmRPktL~dyvGQ~hlv~q~gllrs~ieq~~ip------------SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIP------------SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred hcCcchHHHhcchhhhcCcchHHHHHHHcCCCC------------ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 456789999999987543 444444443333 79999999999999999999988776 666654
Q ss_pred ccccchhhhHHHHHHHHHHHHHh-----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 238 AEFTDSEKSGAARINEMFSIARR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 238 s~~~~~~~~~~~~vr~lF~~Ak~-----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
.. .+...+|++|++++. ....|||||||+.+... ....+|-..+. .
T Consensus 199 t~------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks----------QQD~fLP~VE~-------------G 249 (554)
T KOG2028|consen 199 TN------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS----------QQDTFLPHVEN-------------G 249 (554)
T ss_pred cc------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh----------hhhcccceecc-------------C
Confidence 33 233458899998875 33589999999998421 12234433322 2
Q ss_pred cEEEEEec--CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhc---C--C---Cccc------cccHHHHHHhc
Q 005643 313 AVIFICAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA---G--K---QLAE------DVNFEELVFRT 376 (686)
Q Consensus 313 ~ViVIaaT--N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~---~--~---~l~~------dvdl~~La~~t 376 (686)
.|++|+|| |..-.|..+|++ |+ +++.+.....+....||.+-.. . . ++.. +--++.++..+
T Consensus 250 ~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls 326 (554)
T KOG2028|consen 250 DITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS 326 (554)
T ss_pred ceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc
Confidence 37888876 545689999999 88 6788888889998888876332 0 0 1111 12257788888
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhC---CCcccHHHHHHHHHH
Q 005643 377 VGFSGADIRNLVNESGIMSVRKG---HSKIQQQDIVDVLDK 414 (686)
Q Consensus 377 ~G~sgadL~~lv~eA~~~A~r~~---~~~It~~dl~~Al~~ 414 (686)
.|-..+.|..|--.+.+.+.|.| +..++.+|+.+++.+
T Consensus 327 dGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 327 DGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 88665555544333334445555 346888898888765
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.4e-14 Score=166.12 Aligned_cols=209 Identities=21% Similarity=0.292 Sum_probs=148.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeE--EEeCc---
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV--FASGA--- 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi--~is~s--- 238 (686)
+..+.+|+||+|++.+++.|...+.. . +.+.++||+||||+|||++|+++|+.++++-. ...|.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~---~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE---G--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 45678999999999888877766442 2 46788999999999999999999998765311 00111
Q ss_pred -----------cccch---hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005643 239 -----------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (686)
Q Consensus 239 -----------~~~~~---~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~ 300 (686)
++.+. ...+...++.+++.+.. ....|+||||+|.+. ...+|.||..|+...
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls----------~~A~NALLKtLEEPp 147 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS----------KSAFNAMLKTLEEPP 147 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC----------HHHHHHHHHHHHhCC
Confidence 11111 12234457777765532 234799999999873 235688898887643
Q ss_pred ccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCC
Q 005643 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (686)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (686)
. .+.+|.+||.+..+.+.+++ |+ ..+.|..++.++....|+..+....+. ++..+..|++.+.|
T Consensus 148 ~-----------~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G- 212 (709)
T PRK08691 148 E-----------HVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG- 212 (709)
T ss_pred C-----------CcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-
Confidence 2 36788888889999999887 88 678888999999999998777755443 22346788877654
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+.+++.+++..+... +...|+.+++...+
T Consensus 213 slRdAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 213 SMRDALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 888888988877654 34468887776654
No 82
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.60 E-value=4.6e-14 Score=151.08 Aligned_cols=204 Identities=19% Similarity=0.272 Sum_probs=132.7
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
++..+.+|+|++|++++++.+..++. + ...|..+||+||||+|||++|++++++.+.+++.+++++ ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~---~--------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVK---K--------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHh---c--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 35677899999999988887777654 2 235677888999999999999999999999999999887 22
Q ss_pred hhhhHHHHHHHHHHHHH-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 005643 243 SEKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (686)
Q Consensus 243 ~~~~~~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (686)
.......+........ ...+.||+|||+|.+... .. .+.|...++.... ++.+|++||
T Consensus 81 -~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------~~---~~~L~~~le~~~~-----------~~~~Ilt~n 139 (316)
T PHA02544 81 -IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------DA---QRHLRSFMEAYSK-----------NCSFIITAN 139 (316)
T ss_pred -HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------HH---HHHHHHHHHhcCC-----------CceEEEEcC
Confidence 1111111222111111 134789999999988321 11 2233333444322 257888999
Q ss_pred CCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhc---------CCCccccccHHHHHHhccCCCHHHHHHHHHHHH
Q 005643 322 RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA---------GKQLAEDVNFEELVFRTVGFSGADIRNLVNESG 392 (686)
Q Consensus 322 ~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~---------~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~ 392 (686)
.+..+++++++ || ..+.++.|+.+++.++++.++. +.++.++ .+..++....| |++.+++...
T Consensus 140 ~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~ 211 (316)
T PHA02544 140 NKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQ 211 (316)
T ss_pred ChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHH
Confidence 99999999998 99 4789999999999887764322 2222221 24666655443 4555555544
Q ss_pred HHHHHhCCCcccHHHHHH
Q 005643 393 IMSVRKGHSKIQQQDIVD 410 (686)
Q Consensus 393 ~~A~r~~~~~It~~dl~~ 410 (686)
..+. ...++..++..
T Consensus 212 ~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 212 RYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHc---cCCCCHHHHHH
Confidence 4332 23577666544
No 83
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.59 E-value=5.5e-14 Score=142.89 Aligned_cols=208 Identities=17% Similarity=0.247 Sum_probs=134.1
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~ 241 (686)
....+|++.+.. ..+..+..+..++.. ..+.+++|+||||||||++|+++++++ +.++++++|+.+.
T Consensus 9 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 9 PDDPTFDNFYAG-GNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCchhhcCcCcC-CcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 345788888842 334445554444332 246789999999999999999998876 5788999988876
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 005643 242 DSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (686)
Q Consensus 242 ~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (686)
... ..++.... .+.+|+|||+|.+... .+....+..++..+.... ..+|+.++.
T Consensus 79 ~~~-------~~~~~~~~--~~~lLvIDdi~~l~~~-----~~~~~~L~~~l~~~~~~~------------~~iIits~~ 132 (226)
T TIGR03420 79 QAD-------PEVLEGLE--QADLVCLDDVEAIAGQ-----PEWQEALFHLYNRVREAG------------GRLLIAGRA 132 (226)
T ss_pred HhH-------HHHHhhcc--cCCEEEEeChhhhcCC-----hHHHHHHHHHHHHHHHcC------------CeEEEECCC
Confidence 432 22333222 2459999999998421 111223333443332211 124444444
Q ss_pred CCCCCc---cccccCCcc--ceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005643 322 RPDELD---LEFVRPGRI--DRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 322 ~p~~LD---~aLlrpgRF--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A 395 (686)
.+..++ +.+.+ || ..++.+++|+.+++..+++.++....+. ++.-+..|+.. .+-+.+++.++++++...+
T Consensus 133 ~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 133 APAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRAS 209 (226)
T ss_pred ChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 444332 66776 66 4789999999999999998776543332 22236778875 5558999999999988766
Q ss_pred HHhCCCcccHHHHHHHH
Q 005643 396 VRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 396 ~r~~~~~It~~dl~~Al 412 (686)
..++ ..|+.+.+.+.+
T Consensus 210 ~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 210 LAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHhC-CCCCHHHHHHHh
Confidence 5555 468888776654
No 84
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=3.2e-14 Score=159.09 Aligned_cols=221 Identities=15% Similarity=0.243 Sum_probs=148.0
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCcc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~ 239 (686)
.+..||++.+..+...........+..+|. ...+++||||||+|||+|++++|+++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 567899999866655555555555555552 14569999999999999999999975 46789999988
Q ss_pred ccchhhhHH--HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 240 FTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 240 ~~~~~~~~~--~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
|........ ..+.. |.......+.+|+|||++.+.++. .....+-.+++.+.... ..+||
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~-----~~q~elf~~~n~l~~~~------------k~iIi 232 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT-----GVQTELFHTFNELHDSG------------KQIVI 232 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH-----HHHHHHHHHHHHHHHcC------------CeEEE
Confidence 766532211 12222 222222357899999999886431 11112223333332211 13666
Q ss_pred EecCCCCC---CccccccCCccc--eEEEeCCCCHHHHHHHHHHHhcC--CCccccccHHHHHHhccCCCHHHHHHHHHH
Q 005643 318 CATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAG--KQLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (686)
Q Consensus 318 aaTN~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~La~~t~G~sgadL~~lv~e 390 (686)
++.+.|.. +++.+.+ ||. ..+.+.+||.+.|.+|++..+.. ..+.++ .+..||....| +.++|..+++.
T Consensus 233 tsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~e-v~~~Ia~~~~~-~~R~L~g~l~~ 308 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIK 308 (440)
T ss_pred ECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHhcccc-CHHHHHHHHHH
Confidence 66566664 4567777 884 47889999999999999987754 334433 37778877665 88999999998
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 391 SGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
....+...+ ..||.+.+.+++...+
T Consensus 309 l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 309 LLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 877776555 4599988888887653
No 85
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.6e-14 Score=159.65 Aligned_cols=203 Identities=18% Similarity=0.231 Sum_probs=143.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
+..+.+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 45678999999999988888776653 2356678999999999999999999987531
Q ss_pred -----------eEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005643 232 -----------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 232 -----------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~l 296 (686)
++.++++. ..+...++.+.+.+.. ..+.||+|||+|.+. ...++.|+..|
T Consensus 76 c~~i~~~~h~dv~el~~~~-----~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls----------~~a~naLLk~L 140 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS-----NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS----------KSAFNALLKTL 140 (504)
T ss_pred hHHHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC----------HHHHHHHHHHH
Confidence 33333321 1123345555444432 346799999999773 24578888888
Q ss_pred cCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHh
Q 005643 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFR 375 (686)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~ 375 (686)
+.... .+++|.+||.+..+.+.+.+ |+ ..+.|..|+.++....++..+....+. ++..+..|+..
T Consensus 141 Eep~~-----------~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~ 206 (504)
T PRK14963 141 EEPPE-----------HVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARL 206 (504)
T ss_pred HhCCC-----------CEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 76432 36777788889999999998 87 579999999999999998877654443 23346777777
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 376 TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 376 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+.| +.+++.++++.+.. . ...||.+++.+.+
T Consensus 207 s~G-dlR~aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 207 ADG-AMRDAESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred cCC-CHHHHHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 665 66666676665532 1 2368888877664
No 86
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=5.4e-14 Score=161.35 Aligned_cols=204 Identities=20% Similarity=0.287 Sum_probs=146.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
...+.+|+||+|++.+.+.|+..+.. .+.+..+||+||+|||||++|+.+|+.++++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 34678999999999888777665443 2356789999999999999999999987542
Q ss_pred ------------eEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 232 ------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
++.++++. ..+...++.+.+.+.. ....|++|||+|.+. ....|.|+..
T Consensus 78 ~C~~i~~g~~~dv~eidaas-----~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt----------~~a~naLLKt 142 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS-----NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS----------TGAFNALLKT 142 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc-----cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------HHHHHHHHHH
Confidence 22222211 1334557777776653 234699999999984 2367889998
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+++|.+|+.++.+.+.+++ |+ ..+.|.+|+.++....++..+....+. ++..+..++.
T Consensus 143 LEepp~-----------~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~ 208 (559)
T PRK05563 143 LEEPPA-----------HVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIAR 208 (559)
T ss_pred hcCCCC-----------CeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 876432 36777778889999999998 88 468899999999999988777654432 2234677787
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
.+.| +.+++.+++..+...+ ...|+.+++..++
T Consensus 209 ~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 209 AAEG-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 7665 7888888887766542 3458887776543
No 87
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=3e-14 Score=156.58 Aligned_cols=191 Identities=16% Similarity=0.238 Sum_probs=131.7
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeE-EEeC---------
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV-FASG--------- 237 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi-~is~--------- 237 (686)
..|++|+|++.+++.|+..+..-+++ +...+.+.|.++||+||||+|||++|+++|+.+.+.-- ...|
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 36999999999999988887754332 33445567899999999999999999999997654310 0001
Q ss_pred -----ccc--cch--hhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCC
Q 005643 238 -----AEF--TDS--EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTG 304 (686)
Q Consensus 238 -----s~~--~~~--~~~~~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ 304 (686)
.++ ... ...+...+|.+++.+... ...|+||||+|.+.. ...|.||..|+.....
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----------~aanaLLk~LEep~~~-- 147 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----------RAANALLKAVEEPPPR-- 147 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----------HHHHHHHHHhhcCCCC--
Confidence 111 111 112344578888877642 346999999999942 2458899988764332
Q ss_pred cccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHH
Q 005643 305 IDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADI 384 (686)
Q Consensus 305 ~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL 384 (686)
+++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+++.... ... ......++..+.|..+..+
T Consensus 148 ---------~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 148 ---------TVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred ---------CeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 4555555558999999999 88 789999999999888776322 222 2345678888888766655
Q ss_pred HHHH
Q 005643 385 RNLV 388 (686)
Q Consensus 385 ~~lv 388 (686)
.-+.
T Consensus 212 ~l~~ 215 (394)
T PRK07940 212 RLAT 215 (394)
T ss_pred HHhc
Confidence 4443
No 88
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=1.4e-13 Score=153.70 Aligned_cols=227 Identities=13% Similarity=0.150 Sum_probs=141.1
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~ 241 (686)
.++.||++.+..+..+.....+..+.+++. ..+....++++||||||+|||+|++++++++ +..++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 567899999855544433334444433331 0111234679999999999999999999875 7889999988776
Q ss_pred chhhhHHH-HHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 242 DSEKSGAA-RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 242 ~~~~~~~~-~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
........ .-...|.... ..+.+|+|||++.+.++. .....+-.+++.+.... ..+|++++
T Consensus 182 ~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-----~~qeelf~l~N~l~~~~------------k~IIlts~ 243 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-----ATQEEFFHTFNSLHTEG------------KLIVISST 243 (445)
T ss_pred HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-----hhHHHHHHHHHHHHHCC------------CcEEEecC
Confidence 54211111 0112233322 346799999999985431 11222223333221100 12555554
Q ss_pred CCCC---CCccccccCCccc--eEEEeCCCCHHHHHHHHHHHhcCCCccc-cccHHHHHHhccCCCHHHHHHHHHHHHH-
Q 005643 321 NRPD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGFSGADIRNLVNESGI- 393 (686)
Q Consensus 321 N~p~---~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~sgadL~~lv~eA~~- 393 (686)
+.|. .+++.|.+ ||. ..+.+.+|+.++|.+|++..+....+.- +.-+..|+....+ +.+.|.++++..+.
T Consensus 244 ~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 244 CAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred CCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 4454 56788988 995 6899999999999999998776544332 2225567776554 67788888887753
Q ss_pred --HHHHhCCCcccHHHHHHHHHHHH
Q 005643 394 --MSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 394 --~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
.+.-.+ ..|+.+++.+++...+
T Consensus 321 ~a~~~~~~-~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 321 VAYKKLSH-QLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 222223 4699999999987754
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.7e-14 Score=161.35 Aligned_cols=209 Identities=18% Similarity=0.284 Sum_probs=145.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCe------E-EEe
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF------V-FAS 236 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~f------i-~is 236 (686)
+..+.+|+||+|++.+++.|...+.. . +.+..+||+||+|||||++|+++|+.+++.- . .-.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~---~--------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQ---Q--------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 45668999999999877777665442 2 4567889999999999999999999886510 0 000
Q ss_pred C--------------ccccch---hhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 237 G--------------AEFTDS---EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 237 ~--------------s~~~~~---~~~~~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
| .++.+. ...+...++.+.+.+... ...|++|||+|.+.. ...|.||..
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~----------~a~NaLLKt 147 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN----------TAFNAMLKT 147 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH----------HHHHHHHHh
Confidence 0 111111 112334567776665432 246999999999942 357889988
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+++|.+|+.+..+.+.+++ |+ .+++|..++.++..+.++..+....+. ++..+..|+.
T Consensus 148 LEEPP~-----------~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~ 213 (618)
T PRK14951 148 LEEPPE-----------YLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR 213 (618)
T ss_pred cccCCC-----------CeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 876433 36778788888888888888 87 789999999999998888776554433 2234678888
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
.+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 214 ~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 214 AARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 7666 788888887766543 34468877776654
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=5.5e-14 Score=164.63 Aligned_cols=210 Identities=18% Similarity=0.195 Sum_probs=139.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
...+.+|+|++|++.+......+...+... ...++|||||||||||++|+++|+..+.+|+.+++...
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--- 88 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--- 88 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh---
Confidence 455789999999997664333333333322 23479999999999999999999999999998887531
Q ss_pred hhhHHHHHHHHHHHHH-----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 244 EKSGAARINEMFSIAR-----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 244 ~~~~~~~vr~lF~~Ak-----~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
+...++..+..+. .....+|||||+|.+.. ...+.|+..++.. .+++|+
T Consensus 89 ---~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~----------~qQdaLL~~lE~g-------------~IiLI~ 142 (725)
T PRK13341 89 ---GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK----------AQQDALLPWVENG-------------TITLIG 142 (725)
T ss_pred ---hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH----------HHHHHHHHHhcCc-------------eEEEEE
Confidence 1122333333331 13457999999999842 1235566655431 267776
Q ss_pred ecC--CCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhc-------CCCcc-ccccHHHHHHhccCCCHHHHHHHH
Q 005643 319 ATN--RPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA-------GKQLA-EDVNFEELVFRTVGFSGADIRNLV 388 (686)
Q Consensus 319 aTN--~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~-------~~~l~-~dvdl~~La~~t~G~sgadL~~lv 388 (686)
+|+ ....+++++++ |+ ..+.+++++.+++..+++..+. ...+. ++..+..|+....| +.+.+.+++
T Consensus 143 aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 143 ATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred ecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 653 33568899998 75 5789999999999999998765 11111 22236778877754 677888888
Q ss_pred HHHHHHHHHhCC--CcccHHHHHHHHHHH
Q 005643 389 NESGIMSVRKGH--SKIQQQDIVDVLDKQ 415 (686)
Q Consensus 389 ~eA~~~A~r~~~--~~It~~dl~~Al~~~ 415 (686)
+.+...+...+. ..|+.+++.+++.+.
T Consensus 219 e~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 219 ELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 876643322222 237888888877653
No 91
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=7.8e-14 Score=165.20 Aligned_cols=209 Identities=20% Similarity=0.195 Sum_probs=142.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCe-------EEE-
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-------VFA- 235 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~f-------i~i- 235 (686)
+..+.+|+||+|++.+++.|+..+. + .+.+..+||+||+|||||++|+.+|+.+++.- -.+
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~---~--------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALD---S--------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---h--------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 4567899999999988877766544 2 24567799999999999999999999986521 000
Q ss_pred eC----------ccccchh---hhHHHHHHHHHHHHH----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005643 236 SG----------AEFTDSE---KSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (686)
Q Consensus 236 s~----------s~~~~~~---~~~~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~ 298 (686)
+| .++.+.. ..+...+|++-+.+. .....|+||||+|.|. ....|.||+.|+.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt----------~~a~NaLLK~LEE 146 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT----------PQGFNALLKIVEE 146 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC----------HHHHHHHHHHHhC
Confidence 00 1111110 112334454433332 2445799999999994 2467889999987
Q ss_pred CcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhcc
Q 005643 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTV 377 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~ 377 (686)
.... ++||++|+.++.|-+.|++ |+ .++.|..++.++..++|+..+....+. .+..+..|++...
T Consensus 147 pP~~-----------~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 147 PPEH-----------LKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred CCCC-----------eEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5443 6788888888889999988 87 689999999999998888877654443 2233566776655
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005643 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 378 G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 411 (686)
| +.+++.++++.....+ +...||.+++...
T Consensus 213 G-dlR~Al~eLEKLia~~---~~~~IT~e~V~al 242 (824)
T PRK07764 213 G-SVRDSLSVLDQLLAGA---GPEGVTYERAVAL 242 (824)
T ss_pred C-CHHHHHHHHHHHHhhc---CCCCCCHHHHHHH
Confidence 5 7777777777655322 3445887776543
No 92
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.56 E-value=1.7e-13 Score=140.96 Aligned_cols=208 Identities=15% Similarity=0.168 Sum_probs=131.2
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~ 241 (686)
.+..+|++.+.. .-...+..+..+...+ .+..++||||||||||+|++++++++ |..+.+++.....
T Consensus 16 ~~~~~fd~f~~~-~n~~a~~~l~~~~~~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 16 PDDETFASFYPG-DNDSLLAALQNALRQE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred CCcCCccccccC-ccHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 456689998744 3333444444433333 23579999999999999999998875 4456666655432
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 005643 242 DSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (686)
Q Consensus 242 ~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (686)
.. ..++.+.... ..+|+|||++.+.+ .......+..+++.+..... .-+++++++
T Consensus 86 ~~-------~~~~~~~~~~--~dlliiDdi~~~~~-----~~~~~~~lf~l~n~~~e~g~-----------~~li~ts~~ 140 (235)
T PRK08084 86 WF-------VPEVLEGMEQ--LSLVCIDNIECIAG-----DELWEMAIFDLYNRILESGR-----------TRLLITGDR 140 (235)
T ss_pred hh-------hHHHHHHhhh--CCEEEEeChhhhcC-----CHHHHHHHHHHHHHHHHcCC-----------CeEEEeCCC
Confidence 21 1122222222 25899999999853 22333445455544322110 025555555
Q ss_pred CCCC---CccccccCCccc--eEEEeCCCCHHHHHHHHHHHhcCC--CccccccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005643 322 RPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGK--QLAEDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (686)
Q Consensus 322 ~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~ 394 (686)
.|.. +.+.|++ |+. ..+.+.+|+.+++.++++.++... .+.++ -+..|+++..| +.+.+.++++.....
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~-v~~~L~~~~~~-d~r~l~~~l~~l~~~ 216 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPED-VGRFLLKRLDR-EMRTLFMTLDQLDRA 216 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 6555 5789998 986 689999999999999998765543 33333 36778877665 788899988875434
Q ss_pred HHHhCCCcccHHHHHHHH
Q 005643 395 SVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 395 A~r~~~~~It~~dl~~Al 412 (686)
+..+ +..||.+.+.+++
T Consensus 217 ~l~~-~~~it~~~~k~~l 233 (235)
T PRK08084 217 SITA-QRKLTIPFVKEIL 233 (235)
T ss_pred HHhc-CCCCCHHHHHHHH
Confidence 4333 3458988777665
No 93
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1e-13 Score=158.67 Aligned_cols=210 Identities=20% Similarity=0.235 Sum_probs=143.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC-------eEEE-
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FVFA- 235 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------fi~i- 235 (686)
+..+.+|+||+|++.+++.|+..+. .. +.+..+||+||+|||||++|+++|+.+++. +-.+
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~---~~--------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD---AG--------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 4567899999999988777766544 22 466778999999999999999999987642 1000
Q ss_pred eC----------ccccch---hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005643 236 SG----------AEFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (686)
Q Consensus 236 s~----------s~~~~~---~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~ 298 (686)
+| .++.+. ...+...++++.+.+.. ....|++|||+|.+.. ...|.||..|+.
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~----------~A~NALLK~LEE 144 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT----------AGFNALLKIVEE 144 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH----------HHHHHHHHHHhc
Confidence 00 011111 01133445555444432 2346999999999842 367889999887
Q ss_pred CcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhcc
Q 005643 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTV 377 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~ 377 (686)
... .+++|.+|+.++.|.+.|++ |+ .++.|..++.++..+.++..+...... ++..+..++..+
T Consensus 145 pp~-----------~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s- 209 (584)
T PRK14952 145 PPE-----------HLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG- 209 (584)
T ss_pred CCC-----------CeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-
Confidence 543 37888888888999999998 86 689999999999888888777654432 222355566554
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 378 G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
|-+.+++.++++.+...+ +...||.+++...+
T Consensus 210 ~GdlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 210 GGSPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred CCCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 447888888888765432 24568877776553
No 94
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.1e-14 Score=160.86 Aligned_cols=170 Identities=22% Similarity=0.330 Sum_probs=129.2
Q ss_pred ceecCcccHHHHHHHHHH--hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch------
Q 005643 172 EVVLGGDVWDLLDELMIY--MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS------ 243 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~--l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~------ 243 (686)
|--|.+++|+.+-|++.- |++. -..+-++|+||||+|||+++|+||..+|..|+.+|..-+.+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 556778888888887654 3333 345678999999999999999999999999999997665432
Q ss_pred ----hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc----ccccEE
Q 005643 244 ----EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS----LRQAVI 315 (686)
Q Consensus 244 ----~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~----~~~~Vi 315 (686)
+|....++-+..+..+.++| +++|||||.++ +.-.+++. ..||+.||...+.+-.|++- .-+.|+
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG-~g~qGDPa-----sALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG-SGHQGDPA-----SALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC-CCCCCChH-----HHHHHhcChhhccchhhhccccccchhheE
Confidence 12223456677777777776 78899999997 32333433 67888888766555433321 125699
Q ss_pred EEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhc
Q 005643 316 FICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 316 VIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
+|||.|..+.|+++|+. |+ ..|+++-+..++..+|-+.|+-
T Consensus 557 FicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 99999999999999999 99 5899999999999999998863
No 95
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.3e-14 Score=159.74 Aligned_cols=209 Identities=18% Similarity=0.266 Sum_probs=145.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeE--EEeCc---
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV--FASGA--- 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi--~is~s--- 238 (686)
+..+.+|+||+|++.+++.|...+.. . +.+..+||+||||+|||++|+++|+.+++..- .-.|.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~---~--------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ---Q--------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc---C--------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34567999999999888777665442 2 35678999999999999999999998865210 00111
Q ss_pred -----------cccch---hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005643 239 -----------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (686)
Q Consensus 239 -----------~~~~~---~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~ 300 (686)
++.+. ...+...++.+.+.+.. ....|++|||+|.+. ....|.||..|+...
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls----------~~a~naLLK~LEepp 147 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS----------KSAFNAMLKTLEEPP 147 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC----------HHHHHHHHHHHhCCC
Confidence 11111 01234457777766643 224699999999884 235788999988743
Q ss_pred ccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCC
Q 005643 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (686)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (686)
. .+++|.+|+.++.+.+.+++ |+ ..++|..++.++..+.+...+....+. .+..+..|+..+.|
T Consensus 148 ~-----------~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G- 212 (527)
T PRK14969 148 E-----------HVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG- 212 (527)
T ss_pred C-----------CEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 3 36777788888888888888 87 689999999999888887766544333 22345677777554
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+.+++.+++..+... +...|+.+++...+
T Consensus 213 slr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 213 SMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 788888888776543 45568888877654
No 96
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.56 E-value=1.2e-13 Score=152.62 Aligned_cols=187 Identities=25% Similarity=0.308 Sum_probs=118.3
Q ss_pred cccccc-eecCcccHHHHHHHHH-H---hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 167 KSMYKE-VVLGGDVWDLLDELMI-Y---MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 167 ~~~f~d-vvG~~e~k~~L~elv~-~---l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
...+++ |+|++++|+.|...+. . +.....-.........++||+||||||||++|+++|..++.||+.++++.+.
T Consensus 66 ~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 66 KAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT 145 (412)
T ss_pred HHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 344554 8999999998866542 1 1111000000112457899999999999999999999999999999999887
Q ss_pred chh--hhH-HHHHHHHHHHH----HhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccC--Ccccc
Q 005643 242 DSE--KSG-AARINEMFSIA----RRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERT--GIDRF 308 (686)
Q Consensus 242 ~~~--~~~-~~~vr~lF~~A----k~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~--~~~~~ 308 (686)
+.. +.. ...+..++..+ ....++||||||||.+..++.+ .+.....+++.||..|++..... ...+.
T Consensus 146 ~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 146 EAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred cCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 642 322 22344444322 2346799999999999755221 12223457788999998643111 11122
Q ss_pred cccccEEEEEecCCCC----------------------------------------------------CCccccccCCcc
Q 005643 309 SLRQAVIFICATNRPD----------------------------------------------------ELDLEFVRPGRI 336 (686)
Q Consensus 309 ~~~~~ViVIaaTN~p~----------------------------------------------------~LD~aLlrpgRF 336 (686)
....+.++|.|+|-.. -+.|+|+ ||+
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRl 303 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRL 303 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCC
Confidence 2223455555555410 0233343 599
Q ss_pred ceEEEeCCCCHHHHHHHHH
Q 005643 337 DRRLYIGLPDAKQRVQIFD 355 (686)
Q Consensus 337 d~~I~v~~Pd~~eR~~Il~ 355 (686)
|..+.|.+.+.+...+|+.
T Consensus 304 d~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 304 PVVATLEELDEEALVRILT 322 (412)
T ss_pred CeeeecCCCCHHHHHHHHH
Confidence 9999999999999999986
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.56 E-value=1.3e-13 Score=149.79 Aligned_cols=205 Identities=22% Similarity=0.324 Sum_probs=144.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
+..+.+|+|++|++++++.|.+.+. + .+.|..+||+||||+|||++|+++|+.+..+
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~---~--------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIK---N--------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHH---c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 3456899999999988877776553 2 2356789999999999999999999987532
Q ss_pred ------------eEEEeCccccchhhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 232 ------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
++.+++.. ..+...++.+++.+... ...||+|||+|.+.. ...+.|+..
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~----------~~~~~Ll~~ 140 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS-----NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK----------SAFNALLKT 140 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc-----cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH----------HHHHHHHHH
Confidence 22222211 12334567777766532 235999999998842 356788888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
++.... .+++|.+||.++.+.+++++ |+ ..+++++|+.++..++++.+++..... ++..+..++.
T Consensus 141 le~~~~-----------~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~ 206 (355)
T TIGR02397 141 LEEPPE-----------HVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIAR 206 (355)
T ss_pred HhCCcc-----------ceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 866332 36777788888888899988 88 578999999999999998877654432 2234566777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (686)
.+.| +.+.+.+.++.+...+ ...|+.+++.+++.
T Consensus 207 ~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 207 AADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 6654 6777777776666543 23599999877664
No 98
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.55 E-value=1.9e-13 Score=163.88 Aligned_cols=195 Identities=19% Similarity=0.269 Sum_probs=134.0
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEEeC
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFASG 237 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~is~ 237 (686)
-.|+.|+|.++ +++.++..|... .+.+++|+||||||||++|+++|.+. +.+++.++.
T Consensus 176 ~~~~~~igr~~---ei~~~~~~L~r~---------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREK---EIERVIQILGRR---------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHH---HHHHHHHHHccc---------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 45888998884 455555555443 45689999999999999999999976 467899998
Q ss_pred ccccch---hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccE
Q 005643 238 AEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV 314 (686)
Q Consensus 238 s~~~~~---~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~V 314 (686)
+.+... .+..+.+++.+|+.++...++||||||||.+.+.+...+. ....+-|...+.. ..+
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~--~~~a~lLkp~l~r-------------g~l 308 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA--IDAANILKPALAR-------------GEL 308 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc--ccHHHHhHHHHhC-------------CCc
Confidence 877632 3566789999999998888999999999999865432221 1122333333332 237
Q ss_pred EEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhc------CCCccccccHHHHHHhccCCCH--
Q 005643 315 IFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA------GKQLAEDVNFEELVFRTVGFSG-- 381 (686)
Q Consensus 315 iVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~------~~~l~~dvdl~~La~~t~G~sg-- 381 (686)
.+|++|+..+ ..|+++.+ ||. .|.++.|+.++...|++.... +..+. +..+..++..+.+|.+
T Consensus 309 ~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~-deal~~i~~ls~~yi~~r 384 (821)
T CHL00095 309 QCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSIS-DKALEAAAKLSDQYIADR 384 (821)
T ss_pred EEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCccc
Confidence 8999998764 47899999 995 589999999999999874321 12222 2235666666665533
Q ss_pred ---HHHHHHHHHHHH
Q 005643 382 ---ADIRNLVNESGI 393 (686)
Q Consensus 382 ---adL~~lv~eA~~ 393 (686)
...-.++.+|+.
T Consensus 385 ~lPdkaidlld~a~a 399 (821)
T CHL00095 385 FLPDKAIDLLDEAGS 399 (821)
T ss_pred cCchHHHHHHHHHHH
Confidence 333344555443
No 99
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.5e-13 Score=157.11 Aligned_cols=204 Identities=21% Similarity=0.245 Sum_probs=141.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
+..+.+|+||+|++.+++.|...+.. . +.+..+||+||||||||++|+++|+.+++.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~---~--------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE---N--------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc---C--------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 45678999999999888877776542 1 345689999999999999999999988653
Q ss_pred ------------eEEEeCccccchhhhHHHHHHHHHHHHH----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 232 ------------FVFASGAEFTDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 232 ------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
++.+++.. ..+...++.+.+.+. .....||||||+|.+. ...++.|+..
T Consensus 78 sC~~i~~g~hpDv~eId~a~-----~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt----------~~a~naLLk~ 142 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS-----NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT----------REAFNALLKT 142 (624)
T ss_pred HHHHHhcCCCCceEEEeccc-----ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC----------HHHHHHHHHH
Confidence 23333211 112233444333222 2335799999999994 2356888888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+++|++||.+..+.+.|++ |+ ..+.|+.++.++...+|+..+...... ++..+..|+.
T Consensus 143 LEEP~~-----------~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 143 LEEPPA-----------RVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred hhccCC-----------CEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 876432 36888888888888888888 88 578999999999999888766544432 2334677777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
.+.| +.+++.+++..+. ..+...|+.+++.+++
T Consensus 209 ~s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HcCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 7655 5566666666542 2345579988887665
No 100
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.54 E-value=5.8e-14 Score=168.35 Aligned_cols=165 Identities=16% Similarity=0.245 Sum_probs=122.9
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEE
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~i 235 (686)
.+-.+++|+|.+. +++.++..|... ...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~---ei~~~i~iL~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDE---EIRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHH---HHHHHHHHHhcC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3457899999984 566666665544 23579999999999999999999987 7789999
Q ss_pred eCccccch---hhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 005643 236 SGAEFTDS---EKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (686)
Q Consensus 236 s~s~~~~~---~~~~~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (686)
+.+.+... .+....+++.+|+.+.. ..|+||||||+|.+.+.+.+.+. ....+.|...+..
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~--~d~~~~lkp~l~~------------- 305 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA--MDAGNMLKPALAR------------- 305 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc--hhHHHHhcchhhc-------------
Confidence 88876532 35667889999988644 56899999999999765322211 1122333333221
Q ss_pred ccEEEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC
Q 005643 312 QAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG 360 (686)
Q Consensus 312 ~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~ 360 (686)
..+.+|+||+..+ .+|+|+.| ||+ .|.++.|+.+++..|++.+...
T Consensus 306 g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 306 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 2389999999876 48999999 997 5889999999999999866543
No 101
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.3e-13 Score=154.52 Aligned_cols=204 Identities=19% Similarity=0.277 Sum_probs=140.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
+..+.+|+||+|++.+++.|...+. .. +.+..+||+||||||||++|+++|+.++..
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~---~~--------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALE---TQ--------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 4456899999999988777665543 22 356779999999999999999999987641
Q ss_pred ------------eEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 232 ------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
++.+++. ...+...++.+.+.+.. ....|+||||+|.+. ....|.||..
T Consensus 78 sC~~i~~~~~~dlieidaa-----s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls----------~~a~naLLK~ 142 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAA-----SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS----------KQSFNALLKT 142 (546)
T ss_pred HHHHHhcCCCCceEEeecc-----cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc----------HHHHHHHHHH
Confidence 1222211 11223345555554432 235699999999984 2367889988
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+++|++|+.+..+.+.+++ |+ ..++|..++.++....++..+....+. .+..+..++.
T Consensus 143 LEepp~-----------~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 143 LEEPPE-----------YVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HhcCCC-----------CceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 887443 25677777778888888888 88 789999999999888888766544332 2334667777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
.+. -+.+++.+++..+...+ + ..|+.+++.+++
T Consensus 209 ~s~-GdlR~alnlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 209 HAK-GSLRDALSLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred HcC-CCHHHHHHHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 764 47788888887766443 2 458887777643
No 102
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.1e-13 Score=156.28 Aligned_cols=172 Identities=24% Similarity=0.279 Sum_probs=128.5
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch--------
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-------- 243 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-------- 243 (686)
|-.|.+++|+.+-|.+.-.+.. .. ....-++|+||||+|||+|+++||+.+|.+|+.++..-..+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~---~~---~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT---KK---LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh---cc---CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 4467788888777765543222 11 112357899999999999999999999999999997665432
Q ss_pred --hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc----ccccEEEE
Q 005643 244 --EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS----LRQAVIFI 317 (686)
Q Consensus 244 --~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~----~~~~ViVI 317 (686)
.|....++-+-..+|...+| +++|||||.++.. -.+++. ..||+.||.-+++.-.|++- .-+.|++|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPa-----SALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPA-----SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChH-----HHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 12223456677788888877 7889999999643 333433 68999998876665434321 12579999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhc
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
+|+|..+.++..|+. |+ ..|++.-++.++..+|-+.|+-
T Consensus 471 aTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 471 ATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999998 99 5899999999999999998863
No 103
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.54 E-value=3.3e-13 Score=141.16 Aligned_cols=210 Identities=19% Similarity=0.277 Sum_probs=130.4
Q ss_pred ccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch---hhh----HHHH
Q 005643 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS---EKS----GAAR 250 (686)
Q Consensus 178 e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~---~~~----~~~~ 250 (686)
.+++.++.+..++... ..+||+||||||||++|+++|...|.|++.++|..-... .+. ....
T Consensus 6 ~~~~l~~~~l~~l~~g-----------~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~ 74 (262)
T TIGR02640 6 AVKRVTSRALRYLKSG-----------YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKK 74 (262)
T ss_pred HHHHHHHHHHHHHhcC-----------CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhh
Confidence 3455566666655433 579999999999999999999999999999998763321 110 0000
Q ss_pred H-HH-------------------HHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC-Cc----
Q 005643 251 I-NE-------------------MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT-GI---- 305 (686)
Q Consensus 251 v-r~-------------------lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~-~~---- 305 (686)
+ .. .+..|.. .+.+|+||||+.+.. .+.+.|+..|+...-.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~-~g~~lllDEi~r~~~----------~~q~~Ll~~Le~~~~~i~~~~~~~ 143 (262)
T TIGR02640 75 VHDQFIHNVVKLEDIVRQNWVDNRLTLAVR-EGFTLVYDEFTRSKP----------ETNNVLLSVFEEGVLELPGKRGTS 143 (262)
T ss_pred HHHHHHHHhhhhhcccceeecCchHHHHHH-cCCEEEEcchhhCCH----------HHHHHHHHHhcCCeEEccCCCCCC
Confidence 0 00 1112222 246999999998732 35667777776432110 00
Q ss_pred ccccccccEEEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccc--cHHHHHHhcc-
Q 005643 306 DRFSLRQAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV--NFEELVFRTV- 377 (686)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~La~~t~- 377 (686)
.......++.||+|+|... .+++++++ || ..+.++.|+.++-.+|++.+.. ..... .+-.++..+.
T Consensus 144 ~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~ 217 (262)
T TIGR02640 144 RYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRA 217 (262)
T ss_pred ceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHh
Confidence 0112334678999999763 56889998 99 6899999999999999998752 22111 1112221111
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 378 ---GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 378 ---G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
-...+ ++.++.-+...+....+..++.+|+.+.+..++
T Consensus 218 ~~~~~~~~-~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 218 SGDEITSG-LRASLMIAEVATQQDIPVDVDDEDFVDLCIDIL 258 (262)
T ss_pred hCCccCCc-HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHh
Confidence 11111 555555555555555667788888888877765
No 104
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.54 E-value=1.3e-13 Score=142.31 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=128.5
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------eEEEe
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------FVFAS 236 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------fi~is 236 (686)
+++.+.+|+|++|++.+.+.|..-+.- ++ -.++|||||||||||+.|+++|.+++.+ +...+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-~~-----------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-RI-----------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-cC-----------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 467789999999999888887765544 22 2379999999999999999999998762 23334
Q ss_pred CccccchhhhHHHHHHHHHHHHHh------c---C-CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc
Q 005643 237 GAEFTDSEKSGAARINEMFSIARR------N---A-PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID 306 (686)
Q Consensus 237 ~s~~~~~~~~~~~~vr~lF~~Ak~------~---~-P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~ 306 (686)
.++..... .....+ .-|.+... . . +.|++|||.|.+.. ...+.|...|+.+...
T Consensus 96 aSderGis-vvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts----------daq~aLrr~mE~~s~~---- 159 (346)
T KOG0989|consen 96 ASDERGIS-VVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS----------DAQAALRRTMEDFSRT---- 159 (346)
T ss_pred cccccccc-chhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhH----------HHHHHHHHHHhccccc----
Confidence 44433221 111111 12222211 1 1 26999999999953 4678899999886544
Q ss_pred cccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHhccCCCHHHHH
Q 005643 307 RFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFRTVGFSGADIR 385 (686)
Q Consensus 307 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~t~G~sgadL~ 385 (686)
+.+|..||.++.|..-+.+ |+ ..+.|+....+.....|+..+....+.-|. .+..++..+.| +-++-.
T Consensus 160 -------trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 160 -------TRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred -------eEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 5788889999999999998 88 467787777777777777666655544332 36777777655 444444
Q ss_pred HHHHHHH
Q 005643 386 NLVNESG 392 (686)
Q Consensus 386 ~lv~eA~ 392 (686)
..++.++
T Consensus 229 t~Lqsls 235 (346)
T KOG0989|consen 229 TTLQSLS 235 (346)
T ss_pred HHHHHhh
Confidence 4444443
No 105
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.6e-13 Score=157.17 Aligned_cols=209 Identities=18% Similarity=0.326 Sum_probs=146.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeE---EEeCc--
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV---FASGA-- 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi---~is~s-- 238 (686)
...+.+|+||+|++.+++.|+..+.. . +.+..+||+||||+|||++|+++|+.+.++-- .-.|.
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~---~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS---N--------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 45678999999999888777765542 2 45778999999999999999999998765311 00111
Q ss_pred --------cccchh---hhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC
Q 005643 239 --------EFTDSE---KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT 303 (686)
Q Consensus 239 --------~~~~~~---~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 303 (686)
++.+.. ..+...++.+.+.+.. ....|++|||+|.+.. ...+.||..|+....
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~----------~A~NALLKtLEEPP~-- 147 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK----------SAFNALLKTLEEPPK-- 147 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH----------HHHHHHHHHhhcCCC--
Confidence 111111 1234557777776654 2347999999999842 367889998887433
Q ss_pred CcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccc-cccHHHHHHhccCCCHH
Q 005643 304 GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGFSGA 382 (686)
Q Consensus 304 ~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~sga 382 (686)
.+++|.+|+.++.|.+.+++ |+ ..+.|.+|+.++....++..+....+.- +..+..+|..+.| +.+
T Consensus 148 ---------~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR 214 (725)
T PRK07133 148 ---------HVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLR 214 (725)
T ss_pred ---------ceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 36788888889999999998 88 5899999999999988887665444332 2236677777655 677
Q ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 383 DIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 383 dL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
++.+++..+.... ...|+.+++.+++
T Consensus 215 ~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 215 DALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 7777777665432 2348888876654
No 106
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.53 E-value=5.5e-13 Score=136.14 Aligned_cols=202 Identities=15% Similarity=0.208 Sum_probs=130.2
Q ss_pred cCCcccccceecCc--ccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc
Q 005643 164 SDTKSMYKEVVLGG--DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~--e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s 238 (686)
-..+.+|+++++.. .+...++++.. +.....+++|+||||||||+||+++++++ +.+++++++.
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 35568899987443 23333333222 22346789999999999999999998865 7788999887
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 239 EFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 239 ~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
++... +.. .....+|+|||+|.+.. .....+..++..+... ...++|.
T Consensus 80 ~~~~~-----------~~~--~~~~~~liiDdi~~l~~-------~~~~~L~~~~~~~~~~------------~~~~vl~ 127 (227)
T PRK08903 80 SPLLA-----------FDF--DPEAELYAVDDVERLDD-------AQQIALFNLFNRVRAH------------GQGALLV 127 (227)
T ss_pred HhHHH-----------Hhh--cccCCEEEEeChhhcCc-------hHHHHHHHHHHHHHHc------------CCcEEEE
Confidence 75422 111 22356899999998732 1223334444443221 1123444
Q ss_pred ecCC-CC--CCccccccCCcc--ceEEEeCCCCHHHHHHHHHHHhcCC--CccccccHHHHHHhccCCCHHHHHHHHHHH
Q 005643 319 ATNR-PD--ELDLEFVRPGRI--DRRLYIGLPDAKQRVQIFDVHSAGK--QLAEDVNFEELVFRTVGFSGADIRNLVNES 391 (686)
Q Consensus 319 aTN~-p~--~LD~aLlrpgRF--d~~I~v~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~La~~t~G~sgadL~~lv~eA 391 (686)
+++. |. .+.+.+.+ || ...+.+++|+.+++..+++.+.... .+.++ -+..|++..+| +.+++.++++..
T Consensus 128 ~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~-al~~L~~~~~g-n~~~l~~~l~~l 203 (227)
T PRK08903 128 AGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE-VPDYLLTHFRR-DMPSLMALLDAL 203 (227)
T ss_pred eCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHH
Confidence 4443 32 34566776 77 4689999999999999998765443 33332 36778875444 899999999986
Q ss_pred HHHHHHhCCCcccHHHHHHHHH
Q 005643 392 GIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~ 413 (686)
...|... +..||...+.+++.
T Consensus 204 ~~~~~~~-~~~i~~~~~~~~l~ 224 (227)
T PRK08903 204 DRYSLEQ-KRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHh-CCCCCHHHHHHHHh
Confidence 6555444 46799888877664
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.6e-13 Score=156.06 Aligned_cols=210 Identities=19% Similarity=0.250 Sum_probs=148.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe-------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS------- 236 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is------- 236 (686)
+..+.+|+||+|++.+++.|...+.. .+.+.++||+||+|+|||++|+++|+.+++.....+
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 45678999999999888777765442 246789999999999999999999998865321111
Q ss_pred Cc--------------cccch---hhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 237 GA--------------EFTDS---EKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 237 ~s--------------~~~~~---~~~~~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
|. ++.+. ...+...+|.+.+.+... ...|++|||+|.+. ....|.||..
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls----------~~a~naLLKt 155 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS----------TAAFNALLKT 155 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC----------HHHHHHHHHH
Confidence 11 11111 112345677777766532 25799999999984 2357889988
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+..... +++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....++..+...... .+..+..|+.
T Consensus 156 LEePp~~-----------~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 156 LEEPPPH-----------VKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIAR 221 (598)
T ss_pred HHhCCCC-----------eEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8775432 5777777888888888888 88 579999999999998888776654433 2234666777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (686)
.+.| +.+++.+++..+... +...|+.+++...+.
T Consensus 222 ~a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 222 AAEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HcCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 7655 788888888776544 234699998877653
No 108
>PRK08727 hypothetical protein; Validated
Probab=99.52 E-value=9.5e-13 Score=135.34 Aligned_cols=209 Identities=18% Similarity=0.267 Sum_probs=131.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
-.+..+|++.++.++ +.+..+...... .....++|+||+|||||+|++|++.++ |...++++..++
T Consensus 12 ~~~~~~f~~f~~~~~--n~~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 12 YPSDQRFDSYIAAPD--GLLAQLQALAAG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCCcCChhhccCCcH--HHHHHHHHHHhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 355679999987664 223222222111 123569999999999999999997654 667777775553
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 241 ~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
.. .+...++... ...+|+|||+|.+.++ ......+..+++.+... +.-||+|+
T Consensus 81 ~~-------~~~~~~~~l~--~~dlLiIDDi~~l~~~-----~~~~~~lf~l~n~~~~~-------------~~~vI~ts 133 (233)
T PRK08727 81 AG-------RLRDALEALE--GRSLVALDGLESIAGQ-----REDEVALFDFHNRARAA-------------GITLLYTA 133 (233)
T ss_pred hh-------hHHHHHHHHh--cCCEEEEeCcccccCC-----hHHHHHHHHHHHHHHHc-------------CCeEEEEC
Confidence 32 2333444333 3469999999988532 12233444555554321 12344444
Q ss_pred -CCCCCC---ccccccCCcc--ceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHH
Q 005643 321 -NRPDEL---DLEFVRPGRI--DRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGI 393 (686)
Q Consensus 321 -N~p~~L---D~aLlrpgRF--d~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~ 393 (686)
+.|..+ ++.|++ || ...+.+++|+.+++.+|++.++....+. ++..+..|+.++.| +.+.+.++++....
T Consensus 134 ~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~ 210 (233)
T PRK08727 134 RQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDR 210 (233)
T ss_pred CCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 456544 789998 87 4588999999999999999866543332 22346778887664 56666666776554
Q ss_pred HHHHhCCCcccHHHHHHHHHH
Q 005643 394 MSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 394 ~A~r~~~~~It~~dl~~Al~~ 414 (686)
.+...+ ..||...+.+.+..
T Consensus 211 ~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 211 ESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHhC-CCCCHHHHHHHHhh
Confidence 444444 46898888777653
No 109
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=1.8e-13 Score=162.02 Aligned_cols=171 Identities=20% Similarity=0.265 Sum_probs=119.4
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-h------
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E------ 244 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~------ 244 (686)
|..|.+++|+.+.+.+...+.. +......++|+||||+|||++++++|+.++.+|+.++++...+. .
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 4778888888887766643322 11123469999999999999999999999999999987765432 1
Q ss_pred ---hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc----ccccEEEE
Q 005643 245 ---KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS----LRQAVIFI 317 (686)
Q Consensus 245 ---~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~----~~~~ViVI 317 (686)
+....++...+..+....| ||||||+|.+.... .+ ...+.|+..||......-.+.+. .-++|++|
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~-~g-----~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM-RG-----DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc-CC-----CHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1112234444555554444 89999999996432 11 13567888887533222111111 22569999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhc
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
+|+|.. .|+++|++ ||. .|.+..++.++..+|.+.|+.
T Consensus 470 ~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 470 ATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 999987 59999998 994 799999999999999998873
No 110
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=3.8e-13 Score=150.65 Aligned_cols=220 Identities=14% Similarity=0.227 Sum_probs=144.6
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCcccc
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFT 241 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~~~ 241 (686)
+.||++.+..+...........+..+| | ....+++|||++|+|||+|++|+++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNP------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCc------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 478999886665444444444444444 1 234579999999999999999999854 5788999998887
Q ss_pred chhhhHHH----HHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 242 DSEKSGAA----RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 242 ~~~~~~~~----~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
........ .+..+.+.. ..+.+|+|||++.+.++ ......+-.+++.+.... .-+|+
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k-----~~~~e~lf~l~N~~~~~~------------k~iIl 244 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYK-----EKTNEIFFTIFNNFIEND------------KQLFF 244 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCC-----HHHHHHHHHHHHHHHHcC------------CcEEE
Confidence 65322211 122221222 34579999999988532 222334444444443211 12444
Q ss_pred EecCCCC---CCccccccCCccc--eEEEeCCCCHHHHHHHHHHHhcCCCc---cccccHHHHHHhccCCCHHHHHHHHH
Q 005643 318 CATNRPD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQL---AEDVNFEELVFRTVGFSGADIRNLVN 389 (686)
Q Consensus 318 aaTN~p~---~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l---~~dvdl~~La~~t~G~sgadL~~lv~ 389 (686)
++...|. .+++.|.+ ||. ..+.+.+|+.++|.+|++.++....+ .++.-+..|+....| +.+.+.++++
T Consensus 245 tsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~ 321 (450)
T PRK14087 245 SSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVS 321 (450)
T ss_pred ECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHH
Confidence 4444444 35788888 885 47889999999999999988865432 223336778877666 8999999999
Q ss_pred HHHHHHHHhC-CCcccHHHHHHHHHHH
Q 005643 390 ESGIMSVRKG-HSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 390 eA~~~A~r~~-~~~It~~dl~~Al~~~ 415 (686)
.+...+.... ...||.+.+.+++...
T Consensus 322 ~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 322 RLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 8876665542 2569999988887653
No 111
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.52 E-value=5e-13 Score=154.05 Aligned_cols=189 Identities=15% Similarity=0.199 Sum_probs=123.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-------C---CCeEEEeCccccchhh------------------hHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES-------G---LPFVFASGAEFTDSEK------------------SGAARINEMFS 256 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~-------g---~~fi~is~s~~~~~~~------------------~~~~~vr~lF~ 256 (686)
..++|+|+||||||++++.+.+++ + +.+++|+|..+..... .....+..+|.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 345799999999999999997655 2 5578999976543211 11234566666
Q ss_pred HHH--hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC---CCCCccccc
Q 005643 257 IAR--RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR---PDELDLEFV 331 (686)
Q Consensus 257 ~Ak--~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~---p~~LD~aLl 331 (686)
... ....+||+|||||.|..+ .+..+..|+..... . ...|+||+++|. ++.|++.+.
T Consensus 862 ~L~k~~r~v~IIILDEID~L~kK-------~QDVLYnLFR~~~~-s----------~SKLiLIGISNdlDLperLdPRLR 923 (1164)
T PTZ00112 862 QNKKDNRNVSILIIDEIDYLITK-------TQKVLFTLFDWPTK-I----------NSKLVLIAISNTMDLPERLIPRCR 923 (1164)
T ss_pred hhhcccccceEEEeehHhhhCcc-------HHHHHHHHHHHhhc-c----------CCeEEEEEecCchhcchhhhhhhh
Confidence 542 233579999999999642 23445555554321 1 124889999986 567788888
Q ss_pred cCCccce-EEEeCCCCHHHHHHHHHHHhcCCC-ccccccHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhCCCcccHHH
Q 005643 332 RPGRIDR-RLYIGLPDAKQRVQIFDVHSAGKQ-LAEDVNFEELVFRTVGF--SGADIRNLVNESGIMSVRKGHSKIQQQD 407 (686)
Q Consensus 332 rpgRFd~-~I~v~~Pd~~eR~~Il~~~l~~~~-l~~dvdl~~La~~t~G~--sgadL~~lv~eA~~~A~r~~~~~It~~d 407 (686)
+ ||.. .|.|++++.+++.+||+..+.... .-.+..+..+|+..... ..+..-.+|+.|+.. ++...|+.+|
T Consensus 924 S--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi---kegskVT~eH 998 (1164)
T PTZ00112 924 S--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN---KRGQKIVPRD 998 (1164)
T ss_pred h--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh---cCCCccCHHH
Confidence 7 7753 588999999999999998776421 12222355666643322 223333455555543 3445799999
Q ss_pred HHHHHHHHH
Q 005643 408 IVDVLDKQL 416 (686)
Q Consensus 408 l~~Al~~~~ 416 (686)
+.+|+.++.
T Consensus 999 VrkAleeiE 1007 (1164)
T PTZ00112 999 ITEATNQLF 1007 (1164)
T ss_pred HHHHHHHHH
Confidence 999987653
No 112
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.52 E-value=2.1e-13 Score=163.92 Aligned_cols=202 Identities=15% Similarity=0.209 Sum_probs=140.4
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEE
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~i 235 (686)
.+-.++.++|.++ +++.++..|... ...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~---ei~~~~~~l~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDE---EIRRTIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHH---HHHHHHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3457889999984 566666665444 34578999999999999999999875 6778888
Q ss_pred eCccccch---hhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 005643 236 SGAEFTDS---EKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (686)
Q Consensus 236 s~s~~~~~---~~~~~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (686)
+.+.+... .+....+++.+|+.+.. ..|+||||||+|.+.+.+...+ .....+.|...+. +
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~--~~d~~~~Lk~~l~-------------~ 300 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG--AMDAGNMLKPALA-------------R 300 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc--hhHHHHHhchhhh-------------c
Confidence 87776522 35567789999998865 4589999999999975322211 1122233332221 1
Q ss_pred ccEEEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccc-----cccHHHHHHhccCCC-
Q 005643 312 QAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-----DVNFEELVFRTVGFS- 380 (686)
Q Consensus 312 ~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-----dvdl~~La~~t~G~s- 380 (686)
..+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+........ +..+...+..+.+|-
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 2389999998764 47999999 996 589999999999999987654433322 234555566655553
Q ss_pred ----HHHHHHHHHHHHHHHHH
Q 005643 381 ----GADIRNLVNESGIMSVR 397 (686)
Q Consensus 381 ----gadL~~lv~eA~~~A~r 397 (686)
|..--.++.+|+..+..
