Query 005643
Match_columns 686
No_of_seqs 602 out of 3938
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 03:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.2E-82 4.2E-87 710.9 47.5 443 165-642 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 8.7E-81 3E-85 699.7 44.1 460 145-648 9-474 (499)
3 4b4t_J 26S protease regulatory 100.0 4E-51 1.4E-55 444.5 28.0 246 163-417 140-391 (405)
4 4b4t_I 26S protease regulatory 100.0 5E-50 1.7E-54 437.0 28.3 246 163-417 174-425 (437)
5 4b4t_H 26S protease regulatory 100.0 3.1E-49 1.1E-53 434.6 27.4 246 163-417 201-452 (467)
6 4b4t_L 26S protease subunit RP 100.0 5.5E-49 1.9E-53 433.7 27.5 244 164-416 174-423 (437)
7 4b4t_M 26S protease regulatory 100.0 5.7E-49 2E-53 433.2 25.7 245 163-416 173-423 (434)
8 4b4t_K 26S protease regulatory 100.0 3.4E-48 1.2E-52 426.7 28.1 245 163-416 164-415 (428)
9 2di4_A Zinc protease, cell div 100.0 2.2E-47 7.4E-52 387.3 18.3 206 431-654 6-212 (238)
10 3cf2_A TER ATPase, transitiona 100.0 2.3E-43 7.9E-48 413.5 6.5 227 163-398 469-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 5.1E-41 1.7E-45 393.7 23.0 244 164-416 197-460 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 8.1E-37 2.8E-41 314.6 28.4 244 164-416 5-253 (257)
13 2x8a_A Nuclear valosin-contain 100.0 4.3E-37 1.5E-41 321.3 21.7 243 164-415 3-264 (274)
14 3cf0_A Transitional endoplasmi 100.0 2.2E-36 7.6E-41 319.7 21.0 243 164-415 8-281 (301)
15 2qz4_A Paraplegin; AAA+, SPG7, 100.0 8.2E-36 2.8E-40 306.4 21.5 243 166-417 1-251 (262)
16 3h4m_A Proteasome-activating n 100.0 1.1E-34 3.8E-39 302.4 28.5 245 164-417 10-260 (285)
17 1ixz_A ATP-dependent metallopr 100.0 1.1E-34 3.9E-39 298.0 26.6 240 164-412 9-253 (254)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.7E-35 3E-39 310.6 26.6 224 164-398 5-233 (322)
19 3eie_A Vacuolar protein sortin 100.0 8.6E-35 2.9E-39 310.2 20.4 225 164-399 11-239 (322)
20 3hu3_A Transitional endoplasmi 100.0 5.7E-34 2E-38 320.1 26.0 241 166-415 199-459 (489)
21 1iy2_A ATP-dependent metallopr 100.0 1.5E-33 5.1E-38 294.1 26.8 253 147-412 20-277 (278)
22 2qp9_X Vacuolar protein sortin 100.0 1.6E-33 5.5E-38 304.7 24.4 224 164-398 44-271 (355)
23 2r62_A Cell division protease 100.0 9.3E-36 3.2E-40 308.1 3.0 245 164-416 4-254 (268)
24 2zan_A Vacuolar protein sortin 100.0 2.4E-32 8.1E-37 304.1 21.3 224 164-398 127-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 2.1E-30 7.1E-35 280.5 25.1 243 164-416 77-335 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 2.2E-30 7.5E-35 271.7 21.8 242 164-414 14-271 (297)
27 1ypw_A Transitional endoplasmi 100.0 1.6E-32 5.5E-37 325.7 -2.1 227 164-399 470-702 (806)
28 3vfd_A Spastin; ATPase, microt 100.0 2.3E-29 7.8E-34 275.1 23.0 242 164-415 108-365 (389)
29 3t15_A Ribulose bisphosphate c 100.0 2E-30 6.8E-35 273.2 10.1 183 199-387 31-223 (293)
30 1ypw_A Transitional endoplasmi 99.9 5.3E-27 1.8E-31 278.4 23.8 228 164-400 197-427 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.8E-25 6.1E-30 249.5 0.7 203 164-390 30-262 (456)
32 3uk6_A RUVB-like 2; hexameric 99.9 4.4E-22 1.5E-26 214.5 18.8 220 165-415 38-330 (368)
33 3syl_A Protein CBBX; photosynt 99.9 8.9E-22 3.1E-26 207.0 16.8 225 169-410 28-281 (309)
34 3pfi_A Holliday junction ATP-d 99.9 1.6E-20 5.6E-25 200.1 22.1 223 165-414 23-253 (338)
35 1d2n_A N-ethylmaleimide-sensit 99.8 1.4E-19 4.6E-24 187.6 18.5 203 170-392 32-246 (272)
36 1hqc_A RUVB; extended AAA-ATPa 99.8 2.8E-19 9.6E-24 188.9 18.9 224 165-414 6-237 (324)
37 1ofh_A ATP-dependent HSL prote 99.8 1.4E-19 4.9E-24 189.4 16.3 241 171-414 15-298 (310)
38 3m6a_A ATP-dependent protease 99.8 2.6E-19 9E-24 203.8 11.2 233 166-414 76-340 (543)
39 2v1u_A Cell division control p 99.8 8.7E-18 3E-22 180.7 20.5 222 168-415 16-276 (387)
40 1g41_A Heat shock protein HSLU 99.8 1E-19 3.5E-24 200.8 5.0 169 171-356 15-190 (444)
41 2r44_A Uncharacterized protein 99.8 9.1E-18 3.1E-22 178.6 19.2 223 168-419 24-301 (331)
42 3hws_A ATP-dependent CLP prote 99.8 7.5E-18 2.6E-22 182.0 16.4 225 173-399 17-326 (363)
43 3u61_B DNA polymerase accessor 99.8 5.8E-18 2E-22 179.5 14.8 204 164-414 19-236 (324)
44 2chg_A Replication factor C sm 99.8 3.5E-17 1.2E-21 161.1 19.4 206 165-413 11-224 (226)
45 1g8p_A Magnesium-chelatase 38 99.7 1.4E-17 4.6E-22 177.7 17.4 228 165-420 18-327 (350)
46 3bos_A Putative DNA replicatio 99.7 1.9E-17 6.4E-22 166.1 16.8 210 165-413 22-241 (242)
47 1l8q_A Chromosomal replication 99.7 1.8E-17 6.1E-22 176.0 17.5 199 165-394 5-214 (324)
48 2z4s_A Chromosomal replication 99.7 1.2E-17 4.3E-22 185.3 16.9 221 165-415 99-332 (440)
49 3pvs_A Replication-associated 99.7 2.3E-17 7.9E-22 183.4 18.4 205 165-414 20-243 (447)
50 4fcw_A Chaperone protein CLPB; 99.7 2.2E-17 7.5E-22 173.4 14.9 210 171-395 17-278 (311)
51 1njg_A DNA polymerase III subu 99.7 2.3E-16 7.8E-21 157.0 20.4 203 165-412 17-248 (250)
52 2qby_B CDC6 homolog 3, cell di 99.7 5.2E-17 1.8E-21 175.3 16.7 214 168-416 17-271 (384)
53 1in4_A RUVB, holliday junction 99.7 6.7E-16 2.3E-20 165.1 22.7 222 167-415 21-250 (334)
54 2qby_A CDC6 homolog 1, cell di 99.7 4.3E-16 1.5E-20 167.1 20.2 222 167-416 16-273 (386)