T Consensus 378 ~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 378 DRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred ccCCchHHHHHHHHHHHHHHh
Confidence 44555777877765533
No 113
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=2.1e-13 Score=160.43 Aligned_cols=173 Identities=19% Similarity=0.234 Sum_probs=120.1
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh------h
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE------K 245 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~------~ 245 (686)
.|+|++++++.|.+.+...+....- ..++..++||+||||||||.+|+++|..++.+|+.++|+++.+.. |
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~---~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGH---EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccC---CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 3789998888877777654321100 012334689999999999999999999999999999999886521 1
Q ss_pred -----hHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 246 -----SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 246 -----~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
.+......+.+..+.+..|||||||||.+.+ ...+.|+..|+...-.....+.....++++|+||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~----------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP----------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH----------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 0111112333444556679999999999953 3678888888753222211222333568999999
Q ss_pred CCC-------------------------CCCccccccCCccceEEEeCCCCHHHHHHHHHHHhc
Q 005643 321 NRP-------------------------DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 321 N~p-------------------------~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
|.- ..+.|.|+. |+|.+|.|++.+.++..+|+...+.
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 932 124567776 9999999999999999999987654
No 114
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.2e-13 Score=146.93 Aligned_cols=210 Identities=19% Similarity=0.277 Sum_probs=140.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcc----
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE---- 239 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~---- 239 (686)
+..+.+|+||+|++.+.+.+...+ ++. +.|.++|||||||+|||++|+++|+..+.+.....+..
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i---~~~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAI---ENN--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHH---HcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 456789999999998766555544 332 45789999999999999999999998765322111111
Q ss_pred ---ccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 240 ---FTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 240 ---~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
+......+...++.+++.+.. ..+.||+|||+|.+.. ..++.|+..++....
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----------~~~~~ll~~le~~~~----------- 137 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----------AAFNAFLKTLEEPPA----------- 137 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----------HHHHHHHHHHhCCCC-----------
Confidence 101111223557777776643 2346999999998842 246778877765322
Q ss_pred cEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHH
Q 005643 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (686)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA 391 (686)
..++|.+|+.+..+.+++.+ |+ ..+.++.|+.++...++...+....+. ++..+..|+..+.| +.+.+.+.++..
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl 213 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRV 213 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 24666677778889999987 77 578999999999988888766554432 23346777777554 666666666655
Q ss_pred HHHHHHhCCCcccHHHHHHHHH
Q 005643 392 GIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~ 413 (686)
...+ +.. |+.+++...+.
T Consensus 214 ~~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 214 VTFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred HHhc---CCC-CCHHHHHHHhC
Confidence 5443 333 88888766553
No 115
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.6e-13 Score=156.44 Aligned_cols=203 Identities=19% Similarity=0.272 Sum_probs=144.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
+..+.+|+||+|++.+++.|...+. . .+.+..+|||||+|+|||++|+++|+.+++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~---~--------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAID---T--------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH---c--------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 3456899999999988877776543 2 2467789999999999999999999987642
Q ss_pred ------------eEEEeCccccchhhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 232 ------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
++.+++.. ..+...++.+.+.++.. ...|++|||+|.+.. ...|.|+..
T Consensus 78 ~c~~i~~g~~~d~~eid~~s-----~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~----------~a~naLLk~ 142 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGAS-----NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST----------NAFNALLKT 142 (576)
T ss_pred HHHHHhcCCCCCeeeeeccC-----ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH----------HHHHHHHHH
Confidence 22222111 12344567776665432 236999999998842 357899999
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+++|.+||.++.|.+.+++ |+ ..+.|..++.++....++..+....+. ++..+..++.
T Consensus 143 LEepp~-----------~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~ 208 (576)
T PRK14965 143 LEEPPP-----------HVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVAR 208 (576)
T ss_pred HHcCCC-----------CeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 987443 36888888889999999998 87 578999999988888887666544432 2334677787
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 411 (686)
.+.| +.+++.+++..+...+ + ..|+.+++...
T Consensus 209 ~a~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 209 KGDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 7665 6777777777655443 2 34888877654
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4.1e-13 Score=151.85 Aligned_cols=203 Identities=20% Similarity=0.257 Sum_probs=144.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
+..+.+|+||+|++.+++.|...+.. .+.|..+|||||||+|||++|+++|+.+..+
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 45678999999999888877776532 2467788999999999999999999987421
Q ss_pred ------------eEEEeCccccchhhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 232 ------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 232 ------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
++.+++++ ..+...++.+...+... ...|++|||+|.+. ...+|.||..
T Consensus 76 ~C~~~~~~~h~dv~eldaas-----~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt----------~~A~NALLK~ 140 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS-----NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT----------KEAFNALLKT 140 (535)
T ss_pred HHHHHhhcCCCeEEEecccc-----ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------HHHHHHHHHH
Confidence 22222111 11234566666554321 23599999999884 2467889999
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+.+|.+|+.+..|.+++++ |+ ..++|.+++.++....++..+...... .+..+..|+.
T Consensus 141 LEEpp~-----------~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 141 LEEPPS-----------YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred HhhcCC-----------ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 887533 25677777888999999998 86 689999999999888887766544332 2334677887
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 411 (686)
.+.| +.+++.+++..+...+ ...||.+++...
T Consensus 207 ~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 207 SGNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 7665 8888888888777554 235777776654
No 117
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4.3e-13 Score=152.65 Aligned_cols=203 Identities=19% Similarity=0.286 Sum_probs=140.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC-------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~------------- 230 (686)
...+.+|+||+|++.+++.|...+. . .+.+.++||+||||+|||++|+++|+.+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~---~--------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL---N--------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4567899999999988776665432 2 245688999999999999999999998753
Q ss_pred -----------CeEEEeCccccchhhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 231 -----------PFVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 231 -----------~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
.++.++++. ..+...++.+...+... ...|++|||+|.+.. ...+.|+..
T Consensus 78 sCr~i~~~~h~DiieIdaas-----~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~----------~A~NaLLKt 142 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS-----NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST----------SAWNALLKT 142 (605)
T ss_pred HHHHHHcCCCCceEEecccc-----ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH----------HHHHHHHHH
Confidence 112222111 12334566666655432 235999999998842 246788888
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHH
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVF 374 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~ 374 (686)
|+.... .+++|++|+.+..|.+.+++ |+ ..+.|.+|+..+....++..+...... ++..+..++.
T Consensus 143 LEEPp~-----------~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~ 208 (605)
T PRK05896 143 LEEPPK-----------HVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIAD 208 (605)
T ss_pred HHhCCC-----------cEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 876433 36778888889999999998 88 479999999999998888766544321 2234667777
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 411 (686)
.+.| +.+++.++++.+...+ +. .|+.+++.+.
T Consensus 209 lS~G-dlR~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 209 LADG-SLRDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred HcCC-cHHHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 7655 6777777777654332 32 3887776653
No 118
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=6.8e-13 Score=149.70 Aligned_cols=209 Identities=20% Similarity=0.296 Sum_probs=141.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC-------CeEEE-
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-------PFVFA- 235 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-------~fi~i- 235 (686)
...+.+|+|++|++.+.+.|+..+. +. +.+..+|||||||+|||++|+.+|+.+++ |+-.+
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~---~~--------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVK---LQ--------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 3456799999999988776665543 22 35667899999999999999999998763 11110
Q ss_pred eC--------ccccch---hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005643 236 SG--------AEFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (686)
Q Consensus 236 s~--------s~~~~~---~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~ 300 (686)
+| .++.+. ...+...++.+.+.+.. ..+.|++|||+|.+.. ...+.|+..++...
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~----------~a~naLLk~LEepp 147 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK----------EAFNALLKTLEEPP 147 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH----------HHHHHHHHHHhcCC
Confidence 11 011111 01223345555555443 2357999999998842 34678888887643
Q ss_pred ccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccc-cccHHHHHHhccCC
Q 005643 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGF 379 (686)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~ 379 (686)
. .+++|.+|+.++.+.+++++ |+ ..+.+.+|+.++...+++..++...+.- +..+..|+..+.|
T Consensus 148 ~-----------~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G- 212 (486)
T PRK14953 148 P-----------RTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG- 212 (486)
T ss_pred C-----------CeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 2 25666667778888889888 77 4799999999999999988776544432 2236677777554
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+.+++.++++.+... +...||.+++.+++
T Consensus 213 ~lr~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 213 GMRDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 677788888776644 23468888887754
No 119
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.50 E-value=2e-13 Score=146.81 Aligned_cols=229 Identities=17% Similarity=0.251 Sum_probs=141.1
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEE--e
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFA--S 236 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-------g~~fi~i--s 236 (686)
....|++|+|++++++.|.-. +.++ ...++||+|+||||||++||++|+-+ +.++-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~---~~~~---------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLT---AIDP---------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHH---Hhcc---------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 356799999999887765432 1112 12479999999999999999999987 3322111 1
Q ss_pred C-ccc---------------cch-hh------hHHHHHHHH-------HHHH--HhcCCeEEEEccchhhhccCCCCChh
Q 005643 237 G-AEF---------------TDS-EK------SGAARINEM-------FSIA--RRNAPAFVFVDEIDAIAGRHARKDPR 284 (686)
Q Consensus 237 ~-s~~---------------~~~-~~------~~~~~vr~l-------F~~A--k~~~P~ILfIDEiDal~~~~~~~~~e 284 (686)
+ .++ ... .. .|...+... |..- ......+|||||++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 1 000 000 00 000001110 1100 011125899999999843
Q ss_pred HHHHHHHHHHHhcCCcc--cCCcccccccccEEEEEecCCCC-CCccccccCCccceEEEeCCCCH-HHHHHHHHHHhcC
Q 005643 285 RRATFEALIAQLDGDKE--RTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLPDA-KQRVQIFDVHSAG 360 (686)
Q Consensus 285 ~~~~l~~LL~~ld~~~~--~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlrpgRFd~~I~v~~Pd~-~eR~~Il~~~l~~ 360 (686)
.+++.|+..|+.... ...+........+++|+|+|..+ .++++++. ||...+.++.|.. ++|.+|++.....
T Consensus 143 --~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~~ 218 (334)
T PRK13407 143 --HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDAY 218 (334)
T ss_pred --HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhcc
Confidence 467788888865431 11111233445689999999755 68999998 9999999998866 9999999864321
Q ss_pred CC----c---------------------------cccc--cHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhCCCcccHH
Q 005643 361 KQ----L---------------------------AEDV--NFEELVFRTVGF-SGADIRNLVNESGIMSVRKGHSKIQQQ 406 (686)
Q Consensus 361 ~~----l---------------------------~~dv--dl~~La~~t~G~-sgadL~~lv~eA~~~A~r~~~~~It~~ 406 (686)
.. . .+++ -+..++..+.-- .-++|. +++.|...|+.+|+..|+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~~ 297 (334)
T PRK13407 219 DADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVGRS 297 (334)
T ss_pred cccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeCHH
Confidence 10 0 0000 022333333322 334555 99999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 005643 407 DIVDVLDKQLLEG 419 (686)
Q Consensus 407 dl~~Al~~~~~~~ 419 (686)
|+..+..-++.++
T Consensus 298 Di~~~~~~vl~hR 310 (334)
T PRK13407 298 HLRSVATMALSHR 310 (334)
T ss_pred HHHHHHHHhhhhh
Confidence 9988887666544
No 120
>PRK06620 hypothetical protein; Validated
Probab=99.50 E-value=1.1e-12 Score=133.23 Aligned_cols=199 Identities=13% Similarity=0.203 Sum_probs=129.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCcc-CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQF-VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~-p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..++.+|++++..+.-......+..+...+ +..+ .+.++||||||||||+|++++++..+..++. .....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~- 79 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN- 79 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc-
Confidence 456779999987775555555554443332 2222 2789999999999999999999987753322 11110
Q ss_pred hhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC
Q 005643 243 SEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (686)
Q Consensus 243 ~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (686)
...+ ....+|+|||||.+- ...+..+++.+.... ..+||+++..
T Consensus 80 ---------~~~~-----~~~d~lliDdi~~~~----------~~~lf~l~N~~~e~g------------~~ilits~~~ 123 (214)
T PRK06620 80 ---------EEIL-----EKYNAFIIEDIENWQ----------EPALLHIFNIINEKQ------------KYLLLTSSDK 123 (214)
T ss_pred ---------hhHH-----hcCCEEEEeccccch----------HHHHHHHHHHHHhcC------------CEEEEEcCCC
Confidence 0111 123689999999541 123445555543321 2577777766
Q ss_pred CCC--CccccccCCccce--EEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 323 PDE--LDLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 323 p~~--LD~aLlrpgRFd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
|.. + ++|++ |+.. .+.+..|+.+.+..+++.++....+. ++.-++.|+.+..+ +.+.+.++++.....+..
T Consensus 124 p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 199 (214)
T PRK06620 124 SRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI 199 (214)
T ss_pred ccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 654 5 78888 8853 79999999999999998777643332 22236778877655 788888888876544444
Q ss_pred hCCCcccHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVL 412 (686)
Q Consensus 398 ~~~~~It~~dl~~Al 412 (686)
.+ ..||...+.+++
T Consensus 200 ~~-~~it~~~~~~~l 213 (214)
T PRK06620 200 SK-RKITISLVKEVL 213 (214)
T ss_pred cC-CCCCHHHHHHHh
Confidence 43 568888777654
No 121
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=8.9e-13 Score=151.02 Aligned_cols=209 Identities=17% Similarity=0.237 Sum_probs=143.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC-------eEEE-
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FVFA- 235 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------fi~i- 235 (686)
+..+.+|+||+|++.+++.|+..+. +. +.+..+|||||||+|||++|+++|+.++.+ +-.+
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~---~~--------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIE---SN--------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH---cC--------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 4567899999999988887666553 22 456789999999999999999999987642 1110
Q ss_pred eC--------ccccchh---hhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005643 236 SG--------AEFTDSE---KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (686)
Q Consensus 236 s~--------s~~~~~~---~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~ 300 (686)
+| .++.... ..+...++.+.+.+.. ....|++|||+|.+. ...+|.||..++...
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls----------~~a~naLLK~LEepp 147 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS----------NSAFNALLKTIEEPP 147 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC----------HHHHHHHHHhhccCC
Confidence 00 0111111 1223445555544332 345799999999884 236788988887643
Q ss_pred ccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCC
Q 005643 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGF 379 (686)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~ 379 (686)
. .+++|.+|+.+..+.++|++ |+ ..++|.+++.++..++++..+....+. ++..+..|+..+.|
T Consensus 148 ~-----------~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 148 P-----------YIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred C-----------CEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 2 36777888888999999998 88 478999999999998888776544332 23346677777665
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+.+++.+++..+...+ ...|+.+++.+++
T Consensus 213 dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 213 SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 7888888887765443 2458888777654
No 122
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.49 E-value=4.6e-13 Score=158.75 Aligned_cols=173 Identities=18% Similarity=0.200 Sum_probs=121.2
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhhCCccCc-eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh-----
Q 005643 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVR-GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE----- 244 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~-gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~----- 244 (686)
+.|+|++++++.+...+...+... . .-..|. .+||+||||||||++|+++|..++.+++.++++++.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~--~--~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGL--G--NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCC--C--CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 357888887777766655432210 0 012244 478999999999999999999999999999999876521
Q ss_pred ------hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 245 ------KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 245 ------~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
..+......+.+..+.+..+||||||+|.+.+ ...+.|+..||...-..+..+.....++++|+
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~----------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP----------DIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH----------HHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 01222233455555667779999999998842 36788888887643322222223345688999
Q ss_pred ecCCCC-------------------------CCccccccCCccceEEEeCCCCHHHHHHHHHHHhc
Q 005643 319 ATNRPD-------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 319 aTN~p~-------------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
|||... .+.|.|+. |||.+|.|.+.+.++..+|++..+.
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 998742 24566665 9999999999999999999987764
No 123
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.49 E-value=1.7e-12 Score=136.13 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=77.4
Q ss_pred EEEEecCC------------CCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCH
Q 005643 315 IFICATNR------------PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSG 381 (686)
Q Consensus 315 iVIaaTN~------------p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sg 381 (686)
++|.|||+ |.-++..|+. |+ ..|...+++.++.++|++..+....+. .+..++.|+.....-|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 67777887 5567777777 77 578888999999999999887755543 23347888888777777
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 382 ADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 382 adL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
+---+|+.-|.+.|.++|...|..+|+++|-+-
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 777888888999999999999999999988653
No 124
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=6.4e-13 Score=147.01 Aligned_cols=213 Identities=17% Similarity=0.232 Sum_probs=142.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeE----------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV---------- 233 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi---------- 233 (686)
...+.+|++|+|++.+++.|+..+. + .+.|.++||+||||+|||++|+++|+++.+.-.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~---~--------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR---M--------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH---h--------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 4567899999999988887766544 2 246778999999999999999999999866210
Q ss_pred EEeCcc--------------ccch---hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHH
Q 005643 234 FASGAE--------------FTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292 (686)
Q Consensus 234 ~is~s~--------------~~~~---~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~L 292 (686)
.-.|.. +... ...+...++.+.+.+.. ....|+||||+|.+.. ...+.|
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------~~~~~L 147 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------AAFNAF 147 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------HHHHHH
Confidence 011111 1111 11123456666555532 2236999999999842 246778
Q ss_pred HHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCc-cccccHHH
Q 005643 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL-AEDVNFEE 371 (686)
Q Consensus 293 L~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l-~~dvdl~~ 371 (686)
+..++..... +++|.+|+.+..+-+++.+ |+. .+++.+++.++..+.++..+..... -++..+..
T Consensus 148 Lk~LEep~~~-----------t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~ 213 (397)
T PRK14955 148 LKTLEEPPPH-----------AIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQL 213 (397)
T ss_pred HHHHhcCCCC-----------eEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 8887754332 4666666777888888887 774 7899999998888888766654332 22334677
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHH-hCCCcccHHHHHHHH
Q 005643 372 LVFRTVGFSGADIRNLVNESGIMSVR-KGHSKIQQQDIVDVL 412 (686)
Q Consensus 372 La~~t~G~sgadL~~lv~eA~~~A~r-~~~~~It~~dl~~Al 412 (686)
|+..+.| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 214 l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 214 IGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 7777655 777777777776655532 224579998887766
No 125
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=8.5e-13 Score=145.22 Aligned_cols=186 Identities=24% Similarity=0.300 Sum_probs=118.5
Q ss_pred cccc-eecCcccHHHHHHHHH-HhCCchh----hhhhCC-ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 169 MYKE-VVLGGDVWDLLDELMI-YMGNPMQ----YYERGV-QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 169 ~f~d-vvG~~e~k~~L~elv~-~l~~p~~----~~~~g~-~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.+++ |+|++++++.+...+. ..+.-.. ....+. ....++||+||||||||++|+++|..++.||..++++.+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 4443 5899999988876552 1111000 000011 1246899999999999999999999999999999998876
Q ss_pred ch--hhhH-HHHHHHHHHHH----HhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCccc--CCcccc
Q 005643 242 DS--EKSG-AARINEMFSIA----RRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKER--TGIDRF 308 (686)
Q Consensus 242 ~~--~~~~-~~~vr~lF~~A----k~~~P~ILfIDEiDal~~~~~~~----~~e~~~~l~~LL~~ld~~~~~--~~~~~~ 308 (686)
.. .+.. ...+..++..+ ....++||||||+|.+..++.+. +.....+++.||..|++.... ....+.
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~ 233 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK 233 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcc
Confidence 53 2221 22334443322 23457899999999997643221 122235778888888775432 112233
Q ss_pred cccccEEEEEecCCCC--------------------------------------------------CCccccccCCccce
Q 005643 309 SLRQAVIFICATNRPD--------------------------------------------------ELDLEFVRPGRIDR 338 (686)
Q Consensus 309 ~~~~~ViVIaaTN~p~--------------------------------------------------~LD~aLlrpgRFd~ 338 (686)
....+.++|.|+|-.. .+.|+|+ ||+|.
T Consensus 234 ~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~ 311 (413)
T TIGR00382 234 HPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPV 311 (413)
T ss_pred ccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCe
Confidence 3445677777777510 0224444 59999
Q ss_pred EEEeCCCCHHHHHHHHHH
Q 005643 339 RLYIGLPDAKQRVQIFDV 356 (686)
Q Consensus 339 ~I~v~~Pd~~eR~~Il~~ 356 (686)
.+.|.+.+.+...+|+..
T Consensus 312 Iv~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 312 IATLEKLDEEALIAILTK 329 (413)
T ss_pred EeecCCCCHHHHHHHHHH
Confidence 999999999999999865
No 126
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.9e-12 Score=145.16 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=138.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
...+.+|+||+|++.+++.|...+. .. +.|..+|||||||+|||++|+++|+.+..+
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~---~~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALR---FN--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH---cC--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 3456899999999988776665543 22 467789999999999999999999987542
Q ss_pred -------------eEEEeCccccchhhhHHHHHHHHHHHHH----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005643 232 -------------FVFASGAEFTDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (686)
Q Consensus 232 -------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~ 294 (686)
++.+++.. ..+...++.+-+... .....|++|||+|.+.. ...+.|+.
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~-----~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----------~~~n~LLk 143 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGAS-----HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----------EAFNSLLK 143 (451)
T ss_pred HHHHHHhcCCCCceEEeeccc-----cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH----------HHHHHHHH
Confidence 22222211 112233443333222 23468999999999842 24678888
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHH
Q 005643 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELV 373 (686)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La 373 (686)
.|+.... .+++|++||.+..|.+++++ |+ ..+++..++.++....++..+...... ++..+..|+
T Consensus 144 ~lEep~~-----------~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 144 TLEEPPQ-----------HVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred HhhcCCC-----------CceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8877432 25777788888999999998 88 579999999999888888766544332 233467788
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005643 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 374 ~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (686)
..+.| +.+++.++++..... .+ ..|+.+++.+++.
T Consensus 210 ~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~~ 244 (451)
T PRK06305 210 RAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKALG 244 (451)
T ss_pred HHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHHC
Confidence 77654 556666666554433 23 3488888776653
No 127
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.47 E-value=1e-12 Score=141.61 Aligned_cols=231 Identities=16% Similarity=0.196 Sum_probs=149.5
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC-------CCeEEEeC
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-------LPFVFASG 237 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g-------~~fi~is~ 237 (686)
.+...|++|+|++++|..|.- .+.+| ...|+||.|++|||||++||++++.+. .||. ...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~---~~~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALIL---NVIDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHH---hccCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 345689999999987776543 44555 346899999999999999999977542 2332 000
Q ss_pred c--c------------------------ccch-hhhHHHH------HHHHHHHHH---------hcCCeEEEEccchhhh
Q 005643 238 A--E------------------------FTDS-EKSGAAR------INEMFSIAR---------RNAPAFVFVDEIDAIA 275 (686)
Q Consensus 238 s--~------------------------~~~~-~~~~~~~------vr~lF~~Ak---------~~~P~ILfIDEiDal~ 275 (686)
. + +... .+....+ +...|.... +....+|||||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 0 0 0000 0011111 122222221 1123699999999995
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCccc---CCcccccccccEEEEEecCCCC-CCccccccCCccceEEEeCCCC-HHHH
Q 005643 276 GRHARKDPRRRATFEALIAQLDGDKER---TGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLPD-AKQR 350 (686)
Q Consensus 276 ~~~~~~~~e~~~~l~~LL~~ld~~~~~---~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlrpgRFd~~I~v~~Pd-~~eR 350 (686)
. .+++.|+..|+..... .+ .....+..+++|+|.|..+ .+.++++. ||..++.+..|+ .+.+
T Consensus 158 ~----------~~Q~~LLeam~e~~~~ier~G-~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 158 D----------HLVDILLDSAASGWNTVEREG-ISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred H----------HHHHHHHHHHHhCCeEEeeCC-eeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 3 3566788877642211 11 1123345689999888765 69999999 999999999997 5999
Q ss_pred HHHHHHHhcCC--C-----------------------------ccccc--cHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 351 VQIFDVHSAGK--Q-----------------------------LAEDV--NFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 351 ~~Il~~~l~~~--~-----------------------------l~~dv--dl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
.+|++...... + +.+.+ -+..++..+.--|++---.+++.|...|+-
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal 304 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAF 304 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHH
Confidence 99998643211 0 00000 023444444444677777888889999999
Q ss_pred hCCCcccHHHHHHHHHHHHHhccc
Q 005643 398 KGHSKIQQQDIVDVLDKQLLEGMG 421 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~~~~g 421 (686)
+|+..|+.+|+..+..-++.++..
T Consensus 305 ~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 305 EGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999988877653
No 128
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.47 E-value=1.1e-12 Score=140.01 Aligned_cols=203 Identities=17% Similarity=0.226 Sum_probs=131.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEEeCc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g-----~~fi~is~s 238 (686)
+..+.+|+|++|++++++.+...+. .. . ..+++|+||||||||++++++++++. .+++.++++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~---~~--------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVK---EK--------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHh---CC--------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 4566899999999987777666543 22 1 22589999999999999999999873 234555444
Q ss_pred cccchhhhHHHHHHHHHH-HHHh-----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 239 EFTDSEKSGAARINEMFS-IARR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 239 ~~~~~~~~~~~~vr~lF~-~Ak~-----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
+-.. ...++..+. .+.. ..+.+|+|||+|.+... ..+.|+..++.....
T Consensus 78 ~~~~-----~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~----------~~~~L~~~le~~~~~---------- 132 (319)
T PRK00440 78 DERG-----IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD----------AQQALRRTMEMYSQN---------- 132 (319)
T ss_pred cccc-----hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH----------HHHHHHHHHhcCCCC----------
Confidence 3221 111222221 1211 23569999999988421 234566656543322
Q ss_pred cEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHH
Q 005643 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (686)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA 391 (686)
..+|.++|.+..+.+++.+ |+. .+++++|+.++...+++.++...... .+..+..++..+.| +.+.+.+.++.+
T Consensus 133 -~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 133 -TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred -CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 3566677777888788887 774 58999999999999999887654432 23357788877654 455555555443
Q ss_pred HHHHHHhCCCcccHHHHHHHHH
Q 005643 392 GIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~ 413 (686)
+.. ...||.+++..++.
T Consensus 208 ~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 208 AAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHc-----CCCCCHHHHHHHhC
Confidence 321 35699999877764
No 129
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.46 E-value=3.8e-12 Score=138.85 Aligned_cols=223 Identities=19% Similarity=0.255 Sum_probs=153.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGA 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s 238 (686)
-.++.||++.+..+.-.........+..+|. .....++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 4577899999988876666666666666662 245569999999999999999998876 3358888888
Q ss_pred cccchh-hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 239 EFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 239 ~~~~~~-~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
.|.... ......-.+-|+.-- +-.+++||+|+.+.++... ..+.-.++|.+... . .-+|+
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-qeefFh~FN~l~~~----~------------kqIvl 213 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-QEEFFHTFNALLEN----G------------KQIVL 213 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH-HHHHHHHHHHHHhc----C------------CEEEE
Confidence 887653 222222223343333 3358999999999754211 22333334443321 1 12666
Q ss_pred EecCCCCC---CccccccCCccce--EEEeCCCCHHHHHHHHHHHhcCCCcccc-ccHHHHHHhccCCCHHHHHHHHHHH
Q 005643 318 CATNRPDE---LDLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVFRTVGFSGADIRNLVNES 391 (686)
Q Consensus 318 aaTN~p~~---LD~aLlrpgRFd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~~t~G~sgadL~~lv~eA 391 (686)
.+...|.. +.+.|.+ ||.. .+.+.+||.+.|.+||+.......+.-+ .-+..++.+.. -+.++|..+++..
T Consensus 214 tsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l 290 (408)
T COG0593 214 TSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRL 290 (408)
T ss_pred EcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHH
Confidence 66666765 4578888 9965 7788999999999999986654444322 22566666644 4789999999988
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 392 GIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
...|...++ .||.+.+.+++....
T Consensus 291 ~~~a~~~~~-~iTi~~v~e~L~~~~ 314 (408)
T COG0593 291 DAFALFTKR-AITIDLVKEILKDLL 314 (408)
T ss_pred HHHHHhcCc-cCcHHHHHHHHHHhh
Confidence 888877665 799999999998765
No 130
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.46 E-value=1.6e-12 Score=132.36 Aligned_cols=201 Identities=20% Similarity=0.291 Sum_probs=122.3
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCccc
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEF 240 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~~ 240 (686)
++.||++.+-.++-+..+..+.....++. .....++||||+|+|||+|.+|+++++ +..++++++.+|
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 56799999766655555555555555552 123458999999999999999998864 677999999988
Q ss_pred cchhhhHH--HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 241 TDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 241 ~~~~~~~~--~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
........ ..+..+.+..+ ...+|+||++|.+.++ ......+..+++.+... . .-+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~-----~~~q~~lf~l~n~~~~~---~---------k~li~t 136 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK-----QRTQEELFHLFNRLIES---G---------KQLILT 136 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-----HHHHHHHHHHHHHHHHT---T---------SEEEEE
T ss_pred HHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-----hHHHHHHHHHHHHHHhh---C---------CeEEEE
Confidence 76532221 11223222222 3469999999999632 22233444444444321 1 135666
Q ss_pred ecCCCCC---CccccccCCccce--EEEeCCCCHHHHHHHHHHHhcCCCcccccc-HHHHHHhccCCCHHHHHHHHHHHH
Q 005643 319 ATNRPDE---LDLEFVRPGRIDR--RLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGFSGADIRNLVNESG 392 (686)
Q Consensus 319 aTN~p~~---LD~aLlrpgRFd~--~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~sgadL~~lv~eA~ 392 (686)
+...|.. +++.|.+ ||.. .+.+..|+.+.|.+|++..+....+.-+.+ +..|+++.. -+.++|..+++...
T Consensus 137 s~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 137 SDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLD 213 (219)
T ss_dssp ESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred eCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHH
Confidence 6566664 4677777 8854 899999999999999998776554442222 455666644 47888888888766
Q ss_pred HHH
Q 005643 393 IMS 395 (686)
Q Consensus 393 ~~A 395 (686)
.++
T Consensus 214 ~~~ 216 (219)
T PF00308_consen 214 AYA 216 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 131
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.46 E-value=2e-12 Score=140.82 Aligned_cols=181 Identities=22% Similarity=0.312 Sum_probs=127.3
Q ss_pred ceecCcccHHHHHHHHHH-hCCchhhhhh-CCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch--hh-h
Q 005643 172 EVVLGGDVWDLLDELMIY-MGNPMQYYER-GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EK-S 246 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~-l~~p~~~~~~-g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~--~~-~ 246 (686)
-|+|++++|+.+...+.. ++.......+ .-..|+++||+||||||||++|+++|..++.||+.+++..+.+. .+ .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 378999998887655432 1111100111 12357999999999999999999999999999999999888653 23 3
Q ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Q 005643 247 GAARINEMFSIAR------------------------------------------------------------------- 259 (686)
Q Consensus 247 ~~~~vr~lF~~Ak------------------------------------------------------------------- 259 (686)
....++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 4455666655540
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 005643 260 ------------------------------------------------------------------------RNAPAFVF 267 (686)
Q Consensus 260 ------------------------------------------------------------------------~~~P~ILf 267 (686)
.....|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01335999
Q ss_pred EccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC----CCCCCccccccCCccceEEE
Q 005643 268 VDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN----RPDELDLEFVRPGRIDRRLY 341 (686)
Q Consensus 268 IDEiDal~~~~~--~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN----~p~~LD~aLlrpgRFd~~I~ 341 (686)
|||||.++.+.. +.+.....+.+.||..++|..-+... ......+|++||+.. .|..|=|.|. |||...+.
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~-~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 329 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY-GMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVE 329 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecc-eeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 999999986542 33445566888999999986544321 123346789998864 3666667776 59999999
Q ss_pred eCCCCHHHHHHHHH
Q 005643 342 IGLPDAKQRVQIFD 355 (686)
Q Consensus 342 v~~Pd~~eR~~Il~ 355 (686)
+..++.++...||.
T Consensus 330 L~~L~~edL~rILt 343 (441)
T TIGR00390 330 LQALTTDDFERILT 343 (441)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999999884
No 132
>PRK05642 DNA replication initiation factor; Validated
Probab=99.46 E-value=7.3e-12 Score=128.86 Aligned_cols=212 Identities=16% Similarity=0.199 Sum_probs=132.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
-.+..||++.+.... ...+..+..+.... +......++||||+|||||+|++++++++ +..+++++..++
T Consensus 12 ~~~~~tfdnF~~~~~-~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 12 LRDDATFANYYPGAN-AAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CCCcccccccCcCCh-HHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 356678999984432 22222222221211 11134679999999999999999998754 678888888777
Q ss_pred cchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 241 TDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 241 ~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
.... ..+.+..+.. .+|+|||++.+.++ ......+-.+++.+... ...+||+++
T Consensus 85 ~~~~-------~~~~~~~~~~--d~LiiDDi~~~~~~-----~~~~~~Lf~l~n~~~~~------------g~~ilits~ 138 (234)
T PRK05642 85 LDRG-------PELLDNLEQY--ELVCLDDLDVIAGK-----ADWEEALFHLFNRLRDS------------GRRLLLAAS 138 (234)
T ss_pred Hhhh-------HHHHHhhhhC--CEEEEechhhhcCC-----hHHHHHHHHHHHHHHhc------------CCEEEEeCC
Confidence 6431 1222223322 58999999988532 22233344455443221 124677666
Q ss_pred CCCCC---CccccccCCccc--eEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005643 321 NRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (686)
Q Consensus 321 N~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~ 394 (686)
..|.. ..+.|++ ||. ..+.+..|+.++|.++++..+....+. ++.-+..|+++..+ +.+.+.++++.-...
T Consensus 139 ~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~ 215 (234)
T PRK05642 139 KSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQA 215 (234)
T ss_pred CCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 55543 3688888 884 577889999999999999555433232 22336777777655 888999998877654
Q ss_pred HHHhCCCcccHHHHHHHH
Q 005643 395 SVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 395 A~r~~~~~It~~dl~~Al 412 (686)
+..+ +..||..-+++++
T Consensus 216 ~l~~-~~~it~~~~~~~L 232 (234)
T PRK05642 216 SLQA-QRKLTIPFLKETL 232 (234)
T ss_pred HHHc-CCcCCHHHHHHHh
Confidence 4443 3568887766654
No 133
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.4e-12 Score=148.99 Aligned_cols=207 Identities=21% Similarity=0.279 Sum_probs=140.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE----EeCc-
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF----ASGA- 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~----is~s- 238 (686)
+..+.+|++++|+++++..|...+..- +.+.++||+||||||||++|+++|+.+++.... -.|.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 455689999999998888877766531 245689999999999999999999998652110 0111
Q ss_pred -------------cccch---hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005643 239 -------------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (686)
Q Consensus 239 -------------~~~~~---~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~ 298 (686)
++.+. ...+...++.+.+.+.. ....|++|||+|.+. ....|.||..|+.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt----------~~a~naLLK~LEe 147 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS----------TAAFNALLKTLEE 147 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC----------HHHHHHHHHHHhc
Confidence 11111 12345567888776653 234699999999984 2367889999886
Q ss_pred CcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhcc
Q 005643 299 DKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTV 377 (686)
Q Consensus 299 ~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~ 377 (686)
... .+++|++|+.++.+-+.|++ |+ ..+.|..++.++....+...+...... .+..+..++..+.
T Consensus 148 Pp~-----------~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~ 213 (620)
T PRK14948 148 PPP-----------RVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred CCc-----------CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 432 36777788888889899988 88 578899998888777776655443222 2233677777766
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005643 378 GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 378 G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 411 (686)
| +.+++.++++..... . ..|+.+++.+.
T Consensus 214 G-~lr~A~~lLeklsL~---~--~~It~e~V~~l 241 (620)
T PRK14948 214 G-GLRDAESLLDQLSLL---P--GPITPEAVWDL 241 (620)
T ss_pred C-CHHHHHHHHHHHHhc---c--CCCCHHHHHHH
Confidence 5 556666766654433 1 24777666543
No 134
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.2e-12 Score=146.91 Aligned_cols=209 Identities=20% Similarity=0.236 Sum_probs=139.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE---EeCc--
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF---ASGA-- 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~---is~s-- 238 (686)
+..+.+|+||+|++.+++.|...+.. . +.+..+||+||||+|||++|+++|+.+++..-. ..|.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~---~--------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE---G--------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh---C--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 45678999999999988877665542 1 356678999999999999999999987642210 0010
Q ss_pred ------------cccch---hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005643 239 ------------EFTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (686)
Q Consensus 239 ------------~~~~~---~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~ 299 (686)
++.+. ...+...++.+.+.+.. ....||||||+|.+.. ..++.|+..|+..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~----------~a~naLLk~LEep 147 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST----------AAFNALLKTLEEP 147 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH----------HHHHHHHHHHhcC
Confidence 11110 01123335555443332 2346999999998842 3577888888774
Q ss_pred cccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccC
Q 005643 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVG 378 (686)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G 378 (686)
.. .+++|.+|+.++.+.+.+++ |+ ..+.|..++..+...+++..+....+. ++..+..|+..+.|
T Consensus 148 p~-----------~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 148 PP-----------HAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred CC-----------CeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 33 25666677777888888887 77 468999999999988888766544332 22346777777665
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 379 ~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+.+++.+.++....+ +...|+.+++...+
T Consensus 214 -dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 214 -SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred -CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 777777777765432 23468888876644
No 135
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.8e-12 Score=145.97 Aligned_cols=213 Identities=17% Similarity=0.245 Sum_probs=142.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE---------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF--------- 234 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~--------- 234 (686)
...+.+|++|+|++.+++.|+..+. + .+.+.++||+||||||||++|+++|+.+++.--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~---~--------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR---M--------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH---c--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 4567899999999988877666432 2 2567789999999999999999999998762100
Q ss_pred -EeCcc--------------ccch---hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHH
Q 005643 235 -ASGAE--------------FTDS---EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292 (686)
Q Consensus 235 -is~s~--------------~~~~---~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~L 292 (686)
-.|.. +... ...+...++.+.+.+.. ....|++|||+|.+.. ...|.|
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~----------~a~naL 147 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST----------AAFNAF 147 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------HHHHHH
Confidence 01111 1111 11123456666555532 2346999999999842 346889
Q ss_pred HHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCc-cccccHHH
Q 005643 293 IAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL-AEDVNFEE 371 (686)
Q Consensus 293 L~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l-~~dvdl~~ 371 (686)
+..|+..... +++|.+|+.+..|-+.+++ |. ..++|..++.++....++..+..... .++..+..
T Consensus 148 LK~LEePp~~-----------tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~ 213 (620)
T PRK14954 148 LKTLEEPPPH-----------AIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQL 213 (620)
T ss_pred HHHHhCCCCC-----------eEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9988875433 4666666777888888888 77 68999999999988888766554332 22334677
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHH-hCCCcccHHHHHHHH
Q 005643 372 LVFRTVGFSGADIRNLVNESGIMSVR-KGHSKIQQQDIVDVL 412 (686)
Q Consensus 372 La~~t~G~sgadL~~lv~eA~~~A~r-~~~~~It~~dl~~Al 412 (686)
|+..+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 214 La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 214 IARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 7877655 666677776665555421 124568888887665
No 136
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.43 E-value=1.3e-12 Score=146.14 Aligned_cols=207 Identities=20% Similarity=0.271 Sum_probs=155.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC-------eEE--
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FVF-- 234 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------fi~-- 234 (686)
+..+.+|+||+|++.+...|...+..= +...+.||+||.|||||++||.+|+.+++. +..
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 456789999999999888888776552 355689999999999999999999988764 111
Q ss_pred ----EeC---ccccchh---hhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc
Q 005643 235 ----ASG---AEFTDSE---KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK 300 (686)
Q Consensus 235 ----is~---s~~~~~~---~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~ 300 (686)
++. .++.+.. ..+.+.+|.+-+.+.. ..+.|.+|||++.+. .+..|.||..++...
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS----------~~afNALLKTLEEPP 147 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS----------KQAFNALLKTLEEPP 147 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh----------HHHHHHHhcccccCc
Confidence 111 2222221 1234567887777653 335699999999984 357899999998744
Q ss_pred ccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcccccc-HHHHHHhccCC
Q 005643 301 ERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGF 379 (686)
Q Consensus 301 ~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~ 379 (686)
..|++|.||..++.+++.+++ |+ .++.|..-+.++....|...+.+..+..+.+ +..+|+...|
T Consensus 148 -----------~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G- 212 (515)
T COG2812 148 -----------SHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG- 212 (515)
T ss_pred -----------cCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-
Confidence 458999999999999999999 88 5788999999999999998887777664443 6677777666
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Q 005643 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~ 410 (686)
|.+|..+++..|..... ..|+.+++.+
T Consensus 213 s~RDalslLDq~i~~~~----~~It~~~v~~ 239 (515)
T COG2812 213 SLRDALSLLDQAIAFGE----GEITLESVRD 239 (515)
T ss_pred ChhhHHHHHHHHHHccC----CcccHHHHHH
Confidence 89999999998876542 4466665544
No 137
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.43 E-value=4.8e-12 Score=128.78 Aligned_cols=192 Identities=22% Similarity=0.304 Sum_probs=131.3
Q ss_pred CCcccccceecCcccHHHHHHHH-HHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELM-IYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv-~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
...+.+++++|.+..|+.|.+-. .|+.. .+..++||||++|||||+++|++..+. |..++.++..++
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 44689999999998888665543 33333 368899999999999999999998865 677888776665
Q ss_pred cchhhhHHHHHHHHHHHHH-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 241 TDSEKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 241 ~~~~~~~~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
.. +..+++..+ ...+-|||+|++- + . +.+.....|-..|+|.... .+++|++.||
T Consensus 92 ~~--------l~~l~~~l~~~~~kFIlf~DDLs-F-e-------~~d~~yk~LKs~LeGgle~-------~P~NvliyAT 147 (249)
T PF05673_consen 92 GD--------LPELLDLLRDRPYKFILFCDDLS-F-E-------EGDTEYKALKSVLEGGLEA-------RPDNVLIYAT 147 (249)
T ss_pred cc--------HHHHHHHHhcCCCCEEEEecCCC-C-C-------CCcHHHHHHHHHhcCcccc-------CCCcEEEEEe
Confidence 54 445555554 3446799999864 2 1 1233456777778876543 3567999999
Q ss_pred cCCCCCCccccc----------c-----------CCccceEEEeCCCCHHHHHHHHHHHhcCCCcccc-ccH----HHHH
Q 005643 320 TNRPDELDLEFV----------R-----------PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNF----EELV 373 (686)
Q Consensus 320 TN~p~~LD~aLl----------r-----------pgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl----~~La 373 (686)
+|+-..++..+. . ..||...|.|..|+.++-.+|++.++....+.-+ .++ ...|
T Consensus 148 SNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa 227 (249)
T PF05673_consen 148 SNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWA 227 (249)
T ss_pred cchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999543332111 0 1489999999999999999999999865544332 122 2334
Q ss_pred HhccCCCHHHHHHHHH
Q 005643 374 FRTVGFSGADIRNLVN 389 (686)
Q Consensus 374 ~~t~G~sgadL~~lv~ 389 (686)
....|.||+--.+.++
T Consensus 228 ~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 228 LRRGGRSGRTARQFID 243 (249)
T ss_pred HHcCCCCHHHHHHHHH
Confidence 4455566665555544
No 138
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.6e-12 Score=137.46 Aligned_cols=190 Identities=16% Similarity=0.289 Sum_probs=133.3
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCC-----eEEEeCccccchhhhH-----------------HHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP-----FVFASGAEFTDSEKSG-----------------AARINEMFSIARR 260 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~-----fi~is~s~~~~~~~~~-----------------~~~vr~lF~~Ak~ 260 (686)
.|.++++|||||||||.+++.+++++.-+ +++++|.......... ......+++....
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK 120 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh
Confidence 56679999999999999999999887443 8999998876543221 1123333333333
Q ss_pred -cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC---CCccccccCCcc
Q 005643 261 -NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRI 336 (686)
Q Consensus 261 -~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRF 336 (686)
....||+|||+|.|..+.. ..+..|+...... ...|.+|+.+|..+ .+|+.+.+ +|
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~-----------~~~v~vi~i~n~~~~~~~ld~rv~s--~l 180 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGEN-----------KVKVSIIAVSNDDKFLDYLDPRVKS--SL 180 (366)
T ss_pred cCCeEEEEEcchhhhccccc-------hHHHHHHhhcccc-----------ceeEEEEEEeccHHHHHHhhhhhhh--cc
Confidence 4567999999999975421 4566666655443 22488999998864 68888887 55
Q ss_pred -ceEEEeCCCCHHHHHHHHHHHhcCC----CccccccHHHH---HHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005643 337 -DRRLYIGLPDAKQRVQIFDVHSAGK----QLAEDVNFEEL---VFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (686)
Q Consensus 337 -d~~I~v~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~L---a~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 408 (686)
...|.|++.+.+|...|++...... .+.+++ +..+ +....| +.+-.-.+|+.|+..|.+++...++.+++
T Consensus 181 ~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v 258 (366)
T COG1474 181 GPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHV 258 (366)
T ss_pred CcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHH
Confidence 3469999999999999998765422 222221 2223 333333 45556688999999999999999999999
Q ss_pred HHHHHH
Q 005643 409 VDVLDK 414 (686)
Q Consensus 409 ~~Al~~ 414 (686)
.+|.+.
T Consensus 259 ~~a~~~ 264 (366)
T COG1474 259 REAQEE 264 (366)
T ss_pred HHHHHH
Confidence 999544
No 139
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.42 E-value=6.5e-13 Score=144.69 Aligned_cols=181 Identities=24% Similarity=0.318 Sum_probs=128.5
Q ss_pred ceecCcccHHHHHHHHHH-hCCchhhhhhC-CccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch--hh-h
Q 005643 172 EVVLGGDVWDLLDELMIY-MGNPMQYYERG-VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EK-S 246 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~-l~~p~~~~~~g-~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~--~~-~ 246 (686)
.|+|++++|+.+...+.. ++......... -..|+++||+||||||||++|+++|+.++.||+.++++.|.+. .+ .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 388999999888765521 11110000011 1136899999999999999999999999999999999988874 23 3
Q ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Q 005643 247 GAARINEMFSIAR------------------------------------------------------------------- 259 (686)
Q Consensus 247 ~~~~vr~lF~~Ak------------------------------------------------------------------- 259 (686)
....++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3566666666661
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 005643 260 -----------------------------------------------------------------------RNAPAFVFV 268 (686)
Q Consensus 260 -----------------------------------------------------------------------~~~P~ILfI 268 (686)
...-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012359999
Q ss_pred ccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC----CCCCCccccccCCccceEEEe
Q 005643 269 DEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN----RPDELDLEFVRPGRIDRRLYI 342 (686)
Q Consensus 269 DEiDal~~~~~--~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN----~p~~LD~aLlrpgRFd~~I~v 342 (686)
||||.|+.+.. +.+.....+.+.||..++|..-+... ......+|++||+-. .|..|-|.|.- ||...+.+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~-~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 332 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKY-GMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVEL 332 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecc-eeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 99999986542 23445566888999999986544321 123345689998763 46667778874 99999999
Q ss_pred CCCCHHHHHHHHH
Q 005643 343 GLPDAKQRVQIFD 355 (686)
Q Consensus 343 ~~Pd~~eR~~Il~ 355 (686)
..++.+....||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999984
No 140
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.42 E-value=2.4e-12 Score=136.93 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=99.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch---hhhHHHH----------HHHHHHHHHhcCCeEEEEcc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS---EKSGAAR----------INEMFSIARRNAPAFVFVDE 270 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~---~~~~~~~----------vr~lF~~Ak~~~P~ILfIDE 270 (686)
.++|||.||||||||++|+++|.++|.|++.+++...... .|...-. ....+..|.. .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999998876554 1211000 1122334433 468999999
Q ss_pred chhhhccCCCCChhHHHHHHHHHHHhcC--CcccC-CcccccccccEEEEEecCCCC------------CCccccccCCc
Q 005643 271 IDAIAGRHARKDPRRRATFEALIAQLDG--DKERT-GIDRFSLRQAVIFICATNRPD------------ELDLEFVRPGR 335 (686)
Q Consensus 271 iDal~~~~~~~~~e~~~~l~~LL~~ld~--~~~~~-~~~~~~~~~~ViVIaaTN~p~------------~LD~aLlrpgR 335 (686)
+|...+ . +++.|...|+. ...-. ....+....++.||||+|..+ .+++|++. |
T Consensus 143 in~a~p-------~---~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--R 210 (327)
T TIGR01650 143 YDAGRP-------D---VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--R 210 (327)
T ss_pred hhccCH-------H---HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--h
Confidence 998732 2 34444444442 11111 112233445799999999854 46889998 9
Q ss_pred cceEEEeCCCCHHHHHHHHHHHhc
Q 005643 336 IDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 336 Fd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
|-..+.++.|+.+.-.+|+.....
T Consensus 211 F~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 211 WSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeeEeeCCCCCHHHHHHHHHhhcc
Confidence 988889999999999999987654
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.41 E-value=1.1e-11 Score=143.76 Aligned_cols=223 Identities=19% Similarity=0.230 Sum_probs=134.5
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEE
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVF 234 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~ 234 (686)
..+.+|++++|++...+.+. ..+..+ .+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~---~~ia~~---------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALL---AKVASP---------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHH---HHHhcC---------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 35689999999987655443 333222 35679999999999999999997654 468999
Q ss_pred EeCccccchh--------hhH----HHHHHHHHHH----------HHhcCCeEEEEccchhhhccCCCCChhHHHHHHHH
Q 005643 235 ASGAEFTDSE--------KSG----AARINEMFSI----------ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEAL 292 (686)
Q Consensus 235 is~s~~~~~~--------~~~----~~~vr~lF~~----------Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~L 292 (686)
++|..+.... +.. ....+..+.. .......+|||||++.+.. ...+.|
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~----------~~Q~~L 285 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP----------LLQNKL 285 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH----------HHHHHH
Confidence 9988753110 000 0001111110 0112346999999998842 234555
Q ss_pred HHHhcCCcccCCccc-----------------ccccccEEEEEe-cCCCCCCccccccCCccceEEEeCCCCHHHHHHHH
Q 005643 293 IAQLDGDKERTGIDR-----------------FSLRQAVIFICA-TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIF 354 (686)
Q Consensus 293 L~~ld~~~~~~~~~~-----------------~~~~~~ViVIaa-TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il 354 (686)
+..|+.....-..+. .....++++|++ |+.++.++++|++ ||. .+.+++++.++...|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 555543210000000 011234566655 5668889999988 996 6789999999999999
Q ss_pred HHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh--------CCCcccHHHHHHHHHH
Q 005643 355 DVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK--------GHSKIQQQDIVDVLDK 414 (686)
Q Consensus 355 ~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~--------~~~~It~~dl~~Al~~ 414 (686)
+..+...... .+.-+..|+..+. .++..-+++..+...+..+ +...|+.+|+.+++..
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 9887654321 2223455665543 4555556665554443221 2236889998888763
No 142
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.38 E-value=9.8e-12 Score=134.03 Aligned_cols=228 Identities=18% Similarity=0.200 Sum_probs=144.0
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-------CCCeE--------
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFV-------- 233 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-------g~~fi-------- 233 (686)
.|..|+|++++|..|. -.+-+| ...+++|.|+||||||++++++++-. +.|+-
T Consensus 2 pf~~ivgq~~~~~al~---~~~~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALL---LNVIDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHH---HHhcCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999998876542 233344 24579999999999999999999765 33322
Q ss_pred -EEeCcc----------------ccch-hhh------HHHHHHHHH-------HH--HHhcCCeEEEEccchhhhccCCC
Q 005643 234 -FASGAE----------------FTDS-EKS------GAARINEMF-------SI--ARRNAPAFVFVDEIDAIAGRHAR 280 (686)
Q Consensus 234 -~is~s~----------------~~~~-~~~------~~~~vr~lF-------~~--Ak~~~P~ILfIDEiDal~~~~~~ 280 (686)
.-+|.. |.+. .+. |.-.+...+ .. ..+....+|||||++.+..
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~---- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED---- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH----
Confidence 000010 0110 000 111111111 00 0012236999999999842
Q ss_pred CChhHHHHHHHHHHHhcCCc--ccCCcccccccccEEEEEecCCCC-CCccccccCCccceEEEeCCCCH-HHHHHHHHH
Q 005643 281 KDPRRRATFEALIAQLDGDK--ERTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLPDA-KQRVQIFDV 356 (686)
Q Consensus 281 ~~~e~~~~l~~LL~~ld~~~--~~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlrpgRFd~~I~v~~Pd~-~eR~~Il~~ 356 (686)
.+++.|+..|+... ....+........+++|+|+|..+ .++++++. ||..++.++.|+. ++|.+|++.
T Consensus 146 ------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 146 ------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred ------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHh
Confidence 36677888776432 001111122345689999988655 68999999 9999999999975 889999886
Q ss_pred HhcCC-------------------------------Cccccc--cHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 005643 357 HSAGK-------------------------------QLAEDV--NFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKI 403 (686)
Q Consensus 357 ~l~~~-------------------------------~l~~dv--dl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~I 403 (686)
..... .+.+.+ .+..++..+..-|.+.-..+++-|...|+.+|+..|
T Consensus 218 ~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V 297 (337)
T TIGR02030 218 RTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEV 297 (337)
T ss_pred hhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCC
Confidence 42210 011100 123444444444667777889999999999999999
Q ss_pred cHHHHHHHHHHHHHhcc
Q 005643 404 QQQDIVDVLDKQLLEGM 420 (686)
Q Consensus 404 t~~dl~~Al~~~~~~~~ 420 (686)
+.+|+..+..-++.++.
T Consensus 298 ~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 298 TVDDIRRVAVLALRHRL 314 (337)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999998887664
No 143
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.37 E-value=8.8e-12 Score=145.46 Aligned_cols=225 Identities=18% Similarity=0.219 Sum_probs=143.9
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh--------------------
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------------------- 228 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-------------------- 228 (686)
.|.+|+|++.++..|.- ...+| ...||||.|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~---~av~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLL---NAVDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHH---HhhCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 48899999987765532 33344 12479999999999999999999876
Q ss_pred ---------------CCCeEEEeCccccchhhhHHHHHHHHHHHH---------HhcCCeEEEEccchhhhccCCCCChh
Q 005643 229 ---------------GLPFVFASGAEFTDSEKSGAARINEMFSIA---------RRNAPAFVFVDEIDAIAGRHARKDPR 284 (686)
Q Consensus 229 ---------------g~~fi~is~s~~~~~~~~~~~~vr~lF~~A---------k~~~P~ILfIDEiDal~~~~~~~~~e 284 (686)
..||+.+.++........+. .+...+... ......|||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~-d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL-DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc-cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 24666665554322210110 011111100 01123599999999994
Q ss_pred HHHHHHHHHHHhcCCc---ccCCcccccccccEEEEEecCCC-CCCccccccCCccceEEEeCCCC-HHHHHHHHHHHhc
Q 005643 285 RRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRP-DELDLEFVRPGRIDRRLYIGLPD-AKQRVQIFDVHSA 359 (686)
Q Consensus 285 ~~~~l~~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p-~~LD~aLlrpgRFd~~I~v~~Pd-~~eR~~Il~~~l~ 359 (686)
...++.|+..|+... ...+ ........++||+|+|.. ..+.++|+. ||+.+|.++.|. .+++.++++....
T Consensus 140 -~~~q~~Ll~~le~g~~~v~r~g-~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 -DHLVDVLLDAAAMGVNRVEREG-LSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred -HHHHHHHHHHHhcCCEEEEECC-ceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHh
Confidence 246788888886432 1111 112334568999999854 368889998 999999998774 6777777764321
Q ss_pred C-------------------------------CCccccccHHHHHHhc--cCC-CHHHHHHHHHHHHHHHHHhCCCcccH
Q 005643 360 G-------------------------------KQLAEDVNFEELVFRT--VGF-SGADIRNLVNESGIMSVRKGHSKIQQ 405 (686)
Q Consensus 360 ~-------------------------------~~l~~dvdl~~La~~t--~G~-sgadL~~lv~eA~~~A~r~~~~~It~ 405 (686)
. ..+. +..+..++... .|. +.+....+++-|...|..+|+..|+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is-~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~ 294 (633)
T TIGR02442 216 FDADPEAFAARWAAEQEELRNRIARARSLLPSVRIS-DSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTA 294 (633)
T ss_pred hccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCH
Confidence 0 0111 11122222221 244 45566678888888999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 005643 406 QDIVDVLDKQLLEGM 420 (686)
Q Consensus 406 ~dl~~Al~~~~~~~~ 420 (686)
+|+..|+.-++.++.