55 1sxj_D Activator 1 41 kDa subu 99.7 2.7E-16 9.3E-21 167.7 17.5 208 164-413 30-261 (353)
56 1jbk_A CLPB protein; beta barr 99.7 3.8E-17 1.3E-21 157.1 9.3 157 167-354 18-194 (195)
57 1sxj_A Activator 1 95 kDa subu 99.7 1E-16 3.5E-21 181.4 14.2 222 164-414 32-273 (516)
58 1r6b_X CLPA protein; AAA+, N-t 99.7 6E-16 2.1E-20 182.8 20.9 220 167-416 182-434 (758)
59 1fnn_A CDC6P, cell division co 99.7 9.6E-16 3.3E-20 165.2 20.6 220 168-415 14-274 (389)
60 1um8_A ATP-dependent CLP prote 99.7 3.4E-16 1.2E-20 169.7 16.1 238 172-411 22-361 (376)
61 3pxi_A Negative regulator of g 99.7 2.3E-16 8E-21 186.3 14.7 205 170-392 490-721 (758)
62 1r6b_X CLPA protein; AAA+, N-t 99.7 3.8E-16 1.3E-20 184.5 15.9 170 171-359 458-667 (758)
63 3pxg_A Negative regulator of g 99.7 4.3E-16 1.5E-20 174.3 14.4 206 166-415 175-406 (468)
64 3te6_A Regulatory protein SIR3 99.6 5.3E-16 1.8E-20 164.6 12.8 137 202-360 43-213 (318)
65 2chq_A Replication factor C sm 99.6 9.9E-16 3.4E-20 160.6 14.4 206 164-412 10-223 (319)
66 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 6.8E-16 2.3E-20 173.4 11.9 213 172-413 23-283 (500)
67 1qvr_A CLPB protein; coiled co 99.6 1.9E-15 6.6E-20 180.8 16.3 202 166-398 165-395 (854)
68 2bjv_A PSP operon transcriptio 99.6 2.7E-15 9.1E-20 154.5 14.7 212 168-408 3-250 (265)
69 1sxj_B Activator 1 37 kDa subu 99.6 5.6E-15 1.9E-19 155.1 17.3 202 165-413 15-229 (323)
70 2p65_A Hypothetical protein PF 99.6 8.2E-16 2.8E-20 147.7 9.9 151 167-346 18-187 (187)
71 1iqp_A RFCS; clamp loader, ext 99.6 9.9E-15 3.4E-19 153.5 18.8 202 164-412 18-231 (327)
72 1jr3_A DNA polymerase III subu 99.6 1.7E-14 5.8E-19 154.9 20.4 203 165-412 10-241 (373)
73 3pxi_A Negative regulator of g 99.6 2.5E-15 8.4E-20 177.6 15.0 189 166-399 175-389 (758)
74 3f9v_A Minichromosome maintena 99.6 2E-16 6.8E-21 181.8 2.9 196 204-415 327-587 (595)
75 1qvr_A CLPB protein; coiled co 99.6 4.6E-15 1.6E-19 177.5 13.7 211 170-395 557-819 (854)
76 1ojl_A Transcriptional regulat 99.6 1.1E-14 3.9E-19 153.8 12.3 207 172-408 3-245 (304)
77 1sxj_C Activator 1 40 kDa subu 99.5 2.4E-14 8.1E-19 153.1 12.1 206 164-412 18-236 (340)
78 1sxj_E Activator 1 40 kDa subu 99.5 1.1E-13 3.6E-18 148.1 14.4 192 164-394 7-243 (354)
79 1w5s_A Origin recognition comp 99.4 3.3E-12 1.1E-16 138.7 20.8 228 168-415 19-293 (412)
80 1a5t_A Delta prime, HOLB; zinc 99.4 4.4E-12 1.5E-16 135.5 17.9 158 202-390 22-207 (334)
81 3k1j_A LON protease, ATP-depen 99.4 1.4E-12 4.9E-17 150.2 14.5 140 262-414 201-374 (604)
82 3co5_A Putative two-component 99.4 1.4E-13 4.7E-18 129.0 4.3 112 172-323 5-116 (143)