T Consensus 295 ~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 295 EDVREAAELVLPHRR 309 (633)
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999999987665
No 144
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2.6e-11 Score=140.48 Aligned_cols=204 Identities=17% Similarity=0.243 Sum_probs=139.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------ 231 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------ 231 (686)
...+.+|+||+|++.+++.|...+. +. +.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~---~~--------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIA---TN--------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH---cC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 4566899999999988777666543 22 467889999999999999999999987532
Q ss_pred -------------eEEEeCccccchhhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005643 232 -------------FVFASGAEFTDSEKSGAARINEMFSIARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (686)
Q Consensus 232 -------------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~ 294 (686)
++.+++.+ ..+...++.+.+.+... ...|++|||+|.+. ....+.|+.
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~-----~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls----------~~a~naLLK 143 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS-----NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS----------QAAFNAFLK 143 (614)
T ss_pred hHHHHHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC----------HHHHHHHHH
Confidence 12222111 11234566766666432 23599999999984 235788998
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcccc-ccHHHHH
Q 005643 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELV 373 (686)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La 373 (686)
.|+..... +++|.+|+.+..|-+.|++ |+ ..+.|..++.++....++..+....+.-+ ..+..|+
T Consensus 144 ~LEepp~~-----------tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La 209 (614)
T PRK14971 144 TLEEPPSY-----------AIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA 209 (614)
T ss_pred HHhCCCCC-----------eEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88875433 5677777777888899998 87 56999999999988888876655444322 2467777
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 374 ~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
..+. .+.+++.+++......+ +.. |+.+++.+.+
T Consensus 210 ~~s~-gdlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 210 QKAD-GGMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHcC-CCHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 7764 46666666666554443 322 7776665544
No 145
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.35 E-value=1.9e-11 Score=147.16 Aligned_cols=174 Identities=20% Similarity=0.274 Sum_probs=116.0
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhh-
Q 005643 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS- 246 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~- 246 (686)
+.|+|++++.+.+...+...+.... ...++...+||+||||||||++|+++|..+ +.+++.++++++.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4678888776666665554321100 001334568999999999999999999976 568999999987653211
Q ss_pred ----------HHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 247 ----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 247 ----------~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
+......+....+....+||||||||.+.+ ...+.|+..|+...-..+..+.....+.+|
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~----------~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ii 711 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP----------DVFNVLLQVLDDGRLTDGQGRTVDFRNTVI 711 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH----------HHHHHHHHHHhcCceecCCCeEEecCCcEE
Confidence 111123344555566668999999998842 367788888865432222222223346789
Q ss_pred EEecCCCCC-------------------------CccccccCCccceEEEeCCCCHHHHHHHHHHHhc
Q 005643 317 ICATNRPDE-------------------------LDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 317 IaaTN~p~~-------------------------LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
|+|||.... +.|.|+. |+|.++.|.+++.+...+|+...+.
T Consensus 712 I~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 712 IMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred EEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 999998321 3355665 9999999999999999999886653
No 146
>PHA02244 ATPase-like protein
Probab=99.34 E-value=2.8e-11 Score=130.22 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=84.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh---h--hHHHHH-HHHHHHHHhcCCeEEEEccchhhhccC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE---K--SGAARI-NEMFSIARRNAPAFVFVDEIDAIAGRH 278 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~---~--~~~~~v-r~lF~~Ak~~~P~ILfIDEiDal~~~~ 278 (686)
..|||+||||||||++|+++|..++.||+.+++. .... + ...... ..-|-.|.. ...+|+|||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p-- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIP-- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCCH--
Confidence 4699999999999999999999999999999843 1110 0 000011 111222322 357999999998742
Q ss_pred CCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC-----------CCCccccccCCccceEEEeCCCCH
Q 005643 279 ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP-----------DELDLEFVRPGRIDRRLYIGLPDA 347 (686)
Q Consensus 279 ~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p-----------~~LD~aLlrpgRFd~~I~v~~Pd~ 347 (686)
.++..|...++...-...........++.+|+|+|.+ ..|++|++. || ..|+++.|+.
T Consensus 195 --------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 195 --------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred --------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 2344444444422111111222334568999999973 468999999 99 5799999983
Q ss_pred HHHHHHH
Q 005643 348 KQRVQIF 354 (686)
Q Consensus 348 ~eR~~Il 354 (686)
....|.
T Consensus 264 -~E~~i~ 269 (383)
T PHA02244 264 -IEHLIS 269 (383)
T ss_pred -HHHHHh
Confidence 333443
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.32 E-value=2.3e-11 Score=145.75 Aligned_cols=172 Identities=18% Similarity=0.192 Sum_probs=114.2
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhhCCccCce-EEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhh-
Q 005643 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRG-VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK- 245 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~g-vLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~- 245 (686)
+.|+|++++.+.+.+.+...+....+ -..|.| +||+||||||||.+|+++|..+ +..++.++++++.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 36778887766665555432211111 124565 7999999999999999999988 45789999888754310
Q ss_pred ----------hHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 246 ----------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 246 ----------~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
.|...-..+....+.+.++||+|||||...+ ...+.|+..+|...-..+.++.....+.+
T Consensus 642 ~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~----------~v~~~Llq~ld~g~l~d~~Gr~vd~~n~i 711 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHP----------DVLELFYQVFDKGVMEDGEGREIDFKNTV 711 (852)
T ss_pred ccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCH----------HHHHHHHHHhhcceeecCCCcEEeccccE
Confidence 1111112344555667789999999997742 35677777776543222222333345689
Q ss_pred EEEecCCCC-----------------------------CCccccccCCccceEEEeCCCCHHHHHHHHHHHhc
Q 005643 316 FICATNRPD-----------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 316 VIaaTN~p~-----------------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
||.|||... .+.|+|+. |++ .|.|.+.+.++..+|++..+.
T Consensus 712 iI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 712 ILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 999998621 14466666 997 889999999999999987654
No 148
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.32 E-value=3.4e-11 Score=130.02 Aligned_cols=140 Identities=29% Similarity=0.395 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhhHHHHHHHH------HHHHHh--cCC--eEEEEccchh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEM------FSIARR--NAP--AFVFVDEIDA 273 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~~~~~vr~l------F~~Ak~--~~P--~ILfIDEiDa 273 (686)
+++||.||||||||++|+++|..++.+|+.+.|...... ...|....... |..... ... +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 469999999999999999999999999999999976554 22222222211 110000 011 4999999997
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCccc-ccccccEEEEEecC-----CCCCCccccccCCccceEEEeCCCC-
Q 005643 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDR-FSLRQAVIFICATN-----RPDELDLEFVRPGRIDRRLYIGLPD- 346 (686)
Q Consensus 274 l~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~-~~~~~~ViVIaaTN-----~p~~LD~aLlrpgRFd~~I~v~~Pd- 346 (686)
..+ .+.+.|+..|+...-.-+... +....+++||+|+| ....|++|+++ ||...+.++.|+
T Consensus 124 a~p----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~ 191 (329)
T COG0714 124 APP----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS 191 (329)
T ss_pred CCH----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence 743 478889999888655544444 55667899999999 44568999999 998899999994
Q ss_pred HHHHHHHHHH
Q 005643 347 AKQRVQIFDV 356 (686)
Q Consensus 347 ~~eR~~Il~~ 356 (686)
..+...++..
T Consensus 192 ~~e~~~i~~~ 201 (329)
T COG0714 192 EEEERIILAR 201 (329)
T ss_pred hHHHHHHHHh
Confidence 4444444443
No 149
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=3.3e-11 Score=111.54 Aligned_cols=137 Identities=32% Similarity=0.528 Sum_probs=89.3
Q ss_pred HHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhH-HHH---HHH
Q 005643 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG-AAR---INE 253 (686)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~-~~~---vr~ 253 (686)
..+..+...+..+ ..++++++||||||||++++.+++.+ +.+++++++.++....... ... ...
T Consensus 5 ~~~~~i~~~~~~~---------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (151)
T cd00009 5 EAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL 75 (151)
T ss_pred HHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhH
Confidence 3455555555443 45689999999999999999999998 8999999998876553211 111 122
Q ss_pred HHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC--CCccccc
Q 005643 254 MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFV 331 (686)
Q Consensus 254 lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLl 331 (686)
.+..+....+.+|+|||++.+.. . ....++..+....... ....++.+|++||... .+++.+.
T Consensus 76 ~~~~~~~~~~~~lilDe~~~~~~-------~---~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~~~~~~~~~ 140 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSLSR-------G---AQNALLRVLETLNDLR-----IDRENVRVIGATNRPLLGDLDRALY 140 (151)
T ss_pred HHHhhccCCCeEEEEeChhhhhH-------H---HHHHHHHHHHhcCcee-----ccCCCeEEEEecCccccCCcChhHH
Confidence 23344456689999999998731 1 2233444333322110 0123478888998877 6777777
Q ss_pred cCCccceEEEeC
Q 005643 332 RPGRIDRRLYIG 343 (686)
Q Consensus 332 rpgRFd~~I~v~ 343 (686)
+ ||+.++.++
T Consensus 141 ~--r~~~~i~~~ 150 (151)
T cd00009 141 D--RLDIRIVIP 150 (151)
T ss_pred h--hhccEeecC
Confidence 7 998777765
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.31 E-value=4.5e-11 Score=143.66 Aligned_cols=175 Identities=18% Similarity=0.237 Sum_probs=114.6
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhh
Q 005643 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (686)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~ 246 (686)
++.|+|++.+.+.+...+...+...... .++...+||+||||||||++|+++|+.+ +.+++.++++++.+....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~---~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDP---NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCC---CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 5678899887777666665433110000 1222368999999999999999999876 568999999987653110
Q ss_pred -----------HHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 247 -----------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 247 -----------~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
+......+....+....+||||||++.+.+ ...+.|+..++...-..+..+.....+.+
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~----------~v~~~Ll~ile~g~l~d~~gr~vd~rn~i 713 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP----------DVFNILLQVLDDGRLTDGQGRTVDFRNTV 713 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH----------HHHHHHHHHHhhCceecCCceEEeecccE
Confidence 111112233333444558999999998742 35677777776432211111222234568
Q ss_pred EEEecCCCC-------------------------CCccccccCCccceEEEeCCCCHHHHHHHHHHHhc
Q 005643 316 FICATNRPD-------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 316 VIaaTN~p~-------------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
+|+|||... .+.|+|+. |+|..+.|.+++.+...+|++.++.
T Consensus 714 iI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 714 VIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred EEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 899999731 24467777 9999999999999999999887664
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.29 E-value=4.2e-11 Score=143.78 Aligned_cols=173 Identities=17% Similarity=0.222 Sum_probs=117.8
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhhCCccC-ceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhh-
Q 005643 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFV-RGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK- 245 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p-~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~- 245 (686)
+.|+|++++.+.+...+...+.... ....| ..+||+||||||||++|+++|+.+ +.+++.++++++.+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4678888877777665543221100 01224 357999999999999999999987 46899999988865311
Q ss_pred ----------hHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 246 ----------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 246 ----------~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
.+......+.+..+.+..+||+|||+|.+.+ ...+.|+..|+...-.....+.....+.+
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~----------~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP----------DIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH----------HHHHHHHHHhccCceecCCCcEEecCceE
Confidence 1111233456666666679999999998842 36788888887643222222233345689
Q ss_pred EEEecCCCCC-------------------------------------CccccccCCccceEEEeCCCCHHHHHHHHHHHh
Q 005643 316 FICATNRPDE-------------------------------------LDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358 (686)
Q Consensus 316 VIaaTN~p~~-------------------------------------LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l 358 (686)
+|+|||.... +.|.|+. |+|.+|.|.+.+.++..+|++..+
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 9999986321 1244555 999999999999999999998766
Q ss_pred c
Q 005643 359 A 359 (686)
Q Consensus 359 ~ 359 (686)
.
T Consensus 733 ~ 733 (821)
T CHL00095 733 K 733 (821)
T ss_pred H
Confidence 4
No 152
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.28 E-value=1.4e-10 Score=118.94 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=71.8
Q ss_pred EEEEecCC-------------CCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccc-cccHHHHHHhccCCC
Q 005643 315 IFICATNR-------------PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGFS 380 (686)
Q Consensus 315 iVIaaTN~-------------p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~s 380 (686)
+||.|||+ |.-+++.|+. |+ ..|..-+.+.++.++|++.......+.- +..+..|+......|
T Consensus 327 ivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ts 403 (456)
T KOG1942|consen 327 IVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTS 403 (456)
T ss_pred eEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchh
Confidence 66777776 4456777776 66 5677777889999999998876555543 233667777666666
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 381 GADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 381 gadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
-+-.-+|+.-|.+.|...|+..|..+|++++-+-
T Consensus 404 LRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~L 437 (456)
T KOG1942|consen 404 LRYAVQLLTPASILAKTNGRKEISVEDVEEVTEL 437 (456)
T ss_pred HHHHHHhcCHHHHHHHHcCCceeecccHHHHHHH
Confidence 6666777777888998999999999999887653
No 153
>PRK09087 hypothetical protein; Validated
Probab=99.28 E-value=1.3e-10 Score=119.05 Aligned_cols=203 Identities=19% Similarity=0.183 Sum_probs=128.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
-.+..+|++.+..+.-...+. .++++. + .....++|+||+|+|||+|+++++...+.. +++..++...
T Consensus 14 ~~~~~~~~~Fi~~~~N~~a~~----~l~~~~-----~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~ 81 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRAAVS----LVDHWP-----N-WPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD 81 (226)
T ss_pred CCCCCChhceeecCchHHHHH----HHHhcc-----c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH
Confidence 355678999987554333333 333321 1 123459999999999999999999886554 4444333322
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 005643 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (686)
Q Consensus 244 ~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (686)
. +..... .+|+|||+|.+.. + ...+-.+++.+.... ..+||+++..|
T Consensus 82 ~----------~~~~~~---~~l~iDDi~~~~~-----~---~~~lf~l~n~~~~~g------------~~ilits~~~p 128 (226)
T PRK09087 82 A----------ANAAAE---GPVLIEDIDAGGF-----D---ETGLFHLINSVRQAG------------TSLLMTSRLWP 128 (226)
T ss_pred H----------HHhhhc---CeEEEECCCCCCC-----C---HHHHHHHHHHHHhCC------------CeEEEECCCCh
Confidence 1 111111 3788999997731 1 122444444433211 14666666555
Q ss_pred CC---CccccccCCccc--eEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 324 DE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 324 ~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
.. ..+.|++ ||. ..+++..|+.+.|.+|++.++....+. ++.-+..|+++..+ +.+.+..+++.....+..
T Consensus 129 ~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~ 205 (226)
T PRK09087 129 SSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE 205 (226)
T ss_pred HHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Confidence 42 3678888 885 689999999999999999888654432 22336778877664 667777777776666655
Q ss_pred hCCCcccHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~ 415 (686)
.+ ..||...+++++...
T Consensus 206 ~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 206 RK-SRITRALAAEVLNEM 222 (226)
T ss_pred hC-CCCCHHHHHHHHHhh
Confidence 55 458998888887653
No 154
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=2.7e-10 Score=123.83 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=123.1
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC-------CeEEE-eC
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-------PFVFA-SG 237 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-------~fi~i-s~ 237 (686)
.+..|++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+++|+.+.. |.... .|
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 467899999999887777665442 246678999999999999999999998754 11100 11
Q ss_pred ---c-----------ccc---ch--h-------hhHHHHHHHHHHHHH----hcCCeEEEEccchhhhccCCCCChhHHH
Q 005643 238 ---A-----------EFT---DS--E-------KSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRA 287 (686)
Q Consensus 238 ---s-----------~~~---~~--~-------~~~~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~ 287 (686)
. ++. .. . .-+...+|.+-+... .....|++|||+|.+. ..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------~~ 156 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------RN 156 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------HH
Confidence 0 110 00 0 011233444433322 3345799999999994 23
Q ss_pred HHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccc
Q 005643 288 TFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV 367 (686)
Q Consensus 288 ~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv 367 (686)
..|.||..|+....+ +++|..|+.|+.+.+.+++ |+ ..+.+++|+.++..++++.......+. +.
T Consensus 157 aanaLLk~LEEpp~~-----------~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~ 221 (351)
T PRK09112 157 AANAILKTLEEPPAR-----------ALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GE 221 (351)
T ss_pred HHHHHHHHHhcCCCC-----------ceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HH
Confidence 568899998774432 4566667888999999988 88 699999999999999998643222221 22
Q ss_pred cHHHHHHhccCCCHHHHHHHHH
Q 005643 368 NFEELVFRTVGFSGADIRNLVN 389 (686)
Q Consensus 368 dl~~La~~t~G~sgadL~~lv~ 389 (686)
.+..++..+.| +++...++++
T Consensus 222 ~~~~i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 222 ITEALLQRSKG-SVRKALLLLN 242 (351)
T ss_pred HHHHHHHHcCC-CHHHHHHHHh
Confidence 25566666554 5555555544
No 155
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.24 E-value=3e-10 Score=126.26 Aligned_cols=200 Identities=16% Similarity=0.190 Sum_probs=121.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCcc-ccch-hhhH-HHHH--HHHHHHHHhc---CCeEEEEccchh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAE-FTDS-EKSG-AARI--NEMFSIARRN---APAFVFVDEIDA 273 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s~-~~~~-~~~~-~~~v--r~lF~~Ak~~---~P~ILfIDEiDa 273 (686)
..+|||+||||||||++|++++..++. +|....+.- .... .|.. .... ...|...... ...+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 357999999999999999999987643 566555442 1111 1210 0111 1223222111 234999999987
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC---CCccccccCCccceEEEeCCCC-HHH
Q 005643 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRIDRRLYIGLPD-AKQ 349 (686)
Q Consensus 274 l~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRFd~~I~v~~Pd-~~e 349 (686)
+. ..+.+.||..|....-..+......+..++|++ ||... ...+++.. ||-..+.+++|+ .++
T Consensus 119 as----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A-TN~LPE~g~~leAL~D--RFliri~vp~l~~~~~ 185 (498)
T PRK13531 119 AG----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTA-SNELPEADSSLEALYD--RMLIRLWLDKVQDKAN 185 (498)
T ss_pred CC----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE-CCCCcccCCchHHhHh--hEEEEEECCCCCchHH
Confidence 64 347889999986544333322233333444444 46422 23348888 998899999997 455
Q ss_pred HHHHHHHHhc--CCCcc--cccc-----------------------HHHHHHh---c---cCCCHHHHHHHHHHHHHHHH
Q 005643 350 RVQIFDVHSA--GKQLA--EDVN-----------------------FEELVFR---T---VGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 350 R~~Il~~~l~--~~~l~--~dvd-----------------------l~~La~~---t---~G~sgadL~~lv~eA~~~A~ 396 (686)
-.+|+..... ..+.. .-+. +..|... + ...|++--..+++-|...|.
T Consensus 186 e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~ 265 (498)
T PRK13531 186 FRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAF 265 (498)
T ss_pred HHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 5777765321 11110 0000 1233331 2 23788888999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (686)
-+|+..|+.+|+. .+..++.
T Consensus 266 l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 266 FSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HCCCCCCCHHHHH-HhHHHhc
Confidence 9999999999998 6666653
No 156
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.23 E-value=3.1e-11 Score=133.64 Aligned_cols=216 Identities=21% Similarity=0.264 Sum_probs=137.2
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCcccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFT 241 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~ 241 (686)
..+.+|+||+|....-..+.+.. + ..++.+..|||.|.+||||.++|++|-+. .+-||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~a---k-------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELA---K-------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHH---H-------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 45678999999874332222222 1 12456788999999999999999999664 57799999999987
Q ss_pred chhhh------------HHHH--HHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005643 242 DSEKS------------GAAR--INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (686)
Q Consensus 242 ~~~~~------------~~~~--vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~ 307 (686)
+..-+ |+.+ -..+|+.|.. .-||||||..+. ......||..|+...-..-++.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp----------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP----------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCC----------HHHHHHHHHHHhhceEEecCCC
Confidence 64211 1222 3345555533 369999999884 2356778888776543333333
Q ss_pred ccccccEEEEEecCCCCCCccccccCCccce-------EEEeCCCCHHHHHHHH----HHHhc----C----CC-ccccc
Q 005643 308 FSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRVQIF----DVHSA----G----KQ-LAEDV 367 (686)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR~~Il----~~~l~----~----~~-l~~dv 367 (686)
...+.+|.||||||+ .|-.++. .|+|-. ++.+..|...+|.+=+ .+++. . .+ +.++
T Consensus 376 ~~~~vDVRIIAATN~--nL~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~- 451 (560)
T COG3829 376 KPIPVDVRIIAATNR--NLEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD- 451 (560)
T ss_pred CceeeEEEEEeccCc--CHHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH-
Confidence 445567999999997 3333443 366632 6778889888885422 22222 1 11 2222
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHH
Q 005643 368 NFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (686)
Q Consensus 368 dl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 409 (686)
-+..|.+...--+-++|+|++.++...+- ....|+..|+-
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 24455554444478999999999887543 33447777765
No 157
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=3.7e-10 Score=123.34 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=122.9
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC--------------
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-------------- 231 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------------- 231 (686)
.+.+|++|+|++++++.|...+.. .+.|..+||+||+|+||+++|.++|+.+-+.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 567999999999888887765443 2567889999999999999999999976321
Q ss_pred --------------------eEEEeCccccchh-----hhHHHHHHHHHHHHH----hcCCeEEEEccchhhhccCCCCC
Q 005643 232 --------------------FVFASGAEFTDSE-----KSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKD 282 (686)
Q Consensus 232 --------------------fi~is~s~~~~~~-----~~~~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~ 282 (686)
++.+... ..+.. .-....+|.+-+.+. ...|.|++|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~-~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERS-WNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecc-cccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0111100 00000 011334555555433 3457899999999883
Q ss_pred hhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCC
Q 005643 283 PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ 362 (686)
Q Consensus 283 ~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~ 362 (686)
....|.||..++.... ++++|.+|+.++.+.+.+++ |+ ..+.|++|+.++-.+++..+...
T Consensus 155 ---~~aanaLLK~LEepp~-----------~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~-- 215 (365)
T PRK07471 155 ---ANAANALLKVLEEPPA-----------RSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD-- 215 (365)
T ss_pred ---HHHHHHHHHHHhcCCC-----------CeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc--
Confidence 3467889998876433 25777889999999999888 88 68999999999999998865421
Q ss_pred ccccccHHHHHHhccCCCHHHHHHHH
Q 005643 363 LAEDVNFEELVFRTVGFSGADIRNLV 388 (686)
Q Consensus 363 l~~dvdl~~La~~t~G~sgadL~~lv 388 (686)
..+..+..++..+.| ++....+++
T Consensus 216 -~~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 216 -LPDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred -CCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 111123456655555 454444443
No 158
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5e-11 Score=138.34 Aligned_cols=170 Identities=22% Similarity=0.326 Sum_probs=124.0
Q ss_pred cceecCcccHHHHHHHHHH----hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC---CCeEEEeCccccch
Q 005643 171 KEVVLGGDVWDLLDELMIY----MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTDS 243 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~----l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g---~~fi~is~s~~~~~ 243 (686)
+-|+||+++...+...+.- +++| -+|..++||.||+|+|||-||+++|..+. ..++.+++|+|++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp-------~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDP-------NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4578998776666555543 3333 23334677899999999999999999986 79999999999864
Q ss_pred hh-----------hHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 244 EK-----------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 244 ~~-----------~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
.. .|...-..+-+..+++..|||++|||+.-.+ .++|-||+.||...-..+..+.....
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp----------dV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP----------DVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH----------HHHHHHHHHhcCCeeecCCCCEEecc
Confidence 21 1222234555667777789999999998754 38899999998766665555666667
Q ss_pred cEEEEEecCCCC----------------------------CCccccccCCccceEEEeCCCCHHHHHHHHHHHhc
Q 005643 313 AVIFICATNRPD----------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 313 ~ViVIaaTN~p~----------------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
+.++|+|||--. .+.|+++. |+|.+|.|.+.+.+...+|+...+.
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 899999998631 12345555 8888888888888888888776653
No 159
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.20 E-value=1.8e-10 Score=123.01 Aligned_cols=69 Identities=32% Similarity=0.465 Sum_probs=54.2
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC--CCeEEEeCcccc
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFT 241 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g--~~fi~is~s~~~ 241 (686)
+....+.++||.++++..--+++.++... -..+++||.||||||||.+|-++|+++| +||+.++++++.
T Consensus 19 ~~~~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 19 ARYIADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp B-SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred EeeccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 34456789999999999999999888772 2468999999999999999999999997 899999988854
No 160
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.20 E-value=3.3e-10 Score=112.37 Aligned_cols=144 Identities=21% Similarity=0.280 Sum_probs=99.3
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------------------eEEEeCccccchhhhHHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFSI 257 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------------------fi~is~s~~~~~~~~~~~~vr~lF~~ 257 (686)
+.|..+||+||||+|||++|+++++.+... +..+.... ...+...++.+.+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~~~~~i~~i~~~ 87 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSIKVDQVRELVEF 87 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcCCHHHHHHHHHH
Confidence 467889999999999999999999986432 12221110 01223456555655
Q ss_pred HHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccC
Q 005643 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (686)
Q Consensus 258 Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp 333 (686)
+.. ....|++|||+|.+.. ...+.|+..|+.... ..++|.+||.+..+.+++++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~----------~~~~~Ll~~le~~~~-----------~~~~il~~~~~~~l~~~i~s- 145 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE----------AAANALLKTLEEPPP-----------NTLFILITPSPEKLLPTIRS- 145 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH----------HHHHHHHHHhcCCCC-----------CeEEEEEECChHhChHHHHh-
Confidence 543 3357999999999842 246778888876432 24667777788999999998
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccC
Q 005643 334 GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG 378 (686)
Q Consensus 334 gRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G 378 (686)
|+ ..+.+++|+.++..++++.+ + +. +..+..++..+.|
T Consensus 146 -r~-~~~~~~~~~~~~~~~~l~~~--g--i~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 146 -RC-QVLPFPPLSEEALLQWLIRQ--G--IS-EEAAELLLALAGG 183 (188)
T ss_pred -hc-EEeeCCCCCHHHHHHHHHHc--C--CC-HHHHHHHHHHcCC
Confidence 77 58999999999999998876 2 22 2335566655544
No 161
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.20 E-value=2.9e-10 Score=119.24 Aligned_cols=213 Identities=15% Similarity=0.255 Sum_probs=133.3
Q ss_pred ecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCccccch-
Q 005643 174 VLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS- 243 (686)
Q Consensus 174 vG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~~~~~- 243 (686)
||.+.+++.|+.+.+.+..|.. ..+.++||+|++|.|||++++.++... .+|++++.+..-.+.
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 6677788888888888888832 234579999999999999999998643 257887776442211
Q ss_pred -------------h---hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005643 244 -------------E---KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (686)
Q Consensus 244 -------------~---~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~ 307 (686)
+ ......-..+....+...+.+|+|||++.+... ....+..++|.| ..+-...
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG---s~~~qr~~Ln~L-K~L~NeL------- 179 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG---SYRKQREFLNAL-KFLGNEL------- 179 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc---cHHHHHHHHHHH-HHHhhcc-------
Confidence 0 001112223345556677889999999998632 222333333333 3321111
Q ss_pred ccccccEEEEEecCCCC--CCccccccCCccceEEEeCCCC-HHHHHHHHHHHhcCCCccccc-----cH-HHHHHhccC
Q 005643 308 FSLRQAVIFICATNRPD--ELDLEFVRPGRIDRRLYIGLPD-AKQRVQIFDVHSAGKQLAEDV-----NF-EELVFRTVG 378 (686)
Q Consensus 308 ~~~~~~ViVIaaTN~p~--~LD~aLlrpgRFd~~I~v~~Pd-~~eR~~Il~~~l~~~~l~~dv-----dl-~~La~~t~G 378 (686)
.-+++.++|..-.. .-|+.+.+ ||+ .+.+|... -++-..++..+-...++.... ++ ..|-..|.|
T Consensus 180 ---~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G 253 (302)
T PF05621_consen 180 ---QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG 253 (302)
T ss_pred ---CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 11255555543222 34677777 995 45565543 344455666665544443222 22 456666777
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Q 005643 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (686)
Q Consensus 379 ~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~ 410 (686)
..| ++..+++.|+..|++.|.+.||.+.+..
T Consensus 254 ~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 254 LIG-ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred chH-HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 655 7999999999999999999999987743
No 162
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.19 E-value=4.2e-11 Score=112.61 Aligned_cols=118 Identities=30% Similarity=0.401 Sum_probs=74.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhh-hH---HHHHH-----HHHHHHHhcCCeEEEEccchhhhc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEK-SG---AARIN-----EMFSIARRNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~-~~---~~~vr-----~lF~~Ak~~~P~ILfIDEiDal~~ 276 (686)
+|||+||||||||++|+.+|+.++.+++.++++....... .+ ..... ..+..+.. .++|+||||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 5899999999999999999999999999999888654311 00 00000 00000111 46899999999773
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCccc--CCcccccccc------cEEEEEecCCCC----CCccccccCCcc
Q 005643 277 RHARKDPRRRATFEALIAQLDGDKER--TGIDRFSLRQ------AVIFICATNRPD----ELDLEFVRPGRI 336 (686)
Q Consensus 277 ~~~~~~~e~~~~l~~LL~~ld~~~~~--~~~~~~~~~~------~ViVIaaTN~p~----~LD~aLlrpgRF 336 (686)
..+++.|+..++..... .+........ ++.+|+|+|..+ .+++++++ ||
T Consensus 79 ---------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ---------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 33566666666653322 1111111111 499999999988 89999999 87
No 163
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.19 E-value=1.7e-10 Score=131.58 Aligned_cols=196 Identities=14% Similarity=0.234 Sum_probs=122.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCC-eEEE---eCccccchh-h---hHHHHHH-HHHHHHHhcCCeEEEEccchh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP-FVFA---SGAEFTDSE-K---SGAARIN-EMFSIARRNAPAFVFVDEIDA 273 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~-fi~i---s~s~~~~~~-~---~~~~~vr-~lF~~Ak~~~P~ILfIDEiDa 273 (686)
...+|||+|+||||||++||++++.+... |... ++..+.... . .+...++ ..+.. ....+++|||+|.
T Consensus 235 ~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~ 311 (509)
T smart00350 235 GDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVL---ADNGVCCIDEFDK 311 (509)
T ss_pred ccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEe---cCCCEEEEechhh
Confidence 34579999999999999999999876543 3221 222221110 0 0000000 01111 1246999999999
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCc---ccCCcccccccccEEEEEecCCCC-------------CCccccccCCccc
Q 005643 274 IAGRHARKDPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRID 337 (686)
Q Consensus 274 l~~~~~~~~~e~~~~l~~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRFd 337 (686)
+.. .....|+..|+... ...+ .....+..+.||||+|..+ .|++++++ |||
T Consensus 312 l~~----------~~q~~L~e~me~~~i~i~k~G-~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFd 378 (509)
T smart00350 312 MDD----------SDRTAIHEAMEQQTISIAKAG-ITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFD 378 (509)
T ss_pred CCH----------HHHHHHHHHHhcCEEEEEeCC-EEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--cee
Confidence 842 35567777776532 1112 1122345689999999753 58999999 999
Q ss_pred eEEE-eCCCCHHHHHHHHHHHhcCCC-------------cc----------------cccc---HHHHH-----Hh----
Q 005643 338 RRLY-IGLPDAKQRVQIFDVHSAGKQ-------------LA----------------EDVN---FEELV-----FR---- 375 (686)
Q Consensus 338 ~~I~-v~~Pd~~eR~~Il~~~l~~~~-------------l~----------------~dvd---l~~La-----~~---- 375 (686)
..+. .+.|+.+...+|.++.+.... +. +.+. ...|. .+
T Consensus 379 Li~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~ 458 (509)
T smart00350 379 LLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDS 458 (509)
T ss_pred eEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccc
Confidence 8554 478999999888876332100 00 0000 01110 01
Q ss_pred ------ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 376 ------TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 376 ------t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
..+.|++.+..+++-|...|..+++..|+.+|+..|+.=
T Consensus 459 ~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 459 QSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred ccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 125688999999999999999999999999999998864
No 164
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=9.2e-11 Score=128.30 Aligned_cols=209 Identities=20% Similarity=0.188 Sum_probs=134.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEF 240 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~ 240 (686)
+.+...+.++||...+-..+.+.++..-. .+..|||.|.+||||.++||+|-.. .+.||+++||+.+
T Consensus 216 ~~~~~~~~~iIG~S~am~~ll~~i~~VA~----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 216 SEVVLEVGGIIGRSPAMRQLLKEIEVVAK----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred cchhcccccceecCHHHHHHHHHHHHHhc----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc
Confidence 34467899999998765555555544332 3568999999999999999999664 4679999999999
Q ss_pred cchhhhHH--HHHHHHHHHHHhcC--------CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 005643 241 TDSEKSGA--ARINEMFSIARRNA--------PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (686)
Q Consensus 241 ~~~~~~~~--~~vr~lF~~Ak~~~--------P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~ 310 (686)
.++.-+++ ...+..|.-|.... ..-||+|||..+.- .....||..++......-++.-..
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL----------~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL----------ALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred chHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH----------HHHHHHHHHHhhcceeecCCCcee
Confidence 87643221 12333333332211 24799999998842 255667777765433222222344
Q ss_pred cccEEEEEecCCCCCCccccccCCccce-------EEEeCCCCHHHHHH---HH-HHHh----cCCCc-c---ccccHHH
Q 005643 311 RQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRVQ---IF-DVHS----AGKQL-A---EDVNFEE 371 (686)
Q Consensus 311 ~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR~~---Il-~~~l----~~~~l-~---~dvdl~~ 371 (686)
+-+|.||||||+ +|..++.. |+|-. ++.+..|...+|.. +| .+++ ..... . +..-++.
T Consensus 356 kVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~ 432 (550)
T COG3604 356 KVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALEL 432 (550)
T ss_pred EEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHH
Confidence 557999999997 55555544 77732 56677788888743 12 2222 11111 1 1122566
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHH
Q 005643 372 LVFRTVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 372 La~~t~G~sgadL~~lv~eA~~~A 395 (686)
|.+...--+.++|+|+++.|+..|
T Consensus 433 L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 433 LSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHh
Confidence 666655557899999999999988
No 165
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.19 E-value=3.2e-10 Score=131.15 Aligned_cols=201 Identities=20% Similarity=0.282 Sum_probs=132.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CCeEEEeCccccch-hhhHHHHHHHHHHHH---------HhcCCeEEEEccc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDS-EKSGAARINEMFSIA---------RRNAPAFVFVDEI 271 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g--~~fi~is~s~~~~~-~~~~~~~vr~lF~~A---------k~~~P~ILfIDEi 271 (686)
-.+|||.|+||||||++|++++..++ .||+.+.++..... .+. . .+...+... .+....+||||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~-i-dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGG-I-DVEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccc-h-hhhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 45899999999999999999999765 46888875433222 121 1 111111100 0112359999999
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHhcCCc---ccCCcccccccccEEEEEecCCCC---CCccccccCCccceEEEeCC-
Q 005643 272 DAIAGRHARKDPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRIDRRLYIGL- 344 (686)
Q Consensus 272 Dal~~~~~~~~~e~~~~l~~LL~~ld~~~---~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRFd~~I~v~~- 344 (686)
+.+.. .+++.|+..|+... ...+. ....+.++.||+|+|..+ .|.++|+. ||+.++.+..
T Consensus 94 ~rl~~----------~~q~~Ll~al~~g~v~i~r~G~-~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 94 NLLDD----------GLSNRLLQALDEGVVIVEREGI-SVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred hhCCH----------HHHHHHHHHHHcCCeEEEECCC-ceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 99953 46788888886543 11111 123345689999999865 78899999 9999888754
Q ss_pred CCHHHHHHHHHHHhcC-------------------------CCccccccHHHHHHh--ccCCC-HHHHHHHHHHHHHHHH
Q 005643 345 PDAKQRVQIFDVHSAG-------------------------KQLAEDVNFEELVFR--TVGFS-GADIRNLVNESGIMSV 396 (686)
Q Consensus 345 Pd~~eR~~Il~~~l~~-------------------------~~l~~dvdl~~La~~--t~G~s-gadL~~lv~eA~~~A~ 396 (686)
|+.++|.+|++.+... ..+.++ .+..|+.. ..|.+ .+.-..+++-|...|+
T Consensus 161 ~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aa 239 (589)
T TIGR02031 161 ASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAHAA 239 (589)
T ss_pred CCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH
Confidence 6788899988765421 111111 12222222 23443 4555677888888999
Q ss_pred HhCCCcccHHHHHHHHHHHHHhcc
Q 005643 397 RKGHSKIQQQDIVDVLDKQLLEGM 420 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~~~~ 420 (686)
-+|+..|+.+|+..|+.-++.++.
T Consensus 240 l~gr~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 240 LHGRTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred HhCCCCCCHHHHHHHHHHHhhhhc
Confidence 999999999999999999987765
No 166
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.18 E-value=1.7e-10 Score=131.27 Aligned_cols=216 Identities=20% Similarity=0.266 Sum_probs=126.4
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHH-----------hCCCeEEE
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE-----------SGLPFVFA 235 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e-----------~g~~fi~i 235 (686)
..+|++++|.....+.+.+.+..+- ..+..|||+|++||||+++|++|-.. .+.||+.+
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 3579999999865555544443221 23457999999999999999999766 46799999
Q ss_pred eCccccchhhhH------------HH--HHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc
Q 005643 236 SGAEFTDSEKSG------------AA--RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE 301 (686)
Q Consensus 236 s~s~~~~~~~~~------------~~--~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~ 301 (686)
+|+.+.+..... +. .-..+|+.|. ...||||||+.+.. .....|+..++...-
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~----------~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPL----------PLQTRLLRVLEEKEV 351 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCH----------HHHHHHHhhhhcCeE
Confidence 999886542111 00 0113444442 35899999999952 345667777754322
Q ss_pred cCCcccccccccEEEEEecCCCCCCccccccCCccce-------EEEeCCCCHHHHHH----HHHHHhcC------CCcc
Q 005643 302 RTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRVQ----IFDVHSAG------KQLA 364 (686)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR~~----Il~~~l~~------~~l~ 364 (686)
...+.....+.+|.+|++||.. +... ...|+|.. .+.+..|...+|.+ +++.++.. .++.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~--L~~~-v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD--LEED-VRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred EecCCCceeccceEEEEecCCC--HHHH-HhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 1111111223457899999864 2222 22244432 56778888888754 33344332 1222
Q ss_pred cccc------HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005643 365 EDVN------FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (686)
Q Consensus 365 ~dvd------l~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 408 (686)
.+.- +..|....---+-++|+|++++++..+.......|+.+++
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 2110 1233333333467899999998887653222234555544
No 167
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.18 E-value=1.2e-09 Score=114.10 Aligned_cols=189 Identities=15% Similarity=0.193 Sum_probs=115.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC-CeEE--EeCccccc---------hhhh------HH---HHHHHHH-HHHHhcC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGL-PFVF--ASGAEFTD---------SEKS------GA---ARINEMF-SIARRNA 262 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~-~fi~--is~s~~~~---------~~~~------~~---~~vr~lF-~~Ak~~~ 262 (686)
..++|+||+|+|||++++.+++++.. .+.. +....... ..+. .. ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45889999999999999999998752 2221 11111100 0000 01 1122211 2334566
Q ss_pred CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC---CCc----cccccCCc
Q 005643 263 PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD---ELD----LEFVRPGR 335 (686)
Q Consensus 263 P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD----~aLlrpgR 335 (686)
+.+|+|||+|.+.. . .+.. +..+....... ...+.|+.+ ..++ .+. ..+.+ |
T Consensus 124 ~~vliiDe~~~l~~-------~---~~~~-l~~l~~~~~~~-------~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r 182 (269)
T TIGR03015 124 RALLVVDEAQNLTP-------E---LLEE-LRMLSNFQTDN-------AKLLQIFLV-GQPEFRETLQSPQLQQLRQ--R 182 (269)
T ss_pred CeEEEEECcccCCH-------H---HHHH-HHHHhCcccCC-------CCeEEEEEc-CCHHHHHHHcCchhHHHHh--h
Confidence 78999999998832 1 1222 22222211110 111222322 2222 221 12444 7
Q ss_pred cceEEEeCCCCHHHHHHHHHHHhcCCCc-----cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Q 005643 336 IDRRLYIGLPDAKQRVQIFDVHSAGKQL-----AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVD 410 (686)
Q Consensus 336 Fd~~I~v~~Pd~~eR~~Il~~~l~~~~l-----~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~ 410 (686)
+...+++++.+.++..+++...+..... -.+..+..|++.+.|. ++.|..+++.+...|..++...|+.+++..
T Consensus 183 ~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~ 261 (269)
T TIGR03015 183 IIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVRE 261 (269)
T ss_pred eeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 7778999999999999999877653221 2234578889998886 566999999999999999999999999999
Q ss_pred HHHHH
Q 005643 411 VLDKQ 415 (686)
Q Consensus 411 Al~~~ 415 (686)
++...
T Consensus 262 ~~~~~ 266 (269)
T TIGR03015 262 VIAEI 266 (269)
T ss_pred HHHHh
Confidence 98763
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=7.4e-10 Score=127.96 Aligned_cols=257 Identities=14% Similarity=0.125 Sum_probs=139.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE-Ee---Ccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF-AS---GAE 239 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~-is---~s~ 239 (686)
...+.+++||+|+++..+.++.++.....+ ..+.+.++|+||||||||++++.+|++++..++. .+ |..
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~ 149 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDF 149 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcc
Confidence 567789999999987666655554432222 2334569999999999999999999998876533 11 111
Q ss_pred cc-------------chhhhHHHHHHHHHHHHHh----------cCCeEEEEccchhhhccCCCCChhHHHHHHHHHH-H
Q 005643 240 FT-------------DSEKSGAARINEMFSIARR----------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA-Q 295 (686)
Q Consensus 240 ~~-------------~~~~~~~~~vr~lF~~Ak~----------~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~-~ 295 (686)
.. ..+......++.+...+.. ....|||||||+.+..+ ....+..+|. .
T Consensus 150 ~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~~lq~lLr~~ 222 (637)
T TIGR00602 150 QKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTRALHEILRWK 222 (637)
T ss_pred cccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHHHHHHHHHHH
Confidence 00 0011223445555555542 34579999999988632 1123444544 2
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCC--------------CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPD--------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK 361 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~ 361 (686)
... .. ..+ +|+++|..+. .|.+++++.-|. .+|.|.+.+.....+.|+..+...
T Consensus 223 ~~e-~~---------~~p-LI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 223 YVS-IG---------RCP-LVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred hhc-CC---------Cce-EEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 211 11 112 3333332221 133677742244 479999999999777776555432
Q ss_pred C--c------cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-------CCCcccHHHHHHHHHHHHHhccccccch
Q 005643 362 Q--L------AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK-------GHSKIQQQDIVDVLDKQLLEGMGVLLTE 426 (686)
Q Consensus 362 ~--l------~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~-------~~~~It~~dl~~Al~~~~~~~~g~~l~~ 426 (686)
. . ..+..+..|+.. +.+|++.+++.....+.+. +...++..++..+..+. ...+.
T Consensus 291 ~~~~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~------~~~t~ 360 (637)
T TIGR00602 291 AKKNGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKG------KHSSN 360 (637)
T ss_pred hhccccccccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccC------CCCCc
Confidence 1 1 112245667664 4458888888665554332 22345555554444332 11222
Q ss_pred hHHhhhhcchhhHHHHHHHHHHHHHHHHHhh
Q 005643 427 EEQQKCEQSVSFEKKRLLAVHEAGHIVLAHL 457 (686)
Q Consensus 427 ~~~~~~~~~~~~~~~~~vA~HEaGhav~a~~ 457 (686)
.+.+ .-..+...+.-+..+|-.|..|....
T Consensus 361 ~e~~-~l~~~~~rd~sl~lfhalgkily~Kr 390 (637)
T TIGR00602 361 NENQ-EIQALGGKDVSLFLFRALGKILYCKR 390 (637)
T ss_pred hhHH-HHHhhccccchhHHHHHhChhhcccc
Confidence 2111 11122333445667877777665443
No 169
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.16 E-value=1.9e-10 Score=105.31 Aligned_cols=122 Identities=31% Similarity=0.496 Sum_probs=82.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC---eEEEeCccccchh---------------hhHHHHHHHHHHHHHhcCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASGAEFTDSE---------------KSGAARINEMFSIARRNAPAF 265 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~---fi~is~s~~~~~~---------------~~~~~~vr~lF~~Ak~~~P~I 265 (686)
+..++|+||||||||++++++|..+..+ +++++++...... .......+.++..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999998775 8888888654321 234556778888998887899
Q ss_pred EEEccchhhhccCCCCChhHHHHHHH-----HHHHhcCCcccCCcccccccccEEEEEecCC-CCCCccccccCCccceE
Q 005643 266 VFVDEIDAIAGRHARKDPRRRATFEA-----LIAQLDGDKERTGIDRFSLRQAVIFICATNR-PDELDLEFVRPGRIDRR 339 (686)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~~l~~-----LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~-p~~LD~aLlrpgRFd~~ 339 (686)
|||||++.+.... ....... ...... ...+..+|+++|. ....+..+.+ |++.+
T Consensus 82 iiiDei~~~~~~~------~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~ 141 (148)
T smart00382 82 LILDEITSLLDAE------QEALLLLLEELRLLLLLK------------SEKNLTVILTTNDEKDLGPALLRR--RFDRR 141 (148)
T ss_pred EEEECCcccCCHH------HHHHHHhhhhhHHHHHHH------------hcCCCEEEEEeCCCccCchhhhhh--ccceE
Confidence 9999999986421 0000000 001111 1123688888886 3344444444 88888
Q ss_pred EEeCCC
Q 005643 340 LYIGLP 345 (686)
Q Consensus 340 I~v~~P 345 (686)
+.+..+
T Consensus 142 ~~~~~~ 147 (148)
T smart00382 142 IVLLLI 147 (148)
T ss_pred EEecCC
Confidence 887655
No 170
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=8.1e-10 Score=118.55 Aligned_cols=169 Identities=9% Similarity=0.178 Sum_probs=115.0
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC--------eEEEeCccc
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP--------FVFASGAEF 240 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~--------fi~is~s~~ 240 (686)
+|+||+|++.+++.|...+. . .+.|..+||+||+|+|||++|+++|+.+.+. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~---~--------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII---K--------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH---c--------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 59999999987777666542 2 3567889999999999999999999976332 2222211
Q ss_pred cchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 241 TDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 241 ~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
+...-+...++++.+.+.. ....|++||++|.+. ....|.||..++.... ++++
T Consensus 69 -~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~----------~~a~naLLK~LEepp~-----------~t~~ 126 (313)
T PRK05564 69 -NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT----------EQAQNAFLKTIEEPPK-----------GVFI 126 (313)
T ss_pred -cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC----------HHHHHHHHHHhcCCCC-----------CeEE
Confidence 1111223446666554432 334699999999883 3357899999987443 2566
Q ss_pred EEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccC
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG 378 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G 378 (686)
|.+|+.++.+.+.+++ |+ ..+++..|+.++....++..... .. +..+..++..+.|
T Consensus 127 il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 127 ILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDG 182 (313)
T ss_pred EEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCC
Confidence 6667888999999998 88 68999999999988887755432 11 2234455555544
No 171
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.14 E-value=1.5e-09 Score=123.02 Aligned_cols=214 Identities=18% Similarity=0.252 Sum_probs=128.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCch--hhh----h-------------------hCCccCceEEEEcCCCCcHH
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPM--QYY----E-------------------RGVQFVRGVLLSGPPGTGKT 218 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~--~~~----~-------------------~g~~~p~gvLL~GPPGTGKT 218 (686)
+..+..|.|+.|.+.+-.. ++-|||... .|. + .+-+..+-+||+||||.|||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~---~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKT 340 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRR---MLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKT 340 (877)
T ss_pred ccChhHHHHHhcchhHHHH---HHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChh
Confidence 4567889999998865432 223333221 111 1 12234467899999999999
Q ss_pred HHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHH-HHHHH---hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005643 219 LFARTLAKESGLPFVFASGAEFTDSEKSGAARINEM-FSIAR---RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (686)
Q Consensus 219 ~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~l-F~~Ak---~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~ 294 (686)
+||+-+|+.+|..++.|++|+--.... ...++..+ +...- ...|.+|+|||||--. ...++.++.
T Consensus 341 TLAHViAkqaGYsVvEINASDeRt~~~-v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----------~~~Vdvils 409 (877)
T KOG1969|consen 341 TLAHVIAKQAGYSVVEINASDERTAPM-VKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----------RAAVDVILS 409 (877)
T ss_pred HHHHHHHHhcCceEEEecccccccHHH-HHHHHHHHHhhccccccCCCcceEEEecccCCc----------HHHHHHHHH
Confidence 999999999999999999998544321 11222222 22111 2568899999999331 234444544
Q ss_pred HhcCCccc-CC----cc--cc-----cccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCC
Q 005643 295 QLDGDKER-TG----ID--RF-----SLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ 362 (686)
Q Consensus 295 ~ld~~~~~-~~----~~--~~-----~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~ 362 (686)
.+...... .| .+ +. .... -||+.||.. --|||+----|-.+|.|.+|...-..+-|+..+....
T Consensus 410 lv~a~~k~~~Gkq~~~~~~rkkkr~~~L~R--PIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~ 485 (877)
T KOG1969|consen 410 LVKATNKQATGKQAKKDKKRKKKRSKLLTR--PIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHREN 485 (877)
T ss_pred HHHhhcchhhcCcccchhhhhhhccccccC--CEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhc
Confidence 44311100 00 00 00 0112 356667753 3466642224778999999988777777776666555
Q ss_pred cccc-ccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 363 LAED-VNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 363 l~~d-vdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
+..+ -.+..|+..+. .||++.+|....++.+..
T Consensus 486 mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 486 MRADSKALNALCELTQ----NDIRSCINTLQFLASNVD 519 (877)
T ss_pred CCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHhcc
Confidence 5433 23555665554 499999999888876543
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.14 E-value=2.3e-09 Score=107.83 Aligned_cols=169 Identities=21% Similarity=0.255 Sum_probs=120.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
....+...+++|.+..|+.|-+-. .+|.+ ..+..+|||+|..|||||+++||+-++. |..++.|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT------~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNT------EQFAE--GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHH------HHHHc--CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 455689999999999888765433 33322 2467899999999999999999997765 556777776655
Q ss_pred cchhhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 241 TDSEKSGAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 241 ~~~~~~~~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
.. +-.+++..+. ...-|||+|++- + ++.+.....|-..|+|.... .+.+|+|.||
T Consensus 125 ~~--------Lp~l~~~Lr~~~~kFIlFcDDLS-F--------e~gd~~yK~LKs~LeG~ve~-------rP~NVl~YAT 180 (287)
T COG2607 125 AT--------LPDLVELLRARPEKFILFCDDLS-F--------EEGDDAYKALKSALEGGVEG-------RPANVLFYAT 180 (287)
T ss_pred hh--------HHHHHHHHhcCCceEEEEecCCC-C--------CCCchHHHHHHHHhcCCccc-------CCCeEEEEEe
Confidence 43 4556666655 335799999873 1 11233456677778876543 3568999999
Q ss_pred cCCCCCCcccc--------------------ccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc
Q 005643 320 TNRPDELDLEF--------------------VRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA 364 (686)
Q Consensus 320 TN~p~~LD~aL--------------------lrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~ 364 (686)
+|+-..|+.-+ -=+.||...+.|.+++.++-.+|+..+++...++
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 99966554211 1125999999999999999999999988766554
No 173
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.13 E-value=5.2e-10 Score=126.57 Aligned_cols=216 Identities=18% Similarity=0.253 Sum_probs=131.2
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-------------------
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES------------------- 228 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~------------------- 228 (686)
.+|+||.|++.+++.+.-. +.....++|.||||||||++|+++++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~a--------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA--------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh--------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 4899999998765544332 1234579999999999999999998632
Q ss_pred ---------CCCeEEEeCccccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005643 229 ---------GLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (686)
Q Consensus 229 ---------g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~ 298 (686)
..||...+++..... .+.+...-...+..| ...+|||||++.+.. ..++.|+..|+.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~~----------~~~~~L~~~LE~ 321 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFKR----------SVLDALREPIED 321 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCCH----------HHHHHHHHHHHc
Confidence 123433333322211 111111111122333 346999999998842 356666666654
Q ss_pred Ccc---cCCcccccccccEEEEEecCCC------C-----------------CCccccccCCccceEEEeCCCCHHH---
Q 005643 299 DKE---RTGIDRFSLRQAVIFICATNRP------D-----------------ELDLEFVRPGRIDRRLYIGLPDAKQ--- 349 (686)
Q Consensus 299 ~~~---~~~~~~~~~~~~ViVIaaTN~p------~-----------------~LD~aLlrpgRFd~~I~v~~Pd~~e--- 349 (686)
..- ..+. ......++.+|+|+|.- + .+...|+. |||.++.++.++..+
T Consensus 322 ~~v~i~r~g~-~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~ 398 (499)
T TIGR00368 322 GSISISRASA-KIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLS 398 (499)
T ss_pred CcEEEEecCc-ceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhc
Confidence 321 1111 11223468999999862 1 47778888 999999998765432
Q ss_pred ----------HHHHHHHH------hcCC---Cccccc----------------cHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005643 350 ----------RVQIFDVH------SAGK---QLAEDV----------------NFEELVFRTVGFSGADIRNLVNESGIM 394 (686)
Q Consensus 350 ----------R~~Il~~~------l~~~---~l~~dv----------------dl~~La~~t~G~sgadL~~lv~eA~~~ 394 (686)
|..+.+.. +.+. .+...+ ++-.-+....++|.+....+++-|.-.
T Consensus 399 ~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTi 478 (499)
T TIGR00368 399 TGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTI 478 (499)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 22332211 1111 111111 111112234568999999999999999
Q ss_pred HHHhCCCcccHHHHHHHHH
Q 005643 395 SVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 395 A~r~~~~~It~~dl~~Al~ 413 (686)
|.-++.+.|+.+|+.+|+.
T Consensus 479 AdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 479 ADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999974
No 174
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.13 E-value=7e-10 Score=128.62 Aligned_cols=103 Identities=16% Similarity=0.271 Sum_probs=68.4
Q ss_pred cccEEEEEecCCC--CCCccccccCCccc---eEEEeCC--C-CHHHHHHHHHHHh---cCCCcccccc---HHHHH---
Q 005643 311 RQAVIFICATNRP--DELDLEFVRPGRID---RRLYIGL--P-DAKQRVQIFDVHS---AGKQLAEDVN---FEELV--- 373 (686)
Q Consensus 311 ~~~ViVIaaTN~p--~~LD~aLlrpgRFd---~~I~v~~--P-d~~eR~~Il~~~l---~~~~l~~dvd---l~~La--- 373 (686)
+.++.||+++|.. ..+++.|++ ||+ ..+.++. | +.+.|.++.+... +.....+.++ +..|.
T Consensus 266 p~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~ 343 (608)
T TIGR00764 266 PCDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREA 343 (608)
T ss_pred ccceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHH
Confidence 3468999999974 578999999 998 6666533 4 4566655554322 2221111222 23332
Q ss_pred HhccC------CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 374 FRTVG------FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 374 ~~t~G------~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
.+..| .+.++|.+++++|...|..+++..|+.+|+.+|++..
T Consensus 344 ~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 344 QRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 11111 3579999999999888888888899999999998764
No 175
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.13 E-value=2.2e-09 Score=114.78 Aligned_cols=155 Identities=23% Similarity=0.343 Sum_probs=104.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC------------------------CCeEEEeCccccchhhhHHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG------------------------LPFVFASGAEFTDSEKSGAARINEMFSIA 258 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g------------------------~~fi~is~s~~~~~~~~~~~~vr~lF~~A 258 (686)
.|..+||+||||||||++|.++|+++. -.++.++.++-.... .....++.+-+..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i~~~~vr~~~~~~ 101 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-IIVEQVRELAEFL 101 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-chHHHHHHHHHHh
Confidence 445799999999999999999999886 356666665544321 1233444444433
Q ss_pred Hh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCC
Q 005643 259 RR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPG 334 (686)
Q Consensus 259 k~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpg 334 (686)
.. ....|++|||+|.+.. ...|.++..+.....+ ..+|.+||.++.+-+.+++
T Consensus 102 ~~~~~~~~~kviiidead~mt~----------~A~nallk~lEep~~~-----------~~~il~~n~~~~il~tI~S-- 158 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTE----------DAANALLKTLEEPPKN-----------TRFILITNDPSKILPTIRS-- 158 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHhH----------HHHHHHHHHhccCCCC-----------eEEEEEcCChhhccchhhh--
Confidence 32 2357999999999952 5678999988875543 5888899999999998988
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 335 RIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 335 RFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
|+ ..+.|++|+........+ +..+..++... .+|+...++.....+.