83 3n70_A Transport activator; si 99.4 9.3E-13 3.2E-17 123.5 9.5 112 172-323 2-116 (145)
84 3kw6_A 26S protease regulatory 99.3 2.8E-12 9.6E-17 107.9 9.6 74 343-416 1-74 (78)
85 2krk_A 26S protease regulatory 99.3 5.2E-12 1.8E-16 108.4 9.0 75 342-416 8-82 (86)
86 3cmw_A Protein RECA, recombina 99.2 9.5E-12 3.2E-16 155.4 10.7 150 164-323 1013-1218(1706)
87 4akg_A Glutathione S-transfera 99.2 4.6E-11 1.6E-15 155.1 16.8 146 203-359 1266-1432(2695)
88 2gno_A DNA polymerase III, gam 99.2 5.7E-11 1.9E-15 125.5 13.8 125 204-358 18-152 (305)
89 3vlf_B 26S protease regulatory 99.2 3.7E-11 1.3E-15 103.5 8.3 71 346-416 2-72 (88)
90 3ec2_A DNA replication protein 99.2 6E-11 2.1E-15 114.7 9.6 133 166-324 5-144 (180)
91 3aji_B S6C, proteasome (prosom 99.1 2.1E-10 7.1E-15 97.5 8.3 71 346-416 2-72 (83)
92 1ny5_A Transcriptional regulat 99.1 7.1E-10 2.4E-14 120.9 13.3 214 170-412 136-384 (387)
93 2w58_A DNAI, primosome compone 99.0 4.3E-10 1.5E-14 110.4 6.8 103 166-275 20-128 (202)
94 3f8t_A Predicted ATPase involv 99.0 8.8E-10 3E-14 121.4 9.6 215 173-415 215-483 (506)
95 2dzn_B 26S protease regulatory 98.9 2.4E-10 8E-15 97.1 2.8 69 348-416 1-69 (82)
96 2kjq_A DNAA-related protein; s 98.9 9.6E-09 3.3E-13 96.9 11.2 105 203-342 35-145 (149)
97 3dzd_A Transcriptional regulat 98.9 8.1E-09 2.8E-13 111.8 11.5 198 171-395 129-361 (368)
98 2fna_A Conserved hypothetical 98.8 1.8E-07 6.2E-12 98.7 21.2 185 168-390 10-252 (357)
99 2vhj_A Ntpase P4, P4; non- hyd 98.8 3E-09 1E-13 112.3 6.2 119 200-330 119-242 (331)
100 2qgz_A Helicase loader, putati 98.8 6.4E-09 2.2E-13 109.8 7.3 100 167-274 120-226 (308)
101 2qen_A Walker-type ATPase; unk 98.7 6.8E-07 2.3E-11 94.0 21.5 188 168-389 9-247 (350)
102 4akg_A Glutathione S-transfera 98.7 2.1E-07 7.2E-12 121.4 18.1 175 204-395 645-840 (2695)
103 1svm_A Large T antigen; AAA+ f 98.7 2.3E-08 8E-13 108.4 7.6 120 199-344 164-284 (377)
104 2r2a_A Uncharacterized protein 98.6 3.8E-08 1.3E-12 97.5 7.0 130 204-350 5-158 (199)
105 3cmu_A Protein RECA, recombina 98.4 3.8E-07 1.3E-11 115.6 9.4 105 200-304 1423-1554(2050)
106 1tue_A Replication protein E1; 98.4 3.8E-07 1.3E-11 90.3 7.1 120 201-345 55-179 (212)
107 1jr3_D DNA polymerase III, del 98.2 2E-05 6.9E-10 83.7 16.7 176 203-414 17-208 (343)
108 3vkg_A Dynein heavy chain, cyt 98.2 3E-06 1E-10 111.4 11.6 144 204-358 1304-1469(3245)
109 2c9o_A RUVB-like 1; hexameric 98.1 7.3E-06 2.5E-10 90.9 11.0 127 263-415 296-437 (456)
110 1u0j_A DNA replication protein 98.1 1.2E-05 3.9E-10 82.9 10.4 28 203-230 103-130 (267)