T Consensus 159 Rc-~~i~f~~~~~~~~i~~~e----------~~~l~~i~~~~----~gd~r~~i~~lq~~~~ 205 (325)
T COG0470 159 RC-QRIRFKPPSRLEAIAWLE----------DQGLEEIAAVA----EGDARKAINPLQALAA 205 (325)
T ss_pred cc-eeeecCCchHHHHHHHhh----------ccchhHHHHHH----HHHHHcCCCHHHHHHH
Confidence 87 578887766555554444 22344555443 3356655554444443
No 176
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.9e-09 Score=115.61 Aligned_cols=182 Identities=17% Similarity=0.222 Sum_probs=123.0
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP----------------- 231 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~----------------- 231 (686)
.|++|+|++++++.|...+.. .+.|..+||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999998888776643 2456799999999999999999999876321
Q ss_pred -eEEEeCccccch----------h--------hhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHH
Q 005643 232 -FVFASGAEFTDS----------E--------KSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRAT 288 (686)
Q Consensus 232 -fi~is~s~~~~~----------~--------~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~ 288 (686)
++.+........ . .-....+|++.+.+.. ....|++||++|.+. ...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------~~a 140 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------EAA 140 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC----------HHH
Confidence 122221100000 0 0112345666554442 335799999999984 346
Q ss_pred HHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcccccc
Q 005643 289 FEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN 368 (686)
Q Consensus 289 l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd 368 (686)
.|.||..|+... . .++|..|+.++.|-|.+++ |+ ..+.|++|+.++..++|+........ +.+
T Consensus 141 aNaLLK~LEEPp-~-----------~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~ 203 (314)
T PRK07399 141 ANALLKTLEEPG-N-----------GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NIN 203 (314)
T ss_pred HHHHHHHHhCCC-C-----------CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhH
Confidence 789999998754 2 3567777889999999998 88 78999999999999998865432211 223
Q ss_pred HHHHHHhccCCCHHHHHHHHH
Q 005643 369 FEELVFRTVGFSGADIRNLVN 389 (686)
Q Consensus 369 l~~La~~t~G~sgadL~~lv~ 389 (686)
+..++....| +++...++++
T Consensus 204 ~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 204 FPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHHHcCC-CHHHHHHHHH
Confidence 4667766555 5555444443
No 177
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=8.3e-10 Score=120.85 Aligned_cols=144 Identities=22% Similarity=0.346 Sum_probs=105.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCc-cccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA-EFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR 280 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s-~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~ 280 (686)
+-..+||+||||+|||.||-.+|...+.||+.+-.. +.... ....-..++..|+.|.+..-+||++|+|+.|..=..-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI 616 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI 616 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc
Confidence 346899999999999999999999999999966444 44443 2233456899999999988899999999998632222
Q ss_pred CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCcc-ccccCCccceEEEeCCCCH-HHHHHHHHH
Q 005643 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDL-EFVRPGRIDRRLYIGLPDA-KQRVQIFDV 356 (686)
Q Consensus 281 ~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~-aLlrpgRFd~~I~v~~Pd~-~eR~~Il~~ 356 (686)
+......+++.|+..+....... ...+|++||.+.+.|.. .++. .|+..+++|..+. ++..++++.
T Consensus 617 GPRfSN~vlQaL~VllK~~ppkg--------~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 617 GPRFSNLVLQALLVLLKKQPPKG--------RKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred CchhhHHHHHHHHHHhccCCCCC--------ceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 33345567777777776643321 24788899988766532 4555 8999999988754 666666653
No 178
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.11 E-value=5.5e-10 Score=127.25 Aligned_cols=218 Identities=17% Similarity=0.152 Sum_probs=126.3
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccch
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS 243 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~ 243 (686)
..+|++++|.....+.+.+.+..+- +.+..|||+|++||||+++|++|-.. .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 4679999999865555444443221 23467999999999999999999764 4679999999988653
Q ss_pred hhhH------------HH--HHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc
Q 005643 244 EKSG------------AA--RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309 (686)
Q Consensus 244 ~~~~------------~~--~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~ 309 (686)
.... +. ....+|+.|. ...||||||+.+.. .....|+..++.......+....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~----------~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPL----------PLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCH----------HHHHHHHHHHhcCcEEecCCCce
Confidence 2110 00 0123444442 35799999999952 34566777665432211111112
Q ss_pred ccccEEEEEecCCCC--CCccccccCC---ccceEEEeCCCCHHHHHH----HHHHHhcC------CCccccccHHH---
Q 005643 310 LRQAVIFICATNRPD--ELDLEFVRPG---RIDRRLYIGLPDAKQRVQ----IFDVHSAG------KQLAEDVNFEE--- 371 (686)
Q Consensus 310 ~~~~ViVIaaTN~p~--~LD~aLlrpg---RFd~~I~v~~Pd~~eR~~----Il~~~l~~------~~l~~dvdl~~--- 371 (686)
...+|.+|++||..- .+....+|+. |+. .+.+..|...+|.+ +++.++.. .++.++ .+..
T Consensus 345 ~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~-a~~~~~~ 422 (526)
T TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEA-AAQVLAG 422 (526)
T ss_pred eeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHH-HHHHhHH
Confidence 234578999998642 1222112111 221 46777788777754 33333322 112211 1222
Q ss_pred ----HHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHH
Q 005643 372 ----LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (686)
Q Consensus 372 ----La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 409 (686)
|....---+-++|++++++++..+.......|+.+++.
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 44444444678899999988876532223457777654
No 179
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.11 E-value=1.7e-10 Score=113.01 Aligned_cols=121 Identities=22% Similarity=0.340 Sum_probs=80.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCC----CeEEEeCccccchhhhHHHHHHHHHHHH----HhcCCeEEEEccchhh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGL----PFVFASGAEFTDSEKSGAARINEMFSIA----RRNAPAFVFVDEIDAI 274 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~----~fi~is~s~~~~~~~~~~~~vr~lF~~A----k~~~P~ILfIDEiDal 274 (686)
+-..+||.||+|+|||.+|+++|..+.. +++.++++++.... .....+..+...+ ......||||||||.+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~-~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD-DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH-HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc-hHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 3456899999999999999999999996 99999999998821 1011111111111 1111139999999999
Q ss_pred hccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC
Q 005643 275 AGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD 324 (686)
Q Consensus 275 ~~~~~~~-~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~ 324 (686)
..+...+ +.....+++.||..|++..-.....+.....++++|+|+|.-.
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 7653222 3344567888999888754433222334456799999999754
No 180
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.11 E-value=3.2e-10 Score=113.19 Aligned_cols=207 Identities=21% Similarity=0.288 Sum_probs=129.6
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-CC----CeEEEeC
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GL----PFVFASG 237 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-g~----~fi~is~ 237 (686)
++..++.+.||+|.++..+.|+-+...-..| +++|.||||||||+-+.++|+++ |- .++.++.
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 4677889999999998888887766554444 69999999999999999999986 32 3556665
Q ss_pred ccccchhhhHHHHHHHHHHHHHhcCC----eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 005643 238 AEFTDSEKSGAARINEMFSIARRNAP----AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (686)
Q Consensus 238 s~~~~~~~~~~~~vr~lF~~Ak~~~P----~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (686)
|+-..- ...+.--+.|.+-+-.-| .||++||.|++.. ...+.|-..|+-..+.
T Consensus 87 SdeRGI--DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~----------gAQQAlRRtMEiyS~t----------- 143 (333)
T KOG0991|consen 87 SDERGI--DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA----------GAQQALRRTMEIYSNT----------- 143 (333)
T ss_pred cccccc--HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh----------HHHHHHHHHHHHHccc-----------
Confidence 553221 111222245555543222 5999999999852 1334444555544433
Q ss_pred EEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHH
Q 005643 314 VIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESG 392 (686)
Q Consensus 314 ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~ 392 (686)
..+..+||..+.+=+.+.+ |+ ..+.+...+..+...-+....+..++. .+.-++.+.--..| |+++.+|...
T Consensus 144 tRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnLQ 216 (333)
T KOG0991|consen 144 TRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNLQ 216 (333)
T ss_pred chhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHHH
Confidence 3677889988887777776 66 345555555555444333333333322 22235666544444 7888777643
Q ss_pred HHHHHhCCCcccHHHHHHHHH
Q 005643 393 IMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 393 ~~A~r~~~~~It~~dl~~Al~ 413 (686)
+.-.|...|+.+.+-+.++
T Consensus 217 --st~~g~g~Vn~enVfKv~d 235 (333)
T KOG0991|consen 217 --STVNGFGLVNQENVFKVCD 235 (333)
T ss_pred --HHhccccccchhhhhhccC
Confidence 4455677788777655544
No 181
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.10 E-value=7.3e-10 Score=122.32 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=91.8
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC-----e--EEEe----Cc
Q 005643 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP-----F--VFAS----GA 238 (686)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-----f--i~is----~s 238 (686)
++++.+.+ ..++.++..+.. .++++|+||||||||++|+++|..+... + +.++ ..
T Consensus 174 l~d~~i~e---~~le~l~~~L~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPE---TTIETILKRLTI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCH---HHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 55665554 344444444443 4689999999999999999999887431 1 2222 11
Q ss_pred cccchh---hhHHH----HHHHHHHHHHhc--CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc--------
Q 005643 239 EFTDSE---KSGAA----RINEMFSIARRN--APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE-------- 301 (686)
Q Consensus 239 ~~~~~~---~~~~~----~vr~lF~~Ak~~--~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~-------- 301 (686)
+++... +.+.. .+..+...|+.. .|+|||||||+.-. ..+.+..++..|+....
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan---------i~kiFGel~~lLE~~~rg~~~~v~l 310 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN---------LSKVFGEVMMLMEHDKRGENWSVPL 310 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC---------HHHhhhhhhhhccccccccccceee
Confidence 222111 11111 233445666653 58999999999653 22344455555543210
Q ss_pred ---cCCcccccccccEEEEEecCCCC----CCccccccCCccceEEEeCC
Q 005643 302 ---RTGIDRFSLRQAVIFICATNRPD----ELDLEFVRPGRIDRRLYIGL 344 (686)
Q Consensus 302 ---~~~~~~~~~~~~ViVIaaTN~p~----~LD~aLlrpgRFd~~I~v~~ 344 (686)
......+..+.++.||||+|..+ .+|.||+| ||. .|++.+
T Consensus 311 ~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 311 TYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 01123467788999999999988 79999999 994 566654
No 182
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.10 E-value=1e-09 Score=125.58 Aligned_cols=212 Identities=22% Similarity=0.249 Sum_probs=121.0
Q ss_pred CcccccceecCcccHH-HHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcccc
Q 005643 166 TKSMYKEVVLGGDVWD-LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~-~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~ 241 (686)
...+|++++|....-+ .++.+.... .....|||+|++||||+++|+++-... +.||+.++|+.+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4578999999875333 222222221 224459999999999999999985543 4699999999986
Q ss_pred chhhhHH-------------HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc
Q 005643 242 DSEKSGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF 308 (686)
Q Consensus 242 ~~~~~~~-------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~ 308 (686)
+...... .....+|+.| ....|||||||.+.. .....|+..+....-.......
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSP----------RMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCH----------HHHHHHHHHHhcCCcccCCCCc
Confidence 5311100 0011234443 245799999999953 2345666666442211111111
Q ss_pred cccccEEEEEecCCCC-------CCccccccCCccceEEEeCCCCHHHHHH-H---HHHHhc----CC-----Ccccccc
Q 005643 309 SLRQAVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ-I---FDVHSA----GK-----QLAEDVN 368 (686)
Q Consensus 309 ~~~~~ViVIaaTN~p~-------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~-I---l~~~l~----~~-----~l~~dvd 368 (686)
....++.||+||+.+- .+.+.|.. |+. .+.+..|...+|.+ | ++.++. .. .+.++ -
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~-a 410 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD-L 410 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH-H
Confidence 2234588999887642 23333443 543 47777888777753 2 222221 11 12222 2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005643 369 FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (686)
Q Consensus 369 l~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 408 (686)
+..|....---+-++|++++..|...+ ....|+.+|+
T Consensus 411 ~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 411 NTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 455555433346678888888877654 2345776664
No 183
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.3e-10 Score=116.81 Aligned_cols=146 Identities=27% Similarity=0.384 Sum_probs=96.8
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhC-------Cc-cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERG-------VQ-FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g-------~~-~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
-|+|++.+|+.|.-.|- ..|+++. .. ...+|||.||.|||||+||+.+|+.+++||...++..+.+.
T Consensus 62 YVIGQe~AKKvLsVAVY-----NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 62 YVIGQEQAKKVLSVAVY-----NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred heecchhhhceeeeeeh-----hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 36899988887755432 1222221 11 13579999999999999999999999999999999999987
Q ss_pred hhhHH---HHHHHHHHHHH----hcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccC--Ccccccc
Q 005643 244 EKSGA---ARINEMFSIAR----RNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERT--GIDRFSL 310 (686)
Q Consensus 244 ~~~~~---~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~--~~~~~~~ 310 (686)
...|+ ..+-.+...|. +....||+|||||.++.+..+ .+-..+...+.||..++|...+- .+.+.++
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP 216 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHP 216 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCC
Confidence 43332 23444444332 123469999999999866432 22334567788999998864332 2334444
Q ss_pred cccEEEEEecCC
Q 005643 311 RQAVIFICATNR 322 (686)
Q Consensus 311 ~~~ViVIaaTN~ 322 (686)
.+.++-|=|+|-
T Consensus 217 ~Qe~iqvDT~NI 228 (408)
T COG1219 217 QQEFIQVDTSNI 228 (408)
T ss_pred ccceEEEcccce
Confidence 455555555554
No 184
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.08 E-value=1.1e-09 Score=121.30 Aligned_cols=213 Identities=23% Similarity=0.277 Sum_probs=135.0
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccch
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS 243 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~ 243 (686)
...+.+++|...+-+.+.+.+.-+-.. ...||++|++||||.++||+|-.. .+.||+.+||..+.+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 457889999987777776666554433 567999999999999999999654 4669999999998765
Q ss_pred hhhH-------------HHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 005643 244 EKSG-------------AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (686)
Q Consensus 244 ~~~~-------------~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~ 310 (686)
..++ ..+-...|+.|. ...||||||..+. ......||..+....-..-+.....
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~mp----------l~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEMP----------LELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccCC----------HHHHHHHHHHHHcCeeEecCCCccc
Confidence 2211 111223455443 3589999999985 2356778888876543333333445
Q ss_pred cccEEEEEecCCCCCCccccccCCccc-------eEEEeCCCCHHHHHH----HHHHHhc----CCC-cccccc---HHH
Q 005643 311 RQAVIFICATNRPDELDLEFVRPGRID-------RRLYIGLPDAKQRVQ----IFDVHSA----GKQ-LAEDVN---FEE 371 (686)
Q Consensus 311 ~~~ViVIaaTN~p~~LD~aLlrpgRFd-------~~I~v~~Pd~~eR~~----Il~~~l~----~~~-l~~dvd---l~~ 371 (686)
+-+|.||+|||+ +|...+.. |+|- .++.+..|...+|.+ +++++++ ... -...++ +..
T Consensus 274 ~vdvRiIaaT~~--dL~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 274 KVDVRIIAATNR--DLEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred ceeeEEEeecCc--CHHHHHHc-CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 567999999997 34333332 5652 278888999888864 2333332 111 112233 333
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005643 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (686)
Q Consensus 372 La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 408 (686)
|....---+-++|+|++..+++.+ ....|+.+++
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l 384 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILS---EGPEIEVEDL 384 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhc
Confidence 433332235678888888777665 3344665554
No 185
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.07 E-value=6.5e-10 Score=121.17 Aligned_cols=207 Identities=22% Similarity=0.269 Sum_probs=124.4
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHH---H-hCCCeEEEeCccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK---E-SGLPFVFASGAEF 240 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~---e-~g~~fi~is~s~~ 240 (686)
-....|++++|.... ++++++.++. |. +....||+.|++||||+++|+++.. . .+.||+.+||+.+
T Consensus 72 ~~~~~~~~LIG~~~~---~~~~~eqik~---~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 72 LKSEALDDLIGESPS---LQELREQIKA---YA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred ccchhhhhhhccCHH---HHHHHHHHHh---hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 445679999998743 3333333332 22 3446799999999999999999943 2 4679999999999
Q ss_pred cchhhhHH-------------HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005643 241 TDSEKSGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (686)
Q Consensus 241 ~~~~~~~~-------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~ 307 (686)
.+...... ..-..+|++|. ..+||+|||..+... ....|+..|+...-..-+..
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~LP~~----------~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRLPPE----------GQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhCCHh----------HHHHHHHHHHcCceEecCCC
Confidence 87632211 11234444442 358999999999542 45667777776443322222
Q ss_pred ccccccEEEEEecCCCCCCcccccc-CCccc--eEEEeCCCCHHHHHH----HHHH----HhcCCCcccccc----HHHH
Q 005643 308 FSLRQAVIFICATNRPDELDLEFVR-PGRID--RRLYIGLPDAKQRVQ----IFDV----HSAGKQLAEDVN----FEEL 372 (686)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlr-pgRFd--~~I~v~~Pd~~eR~~----Il~~----~l~~~~l~~dvd----l~~L 372 (686)
.....+|.+|+|||. .++.+++. ..-+. ..+.+.+|+..+|.. +++. +++........+ +..|
T Consensus 209 ~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 209 QPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 344567999999974 34443332 01111 245567777777743 2233 333333322222 3333
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHH
Q 005643 373 VFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 373 a~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
-....--+-++|+|++..++..+.
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhc
Confidence 333333377899999999987774
No 186
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.06 E-value=3.3e-09 Score=121.27 Aligned_cols=201 Identities=19% Similarity=0.226 Sum_probs=121.3
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchhh
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEK 245 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~~ 245 (686)
++.+++|.....+.+.+.+..+- ..+..|||+|++|||||++|++|... .+.||+.++|..+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 68899999865554444444322 23567999999999999999999776 457999999999865311
Q ss_pred hHH-------------HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 246 SGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 246 ~~~-------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
... ......|+.| ....|||||||.+.. .....|+..++........+......
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPL----------ALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCH----------HHHHHHHHHHhcCCEeeCCCCcceec
Confidence 100 0011134433 245799999999952 24566666665432111111122334
Q ss_pred cEEEEEecCCCC-------CCccccccCCccceEEEeCCCCHHHHHH----HHHHHhcC---------CCccccccHHHH
Q 005643 313 AVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSAG---------KQLAEDVNFEEL 372 (686)
Q Consensus 313 ~ViVIaaTN~p~-------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~----Il~~~l~~---------~~l~~dvdl~~L 372 (686)
++.+|++||..- .+.+.|.. |+. .+.+..|...+|.+ ++++++.. ..+. +.-+..|
T Consensus 322 ~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s-~~a~~~L 397 (509)
T PRK05022 322 DVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLS-PAAQAAL 397 (509)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCC-HHHHHHH
Confidence 689999998742 12222222 332 46677888877754 22333221 1111 1225566
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHH
Q 005643 373 VFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 373 a~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
....---+.++|+++++.|+..+.
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhcC
Confidence 666555578899999999988764
No 187
>PRK04132 replication factor C small subunit; Provisional
Probab=99.06 E-value=3.3e-09 Score=125.60 Aligned_cols=170 Identities=17% Similarity=0.205 Sum_probs=122.4
Q ss_pred EEEEc--CCCCcHHHHHHHHHHHh-----CCCeEEEeCccccchhhhHHHHHHHHHHHHHhc------CCeEEEEccchh
Q 005643 207 VLLSG--PPGTGKTLFARTLAKES-----GLPFVFASGAEFTDSEKSGAARINEMFSIARRN------APAFVFVDEIDA 273 (686)
Q Consensus 207 vLL~G--PPGTGKT~LAralA~e~-----g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~------~P~ILfIDEiDa 273 (686)
-+..| |++.|||++|+++|+++ +.+++.+++++... ...++.+.+.+... ...|+||||+|.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg-----id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG-----INVIREKVKEFARTKPIGGASFKIIFLDEADA 641 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc-----HHHHHHHHHHHHhcCCcCCCCCEEEEEECccc
Confidence 35668 99999999999999997 56899999998532 22455555443322 236999999999
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHH
Q 005643 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (686)
Q Consensus 274 l~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~I 353 (686)
+. ....+.|+..|+.... .+.+|++||.+..+.+++++ |+ ..+.|++|+.++....
T Consensus 642 Lt----------~~AQnALLk~lEep~~-----------~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 642 LT----------QDAQQALRRTMEMFSS-----------NVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred CC----------HHHHHHHHHHhhCCCC-----------CeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHH
Confidence 94 2357889998887543 36899999999999999998 88 7899999999999888
Q ss_pred HHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005643 354 FDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 354 l~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 411 (686)
++..+.+..+. ++..+..++..+.| +.+..-++++.++.. ...|+.+++...
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 88776644332 34457888888777 444455555543321 235787776544
No 188
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=3.8e-09 Score=114.20 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=105.8
Q ss_pred cccceec-CcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q 005643 169 MYKEVVL-GGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---------------- 231 (686)
Q Consensus 169 ~f~dvvG-~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~---------------- 231 (686)
.|+.|+| ++.+.+.|...+. . .+.|..+||+||+|+|||++|+++|+.+..+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~---~--------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA---K--------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH---c--------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4888888 6666666665543 2 2567889999999999999999999876432
Q ss_pred --------eEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005643 232 --------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (686)
Q Consensus 232 --------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~ 299 (686)
+..+... ....+...++++.+.+.. ....|++|||+|.+. ....|.||..|+..
T Consensus 72 ~~~~~hpD~~~i~~~----~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~----------~~a~NaLLK~LEEP 137 (329)
T PRK08058 72 IDSGNHPDVHLVAPD----GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT----------ASAANSLLKFLEEP 137 (329)
T ss_pred HhcCCCCCEEEeccc----cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC----------HHHHHHHHHHhcCC
Confidence 1111110 001123456666554432 234699999999984 34678999999875
Q ss_pred cccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHH
Q 005643 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356 (686)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~ 356 (686)
... +++|.+|+.+..|.+.+++ |+ ..+++.+|+.++..++++.
T Consensus 138 p~~-----------~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 138 SGG-----------TTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCC-----------ceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 443 5777788888999999998 88 6899999999988777764
No 189
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.03 E-value=3.3e-09 Score=114.49 Aligned_cols=199 Identities=19% Similarity=0.204 Sum_probs=114.1
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhh
Q 005643 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (686)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~ 246 (686)
|++++|.....+.+.+.+..+ ++.+..|||+|++||||+++|+++-... +.||+.++|..+.+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 678888875444333333322 1234679999999999999999996544 579999999987542110
Q ss_pred H----H---------HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 005643 247 G----A---------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (686)
Q Consensus 247 ~----~---------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (686)
. . ......|..| ....|||||+|.+.. .....|+..++...............+
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~----------~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM----------LVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred HHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 0 0 0011223333 246899999999953 245566666654321111011122235
Q ss_pred EEEEEecCCC-------CCCccccccCCccceEEEeCCCCHHHHHH----HHHHHhc----CC--C----ccccccHHHH
Q 005643 314 VIFICATNRP-------DELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSA----GK--Q----LAEDVNFEEL 372 (686)
Q Consensus 314 ViVIaaTN~p-------~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~----Il~~~l~----~~--~----l~~dvdl~~L 372 (686)
+.||+||+.. ..+.+.|.. ||. .+.+..|...+|.+ +++.++. .. . +. ..-+..|
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s-~~al~~L 217 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFT-ERARETL 217 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHH
Confidence 8889988763 234455554 553 35666777777743 3333331 11 1 11 1124555
Q ss_pred HHhccCCCHHHHHHHHHHHHHHH
Q 005643 373 VFRTVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 373 a~~t~G~sgadL~~lv~eA~~~A 395 (686)
....---+-++|+++++.|...+
T Consensus 218 ~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 218 LNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HhCCCCcHHHHHHHHHHHHHHhc
Confidence 55544446778888888877644
No 190
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.03 E-value=2.9e-09 Score=122.48 Aligned_cols=216 Identities=20% Similarity=0.220 Sum_probs=125.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
.....+|++++|....-+.+.+.+..+. .....|||+|++|||||++|++|.... +.||+.++|..+
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 3456789999999865444444333322 234579999999999999999998764 579999999988
Q ss_pred cchhhhHH----H---------HHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005643 241 TDSEKSGA----A---------RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (686)
Q Consensus 241 ~~~~~~~~----~---------~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~ 307 (686)
.+...... . .....|+.| ...+|||||||.+.. .....|+..++..........
T Consensus 259 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~----------~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 259 SETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISP----------AFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred CHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCH----------HHHHHHHHHHhcCcEEECCCC
Confidence 55321100 0 000112222 346899999999953 245666666654321110001
Q ss_pred ccccccEEEEEecCCCCCCccccccCCccce-------EEEeCCCCHHHHH----HHHHHHhcC------CCc-cccccH
Q 005643 308 FSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRV----QIFDVHSAG------KQL-AEDVNF 369 (686)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR~----~Il~~~l~~------~~l-~~dvdl 369 (686)
.....++.+|+||+.. +.. +...|+|.. .+.+..|...+|. .|++.++.. .+. -.+.-+
T Consensus 326 ~~~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 326 RTLKVDVRLVAATNRD--LEE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred ceEeecEEEEEeCCCC--HHH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 1122357899988763 111 112234421 4455666665553 344444321 111 111225
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005643 370 EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (686)
Q Consensus 370 ~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 408 (686)
..|....---+.++|+++++.|+..+ ....|+.+|+
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l 438 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDF 438 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHC
Confidence 56666654457789999999887654 2346887775
No 191
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.7e-09 Score=113.25 Aligned_cols=89 Identities=26% Similarity=0.390 Sum_probs=67.3
Q ss_pred eEEEEccchhhhccCCC--CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec----CCCCCCccccccCCccc
Q 005643 264 AFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT----NRPDELDLEFVRPGRID 337 (686)
Q Consensus 264 ~ILfIDEiDal~~~~~~--~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT----N~p~~LD~aLlrpgRFd 337 (686)
.||||||||.++.+.+. ++..++.....||-..+|..-++... ....+.+++||+. ..|.+|=|.|. |||.
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 59999999999876532 24566777788888888865444321 2234568999886 45788888887 5999
Q ss_pred eEEEeCCCCHHHHHHHHH
Q 005643 338 RRLYIGLPDAKQRVQIFD 355 (686)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~ 355 (686)
-.+++...+.+.-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999888875
No 192
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.02 E-value=5.6e-09 Score=122.65 Aligned_cols=215 Identities=17% Similarity=0.212 Sum_probs=124.1
Q ss_pred cccccceecCcccHH-HHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccc
Q 005643 167 KSMYKEVVLGGDVWD-LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~-~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~ 242 (686)
..+|++++|....-+ .++.+....+ ....|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 457889998875433 3333322222 34569999999999999999997754 57999999998864
Q ss_pred hhhhH--------HHH--HHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 243 SEKSG--------AAR--INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 243 ~~~~~--------~~~--vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
..... ... ....|+.| ....||||||+.+.. .....|+..++.............+-
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~----------~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSP----------ELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 31100 000 00122222 346899999999953 24556666665432111111111123
Q ss_pred cEEEEEecCCCCCCccccccCCccc-------eEEEeCCCCHHHHHH----HHHHHhcCC------Cc-cccccHHHHHH
Q 005643 313 AVIFICATNRPDELDLEFVRPGRID-------RRLYIGLPDAKQRVQ----IFDVHSAGK------QL-AEDVNFEELVF 374 (686)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd-------~~I~v~~Pd~~eR~~----Il~~~l~~~------~l-~~dvdl~~La~ 374 (686)
++.+|+|||..- . .+...|+|. ..+.+..|...+|.+ +++.++... .. -.+..+..|..
T Consensus 457 ~~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 457 DVRVIATTTADL--A-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eEEEEEeccCCH--H-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 578999998642 1 222224442 156778888888843 233333211 11 11223566666
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 411 (686)
..---+.++|+++++.|...+ ....|+.+|+...
T Consensus 534 y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~ 567 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEH 567 (638)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchh
Confidence 654457789999999887654 2345777776433
No 193
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=6.2e-09 Score=112.25 Aligned_cols=149 Identities=19% Similarity=0.261 Sum_probs=103.7
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------------------eEEEeCccccchhhhHHHHHHHHHH
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFS 256 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------------------fi~is~s~~~~~~~~~~~~vr~lF~ 256 (686)
.+.|.++||+||+|+|||++|+++|+.+.+. ++.+....-. ..-+.+.+|.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~--~~i~id~iR~l~~ 96 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD--KTIKVDQVRELVS 96 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC--CCCCHHHHHHHHH
Confidence 4578899999999999999999999987541 1222111000 0123455666665
Q ss_pred HHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCcccccc
Q 005643 257 IARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR 332 (686)
Q Consensus 257 ~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlr 332 (686)
.+.. ....|++||++|.+. ....|.||..|+.... ++++|.+|+.++.|.|.+++
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~----------~~aaNaLLK~LEEPp~-----------~~~fiL~t~~~~~ll~TI~S 155 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN----------RNAANALLKSLEEPSG-----------DTVLLLISHQPSRLLPTIKS 155 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC----------HHHHHHHHHHHhCCCC-----------CeEEEEEECChhhCcHHHHh
Confidence 5543 345699999999994 3578999999988543 36888999999999999999
Q ss_pred CCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccC
Q 005643 333 PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVG 378 (686)
Q Consensus 333 pgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G 378 (686)
|+ ..+.|++|+.++-.+.+...... ..+.+...++....|
T Consensus 156 --Rc-~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 156 --RC-QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred --hc-eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 99 56999999999988888755321 122233445555554
No 194
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.01 E-value=5e-09 Score=123.93 Aligned_cols=205 Identities=19% Similarity=0.206 Sum_probs=120.4
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccch
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS 243 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~ 243 (686)
+.+|++++|.....+.+.+-+..+. .....|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 4679999999866555544444322 224579999999999999999997644 679999999987532
Q ss_pred h------hh------H-HHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 005643 244 E------KS------G-AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (686)
Q Consensus 244 ~------~~------~-~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~ 310 (686)
. +. + .......|+.| ...+||||||+.+.. .....|+..++.............
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~~----------~~Q~~L~~~l~~~~~~~~g~~~~~ 508 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMPL----------ELQPKLLRVLQEQEFERLGSNKII 508 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCCH----------HHHHHHHHHHHhCCEEeCCCCCcc
Confidence 1 10 0 01112234433 246899999999952 345667666654321111111122
Q ss_pred cccEEEEEecCCCC--CCccccccCC---ccceEEEeCCCCHHHHHH----HHHHHhcC------CCc--cccccHHHHH
Q 005643 311 RQAVIFICATNRPD--ELDLEFVRPG---RIDRRLYIGLPDAKQRVQ----IFDVHSAG------KQL--AEDVNFEELV 373 (686)
Q Consensus 311 ~~~ViVIaaTN~p~--~LD~aLlrpg---RFd~~I~v~~Pd~~eR~~----Il~~~l~~------~~l--~~dvdl~~La 373 (686)
..++.+|++|+..- .+....+++. |+ ..+.+..|...+|.+ +++.++.. ... -...-+..|.
T Consensus 509 ~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~ 587 (686)
T PRK15429 509 QTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLS 587 (686)
T ss_pred cceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 34689999998642 1111111111 22 156788888888855 33333221 111 1122345565
Q ss_pred HhccCCCHHHHHHHHHHHHHHH
Q 005643 374 FRTVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 374 ~~t~G~sgadL~~lv~eA~~~A 395 (686)
...---+-++|+++++.|+..+
T Consensus 588 ~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 588 NMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred hCCCCCcHHHHHHHHHHHHHhC
Confidence 5554457788888888887654
No 195
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.01 E-value=3.3e-09 Score=114.31 Aligned_cols=173 Identities=10% Similarity=0.096 Sum_probs=109.1
Q ss_pred cccc-ceecCcccHHHHHHHHHHhCCchhhhhhC-CccCceEEEEcCCCCcHHHHHHHHHHHhCC-------CeEEEeC-
Q 005643 168 SMYK-EVVLGGDVWDLLDELMIYMGNPMQYYERG-VQFVRGVLLSGPPGTGKTLFARTLAKESGL-------PFVFASG- 237 (686)
Q Consensus 168 ~~f~-dvvG~~e~k~~L~elv~~l~~p~~~~~~g-~~~p~gvLL~GPPGTGKT~LAralA~e~g~-------~fi~is~- 237 (686)
.-|+ +++|++++ +.+++++++... .| ....+.++|+||||||||++|++||+.++. |++.+..
T Consensus 47 ~~F~~~~~G~~~~---i~~lv~~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~ 119 (361)
T smart00763 47 RFFDHDFFGMEEA---IERFVNYFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred cccchhccCcHHH---HHHHHHHHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEec
Confidence 3567 89999865 566666766553 22 234577899999999999999999999977 9999988
Q ss_pred ---ccccch-hhhHHHHHHHHHHHHHhc----------------------------------------------------
Q 005643 238 ---AEFTDS-EKSGAARINEMFSIARRN---------------------------------------------------- 261 (686)
Q Consensus 238 ---s~~~~~-~~~~~~~vr~lF~~Ak~~---------------------------------------------------- 261 (686)
+.+.+. .+......|..|...-.-
T Consensus 120 ~~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~ 199 (361)
T smart00763 120 GEESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDEN 199 (361)
T ss_pred CCCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCC
Confidence 555444 333344444443322100
Q ss_pred ------------------------------------CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCc
Q 005643 262 ------------------------------------APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGI 305 (686)
Q Consensus 262 ------------------------------------~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~ 305 (686)
+.+|+-|+|++.. ....++.||..++...-....
T Consensus 200 ~qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~----------~~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 200 NQDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA----------DIKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred cccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC----------CHHHHHHHhhhhhcceEecCC
Confidence 0012222222221 234677888888764433211
Q ss_pred ccccccccEEEEEecCCCC-------CCccccccCCccceEEEeCCC-CHHHHHHHHHHHhcC
Q 005643 306 DRFSLRQAVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLP-DAKQRVQIFDVHSAG 360 (686)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~-------~LD~aLlrpgRFd~~I~v~~P-d~~eR~~Il~~~l~~ 360 (686)
......-..+||++||..+ ...++|++ |+. .|.++.| +..+-.+|.+..+..
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 1112233468999999873 56789998 996 7888887 567777888776654
No 196
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.01 E-value=3.7e-09 Score=114.19 Aligned_cols=177 Identities=23% Similarity=0.241 Sum_probs=104.6
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhHH-------------HHHHHHHHHHHhcCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA-------------ARINEMFSIARRNAPAFV 266 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~~-------------~~vr~lF~~Ak~~~P~IL 266 (686)
....|||+|++||||+++|++|.... +.||+.++|..+.+...... .....+|+.| ....|
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL 97 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTL 97 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEE
Confidence 34679999999999999999996544 57999999998754311100 0011224433 34689
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC-------CCccccccCCccceE
Q 005643 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-------ELDLEFVRPGRIDRR 339 (686)
Q Consensus 267 fIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-------~LD~aLlrpgRFd~~ 339 (686)
||||||.+.. .....|+..++.......+.......+|.+|++||..- .+.+.|.. ||. .
T Consensus 98 ~Ldei~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~ 164 (329)
T TIGR02974 98 FLDELATASL----------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-F 164 (329)
T ss_pred EeCChHhCCH----------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-c
Confidence 9999999952 24556666665432111111112234689999998631 23344444 553 4
Q ss_pred EEeCCCCHHHHHH----HHHHHhc------CCCc---cccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005643 340 LYIGLPDAKQRVQ----IFDVHSA------GKQL---AEDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 340 I~v~~Pd~~eR~~----Il~~~l~------~~~l---~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A 395 (686)
+.+..|...+|.+ +++.++. +.+. -.+.-+..|....---+.++|+++++.++..+
T Consensus 165 ~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 165 DVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 6677788777754 3333322 1111 11222455665554446788888888877654
No 197
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.01 E-value=9.5e-11 Score=108.16 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=67.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCc-cccchhhhHHHHH---HHHHHHHHh-cCCeEEEEccchhhhccCCC
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA-EFTDSEKSGAARI---NEMFSIARR-NAPAFVFVDEIDAIAGRHAR 280 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s-~~~~~~~~~~~~v---r~lF~~Ak~-~~P~ILfIDEiDal~~~~~~ 280 (686)
+|||+|+||+|||++|+++|+.+|..|..|.+. ++......|.... ...|...+. --..|+++|||....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp---- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP---- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH----
Confidence 589999999999999999999999999988875 4432211110000 000000000 0024999999998754
Q ss_pred CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC-----CCccccccCCcc
Q 005643 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-----ELDLEFVRPGRI 336 (686)
Q Consensus 281 ~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-----~LD~aLlrpgRF 336 (686)
.+.+.||+.|....-.-....+....+++||||-|..+ .|++|++. ||
T Consensus 77 ------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 77 ------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 37889999998765554444566677899999999876 68888887 87
No 198
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.1e-09 Score=120.72 Aligned_cols=162 Identities=18% Similarity=0.249 Sum_probs=116.4
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEEe
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFAS 236 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~is 236 (686)
.-.++-|+|-+ ++++.++..|... ...+-+|.|+||+|||.++.-+|... +..+++++
T Consensus 166 ~gklDPvIGRd---~EI~r~iqIL~RR---------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRD---EEIRRTIQILSRR---------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChH---HHHHHHHHHHhcc---------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 34577788887 3444444444333 23457889999999999999998864 44577888
Q ss_pred Cccccch---hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 005643 237 GAEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (686)
Q Consensus 237 ~s~~~~~---~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (686)
.+.+... -|..+.+++.+.+..++..+.||||||||.+.+-....+. .-..-|-|--.|... .
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaLARG-------------e 299 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMDAANLLKPALARG-------------E 299 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccchhhhhHHHHhcC-------------C
Confidence 8777654 3678899999999999888999999999999765332221 122333333333321 2
Q ss_pred EEEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHH
Q 005643 314 VIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357 (686)
Q Consensus 314 ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~ 357 (686)
+-+|+||..-+ .-|+||-| || ..|.+.-|+.++-..||+-.
T Consensus 300 L~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 300 LRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred eEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHH
Confidence 67888886533 35899999 99 68999999999999999843
No 199
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.96 E-value=9.2e-09 Score=116.21 Aligned_cols=218 Identities=20% Similarity=0.222 Sum_probs=127.9
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC----------CeEEEeC
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL----------PFVFASG 237 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~----------~fi~is~ 237 (686)
.+|.++.|+..+++.+. +.+.....++|+||||+|||++++.+++...- .+.++.+
T Consensus 188 ~d~~~v~Gq~~~~~al~--------------laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLE--------------ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhh--------------eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 36777777664443321 11223468999999999999999999874321 1111111
Q ss_pred c----------cccch---------hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005643 238 A----------EFTDS---------EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (686)
Q Consensus 238 s----------~~~~~---------~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~ 298 (686)
. -|... .|.+...-...+..|. ..+|||||++.+. ..++..|++.|+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~~----------~~~~~~L~~~LE~ 320 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEFE----------RRTLDALREPIES 320 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhCC----------HHHHHHHHHHHHc
Confidence 1 01110 1111101112333332 3599999998873 2466777777754
Q ss_pred Ccc--cCCcccccccccEEEEEecCCCC---------------------CCccccccCCccceEEEeCCCCHHH------
Q 005643 299 DKE--RTGIDRFSLRQAVIFICATNRPD---------------------ELDLEFVRPGRIDRRLYIGLPDAKQ------ 349 (686)
Q Consensus 299 ~~~--~~~~~~~~~~~~ViVIaaTN~p~---------------------~LD~aLlrpgRFd~~I~v~~Pd~~e------ 349 (686)
..- ...........++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 321 g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~ 398 (506)
T PRK09862 321 GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVV 398 (506)
T ss_pred CcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccC
Confidence 331 11111122345689999999752 46778888 999999999885321
Q ss_pred ----HHHHHHHH--------hcCCCccccc----------------cHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Q 005643 350 ----RVQIFDVH--------SAGKQLAEDV----------------NFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS 401 (686)
Q Consensus 350 ----R~~Il~~~--------l~~~~l~~dv----------------dl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~ 401 (686)
...|-+.. .+...+...+ .+-+-+....|.|.+....+++-|...|.-++++
T Consensus 399 ~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~ 478 (506)
T PRK09862 399 PGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSD 478 (506)
T ss_pred CCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 11121100 0000000000 0111122356889999999999999999999999
Q ss_pred cccHHHHHHHHHH
Q 005643 402 KIQQQDIVDVLDK 414 (686)
Q Consensus 402 ~It~~dl~~Al~~ 414 (686)
.|+.+|+.+|+.-
T Consensus 479 ~V~~~hv~eAl~y 491 (506)
T PRK09862 479 IITRQHLQEAVSY 491 (506)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999863
No 200
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.91 E-value=8.3e-10 Score=110.31 Aligned_cols=127 Identities=23% Similarity=0.358 Sum_probs=68.2
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC----------CeEEEeC-
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL----------PFVFASG- 237 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~----------~fi~is~- 237 (686)
+|+||+|++.+|..|.-... | ..++||+||||||||++|+++..-+-- .+.++.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999888755432 2 358999999999999999999874310 0011111
Q ss_pred ---------ccccchhhhHHHHHHHHHH---------HHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005643 238 ---------AEFTDSEKSGAARINEMFS---------IARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (686)
Q Consensus 238 ---------s~~~~~~~~~~~~vr~lF~---------~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~ 299 (686)
.-|... ..+. ....++- .+..+ ..|||+||+-.+- ..+++.|+.-|+..
T Consensus 67 ~~~~~~~~~~Pfr~p-hhs~-s~~~liGgg~~~~PGeislAh-~GVLflDE~~ef~----------~~vld~Lr~ple~g 133 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAP-HHSA-SEAALIGGGRPPRPGEISLAH-RGVLFLDELNEFD----------RSVLDALRQPLEDG 133 (206)
T ss_dssp S---EEEE---EEEE--TT---HHHHHEEGGGEEE-CGGGGT-TSEEEECETTTS-----------HHHHHHHHHHHHHS
T ss_pred CCCCceecCCCcccC-CCCc-CHHHHhCCCcCCCcCHHHHhc-CCEEEechhhhcC----------HHHHHHHHHHHHCC
Confidence 001000 0000 0111111 11222 3699999998773 45888888888654
Q ss_pred cccC--CcccccccccEEEEEecCC
Q 005643 300 KERT--GIDRFSLRQAVIFICATNR 322 (686)
Q Consensus 300 ~~~~--~~~~~~~~~~ViVIaaTN~ 322 (686)
...- ......-+.++++|+|+|.
T Consensus 134 ~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 134 EVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp BEEEEETTEEEEEB--EEEEEEE-S
T ss_pred eEEEEECCceEEEecccEEEEEecc
Confidence 2211 1111233456899999986
No 201
>PRK08116 hypothetical protein; Validated
Probab=98.91 E-value=4.3e-09 Score=110.47 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=88.9
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccch
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS 243 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~ 243 (686)
..||++....+.....+.....+.++.. ... ..+.|++|+|+||||||+||.++|+++ +.++++++.+++...
T Consensus 81 ~~tFdnf~~~~~~~~a~~~a~~y~~~~~---~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKKFE---EMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred hcchhcccCChHHHHHHHHHHHHHHHHH---hhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3567766544444444444444544322 111 234689999999999999999999975 889999998887654
Q ss_pred hhhHH-----HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 244 EKSGA-----ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 244 ~~~~~-----~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
..... .....+++... ...+|+|||+.... ..+. ....|...++..... +..+|.
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~-----~t~~---~~~~l~~iin~r~~~----------~~~~Ii 216 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER-----DTEW---AREKVYNIIDSRYRK----------GLPTIV 216 (268)
T ss_pred HHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-----CCHH---HHHHHHHHHHHHHHC----------CCCEEE
Confidence 32110 11223333332 33599999996431 1222 233344444432111 135777
Q ss_pred ecCCC-CC----CccccccCCcc---ceEEEeCCCCH
Q 005643 319 ATNRP-DE----LDLEFVRPGRI---DRRLYIGLPDA 347 (686)
Q Consensus 319 aTN~p-~~----LD~aLlrpgRF---d~~I~v~~Pd~ 347 (686)
|||.+ +. ++..+.+ |+ ...|.+.-||.
T Consensus 217 TsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 217 TTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 88875 22 4566666 64 33566666764
No 202
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.90 E-value=1.1e-08 Score=100.12 Aligned_cols=118 Identities=24% Similarity=0.306 Sum_probs=72.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhH-------------HHHHHHHHHHHHhcCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG-------------AARINEMFSIARRNAPAFV 266 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~-------------~~~vr~lF~~Ak~~~P~IL 266 (686)
.+..|||+|++||||+++|++|-+.. +.||+.++|+.+....... ......+|+.|. ..+|
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~---~GtL 97 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQAN---GGTL 97 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTT---TSEE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeecc---ceEE
Confidence 34789999999999999999997754 5799999999885432110 001124555554 3589
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCcc
Q 005643 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRI 336 (686)
Q Consensus 267 fIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRF 336 (686)
|||||+.+.. .....|+..|+...-....+......++.||+||+. .|...+. .|+|
T Consensus 98 ~Ld~I~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~-~g~f 154 (168)
T PF00158_consen 98 FLDEIEDLPP----------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVE-QGRF 154 (168)
T ss_dssp EEETGGGS-H----------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHH-TTSS
T ss_pred eecchhhhHH----------HHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHH-cCCC
Confidence 9999999953 356677777764322211111223446999999985 3444333 3666
No 203
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.89 E-value=2.4e-08 Score=108.20 Aligned_cols=168 Identities=22% Similarity=0.265 Sum_probs=107.0
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeC---------
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG--------- 237 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~--------- 237 (686)
...|.-++|++..|..|-- + ..+| .-.|+|+.|+.|||||+++||||.-+.---+.+.|
T Consensus 13 ~~pf~aivGqd~lk~aL~l--~-av~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGL--N-AVDP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhh--h-hccc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4678899999988776522 1 2233 34689999999999999999999865211111111
Q ss_pred ----c-------------------cccch-hhhHHHH------HHHH-------HH---HHHhcCCeEEEEccchhhhcc
Q 005643 238 ----A-------------------EFTDS-EKSGAAR------INEM-------FS---IARRNAPAFVFVDEIDAIAGR 277 (686)
Q Consensus 238 ----s-------------------~~~~~-~~~~~~~------vr~l-------F~---~Ak~~~P~ILfIDEiDal~~~ 277 (686)
. .++.. .+.++.+ +... |. .|+.+ ..|+++||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc--
Confidence 0 01111 1222221 1111 11 22233 3699999998884
Q ss_pred CCCCChhHHHHHHHHHHHhcCCcccC--CcccccccccEEEEEecCCCC-CCccccccCCccceEEEeCCC-CHHHHHHH
Q 005643 278 HARKDPRRRATFEALIAQLDGDKERT--GIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLP-DAKQRVQI 353 (686)
Q Consensus 278 ~~~~~~e~~~~l~~LL~~ld~~~~~~--~~~~~~~~~~ViVIaaTN~p~-~LD~aLlrpgRFd~~I~v~~P-d~~eR~~I 353 (686)
+..++.||..+....+.. .+..+.-+.++++|+|.|.-+ .|-|.|+. ||...|.+..| +.++|.+|
T Consensus 158 --------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 158 --------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred --------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHH
Confidence 457888888886632111 112234456799999999754 67788888 99999999776 68899999
Q ss_pred HHHHhc
Q 005643 354 FDVHSA 359 (686)
Q Consensus 354 l~~~l~ 359 (686)
.+..+.
T Consensus 228 i~r~~~ 233 (423)
T COG1239 228 IRRRLA 233 (423)
T ss_pred HHHHHH
Confidence 876543
No 204
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.89 E-value=6.1e-08 Score=100.10 Aligned_cols=91 Identities=11% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccc-cHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Q 005643 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-NFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS 401 (686)
Q Consensus 323 p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~ 401 (686)
|.-+|-.|+. |+ ..|...+++.++..+||+..+......-+. .+..|.......|-+---+|+..|.+.|.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4556666776 66 578888899999999999888765443222 2455555555566677778999999999999888
Q ss_pred cccHHHHHHHHHHHH
Q 005643 402 KIQQQDIVDVLDKQL 416 (686)
Q Consensus 402 ~It~~dl~~Al~~~~ 416 (686)
.+..+|+..+..--+
T Consensus 416 ~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFL 430 (454)
T ss_pred eeehhHHHHHHHHHh
Confidence 899999988766443
No 205
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.87 E-value=3.1e-08 Score=117.01 Aligned_cols=137 Identities=16% Similarity=0.140 Sum_probs=80.6
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhC-------CCeEEEeCccccchhh--hHHHHH-HHHHHHHHhcCCeEEEEccc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESG-------LPFVFASGAEFTDSEK--SGAARI-NEMFSIARRNAPAFVFVDEI 271 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g-------~~fi~is~s~~~~~~~--~~~~~v-r~lF~~Ak~~~P~ILfIDEi 271 (686)
+...+|||+|+||||||.+|+++++-+. .++..+.+..+..... .+...+ ...+.. ....++||||+
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvl---AdgGtL~IDEi 566 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVL---ANGGVCCIDEL 566 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEE---cCCCeEEecch
Confidence 4456899999999999999999988543 3444433333211000 000000 001111 12359999999
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHhcCCcc--cCCcccccccccEEEEEecCCCC-------------CCccccccCCcc
Q 005643 272 DAIAGRHARKDPRRRATFEALIAQLDGDKE--RTGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRI 336 (686)
Q Consensus 272 Dal~~~~~~~~~e~~~~l~~LL~~ld~~~~--~~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRF 336 (686)
|.+.. .....|++.|+...- ...+.....+..+.||||+|... .|+++|++ ||
T Consensus 567 dkms~----------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RF 634 (915)
T PTZ00111 567 DKCHN----------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RF 634 (915)
T ss_pred hhCCH----------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hh
Confidence 99842 245667777755321 11111123345689999999842 47899999 99
Q ss_pred ceEEE-eCCCCHHHHHHH
Q 005643 337 DRRLY-IGLPDAKQRVQI 353 (686)
Q Consensus 337 d~~I~-v~~Pd~~eR~~I 353 (686)
|.... ++.|+.+.=..|
T Consensus 635 DLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred cEEEEecCCCChHHHHHH
Confidence 97544 466776554443
No 206
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=5e-09 Score=112.69 Aligned_cols=141 Identities=30% Similarity=0.425 Sum_probs=90.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh--hh-HHHHHHHHHHHHH----hcCCeEEEEccchhhhcc
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE--KS-GAARINEMFSIAR----RNAPAFVFVDEIDAIAGR 277 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~--~~-~~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~ 277 (686)
.+|||.||.|+|||+||+.+|+-+++||..++|..+.... |+ -+..+..++..|. +.+..|+||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 5799999999999999999999999999999999998763 32 2445666666543 233579999999999744
Q ss_pred CCC----CChhHHHHHHHHHHHhcCCcccCCcccc--cccccEEEEEecCC-------CCCCccccccCCcc-ceEEEeC
Q 005643 278 HAR----KDPRRRATFEALIAQLDGDKERTGIDRF--SLRQAVIFICATNR-------PDELDLEFVRPGRI-DRRLYIG 343 (686)
Q Consensus 278 ~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~--~~~~~ViVIaaTN~-------p~~LD~aLlrpgRF-d~~I~v~ 343 (686)
..+ .+-..+.....||..++|..-+-+.... ..+...+.|=|||- -..||.-+-| |. |..+-|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGFg 384 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGFG 384 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhcccC
Confidence 322 1223455777888888875433221111 22222333333332 2345655555 55 3355555
Q ss_pred CCCH
Q 005643 344 LPDA 347 (686)
Q Consensus 344 ~Pd~ 347 (686)
.|+-
T Consensus 385 ~~s~ 388 (564)
T KOG0745|consen 385 APSS 388 (564)
T ss_pred CCCC
Confidence 5543
No 207
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.84 E-value=2.1e-08 Score=112.64 Aligned_cols=211 Identities=19% Similarity=0.191 Sum_probs=121.0
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhh
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK 245 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~ 245 (686)
.|.+++|.....+.+.+.+..+. .....++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45667777644443333332221 234579999999999999999997654 56999999998854311
Q ss_pred hHH-------------HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 246 SGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 246 ~~~-------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
... ......|.. ....+||||||+.+.. .....|+..++.............+.
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~~----------~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLPL----------NLQAKLLRFLQERVIERLGGREEIPV 273 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCCH----------HHHHHHHHHHhhCeEEeCCCCceeee
Confidence 100 000111222 2346899999999953 24556666665432111101112234
Q ss_pred cEEEEEecCCCC-------CCccccccCCccceEEEeCCCCHHHHHH----HHHHHhcC------CC--ccccccHHHHH
Q 005643 313 AVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSAG------KQ--LAEDVNFEELV 373 (686)
Q Consensus 313 ~ViVIaaTN~p~-------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~----Il~~~l~~------~~--l~~dvdl~~La 373 (686)
++.+|+||+..- .+.+.|.. |+ ..+.+..|...+|.+ +++.++.. .. --.+.-+..|.
T Consensus 274 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (445)
T TIGR02915 274 DVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALE 350 (445)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 588999987642 23333333 44 246777888888764 33333221 11 11122356666
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005643 374 FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (686)
Q Consensus 374 ~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 408 (686)
...---+.++|+++++.|+..+ ....|+.+++
T Consensus 351 ~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 351 AHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 6654557789999999888654 2345776665
No 208
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.81 E-value=4.7e-08 Score=102.12 Aligned_cols=191 Identities=19% Similarity=0.191 Sum_probs=123.3
Q ss_pred ccCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCe------EEEe
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF------VFAS 236 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~f------i~is 236 (686)
++.++.+..||++++++...+.++.+.-+. | +.|+|||||||||....+.|..+-.|. ..++
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~~~~~l-----------P-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYSGMPGL-----------P-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhccCCCC-----------C-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 467788999999999888887776333222 2 899999999999999999999876641 1112
Q ss_pred CccccchhhhHHHHHHHHHHHHHh-------cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccc
Q 005643 237 GAEFTDSEKSGAARINEMFSIARR-------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFS 309 (686)
Q Consensus 237 ~s~~~~~~~~~~~~vr~lF~~Ak~-------~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~ 309 (686)
.++-... ...+.--..|..++. ..+..+++||.|++. ....|+|-..+..+..+
T Consensus 101 aSd~rgi--d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT----------~~AQnALRRviek~t~n------- 161 (360)
T KOG0990|consen 101 ASDDRGI--DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT----------RDAQNALRRVIEKYTAN------- 161 (360)
T ss_pred ccCccCC--cchHHHHHHHHhhccceeccccCceeEEEecchhHhh----------HHHHHHHHHHHHHhccc-------
Confidence 2211110 111122345555553 267899999999995 23556676666655443
Q ss_pred ccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcccccc-HHHHHHhccCCCHHHHHHHH
Q 005643 310 LRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN-FEELVFRTVGFSGADIRNLV 388 (686)
Q Consensus 310 ~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~La~~t~G~sgadL~~lv 388 (686)
+.++.-+|.+..+-|++++ ||. .+.+.+-+...-...+.+++...+.....+ ...++.. +-.|++..+
T Consensus 162 ----~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~gDmr~a~ 230 (360)
T KOG0990|consen 162 ----TRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SVGDMRVAL 230 (360)
T ss_pred ----eEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hHHHHHHHH
Confidence 4566678999999999998 884 456666677777777777776554433222 2334443 344676666
Q ss_pred HHHHHHH
Q 005643 389 NESGIMS 395 (686)
Q Consensus 389 ~eA~~~A 395 (686)
|.....+
T Consensus 231 n~Lqs~~ 237 (360)
T KOG0990|consen 231 NYLQSIL 237 (360)
T ss_pred HHHHHHH
Confidence 6544333
No 209
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.80 E-value=4.4e-08 Score=95.21 Aligned_cols=118 Identities=20% Similarity=0.312 Sum_probs=79.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------CeEEEeCccccchhhhHHHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-----------------------PFVFASGAEFTDSEKSGAARINEMFSIA 258 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~-----------------------~fi~is~s~~~~~~~~~~~~vr~lF~~A 258 (686)
+.|..+||+||+|+||+++|+++|+.+-. .++.++...... .-..+.++.+...+
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~--~i~i~~ir~i~~~~ 94 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK--SIKIDQIREIIEFL 94 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS--SBSHHHHHHHHHHC
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc--hhhHHHHHHHHHHH
Confidence 56788999999999999999999987632 123332222111 11335566666654
Q ss_pred Hh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCC
Q 005643 259 RR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPG 334 (686)
Q Consensus 259 k~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpg 334 (686)
.. ....|++|||+|.+. ....|.||..|+.... ++++|.+|+.++.|-+.+++
T Consensus 95 ~~~~~~~~~KviiI~~ad~l~----------~~a~NaLLK~LEepp~-----------~~~fiL~t~~~~~il~TI~S-- 151 (162)
T PF13177_consen 95 SLSPSEGKYKVIIIDEADKLT----------EEAQNALLKTLEEPPE-----------NTYFILITNNPSKILPTIRS-- 151 (162)
T ss_dssp TSS-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHSTTT-----------TEEEEEEES-GGGS-HHHHT--
T ss_pred HHHHhcCCceEEEeehHhhhh----------HHHHHHHHHHhcCCCC-----------CEEEEEEECChHHChHHHHh--
Confidence 43 335799999999994 4578999999988654 37889999999999999999
Q ss_pred ccceEEEeCCC
Q 005643 335 RIDRRLYIGLP 345 (686)
Q Consensus 335 RFd~~I~v~~P 345 (686)
|+ ..+.|++.
T Consensus 152 Rc-~~i~~~~l 161 (162)
T PF13177_consen 152 RC-QVIRFRPL 161 (162)
T ss_dssp TS-EEEEE---
T ss_pred hc-eEEecCCC
Confidence 88 56776553
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=6.1e-08 Score=104.87 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=96.9
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCCCe-------------------------EEEeCcccc--------------
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-------------------------VFASGAEFT-------------- 241 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~f-------------------------i~is~s~~~-------------- 241 (686)
.+.|.++||+||+|+||+++|+++|+.+.+.- ..+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 36889999999999999999999998774421 111111000
Q ss_pred --ch--------hhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005643 242 --DS--------EKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (686)
Q Consensus 242 --~~--------~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~ 307 (686)
.. ..-+.+.+|.+.+.+.. ....|++||++|.+. ....|.||..|++...
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~------ 161 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN----------VAAANALLKTLEEPPP------ 161 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC----------HHHHHHHHHHhcCCCc------
Confidence 00 01123456666655432 234699999999994 3578999999987443
Q ss_pred ccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHH
Q 005643 308 FSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357 (686)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~ 357 (686)
++++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 162 -----~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 162 -----GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred -----CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 47899999999999999999 99 78999999999998888654
No 211
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.79 E-value=1.4e-07 Score=107.20 Aligned_cols=193 Identities=17% Similarity=0.274 Sum_probs=122.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEEeCccccchhh--h---------------HHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES----------GLPFVFASGAEFTDSEK--S---------------GAARINEMFSI 257 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~is~s~~~~~~~--~---------------~~~~vr~lF~~ 257 (686)
..+.++|-||||||.+++.+-.++ ..+++.|++-.+.+... . +...+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 368899999999999999997754 34688888887765411 1 11223333432
Q ss_pred HH-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCcccccc---C
Q 005643 258 AR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR---P 333 (686)
Q Consensus 258 Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlr---p 333 (686)
.+ ...+|||+|||+|.|..++ +.++..++.+-.- ....++||+-.|..+. +..++- .
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~-------QdVlYn~fdWpt~-----------~~sKLvvi~IaNTmdl-PEr~l~nrvs 563 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRS-------QDVLYNIFDWPTL-----------KNSKLVVIAIANTMDL-PERLLMNRVS 563 (767)
T ss_pred CCCCCCCEEEEeccHHHHhccc-------HHHHHHHhcCCcC-----------CCCceEEEEecccccC-HHHHhccchh
Confidence 22 2457999999999998652 3344444443221 1234677777776442 333321 1
Q ss_pred Cccc-eEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhCC-------Ccc
Q 005643 334 GRID-RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSG--ADIRNLVNESGIMSVRKGH-------SKI 403 (686)
Q Consensus 334 gRFd-~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sg--adL~~lv~eA~~~A~r~~~-------~~I 403 (686)
.|++ +.|.|.+++..+..+|+...+.+...-..--.+-+|+.-...|| +..-.+|++|...|-.+.. ..|
T Consensus 564 SRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v 643 (767)
T KOG1514|consen 564 SRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLV 643 (767)
T ss_pred hhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhccccccccccee
Confidence 2553 47999999999999999988876633222223333444344444 3455778888888866544 457
Q ss_pred cHHHHHHHHHHHH
Q 005643 404 QQQDIVDVLDKQL 416 (686)
Q Consensus 404 t~~dl~~Al~~~~ 416 (686)
+..|+.+|+..++
T Consensus 644 ~~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 644 GILHVMEAINEML 656 (767)
T ss_pred ehHHHHHHHHHHh
Confidence 8889999988775
No 212
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.79 E-value=5.9e-08 Score=109.71 Aligned_cols=210 Identities=17% Similarity=0.166 Sum_probs=123.6
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhh
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK 245 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~ 245 (686)
.|.+++|.....+.+.+.+..+ ......+|+.|++|||||++|+++.... +.||+.++|+.+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4667888765444333333221 1234579999999999999999998765 57999999998754211
Q ss_pred hHHHHHHHHHHHH---------------HhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccc
Q 005643 246 SGAARINEMFSIA---------------RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSL 310 (686)
Q Consensus 246 ~~~~~vr~lF~~A---------------k~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~ 310 (686)
-..+|... .......|||||+|.+.. .....|+..++.............
T Consensus 206 -----~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~----------~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 206 -----ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL----------DVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred -----HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH----------HHHHHHHHHHhcCcEEeCCCCCeE
Confidence 11222111 011245799999999953 244566666654322111111122
Q ss_pred cccEEEEEecCCCC-------CCccccccCCccceEEEeCCCCHHHHHH----HHHHHhcC------CCc--cccccHHH
Q 005643 311 RQAVIFICATNRPD-------ELDLEFVRPGRIDRRLYIGLPDAKQRVQ----IFDVHSAG------KQL--AEDVNFEE 371 (686)
Q Consensus 311 ~~~ViVIaaTN~p~-------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~----Il~~~l~~------~~l--~~dvdl~~ 371 (686)
..++.+|+||+..- .+.+.|.. ||. .+.+..|...+|.+ +++.++.. ... ..+..+..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 34588999997631 23344444 552 46666777666643 44444321 111 11223566
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHH
Q 005643 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIV 409 (686)
Q Consensus 372 La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 409 (686)
|....---+.++|+++++.+...+ ....|+.+|+.
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~ 382 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLP 382 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 666665567889999999888765 23467777764
No 213
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.77 E-value=5.4e-08 Score=112.93 Aligned_cols=102 Identities=16% Similarity=0.262 Sum_probs=65.7
Q ss_pred cccEEEEEecCCC--CCCccccccCCccc---eEEEeCC--C-CHHHHHHHHHHHhcCCC---cccccc---HHHHHH--
Q 005643 311 RQAVIFICATNRP--DELDLEFVRPGRID---RRLYIGL--P-DAKQRVQIFDVHSAGKQ---LAEDVN---FEELVF-- 374 (686)
Q Consensus 311 ~~~ViVIaaTN~p--~~LD~aLlrpgRFd---~~I~v~~--P-d~~eR~~Il~~~l~~~~---l~~dvd---l~~La~-- 374 (686)
+.++.||+++|+. ..+||+|.. ||. ..+.+.. + +.+.+..+++...+... ....++ +..|.+
T Consensus 275 p~dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~ 352 (637)
T PRK13765 275 PCDFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREA 352 (637)
T ss_pred eeeeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHH
Confidence 3468899999884 467899988 885 4555542 2 35556666653332110 111222 222222
Q ss_pred -hccC------CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 375 -RTVG------FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 375 -~t~G------~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
+..| ...++|.+++++|...|..++...++.+|+.+|+++
T Consensus 353 ~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 353 KRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 2222 336899999999999999999999999999988864
No 214
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.75 E-value=1.4e-07 Score=106.27 Aligned_cols=187 Identities=20% Similarity=0.248 Sum_probs=110.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchhhhHH-------------HHHHHHHHHHHhcCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKSGA-------------ARINEMFSIARRNAPAFVF 267 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~~~~~-------------~~vr~lF~~Ak~~~P~ILf 267 (686)
...+|++|++||||+++|+++... .+.||+.++|..+.+...... ......|..| ...+||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEE
Confidence 357999999999999999999765 457999999998754311000 0000112222 246899
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccce-------EE
Q 005643 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RL 340 (686)
Q Consensus 268 IDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I 340 (686)
|||||.+.. .....|+..++...............++.+|+|||..- . .+.+.|+|.. .+
T Consensus 243 ld~i~~l~~----------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l--~-~~~~~g~~~~~l~~~l~~~ 309 (457)
T PRK11361 243 LDEIGEMPL----------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL--Q-AMVKEGTFREDLFYRLNVI 309 (457)
T ss_pred EechhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccc
Confidence 999999953 24566777665432111111112234588999998632 1 2223344432 56
Q ss_pred EeCCCCHHHHHH----HHHHHhcC------CC--ccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005643 341 YIGLPDAKQRVQ----IFDVHSAG------KQ--LAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (686)
Q Consensus 341 ~v~~Pd~~eR~~----Il~~~l~~------~~--l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 408 (686)
.+..|...+|.+ +++.++.. .. --.+..+..|.....--+.++|+++++.|...+ ....|+.+|+
T Consensus 310 ~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l 386 (457)
T PRK11361 310 HLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDL 386 (457)
T ss_pred eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHC
Confidence 788888888754 22223221 11 011223456666555557889999999887654 3346777776
Q ss_pred H
Q 005643 409 V 409 (686)
Q Consensus 409 ~ 409 (686)
.
T Consensus 387 ~ 387 (457)
T PRK11361 387 P 387 (457)
T ss_pred h
Confidence 4
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.74 E-value=7.9e-08 Score=99.42 Aligned_cols=117 Identities=15% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCcccccceecC-cccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 165 DTKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 165 ~~~~~f~dvvG~-~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
....+|++.... +..+..+..+..+.++.. ....+++|+|+||||||+|+.++|.++ |..+++++..++
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 346788888644 344456666666664431 123589999999999999999999987 788999988887
Q ss_pred cchhhhH----HHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 241 TDSEKSG----AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 241 ~~~~~~~----~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
....... ......+++... ...+|+|||++... ..+.....+.++++.
T Consensus 139 ~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-----~s~~~~~~l~~Ii~~ 190 (244)
T PRK07952 139 MSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-----ESRYEKVIINQIVDR 190 (244)
T ss_pred HHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC-----CCHHHHHHHHHHHHH
Confidence 7643221 112234444433 45799999998763 223334456666654
No 216
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=3.7e-07 Score=98.00 Aligned_cols=131 Identities=24% Similarity=0.310 Sum_probs=93.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCC---------------------eEEEe--Cccccch--hhhHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP---------------------FVFAS--GAEFTDS--EKSGAARINEMFS 256 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~---------------------fi~is--~s~~~~~--~~~~~~~vr~lF~ 256 (686)
+.|.++||+||+|+||+++|.++|..+.+. +..+. ...-... ..-+.+.+|++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 577899999999999999999999866331 11111 0000000 0113455777666
Q ss_pred HHHhc----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCcccccc
Q 005643 257 IARRN----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR 332 (686)
Q Consensus 257 ~Ak~~----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlr 332 (686)
.+... ...|++||++|.+. ....|.||+.|+....+ +++|.+|+.++.|.|.+++
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~~-----------~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN----------RAACNALLKTLEEPSPG-----------RYLWLISAQPARLPATIRS 162 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC----------HHHHHHHHHHhhCCCCC-----------CeEEEEECChhhCchHHHh
Confidence 55432 23699999999994 34779999999885443 5788888999999999999
Q ss_pred CCccceEEEeCCCCHHHHHHHHHH
Q 005643 333 PGRIDRRLYIGLPDAKQRVQIFDV 356 (686)
Q Consensus 333 pgRFd~~I~v~~Pd~~eR~~Il~~ 356 (686)
|+ ..+.|+.|+.++-.+.|..
T Consensus 163 --RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 163 --RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred --hh-eEeeCCCcCHHHHHHHHHH
Confidence 98 6889999999888877763
No 217
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.6e-08 Score=108.28 Aligned_cols=219 Identities=19% Similarity=0.282 Sum_probs=124.8
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC---------C-CeEEEe
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---------L-PFVFAS 236 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g---------~-~fi~is 236 (686)
..+|.||+|++.+|..+.... ....++|++||||||||++|+.+..-+- + .+.+++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 348999999999999876532 2356899999999999999999854220 0 011111
Q ss_pred Cc-----------cccchhhhHHHHHHHHHHHHH--------hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005643 237 GA-----------EFTDSEKSGAARINEMFSIAR--------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (686)
Q Consensus 237 ~s-----------~~~~~~~~~~~~vr~lF~~Ak--------~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld 297 (686)
+. -|... +.++ ....+.---. .....||||||+-.+- .++++.|.+-|+
T Consensus 241 g~~~~~~~~~~~rPFr~P-HHsa-S~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~----------~~iLe~LR~PLE 308 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAP-HHSA-SLAALVGGGGVPRPGEISLAHNGVLFLDELPEFK----------RSILEALREPLE 308 (490)
T ss_pred ccccccCccceeCCccCC-Cccc-hHHHHhCCCCCCCCCceeeecCCEEEeeccchhh----------HHHHHHHhCccc
Confidence 10 01100 0000 0111110000 1113699999997662 357777777665
Q ss_pred CCcccCC--cccccccccEEEEEecCCCC-----------------------CCccccccCCccceEEEeCCCCHHHHH-
Q 005643 298 GDKERTG--IDRFSLRQAVIFICATNRPD-----------------------ELDLEFVRPGRIDRRLYIGLPDAKQRV- 351 (686)
Q Consensus 298 ~~~~~~~--~~~~~~~~~ViVIaaTN~p~-----------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~- 351 (686)
.....-. .....-...+.+|+|+|..- .|...|++ |||..+.++.++..++.
T Consensus 309 ~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~~~ 386 (490)
T COG0606 309 NGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGELIR 386 (490)
T ss_pred cCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHhhc
Confidence 4322110 01122234588899998631 23445666 99999999887644331
Q ss_pred -------------HHHHHH----hcCCCc--c----------------ccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 352 -------------QIFDVH----SAGKQL--A----------------EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 352 -------------~Il~~~----l~~~~l--~----------------~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
.+++.+ .+...+ . .+.++.+.+-...++|.+....+++-|.-.|-
T Consensus 387 ~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiAD 466 (490)
T COG0606 387 QVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIAD 466 (490)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhc
Confidence 122111 011111 1 11223334445567788888888888887777
Q ss_pred HhCCCcccHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~ 413 (686)
-++...|...++.+|+.
T Consensus 467 L~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 467 LEGSEQIERSHLAEAIS 483 (490)
T ss_pred ccCcchhhHHHHHHHHh
Confidence 77888888888887775
No 218
>PRK08181 transposase; Validated
Probab=98.72 E-value=9.1e-08 Score=100.38 Aligned_cols=86 Identities=17% Similarity=0.332 Sum_probs=58.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhHH--HHHHHHHHHHHhcCCeEEEEccchhhhccC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA--ARINEMFSIARRNAPAFVFVDEIDAIAGRH 278 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~~--~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~ 278 (686)
..+++|+||||||||+||.+++.++ |..+++++..++........ ......+.... .+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC--
Confidence 3589999999999999999998754 78899999888776532221 12333444433 457999999987742
Q ss_pred CCCChhHHHHHHHHHHHh
Q 005643 279 ARKDPRRRATFEALIAQL 296 (686)
Q Consensus 279 ~~~~~e~~~~l~~LL~~l 296 (686)
+......+.++++..
T Consensus 182 ---~~~~~~~Lf~lin~R 196 (269)
T PRK08181 182 ---DQAETSVLFELISAR 196 (269)
T ss_pred ---CHHHHHHHHHHHHHH
Confidence 233334555555544
No 219
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=4.9e-07 Score=97.24 Aligned_cols=132 Identities=15% Similarity=0.231 Sum_probs=95.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCe--EEEeCc--------------cc--cc---hhhhHHHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPF--VFASGA--------------EF--TD---SEKSGAARINEMFSIARR 260 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~f--i~is~s--------------~~--~~---~~~~~~~~vr~lF~~Ak~ 260 (686)
+.|.++||+||+|+||+++|+++|+.+.+.- -.-.|. ++ .. ...-+.+.+|++-+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 5678999999999999999999998764310 000111 11 11 011234556666555433
Q ss_pred ----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCcc
Q 005643 261 ----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRI 336 (686)
Q Consensus 261 ----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRF 336 (686)
....|++||++|.+. ....|.||..|+.... ++++|.+|+.++.|.|.+++ |+
T Consensus 102 ~~~~g~~KV~iI~~a~~m~----------~~AaNaLLKtLEEPp~-----------~~~fiL~t~~~~~llpTI~S--RC 158 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLT----------EAAANALLKTLEEPRP-----------NTYFLLQADLSAALLPTIYS--RC 158 (325)
T ss_pred ccccCCceEEEEechhhhC----------HHHHHHHHHHhcCCCC-----------CeEEEEEECChHhCchHHHh--hc
Confidence 334699999999994 3477999999988543 37888899999999999999 88
Q ss_pred ceEEEeCCCCHHHHHHHHHHH
Q 005643 337 DRRLYIGLPDAKQRVQIFDVH 357 (686)
Q Consensus 337 d~~I~v~~Pd~~eR~~Il~~~ 357 (686)
..+.|++|+.++..+.|...
T Consensus 159 -~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 159 -QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -eEEeCCCCCHHHHHHHHHHH
Confidence 68899999999888887754
No 220
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.69 E-value=7.7e-08 Score=102.87 Aligned_cols=101 Identities=21% Similarity=0.308 Sum_probs=65.9
Q ss_pred cccccceecCc-ccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccc
Q 005643 167 KSMYKEVVLGG-DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (686)
Q Consensus 167 ~~~f~dvvG~~-e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~ 242 (686)
..+|+++...+ +.+..+.....|+.+.. . .+..+|++|+||||||||+||.|+|+++ |.++.+++.++|..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~---~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYP---P--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhh---c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35677775444 23334444455554331 1 1246899999999999999999999987 78888888888765
Q ss_pred hhhhH--HHHHHHHHHHHHhcCCeEEEEccchhh
Q 005643 243 SEKSG--AARINEMFSIARRNAPAFVFVDEIDAI 274 (686)
Q Consensus 243 ~~~~~--~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (686)
..... ...+...++..+ ...+|+|||+.+-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 53221 112334444443 3469999999765
No 221
>PRK12377 putative replication protein; Provisional
Probab=98.69 E-value=1.3e-07 Score=98.08 Aligned_cols=117 Identities=14% Similarity=0.190 Sum_probs=70.8
Q ss_pred CCcccccceecC-cccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 165 DTKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 165 ~~~~~f~dvvG~-~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
....+|++.... +..+..+..+..+..+.. ....+++|+||||||||+||.|+|+++ |..+++++..++
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~-------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l 140 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELM-------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV 140 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHH-------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH
Confidence 345678887543 233334444444433321 124689999999999999999999876 678888888887
Q ss_pred cchhhhHHH---HHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 241 TDSEKSGAA---RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 241 ~~~~~~~~~---~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
......... ....+++.. ....+|+|||++.... +......+.++++.
T Consensus 141 ~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~-----s~~~~~~l~~ii~~ 191 (248)
T PRK12377 141 MSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE-----TKNEQVVLNQIIDR 191 (248)
T ss_pred HHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-----CHHHHHHHHHHHHH
Confidence 765322111 122333333 3457999999976531 22334455555544
No 222
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=4.4e-07 Score=98.22 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=94.2
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------------------eEEEeCccccchhhhHHHHHHHHHH
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFS 256 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------------------fi~is~s~~~~~~~~~~~~vr~lF~ 256 (686)
.+.|.++||+||+|+||+++|.++|..+-+. +..+.... ....-+.+.+|.+-+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~~I~idqiR~l~~ 98 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK--GKSSLGVDAVREVTE 98 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc--ccccCCHHHHHHHHH
Confidence 3678899999999999999999999876331 11121100 000122445666555
Q ss_pred HHH----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCcccccc
Q 005643 257 IAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVR 332 (686)
Q Consensus 257 ~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlr 332 (686)
.+. .....|++||++|.+. ....|.||+.|++... ++++|..|+.++.|.|.+++
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~-----------~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT----------DAAANALLKTLEEPPE-----------NTWFFLACREPARLLATLRS 157 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC----------HHHHHHHHHHhcCCCC-----------CeEEEEEECChhhChHHHHh
Confidence 443 3345799999999994 4578999999988543 36888899999999999999
Q ss_pred CCccceEEEeCCCCHHHHHHHHHH
Q 005643 333 PGRIDRRLYIGLPDAKQRVQIFDV 356 (686)
Q Consensus 333 pgRFd~~I~v~~Pd~~eR~~Il~~ 356 (686)
|+. .+.|++|+.++..+.|..
T Consensus 158 --RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 158 --RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred --ccc-cccCCCCCHHHHHHHHHH
Confidence 884 689999999888877753
No 223
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.69 E-value=3.1e-07 Score=105.91 Aligned_cols=201 Identities=12% Similarity=0.083 Sum_probs=134.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CCeEEEeCccccch-hhhHHHHHHHHHHHHH---------hcCCeEEEEccch
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDS-EKSGAARINEMFSIAR---------RNAPAFVFVDEID 272 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g--~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak---------~~~P~ILfIDEiD 272 (686)
.||+|.|++|||||+++++++.-+. .||+.+..+.-... .|.+ .+......-+ .....||||||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 6899999999999999999998864 48876654443333 2221 1111111111 1123699999999
Q ss_pred hhhccCCCCChhHHHHHHHHHHHhcCCcccC--CcccccccccEEEEEecCCC---CCCccccccCCccceEEEeCCCCH
Q 005643 273 AIAGRHARKDPRRRATFEALIAQLDGDKERT--GIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDRRLYIGLPDA 347 (686)
Q Consensus 273 al~~~~~~~~~e~~~~l~~LL~~ld~~~~~~--~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRFd~~I~v~~Pd~ 347 (686)
.+. ..+++.|+..|+.....- ....+.-+.++++|++-|.. ..|.++++. ||+.++.++.|+.
T Consensus 104 ~~~----------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~ 171 (584)
T PRK13406 104 RLE----------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLAL 171 (584)
T ss_pred cCC----------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCCh
Confidence 884 358899999998643322 12223445678999974432 358899998 9999999998875
Q ss_pred HHH-------HHHHHH--HhcCCCccccccHHHHHHh--ccCC-CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 348 KQR-------VQIFDV--HSAGKQLAEDVNFEELVFR--TVGF-SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 348 ~eR-------~~Il~~--~l~~~~l~~dvdl~~La~~--t~G~-sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
.+. ..|... .+.+..+... .+..++.. ..|. |.+--..+++-|...|.-+|+..|+.+|+.+|+.-+
T Consensus 172 ~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 172 RDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLV 250 (584)
T ss_pred HHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 532 233332 2233333322 23333322 3465 778888899999999999999999999999999998
Q ss_pred HHhcc
Q 005643 416 LLEGM 420 (686)
Q Consensus 416 ~~~~~ 420 (686)
+.++.
T Consensus 251 L~hR~ 255 (584)
T PRK13406 251 LAPRA 255 (584)
T ss_pred HHhhc
Confidence 87765
No 224
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.8e-08 Score=113.54 Aligned_cols=138 Identities=20% Similarity=0.226 Sum_probs=102.5
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccch-----
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS----- 243 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~----- 243 (686)
.|+||+++...+.+.+.--+.... +. +++..+||.||.|+|||-||+++|... .-.++.+++++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~--~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLK--DP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccC--CC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 467888776666666554333210 00 467789999999999999999999976 347899999986552
Q ss_pred ---hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 244 ---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 244 ---~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
...|......+.+..+....+||+|||||.-. ...++.|+..+|...-..+.++.....++|||.|+
T Consensus 639 sp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh----------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH----------PDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred CCcccccchhHHHHHHHHhcCCceEEEEechhhcC----------HHHHHHHHHHHhcCccccCCCcEeeccceEEEEec
Confidence 11344456688888888888999999999764 34778888889887766666666666789999999
Q ss_pred CCC
Q 005643 321 NRP 323 (686)
Q Consensus 321 N~p 323 (686)
|.-
T Consensus 709 n~~ 711 (898)
T KOG1051|consen 709 NVG 711 (898)
T ss_pred ccc
Confidence 863
No 225
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.65 E-value=2.4e-07 Score=104.47 Aligned_cols=188 Identities=22% Similarity=0.244 Sum_probs=107.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhHHHHHHHHHHH---------------HHhcCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGAARINEMFSI---------------ARRNAPAF 265 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~~~~vr~lF~~---------------Ak~~~P~I 265 (686)
...+++.|.+||||+++|+++.... +.||+.++|..+.+.... ..+|.. ........
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~-----~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE-----SELFGHEKGAFTGANTRRQGRFEQADGGT 231 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH-----HHhcCCCCCCCCCcccCCCCcEEECCCCe
Confidence 4579999999999999999997753 579999999987543111 111110 11123578
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC-------CCccccccCCccce
Q 005643 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-------ELDLEFVRPGRIDR 338 (686)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-------~LD~aLlrpgRFd~ 338 (686)
|||||||.+.. .....|+..++........+......++.+|+||+..- .+.+.|.. |+.
T Consensus 232 l~l~ei~~l~~----------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~- 298 (463)
T TIGR01818 232 LFLDEIGDMPL----------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN- 298 (463)
T ss_pred EEEEchhhCCH----------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-
Confidence 99999999953 23455666665422111111112233578898887632 22233333 332
Q ss_pred EEEeCCCCHHHHH----HHHHHHhcC----CC----ccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Q 005643 339 RLYIGLPDAKQRV----QIFDVHSAG----KQ----LAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406 (686)
Q Consensus 339 ~I~v~~Pd~~eR~----~Il~~~l~~----~~----l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~ 406 (686)
.+.+..|...+|. .+++.++.. .. .-.+..+..|....---+-++|+++++.|+..+. ...|+.+
T Consensus 299 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~---~~~i~~~ 375 (463)
T TIGR01818 299 VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS---GDEVLVS 375 (463)
T ss_pred cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHH
Confidence 3455666655553 344443321 11 1112234556655444466899999998887652 3467777
Q ss_pred HHHHHH
Q 005643 407 DIVDVL 412 (686)
Q Consensus 407 dl~~Al 412 (686)
|+...+
T Consensus 376 ~l~~~~ 381 (463)
T TIGR01818 376 DLPAEL 381 (463)
T ss_pred hchHHH
Confidence 765443
No 226
>PRK15115 response regulator GlrR; Provisional
Probab=98.64 E-value=4.9e-07 Score=101.50 Aligned_cols=187 Identities=19% Similarity=0.255 Sum_probs=113.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhHHHHHHHHHHHH---------------HhcCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGAARINEMFSIA---------------RRNAPAF 265 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~~~~vr~lF~~A---------------k~~~P~I 265 (686)
...++|+|++|||||++|+++.... +.||+.++|..+.+.... ..+|..+ .......
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~-----~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE-----SELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH-----HHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 3469999999999999999997754 579999999987543211 1222111 1122468
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccc-------e
Q 005643 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID-------R 338 (686)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd-------~ 338 (686)
|||||||.+.. .....|+..++...............++.+|+||+.. ++..+.+ |+|. .
T Consensus 232 l~l~~i~~l~~----------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l~ 298 (444)
T PRK15115 232 LFLDEIGDMPA----------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRLN 298 (444)
T ss_pred EEEEccccCCH----------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhhc
Confidence 99999999953 2445666666543221111111223468999999863 4443333 5552 1
Q ss_pred EEEeCCCCHHHHHH----HHHHHhcC------CCc--cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Q 005643 339 RLYIGLPDAKQRVQ----IFDVHSAG------KQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406 (686)
Q Consensus 339 ~I~v~~Pd~~eR~~----Il~~~l~~------~~l--~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~ 406 (686)
.+.+..|...+|.+ +++.++.. ... -.+.-+..|....-.-+.++|.++++.|+..+ ....|+.+
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~ 375 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDA 375 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChh
Confidence 56778888888853 33333321 111 12223667777765558889999999887654 23467777
Q ss_pred HHHHH
Q 005643 407 DIVDV 411 (686)
Q Consensus 407 dl~~A 411 (686)
++...
T Consensus 376 ~l~~~ 380 (444)
T PRK15115 376 LVEQA 380 (444)
T ss_pred hhhhh
Confidence 76433
No 227
>PRK06526 transposase; Provisional
Probab=98.63 E-value=6.1e-08 Score=100.99 Aligned_cols=86 Identities=28% Similarity=0.429 Sum_probs=55.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhH--HHHHHHHHHHHHhcCCeEEEEccchhhhccC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG--AARINEMFSIARRNAPAFVFVDEIDAIAGRH 278 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~--~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~ 278 (686)
+.+++|+||||||||+||.+++.++ |..+.+++..++....... .......+... ..+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC--
Confidence 4689999999999999999998764 7788888777776553211 11122222222 3467999999997742
Q ss_pred CCCChhHHHHHHHHHHHh
Q 005643 279 ARKDPRRRATFEALIAQL 296 (686)
Q Consensus 279 ~~~~~e~~~~l~~LL~~l 296 (686)
+......+.+++...
T Consensus 174 ---~~~~~~~L~~li~~r 188 (254)
T PRK06526 174 ---EPEAANLFFQLVSSR 188 (254)
T ss_pred ---CHHHHHHHHHHHHHH
Confidence 223334455555543
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.2e-06 Score=93.90 Aligned_cols=130 Identities=15% Similarity=0.227 Sum_probs=94.3
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCCC-----------------------eEEEeCccccchhhhHHHHHHHHHHH
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLP-----------------------FVFASGAEFTDSEKSGAARINEMFSI 257 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~-----------------------fi~is~s~~~~~~~~~~~~vr~lF~~ 257 (686)
.+.|.++||+||.|+||+.+|+++|..+-.. |+.+.... ....-+.+.+|.+-+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~~I~vdqiR~l~~~ 99 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EGKSITVEQIRQCNRL 99 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CCCcCCHHHHHHHHHH
Confidence 3578899999999999999999999876321 22222110 0001123456665544
Q ss_pred HHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccC
Q 005643 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (686)
Q Consensus 258 Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp 333 (686)
+.. ....|++||++|.+. ....|.||+.+++... ++++|..|+.++.|-|.+++
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~-----------~t~fiL~t~~~~~lLpTI~S- 157 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN----------ESASNALLKTLEEPAP-----------NCLFLLVTHNQKRLLPTIVS- 157 (319)
T ss_pred HhhCcccCCceEEEecchhhhC----------HHHHHHHHHHhcCCCC-----------CeEEEEEECChhhChHHHHh-
Confidence 432 334799999999994 3577999999988543 36888889999999999999
Q ss_pred CccceEEEeCCCCHHHHHHHHHH
Q 005643 334 GRIDRRLYIGLPDAKQRVQIFDV 356 (686)
Q Consensus 334 gRFd~~I~v~~Pd~~eR~~Il~~ 356 (686)
|+ ..+.|++|+.++..+.+..
T Consensus 158 -RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 158 -RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -cc-eeEeCCCCCHHHHHHHHHH
Confidence 98 6899999999988887754
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.55 E-value=3.3e-07 Score=95.54 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=63.5
Q ss_pred cccccceecCcc-cHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccc
Q 005643 167 KSMYKEVVLGGD-VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (686)
Q Consensus 167 ~~~f~dvvG~~e-~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~ 242 (686)
+.++.|+-+.+. .+..+..+..+.+.-. .+.+++|+||||||||+||-|+++++ |..+++++..+++.
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~~~~~~~~--------~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLASLVEFFE--------RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred CcccccccCCcchhHHHHHHHHHHHHHhc--------cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 344555544443 3445555554432221 46799999999999999999998875 88999999999887
Q ss_pred hhhhHHHH--HH-HHHHHHHhcCCeEEEEccchhh
Q 005643 243 SEKSGAAR--IN-EMFSIARRNAPAFVFVDEIDAI 274 (686)
Q Consensus 243 ~~~~~~~~--vr-~lF~~Ak~~~P~ILfIDEiDal 274 (686)
........ .. .+.... ....+|+|||+-..
T Consensus 147 ~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 147 KLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 64332221 11 122212 23469999999876
No 230
>PRK06921 hypothetical protein; Provisional
Probab=98.55 E-value=6.1e-07 Score=94.22 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=47.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDA 273 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDa 273 (686)
...+++|+||||||||+|+.|+|+++ |..+++++..++..............+... ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEecccc
Confidence 35789999999999999999999875 677888887665443221111222222222 2357999999954
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.54 E-value=2.2e-07 Score=100.17 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=49.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhH----HHHHHHHHHHHHhcCCeEEEEccchhh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG----AARINEMFSIARRNAPAFVFVDEIDAI 274 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~----~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (686)
..+++|+||||||||+||.|+|+++ |..+++++..++....... .......++... ...+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 3789999999999999999999986 7889999988876643211 011111233333 3469999999766
No 232
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=5.2e-07 Score=97.34 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=92.6
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCC-------------------------CeEEEeCccccchhh-----hHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-------------------------PFVFASGAEFTDSEK-----SGAARI 251 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~-------------------------~fi~is~s~~~~~~~-----~~~~~v 251 (686)
+.|.++||+||+|+|||++|+++|+.+.+ .|+.++...-.+..+ -+.+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 67889999999999999999999997642 123332211000000 134567
Q ss_pred HHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCc
Q 005643 252 NEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327 (686)
Q Consensus 252 r~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD 327 (686)
|++.+.+.. ....|++||+++.+- ....|.|+..++.... ++.+|.+|+.++.+.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld----------~~a~naLLk~LEep~~-----------~~~~Ilvth~~~~ll 157 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN----------LQAANSLLKVLEEPPP-----------QVVFLLVSHAADKVL 157 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC----------HHHHHHHHHHHHhCcC-----------CCEEEEEeCChHhCh
Confidence 777776654 234699999999983 2456778887776532 246777888899999
Q ss_pred cccccCCccceEEEeCCCCHHHHHHHHHH
Q 005643 328 LEFVRPGRIDRRLYIGLPDAKQRVQIFDV 356 (686)
Q Consensus 328 ~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~ 356 (686)
+.+.+ |+ ..+.|++|+.++..+.|..
T Consensus 158 ~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 158 PTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99998 88 6899999999988877754
No 233
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.54 E-value=1.9e-06 Score=98.21 Aligned_cols=204 Identities=18% Similarity=0.249 Sum_probs=111.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe-Ccccc-
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS-GAEFT- 241 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is-~s~~~- 241 (686)
...+.+.+||+... +-+.++-.|++... .+....+-+||+||||||||++++.+|+++|..+..-. ...+.
T Consensus 12 ky~P~~~~eLavhk---kKv~eV~~wl~~~~----~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~ 84 (519)
T PF03215_consen 12 KYAPKTLDELAVHK---KKVEEVRSWLEEMF----SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRE 84 (519)
T ss_pred hcCCCCHHHhhccH---HHHHHHHHHHHHHh----ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccc
Confidence 45678889998775 44445555554321 12334557889999999999999999999998776432 22211
Q ss_pred ---------chhhh------HHHHHHHH-HHHHHh-----------cCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005643 242 ---------DSEKS------GAARINEM-FSIARR-----------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (686)
Q Consensus 242 ---------~~~~~------~~~~vr~l-F~~Ak~-----------~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~ 294 (686)
..... .......+ +..++. ..+.||+|+|+-.+... .....-+.|..
T Consensus 85 ~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~~~f~~~L~~ 158 (519)
T PF03215_consen 85 SDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DTSRFREALRQ 158 (519)
T ss_pred cccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------hHHHHHHHHHH
Confidence 00000 01112222 122221 24679999999877532 11222222333
Q ss_pred HhcCCcccCCcccccccc-cEEEEEe-c------CCC--------CCCccccccCCccceEEEeCCCCHHHHHHHHHHHh
Q 005643 295 QLDGDKERTGIDRFSLRQ-AVIFICA-T------NRP--------DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS 358 (686)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~-~ViVIaa-T------N~p--------~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l 358 (686)
.+... .. ++++|.+ | |.. ..+++.++...++ .+|.|.+-...-..+-|+..+
T Consensus 159 ~l~~~-----------~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~ 226 (519)
T PF03215_consen 159 YLRSS-----------RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRIL 226 (519)
T ss_pred HHHcC-----------CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHH
Confidence 33221 11 4677776 1 111 1355666653344 578887766655555444333
Q ss_pred cCC--------Ccccccc-HHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 359 AGK--------QLAEDVN-FEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 359 ~~~--------~l~~dvd-l~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
... ......+ ++.|+..+. +||+.+++.-...|.
T Consensus 227 ~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 227 KKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 221 1122222 667776644 499999997777775
No 234
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.53 E-value=1e-06 Score=98.60 Aligned_cols=187 Identities=21% Similarity=0.238 Sum_probs=111.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchhhhHHHHHHHHHHH---------------HHhcCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKSGAARINEMFSI---------------ARRNAPAF 265 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~~~~~~~vr~lF~~---------------Ak~~~P~I 265 (686)
...++++|.+||||+++|+++... .+.||+.++|+.+..... -..+|.. .....+++
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~-----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL-----ESELFGHEKGAFTGADKRREGRFVEADGGT 236 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH-----HHHhcCCCCCCcCCCCcCCCCceeECCCCE
Confidence 467999999999999999999654 457999999998754311 1112211 01223578
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccce-------
Q 005643 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR------- 338 (686)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~------- 338 (686)
|||||||.+.. .....|+..++........+......++.+|+||+.+- .....+|+|..
T Consensus 237 l~ldei~~l~~----------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~ 303 (441)
T PRK10365 237 LFLDEIGDISP----------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLN 303 (441)
T ss_pred EEEeccccCCH----------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhc
Confidence 99999999953 24456666665432211111112233578888887632 12233455532
Q ss_pred EEEeCCCCHHHHHH----HHHHHhcC------CCc--cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Q 005643 339 RLYIGLPDAKQRVQ----IFDVHSAG------KQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQ 406 (686)
Q Consensus 339 ~I~v~~Pd~~eR~~----Il~~~l~~------~~l--~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~ 406 (686)
.+.+..|...+|.+ +++.++.. ... -.+..+..|....-.-+.++|.++++.|...+ ....|+.+
T Consensus 304 ~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~ 380 (441)
T PRK10365 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL---TGEYISER 380 (441)
T ss_pred cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchH
Confidence 56777888777744 33333321 110 12223556666554447788889988877653 33457777
Q ss_pred HHHHH
Q 005643 407 DIVDV 411 (686)
Q Consensus 407 dl~~A 411 (686)
++...
T Consensus 381 ~l~~~ 385 (441)
T PRK10365 381 ELPLA 385 (441)
T ss_pred hCchh
Confidence 76433
No 235
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=3.8e-06 Score=91.98 Aligned_cols=201 Identities=17% Similarity=0.165 Sum_probs=123.5
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----C-CCeEEEeCccccchhhh
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----G-LPFVFASGAEFTDSEKS 246 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----g-~~fi~is~s~~~~~~~~ 246 (686)
.+.|.+ .++..+-+|++.+. -.+.+.++.+.|-||||||.+...+-... . ...++++|.++......
T Consensus 151 ~l~gRe---~e~~~v~~F~~~hl-----e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRE---LEMDIVREFFSLHL-----ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchH---HHHHHHHHHHHhhh-----hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 344555 34445555665552 34567889999999999999888763322 2 24588999875432110
Q ss_pred ---------------H-HHHHHHHHH-HHHhc-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccc
Q 005643 247 ---------------G-AARINEMFS-IARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRF 308 (686)
Q Consensus 247 ---------------~-~~~vr~lF~-~Ak~~-~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~ 308 (686)
+ .......|. ..... .+-++++||+|.|+.++ ++.|..+......
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFewp~l------ 285 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEWPKL------ 285 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhcccC------
Confidence 0 111222332 22222 36799999999997442 1222333332222
Q ss_pred cccccEEEEEecCCCCCCcccccc----CCccceEEEeCCCCHHHHHHHHHHHhcCCCcccccc--HHHHHHhccCCCHH
Q 005643 309 SLRQAVIFICATNRPDELDLEFVR----PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVN--FEELVFRTVGFSGA 382 (686)
Q Consensus 309 ~~~~~ViVIaaTN~p~~LD~aLlr----pgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvd--l~~La~~t~G~sga 382 (686)
....+++|+-.|..+.-|..|-| -+.-...+.|++++.++..+||+..+.........+ +...|+...|.||
T Consensus 286 -p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG- 363 (529)
T KOG2227|consen 286 -PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG- 363 (529)
T ss_pred -CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-
Confidence 12348999999988765554432 122245899999999999999998887766544433 5667777788777
Q ss_pred HHH---HHHHHHHHHHHHhC
Q 005643 383 DIR---NLVNESGIMSVRKG 399 (686)
Q Consensus 383 dL~---~lv~eA~~~A~r~~ 399 (686)
|++ .+|+.|...+-...
T Consensus 364 DlRkaLdv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 364 DLRKALDVCRRAIEIAEIEK 383 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 455 44676666665543
No 236
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=1.1e-06 Score=81.87 Aligned_cols=70 Identities=24% Similarity=0.414 Sum_probs=49.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g--~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (686)
+.++|+||+|+|||++++.++.... ..++++++.+.......... +...+.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhhc
Confidence 5689999999999999999998876 78888888776543211111 2233332222356899999999883
No 237
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.49 E-value=9.1e-07 Score=89.24 Aligned_cols=166 Identities=17% Similarity=0.244 Sum_probs=85.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCC---CeEEEeCcc-ccch-h---------------------------------
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGL---PFVFASGAE-FTDS-E--------------------------------- 244 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~---~fi~is~s~-~~~~-~--------------------------------- 244 (686)
....++|+||.|+|||+|++.+.....- ..+++++.. .... .
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 3568999999999999999999998732 222222211 1100 0
Q ss_pred -hhHHHHHHHHHHHHHhcC-CeEEEEccchhhh-ccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 005643 245 -KSGAARINEMFSIARRNA-PAFVFVDEIDAIA-GRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (686)
Q Consensus 245 -~~~~~~vr~lF~~Ak~~~-P~ILfIDEiDal~-~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (686)
......+..+++...... ..||+|||++.+. .. . +....+..|...++....... ..+|+++++
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~--------~~~v~~~S~ 165 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS--E---EDKDFLKSLRSLLDSLLSQQN--------VSIVITGSS 165 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT--T---TTHHHHHHHHHHHHH----TT--------EEEEEEESS
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc--c---chHHHHHHHHHHHhhccccCC--------ceEEEECCc
Confidence 011223555555555433 4899999999996 21 1 223344445444444222111 123344443
Q ss_pred CC---C--CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC-Cc-cccccHHHHHHhccCCCHHHHH
Q 005643 322 RP---D--ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-QL-AEDVNFEELVFRTVGFSGADIR 385 (686)
Q Consensus 322 ~p---~--~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-~l-~~dvdl~~La~~t~G~sgadL~ 385 (686)
.. + .-...+. +|+.. +.+++.+.++..++++...... .+ .++.++..+...+.|. |+-|.
T Consensus 166 ~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 166 DSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp HHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHHH
T ss_pred hHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC-HHHHh
Confidence 21 1 1112222 47766 9999999999999999876554 11 2455678888877774 44443
No 238
>PRK09183 transposase/IS protein; Provisional
Probab=98.44 E-value=6.5e-07 Score=93.65 Aligned_cols=72 Identities=26% Similarity=0.429 Sum_probs=50.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchhhhH--HHHHHHHHHHHHhcCCeEEEEccchhhh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKSG--AARINEMFSIARRNAPAFVFVDEIDAIA 275 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~~~~--~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (686)
...+++|+||||||||+||.+++.. .|..+.++++.++....... ...+...|... ...+.+++|||++.+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3468999999999999999999765 47788888877766442211 11234445443 2456799999998763
No 239
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.40 E-value=6.3e-07 Score=84.53 Aligned_cols=59 Identities=36% Similarity=0.631 Sum_probs=44.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g---~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (686)
...|||+|+|||||+++|+++....+ .+|+.++|..+. .++++.+ .+..|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------HHHHHHc---CCCEEEECChHHCC
Confidence 45799999999999999999988664 377777777644 3345554 55689999999994
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.40 E-value=2.7e-07 Score=91.16 Aligned_cols=70 Identities=26% Similarity=0.480 Sum_probs=47.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhH--HHHHHHHHHHHHhcCCeEEEEccchhh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG--AARINEMFSIARRNAPAFVFVDEIDAI 274 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~--~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (686)
...|++|+||||||||+||.+++.++ |.++.+++.+++....... .......+.... ...+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 35799999999999999999998765 8899999988887653211 112333444443 3468999999644
No 241
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.39 E-value=6.9e-06 Score=84.60 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=116.3
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-C--CC----------
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-G--LP---------- 231 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-g--~~---------- 231 (686)
..+.+|+.+.+.++....|..+...-.-| ++|+|||+|+||-+.+.++-+++ | ++
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~~d~P------------Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSSTGDFP------------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcccCCCC------------eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 34556777777777666666654421123 79999999999999999998876 2 21
Q ss_pred --------eEEEeCccccch----hhh-HHHHHHHHHHHHHhcC---------CeEEEEccchhhhccCCCCChhHHHHH
Q 005643 232 --------FVFASGAEFTDS----EKS-GAARINEMFSIARRNA---------PAFVFVDEIDAIAGRHARKDPRRRATF 289 (686)
Q Consensus 232 --------fi~is~s~~~~~----~~~-~~~~vr~lF~~Ak~~~---------P~ILfIDEiDal~~~~~~~~~e~~~~l 289 (686)
+-.++.....+. .|. ..-.+.++.+...+.+ -.+++|-|.|.+.. ...
T Consensus 75 tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~----------dAQ 144 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR----------DAQ 144 (351)
T ss_pred cCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH----------HHH
Confidence 111222222111 111 1122455555444333 25899999999952 234
Q ss_pred HHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccc-c
Q 005643 290 EALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV-N 368 (686)
Q Consensus 290 ~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv-d 368 (686)
..|-..|+...++ +.+|..+|....+=+++++ |+ ..|.++.|+.++...++...+.+..+.-.. -
T Consensus 145 ~aLRRTMEkYs~~-----------~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 145 HALRRTMEKYSSN-----------CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred HHHHHHHHHHhcC-----------ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 5566667665443 5788889999999999998 76 578999999999999999888766655332 3
Q ss_pred HHHHHHhccC
Q 005643 369 FEELVFRTVG 378 (686)
Q Consensus 369 l~~La~~t~G 378 (686)
+..+|..+.|
T Consensus 211 l~rIa~kS~~ 220 (351)
T KOG2035|consen 211 LKRIAEKSNR 220 (351)
T ss_pred HHHHHHHhcc
Confidence 5667766554
No 242
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.38 E-value=3.5e-06 Score=88.77 Aligned_cols=141 Identities=20% Similarity=0.274 Sum_probs=76.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-C--eEEEeCccccchhhhHHHHHHHHHHHH-----------HhcCCeEEEEc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGL-P--FVFASGAEFTDSEKSGAARINEMFSIA-----------RRNAPAFVFVD 269 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~-~--fi~is~s~~~~~~~~~~~~vr~lF~~A-----------k~~~P~ILfID 269 (686)
.+.+||+||+|||||.+++..-.+..- . ...++++... .+..+..+.+.. .....+|+|||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T-----ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT-----TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH-----HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC-----CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 467999999999999999988765533 2 2234443322 122222222211 01224799999
Q ss_pred cchhhhccCCCCChhHHHHHHHHHHHhcCC---cccCCcccccccccEEEEEecCCCC---CCccccccCCccceEEEeC
Q 005643 270 EIDAIAGRHARKDPRRRATFEALIAQLDGD---KERTGIDRFSLRQAVIFICATNRPD---ELDLEFVRPGRIDRRLYIG 343 (686)
Q Consensus 270 EiDal~~~~~~~~~e~~~~l~~LL~~ld~~---~~~~~~~~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRFd~~I~v~ 343 (686)
|+..-.... ...+....||.++-.. -..... .+..-.++.+|||+|.+. .+++.++| .| ..+.++
T Consensus 108 DlN~p~~d~-----ygtq~~iElLRQ~i~~~g~yd~~~~-~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~ 178 (272)
T PF12775_consen 108 DLNMPQPDK-----YGTQPPIELLRQLIDYGGFYDRKKL-EWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIP 178 (272)
T ss_dssp TTT-S---T-----TS--HHHHHHHHHHHCSEEECTTTT-EEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE--
T ss_pred ccCCCCCCC-----CCCcCHHHHHHHHHHhcCcccCCCc-EEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEec
Confidence 998553222 1122233455544222 111111 133335688999988643 47888887 67 689999
Q ss_pred CCCHHHHHHHHHHHh
Q 005643 344 LPDAKQRVQIFDVHS 358 (686)
Q Consensus 344 ~Pd~~eR~~Il~~~l 358 (686)
.|+.+....|+...+
T Consensus 179 ~p~~~sl~~If~~il 193 (272)
T PF12775_consen 179 YPSDESLNTIFSSIL 193 (272)
T ss_dssp --TCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 999999888876544
No 243
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.31 E-value=3.6e-06 Score=77.72 Aligned_cols=85 Identities=21% Similarity=0.353 Sum_probs=53.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--------CCCeEEEeCccccchhh----------------hHHHH-HHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES--------GLPFVFASGAEFTDSEK----------------SGAAR-INEMFSIA 258 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~--------g~~fi~is~s~~~~~~~----------------~~~~~-vr~lF~~A 258 (686)
.+.++++||||+|||++++.++... ..+++.+++........ ..... ...+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999877 78888888766442100 01122 23333444
Q ss_pred HhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005643 259 RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (686)
Q Consensus 259 k~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld 297 (686)
......+|+|||+|.+. + ...++.|...++
T Consensus 84 ~~~~~~~lviDe~~~l~-~--------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S--------DEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T--------HHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC-C--------HHHHHHHHHHHh
Confidence 44444599999999984 1 445666655555
No 244
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.30 E-value=2.6e-06 Score=90.25 Aligned_cols=207 Identities=18% Similarity=0.193 Sum_probs=118.3
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHH---HhCCCeEEEeCccccc
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK---ESGLPFVFASGAEFTD 242 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~---e~g~~fi~is~s~~~~ 242 (686)
....|+.+++... .++.++.. ..++..+ ...+||.|..||||-++||+.-. ....||+.++|..+.+
T Consensus 199 ~~~~F~~~v~~S~---~mk~~v~q---A~k~Aml----DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSP---KMKHVVEQ---AQKLAML----DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccH---HHHHHHHH---HHHhhcc----CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 4456777776653 22222221 1222222 23499999999999999999844 3468999999999886
Q ss_pred hhhhH--------HHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccE
Q 005643 243 SEKSG--------AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV 314 (686)
Q Consensus 243 ~~~~~--------~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~V 314 (686)
...++ ..-...+|++|... -+|+|||..+.++ ....||.-+....-...+......-+|
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~----------lQaKLLRFL~DGtFRRVGee~Ev~vdV 335 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPR----------LQAKLLRFLNDGTFRRVGEDHEVHVDV 335 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHH----------HHHHHHHHhcCCceeecCCcceEEEEE
Confidence 53322 12345678877544 5999999888542 445566665432222211112223469
Q ss_pred EEEEecCCCC--CCccccccCCccc--eEEEeCCCCHHHHHH--------HHHHHhcCCCcc-cccc---HHHHHHhccC
Q 005643 315 IFICATNRPD--ELDLEFVRPGRID--RRLYIGLPDAKQRVQ--------IFDVHSAGKQLA-EDVN---FEELVFRTVG 378 (686)
Q Consensus 315 iVIaaTN~p~--~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~--------Il~~~l~~~~l~-~dvd---l~~La~~t~G 378 (686)
.||+||..+- ..+..-.|..-|- .++.+..|...+|.. +++.+....... +..+ +..|.+..--
T Consensus 336 RVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~Wp 415 (511)
T COG3283 336 RVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWP 415 (511)
T ss_pred EEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCC
Confidence 9999997642 2222222222222 267788888777743 222333322221 1111 3444444333
Q ss_pred CCHHHHHHHHHHHHHHH
Q 005643 379 FSGADIRNLVNESGIMS 395 (686)
Q Consensus 379 ~sgadL~~lv~eA~~~A 395 (686)
-+-++|.|.+-+|+...
T Consensus 416 GNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 416 GNVRQLKNAIYRALTLL 432 (511)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 46788999888887654
No 245
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.21 E-value=5.8e-06 Score=90.36 Aligned_cols=140 Identities=17% Similarity=0.265 Sum_probs=81.3
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCC-CeEEEeCccccchhhhHHHH-------HHHHHHHHHhcCCeEEEEccch
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL-PFVFASGAEFTDSEKSGAAR-------INEMFSIARRNAPAFVFVDEID 272 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~-~fi~is~s~~~~~~~~~~~~-------vr~lF~~Ak~~~P~ILfIDEiD 272 (686)
...|+|++||||+|+|||+|.-.+...+.. .-..+...+|+......... +..+-+... ....+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 457999999999999999999999877644 22222333444332111111 222222222 223599999997
Q ss_pred hhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC-CCCccccccCCccceEEEeCCCCHHHHH
Q 005643 273 AIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP-DELDLEFVRPGRIDRRLYIGLPDAKQRV 351 (686)
Q Consensus 273 al~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p-~~LD~aLlrpgRFd~~I~v~~Pd~~eR~ 351 (686)
.- +-.....+..|+..+-. .+|++|+|+|++ +.|- ++.+.+...+ --.
T Consensus 138 V~-------DiaDAmil~rLf~~l~~-------------~gvvlVaTSN~~P~~Ly-----~~gl~r~~Fl------p~I 186 (362)
T PF03969_consen 138 VT-------DIADAMILKRLFEALFK-------------RGVVLVATSNRPPEDLY-----KNGLQRERFL------PFI 186 (362)
T ss_pred cc-------chhHHHHHHHHHHHHHH-------------CCCEEEecCCCChHHHc-----CCcccHHHHH------HHH
Confidence 43 22335567777777643 248999999983 3332 1223221111 135
Q ss_pred HHHHHHhcCCCccccccHHHH
Q 005643 352 QIFDVHSAGKQLAEDVNFEEL 372 (686)
Q Consensus 352 ~Il~~~l~~~~l~~dvdl~~L 372 (686)
++|+.++.-..+....|....
T Consensus 187 ~~l~~~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 187 DLLKRRCDVVELDGGVDYRRR 207 (362)
T ss_pred HHHHhceEEEEecCCCchhhh
Confidence 667777776667766676553
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.18 E-value=3.4e-05 Score=73.07 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=48.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhh-------------------------hHHHHHHHHHHHH
Q 005643 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK-------------------------SGAARINEMFSIA 258 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~-------------------------~~~~~vr~lF~~A 258 (686)
++|+||||+|||+++..++..+ +.++++++......... ......+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56777777654332100 0011122334556
Q ss_pred HhcCCeEEEEccchhhhc
Q 005643 259 RRNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 259 k~~~P~ILfIDEiDal~~ 276 (686)
....|.+++|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667789999999999864
No 247
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.16 E-value=5.3e-06 Score=96.26 Aligned_cols=196 Identities=18% Similarity=0.236 Sum_probs=108.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE-EeCccccchhhhHHHHHHHHH--H---HH---HhcCCeEEEEccchh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF-ASGAEFTDSEKSGAARINEMF--S---IA---RRNAPAFVFVDEIDA 273 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~-is~s~~~~~~~~~~~~vr~lF--~---~A---k~~~P~ILfIDEiDa 273 (686)
..-+|||.|-||||||.|.|.+++-+-..++. ..++. ..|.++..+++-+ + .| ....+.|.+|||+|.