111 3vkg_A Dynein heavy chain, cyt 98.0 2.3E-05 7.8E-10 103.3 14.1 174 204-394 604-799 (3245)
112 1ye8_A Protein THEP1, hypothet 97.9 8.1E-05 2.8E-09 72.0 11.6 27 206-232 2-28 (178)
113 1n0w_A DNA repair protein RAD5 97.9 5.9E-05 2E-09 75.2 11.0 77 200-276 20-133 (243)
114 2cvh_A DNA repair and recombin 97.8 3.7E-05 1.3E-09 75.5 8.8 40 200-239 16-55 (220)
115 1xp8_A RECA protein, recombina 97.8 7.5E-05 2.6E-09 80.5 11.0 77 200-276 70-166 (366)
116 2ehv_A Hypothetical protein PH 97.7 0.00022 7.4E-09 71.3 12.8 128 200-343 26-206 (251)
117 2zr9_A Protein RECA, recombina 97.7 5.9E-05 2E-09 80.9 9.0 77 200-276 57-153 (349)
118 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00022 7.6E-09 70.1 12.2 39 200-238 19-60 (235)
119 2z43_A DNA repair and recombin 97.7 6.9E-05 2.4E-09 79.2 9.0 100 200-299 103-243 (324)
120 3hr8_A Protein RECA; alpha and 97.7 0.00014 4.9E-09 78.0 11.0 100 200-299 57-183 (356)
121 1u94_A RECA protein, recombina 97.6 0.00012 4.1E-09 78.7 9.0 77 200-276 59-155 (356)
122 3cmu_A Protein RECA, recombina 97.6 9.2E-05 3.1E-09 94.2 8.9 77 200-276 1077-1173(2050)
123 1z6t_A APAF-1, apoptotic prote 97.6 0.0011 3.9E-08 75.2 17.2 172 169-387 122-327 (591)
124 4a74_A DNA repair and recombin 97.6 0.00033 1.1E-08 69.0 11.2 40 200-239 21-69 (231)
125 1g41_A Heat shock protein HSLU 97.5 0.00071 2.4E-08 74.6 13.9 100 251-355 241-346 (444)
126 1v5w_A DMC1, meiotic recombina 97.5 0.00026 8.8E-09 75.6 10.1 100 200-299 118-259 (343)
127 2r8r_A Sensor protein; KDPD, P 97.4 0.0016 5.6E-08 65.3 14.2 161 205-396 7-209 (228)
128 2dr3_A UPF0273 protein PH0284; 97.4 0.00069 2.4E-08 67.4 11.5 40 200-239 19-61 (247)
129 1qhx_A CPT, protein (chloramph 97.4 9.2E-05 3.1E-09 70.4 4.2 37 204-240 3-39 (178)
130 2zts_A Putative uncharacterize 97.4 0.0008 2.7E-08 67.0 11.1 40 200-239 26-69 (251)
131 3io5_A Recombination and repai 97.4 0.00035 1.2E-08 73.6 8.5 76 201-277 26-126 (333)
132 2i1q_A DNA repair and recombin 97.3 0.0003 1E-08 74.1 7.4 100 200-299 94-244 (322)
133 3trf_A Shikimate kinase, SK; a 97.3 0.00013 4.5E-09 69.8 4.0 32 204-235 5-36 (185)
134 3lda_A DNA repair protein RAD5 97.3 0.00084 2.9E-08 73.2 10.5 99 200-298 174-312 (400)
135 1pzn_A RAD51, DNA repair and r 97.3 0.0007 2.4E-08 72.4 9.7 40 200-239 127-175 (349)
136 2p5t_B PEZT; postsegregational 97.3 0.00058 2E-08 69.4 8.5 59 178-240 10-68 (253)
137 3sfz_A APAF-1, apoptotic pepti 97.2 0.0032 1.1E-07 77.1 16.6 172 169-385 122-325 (1249)
138 2orw_A Thymidine kinase; TMTK, 97.2 0.00012 4.2E-09 71.0 3.0 69 205-274 4-88 (184)
139 3upu_A ATP-dependent DNA helic 97.2 0.00038 1.3E-08 77.1 7.1 53 164-228 17-69 (459)
140 2rhm_A Putative kinase; P-loop 97.2 0.00027 9.1E-09 67.9 5.0 33 202-234 3-35 (193)
141 1nlf_A Regulatory protein REPA 97.2 0.0011 3.9E-08 68.0 9.8 40 200-239 26-78 (279)
142 3vaa_A Shikimate kinase, SK; s 97.2 0.00021 7.3E-09 69.6 4.0 33 203-235 24-56 (199)
143 1gvn_B Zeta; postsegregational 97.1 0.00032 1.1E-08 73.0 4.9 60 178-241 11-70 (287)
144 2iut_A DNA translocase FTSK; n 97.0 0.0066 2.3E-07 68.7 15.0 74 264-355 345-420 (574)
145 2r6a_A DNAB helicase, replicat 97.0 0.0014 4.8E-08 72.5 9.3 39 200-238 199-241 (454)
146 2iyv_A Shikimate kinase, SK; t 97.0 0.00031 1.1E-08 67.2 3.5 31 205-235 3-33 (184)
147 3kb2_A SPBC2 prophage-derived 97.0 0.0004 1.4E-08 65.2 4.2 31 206-236 3-33 (173)
148 3iij_A Coilin-interacting nucl 97.0 0.00035 1.2E-08 66.7 3.5 33 203-235 10-42 (180)
149 1zp6_A Hypothetical protein AT 97.0 0.00038 1.3E-08 66.8 3.8 40 201-240 6-45 (191)
150 2cdn_A Adenylate kinase; phosp 97.0 0.00049 1.7E-08 66.9 4.4 34 202-235 18-51 (201)
151 2a5y_B CED-4; apoptosis; HET: 97.0 0.011 3.8E-07 66.7 16.2 144 203-379 151-329 (549)
152 1via_A Shikimate kinase; struc 96.9 0.00049 1.7E-08 65.4 4.0 29 206-234 6-34 (175)
153 1y63_A LMAJ004144AAA protein; 96.9 0.00045 1.5E-08 66.5 3.6 33 203-235 9-42 (184)
154 1zuh_A Shikimate kinase; alpha 96.9 0.00049 1.7E-08 64.9 3.8 32 204-235 7-38 (168)
155 1kag_A SKI, shikimate kinase I 96.9 0.00053 1.8E-08 64.7 4.0 30 204-233 4-33 (173)
156 1tev_A UMP-CMP kinase; ploop, 96.9 0.00047 1.6E-08 66.0 3.5 31 204-234 3-33 (196)
157 1qf9_A UMP/CMP kinase, protein 96.9 0.00055 1.9E-08 65.4 3.8 33 203-235 5-37 (194)
158 2b8t_A Thymidine kinase; deoxy 96.9 0.0018 6.3E-08 64.8 7.7 70 205-274 13-101 (223)
159 2ze6_A Isopentenyl transferase 96.8 0.00067 2.3E-08 69.1 4.2 32 206-237 3-34 (253)
160 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0022 7.7E-08 65.3 8.1 37 204-240 4-43 (260)
161 1ly1_A Polynucleotide kinase; 96.8 0.00055 1.9E-08 64.7 3.3 30 204-233 2-32 (181)
162 2c95_A Adenylate kinase 1; tra 96.8 0.00062 2.1E-08 65.4 3.6 32 204-235 9-40 (196)
163 3t61_A Gluconokinase; PSI-biol 96.8 0.00076 2.6E-08 65.6 4.2 31 204-234 18-48 (202)
164 3be4_A Adenylate kinase; malar 96.8 0.00063 2.1E-08 67.3 3.6 32 204-235 5-36 (217)
165 3lw7_A Adenylate kinase relate 96.8 0.00056 1.9E-08 63.9 3.1 29 206-235 3-31 (179)
166 2ius_A DNA translocase FTSK; n 96.8 0.01 3.4E-07 66.6 13.5 75 263-355 297-374 (512)
167 1zd8_A GTP:AMP phosphotransfer 96.8 0.00061 2.1E-08 67.7 3.3 34 202-235 5-38 (227)
168 2q6t_A DNAB replication FORK h 96.8 0.0032 1.1E-07 69.4 9.4 39 200-238 196-238 (444)