T Consensus 318 GDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss---~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdK 394 (682)
T COG1241 318 GDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS---AAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDK 394 (682)
T ss_pred cceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc---ccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccC
Confidence 34679999999999999999999876554431 11111 1111111122111 1 01 012357999999998
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccC---CcccccccccEEEEEecCCCC-------------CCccccccCCccc
Q 005643 274 IAGRHARKDPRRRATFEALIAQLDGDKERT---GIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRID 337 (686)
Q Consensus 274 l~~~~~~~~~e~~~~l~~LL~~ld~~~~~~---~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRFd 337 (686)
+- +...+.+.+.|+...-.- |+. ...+...-|+||+|... .|++.|++ |||
T Consensus 395 m~----------~~dr~aihEaMEQQtIsIaKAGI~-atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFD 461 (682)
T COG1241 395 MN----------EEDRVAIHEAMEQQTISIAKAGIT-ATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFD 461 (682)
T ss_pred CC----------hHHHHHHHHHHHhcEeeeccccee-eecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCC
Confidence 83 224466777776532221 110 11222346788888754 57889999 999
Q ss_pred eEEEe-CCCCHHHH----HHHHHHHhcCCC---------------------------------ccccccHHHHH------
Q 005643 338 RRLYI-GLPDAKQR----VQIFDVHSAGKQ---------------------------------LAEDVNFEELV------ 373 (686)
Q Consensus 338 ~~I~v-~~Pd~~eR----~~Il~~~l~~~~---------------------------------l~~dvdl~~La------ 373 (686)
..+.+ +.|+.+.= ..|+..|....+ ...+...+.|.
T Consensus 462 Lifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~ 541 (682)
T COG1241 462 LIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEM 541 (682)
T ss_pred eeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHh
Confidence 86554 55665432 234444531110 00000001110
Q ss_pred -H--------hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 374 -F--------RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 374 -~--------~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
+ .+...|.++|+.+++-|-..|..+-+..++.+|+.+|++-
T Consensus 542 Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~l 591 (682)
T COG1241 542 RKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRL 591 (682)
T ss_pred hhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 0 1122467777777777777777777777777777777754
No 248
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.16 E-value=1.9e-05 Score=81.25 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=77.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCCh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP 283 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~ 283 (686)
..|-.++||+|||||.++|++|..+|.+++..+|++-.+.. .+..+|.=+... .+-+++||++.+- .
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~-----~l~ril~G~~~~-GaW~cfdefnrl~-------~ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQ-----SLSRILKGLAQS-GAWLCFDEFNRLS-------E 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HH-----HHHHHHHHHHHH-T-EEEEETCCCSS-------H
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHH-----HHHHHHHHHhhc-Cchhhhhhhhhhh-------H
Confidence 35778999999999999999999999999999999976542 355566544443 3789999999883 2
Q ss_pred hHHHHHHHHH----HHhcCCcccC--CcccccccccEEEEEecCC----CCCCccccccCCccceEEEeCCCCHHHHHHH
Q 005643 284 RRRATFEALI----AQLDGDKERT--GIDRFSLRQAVIFICATNR----PDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (686)
Q Consensus 284 e~~~~l~~LL----~~ld~~~~~~--~~~~~~~~~~ViVIaaTN~----p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~I 353 (686)
+.-..+.+.+ ..+......- .........++-++.|.|. ...||+.|+. -| |-+.+..||.....++
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHHH
Confidence 2222232322 2332211110 0111222334556666663 3478888876 55 8899999998876666
Q ss_pred H
Q 005643 354 F 354 (686)
Q Consensus 354 l 354 (686)
+
T Consensus 176 ~ 176 (231)
T PF12774_consen 176 L 176 (231)
T ss_dssp H
T ss_pred H
Confidence 4
No 249
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.13 E-value=9.9e-05 Score=82.46 Aligned_cols=204 Identities=20% Similarity=0.244 Sum_probs=107.1
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhC-CccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCc-cc--
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERG-VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA-EF-- 240 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g-~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s-~~-- 240 (686)
..+.+.++++... +-+.++-.||+ . +.... .-..+-+||+||+|||||+.++-+++++|+.++.-+.. .+
T Consensus 76 y~P~t~eeLAVHk---kKI~eVk~WL~-~--~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~ 149 (634)
T KOG1970|consen 76 YKPRTLEELAVHK---KKISEVKQWLK-Q--VAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKE 149 (634)
T ss_pred cCcccHHHHhhhH---HhHHHHHHHHH-H--HHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccc
Confidence 4456677776544 33444444444 0 00000 11345688999999999999999999999887754411 11
Q ss_pred cch-----------hhhHHHHHHHHHHHHH------------hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005643 241 TDS-----------EKSGAARINEMFSIAR------------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (686)
Q Consensus 241 ~~~-----------~~~~~~~vr~lF~~Ak------------~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld 297 (686)
.+. +..-..........+. ...+.+|+|||+-....+ + ....+..+|.++-
T Consensus 150 ~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~----d--~~~~f~evL~~y~ 223 (634)
T KOG1970|consen 150 PENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR----D--DSETFREVLRLYV 223 (634)
T ss_pred cccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh----h--hHHHHHHHHHHHH
Confidence 110 1111112222222331 133679999999877643 1 2233444444433
Q ss_pred CCcccCCcccccccccEEEEEe-cCCCCCCccccccC------CccceEEEeCCCCHHHHHHHHHHHhcCC--C-----c
Q 005643 298 GDKERTGIDRFSLRQAVIFICA-TNRPDELDLEFVRP------GRIDRRLYIGLPDAKQRVQIFDVHSAGK--Q-----L 363 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~ViVIaa-TN~p~~LD~aLlrp------gRFd~~I~v~~Pd~~eR~~Il~~~l~~~--~-----l 363 (686)
... ..++|+|.| ++.++..++-.+.| .|+ ..|.|.+-...-.++.|+..+... + .
T Consensus 224 s~g----------~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 224 SIG----------RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred hcC----------CCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 221 122333333 33344444333222 244 267787766655666666544321 1 1
Q ss_pred cccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005643 364 AEDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 364 ~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A 395 (686)
.....++.++.. +++||+.+++...+.+
T Consensus 293 ~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 293 PDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred chhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 223345556655 4559999999877775
No 250
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=4.7e-05 Score=80.54 Aligned_cols=120 Identities=12% Similarity=0.102 Sum_probs=82.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeC--------ccc--cchhh----hHHHHHHHHHHHHHh----cCC
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG--------AEF--TDSEK----SGAARINEMFSIARR----NAP 263 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~--------s~~--~~~~~----~~~~~vr~lF~~Ak~----~~P 263 (686)
+.|..+||+||+|+||+.+|.++|..+-+.--.-+| .++ ....+ -+.+.+|.+-+.+.. ...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 577899999999999999999999876432100011 111 11111 134456666555443 234
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeC
Q 005643 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343 (686)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~ 343 (686)
.|++||++|.+. ....|.||..|+.... ++++|..|+.++.|.|.+++ |+ ..+.|+
T Consensus 97 kv~ii~~ad~mt----------~~AaNaLLK~LEEPp~-----------~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~ 152 (290)
T PRK05917 97 KIYIIHEADRMT----------LDAISAFLKVLEDPPQ-----------HGVIILTSAKPQRLPPTIRS--RS-LSIHIP 152 (290)
T ss_pred eEEEEechhhcC----------HHHHHHHHHHhhcCCC-----------CeEEEEEeCChhhCcHHHHh--cc-eEEEcc
Confidence 699999999994 3477999999988543 37888888889999999998 87 466676
Q ss_pred CC
Q 005643 344 LP 345 (686)
Q Consensus 344 ~P 345 (686)
++
T Consensus 153 ~~ 154 (290)
T PRK05917 153 ME 154 (290)
T ss_pred ch
Confidence 54
No 251
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.09 E-value=2.3e-05 Score=78.92 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=53.6
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccch-hhhH-----------------------HHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-EKSG-----------------------AARIN 252 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~-~~~~-----------------------~~~vr 252 (686)
|.+...-++++||||+|||+++..++.+ .|.+.+++++..+... .... ...+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 5666777899999999999999998754 3678999998763211 1110 11133
Q ss_pred HHHHHHHhcCCeEEEEccchhhhc
Q 005643 253 EMFSIARRNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 253 ~lF~~Ak~~~P~ILfIDEiDal~~ 276 (686)
.+.+.+....+++|+||-+.++..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 444445556789999999999864
No 252
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.08 E-value=5.5e-06 Score=94.00 Aligned_cols=187 Identities=24% Similarity=0.310 Sum_probs=114.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH--HhCCCeEEEeCccccchhhhH--H------------HHHHHHHHHHHhcCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAK--ESGLPFVFASGAEFTDSEKSG--A------------ARINEMFSIARRNAPAFVF 267 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~--e~g~~fi~is~s~~~~~~~~~--~------------~~vr~lF~~Ak~~~P~ILf 267 (686)
.-.+||.|.|||||-.|||++-. +..-||+.++|..+.+...+. . +-.+..+++|. ...+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccH
Confidence 45699999999999999999944 356799999998876541110 0 11223333332 24799
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccce-------EE
Q 005643 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR-------RL 340 (686)
Q Consensus 268 IDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~-------~I 340 (686)
+|||..+. ......||..+....-..-+... ..-.|-||+||+++- ..+.+-|||.. ..
T Consensus 413 ldeIgd~p----------~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDMP----------LALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhch----------HHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 99999884 23567788887665443322222 556799999999742 35666788843 45
Q ss_pred EeCCCCHHHHHH---HHHHHh-cCC----CccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005643 341 YIGLPDAKQRVQ---IFDVHS-AGK----QLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 341 ~v~~Pd~~eR~~---Il~~~l-~~~----~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 411 (686)
.+.+|...+|.+ .|..++ +.. .++++.-..-++..-+| +-++|.|+++.++..+ ....|...|+...
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~ 553 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPE 553 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC---CCCeeEcccCCHH
Confidence 567777777643 333222 222 22222222334444455 7789999999888766 2333555554333
No 253
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.08 E-value=7.5e-06 Score=92.26 Aligned_cols=230 Identities=14% Similarity=0.117 Sum_probs=125.1
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhh--CCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhh
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYER--GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEK 245 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~--g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~ 245 (686)
.-|-.|-|.+.+|.-+- +..+-.-.++..- .++..-+|++.|.|||||+-+.+++++-+-..++ +++..-.. .|
T Consensus 342 Sl~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSSa-AG 417 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGIL--LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASSA-AG 417 (764)
T ss_pred hhCccccchHHHHhhHH--HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCccccc-cc
Confidence 45667788888876431 1222222222222 2445678999999999999999999886654433 33322110 11
Q ss_pred hHHHHHH--HHHH---HHH---hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC--CcccccccccEE
Q 005643 246 SGAARIN--EMFS---IAR---RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT--GIDRFSLRQAVI 315 (686)
Q Consensus 246 ~~~~~vr--~lF~---~Ak---~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~--~~~~~~~~~~Vi 315 (686)
.+++-++ ..++ .|- -....|-+|||+|.+.-+ ....+++.|+.....- .+-.-+.+...-
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~----------dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK----------DQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH----------hHHHHHHHHHhheehheecceEEeecchhh
Confidence 1110000 0000 010 012468999999999422 2356777776532211 111112222345
Q ss_pred EEEecCCCC-------------CCccccccCCccce-EEEeCCCCHHHHHHHHHHHhcCCCc-ccc------cc------
Q 005643 316 FICATNRPD-------------ELDLEFVRPGRIDR-RLYIGLPDAKQRVQIFDVHSAGKQL-AED------VN------ 368 (686)
Q Consensus 316 VIaaTN~p~-------------~LD~aLlrpgRFd~-~I~v~~Pd~~eR~~Il~~~l~~~~l-~~d------vd------ 368 (686)
||||+|... .+++++++ |||. .|-++-|++..-..|-++.+..... .+. ..
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrk 565 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRK 565 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHH
Confidence 788888753 57889999 9997 4456778776555443332211000 000 00
Q ss_pred -----------------------HHHHH--------HhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005643 369 -----------------------FEELV--------FRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 369 -----------------------l~~La--------~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (686)
...|- +.+.+.|.++|+.+++-+-.+|.-+-++.+|.+|+++|.+
T Consensus 566 Yi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 566 YIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 00111 1123567788888888777777777777788888877765
No 254
>PF05729 NACHT: NACHT domain
Probab=98.07 E-value=6.2e-05 Score=71.81 Aligned_cols=139 Identities=22% Similarity=0.302 Sum_probs=73.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--------CC-eEEEeCccccchhh--hH-----------HHHHHH-HHHHHHhc
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESG--------LP-FVFASGAEFTDSEK--SG-----------AARINE-MFSIARRN 261 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g--------~~-fi~is~s~~~~~~~--~~-----------~~~vr~-lF~~Ak~~ 261 (686)
|-++|+|+||+|||++++.++.... .+ ++++++.++..... .- ...... ........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 3588999999999999999987541 11 33455444433210 00 011122 12233455
Q ss_pred CCeEEEEccchhhhccCCCCChhHHHHHHHHH-HHhcCCcccCCcccccccccEEEEEecCCCC--CCccccccCCccce
Q 005643 262 APAFVFVDEIDAIAGRHARKDPRRRATFEALI-AQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDR 338 (686)
Q Consensus 262 ~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL-~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRFd~ 338 (686)
.+.+|+||.+|.+...... .+.. ....++ ..+.. ... .++.++.|+.... .+...+.. ..
T Consensus 81 ~~~llilDglDE~~~~~~~--~~~~-~~~~~l~~l~~~-~~~---------~~~~liit~r~~~~~~~~~~~~~----~~ 143 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS--QERQ-RLLDLLSQLLPQ-ALP---------PGVKLIITSRPRAFPDLRRRLKQ----AQ 143 (166)
T ss_pred CceEEEEechHhcccchhh--hHHH-HHHHHHHHHhhh-ccC---------CCCeEEEEEcCChHHHHHHhcCC----Cc
Confidence 6789999999999642111 1111 222222 22222 001 1133444443211 22222222 14
Q ss_pred EEEeCCCCHHHHHHHHHHHhcC
Q 005643 339 RLYIGLPDAKQRVQIFDVHSAG 360 (686)
Q Consensus 339 ~I~v~~Pd~~eR~~Il~~~l~~ 360 (686)
.+.+...+.+++.++++.+++.
T Consensus 144 ~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 144 ILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEEECCCCHHHHHHHHHHHhhc
Confidence 6889999999999999887653
No 255
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.07 E-value=2.9e-06 Score=91.88 Aligned_cols=197 Identities=19% Similarity=0.261 Sum_probs=105.6
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc-----cchh----hhHHHHHH-HHHHHHHhcCCeEEEEccc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF-----TDSE----KSGAARIN-EMFSIARRNAPAFVFVDEI 271 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~-----~~~~----~~~~~~vr-~lF~~Ak~~~P~ILfIDEi 271 (686)
+..-++||.|.||||||.|.+.+++-+... +++++... .... ..+...+. ..+-.| ...|++|||+
T Consensus 55 r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvla---d~GiccIDe~ 130 (331)
T PF00493_consen 55 RGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLA---DGGICCIDEF 130 (331)
T ss_dssp --S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHC---TTSEEEECTT
T ss_pred ccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCccceeccccccceeEEeCCchhcc---cCceeeeccc
Confidence 345689999999999999999886544332 33443321 1110 00000000 112222 3469999999
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHhcCCcccCC--cccccccccEEEEEecCCCC-------------CCccccccCCcc
Q 005643 272 DAIAGRHARKDPRRRATFEALIAQLDGDKERTG--IDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRI 336 (686)
Q Consensus 272 Dal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~--~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRF 336 (686)
|.+-. .....|++.|+...-.-. +-....+...-|+||+|... .+++.|++ ||
T Consensus 131 dk~~~----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RF 198 (331)
T PF00493_consen 131 DKMKE----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RF 198 (331)
T ss_dssp TT--C----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-
T ss_pred ccccc----------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hc
Confidence 99842 245778888876422111 11122334578899998765 47889999 99
Q ss_pred ceEEEe-CCCCHHHHHHHHHHHhc----CC------------Cccccc--cHHHHHH-----------------------
Q 005643 337 DRRLYI-GLPDAKQRVQIFDVHSA----GK------------QLAEDV--NFEELVF----------------------- 374 (686)
Q Consensus 337 d~~I~v-~~Pd~~eR~~Il~~~l~----~~------------~l~~dv--dl~~La~----------------------- 374 (686)
|..+.+ +.|+.+.-..|.++.+. .. .+..+. .+-..|+
T Consensus 199 DLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR 278 (331)
T PF00493_consen 199 DLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELR 278 (331)
T ss_dssp SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCC
T ss_pred CEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhc
Confidence 987665 66776555544443322 11 111110 0111222
Q ss_pred -------hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 375 -------RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 375 -------~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
.....|.+.|+.+++-|...|.-+.+..|+.+|+..|+.=
T Consensus 279 ~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L 325 (331)
T PF00493_consen 279 KESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRL 325 (331)
T ss_dssp HCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHH
Confidence 0123567788899999999998899999999999999863
No 256
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.06 E-value=0.00017 Score=75.76 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=92.4
Q ss_pred HHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHH--hCCCe---EEEeCccccchh-----------
Q 005643 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE--SGLPF---VFASGAEFTDSE----------- 244 (686)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e--~g~~f---i~is~s~~~~~~----------- 244 (686)
.+++++.+.|.... +..+-|.|+|++|+|||+||+.+++. ....| +.++.+.-....
T Consensus 3 ~~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 3 KEIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 45777777777641 35678999999999999999999977 33322 233332211000
Q ss_pred ---------hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 245 ---------KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 245 ---------~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
.........+.+.. ...+++|+||+++... .+..+...+.... .+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~------------~~~~l~~~~~~~~-----------~~~k 131 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEE------------DLEELREPLPSFS-----------SGSK 131 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHH------------HH-------HCHH-----------SS-E
T ss_pred ccccccccccccccccccchhhh-ccccceeeeeeecccc------------ccccccccccccc-----------cccc
Confidence 01112233333333 3448999999998552 2222222221111 1246
Q ss_pred EEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCC----ccccccHHHHHHhccCCCHHHHHHH
Q 005643 316 FICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ----LAEDVNFEELVFRTVGFSGADIRNL 387 (686)
Q Consensus 316 VIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~----l~~dvdl~~La~~t~G~sgadL~~l 387 (686)
||.||....... ..- .-...+.++..+.++-.++|+.+..... ...+....+|+..+.| .|-.|..+
T Consensus 132 ilvTTR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 132 ILVTTRDRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp EEEEESCGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 666776543221 111 1146899999999999999998865433 1112235678888766 45445544
No 257
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00026 Score=75.10 Aligned_cols=127 Identities=12% Similarity=0.113 Sum_probs=85.6
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCC-------eE---------EEeCccccc--hhh--hHHHHHHHHHHHHHh-
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP-------FV---------FASGAEFTD--SEK--SGAARINEMFSIARR- 260 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------fi---------~is~s~~~~--~~~--~~~~~vr~lF~~Ak~- 260 (686)
+.+.++||+|| +||+++|+++|..+-+. .- .-+-.++.. ..+ -....+|++...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 57889999996 68999999999865321 00 000111111 111 124556766655543
Q ss_pred ---cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccc
Q 005643 261 ---NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID 337 (686)
Q Consensus 261 ---~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd 337 (686)
....|++||++|.+. ....|.||..++.... ++++|.+|+.++.+-|.+++ |+
T Consensus 100 p~~~~~kV~II~~ad~m~----------~~AaNaLLKtLEEPp~-----------~t~~iL~t~~~~~lLpTI~S--Rc- 155 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH----------VNAANSLLKVIEEPQS-----------EIYIFLLTNDENKVLPTIKS--RT- 155 (290)
T ss_pred cccCCcEEEEeehhhhcC----------HHHHHHHHHHhcCCCC-----------CeEEEEEECChhhCchHHHH--cc-
Confidence 234799999999994 3467999999988543 36888888889999999999 88
Q ss_pred eEEEeCCCCHHHHHHHHH
Q 005643 338 RRLYIGLPDAKQRVQIFD 355 (686)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~ 355 (686)
..+.|+. +.+...+++.
T Consensus 156 q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 156 QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred eeeeCCC-cHHHHHHHHH
Confidence 6788865 5555555554
No 258
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.98 E-value=6.5e-05 Score=73.79 Aligned_cols=89 Identities=24% Similarity=0.300 Sum_probs=55.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchh-------h-----------------------hHH-----
Q 005643 207 VLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE-------K-----------------------SGA----- 248 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~-------~-----------------------~~~----- 248 (686)
+|++||||||||+++..++.+ .|.++++++..+-.+.. + .+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 789999999999999988654 37788888765422110 0 000
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005643 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (686)
Q Consensus 249 ~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~ 298 (686)
.....+...+....|.+|+||++..+... ........+..++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~---~~~~~~~~i~~l~~~l~~ 128 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM---EQSTARLEIRRLLFALKR 128 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc---ChHHHHHHHHHHHHHHHH
Confidence 01234444455677999999999988532 112233445556655543
No 259
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00034 Score=72.75 Aligned_cols=120 Identities=10% Similarity=0.046 Sum_probs=80.6
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCc--------------cccc--hh--hhHHHHHHHHHHHHHh---
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA--------------EFTD--SE--KSGAARINEMFSIARR--- 260 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s--------------~~~~--~~--~~~~~~vr~lF~~Ak~--- 260 (686)
.+|..+||+||+|+||..+|.++|..+-+.=-.-.|. ++.- .. .-+.+.+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4678999999999999999999998653210000111 1111 00 1123345555443321
Q ss_pred --cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccce
Q 005643 261 --NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR 338 (686)
Q Consensus 261 --~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~ 338 (686)
....|++|+++|.+. ....|.||..++.... ++++|..|+.++.+.|.+++ |. .
T Consensus 85 e~~~~KV~II~~ae~m~----------~~AaNaLLK~LEEPp~-----------~t~fiLit~~~~~lLpTI~S--RC-q 140 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN----------KQSANSLLKLIEEPPK-----------NTYGIFTTRNENNILNTILS--RC-V 140 (261)
T ss_pred hcCCCEEEEeccHhhhC----------HHHHHHHHHhhcCCCC-----------CeEEEEEECChHhCchHhhh--he-e
Confidence 235799999999994 3478999999988543 36888899999999999999 87 3
Q ss_pred EEEeCCC
Q 005643 339 RLYIGLP 345 (686)
Q Consensus 339 ~I~v~~P 345 (686)
.+.++.+
T Consensus 141 ~~~~~~~ 147 (261)
T PRK05818 141 QYVVLSK 147 (261)
T ss_pred eeecCCh
Confidence 4666665
No 260
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00054 Score=70.39 Aligned_cols=182 Identities=18% Similarity=0.225 Sum_probs=112.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC---CeEEEeCccccch------------------hhhHHHHHHHHHHHHHh-cCC
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGL---PFVFASGAEFTDS------------------EKSGAARINEMFSIARR-NAP 263 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~---~fi~is~s~~~~~------------------~~~~~~~vr~lF~~Ak~-~~P 263 (686)
-+.++|+-|||||.++|++....+- -.++++...+... .......-+.+.+..++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 3568899999999999988766543 2234443332211 01122333445544444 446
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccC------Cccc
Q 005643 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP------GRID 337 (686)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp------gRFd 337 (686)
-++++||.+.+... .... -.++..++.... ..-.|++|+=.. |.+.+++| -|++
T Consensus 133 v~l~vdEah~L~~~-------~le~-Lrll~nl~~~~~--------~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 133 VVLMVDEAHDLNDS-------ALEA-LRLLTNLEEDSS--------KLLSIVLIGQPK----LRPRLRLPVLRELEQRID 192 (269)
T ss_pred eEEeehhHhhhChh-------HHHH-HHHHHhhccccc--------CceeeeecCCcc----cchhhchHHHHhhhheEE
Confidence 89999999998532 1112 223333322111 122356665432 22222211 2787
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCC----CccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005643 338 RRLYIGLPDAKQRVQIFDVHSAGK----QLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (686)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 408 (686)
..|++++.+.++-...++.++.+- ++..+-.+..+...+.| .|.-+.+++..|...|...|...|+...+
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhc
Confidence 778899999998888888887643 33344446777777777 68889999999999998888888876654
No 261
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.92 E-value=0.00025 Score=80.87 Aligned_cols=133 Identities=20% Similarity=0.218 Sum_probs=72.1
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHH-----HHHHHHHHHH---hcCCeEEEEccchh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAA-----RINEMFSIAR---RNAPAFVFVDEIDA 273 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~-----~vr~lF~~Ak---~~~P~ILfIDEiDa 273 (686)
+..-+|||+|.||||||.+.+.+++-+-.-.+ .|+---. .+|.++- .-+.+.-+.. .....|-+|||+|.
T Consensus 460 R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsS-avGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDK 537 (804)
T KOG0478|consen 460 RGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSS-AVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDK 537 (804)
T ss_pred cccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccc-hhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhh
Confidence 34568999999999999999999986644322 2211100 0000000 0011110000 12245889999999
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCccc---CCcccccccccEEEEEecCCCC-------------CCccccccCCccc
Q 005643 274 IAGRHARKDPRRRATFEALIAQLDGDKER---TGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRID 337 (686)
Q Consensus 274 l~~~~~~~~~e~~~~l~~LL~~ld~~~~~---~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRFd 337 (686)
+. +.+-+-|++.|+...-+ .|+ -...+...-|+|+.|... .|+|.|++ |||
T Consensus 538 M~----------dStrSvLhEvMEQQTvSIAKAGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFD 604 (804)
T KOG0478|consen 538 MS----------DSTRSVLHEVMEQQTLSIAKAGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFD 604 (804)
T ss_pred hh----------HHHHHHHHHHHHHhhhhHhhcce-eeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhc
Confidence 93 22334555555432111 010 001112246788888532 57899999 999
Q ss_pred eEE-EeCCCCHHH
Q 005643 338 RRL-YIGLPDAKQ 349 (686)
Q Consensus 338 ~~I-~v~~Pd~~e 349 (686)
.++ -++.||...
T Consensus 605 LIylllD~~DE~~ 617 (804)
T KOG0478|consen 605 LIFLLLDKPDERS 617 (804)
T ss_pred EEEEEecCcchhH
Confidence 754 457787763
No 262
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.92 E-value=0.0001 Score=92.43 Aligned_cols=176 Identities=22% Similarity=0.256 Sum_probs=97.6
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCe---EEEeCcc---
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF---VFASGAE--- 239 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~f---i~is~s~--- 239 (686)
+...|++++|.++..+.+..++.. +....+-+-|+|++|+|||+||+++++....+| ++++...
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 456789999988665555554431 223457789999999999999999988765443 1221100
Q ss_pred ----ccc--------hhhhHHHHHHH-------------HHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHH
Q 005643 240 ----FTD--------SEKSGAARINE-------------MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIA 294 (686)
Q Consensus 240 ----~~~--------~~~~~~~~vr~-------------lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~ 294 (686)
+.. ........+.. ..+..-...+.+|+||++|... .+..+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~------------~l~~L~~ 316 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQD------------VLDALAG 316 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHH------------HHHHHHh
Confidence 000 00000000111 1111123456899999987431 2333333
Q ss_pred HhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccH----H
Q 005643 295 QLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF----E 370 (686)
Q Consensus 295 ~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl----~ 370 (686)
..+.+.. +-.||.||..... ++....++.+.++.|+.++..++|..++-+..... .++ .
T Consensus 317 ~~~~~~~-----------GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~ 379 (1153)
T PLN03210 317 QTQWFGS-----------GSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELAS 379 (1153)
T ss_pred hCccCCC-----------CcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHH
Confidence 2222211 1355666764333 32234678899999999999999998765433222 122 3
Q ss_pred HHHHhccCCC
Q 005643 371 ELVFRTVGFS 380 (686)
Q Consensus 371 ~La~~t~G~s 380 (686)
+++....|..
T Consensus 380 ~iv~~c~GLP 389 (1153)
T PLN03210 380 EVALRAGNLP 389 (1153)
T ss_pred HHHHHhCCCc
Confidence 4555566643
No 263
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.90 E-value=0.00037 Score=76.90 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHH----hCCCeEEEeCccccchhhhHHHHHHHHHH
Q 005643 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAEFTDSEKSGAARINEMFS 256 (686)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e----~g~~fi~is~s~~~~~~~~~~~~vr~lF~ 256 (686)
..|..++.|+... .++++.||||||||+++.+++.. .| -+++.+.+.... .. ..+.
T Consensus 197 ~~L~rl~~fve~~-----------~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L---~~---~~lg 256 (449)
T TIGR02688 197 LLLARLLPLVEPN-----------YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI---ST---RQIG 256 (449)
T ss_pred HHHHhhHHHHhcC-----------CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH---HH---HHHh
Confidence 3455555665544 58999999999999999998765 24 122222222211 11 1111
Q ss_pred HHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC
Q 005643 257 IARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (686)
Q Consensus 257 ~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (686)
. -....+|+|||+..+.-. .....++.|-..|....-..+........++++++-+|.
T Consensus 257 ~--v~~~DlLI~DEvgylp~~------~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 257 L--VGRWDVVAFDEVATLKFA------KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred h--hccCCEEEEEcCCCCcCC------chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 1 133579999999886421 122345556666665444444444455567888887764
No 264
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00043 Score=73.90 Aligned_cols=127 Identities=9% Similarity=0.120 Sum_probs=89.0
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCC-----------C--eEEEeCccccchhhhHHHHHHHHHHHHHh-----cCC
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-----------P--FVFASGAEFTDSEKSGAARINEMFSIARR-----NAP 263 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~-----------~--fi~is~s~~~~~~~~~~~~vr~lF~~Ak~-----~~P 263 (686)
+.+..+||+|+.|.||+.+|+++|+.+.+ | +..++.. ...-+...++.+.+.... ...
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~~i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DKDLSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CCcCCHHHHHHHHHHhccCCcccCCc
Confidence 46678999999999999999999988622 1 2222200 001122345555554422 245
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeC
Q 005643 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343 (686)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~ 343 (686)
.|++||++|.+. ....|.||..|+..... +++|.+|+.++.+-+.+++ |+ ..+++.
T Consensus 92 KvvII~~~e~m~----------~~a~NaLLK~LEEPp~~-----------t~~il~~~~~~kll~TI~S--Rc-~~~~f~ 147 (299)
T PRK07132 92 KILIIKNIEKTS----------NSLLNALLKTIEEPPKD-----------TYFLLTTKNINKVLPTIVS--RC-QVFNVK 147 (299)
T ss_pred eEEEEecccccC----------HHHHHHHHHHhhCCCCC-----------eEEEEEeCChHhChHHHHh--Ce-EEEECC
Confidence 799999998883 34678999999885543 5677777788999999988 77 679999
Q ss_pred CCCHHHHHHHHHH
Q 005643 344 LPDAKQRVQIFDV 356 (686)
Q Consensus 344 ~Pd~~eR~~Il~~ 356 (686)
+|+.++..+.+..
T Consensus 148 ~l~~~~l~~~l~~ 160 (299)
T PRK07132 148 EPDQQKILAKLLS 160 (299)
T ss_pred CCCHHHHHHHHHH
Confidence 9998888777653
No 265
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.86 E-value=6.2e-05 Score=84.82 Aligned_cols=77 Identities=25% Similarity=0.406 Sum_probs=57.2
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhHH---------------HHHHHHHHHHHhc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA---------------ARINEMFSIARRN 261 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~~---------------~~vr~lF~~Ak~~ 261 (686)
|..+..-++|+|+||+|||+|+..+|... +.++++++..+..+....-+ ..+..+++..+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 46666778999999999999999998754 67889999876443221111 1245666677777
Q ss_pred CCeEEEEccchhhhc
Q 005643 262 APAFVFVDEIDAIAG 276 (686)
Q Consensus 262 ~P~ILfIDEiDal~~ 276 (686)
.|.+|+||++..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 899999999999864
No 266
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.86 E-value=6.9e-05 Score=82.36 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=55.9
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhh---------------HHHHHHHHHHHHHhc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS---------------GAARINEMFSIARRN 261 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~---------------~~~~vr~lF~~Ak~~ 261 (686)
|+.+..-++|+|+||+|||+|+..+|... +.+++++++.+-.+.... ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45666778999999999999999998754 468888887653322111 011245666677777
Q ss_pred CCeEEEEccchhhhc
Q 005643 262 APAFVFVDEIDAIAG 276 (686)
Q Consensus 262 ~P~ILfIDEiDal~~ 276 (686)
.|.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999999864
No 267
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.84 E-value=2.4e-05 Score=70.59 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 005643 207 VLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g 229 (686)
|.|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988764
No 268
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.80 E-value=0.00012 Score=74.51 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=50.7
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccch-hhhH-----------------------HHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-EKSG-----------------------AARIN 252 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~-~~~~-----------------------~~~vr 252 (686)
|.+...-++++||||+|||++|..+|.+ .+.+++++++..+... .... ...++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 5566677899999999999999999864 3788999988733211 1000 01112
Q ss_pred HHHHHHHhcCCeEEEEccchhhhc
Q 005643 253 EMFSIARRNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 253 ~lF~~Ak~~~P~ILfIDEiDal~~ 276 (686)
.+....+ ..+.+|+||-+.++..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~ 121 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYR 121 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhH
Confidence 2222222 5789999999999864
No 269
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.69 E-value=0.00014 Score=74.20 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=41.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcc----------ccch-hhhHHHHHHHHHHHHH--hcCCeEEEEc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE----------FTDS-EKSGAARINEMFSIAR--RNAPAFVFVD 269 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~----------~~~~-~~~~~~~vr~lF~~Ak--~~~P~ILfID 269 (686)
.|..+|+||+||+|||++|+.+++. ..++..+++. .... .......+.+.+..+. ...+.+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3677999999999999999999632 2233333321 0000 0011122333333332 2446799999
Q ss_pred cchhhhc
Q 005643 270 EIDAIAG 276 (686)
Q Consensus 270 EiDal~~ 276 (686)
.++.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999853
No 270
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.68 E-value=0.00024 Score=76.35 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=52.8
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchh-----------------hhHHHHHHHHHHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----------------KSGAARINEMFSIAR 259 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~-----------------~~~~~~vr~lF~~Ak 259 (686)
|.+..+-++++||||||||+||-.++.++ |.+++++++....... ......+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666778999999999999988775543 7788888765533210 011222333333445
Q ss_pred hcCCeEEEEccchhhhcc
Q 005643 260 RNAPAFVFVDEIDAIAGR 277 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~ 277 (686)
...+.+|+||-+.++.++
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 677899999999999754
No 271
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.68 E-value=0.00015 Score=86.91 Aligned_cols=204 Identities=19% Similarity=0.239 Sum_probs=116.6
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCch--hhhhhCCcc-Cc-eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPM--QYYERGVQF-VR-GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~--~~~~~g~~~-p~-gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
..+..-.++.|......-+....+-.+.+. .|...+... .+ .+|++||||.|||+.+.++|.+.|..++..+.++.
T Consensus 314 ~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~ 393 (871)
T KOG1968|consen 314 YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDV 393 (871)
T ss_pred cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccc
Confidence 344445677777654332222222222221 232222111 12 36999999999999999999999999999998876
Q ss_pred cchh------hh--HHHHHHHHHH---HHHh-cCC-eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc
Q 005643 241 TDSE------KS--GAARINEMFS---IARR-NAP-AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR 307 (686)
Q Consensus 241 ~~~~------~~--~~~~vr~lF~---~Ak~-~~P-~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~ 307 (686)
-... +. +...+...|. .... +.. -||++||+|.+.+. +...-..+.++....
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~----dRg~v~~l~~l~~ks----------- 458 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE----DRGGVSKLSSLCKKS----------- 458 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch----hhhhHHHHHHHHHhc-----------
Confidence 5321 11 1112333331 0000 111 38999999988641 112222334444311
Q ss_pred ccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHH
Q 005643 308 FSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRN 386 (686)
Q Consensus 308 ~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~ 386 (686)
.+-+|+++|..+.....-+. |-...++|+.|+...+..-+...+...... .+-.++++.+.+ ++||++
T Consensus 459 -----~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~ 527 (871)
T KOG1968|consen 459 -----SRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQ 527 (871)
T ss_pred -----cCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHH
Confidence 13577788876655543333 433568999999999887776655433322 233467777665 668888
Q ss_pred HHHHHHHH
Q 005643 387 LVNESGIM 394 (686)
Q Consensus 387 lv~eA~~~ 394 (686)
.++.-...
T Consensus 528 ~i~~lq~~ 535 (871)
T KOG1968|consen 528 IIMQLQFW 535 (871)
T ss_pred HHHHHhhh
Confidence 88766555
No 272
>PHA00729 NTP-binding motif containing protein
Probab=97.68 E-value=7e-05 Score=76.39 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGL 230 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~ 230 (686)
.+++|+|+||||||++|.++|.+++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999998763
No 273
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.66 E-value=0.00029 Score=73.73 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=63.2
Q ss_pred ceecCcccHH-HHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeE--EEeCccccch
Q 005643 172 EVVLGGDVWD-LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFV--FASGAEFTDS 243 (686)
Q Consensus 172 dvvG~~e~k~-~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi--~is~s~~~~~ 243 (686)
-+.||.-+++ .++.+-.++.++. -+.|--+=|||++||||.+.++.||+.. ..|++ ++.-..|...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 3567877776 4555556777772 2346666789999999999999999865 22433 2333344433
Q ss_pred hh-h--HHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 005643 244 EK-S--GAARINEMFSIARRNAPAFVFVDEIDAIA 275 (686)
Q Consensus 244 ~~-~--~~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (686)
.. . -.+..+.+-..+..++.+|.++||.|.+.
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 11 1 12223344455567777899999999995
No 274
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.65 E-value=0.00039 Score=84.41 Aligned_cols=184 Identities=15% Similarity=0.176 Sum_probs=104.2
Q ss_pred CccCceEEEEcCCCCcHHHH-HHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHHHHhc----------C----CeE
Q 005643 201 VQFVRGVLLSGPPGTGKTLF-ARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRN----------A----PAF 265 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~L-AralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~----------~----P~I 265 (686)
....|+++++||||+|||++ .-++-.+.-..+++++.+.-.... ..++.+-+..... . --|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~----s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTP----SKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCH----HHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 44578999999999999985 667778888888888866543321 1122221111100 0 138
Q ss_pred EEEccchhhhccCCCCChhHHH-HHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccc---eEEE
Q 005643 266 VFVDEIDAIAGRHARKDPRRRA-TFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRID---RRLY 341 (686)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~-~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd---~~I~ 341 (686)
||.|||. + ++...-.++..- .+.+|+ +-+|+-.... ..+..-+++++.+++|.+..... .--|-||- ..++
T Consensus 1567 LFcDeIn-L-p~~~~y~~~~vI~FlR~l~-e~QGfw~s~~-~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~~v~vf 1641 (3164)
T COG5245 1567 LFCDEIN-L-PYGFEYYPPTVIVFLRPLV-ERQGFWSSIA-VSWVTICGIILYGACNPGTDEGR-VKYYERFIRKPVFVF 1641 (3164)
T ss_pred EEeeccC-C-ccccccCCCceEEeeHHHH-Hhcccccchh-hhHhhhcceEEEccCCCCCCccc-CccHHHHhcCceEEE
Confidence 9999999 5 332211111111 112222 2234433221 22334467999999998765320 11112332 3688
Q ss_pred eCCCCHHHHHHHHHHHhcCCCcccc-------------ccH--------HHHHHhccCCCHHHHHHHHHHHHH
Q 005643 342 IGLPDAKQRVQIFDVHSAGKQLAED-------------VNF--------EELVFRTVGFSGADIRNLVNESGI 393 (686)
Q Consensus 342 v~~Pd~~eR~~Il~~~l~~~~l~~d-------------vdl--------~~La~~t~G~sgadL~~lv~eA~~ 393 (686)
+..|.......|.+.++.+.-+..+ +.+ ....+...||+|++|...++..--
T Consensus 1642 ~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ 1714 (3164)
T COG5245 1642 CCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFG 1714 (3164)
T ss_pred ecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHh
Confidence 8999999999888876654332211 111 112223478999999999884443
No 275
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.65 E-value=0.00048 Score=69.82 Aligned_cols=40 Identities=38% Similarity=0.484 Sum_probs=32.3
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~ 239 (686)
|.+...-++++|+||+|||+++..+|.+. |.++++++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 45666679999999999999999998764 66888887653
No 276
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.65 E-value=5.6e-05 Score=75.53 Aligned_cols=122 Identities=15% Similarity=0.182 Sum_probs=59.2
Q ss_pred EEEEcCCCCcHHHHHHHH-HH---HhCCCeEEEeCcccc-----chhhhHHH-------------HHHHHHHHHHhcCCe
Q 005643 207 VLLSGPPGTGKTLFARTL-AK---ESGLPFVFASGAEFT-----DSEKSGAA-------------RINEMFSIARRNAPA 264 (686)
Q Consensus 207 vLL~GPPGTGKT~LAral-A~---e~g~~fi~is~s~~~-----~~~~~~~~-------------~vr~lF~~Ak~~~P~ 264 (686)
.+++|.||+|||+.|-.. .. ..|.+++. +...+. ...+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987655 33 33777665 443221 10000000 011222222222568
Q ss_pred EEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCC
Q 005643 265 FVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (686)
Q Consensus 265 ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~ 344 (686)
+|+|||++.+.+.+........ ..+..+.... ..++-||.+|..+..+|+.+++ +.+.++.+..
T Consensus 82 liviDEa~~~~~~r~~~~~~~~----~~~~~l~~hR----------h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVP----EIIEFLAQHR----------HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHHHGGGGCC----------CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE
T ss_pred EEEEECChhhcCCCccccccch----HHHHHHHHhC----------cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEe
Confidence 9999999999876544222222 2223332211 2246788899999999999987 8888777755
Q ss_pred C
Q 005643 345 P 345 (686)
Q Consensus 345 P 345 (686)
+
T Consensus 146 ~ 146 (193)
T PF05707_consen 146 L 146 (193)
T ss_dssp -
T ss_pred e
Confidence 4
No 277
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.63 E-value=4.4e-05 Score=69.61 Aligned_cols=30 Identities=40% Similarity=0.889 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
|+|.||||+||||+|+.+|+.+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877654
No 278
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.62 E-value=0.0007 Score=69.65 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=49.3
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchh-------h------------------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE-------K------------------------ 245 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~-------~------------------------ 245 (686)
|.+...-+++.||||||||+++..++.. -|.+.++++..+-.... +
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 4556677999999999999998665443 36777777755321110 0
Q ss_pred -hHHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 005643 246 -SGAARINEMFSIARRNAPAFVFVDEIDAIA 275 (686)
Q Consensus 246 -~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (686)
.....+..+...+....|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 001223344555555678999999999875
No 279
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.61 E-value=0.00032 Score=75.10 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=88.8
Q ss_pred CcccHHHHHHHHHHhCCchhhh----hh---CCccCceEEEEcCCCCcHHHHHHHHHHHhCCCe-EEEeCccccchhhhH
Q 005643 176 GGDVWDLLDELMIYMGNPMQYY----ER---GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF-VFASGAEFTDSEKSG 247 (686)
Q Consensus 176 ~~e~k~~L~elv~~l~~p~~~~----~~---g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~f-i~is~s~~~~~~~~~ 247 (686)
+..+.+.|..+-+.+..+..-. .+ ...+++|+.|||+-|.|||+|.-..-..+-.+- ..+....|+..+...
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 3445556666665443332111 12 234789999999999999999999877664432 223333443332211
Q ss_pred HHH-------HHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 248 AAR-------INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 248 ~~~-------vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
... +..+-.... ....||+|||+..= +-.....+..|+.+|-. ++|.+++|+
T Consensus 110 l~~l~g~~dpl~~iA~~~~-~~~~vLCfDEF~Vt-------DI~DAMiL~rL~~~Lf~-------------~GV~lvaTS 168 (367)
T COG1485 110 LHTLQGQTDPLPPIADELA-AETRVLCFDEFEVT-------DIADAMILGRLLEALFA-------------RGVVLVATS 168 (367)
T ss_pred HHHHcCCCCccHHHHHHHH-hcCCEEEeeeeeec-------ChHHHHHHHHHHHHHHH-------------CCcEEEEeC
Confidence 111 111111111 12359999998631 22345577888888754 248999999
Q ss_pred CC-CCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccH
Q 005643 321 NR-PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF 369 (686)
Q Consensus 321 N~-p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl 369 (686)
|. |+.|= +++|.+.-.+ | -.++++.++.-..++...|.
T Consensus 169 N~~P~~LY-----~dGlqR~~FL--P----~I~li~~~~~v~~vD~~~DY 207 (367)
T COG1485 169 NTAPDNLY-----KDGLQRERFL--P----AIDLIKSHFEVVNVDGPVDY 207 (367)
T ss_pred CCChHHhc-----ccchhHHhhH--H----HHHHHHHheEEEEecCCccc
Confidence 97 34432 2333332222 1 34567777665555555554
No 280
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.59 E-value=0.0004 Score=71.36 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=33.1
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~ 239 (686)
|.+.+..++++|+||||||+++.+++.+ .|.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 5677888999999999999999999654 377888888654
No 281
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.58 E-value=0.00055 Score=75.76 Aligned_cols=227 Identities=17% Similarity=0.206 Sum_probs=119.3
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhC--CccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHH
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERG--VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAA 249 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g--~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~ 249 (686)
+|.|.+++|+.|--++- -.+.+-..-| ++..-+|+|.|.||..||-|.+++.+-+-...+..- .- .+.+|.+++
T Consensus 343 EIyGheDVKKaLLLlLV--Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTG-rG-SSGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLV--GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTG-RG-SSGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhh--CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecC-CC-CCccccchh
Confidence 56788888876644332 2222222223 445677999999999999999999886655444221 11 011222232
Q ss_pred HHHHHHH--HH------HhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCc---ccCCcccccccccEEEEE
Q 005643 250 RINEMFS--IA------RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDK---ERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 250 ~vr~lF~--~A------k~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~---~~~~~~~~~~~~~ViVIa 318 (686)
-+++-.. .. --....|-+|||+|.+.... + ..+-+.|+... .+.|+. .+.+...-|+|
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D-------R---tAIHEVMEQQTISIaKAGI~-TtLNAR~sILa 487 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD-------R---TAIHEVMEQQTISIAKAGIN-TTLNARTSILA 487 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh-------h---HHHHHHHHhhhhhhhhhccc-cchhhhHHhhh
Confidence 2221100 00 00113588999999995211 1 11111121110 001110 11223356788
Q ss_pred ecCCCC-------------CCccccccCCccceEEE-eCCCCHHHHHHHHH----HHhcCCCcccc---ccH------HH
Q 005643 319 ATNRPD-------------ELDLEFVRPGRIDRRLY-IGLPDAKQRVQIFD----VHSAGKQLAED---VNF------EE 371 (686)
Q Consensus 319 aTN~p~-------------~LD~aLlrpgRFd~~I~-v~~Pd~~eR~~Il~----~~l~~~~l~~d---vdl------~~ 371 (686)
|.|... .|+.||++ |||..+- .+.||.+.-..+-+ .|.....-..+ ++. -.
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~ 565 (721)
T KOG0482|consen 488 AANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS 565 (721)
T ss_pred hcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH
Confidence 888743 58999999 9997444 36787665554443 23222111100 111 11
Q ss_pred HHHhcc-----------------------------CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 372 LVFRTV-----------------------------GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 372 La~~t~-----------------------------G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
+|+.-. -.|++-|-.+++-+..+|.-+-...+..+|+.+|+.-+
T Consensus 566 ~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 566 LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 111111 23567777777777777777777778888888887654
No 282
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.53 E-value=0.00055 Score=70.01 Aligned_cols=100 Identities=18% Similarity=0.153 Sum_probs=60.4
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCccccch--hh-----------------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS--EK----------------------- 245 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~~~~~--~~----------------------- 245 (686)
|.+...-+.|+||||||||+++..++... +..++++++.+-... ..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56667778999999999999999997543 257788887652111 00
Q ss_pred ---hHHHHHHHHHHHHHhc-CCeEEEEccchhhhccCCCCC---hhHHHHHHHHHHHhcCC
Q 005643 246 ---SGAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKD---PRRRATFEALIAQLDGD 299 (686)
Q Consensus 246 ---~~~~~vr~lF~~Ak~~-~P~ILfIDEiDal~~~~~~~~---~e~~~~l~~LL~~ld~~ 299 (686)
.....+..+-...... .+.+|+||-+.++......+. .++.+.+..++..|...
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 0011112222233344 789999999998853211111 34445566666666544
No 283
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.53 E-value=0.00076 Score=68.77 Aligned_cols=98 Identities=24% Similarity=0.299 Sum_probs=60.7
Q ss_pred hCCccCceEEEEcCCCCcHHHHHHHHHHH---h-CCCeEEEeCccccchh--------------------------h---
Q 005643 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKE---S-GLPFVFASGAEFTDSE--------------------------K--- 245 (686)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAralA~e---~-g~~fi~is~s~~~~~~--------------------------~--- 245 (686)
.|.+....+|+.||||||||+|+..++.+ . |-++++++..+-.+.. .
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 36777888999999999999999887543 3 8898888865422100 0
Q ss_pred -----hHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005643 246 -----SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (686)
Q Consensus 246 -----~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~ 298 (686)
........+.+..+...+.+++||-+..+. .. .........+..+...+..
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~-~~~~~~r~~l~~l~~~l~~ 149 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LY-DDPEELRRFLRALIKFLKS 149 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TS-SSGGGHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hc-CCHHHHHHHHHHHHHHHHH
Confidence 011123344444555667899999999992 21 2233344566667766644
No 284
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.53 E-value=0.00042 Score=78.28 Aligned_cols=77 Identities=21% Similarity=0.331 Sum_probs=55.1
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhHH---------------HHHHHHHHHHHhc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA---------------ARINEMFSIARRN 261 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~~---------------~~vr~lF~~Ak~~ 261 (686)
|+.+..-+||.|+||+|||+|+..+|... +.+++++++.+-......-+ ..+..+...+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 46666778999999999999999997654 46788998765432211111 1244555666677
Q ss_pred CCeEEEEccchhhhc
Q 005643 262 APAFVFVDEIDAIAG 276 (686)
Q Consensus 262 ~P~ILfIDEiDal~~ 276 (686)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999854
No 285
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.51 E-value=0.00058 Score=73.55 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=52.5
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccch-h----------------hhHHHHHHHHHHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-E----------------KSGAARINEMFSIAR 259 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~-~----------------~~~~~~vr~lF~~Ak 259 (686)
|.+..+-++++||||||||+||-.++.+ .|..+++++...-... . ......+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 4566667899999999999999988654 4778888887542221 0 011122222333345
Q ss_pred hcCCeEEEEccchhhhcc
Q 005643 260 RNAPAFVFVDEIDAIAGR 277 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~ 277 (686)
...+.+|+||-+-++.++
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 677899999999999754
No 286
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.51 E-value=0.0006 Score=69.33 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=60.7
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---C------CCeEEEeCccccch--hhh----------------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---G------LPFVFASGAEFTDS--EKS---------------------- 246 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g------~~fi~is~s~~~~~--~~~---------------------- 246 (686)
|.+...-+.|+||||+|||+++..+|... + ..++++++..-... ...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 56667778999999999999999997653 3 56778877652111 000
Q ss_pred HHHHHHHHHHHH----HhcCCeEEEEccchhhhccCCCCC---hhHHHHHHHHHHHhcCCc
Q 005643 247 GAARINEMFSIA----RRNAPAFVFVDEIDAIAGRHARKD---PRRRATFEALIAQLDGDK 300 (686)
Q Consensus 247 ~~~~vr~lF~~A----k~~~P~ILfIDEiDal~~~~~~~~---~e~~~~l~~LL~~ld~~~ 300 (686)
....+...+... ....+++|+||-+..+......+. .++.+.+.+++..|..+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLA 155 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 011112222222 245678999999998864321122 234455666666665543
No 287
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.50 E-value=0.0006 Score=70.88 Aligned_cols=76 Identities=25% Similarity=0.430 Sum_probs=52.6
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHH------HhCCCeEEEeCccccchhhhH--HHHHHHHHHHHH--------hcCC
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAK------ESGLPFVFASGAEFTDSEKSG--AARINEMFSIAR--------RNAP 263 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~------e~g~~fi~is~s~~~~~~~~~--~~~vr~lF~~Ak--------~~~P 263 (686)
.++....+||.||.|.||++||+.|-. .+.-+|+.++|..+......+ ...++..|.-|+ ....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 344556799999999999999999843 457799999999986542211 122333443332 2234
Q ss_pred eEEEEccchhhh
Q 005643 264 AFVFVDEIDAIA 275 (686)
Q Consensus 264 ~ILfIDEiDal~ 275 (686)
..+|+|||..++
T Consensus 284 gmlfldeigelg 295 (531)
T COG4650 284 GMLFLDEIGELG 295 (531)
T ss_pred ceEehHhhhhcC
Confidence 689999999986
No 288
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.49 E-value=0.0001 Score=71.33 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=30.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
++..|+|+|+||||||++|+++|+.+|.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 567899999999999999999999999988843
No 289
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.49 E-value=0.0063 Score=67.73 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=71.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhH
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRR 285 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~ 285 (686)
-++|+||.++|||++++.+.....-.+++++..+.........+..+. +..+.....+.||||||+.+-+ .
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~-~~~~~~~~~~yifLDEIq~v~~--------W 109 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRA-YIELKEREKSYIFLDEIQNVPD--------W 109 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHH-HHHhhccCCceEEEecccCchh--------H
Confidence 789999999999999988888765556777666554442222222222 2222222457999999998831 2
Q ss_pred HHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHH
Q 005643 286 RATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352 (686)
Q Consensus 286 ~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~ 352 (686)
...+..+. |.... .|++.+++...-....+-.=+||. ..+.+.+.+..+...
T Consensus 110 ~~~lk~l~---d~~~~-----------~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 110 ERALKYLY---DRGNL-----------DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred HHHHHHHH---ccccc-----------eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 33333333 33221 134444333222222222335795 678888889888865
No 290
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.48 E-value=0.00068 Score=73.44 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=88.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCC--eEEEeCccccchhhhHH--------------------HHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP--FVFASGAEFTDSEKSGA--------------------ARINEMFSIAR 259 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~--fi~is~s~~~~~~~~~~--------------------~~vr~lF~~Ak 259 (686)
.+|+|++|||.-|||||+|.-..-..+--. =-.+...+|+-.+..-. .-+.-+-....
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa 191 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA 191 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHh
Confidence 469999999999999999988775432110 00111122222111000 00111111111
Q ss_pred hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC-CCCCc-cccccCCccc
Q 005643 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR-PDELD-LEFVRPGRID 337 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~-p~~LD-~aLlrpgRFd 337 (686)
...++|++||+..- +-...-.+++|...|-. .+|+++||+|+ |+.|- ..+.|
T Consensus 192 -~ea~lLCFDEfQVT-------DVADAmiL~rLf~~Lf~-------------~GvVlvATSNR~P~dLYknGlQR----- 245 (467)
T KOG2383|consen 192 -EEAILLCFDEFQVT-------DVADAMILKRLFEHLFK-------------NGVVLVATSNRAPEDLYKNGLQR----- 245 (467)
T ss_pred -hhceeeeechhhhh-------hHHHHHHHHHHHHHHHh-------------CCeEEEEeCCCChHHHhhcchhh-----
Confidence 12479999999743 22233466777776643 24899999998 44443 23333
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhc-cC--CCHH-HHHHHHHHHHH
Q 005643 338 RRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRT-VG--FSGA-DIRNLVNESGI 393 (686)
Q Consensus 338 ~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t-~G--~sga-dL~~lv~eA~~ 393 (686)
...+| -..+|+.++.-..+...+|....++.. .+ |.+. |...++++--.
T Consensus 246 -~~F~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 246 -ENFIP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred -hhhhh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 33332 457788888888888888888433321 11 3333 77777776653
No 291
>PRK08118 topology modulation protein; Reviewed
Probab=97.47 E-value=0.00024 Score=69.43 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=30.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s 238 (686)
.|++.||||+|||++|+.|++.++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999999877743
No 292
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.42 E-value=0.0011 Score=66.55 Aligned_cols=120 Identities=26% Similarity=0.346 Sum_probs=65.2
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA 279 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~ 279 (686)
|.+....++|.|+-|+|||++.+.|+.+ ++.-+...... .. .... ... -.|+.|||++.+..+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~--kd---~~~~----l~~--~~iveldEl~~~~k~-- 110 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDD--KD---FLEQ----LQG--KWIVELDELDGLSKK-- 110 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCC--cH---HHHH----HHH--hHheeHHHHhhcchh--
Confidence 5666777899999999999999999665 22111111111 11 1111 111 148999999988521
Q ss_pred CCChhHHHHHHHHHHHh-cCCcccCCcccccccccEEEEEecCCCCCC-ccccccCCccceEEEeCC
Q 005643 280 RKDPRRRATFEALIAQL-DGDKERTGIDRFSLRQAVIFICATNRPDEL-DLEFVRPGRIDRRLYIGL 344 (686)
Q Consensus 280 ~~~~e~~~~l~~LL~~l-d~~~~~~~~~~~~~~~~ViVIaaTN~p~~L-D~aLlrpgRFd~~I~v~~ 344 (686)
....+..++..- +.....-+......+...++|+|||..+-| |+.=-| || ..|.+..