169 1aky_A Adenylate kinase; ATP:A 96.7 0.00093 3.2E-08 66.0 4.5 33 203-235 3-35 (220)
170 3bh0_A DNAB-like replicative h 96.7 0.004 1.4E-07 65.4 9.6 39 200-238 64-105 (315)
171 3cm0_A Adenylate kinase; ATP-b 96.7 0.00083 2.8E-08 64.1 3.9 31 204-234 4-34 (186)
172 3umf_A Adenylate kinase; rossm 96.7 0.00092 3.1E-08 66.8 4.3 38 202-241 27-64 (217)
173 2vli_A Antibiotic resistance p 96.7 0.00071 2.4E-08 64.3 3.4 30 204-233 5-34 (183)
174 1e6c_A Shikimate kinase; phosp 96.7 0.00068 2.3E-08 63.8 3.2 30 205-234 3-32 (173)
175 2bwj_A Adenylate kinase 5; pho 96.7 0.00073 2.5E-08 65.1 3.4 32 203-234 11-42 (199)
176 3dm5_A SRP54, signal recogniti 96.7 0.013 4.3E-07 64.6 13.7 70 203-272 99-192 (443)
177 3dl0_A Adenylate kinase; phosp 96.7 0.00078 2.7E-08 66.2 3.5 30 206-235 2-31 (216)
178 3tlx_A Adenylate kinase 2; str 96.7 0.00084 2.9E-08 67.8 3.7 33 203-235 28-60 (243)
179 2pez_A Bifunctional 3'-phospho 96.7 0.0015 5.1E-08 62.2 5.2 36 203-238 4-42 (179)
180 3fb4_A Adenylate kinase; psych 96.7 0.00087 3E-08 65.8 3.6 30 206-235 2-31 (216)
181 1kht_A Adenylate kinase; phosp 96.7 0.0007 2.4E-08 64.6 2.9 26 204-229 3-28 (192)
182 1ukz_A Uridylate kinase; trans 96.7 0.00092 3.2E-08 64.9 3.6 33 203-235 14-46 (203)
183 1zak_A Adenylate kinase; ATP:A 96.6 0.00068 2.3E-08 67.1 2.6 32 203-234 4-35 (222)
184 2pt5_A Shikimate kinase, SK; a 96.6 0.00098 3.3E-08 62.5 3.6 29 206-234 2-30 (168)
185 1ak2_A Adenylate kinase isoenz 96.6 0.0014 4.8E-08 65.5 4.6 32 204-235 16-47 (233)
186 1g5t_A COB(I)alamin adenosyltr 96.6 0.011 3.7E-07 58.0 10.7 114 206-342 30-177 (196)
187 2fz4_A DNA repair protein RAD2 96.6 0.003 1E-07 63.5 6.9 33 206-238 110-142 (237)
188 1knq_A Gluconate kinase; ALFA/ 96.6 0.0016 5.5E-08 61.6 4.6 35 204-240 8-42 (175)
189 4eun_A Thermoresistant glucoki 96.5 0.0017 6E-08 63.1 4.5 36 203-240 28-63 (200)
190 3cmw_A Protein RECA, recombina 96.5 0.0061 2.1E-07 77.0 10.4 100 204-303 1431-1557(1706)
191 3crm_A TRNA delta(2)-isopenten 96.5 0.0017 5.8E-08 68.7 4.4 38 203-240 4-41 (323)
192 1e4v_A Adenylate kinase; trans 96.4 0.0015 5.2E-08 64.2 3.5 30 206-235 2-31 (214)
193 3sr0_A Adenylate kinase; phosp 96.4 0.0018 6.3E-08 63.9 4.1 34 206-241 2-35 (206)
194 2i3b_A HCR-ntpase, human cance 96.4 0.001 3.4E-08 64.9 2.1 23 206-228 3-25 (189)
195 2pbr_A DTMP kinase, thymidylat 96.4 0.0026 8.8E-08 60.8 4.8 31 206-236 2-35 (195)
196 1vma_A Cell division protein F 96.4 0.012 4.2E-07 61.6 10.4 72 201-272 101-196 (306)
197 3kl4_A SRP54, signal recogniti 96.4 0.021 7.3E-07 62.6 12.6 70 203-272 96-189 (433)