T Consensus 111 -----~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 111 -----DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred -----hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 122344444432 111111111112233457899999998755 333445 77 4555544
No 293
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.42 E-value=0.00083 Score=62.28 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=38.2
Q ss_pred ceecCcccHH-HHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 172 EVVLGGDVWD-LLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 172 dvvG~~e~k~-~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.|.||.-+++ .++.+..++.++ .-+.|--+-|+|+||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5778887766 455555677665 12345666799999999999999999974
No 294
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.37 E-value=0.0016 Score=63.85 Aligned_cols=90 Identities=28% Similarity=0.367 Sum_probs=56.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHH--------------------HHHHHHHHHhcCCeE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR--------------------INEMFSIARRNAPAF 265 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~--------------------vr~lF~~Ak~~~P~I 265 (686)
-+|+.|+||+|||++|..++.+.+.++++++....... +..++ +..++... ...+.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~--e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~ 79 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD--EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRC 79 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH--HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCE
Confidence 48999999999999999999998888888776553222 11111 22333221 133568
Q ss_pred EEEccchhhhccCCCCC--hhHHHHHHHHHHHhcC
Q 005643 266 VFVDEIDAIAGRHARKD--PRRRATFEALIAQLDG 298 (686)
Q Consensus 266 LfIDEiDal~~~~~~~~--~e~~~~l~~LL~~ld~ 298 (686)
++||-+..+.......+ ......+..++..+..
T Consensus 80 VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 80 VLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred EEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHc
Confidence 99999998864322111 2223445566666655
No 295
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.37 E-value=0.00059 Score=77.08 Aligned_cols=33 Identities=33% Similarity=0.326 Sum_probs=27.9
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
+..-+|||+|.|||||+-+.|.+++-+...++.
T Consensus 480 RGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~t 512 (854)
T KOG0477|consen 480 RGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFT 512 (854)
T ss_pred ccceeEEEecCCCccHHHHHHHHHhcCcceeEe
Confidence 445679999999999999999999987766654
No 296
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.002 Score=61.93 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=23.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+.+.-++++|+||+|||+++..+|..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345679999999999999999999766
No 297
>PF14516 AAA_35: AAA-like domain
Probab=97.31 E-value=0.029 Score=60.97 Aligned_cols=173 Identities=15% Similarity=0.143 Sum_probs=92.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccch----hh----h------------------------HH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS----EK----S------------------------GA 248 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~----~~----~------------------------~~ 248 (686)
..-+.++||..+|||++...+.+.+ |...+++++..+... .. . ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4568999999999999998886544 788888888764321 00 0 00
Q ss_pred HHHHHHHHH---HHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe-cCCCC
Q 005643 249 ARINEMFSI---ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA-TNRPD 324 (686)
Q Consensus 249 ~~vr~lF~~---Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa-TN~p~ 324 (686)
......|+. .....|-||+|||+|.+... ..-....+ .+|..+-...... ..-..+.+|.+ +..+.
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~----~~~~~dF~-~~LR~~~~~~~~~-----~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY----PQIADDFF-GLLRSWYEQRKNN-----PIWQKLRLILAGSTEDY 180 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccC----cchHHHHH-HHHHHHHHhcccC-----cccceEEEEEecCcccc
Confidence 112233332 12256889999999999642 11112222 2333222211100 01112223322 22222
Q ss_pred CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHH
Q 005643 325 ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (686)
Q Consensus 325 ~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~e 390 (686)
.....=.+|=.+...|.++.-+.++-..+++.|-. .+.... ++.|-..|.|. |.=+..+|..
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~--~~~~~~-~~~l~~~tgGh-P~Lv~~~~~~ 242 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL--EFSQEQ-LEQLMDWTGGH-PYLVQKACYL 242 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc--cCCHHH-HHHHHHHHCCC-HHHHHHHHHH
Confidence 21111123322344677777789999999887743 233332 78888888884 4434444443
No 298
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.31 E-value=0.0022 Score=66.23 Aligned_cols=41 Identities=37% Similarity=0.571 Sum_probs=32.9
Q ss_pred hCCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCcc
Q 005643 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (686)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~ 239 (686)
.|.+....+|++||||||||++|-.++.+ .|.+.++++..+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 36777888999999999999999877543 477888887655
No 299
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.30 E-value=0.0018 Score=65.12 Aligned_cols=104 Identities=23% Similarity=0.322 Sum_probs=59.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH-----hCCCe-------------EEEeCccccc----hhhhHHHHHHHHHHHHHhcC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE-----SGLPF-------------VFASGAEFTD----SEKSGAARINEMFSIARRNA 262 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e-----~g~~f-------------i~is~s~~~~----~~~~~~~~vr~lF~~Ak~~~ 262 (686)
+.++|.||+|+|||++.|.++.. .|.++ ..++..+-.. .......++..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 67899999999999999999853 34432 1111111100 11112245677777776567
Q ss_pred CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCC
Q 005643 263 PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL 326 (686)
Q Consensus 263 P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L 326 (686)
|.++++||.-+=. ...........++..+... +..+|.+|+.++.+
T Consensus 106 p~llllDEp~~gl-----D~~~~~~l~~~ll~~l~~~-------------~~tiiivTH~~~~~ 151 (199)
T cd03283 106 PVLFLLDEIFKGT-----NSRERQAASAAVLKFLKNK-------------NTIGIISTHDLELA 151 (199)
T ss_pred CeEEEEecccCCC-----CHHHHHHHHHHHHHHHHHC-------------CCEEEEEcCcHHHH
Confidence 8999999974221 1112223344556655321 13667777776543
No 300
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.30 E-value=0.011 Score=63.36 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=24.6
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
..|..|.|+|+-|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688899999999999999999977664
No 301
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.29 E-value=0.00091 Score=70.44 Aligned_cols=112 Identities=23% Similarity=0.371 Sum_probs=64.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCcccc----------------ch-------hhhHHHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFT----------------DS-------EKSGAARINEMFSIAR 259 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s~~~----------------~~-------~~~~~~~vr~lF~~Ak 259 (686)
++++|.||||+|||+|.+++++...- .-+.+++.++. .. +.....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999987532 11222221111 00 0001112335666777
Q ss_pred hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCcccc--------c
Q 005643 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF--------V 331 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aL--------l 331 (686)
.+.|.||++||+.. ...+..++..+.. ++.+|++|+.++ +..+. +
T Consensus 192 ~~~P~villDE~~~------------~e~~~~l~~~~~~--------------G~~vI~ttH~~~-~~~~~~r~~~~~l~ 244 (270)
T TIGR02858 192 SMSPDVIVVDEIGR------------EEDVEALLEALHA--------------GVSIIATAHGRD-VEDLYKRPVFKELI 244 (270)
T ss_pred hCCCCEEEEeCCCc------------HHHHHHHHHHHhC--------------CCEEEEEechhH-HHHHHhChHHHHHH
Confidence 78999999999631 1234555555431 257888887543 22232 2
Q ss_pred cCCccceEEEeC
Q 005643 332 RPGRIDRRLYIG 343 (686)
Q Consensus 332 rpgRFd~~I~v~ 343 (686)
..+-|++.+.+.
T Consensus 245 ~~~~~~r~i~L~ 256 (270)
T TIGR02858 245 ENEAFERYVVLS 256 (270)
T ss_pred hcCceEEEEEEe
Confidence 234567766663
No 302
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.00068 Score=74.36 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=62.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh----C-CCeEEEeCccccchhhh-----------------HHHHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES----G-LPFVFASGAEFTDSEKS-----------------GAARINEMFSIAR 259 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~----g-~~fi~is~s~~~~~~~~-----------------~~~~vr~lF~~Ak 259 (686)
.....++|.||+|+|||+++..+|..+ | ..+..+++..+...... ....+......
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-- 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-- 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--
Confidence 345678999999999999999998753 3 34555555444210000 00112222222
Q ss_pred hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccc
Q 005643 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFV 331 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLl 331 (686)
.....+|+||...... .+..+...+..+...... .+.++|+.+|+..+.++..+.
T Consensus 213 l~~~DlVLIDTaG~~~---------~d~~l~e~La~L~~~~~~--------~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQ---------RDRTVSDQIAMLHGADTP--------VQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred hcCCCEEEEcCCCCCc---------ccHHHHHHHHHHhccCCC--------CeEEEEecCccChHHHHHHHH
Confidence 2345789999885331 122345555555443211 134788888888777765443
No 303
>PRK09354 recA recombinase A; Provisional
Probab=97.23 E-value=0.0017 Score=70.57 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=51.5
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccch-h----------------hhHHHHHHHHHHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDS-E----------------KSGAARINEMFSIAR 259 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~-~----------------~~~~~~vr~lF~~Ak 259 (686)
|.+..+-++++||||||||+||-.++.+ .|...++++...-... . ......+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4566667899999999999999887543 4778888887653221 0 011112222223345
Q ss_pred hcCCeEEEEccchhhhc
Q 005643 260 RNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (686)
...+.+|+||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999999975
No 304
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.23 E-value=0.0013 Score=80.68 Aligned_cols=143 Identities=27% Similarity=0.348 Sum_probs=93.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch---hhh-------HHHH-HHHHHHHHHhcCCeEEEEccc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS---EKS-------GAAR-INEMFSIARRNAPAFVFVDEI 271 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~---~~~-------~~~~-vr~lF~~Ak~~~P~ILfIDEi 271 (686)
..+++||-|.||.|||++..|+|++.|-.++.|+.++-.+- +|. |.-+ ...=|-.|-+.. .-+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehh
Confidence 35789999999999999999999999999999998874432 111 1111 122233333333 45788999
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHhcCCccc---CCcccccccccEEEEEecCCCC------CCccccccCCccceEEEe
Q 005643 272 DAIAGRHARKDPRRRATFEALIAQLDGDKER---TGIDRFSLRQAVIFICATNRPD------ELDLEFVRPGRIDRRLYI 342 (686)
Q Consensus 272 Dal~~~~~~~~~e~~~~l~~LL~~ld~~~~~---~~~~~~~~~~~ViVIaaTN~p~------~LD~aLlrpgRFd~~I~v 342 (686)
.--. ..++..|-.++|-.... .-...|....++.|+||-|.-+ .|+..++. || .+|.+
T Consensus 1621 NLaS----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~~ 1687 (4600)
T COG5271 1621 NLAS----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKM 1687 (4600)
T ss_pred hhhH----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEEe
Confidence 7442 22444444444432111 0011244456789999988743 58888988 99 47888
Q ss_pred CCCCHHHHHHHHHHHhc
Q 005643 343 GLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 343 ~~Pd~~eR~~Il~~~l~ 359 (686)
+..+.+....|......
T Consensus 1688 d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1688 DGLTTDDITHIANKMYP 1704 (4600)
T ss_pred cccccchHHHHHHhhCC
Confidence 88888888888775544
No 305
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0039 Score=74.63 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=104.5
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEEeCcc
Q 005643 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFASGAE 239 (686)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~is~s~ 239 (686)
++-|+|. ..++++.+++.|... ..++-+|.|.||+|||.++.-+|+.. +..++.++...
T Consensus 185 ldPvigr--~deeirRvi~iL~Rr---------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 185 LDPVIGR--HDEEIRRVIEILSRK---------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCCccCC--chHHHHHHHHHHhcc---------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 4566675 124555555555444 23678999999999999999998864 33566777665
Q ss_pred ccch---hhhHHHHHHHHHHHHH-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 240 FTDS---EKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 240 ~~~~---~~~~~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
+... -+....+++.+.+.+. .....||||||++-+.+.... ...... ..+|..+-.. .++-
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--~~~~d~-~nlLkp~L~r------------g~l~ 318 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--YGAIDA-ANLLKPLLAR------------GGLW 318 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc--chHHHH-HHhhHHHHhc------------CCeE
Confidence 4433 3567788999998887 445679999999999754222 112222 3333333221 1278
Q ss_pred EEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHH
Q 005643 316 FICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357 (686)
Q Consensus 316 VIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~ 357 (686)
+|+||..-. .-||++-| ||+ .+.++.|+.+.-..||...
T Consensus 319 ~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l 362 (898)
T KOG1051|consen 319 CIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGL 362 (898)
T ss_pred EEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhh
Confidence 888775322 35899999 996 5788999988766676643
No 306
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.22 E-value=0.00027 Score=80.47 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=43.3
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-CCCeEEEeC
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASG 237 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-g~~fi~is~ 237 (686)
.-|+|+.|++++++. ++++++..- ..+ ....+-++|.||||+|||+||++||+.+ ..|++.+.+
T Consensus 73 ~fF~d~yGlee~ier---iv~~l~~Aa--~gl-~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQ---IVSYFRHAA--QGL-EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHH---HHHHHHHHH--Hhc-CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 468999999865554 455553321 111 1234578899999999999999999865 346666654
No 307
>PHA02624 large T antigen; Provisional
Probab=97.20 E-value=0.00053 Score=78.51 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=71.9
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA 279 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~ 279 (686)
|++..+.++|+||||||||+|+.++++.+|-..+.++++.-...+. ..-.....+++||++-.-.....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~Fw-----------L~pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFE-----------LGCAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHH-----------hhhhhhceEEEeeeccccccccc
Confidence 5566679999999999999999999999966677787555332221 11111124788888753221000
Q ss_pred --CCChhHHHHHHHHHHHhcCC-cccCCccccc---ccccEEEEEecCCCCCCccccccCCccceEEEeC
Q 005643 280 --RKDPRRRATFEALIAQLDGD-KERTGIDRFS---LRQAVIFICATNRPDELDLEFVRPGRIDRRLYIG 343 (686)
Q Consensus 280 --~~~~e~~~~l~~LL~~ld~~-~~~~~~~~~~---~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~ 343 (686)
..+.. -.-+..|-+.|||. .-+-...+.. ...+ -.|.|||. ..|+..+.- ||-.++.|.
T Consensus 496 ~Lp~G~~-~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~P-PlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 496 DLPSGQG-MNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFP-PGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred cCCcccc-cchhhHHHhhcCCCCccccchhccCchhccCC-CeEEeecC-cccchhHHH--HHHHhcccc
Confidence 00000 11234566677775 2111100000 0011 24567775 567777776 888777774
No 308
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.20 E-value=0.0024 Score=68.02 Aligned_cols=136 Identities=21% Similarity=0.312 Sum_probs=80.4
Q ss_pred CceEEEEcCCCCcHHHHHHHH---HHHhCCCeEEEeCccccch----------------------hhhHHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTL---AKESGLPFVFASGAEFTDS----------------------EKSGAARINEMFSIA 258 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAral---A~e~g~~fi~is~s~~~~~----------------------~~~~~~~vr~lF~~A 258 (686)
...|++.||.|+|||.+.... +.+.|-+|+.+...-+... ++.....+..+....
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 467999999999999875544 3467778776654433211 011112233333333
Q ss_pred Hh-----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCC---cccc
Q 005643 259 RR-----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL---DLEF 330 (686)
Q Consensus 259 k~-----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L---D~aL 330 (686)
+. ..+.|.++||||-+++. .+...+..|+..-. +.+.+|+||+.|.+.+.+ ...+
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h------~rQtllYnlfDisq-----------s~r~Piciig~Ttrld~lE~LEKRV 191 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAPH------SRQTLLYNLFDISQ-----------SARAPICIIGVTTRLDILELLEKRV 191 (408)
T ss_pred hcCCCCCCceEEEEeehhhccccc------hhhHHHHHHHHHHh-----------hcCCCeEEEEeeccccHHHHHHHHH
Confidence 32 22345666799998753 12223333333221 123469999999887754 4566
Q ss_pred ccCCccceE-EEeCCC-CHHHHHHHHHHHh
Q 005643 331 VRPGRIDRR-LYIGLP-DAKQRVQIFDVHS 358 (686)
Q Consensus 331 lrpgRFd~~-I~v~~P-d~~eR~~Il~~~l 358 (686)
.+ ||... |++.++ ...+-..+++..+
T Consensus 192 KS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 192 KS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred Hh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 67 99754 666554 5788888887665
No 309
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.19 E-value=0.0049 Score=66.64 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=79.3
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch----------------hh----hHHH---HHHHHHHH-
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS----------------EK----SGAA---RINEMFSI- 257 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~----------------~~----~~~~---~vr~lF~~- 257 (686)
..|..+.|+|-.|||||.+.|.+-+..+.+.+.++|-+.... .+ .... .+-.+|.+
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 468889999999999999999999999999999988663221 00 0011 12334444
Q ss_pred -HHhc--CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCC
Q 005643 258 -ARRN--APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPG 334 (686)
Q Consensus 258 -Ak~~--~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpg 334 (686)
+..+ ....|++|.+|.+-.. + ...++.|+..- ....... -+++...+-.+.. -+.+-|
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD~----~---a~ll~~l~~L~-el~~~~~--------i~iils~~~~e~~---y~~n~g 168 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALRDM----D---AILLQCLFRLY-ELLNEPT--------IVIILSAPSCEKQ---YLINTG 168 (438)
T ss_pred HHhhccCceEEEEEcCHHhhhcc----c---hHHHHHHHHHH-HHhCCCc--------eEEEEeccccHHH---hhcccC
Confidence 2222 2457999999999411 1 12333333221 1111100 0222222222211 111123
Q ss_pred ccc-eEEEeCCCCHHHHHHHHHHHhc
Q 005643 335 RID-RRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 335 RFd-~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
-++ ..++||-|+.++...|+..--.
T Consensus 169 ~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 169 TLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred CCCceEEecCCCCHHHHHHHHhcCCc
Confidence 333 4788999999999999875433
No 310
>PRK07261 topology modulation protein; Provisional
Probab=97.18 E-value=0.00077 Score=66.09 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~ 239 (686)
-|+++|+||+|||++|+.++...+.|++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 3899999999999999999999999988766443
No 311
>PRK13947 shikimate kinase; Provisional
Probab=97.18 E-value=0.00036 Score=67.74 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
+|+|.|+||||||++++.+|+.+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997544
No 312
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.17 E-value=0.0025 Score=65.49 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=32.4
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~ 239 (686)
|.++..-++|.|+||+|||+++..++... |.+++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 66667788999999999999998886543 88888888544
No 313
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.17 E-value=0.0044 Score=63.11 Aligned_cols=98 Identities=21% Similarity=0.226 Sum_probs=59.7
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchhhh--------------------------H---
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS--------------------------G--- 247 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~~~--------------------------~--- 247 (686)
|.+...-+++.|+||+|||+++..++.+ .|.++++++..+-.+.... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 5666778899999999999999988754 3778888886553211000 0
Q ss_pred HHH-HHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005643 248 AAR-INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (686)
Q Consensus 248 ~~~-vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~ 298 (686)
... ...+.....+..++.++||-+..+-.- .+...+....+..++..+..
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-~~~~~~~r~~l~~l~~~lk~ 142 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-FDDDAERRTELFRFYSSLRE 142 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-cCCHHHHHHHHHHHHHHHHh
Confidence 001 111222334456788999999887221 12233445566677777653
No 314
>PRK05973 replicative DNA helicase; Provisional
Probab=97.16 E-value=0.004 Score=64.32 Aligned_cols=40 Identities=38% Similarity=0.364 Sum_probs=32.1
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~ 239 (686)
|.++..-+++.|+||+|||+++-.++.+. |.++++++..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 56666778999999999999988886544 87888887654
No 315
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.14 E-value=0.0027 Score=66.55 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=30.8
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s 238 (686)
|.....-++|.||||+|||+++..+|..+ |.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 44556678999999999999999886653 7788887764
No 316
>PRK03839 putative kinase; Provisional
Probab=97.12 E-value=0.00039 Score=68.32 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
.|+|.|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987643
No 317
>PRK04296 thymidine kinase; Provisional
Probab=97.12 E-value=0.0026 Score=63.45 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=41.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc----c----ccchhhhH-----HHHHHHHHHHHH--hcCCeEEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA----E----FTDSEKSG-----AARINEMFSIAR--RNAPAFVF 267 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s----~----~~~~~~~~-----~~~vr~lF~~Ak--~~~P~ILf 267 (686)
-.+++||||+|||+++..++.++ |..++.+..+ . +.+..+.. ......++..++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887654 6666655431 1 11111110 012334444433 34567999
Q ss_pred Eccchhh
Q 005643 268 VDEIDAI 274 (686)
Q Consensus 268 IDEiDal 274 (686)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999766
No 318
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.11 E-value=0.00037 Score=67.94 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC---eEEEeCccc
Q 005643 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASGAEF 240 (686)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~---fi~is~s~~ 240 (686)
++++++...+. . .....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 7 ~e~~~l~~~l~-~-----~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 7 EEIERLRDLLD-A-----AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp HHHHHHHHTTG-G-----TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred HHHHHHHHHHH-H-----HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 45555555553 1 112456899999999999999999986655332 777777766
No 319
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.10 E-value=0.00045 Score=65.55 Aligned_cols=31 Identities=48% Similarity=0.671 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
+|+|+|+||+|||++|+.+|..+|.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999987544
No 320
>PRK00625 shikimate kinase; Provisional
Probab=97.10 E-value=0.00048 Score=67.79 Aligned_cols=31 Identities=42% Similarity=0.638 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
.|+|.|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 321
>PHA02774 E1; Provisional
Probab=97.09 E-value=0.0035 Score=71.70 Aligned_cols=38 Identities=29% Similarity=0.518 Sum_probs=29.5
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeE-EEeC
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV-FASG 237 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi-~is~ 237 (686)
|.+..++++|+||||||||++|-+|++.++..++ +++.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3333468999999999999999999999865543 3553
No 322
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.09 E-value=0.00039 Score=65.16 Aligned_cols=26 Identities=46% Similarity=0.876 Sum_probs=23.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCe
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPF 232 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~f 232 (686)
|+++||||+|||++|+.++...+..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 78999999999999999999988333
No 323
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.08 E-value=0.0054 Score=64.25 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=31.8
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGA 238 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s 238 (686)
|.+....++++||||||||+++-.+|.+ .|-++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 5677788999999999999999988653 36788888765
No 324
>PRK06762 hypothetical protein; Provisional
Probab=97.03 E-value=0.0015 Score=63.20 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=30.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
|.-++|+|+||+|||++|+.++..++..++.++...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 5678999999999999999999998666666665444
No 325
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00048 Score=65.19 Aligned_cols=32 Identities=41% Similarity=0.771 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
.+||++|-||||||+++..+|...|.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 46999999999999999999999999887653
No 326
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.02 E-value=0.0074 Score=59.18 Aligned_cols=90 Identities=26% Similarity=0.314 Sum_probs=54.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHH-----------------HHHHHHHHHhc-CCeEEEE
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAR-----------------INEMFSIARRN-APAFVFV 268 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~-----------------vr~lF~~Ak~~-~P~ILfI 268 (686)
+|+.|+||+|||++|..++...+.+.+++....-.+.. ...+ ..++.+..... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~e--m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDE--MAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHH--HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEE
Confidence 68999999999999999998878788888755433221 1111 11222222221 4679999
Q ss_pred ccchhhhccCCCC-C----hhHHHHHHHHHHHhcC
Q 005643 269 DEIDAIAGRHARK-D----PRRRATFEALIAQLDG 298 (686)
Q Consensus 269 DEiDal~~~~~~~-~----~e~~~~l~~LL~~ld~ 298 (686)
|-+..+...-... + ......+..|+..+..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~ 114 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN 114 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc
Confidence 9998886543221 1 1123445556666654
No 327
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.02 E-value=0.00056 Score=67.17 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
|++.||||+|||++|+.+|...|.+ .++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHH
Confidence 7899999999999999999999864 455555543
No 328
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.02 E-value=0.00075 Score=70.78 Aligned_cols=98 Identities=20% Similarity=0.330 Sum_probs=58.3
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC---eEEEeC-ccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP---FVFASG-AEF 240 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~---fi~is~-s~~ 240 (686)
....+++++.-.+...+.+.+++.. . .+...++++.||+|+|||++++++..+.... ++.+-- .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~---~-------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRS---A-------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHH---C-------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhh---c-------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3455777876555555555544443 2 1234689999999999999999999876443 333221 111
Q ss_pred c-------chh-hhHHHHHHHHHHHHHhcCCeEEEEccch
Q 005643 241 T-------DSE-KSGAARINEMFSIARRNAPAFVFVDEID 272 (686)
Q Consensus 241 ~-------~~~-~~~~~~vr~lF~~Ak~~~P~ILfIDEiD 272 (686)
. ... ........+++..+-+..|.+|+|.|+-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1 000 0122346677788888899999999996
No 329
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.01 E-value=0.0034 Score=67.66 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=32.4
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~ 239 (686)
|++...-++++||||+|||.++-.+|..+ +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56677778999999999999999998653 34788888765
No 330
>PRK13949 shikimate kinase; Provisional
Probab=97.00 E-value=0.00063 Score=66.61 Aligned_cols=32 Identities=38% Similarity=0.606 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
+.|+|.|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988655
No 331
>PLN02200 adenylate kinase family protein
Probab=96.99 E-value=0.00091 Score=69.03 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=32.9
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
.+.|.-+++.||||+|||++|+.+|..+|.+ .++++++..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 4567789999999999999999999998865 466666654
No 332
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.99 E-value=0.0023 Score=66.64 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGL 230 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (686)
..-++|.||+|+|||++++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 445999999999999999999987654
No 333
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.99 E-value=0.0032 Score=63.25 Aligned_cols=107 Identities=21% Similarity=0.318 Sum_probs=58.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchh--------------------h-hHHHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE--------------------K-SGAARINEMFSIAR 259 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~--------------------~-~~~~~vr~lF~~Ak 259 (686)
|+-++|.||+|+|||+++-.+|..+ +..+-.+++..+.-.. . ......+..++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6789999999999999888887654 5555555544332110 0 01122344455555
Q ss_pred hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCc
Q 005643 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD 327 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD 327 (686)
...-.+||||=...- ..+.+....+..++..+... +.++|+.+|-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~------------~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPD------------EVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSS------------EEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCc------------cceEEEecccChHHHH
Confidence 544568998854211 22233334455555555221 2256666666666555
No 334
>PRK14532 adenylate kinase; Provisional
Probab=96.99 E-value=0.00064 Score=67.25 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=29.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
.++|.||||+|||++|+.+|+..|.++ ++..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 489999999999999999999988665 455555443
No 335
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0011 Score=64.65 Aligned_cols=32 Identities=38% Similarity=0.588 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
+.+.|.|++|+|||++.|++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998554
No 336
>PRK14531 adenylate kinase; Provisional
Probab=96.97 E-value=0.00078 Score=66.63 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
+.++++||||+|||++++.+|...|.+.+ ++.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHH
Confidence 45999999999999999999999987765 444544
No 337
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.97 E-value=0.00076 Score=67.62 Aligned_cols=84 Identities=23% Similarity=0.292 Sum_probs=45.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchh-----hhHHHHHHHHHHHHH---------hcCCeEEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE-----KSGAARINEMFSIAR---------RNAPAFVF 267 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~-----~~~~~~vr~lF~~Ak---------~~~P~ILf 267 (686)
+.+++.||||||||++++.++.. .|..++.+....-.... +.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 46888999999999999998653 36677766544321110 000011222221111 12347999
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcC
Q 005643 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDG 298 (686)
Q Consensus 268 IDEiDal~~~~~~~~~e~~~~l~~LL~~ld~ 298 (686)
|||+..+.. ..+..|+.....
T Consensus 99 VDEasmv~~----------~~~~~ll~~~~~ 119 (196)
T PF13604_consen 99 VDEASMVDS----------RQLARLLRLAKK 119 (196)
T ss_dssp ESSGGG-BH----------HHHHHHHHHS-T
T ss_pred EecccccCH----------HHHHHHHHHHHh
Confidence 999988842 245566665544
No 338
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.96 E-value=0.0043 Score=66.84 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=58.2
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCccc-cch-h-------hh---------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEF-TDS-E-------KS--------------- 246 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~~-~~~-~-------~~--------------- 246 (686)
|++...-+.|+||||+|||.|+..+|-.. +...++++...- ... . +.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 45666778899999999999998876422 456788886652 110 0 00
Q ss_pred -H---HHHHHHHHHHHHhcCCeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcCC
Q 005643 247 -G---AARINEMFSIARRNAPAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDGD 299 (686)
Q Consensus 247 -~---~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~---~~~e~~~~l~~LL~~ld~~ 299 (686)
. ...+..+-.......+.+|+||-|-++...... .-.++.+.+++++..|...
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~l 231 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKI 231 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHH
Confidence 0 011222222333456889999999988643211 1223334466666655544
No 339
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.96 E-value=0.0034 Score=60.86 Aligned_cols=90 Identities=20% Similarity=0.153 Sum_probs=55.9
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCccccch---------h-----hhHHHHHHHHHHHHHhcCCe
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTDS---------E-----KSGAARINEMFSIARRNAPA 264 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s~~~~~---------~-----~~~~~~vr~lF~~Ak~~~P~ 264 (686)
+++...+.|.||+|+|||+|.+.+++.... --+.+++.++... . -.+..+.+-.+..|-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 345567899999999999999999986421 1122332221110 0 12233455566677778899
Q ss_pred EEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005643 265 FVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 265 ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~l 296 (686)
++++||--+-. +......+..++.++
T Consensus 103 illlDEP~~~L------D~~~~~~l~~~l~~~ 128 (163)
T cd03216 103 LLILDEPTAAL------TPAEVERLFKVIRRL 128 (163)
T ss_pred EEEEECCCcCC------CHHHHHHHHHHHHHH
Confidence 99999975432 444555666666665
No 340
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.93 E-value=0.007 Score=61.56 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~ 226 (686)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47799999999999999999973
No 341
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.93 E-value=0.0013 Score=65.99 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=41.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCC----eEEEeC-cccc--------ch--hhhHHHHHHHHHHHHHhcCCeEEEEcc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLP----FVFASG-AEFT--------DS--EKSGAARINEMFSIARRNAPAFVFVDE 270 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~----fi~is~-s~~~--------~~--~~~~~~~vr~lF~~Ak~~~P~ILfIDE 270 (686)
-+++.||+|+|||++++++++....+ ++.+.. .++. .. .+.....+...+..+-...|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 36889999999999999998876422 222211 1111 00 111112244556666677899999999
Q ss_pred c
Q 005643 271 I 271 (686)
Q Consensus 271 i 271 (686)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 342
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.92 E-value=0.00079 Score=63.19 Aligned_cols=30 Identities=40% Similarity=0.800 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
|.+.|+||||||++|+.+|..+|.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 343
>PRK04328 hypothetical protein; Provisional
Probab=96.92 E-value=0.0085 Score=62.38 Aligned_cols=40 Identities=40% Similarity=0.596 Sum_probs=30.9
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~ 239 (686)
|.+....+|++||||||||+|+..++.+ .|-+.++++..+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 5667778999999999999998877543 367777777543
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.92 E-value=0.0037 Score=59.39 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=50.7
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCcc---ccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAE---FTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s~---~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (686)
+....+.|.||+|+|||+|++++++.... --+.+++.. +.... .+..+-+-.+..|-...|.++++||-.+=.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G~~~rv~laral~~~p~illlDEP~~~L- 101 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGGEKMRLALAKLLLENPNLLLLDEPTNHL- 101 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCC-
Confidence 44567899999999999999999986421 111222110 01101 122233444555666788999999976432
Q ss_pred cCCCCChhHHHHHHHHHHHh
Q 005643 277 RHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 277 ~~~~~~~e~~~~l~~LL~~l 296 (686)
+......+..++.++
T Consensus 102 -----D~~~~~~l~~~l~~~ 116 (144)
T cd03221 102 -----DLESIEALEEALKEY 116 (144)
T ss_pred -----CHHHHHHHHHHHHHc
Confidence 333344445555544
No 345
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.90 E-value=0.0053 Score=65.88 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=32.3
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~ 239 (686)
|++...-++++||||+|||+++-.+|..+ +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56667778999999999999999997663 23788888766
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.90 E-value=0.0038 Score=61.63 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=64.6
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCC-------------eEEEe---------Cccc-cch-h--hhHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP-------------FVFAS---------GAEF-TDS-E--KSGAARINEMF 255 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~-------------fi~is---------~s~~-~~~-~--~~~~~~vr~lF 255 (686)
+...-+.|.||.|+|||+|.+++....|.. +.++. ...+ ... . -.+..+.+-.+
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 345568899999999999999997433321 22211 0000 000 0 11223445556
Q ss_pred HHHHhcC--CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccC
Q 005643 256 SIARRNA--PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (686)
Q Consensus 256 ~~Ak~~~--P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp 333 (686)
..|-... |.++++||--+-. +......+.+++..+... +..||.+|+.++.+ +
T Consensus 99 aral~~~~~p~llLlDEPt~~L------D~~~~~~l~~~l~~~~~~-------------g~tvIivSH~~~~~-----~- 153 (176)
T cd03238 99 ASELFSEPPGTLFILDEPSTGL------HQQDINQLLEVIKGLIDL-------------GNTVILIEHNLDVL-----S- 153 (176)
T ss_pred HHHHhhCCCCCEEEEeCCcccC------CHHHHHHHHHHHHHHHhC-------------CCEEEEEeCCHHHH-----H-
Confidence 6666677 8999999975432 334444455555544211 13566677765432 3
Q ss_pred CccceEEEeCC
Q 005643 334 GRIDRRLYIGL 344 (686)
Q Consensus 334 gRFd~~I~v~~ 344 (686)
..|+.+.+..
T Consensus 154 -~~d~i~~l~~ 163 (176)
T cd03238 154 -SADWIIDFGP 163 (176)
T ss_pred -hCCEEEEECC
Confidence 4566666643
No 347
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.90 E-value=0.0008 Score=65.94 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcc
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~ 239 (686)
+-++|.|+||+|||++|++++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 46899999999999999999999988877654433
No 348
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.90 E-value=0.0053 Score=73.03 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=50.4
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHH---HhCCCeEEEeCccccch-----h------------hhHHHHHHHHHHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAK---ESGLPFVFASGAEFTDS-----E------------KSGAARINEMFSIAR 259 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~---e~g~~fi~is~s~~~~~-----~------------~~~~~~vr~lF~~Ak 259 (686)
|.+..+.++++||||||||+|+..++. ..|..+++++...-... . ...+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 456677789999999999999976644 34677888876653221 0 011111222222344
Q ss_pred hcCCeEEEEccchhhhc
Q 005643 260 RNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (686)
...+.+|+||-+.++.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 56789999999999975
No 349
>PRK06217 hypothetical protein; Validated
Probab=96.89 E-value=0.00087 Score=66.22 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
.|+|.|+||+|||++|++++..+|.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 350
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.01 Score=65.87 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=27.7
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCcc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~ 239 (686)
.+.-++|.||+|+|||+++..+|... |..+..+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 35668899999999999999998754 44455555444
No 351
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.88 E-value=0.0023 Score=70.30 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 005643 207 VLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g 229 (686)
.+|+||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 78899999999999999988663
No 352
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.86 E-value=0.048 Score=58.66 Aligned_cols=127 Identities=13% Similarity=0.243 Sum_probs=68.8
Q ss_pred HHHHHHHHHh--c-CCeEEEEccchhhhccCCCC-------ChhHHHHHHHHHHHhcCCcccCCcccccccccEEE--EE
Q 005643 251 INEMFSIARR--N-APAFVFVDEIDAIAGRHARK-------DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF--IC 318 (686)
Q Consensus 251 vr~lF~~Ak~--~-~P~ILfIDEiDal~~~~~~~-------~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV--Ia 318 (686)
+..++++.+. . .|.++-||++.++.....-. +...-.....++..+.+...-. .+.+| ++
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~--------nG~~v~~l~ 213 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFK--------NGAVVTALA 213 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccC--------CCeEEEEEe
Confidence 3444544443 2 47889999999998653211 2233344555555544332211 22344 55
Q ss_pred ecCC---CC--CCccccccCCc------cc-------------eEEEeCCCCHHHHHHHHHHHhcCCCcccc----ccHH
Q 005643 319 ATNR---PD--ELDLEFVRPGR------ID-------------RRLYIGLPDAKQRVQIFDVHSAGKQLAED----VNFE 370 (686)
Q Consensus 319 aTN~---p~--~LD~aLlrpgR------Fd-------------~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d----vdl~ 370 (686)
+|.. +. .++.++....- |. ..|.++..+.+|-..+++.+....-+... .-.+
T Consensus 214 ~t~~~~~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e 293 (309)
T PF10236_consen 214 ATSVSNAPKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLE 293 (309)
T ss_pred ccccccccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHH
Confidence 5533 22 45555543111 11 16889999999999999988765544421 1123
Q ss_pred HHHHhccCCCHHHHHH
Q 005643 371 ELVFRTVGFSGADIRN 386 (686)
Q Consensus 371 ~La~~t~G~sgadL~~ 386 (686)
.+... .|.+++++..
T Consensus 294 ~~~~~-s~GNp~el~k 308 (309)
T PF10236_consen 294 KLFLS-SNGNPRELEK 308 (309)
T ss_pred HHHHh-cCCCHHHhcc
Confidence 33333 3447777653
No 353
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.86 E-value=0.00088 Score=66.20 Aligned_cols=33 Identities=48% Similarity=0.822 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
|+|.||||+|||++|+.+|...|.+++ +..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHH
Confidence 799999999999999999999887665 444443
No 354
>PRK06547 hypothetical protein; Provisional
Probab=96.86 E-value=0.0017 Score=63.90 Aligned_cols=35 Identities=34% Similarity=0.503 Sum_probs=30.2
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
..+.-|++.|++|+|||++|+.+++..+++++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 35678899999999999999999999998877543
No 355
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.86 E-value=0.018 Score=70.43 Aligned_cols=151 Identities=18% Similarity=0.279 Sum_probs=82.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch---h-h---hH------------------------HHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS---E-K---SG------------------------AARIN 252 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~---~-~---~~------------------------~~~vr 252 (686)
.+-++++||+|.|||+++...+...+ ++.-++...-... + . .. ...+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 45689999999999999999887766 6665554321100 0 0 00 01122
Q ss_pred HHHHHHHh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCcc-cc
Q 005643 253 EMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDL-EF 330 (686)
Q Consensus 253 ~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~-aL 330 (686)
.++..... ..|.+|+||+++.+. ++.....+..|+..+.. ++.+|.++.....++- .+
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~------~~~~~~~l~~l~~~~~~--------------~~~lv~~sR~~~~~~~~~l 170 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT------NPEIHEAMRFFLRHQPE--------------NLTLVVLSRNLPPLGIANL 170 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC------ChHHHHHHHHHHHhCCC--------------CeEEEEEeCCCCCCchHhH
Confidence 33333322 678999999999873 22333345555544321 2344345543111211 11
Q ss_pred ccCCccceEEEeC----CCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCC
Q 005643 331 VRPGRIDRRLYIG----LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFS 380 (686)
Q Consensus 331 lrpgRFd~~I~v~----~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~s 380 (686)
... +..+.+. ..+.++-.+++...+. ..+. ..+...+...|.|..
T Consensus 171 ~~~---~~~~~l~~~~l~f~~~e~~~ll~~~~~-~~~~-~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 171 RVR---DQLLEIGSQQLAFDHQEAQQFFDQRLS-SPIE-AAESSRLCDDVEGWA 219 (903)
T ss_pred Hhc---CcceecCHHhCCCCHHHHHHHHHhccC-CCCC-HHHHHHHHHHhCChH
Confidence 111 2234454 5588888888875443 2232 334677888888753
No 356
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.85 E-value=0.0011 Score=68.07 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=28.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.|..++|.||||+|||++|+.+|+.+|++++++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 345599999999999999999999999877654
No 357
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.85 E-value=0.0019 Score=64.00 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=44.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCc-cc-------cch-------hhhHHHHHHHHHHHHHhcCCeE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGA-EF-------TDS-------EKSGAARINEMFSIARRNAPAF 265 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s-~~-------~~~-------~~~~~~~vr~lF~~Ak~~~P~I 265 (686)
....++|.||+|+|||++++++++.... ..+.+... ++ ... .........+++..+....|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 3567999999999999999999986531 22222111 00 000 0011123566677777788999
Q ss_pred EEEccch
Q 005643 266 VFVDEID 272 (686)
Q Consensus 266 LfIDEiD 272 (686)
++++|+-
T Consensus 104 i~igEir 110 (186)
T cd01130 104 IIVGEVR 110 (186)
T ss_pred EEEEccC
Confidence 9999984
No 358
>PRK06696 uridine kinase; Validated
Probab=96.85 E-value=0.002 Score=65.83 Aligned_cols=41 Identities=37% Similarity=0.461 Sum_probs=34.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccch
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS 243 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~ 243 (686)
.|.-|.+.|+||+|||++|+.|+..+ |.+++.++..+|...
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 46778999999999999999999988 778888887777543
No 359
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.84 E-value=0.015 Score=64.95 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=23.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCe
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~f 232 (686)
..-+|||.|.|||.|+-|.|.+-.-+-+.+
T Consensus 363 GDINVLLLGDPgtAKSQlLKFvEkvsPIaV 392 (729)
T KOG0481|consen 363 GDINVLLLGDPGTAKSQLLKFVEKVSPIAV 392 (729)
T ss_pred cceeEEEecCCchhHHHHHHHHHhcCceEE
Confidence 346799999999999999999976544433
No 360
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.84 E-value=0.00094 Score=63.41 Aligned_cols=33 Identities=30% Similarity=0.734 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
++|+|+||+|||++|+.++...+.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999877654 444443
No 361
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.83 E-value=0.002 Score=69.54 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=45.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEEe-Ccccc-------chhhhHHHHHHHHHHHHHhcCCeEEEEcc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFAS-GAEFT-------DSEKSGAARINEMFSIARRNAPAFVFVDE 270 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g-----~~fi~is-~s~~~-------~~~~~~~~~vr~lF~~Ak~~~P~ILfIDE 270 (686)
.+++|++|++|+|||+++++++.... ..++.+- ..++. .......-...++++.+-+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 46899999999999999999988752 2233222 11111 00011112366777888889999999999
Q ss_pred ch
Q 005643 271 ID 272 (686)
Q Consensus 271 iD 272 (686)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 84
No 362
>PRK13948 shikimate kinase; Provisional
Probab=96.83 E-value=0.0013 Score=65.30 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=31.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
+++..|+|.|.+|+|||++++.+|+.+|.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 35789999999999999999999999999998544
No 363
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.82 E-value=0.0096 Score=58.42 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=53.5
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCcc--------------------ccch--------hhhHHHH
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAE--------------------FTDS--------EKSGAAR 250 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s~--------------------~~~~--------~~~~~~~ 250 (686)
++....+.|.||+|+|||+|++.+++.... --+.+++.. +... .-.+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 344567899999999999999999886421 111122111 1000 0111234
Q ss_pred HHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005643 251 INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 251 vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~l 296 (686)
.+-.+..|-...|.++++||--+-. +......+.+++..+
T Consensus 105 qrv~laral~~~p~~lllDEP~~~L------D~~~~~~l~~~l~~~ 144 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGL------DPITERQLLSLIFEV 144 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccC------CHHHHHHHHHHHHHH
Confidence 4555666667889999999976432 334445556666655
No 364
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.81 E-value=0.002 Score=68.93 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEEeCc-cc-------cch-hhhHHHHHHHHHHHHHhcCCeEEEEc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA-EF-------TDS-EKSGAARINEMFSIARRNAPAFVFVD 269 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g-----~~fi~is~s-~~-------~~~-~~~~~~~vr~lF~~Ak~~~P~ILfID 269 (686)
.++++++||+|+|||++++++++... ..++.+--. ++ ... ...+.....+++..+-+..|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999988752 223322211 11 110 01111146778888888999999999
Q ss_pred cch
Q 005643 270 EID 272 (686)
Q Consensus 270 EiD 272 (686)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 984
No 365
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.80 E-value=0.0034 Score=56.89 Aligned_cols=24 Identities=50% Similarity=0.595 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
++++++||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 468999999999999888887655
No 366
>PRK14530 adenylate kinase; Provisional
Probab=96.78 E-value=0.0013 Score=66.84 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.|+|.||||+|||++++.+|+.+|.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999998776643
No 367
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.013 Score=57.27 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=60.2
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCccc---------------------cc-hh----hhHHHHHH
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEF---------------------TD-SE----KSGAARIN 252 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s~~---------------------~~-~~----~~~~~~vr 252 (686)
+++..-+.|.||+|+|||+|.+.+++.... --+.+++..+ .. .. -.+-.+-+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 344567899999999999999999986421 0111221111 00 00 11122334
Q ss_pred HHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCC
Q 005643 253 EMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL 326 (686)
Q Consensus 253 ~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L 326 (686)
-.+..|-...|.++++||--+-. +......+..++..+.. . ..+|.+|+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~gL------D~~~~~~l~~~l~~~~~--~------------~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATSAL------DPETEALILEALRALAK--G------------KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCC------CHHHHHHHHHHHHHhcC--C------------CEEEEEecCHHHH
Confidence 44556666789999999965332 33444455566655532 1 2566667766554
No 368
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.77 E-value=0.0049 Score=59.00 Aligned_cols=34 Identities=32% Similarity=0.602 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
++++|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999987 667777765443
No 369
>PRK13764 ATPase; Provisional
Probab=96.76 E-value=0.0021 Score=74.49 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=41.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCC---CeEEEe-Ccccc-----chhhhHHHHHHHHHHHHHhcCCeEEEEccch
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGL---PFVFAS-GAEFT-----DSEKSGAARINEMFSIARRNAPAFVFVDEID 272 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~---~fi~is-~s~~~-----~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiD 272 (686)
..+++|++||||+||||++++++..+.. .+..+- ..++. ................+-...|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHHhhCCCEEEECCCC
Confidence 3578999999999999999999987642 222221 11111 0000000011222233345679999999985
No 370
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0064 Score=58.30 Aligned_cols=88 Identities=25% Similarity=0.319 Sum_probs=52.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCC--eEEEeCccccc--------hh-----hhHHHHHHHHHHHHHhcCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP--FVFASGAEFTD--------SE-----KSGAARINEMFSIARRNAPAFVF 267 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~--fi~is~s~~~~--------~~-----~~~~~~vr~lF~~Ak~~~P~ILf 267 (686)
+...+.|.||+|+|||+|++++++..... -+.+++..... .. -.+-.+.+-.+..+-...|.+++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34578999999999999999999865321 22333322211 00 11122334445555566789999
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHh
Q 005643 268 VDEIDAIAGRHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 268 IDEiDal~~~~~~~~~e~~~~l~~LL~~l 296 (686)
+||...=. +......+..++..+
T Consensus 104 lDEp~~~l------D~~~~~~l~~~l~~~ 126 (157)
T cd00267 104 LDEPTSGL------DPASRERLLELLREL 126 (157)
T ss_pred EeCCCcCC------CHHHHHHHHHHHHHH
Confidence 99986432 333444555555554
No 371
>PTZ00202 tuzin; Provisional
Probab=96.75 E-value=0.14 Score=57.20 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=45.9
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcc
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~ 239 (686)
..-.+.+|-++....|..++.- . ....|+-+.|.||+|+|||++++.++..++.+.++++...
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~---~------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRR---L------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhc---c------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 3456778888655555555442 2 2235667889999999999999999999998877777653
No 372
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.75 E-value=0.011 Score=66.29 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=31.6
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
..|..++++|++|+|||+++..+|..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 458899999999999999999998765 566776776554
No 373
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.75 E-value=0.029 Score=56.40 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCe
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~f 232 (686)
+.-+++.|+||+|||++|+.+|.++|.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45789999999999999999999988765
No 374
>PTZ00035 Rad51 protein; Provisional
Probab=96.74 E-value=0.0092 Score=64.97 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=58.7
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCccccch--hhhH---------------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS--EKSG--------------------- 247 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~~~~~--~~~~--------------------- 247 (686)
|++...-+.|+||||+|||+|+..++... +..+++++...-... ....
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 56667778899999999999999997543 335667776542110 0000
Q ss_pred -----HHHHHHHHHHHHhcCCeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcCC
Q 005643 248 -----AARINEMFSIARRNAPAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDGD 299 (686)
Q Consensus 248 -----~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~---~~~e~~~~l~~LL~~ld~~ 299 (686)
...+..+........+.+|+||-|-++...... ...++.+.+.+++..|...
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~l 253 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKL 253 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHH
Confidence 011222222223456789999999997643211 1223445566666666543
No 375
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0013 Score=63.24 Aligned_cols=28 Identities=50% Similarity=0.755 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
|-+.||||||||++|+-+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999985
No 376
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.72 E-value=0.0068 Score=69.25 Aligned_cols=44 Identities=36% Similarity=0.477 Sum_probs=35.1
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH----hCCCeEEEeCccccch
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAEFTDS 243 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e----~g~~fi~is~s~~~~~ 243 (686)
|.+..+.+|+.||||||||+||..++.+ .|-+.++++..+-.+.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~ 64 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQD 64 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHH
Confidence 5677888999999999999999988433 3789999997654433
No 377
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.72 E-value=0.0011 Score=63.82 Aligned_cols=32 Identities=34% Similarity=0.656 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
++|.||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986664 44444
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=96.72 E-value=0.016 Score=62.96 Aligned_cols=37 Identities=32% Similarity=0.350 Sum_probs=28.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~ 239 (686)
.|.-++|.||||+|||+++..+|..+ |..+..+++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 47789999999999999888887654 55665565543
No 379
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.72 E-value=0.0021 Score=69.28 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=46.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEe-Ccccc-------chhhhHHHHHHHHHHHHHhcCCeEEEEc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFAS-GAEFT-------DSEKSGAARINEMFSIARRNAPAFVFVD 269 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is-~s~~~-------~~~~~~~~~vr~lF~~Ak~~~P~ILfID 269 (686)
..+++++.|++|+|||+++++++.+. ...++.+. ..++. .......-...++++.+-+..|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34689999999999999999999863 12222211 11111 0000111236778888888999999999
Q ss_pred cch
Q 005643 270 EID 272 (686)
Q Consensus 270 EiD 272 (686)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 984
No 380
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.71 E-value=0.0099 Score=64.75 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=58.4
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCcc-ccch-h-------hh---------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAE-FTDS-E-------KS--------------- 246 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~-~~~~-~-------~~--------------- 246 (686)
|++...-..|+||||||||.|+..+|-.. +..+++++... |... . +.
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45666678899999999999999886432 24677887654 1110 0 00
Q ss_pred -H---HHHHHHHHHHHHhcCCeEEEEccchhhhccCCC---CChhHHHHHHHHHHHhcCC
Q 005643 247 -G---AARINEMFSIARRNAPAFVFVDEIDAIAGRHAR---KDPRRRATFEALIAQLDGD 299 (686)
Q Consensus 247 -~---~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~---~~~e~~~~l~~LL~~ld~~ 299 (686)
. ...+..+-.......+.+|+||-|-++...... .-.++.+.+++++..|...
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~l 261 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKI 261 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHH
Confidence 0 011222222333456889999999988643211 1224445566666665443
No 381
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.71 E-value=0.013 Score=67.02 Aligned_cols=77 Identities=21% Similarity=0.188 Sum_probs=55.3
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhh-----------------------------H
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS-----------------------------G 247 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~-----------------------------~ 247 (686)
|......+|+.||||||||+|+-.++.+. |-+.++++..+-.+.... .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56667779999999999999999887654 678888887664321100 0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 005643 248 AARINEMFSIARRNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 248 ~~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (686)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22345556666777889999999998853
No 382
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=96.71 E-value=0.0013 Score=58.59 Aligned_cols=66 Identities=24% Similarity=0.412 Sum_probs=36.0
Q ss_pred CCccchHHHHHHhccCCccEEEEEcCeeE----------EEEEEecCc--eeEEEEeCCCC----hhHHHHHHhCCCeEE
Q 005643 35 RPKLPYTYFLEKLDSSEVAAVVFTEDLKR----------LYVTMKEGF--PLEYVVDIPLD----PYLFETIASSGAEVD 98 (686)
Q Consensus 35 ~~~~~y~~f~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~----~~~~~~l~~~~~~~~ 98 (686)
..+++||+|+++|++|+|++|++.++... +....+++. ...+....+.+ +.|.+.+.++|+++.
T Consensus 27 ~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~v~~~ 106 (110)
T PF06480_consen 27 TKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKYTTFYTPSIPSVDSFDEFLIEALVEKGVKYE 106 (110)
T ss_dssp SEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-STT--EEEE-S-HHHHHHHHHHHHHHTT--TT
T ss_pred CcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCccEEEEEcCCCCCHHHHHHHHHHHHHCCCccc
Confidence 45799999999999999999999987644 112222222 12234444443 346666777777765
Q ss_pred Ee
Q 005643 99 LL 100 (686)
Q Consensus 99 ~~ 100 (686)
..
T Consensus 107 ~~ 108 (110)
T PF06480_consen 107 SV 108 (110)
T ss_dssp T-
T ss_pred ee
Confidence 43
No 383
>PRK14528 adenylate kinase; Provisional
Probab=96.70 E-value=0.0016 Score=64.77 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
+.+++.||||+|||++|+.+|...|.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999887643
No 384
>PRK13695 putative NTPase; Provisional
Probab=96.70 E-value=0.02 Score=55.91 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.++|.|+||+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987764
No 385
>PRK13946 shikimate kinase; Provisional
Probab=96.70 E-value=0.0015 Score=64.76 Aligned_cols=34 Identities=44% Similarity=0.558 Sum_probs=30.6
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
.++.|+|.|+||+|||++++.+|+.+|.+|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3568999999999999999999999999988654
No 386
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.70 E-value=0.0017 Score=63.10 Aligned_cols=31 Identities=35% Similarity=0.509 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
..++|.|+||+|||++++.+|..+|.+|+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 4589999999999999999999999998754
No 387
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.69 E-value=0.0034 Score=68.48 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC----CeEEEe-Ccccc--------ch--hhhHHHHHHHHHHHHHhcCCeEEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGL----PFVFAS-GAEFT--------DS--EKSGAARINEMFSIARRNAPAFVFV 268 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~----~fi~is-~s~~~--------~~--~~~~~~~vr~lF~~Ak~~~P~ILfI 268 (686)
...+++.||+|+|||++.+++.+.... .++.+. ..++. .. .+.........++.+-...|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 356889999999999999999886642 233221 11111 00 1111122455666677788999999
Q ss_pred ccch
Q 005643 269 DEID 272 (686)
Q Consensus 269 DEiD 272 (686)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9984
No 388
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.015 Score=64.37 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=62.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEEeCccccch--h---------------hhHHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFASGAEFTDS--E---------------KSGAARINEMFSI 257 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~-------g~~fi~is~s~~~~~--~---------------~~~~~~vr~lF~~ 257 (686)
..|+.++|+||+|+|||+++..+|..+ |..+..+++..+... . ......+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998754 344555554443211 0 0011223333333
Q ss_pred HHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccc
Q 005643 258 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFV 331 (686)
Q Consensus 258 Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLl 331 (686)
. ....+|+||...... .+.. .+..+...++..... .+.++|+.+|.....+...+.
T Consensus 252 ~--~~~DlVLIDTaGr~~-----~~~~---~l~el~~~l~~~~~~--------~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSP-----KDFM---KLAEMKELLNACGRD--------AEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred h--CCCCEEEEcCCCCCc-----cCHH---HHHHHHHHHHhcCCC--------CeEEEEEcCCCCHHHHHHHHH
Confidence 3 345799999986552 1211 234444444332211 123688888877766664443
No 389
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.68 E-value=0.0017 Score=63.64 Aligned_cols=33 Identities=33% Similarity=0.605 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
++.|+|.||+|+|||++++.+|+.++.+++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 457999999999999999999999999987665
No 390
>PF13245 AAA_19: Part of AAA domain
Probab=96.66 E-value=0.0028 Score=53.74 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHH-HHHHHHHHHh------CCCeEEEe
Q 005643 206 GVLLSGPPGTGKT-LFARTLAKES------GLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT-~LAralA~e~------g~~fi~is 236 (686)
-+++.|||||||| ++++.++... +..++.++
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 4556999999999 5566665544 44555554
No 391
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.64 E-value=0.014 Score=56.85 Aligned_cols=89 Identities=26% Similarity=0.357 Sum_probs=52.5
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCC-----------CeEEEeCcc-ccc------------hhhhHHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL-----------PFVFASGAE-FTD------------SEKSGAARINEMFSI 257 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~-----------~fi~is~s~-~~~------------~~~~~~~~vr~lF~~ 257 (686)
.+..-+.|.||.|+|||+|++.+++.... .+.++.-.. +.. ..-.+-.+-+-.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 34566899999999999999999986421 111111110 110 001222344555666
Q ss_pred HHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005643 258 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 258 Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~l 296 (686)
|-...|.++++||-.+-. +......+.+++..+
T Consensus 105 al~~~p~~lllDEPt~~L------D~~~~~~l~~~l~~~ 137 (166)
T cd03223 105 LLLHKPKFVFLDEATSAL------DEESEDRLYQLLKEL 137 (166)
T ss_pred HHHcCCCEEEEECCcccc------CHHHHHHHHHHHHHh
Confidence 667789999999976433 334444555555554
No 392
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.64 E-value=0.0057 Score=61.28 Aligned_cols=42 Identities=31% Similarity=0.487 Sum_probs=32.9
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh-CCCeEEEeCccccch
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEFTDS 243 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~-g~~fi~is~s~~~~~ 243 (686)
..|.-+++.|+||+|||+++..+..+. +..++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 568899999999999999999999888 778888998886543
No 393
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.63 E-value=0.025 Score=61.03 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=28.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s 238 (686)
..|.-++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 456788999999999999999998865 4455555543
No 394
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0019 Score=63.92 Aligned_cols=34 Identities=35% Similarity=0.661 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.|+|.||||+||||+|+.||+. .++..+|..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999999 555566644443
No 395
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.60 E-value=0.0023 Score=68.84 Aligned_cols=35 Identities=37% Similarity=0.527 Sum_probs=31.3
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.+++..|+|.|+||+|||++++.+|..+|.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 35677899999999999999999999999999843
No 396
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.59 E-value=0.017 Score=56.38 Aligned_cols=88 Identities=25% Similarity=0.259 Sum_probs=52.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCccc---------------------cc-hh----hhHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEF---------------------TD-SE----KSGAARINEM 254 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s~~---------------------~~-~~----~~~~~~vr~l 254 (686)
...-+.|.||+|+|||+|.+.+++.... --+.+++.++ .. .. -.+-.+-+-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 3456899999999999999999986421 0111111110 00 00 1223344556
Q ss_pred HHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005643 255 FSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 255 F~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~l 296 (686)
+..|-...|.++++||--+-. +......+..++..+
T Consensus 107 la~al~~~p~~lllDEPt~~L------D~~~~~~l~~~l~~~ 142 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHL------DVEGERALNQAIAAL 142 (173)
T ss_pred HHHHHhcCCCEEEEECCcccc------CHHHHHHHHHHHHHH
Confidence 666777889999999975432 334445555666555
No 397
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.053 Score=55.90 Aligned_cols=134 Identities=5% Similarity=0.046 Sum_probs=92.6
Q ss_pred ccCceEEEEcCCC-CcHHHHHHHHHHHhCC---------CeEEEeCccccc--hhhhHHHHHHHHHHHHHh----cCCeE
Q 005643 202 QFVRGVLLSGPPG-TGKTLFARTLAKESGL---------PFVFASGAEFTD--SEKSGAARINEMFSIARR----NAPAF 265 (686)
Q Consensus 202 ~~p~gvLL~GPPG-TGKT~LAralA~e~g~---------~fi~is~s~~~~--~~~~~~~~vr~lF~~Ak~----~~P~I 265 (686)
+.....|+.|..+ +||..++..++..... .+..+....-.. ...-+...+|++-+.+.. ....|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 4556799999998 9999998888765522 133332211000 011234556666555432 34579
Q ss_pred EEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCC
Q 005643 266 VFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLP 345 (686)
Q Consensus 266 LfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~P 345 (686)
++|+++|.+. ....|.||..++.... ++++|..|+.++.+.|.+++ |+ ..+.++.|
T Consensus 93 iII~~ae~mt----------~~AANALLKtLEEPP~-----------~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p 148 (263)
T PRK06581 93 AIIYSAELMN----------LNAANSCLKILEDAPK-----------NSYIFLITSRAASIISTIRS--RC-FKINVRSS 148 (263)
T ss_pred EEEechHHhC----------HHHHHHHHHhhcCCCC-----------CeEEEEEeCChhhCchhHhh--ce-EEEeCCCC
Confidence 9999999994 3577999999988543 36788888889999999998 88 68999999
Q ss_pred CHHHHHHHHHHHhc
Q 005643 346 DAKQRVQIFDVHSA 359 (686)
Q Consensus 346 d~~eR~~Il~~~l~ 359 (686)
+...-.+.+...+.
T Consensus 149 ~~~~~~e~~~~~~~ 162 (263)
T PRK06581 149 ILHAYNELYSQFIQ 162 (263)
T ss_pred CHHHHHHHHHHhcc
Confidence 88777777665544
No 398
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.59 E-value=0.019 Score=65.93 Aligned_cols=40 Identities=43% Similarity=0.497 Sum_probs=31.7
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH----hCCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e----~g~~fi~is~s~ 239 (686)
|.+...-+||+|+||||||+|+..++.+ .|.++++++..+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 4566778999999999999999987543 267888887665
No 399
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.58 E-value=0.0068 Score=50.15 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCCeEEEeC
Q 005643 207 VLLSGPPGTGKTLFARTLAKES-GLPFVFASG 237 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~-g~~fi~is~ 237 (686)
+.+.|+||+|||+++++++..+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999985 345555544
No 400
>PRK14527 adenylate kinase; Provisional
Probab=96.58 E-value=0.002 Score=64.10 Aligned_cols=32 Identities=41% Similarity=0.537 Sum_probs=27.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
.|.-++++||||+|||++|+.+|.+.|.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 46679999999999999999999999876554
No 401
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.57 E-value=0.0045 Score=63.18 Aligned_cols=71 Identities=30% Similarity=0.418 Sum_probs=43.9
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEI 271 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEi 271 (686)
|.+....+++.||||+|||+|+..++.+ .|.+.++++...-.+......+.+...|+.... .+.+.++|++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~-~~~l~i~d~~ 89 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIE-EGKLVIIDAL 89 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhh-cCCEEEEEcc
Confidence 5667788999999999999999987643 367888888755433222112222222333222 2456777754
No 402
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.57 E-value=0.0031 Score=68.43 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=47.1
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEe-Ccccc-----------ch-h--hhHHHHHHHHHHHHHhcCCe
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFAS-GAEFT-----------DS-E--KSGAARINEMFSIARRNAPA 264 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is-~s~~~-----------~~-~--~~~~~~vr~lF~~Ak~~~P~ 264 (686)
+..++++++|++|+|||++++++.....- .++.+- ..++. .. . +...-...++.+.+.+..|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 34578999999999999999999887642 222221 00110 00 0 11112356788888899999
Q ss_pred EEEEccch
Q 005643 265 FVFVDEID 272 (686)
Q Consensus 265 ILfIDEiD 272 (686)
.|++.|+-
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999985
No 403
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.57 E-value=0.0019 Score=65.26 Aligned_cols=28 Identities=43% Similarity=0.824 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
|++.||||+|||++|+.+|...|++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999998877654
No 404
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.56 E-value=0.0022 Score=62.99 Aligned_cols=28 Identities=21% Similarity=0.509 Sum_probs=24.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
-+++.||||+|||++++.++..+|.+.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5788999999999999999999886654
No 405
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.56 E-value=0.0053 Score=62.31 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--------CCCeEEEeCcc-ccch-hh----hHH---------HHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES--------GLPFVFASGAE-FTDS-EK----SGA---------ARINEMFSIARR 260 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~--------g~~fi~is~s~-~~~~-~~----~~~---------~~vr~lF~~Ak~ 260 (686)
..+.|+.||||+|||++.|-+|.-+ ...+..++-+. +... .+ .-. -+-..+....+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 4568999999999999999998754 23344555332 2211 00 001 112345566778
Q ss_pred cCCeEEEEccchhh
Q 005643 261 NAPAFVFVDEIDAI 274 (686)
Q Consensus 261 ~~P~ILfIDEiDal 274 (686)
++|-|+++|||..-
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 99999999999543
No 406
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.56 E-value=0.011 Score=62.16 Aligned_cols=176 Identities=11% Similarity=0.108 Sum_probs=95.9
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHH
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~v 251 (686)
+++..+++.+-+..+...|..| ..+.||.|.+|+||++++|..|.-++..++.+..+.-- ....-...+
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y-~~~~f~~dL 77 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY-SIKDFKEDL 77 (268)
T ss_dssp -----HHHHHHHHHHHHHHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT-HHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc-CHHHHHHHH
Confidence 5566677777788888888877 35799999999999999999999889998887754311 112234557
Q ss_pred HHHHHHHH-hcCCeEEEEccchhh-----------hccCC----CCChhHHHHHHHHHHHhcCCcccCC----cccc--c
Q 005643 252 NEMFSIAR-RNAPAFVFVDEIDAI-----------AGRHA----RKDPRRRATFEALIAQLDGDKERTG----IDRF--S 309 (686)
Q Consensus 252 r~lF~~Ak-~~~P~ILfIDEiDal-----------~~~~~----~~~~e~~~~l~~LL~~ld~~~~~~~----~~~~--~ 309 (686)
+.++..|. ++.|++++|+|-+-. ..... -..+|.+..++.+-........... .+.| .
T Consensus 78 k~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~r 157 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIER 157 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHH
Confidence 77777665 456888888775432 11111 1234555555555544432211100 0011 1
Q ss_pred ccccEEEEEecCC-CCCC------ccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC
Q 005643 310 LRQAVIFICATNR-PDEL------DLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK 361 (686)
Q Consensus 310 ~~~~ViVIaaTN~-p~~L------D~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~ 361 (686)
.+.+.-||.+-+. .+.+ -|+|.. +. ....+...+.+....+-..++...
T Consensus 158 vr~nLHivl~~sp~~~~~r~~~~~fPaL~~--~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 158 VRKNLHIVLCMSPVGPNFRDRCRSFPALVN--CC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp HCCCEEEEEEESTTTTCCCHHHHHHCCHHH--HS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred HHhheeEEEEECCCCchHHHHHHhCcchhc--cc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 1233333333322 2222 355554 33 356666777788888877776543
No 407
>PRK02496 adk adenylate kinase; Provisional
Probab=96.56 E-value=0.0019 Score=63.61 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
-+++.||||+|||++|+.+|..+|.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776543
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.55 E-value=0.011 Score=59.36 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~ 226 (686)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5699999999999999999983
No 409
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.55 E-value=0.008 Score=66.28 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
.-++|.||||+|||++++.+++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4499999999999999999998753
No 410
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.019 Score=59.21 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
.--|-|.||+|||||||.+.+|+-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999983
No 411
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.54 E-value=0.0055 Score=63.57 Aligned_cols=34 Identities=29% Similarity=0.608 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
|+|+|+||+|||++|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999876 567777765444
No 412
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.53 E-value=0.011 Score=64.44 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=59.2
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCccc-cch-hhh----------------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEF-TDS-EKS---------------------- 246 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~~-~~~-~~~---------------------- 246 (686)
|+....-++++|+||+|||.|+..+|... +.++++++...- ... ...
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 45666678899999999999999887432 236788887662 100 000
Q ss_pred -HH---HHHHHHHHHHHhcCCeEEEEccchhhhccCCCC---ChhHHHHHHHHHHHhcCCc
Q 005643 247 -GA---ARINEMFSIARRNAPAFVFVDEIDAIAGRHARK---DPRRRATFEALIAQLDGDK 300 (686)
Q Consensus 247 -~~---~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~---~~e~~~~l~~LL~~ld~~~ 300 (686)
.. ..+..+........+.+|+||-|-++......+ ...+.+.+.+++..|....
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA 259 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLA 259 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 00 112222222345568899999999986432111 1233445667776665543
No 413
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.52 E-value=0.012 Score=58.22 Aligned_cols=88 Identities=24% Similarity=0.155 Sum_probs=51.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCccc---cch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEF---TDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s~~---~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (686)
...-+.|.||.|+|||+|++.+++.... --+.+++..+ ... .-.+..+-+-.+..+-...|.++++||--+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L- 102 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL- 102 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC-
Confidence 4456889999999999999999985421 1122222111 111 12233344555566666789999999975432
Q ss_pred cCCCCChhHHHHHHHHHHHh
Q 005643 277 RHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 277 ~~~~~~~e~~~~l~~LL~~l 296 (686)
+......+..++.++
T Consensus 103 -----D~~~~~~l~~~l~~~ 117 (177)
T cd03222 103 -----DIEQRLNAARAIRRL 117 (177)
T ss_pred -----CHHHHHHHHHHHHHH
Confidence 333344444455444
No 414
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.50 E-value=0.012 Score=63.46 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=58.0
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh------C---CCeEEEeCccccch--h-------hhH--------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES------G---LPFVFASGAEFTDS--E-------KSG-------------- 247 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~------g---~~fi~is~s~~~~~--~-------~~~-------------- 247 (686)
|++...-+.++||||+|||+|+..+|..+ | ...++++...-... . +..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 56667778999999999999999987532 1 35678877662111 0 000
Q ss_pred -----HHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC--Ch-hHHHHHHHHHHHhcCC
Q 005643 248 -----AARINEMFSIARRNAPAFVFVDEIDAIAGRHARK--DP-RRRATFEALIAQLDGD 299 (686)
Q Consensus 248 -----~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~--~~-e~~~~l~~LL~~ld~~ 299 (686)
...+..+........+.+|+||-|-++......+ .. .+...+.+++..|...
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~l 231 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRL 231 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHH
Confidence 0011222222334568899999999986432111 11 2334456666666553
No 415
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.50 E-value=0.0023 Score=64.87 Aligned_cols=33 Identities=33% Similarity=0.692 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
|+++||||+|||++|+.+|...|++.+. ..++.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 8999999999999999999999866554 44444
No 416
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.50 E-value=0.01 Score=57.56 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLA 225 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA 225 (686)
++..++.||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999984
No 417
>PRK04040 adenylate kinase; Provisional
Probab=96.49 E-value=0.0027 Score=63.37 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--CCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES--GLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~--g~~fi 233 (686)
|+-++++|+||+|||++++.++..+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5679999999999999999999998 55553
No 418
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.47 E-value=0.0096 Score=63.79 Aligned_cols=140 Identities=20% Similarity=0.217 Sum_probs=75.6
Q ss_pred ccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHH
Q 005643 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSI 257 (686)
Q Consensus 178 e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~ 257 (686)
+.++.+.+++.+.-.+. .+..+-++|+|+.|+|||++.+.+..-+|-....+..+........ .-|..
T Consensus 56 ~~~~~l~~~lg~~L~~~------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~------~~f~~ 123 (304)
T TIGR01613 56 ELIEYLQRVIGYSLTGN------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQE------HRFGL 123 (304)
T ss_pred HHHHHHHHHHhHHhcCC------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccC------CCchh
Confidence 35666667666543331 3456789999999999999999998877765433222222211100 02444
Q ss_pred HHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc----cCCcccccccccEEEEEecCCCCCC---cccc
Q 005643 258 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE----RTGIDRFSLRQAVIFICATNRPDEL---DLEF 330 (686)
Q Consensus 258 Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~----~~~~~~~~~~~~ViVIaaTN~p~~L---D~aL 330 (686)
+.-....+++.||++.-. . . .. ..+..|-+... ..+.+.+.-.....+|.+||..-.+ +.++
T Consensus 124 a~l~gk~l~~~~E~~~~~-~---~---~~----~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~ 192 (304)
T TIGR01613 124 ARLEGKRAVIGDEVQKGY-R---D---DE----STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGI 192 (304)
T ss_pred hhhcCCEEEEecCCCCCc-c---c---cH----HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhh
Confidence 444455688999986321 0 0 11 22333322110 0111122223346777888875443 5688
Q ss_pred ccCCccceEEEeC
Q 005643 331 VRPGRIDRRLYIG 343 (686)
Q Consensus 331 lrpgRFd~~I~v~ 343 (686)
.| |+ ..|.++
T Consensus 193 ~R--R~-~vi~f~ 202 (304)
T TIGR01613 193 KR--RL-RIIPFT 202 (304)
T ss_pred ee--eE-EEEecc
Confidence 88 77 455553
No 419
>PLN02674 adenylate kinase
Probab=96.45 E-value=0.0049 Score=63.95 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=31.0
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
+++..++|.||||+|||++|+.+|...|++. ++..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHH
Confidence 3456799999999999999999999988654 45555543
No 420
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.45 E-value=0.009 Score=65.35 Aligned_cols=23 Identities=52% Similarity=0.730 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (686)
-+++.|.||||||.+|-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999999987
No 421
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.44 E-value=0.0056 Score=64.36 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=43.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CCeEEEe-Cccccc-----h-hh-hHHHHHHHHHHHHHhcCCeEEEEccch
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESG---LPFVFAS-GAEFTD-----S-EK-SGAARINEMFSIARRNAPAFVFVDEID 272 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g---~~fi~is-~s~~~~-----~-~~-~~~~~vr~lF~~Ak~~~P~ILfIDEiD 272 (686)
.+++.||+|+|||++++++..... ..++.+. ..++.- . .. ........+...+....|.+|+++|+.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 488999999999999999977653 2344332 111110 0 00 011125566667777889999999995
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.44 E-value=0.02 Score=56.72 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 005643 207 VLLSGPPGTGKTLFARTLA 225 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA 225 (686)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 423
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.43 E-value=0.0056 Score=63.93 Aligned_cols=46 Identities=39% Similarity=0.618 Sum_probs=36.9
Q ss_pred hCCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchh
Q 005643 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSE 244 (686)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~ 244 (686)
.|.+..+.+|++|+||||||+++..++.+ .|.|+++++..+-.+..
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 35677788999999999999999888553 38899999987765543
No 424
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.43 E-value=0.055 Score=55.74 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 005643 207 VLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e 227 (686)
-+|.||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999998753
No 425
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0021 Score=62.52 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
-++++|.||||||++++.++ ++|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9999887654
No 426
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.42 E-value=0.0062 Score=65.99 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.+.+.|.|+||||||+|++++++..+.+++.-.+.++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 45799999999999999999999999998765555443
No 427
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.024 Score=55.43 Aligned_cols=88 Identities=22% Similarity=0.259 Sum_probs=52.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCC----------C-----------eEEEeCc--cccc-hh-----hhHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGL----------P-----------FVFASGA--EFTD-SE-----KSGAARINE 253 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~----------~-----------fi~is~s--~~~~-~~-----~~~~~~vr~ 253 (686)
+...+.|.||+|+|||+|++.+++.... + +.++.-. -+.. .. -.+-.+.+-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv 104 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL 104 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence 4456899999999999999999885310 0 1111110 0111 00 112233455
Q ss_pred HHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005643 254 MFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 254 lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~l 296 (686)
.+..|-...|.|+++||-.+-. +......+.+++..+
T Consensus 105 ~laral~~~p~illlDEPt~~L------D~~~~~~l~~~l~~~ 141 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGL------DPESRREFWELLREL 141 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCC------CHHHHHHHHHHHHHH
Confidence 5666667889999999976543 334445555666555
No 428
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.017 Score=63.24 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=57.9
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh--CCCeEEEeCccccchhhh---------------HHHHHHHHHHHHHhcCCe
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES--GLPFVFASGAEFTDSEKS---------------GAARINEMFSIARRNAPA 264 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~--g~~fi~is~s~~~~~~~~---------------~~~~vr~lF~~Ak~~~P~ 264 (686)
-+..-+|+-|.||.|||+|.-.+|..+ ..+++|+++.+-...... .+.++.++........|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 444557888999999999887776654 238999999885443222 233467888888899999
Q ss_pred EEEEccchhhhccC
Q 005643 265 FVFVDEIDAIAGRH 278 (686)
Q Consensus 265 ILfIDEiDal~~~~ 278 (686)
+++||-|..+....
T Consensus 171 lvVIDSIQT~~s~~ 184 (456)
T COG1066 171 LVVIDSIQTLYSEE 184 (456)
T ss_pred EEEEeccceeeccc
Confidence 99999999997654
No 429
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.39 E-value=0.012 Score=57.99 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=41.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh-------------CCCeEEEeCccccch-----------h-------hh--------
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES-------------GLPFVFASGAEFTDS-----------E-------KS-------- 246 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~-------------g~~fi~is~s~~~~~-----------~-------~~-------- 246 (686)
-++++||||+|||+++-.+|... +.+++++++..-... . ..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 47899999999999999886643 236777775542100 0 00
Q ss_pred -----------HHHHHHHHHHHHHh-cCCeEEEEccchhhhcc
Q 005643 247 -----------GAARINEMFSIARR-NAPAFVFVDEIDAIAGR 277 (686)
Q Consensus 247 -----------~~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~ 277 (686)
....+..+.+.++. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01123445555666 56899999999999754
No 430
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.39 E-value=0.015 Score=56.54 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.5
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
.+.-.++|.||+|+|||+|.|++|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 44556999999999999999999973
No 431
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.37 E-value=0.0069 Score=65.51 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=53.3
Q ss_pred ccc-ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC-CCeEEEeCccccch-hh
Q 005643 169 MYK-EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-LPFVFASGAEFTDS-EK 245 (686)
Q Consensus 169 ~f~-dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g-~~fi~is~s~~~~~-~~ 245 (686)
.|+ ++.|.+ +.|.++|++++... +.+....+-++|.||+|+|||++++.+.+-+. .+++.+-.+-..+. ..
T Consensus 58 ~f~~~~~G~~---~~i~~lV~~fk~AA---~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 58 FFEDEFYGME---ETIERLVNYFKSAA---QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred CccccccCcH---HHHHHHHHHHHHHH---hccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 456 778876 67888888887662 11223456678999999999999999977552 36666644443333 33
Q ss_pred hHHHHHHHHHH
Q 005643 246 SGAARINEMFS 256 (686)
Q Consensus 246 ~~~~~vr~lF~ 256 (686)
.....++..|.
T Consensus 132 L~P~~~r~~~~ 142 (358)
T PF08298_consen 132 LFPKELRREFE 142 (358)
T ss_pred hCCHhHHHHHH
Confidence 33444555554
No 432
>PRK01184 hypothetical protein; Provisional
Probab=96.36 E-value=0.0031 Score=62.13 Aligned_cols=29 Identities=38% Similarity=0.708 Sum_probs=25.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
-|+|+||||+||||+++ ++.+.|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788999888654
No 433
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.35 E-value=0.0028 Score=57.74 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 005643 207 VLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~ 228 (686)
|+|.|+||||||++|+.++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 434
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.34 E-value=0.0037 Score=68.08 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=47.4
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeC-cccc-----------ch--hhhHHHHHHHHHHHHHhcCCe
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASG-AEFT-----------DS--EKSGAARINEMFSIARRNAPA 264 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~-s~~~-----------~~--~~~~~~~vr~lF~~Ak~~~P~ 264 (686)
.+..+++|+.||+|+|||++++++++.... .++.+-- .++. .. .+.+.-...+++..+-+..|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 445678999999999999999999987643 2222110 0110 00 011122356788888888999
Q ss_pred EEEEccch
Q 005643 265 FVFVDEID 272 (686)
Q Consensus 265 ILfIDEiD 272 (686)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999984
No 435
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.34 E-value=0.006 Score=57.40 Aligned_cols=29 Identities=38% Similarity=0.536 Sum_probs=25.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP 231 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (686)
+..-++|.|+.|+|||+++|.+++.+|.+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34578999999999999999999999865
No 436
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.33 E-value=0.026 Score=56.62 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLA 225 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA 225 (686)
+.++|.||.|+|||++.|.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999997
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.33 E-value=0.0054 Score=61.81 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=46.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhH
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRR 285 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~ 285 (686)
-++|+||+|||||.+|-++|+..|.|++..+.-..-.....+..+-. - +...+-.=++|||-..- .+.-.-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~--~--~el~~~~RiyL~~r~l~-----~G~i~a 73 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPT--P--SELKGTRRIYLDDRPLS-----DGIINA 73 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT-----S--GGGTT-EEEES----GG-----G-S--H
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCC--H--HHHcccceeeecccccc-----CCCcCH
Confidence 46899999999999999999999999999986665443211111110 0 00111112777865422 122333
Q ss_pred HHHHHHHHHHhcCCcc
Q 005643 286 RATFEALIAQLDGDKE 301 (686)
Q Consensus 286 ~~~l~~LL~~ld~~~~ 301 (686)
......|+..++....
T Consensus 74 ~ea~~~Li~~v~~~~~ 89 (233)
T PF01745_consen 74 EEAHERLISEVNSYSA 89 (233)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 4566778888877665
No 438
>PF13479 AAA_24: AAA domain
Probab=96.32 E-value=0.0068 Score=61.53 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=39.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeE-EEeCcc--c--c-c--h-hhhHHHHHHHHHHHH--HhcCCeEEEEccch
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV-FASGAE--F--T-D--S-EKSGAARINEMFSIA--RRNAPAFVFVDEID 272 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi-~is~s~--~--~-~--~-~~~~~~~vr~lF~~A--k~~~P~ILfIDEiD 272 (686)
+-.++|||+||+|||++|..+ +.|++ .+..+. + . . . ....-..+.+.+..+ .......|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 456999999999999998887 44433 222221 0 0 0 0 011233455555443 23445699999988
Q ss_pred hh
Q 005643 273 AI 274 (686)
Q Consensus 273 al 274 (686)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 86
No 439
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.32 E-value=0.018 Score=66.57 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=24.1
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~ 226 (686)
.+++...+|+.||+|||||+|.||+|+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 355677899999999999999999998
No 440
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.29 E-value=0.0027 Score=60.59 Aligned_cols=33 Identities=42% Similarity=0.649 Sum_probs=26.5
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 209 LSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 209 L~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
|.||||+|||++|+.||.+.|. ..++..++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHH
Confidence 6899999999999999999875 45666665543
No 441
>PRK10867 signal recognition particle protein; Provisional
Probab=96.28 E-value=0.022 Score=64.00 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=46.2
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCccccchh---------------------hhHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFTDSE---------------------KSGAARINEMFS 256 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~~~~~~---------------------~~~~~~vr~lF~ 256 (686)
..|.-++++||+|+|||+++-.+|..+ |..+..+++..+.... ............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457889999999999999877776643 6777777776443210 001122334555
Q ss_pred HHHhcCCeEEEEccch
Q 005643 257 IARRNAPAFVFVDEID 272 (686)
Q Consensus 257 ~Ak~~~P~ILfIDEiD 272 (686)
.++.....+|+||=.-
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 6666667789988543
No 442
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.28 E-value=0.0048 Score=66.31 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=46.8
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeC-cccc-------c---h-h--hhHHHHHHHHHHHHHhcCCe
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASG-AEFT-------D---S-E--KSGAARINEMFSIARRNAPA 264 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~-s~~~-------~---~-~--~~~~~~vr~lF~~Ak~~~P~ 264 (686)
.+...++++.||+|+|||++++++++.... ..+.+.- .++. . . . +...-.+.+++..+....|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 445678999999999999999999886532 2222210 0110 0 0 0 01112356777778888999
Q ss_pred EEEEccch
Q 005643 265 FVFVDEID 272 (686)
Q Consensus 265 ILfIDEiD 272 (686)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999985
No 443
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.28 E-value=0.053 Score=56.09 Aligned_cols=131 Identities=13% Similarity=0.215 Sum_probs=73.9
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCC---CeEEEeCccccchh--------------hhH-H----HH---HHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGL---PFVFASGAEFTDSE--------------KSG-A----AR---INEMFS 256 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~---~fi~is~s~~~~~~--------------~~~-~----~~---vr~lF~ 256 (686)
+.|-.+.+.|++|||||++++.+-....- +++.++ ....... ... . .. +.....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t-~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT-PEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe-cCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 44667999999999999999999765533 223222 2111100 000 0 01 111211
Q ss_pred HHHh---cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccC
Q 005643 257 IARR---NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (686)
Q Consensus 257 ~Ak~---~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp 333 (686)
.... ..+++|+||++-. + ....+.+.+++.. |. .-++-+|.++...-.||+.++.
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~-----~~k~~~l~~~~~~--gR-----------H~~is~i~l~Q~~~~lp~~iR~- 147 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K-----KLKSKILRQFFNN--GR-----------HYNISIIFLSQSYFHLPPNIRS- 147 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c-----hhhhHHHHHHHhc--cc-----------ccceEEEEEeeecccCCHHHhh-
Confidence 1111 3468999999732 1 1223345555532 21 1237788888888999999876
Q ss_pred CccceEEEeCCCCHHHHHHHHHHH
Q 005643 334 GRIDRRLYIGLPDAKQRVQIFDVH 357 (686)
Q Consensus 334 gRFd~~I~v~~Pd~~eR~~Il~~~ 357 (686)
-.+..+-+. -+......|++.+
T Consensus 148 -n~~y~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 148 -NIDYFIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred -cceEEEEec-CcHHHHHHHHHhc
Confidence 677777665 4666666666544
No 444
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.029 Score=61.86 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=29.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~ 239 (686)
.|+-++|.||+|+|||+++..+|..+ |..+..+++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 36789999999999999999998765 44555566544
No 445
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.26 E-value=0.022 Score=67.79 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCcc
Q 005643 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDL 328 (686)
Q Consensus 249 ~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~ 328 (686)
++-|-.+..|--..|.||++||.=+-. +.+.++.+.+-|.++... ..+|..|.|+..+
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaL------D~~sE~~I~~~L~~~~~~--------------~T~I~IaHRl~ti-- 671 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSAL------DPETEAIILQNLLQILQG--------------RTVIIIAHRLSTI-- 671 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCccccc------CHhHHHHHHHHHHHHhcC--------------CeEEEEEccchHh--
Confidence 344555666667889999999975433 445555566655555432 2455557775543
Q ss_pred ccccCCccceEEEeCC
Q 005643 329 EFVRPGRIDRRLYIGL 344 (686)
Q Consensus 329 aLlrpgRFd~~I~v~~ 344 (686)
+ ++|+.+.++-
T Consensus 672 ---~--~adrIiVl~~ 682 (709)
T COG2274 672 ---R--SADRIIVLDQ 682 (709)
T ss_pred ---h--hccEEEEccC
Confidence 3 6777776643
No 446
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.26 E-value=0.015 Score=56.57 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
-+++.||||+|||++++.+|..+ |..+..+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 36889999999999999998764 667777776644
No 447
>PRK04182 cytidylate kinase; Provisional
Probab=96.25 E-value=0.0041 Score=60.50 Aligned_cols=29 Identities=52% Similarity=0.762 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
.|+|.|+||+|||++++.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999998764
No 448
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.24 E-value=0.016 Score=61.57 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=30.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh----C-CCeEEEeCccc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES----G-LPFVFASGAEF 240 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g-~~fi~is~s~~ 240 (686)
.++.++|.||+|+|||+++..+|..+ | ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 46788999999999999999998754 3 56777776553
No 449
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.24 E-value=0.0064 Score=61.10 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=17.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (686)
-.++.||||||||+++.+++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38899999999998777776654
No 450
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.23 E-value=0.0035 Score=60.52 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
|.|+|+||||||+|+++++.. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999988 888763
No 451
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.23 E-value=0.039 Score=63.45 Aligned_cols=77 Identities=25% Similarity=0.234 Sum_probs=51.6
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchh-------h----------------------hH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-------K----------------------SG 247 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~-------~----------------------~~ 247 (686)
|.+....++++|+||+|||+++..++.+. |.++++++..+-.+.. + ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56667778999999999999999987643 7788888765422110 0 00
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 005643 248 AARINEMFSIARRNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 248 ~~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (686)
...+..+-.......+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 11122333344556788999999998853
No 452
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0054 Score=61.31 Aligned_cols=22 Identities=59% Similarity=0.979 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 005643 207 VLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~ 228 (686)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 453
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.21 E-value=0.0044 Score=65.90 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~ 239 (686)
++-++|.|+||||||++|+.++..+. .++.++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~ 36 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDD 36 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccH
Confidence 45689999999999999999999983 344444433
No 454
>PLN02199 shikimate kinase
Probab=96.20 E-value=0.0077 Score=63.89 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 179 VWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 179 ~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
.|+.-+++..++.+. +|+|.|.+|+|||++++.+|+.+|.+|+..+
T Consensus 89 Lk~~a~~i~~~l~~~------------~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 89 LKRKAEEVKPYLNGR------------SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred HHHHHHHHHHHcCCC------------EEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 555555555555443 8999999999999999999999999998543
No 455
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.18 E-value=0.01 Score=65.36 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=43.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEEeCc-ccc------------chhhhHHHHHHHHHHHHHhcCCeEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA-EFT------------DSEKSGAARINEMFSIARRNAPAFV 266 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g-----~~fi~is~s-~~~------------~~~~~~~~~vr~lF~~Ak~~~P~IL 266 (686)
..+|++||+|+|||++++++..... ..++.+--. ++. ...+............+-+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3578999999999999999987762 234433211 110 0011111234556667777899999
Q ss_pred EEccch
Q 005643 267 FVDEID 272 (686)
Q Consensus 267 fIDEiD 272 (686)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999985
No 456
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.17 E-value=0.031 Score=56.40 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=71.3
Q ss_pred hhhhhC--CccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc-------------------------------
Q 005643 195 QYYERG--VQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA------------------------------- 238 (686)
Q Consensus 195 ~~~~~g--~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s------------------------------- 238 (686)
.-+++| ++.+.=+++.|+.|||||.|...++--+ |....+++..
T Consensus 17 lDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~ 96 (235)
T COG2874 17 LDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPV 96 (235)
T ss_pred HHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEe
Confidence 334444 4556668889999999999999986522 3333333311
Q ss_pred ---cccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 239 ---EFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 239 ---~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
.+..........+..+.+.-+.+...||+||-+..+.... ....+.+++..+..+.... -
T Consensus 97 ~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l~d~g-----------K 159 (235)
T COG2874 97 NLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKLSDLG-----------K 159 (235)
T ss_pred cccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------cHHHHHHHHHHHHHHHhCC-----------C
Confidence 1111112223345666666666677899999999987431 2334455555555444322 2
Q ss_pred EEEecCCCCCCcccccc
Q 005643 316 FICATNRPDELDLEFVR 332 (686)
Q Consensus 316 VIaaTN~p~~LD~aLlr 332 (686)
+|..|-+|..++++.+-
T Consensus 160 vIilTvhp~~l~e~~~~ 176 (235)
T COG2874 160 VIILTVHPSALDEDVLT 176 (235)
T ss_pred EEEEEeChhhcCHHHHH
Confidence 33335668888888775
No 457
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.16 E-value=0.0048 Score=59.52 Aligned_cols=28 Identities=43% Similarity=0.775 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
|.++|+||+|||++|+.+|+.+|.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999998764
No 458
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.15 E-value=0.025 Score=63.24 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=31.2
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEF 240 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~ 240 (686)
..|.-++|+|++|+||||++..+|..+ |..+..+++..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 357789999999999999999998765 667777776443
No 459
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.15 E-value=0.03 Score=62.79 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=45.9
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHH----hCCCeEEEeCccccchhh---------------------hHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKE----SGLPFVFASGAEFTDSEK---------------------SGAARINEMFS 256 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e----~g~~fi~is~s~~~~~~~---------------------~~~~~vr~lF~ 256 (686)
..|.-++++|++|+|||+++..+|.. .|..+..++|..+..... ..........+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 45788999999999999998888765 356777777765432100 00122344555
Q ss_pred HHHhcCCeEEEEccc
Q 005643 257 IARRNAPAFVFVDEI 271 (686)
Q Consensus 257 ~Ak~~~P~ILfIDEi 271 (686)
.++.....+|+||=.
T Consensus 177 ~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 177 YAKENGFDVVIVDTA 191 (428)
T ss_pred HHHhcCCCEEEEeCC
Confidence 565666678988854
No 460
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.12 E-value=0.04 Score=54.20 Aligned_cols=90 Identities=22% Similarity=0.282 Sum_probs=52.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhC--CCeEEEeCccccc---------------------------h-h--hhHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTD---------------------------S-E--KSGAA 249 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g--~~fi~is~s~~~~---------------------------~-~--~~~~~ 249 (686)
.+..-+.|.||+|+|||+|++.+++... .--+.+++.++.. . . -.+-.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 3455689999999999999999998542 1112233222110 0 0 01112
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005643 250 RINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (686)
Q Consensus 250 ~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld 297 (686)
+-+-.+..|-...|.++++||--+=. +......+.+++..+.
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~L------D~~~~~~~~~~l~~~~ 144 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHL------DIAHQIELLELLRRLA 144 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCC------CHHHHHHHHHHHHHHH
Confidence 23344455556779999999975332 3344555666666653
No 461
>PRK08233 hypothetical protein; Provisional
Probab=96.10 E-value=0.0061 Score=59.47 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-CCeEEEeCc
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESG-LPFVFASGA 238 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g-~~fi~is~s 238 (686)
.-|.+.|+||+||||+|+.++..++ .+++..+..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 4577889999999999999999885 445555443
No 462
>PRK14526 adenylate kinase; Provisional
Probab=96.07 E-value=0.0055 Score=62.26 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.++|.||||+|||++++.+|+..+.+.+ +..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 3889999999999999999999886654 455543
No 463
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.04 E-value=0.013 Score=72.72 Aligned_cols=143 Identities=19% Similarity=0.219 Sum_probs=90.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh---hh------H-HHHHHHHHHHHHhcCCeEEEEccchhh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE---KS------G-AARINEMFSIARRNAPAFVFVDEIDAI 274 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~---~~------~-~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (686)
-.+||.||..+|||++...+|.+.|-.|+.|+-.+..+.. |. | .+--..+.-.|-++. --|++||+.-.
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 4599999999999999999999999999999977654320 10 1 111123333444444 35778999754
Q ss_pred hccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC------CCccccccCCccceEEEeCCCCHH
Q 005643 275 AGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD------ELDLEFVRPGRIDRRLYIGLPDAK 348 (686)
Q Consensus 275 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~------~LD~aLlrpgRFd~~I~v~~Pd~~ 348 (686)
.. ..-..+|.||.--...-.........+..++.++||-|.|. .|..|++. || ..++|.--..+
T Consensus 968 pT-------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFddiped 1037 (4600)
T COG5271 968 PT-------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDDIPED 1037 (4600)
T ss_pred cH-------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-HhhhcccCcHH
Confidence 32 23334555554222111111111233445688888889875 47788887 88 56777777788
Q ss_pred HHHHHHHHHh
Q 005643 349 QRVQIFDVHS 358 (686)
Q Consensus 349 eR~~Il~~~l 358 (686)
+...||...+
T Consensus 1038 Ele~ILh~rc 1047 (4600)
T COG5271 1038 ELEEILHGRC 1047 (4600)
T ss_pred HHHHHHhccC
Confidence 8888886443
No 464
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.04 E-value=0.012 Score=65.42 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=28.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
..+.|.|.|++|||||+|++++|..+|.+.+.-
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E 250 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWE 250 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeee
Confidence 357799999999999999999999999886543
No 465
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.01 E-value=0.018 Score=63.30 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 178 e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+.+..+..+++.+.+ ..|..+++.||.|||||++.+++...+
T Consensus 5 eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 5 EQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 445555555555433 256789999999999999999997766
No 466
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.00 E-value=0.056 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~ 226 (686)
.+-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999963
No 467
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.00 E-value=0.024 Score=62.14 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (686)
-.+|+||||||||++++.+|+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999998865
No 468
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.99 E-value=0.0076 Score=58.95 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
+.|.-++|.|+||+|||++|+++++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998875
No 469
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.97 E-value=0.047 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.7
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.+...+.|.||+|+|||+|.+.+++..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445678999999999999999999875
No 470
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.95 E-value=0.046 Score=57.72 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=29.5
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~ 239 (686)
..++-++|.||+|+|||+++..+|..+ |..+..+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 457888999999999999999988755 55666666543
No 471
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.94 E-value=0.032 Score=53.93 Aligned_cols=39 Identities=28% Similarity=0.472 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~ 242 (686)
|.-|.|+|.||+|||++|+++...+ |.+.+.+++..+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 4568899999999999999998765 88999999877654
No 472
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.036 Score=54.39 Aligned_cols=89 Identities=25% Similarity=0.324 Sum_probs=51.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCC--eEEEeCc-----------------------ccc-c-hh-------hhHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP--FVFASGA-----------------------EFT-D-SE-------KSGA 248 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~--fi~is~s-----------------------~~~-~-~~-------~~~~ 248 (686)
...-+.|.||.|+|||+|++++++..... -+.+++. .+. . .. -.+-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G 104 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGG 104 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHH
Confidence 44568899999999999999998753110 0111110 000 0 00 1112
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005643 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (686)
Q Consensus 249 ~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld 297 (686)
.+-+-.+..|-...|.++++||--+=. +......+.+++.++.
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~L------D~~~~~~l~~~l~~~~ 147 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSAL------DPITRREVRALLKSLQ 147 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccC------CHHHHHHHHHHHHHHH
Confidence 334555666667789999999975432 4444555666666653
No 473
>PLN02459 probable adenylate kinase
Probab=95.92 E-value=0.0085 Score=62.65 Aligned_cols=35 Identities=29% Similarity=0.509 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
..++|.||||+|||++|+.+|...|++. +++.++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdll 64 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDLV 64 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHHH
Confidence 4588899999999999999999988654 4555554
No 474
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.90 E-value=0.014 Score=65.67 Aligned_cols=70 Identities=23% Similarity=0.363 Sum_probs=44.1
Q ss_pred CceE-EEEcCCCCcHHHHHHHHHHHhCCCeE-EEeCccccchhhhHH------HH----HHHHHHHHHhcCCeEEEEccc
Q 005643 204 VRGV-LLSGPPGTGKTLFARTLAKESGLPFV-FASGAEFTDSEKSGA------AR----INEMFSIARRNAPAFVFVDEI 271 (686)
Q Consensus 204 p~gv-LL~GPPGTGKT~LAralA~e~g~~fi-~is~s~~~~~~~~~~------~~----vr~lF~~Ak~~~P~ILfIDEi 271 (686)
|.|+ |+.||.|+|||++.-++.++++.+.. .++..+-++....+. .+ ....++..-++.|.||++.||
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEI 336 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEI 336 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEecc
Confidence 4565 56699999999999999998876654 333333332211110 01 223344445678999999999
Q ss_pred hh
Q 005643 272 DA 273 (686)
Q Consensus 272 Da 273 (686)
-.
T Consensus 337 RD 338 (500)
T COG2804 337 RD 338 (500)
T ss_pred CC
Confidence 53
No 475
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.89 E-value=0.038 Score=57.88 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=60.2
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHhC---------CCeEEEeCcc-ccch-hhhHH--------------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESG---------LPFVFASGAE-FTDS-EKSGA-------------------- 248 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g---------~~fi~is~s~-~~~~-~~~~~-------------------- 248 (686)
|++...-.=|+||||+|||.|+-.+|-..- ..+++++... |... .....
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 344444455999999999999998876543 3478888654 2211 10000
Q ss_pred ------HHHHHHHHHHHhcCCeEEEEccchhhhccCC---CCChhHHHHHHHHHHHhcCCcc
Q 005643 249 ------ARINEMFSIARRNAPAFVFVDEIDAIAGRHA---RKDPRRRATFEALIAQLDGDKE 301 (686)
Q Consensus 249 ------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~---~~~~e~~~~l~~LL~~ld~~~~ 301 (686)
..+..+-.......-.+|+||-|-++..... +...++...+..++..|.....
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~ 175 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLAR 175 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHH
Confidence 0122222222344568999999999975321 1224556777777777765443
No 476
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.82 E-value=0.017 Score=60.91 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=44.6
Q ss_pred Cce-EEEEcCCCCcHHHHHHHHHHHhCCC--eEEEeCcc-----------ccch--hhhHHHHHHHHHHHHHhcCCeEEE
Q 005643 204 VRG-VLLSGPPGTGKTLFARTLAKESGLP--FVFASGAE-----------FTDS--EKSGAARINEMFSIARRNAPAFVF 267 (686)
Q Consensus 204 p~g-vLL~GPPGTGKT~LAralA~e~g~~--fi~is~s~-----------~~~~--~~~~~~~vr~lF~~Ak~~~P~ILf 267 (686)
|+| ||+.||.|+|||+..-++-...|.. ...++..+ +... .|.....+....+.|-+..|.||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 556 5667999999999999998877542 22222222 2221 222223344555666677899999
Q ss_pred Eccchhh
Q 005643 268 VDEIDAI 274 (686)
Q Consensus 268 IDEiDal 274 (686)
+-|+-..
T Consensus 204 vGEmRD~ 210 (353)
T COG2805 204 VGEMRDL 210 (353)
T ss_pred EeccccH
Confidence 9988533
No 477
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.82 E-value=0.053 Score=63.28 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.0
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+++..-+.|.||+|+|||||++.+++..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455669999999999999999998854
No 478
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.78 E-value=0.39 Score=53.43 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCcHHHHH--HHHHHHhCCCeEEEeCcccc
Q 005643 204 VRGVLLSGPPGTGKTLFA--RTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LA--ralA~e~g~~fi~is~s~~~ 241 (686)
..-|+++||.|+||+.|+ +++.+. ..+++++|..+.
T Consensus 17 ~TFIvV~GPrGSGK~elV~d~~L~~r--~~vL~IDC~~i~ 54 (431)
T PF10443_consen 17 NTFIVVQGPRGSGKRELVMDHVLKDR--KNVLVIDCDQIV 54 (431)
T ss_pred CeEEEEECCCCCCccHHHHHHHHhCC--CCEEEEEChHhh
Confidence 445889999999999999 666553 337777777654
No 479
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.76 E-value=0.014 Score=58.75 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=30.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC-CCeEEEeCcccc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG-LPFVFASGAEFT 241 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g-~~fi~is~s~~~ 241 (686)
.+.-|.|.|++|+|||||+++|++.++ ..+..++..++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 456789999999999999999999873 345556655543
No 480
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.75 E-value=0.013 Score=57.16 Aligned_cols=36 Identities=36% Similarity=0.492 Sum_probs=28.3
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s 238 (686)
.+.-+.|.|+||+|||++|++++..+ |..+..+++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 35678899999999999999999876 4445556543
No 481
>PRK12338 hypothetical protein; Provisional
Probab=95.73 E-value=0.01 Score=63.83 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=27.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
.|.-+++.|+||||||++|+++|..+|...+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4678999999999999999999999987653
No 482
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.73 E-value=0.053 Score=63.36 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.2
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+++..-+.|.||+|+|||||++.+++..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556679999999999999999998865
No 483
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.71 E-value=0.09 Score=53.87 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=57.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHH-H----hCCCe---------E-----EEeCccccch----hhhHHHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAK-E----SGLPF---------V-----FASGAEFTDS----EKSGAARINEMFSIAR 259 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~-e----~g~~f---------i-----~is~s~~~~~----~~~~~~~vr~lF~~Ak 259 (686)
..+-++|.||.|+|||++.+.++. . .|.++ + .+...+-... +..-..++..+++.+.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~ 109 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT 109 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC
Confidence 345689999999999999999977 2 23221 1 1111111111 1222334556665553
Q ss_pred hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCC
Q 005643 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDEL 326 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~L 326 (686)
.+++++|||+.+=. ...+.......+++.+.... +..+|.+|...+..
T Consensus 110 --~~sLvllDE~~~gT-----~~~d~~~i~~~il~~l~~~~------------~~~~i~~TH~~~l~ 157 (222)
T cd03287 110 --SRSLVILDELGRGT-----STHDGIAIAYATLHYLLEEK------------KCLVLFVTHYPSLG 157 (222)
T ss_pred --CCeEEEEccCCCCC-----ChhhHHHHHHHHHHHHHhcc------------CCeEEEEcccHHHH
Confidence 57899999985311 11122223345555554321 13677788877654
No 484
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.22 Score=51.45 Aligned_cols=184 Identities=18% Similarity=0.163 Sum_probs=93.8
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc---hhhh---HHHHHHHHH---HHHHh---cCC-eEEE
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD---SEKS---GAARINEMF---SIARR---NAP-AFVF 267 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~---~~~~---~~~~vr~lF---~~Ak~---~~P-~ILf 267 (686)
.+.|.-+||=|+||+|||++|.-+|.++|+.-+. +...+-+ .... ....-...| +..+. ..| +.=|
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi-sTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF 164 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVI-STDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGF 164 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceee-cchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhH
Confidence 3458889999999999999999999999997542 1111111 1000 000011112 21211 111 1113
Q ss_pred EccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCH
Q 005643 268 VDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDA 347 (686)
Q Consensus 268 IDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~ 347 (686)
.|....+. .-++..+..--.. ..++++=+.-=-|..+++..+. --...+.+-.+|.
T Consensus 165 ~dqa~~V~-----------~GI~~VI~RAi~e-----------G~~lIIEGvHlVPg~i~~~~~~--~n~~~~~l~i~de 220 (299)
T COG2074 165 EDQASAVM-----------VGIEAVIERAIEE-----------GEDLIIEGVHLVPGLIKEEALG--NNVFMFMLYIADE 220 (299)
T ss_pred HHHhHHHH-----------HHHHHHHHHHHhc-----------CcceEEEeeeeccccccHhhhc--cceEEEEEEeCCH
Confidence 33333332 1122222221110 0113333333336667766652 2234556666777
Q ss_pred HHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 348 KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
+.-+.=|-...+....... ....+.. -.++..+-......|...|-..|..+|+.+++++++
T Consensus 221 e~Hr~RF~~R~~~t~~~rp--~~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il 282 (299)
T COG2074 221 ELHRERFYDRIRYTHASRP--GGRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRIL 282 (299)
T ss_pred HHHHHHHHHHHHHHhccCc--hhHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHH
Confidence 6655544433222211111 1223322 235667777777778788888999999999999876
No 485
>PRK14529 adenylate kinase; Provisional
Probab=95.70 E-value=0.0087 Score=61.31 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.++|.||||+|||++++.+|..++.+.+ |..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 3889999999999999999999998765 444443
No 486
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.70 E-value=0.045 Score=54.19 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
|.|+|.+|||||++++.++...+.+++ ++.++.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~ 34 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIA 34 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHH
Confidence 679999999999999999988667765 444543
No 487
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.69 E-value=0.0097 Score=58.92 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
..++|.||+|+|||++++.++...+.+|+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 46889999999999999999998776543
No 488
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.69 E-value=0.049 Score=52.88 Aligned_cols=29 Identities=28% Similarity=0.189 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCeEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVF 234 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~fi~ 234 (686)
-|.+|+++|+|||++|-++|-.+ |..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36788999999999999986543 555444
No 489
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.66 E-value=0.028 Score=61.70 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=41.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC------CCeEEEeCccccch----------------hhhHHHHHHHHHHHHHhcC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESG------LPFVFASGAEFTDS----------------EKSGAARINEMFSIARRNA 262 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g------~~fi~is~s~~~~~----------------~~~~~~~vr~lF~~Ak~~~ 262 (686)
..++++||+|+|||+++++++++.. ..++.+ .+-.+. .+............+-...
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~--EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY--EAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe--CCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 4588999999999999999988752 223221 111110 0000112344455566778
Q ss_pred CeEEEEccch
Q 005643 263 PAFVFVDEID 272 (686)
Q Consensus 263 P~ILfIDEiD 272 (686)
|.++++.|+-
T Consensus 213 Pd~i~vGEiR 222 (358)
T TIGR02524 213 PHAILVGEAR 222 (358)
T ss_pred CCEEeeeeeC
Confidence 9999999874
No 490
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.66 E-value=0.027 Score=59.46 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=36.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCcccc--ch-h--hhHHHH----HHHHHHHHHhcCCeEEEEccchhh
Q 005643 207 VLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFT--DS-E--KSGAAR----INEMFSIARRNAPAFVFVDEIDAI 274 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~--~~-~--~~~~~~----vr~lF~~Ak~~~P~ILfIDEiDal 274 (686)
|+|+|-||+|||++|+.|+.. .+..+..++-..+. .. + ...++. ++..++.+-.. ..||++|+.-.+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence 789999999999999999875 46677777744433 11 1 112333 44444444333 379999998877
Q ss_pred h
Q 005643 275 A 275 (686)
Q Consensus 275 ~ 275 (686)
-
T Consensus 83 K 83 (270)
T PF08433_consen 83 K 83 (270)
T ss_dssp H
T ss_pred H
Confidence 4
No 491
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.64 E-value=0.11 Score=51.69 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.2
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
++..-+.|.||+|+|||+|++++++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999999853
No 492
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.64 E-value=0.044 Score=54.00 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=31.5
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcccc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~ 241 (686)
..+.-+.|.|+||+|||++|+++++.+ |...+.+++..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 346678999999999999999999876 4456677765543
No 493
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.092 Score=52.20 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=22.3
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
.+..-+.|.||+|+|||+|++.+++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34556899999999999999999973
No 494
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.62 E-value=0.013 Score=57.85 Aligned_cols=36 Identities=36% Similarity=0.570 Sum_probs=28.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccc
Q 005643 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTD 242 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~ 242 (686)
|.+.|+||+|||++|+.++..+ |.++..++..+|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 6789999999999999999886 45666676666543
No 495
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.61 E-value=0.07 Score=51.37 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHhC----CCeEEEeC
Q 005643 205 RGVLLSGPPGTGKTL-FARTLAKESG----LPFVFASG 237 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~-LAralA~e~g----~~fi~is~ 237 (686)
+.+++.||+|||||+ ++..+..... ..++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 579999999999999 5555544332 33555554
No 496
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.59 E-value=0.034 Score=57.97 Aligned_cols=39 Identities=31% Similarity=0.500 Sum_probs=29.7
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s 238 (686)
|..+..=++|.|+||.|||++|-.+|..+ +.+++++|..
T Consensus 15 G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlE 57 (259)
T PF03796_consen 15 GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLE 57 (259)
T ss_dssp SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 45555567899999999999999997643 5788888864
No 497
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.58 E-value=0.022 Score=62.06 Aligned_cols=69 Identities=28% Similarity=0.376 Sum_probs=45.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeC-cccc-------ch-------hhhHHHHHHHHHHHHHhcCCeEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASG-AEFT-------DS-------EKSGAARINEMFSIARRNAPAFV 266 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~-s~~~-------~~-------~~~~~~~vr~lF~~Ak~~~P~IL 266 (686)
.+++++.|++|+|||++.+++.+...- ..+.+.. .++. .. .+.+.-.+.+++..+-+..|..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 468999999999999999999876532 1221111 1111 00 01122246678888888999999
Q ss_pred EEccch
Q 005643 267 FVDEID 272 (686)
Q Consensus 267 fIDEiD 272 (686)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999984
No 498
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.56 E-value=0.022 Score=64.98 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=41.8
Q ss_pred Cce-EEEEcCCCCcHHHHHHHHHHHhC---CCeEEEeC-ccccc-----h-hh-hHHHHHHHHHHHHHhcCCeEEEEccc
Q 005643 204 VRG-VLLSGPPGTGKTLFARTLAKESG---LPFVFASG-AEFTD-----S-EK-SGAARINEMFSIARRNAPAFVFVDEI 271 (686)
Q Consensus 204 p~g-vLL~GPPGTGKT~LAralA~e~g---~~fi~is~-s~~~~-----~-~~-~~~~~vr~lF~~Ak~~~P~ILfIDEi 271 (686)
+.| +|++||+|+|||++..++..+.+ ..++.+-- -++.- . .. ............+-...|.||++.|+
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEi 320 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEI 320 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCC
Confidence 345 68999999999999998877654 33443321 11110 0 00 00012334455566788999999998
Q ss_pred h
Q 005643 272 D 272 (686)
Q Consensus 272 D 272 (686)
-
T Consensus 321 R 321 (486)
T TIGR02533 321 R 321 (486)
T ss_pred C
Confidence 5
No 499
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.55 E-value=0.099 Score=64.85 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=47.6
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC--CCccccccCCccceEEE
Q 005643 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDRRLY 341 (686)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRFd~~I~ 341 (686)
-||+|||+..|.... ..+ +..++..|-.... .-+|.+|.+|.+|+ .|...++. -|..+|-
T Consensus 1142 IVVIIDE~AdLm~~~---~ke----vE~lI~rLAqkGR---------AaGIHLILATQRPsvDVItg~IKA--N~ptRIA 1203 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV---GKK----VEELIARLAQKAR---------AAGIHLVLATQRPSVDVITGLIKA--NIPTRIA 1203 (1355)
T ss_pred EEEEEcChHHHHhhh---hHH----HHHHHHHHHHHhh---------hcCeEEEEEecCcccccchHHHHh--hccceEE
Confidence 489999998885321 112 2333333322211 23589999999986 56655555 6778888
Q ss_pred eCCCCHHHHHHHHH
Q 005643 342 IGLPDAKQRVQIFD 355 (686)
Q Consensus 342 v~~Pd~~eR~~Il~ 355 (686)
|..-+..+-..||.
T Consensus 1204 frVsS~~DSrtILd 1217 (1355)
T PRK10263 1204 FTVSSKIDSRTILD 1217 (1355)
T ss_pred EEcCCHHHHHHhcC
Confidence 88888777777764
No 500
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.55 E-value=0.026 Score=55.57 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=22.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+....+.|.||+|+|||+|.+.+++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568999999999999999998853
Done!