198 3e1s_A Exodeoxyribonuclease V, 96.3 0.0022 7.5E-08 73.1 4.5 32 205-236 205-239 (574)
199 2wwf_A Thymidilate kinase, put 96.3 0.0024 8.4E-08 62.0 4.1 33 203-235 9-41 (212)
200 1nn5_A Similar to deoxythymidy 96.3 0.0025 8.6E-08 62.0 4.1 31 203-233 8-38 (215)
201 1cke_A CK, MSSA, protein (cyti 96.3 0.0028 9.5E-08 62.4 4.4 30 205-234 6-35 (227)
202 2v54_A DTMP kinase, thymidylat 96.2 0.0028 9.5E-08 61.3 4.2 33 204-236 4-37 (204)
203 3uie_A Adenylyl-sulfate kinase 96.2 0.0031 1.1E-07 61.3 4.5 36 203-238 24-62 (200)
204 3jvv_A Twitching mobility prot 96.2 0.0043 1.5E-07 66.5 5.9 68 205-272 124-206 (356)
205 2if2_A Dephospho-COA kinase; a 96.2 0.0019 6.6E-08 62.6 2.9 30 206-236 3-32 (204)
206 2jaq_A Deoxyguanosine kinase; 96.2 0.0027 9.2E-08 61.1 3.8 29 206-234 2-30 (205)
207 3bgw_A DNAB-like replicative h 96.2 0.012 3.9E-07 65.0 9.3 40 200-239 193-235 (444)
208 2xb4_A Adenylate kinase; ATP-b 96.2 0.0029 9.9E-08 62.8 4.0 29 206-234 2-30 (223)
209 1nks_A Adenylate kinase; therm 96.2 0.0018 6.3E-08 61.6 2.5 31 206-236 3-36 (194)
210 1tf7_A KAIC; homohexamer, hexa 96.1 0.034 1.2E-06 62.4 13.1 96 200-297 277-404 (525)
211 2z0h_A DTMP kinase, thymidylat 96.1 0.0041 1.4E-07 59.6 4.7 30 207-236 3-35 (197)
212 3ake_A Cytidylate kinase; CMP 96.1 0.0043 1.5E-07 60.0 4.9 30 206-235 4-33 (208)
213 2ewv_A Twitching motility prot 96.1 0.006 2E-07 65.7 6.4 74 199-272 131-219 (372)
214 2bbw_A Adenylate kinase 4, AK4 96.1 0.004 1.4E-07 62.6 4.7 30 204-233 27-56 (246)
215 1q57_A DNA primase/helicase; d 96.1 0.012 4.1E-07 65.7 9.0 40 200-239 238-281 (503)
216 1uf9_A TT1252 protein; P-loop, 96.1 0.003 1E-07 60.8 3.6 31 203-234 7-37 (203)
217 4gp7_A Metallophosphoesterase; 96.1 0.0085 2.9E-07 56.9 6.6 22 202-223 7-28 (171)
218 1uj2_A Uridine-cytidine kinase 96.1 0.0046 1.6E-07 62.5 5.0 40 203-242 21-68 (252)
219 2eyu_A Twitching motility prot 96.0 0.0062 2.1E-07 62.3 5.9 69 203-272 24-108 (261)
220 1tf7_A KAIC; homohexamer, hexa 96.0 0.038 1.3E-06 62.1 12.6 112 201-326 36-188 (525)
221 1jjv_A Dephospho-COA kinase; P 96.0 0.0038 1.3E-07 60.7 3.9 29 205-234 3-31 (206)
222 3r20_A Cytidylate kinase; stru 96.0 0.0046 1.6E-07 62.3 4.4 30 204-233 9-38 (233)
223 2plr_A DTMP kinase, probable t 96.0 0.0065 2.2E-07 58.8 5.4 28 204-231 4-31 (213)
224 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0037 1.3E-07 66.8 3.4 30 205-234 25-54 (359)
225 2grj_A Dephospho-COA kinase; T 95.9 0.0039 1.3E-07 60.8 3.2 31 205-235 13-43 (192)
226 3nwj_A ATSK2; P loop, shikimat 95.9 0.0044 1.5E-07 63.1 3.7 32 204-235 48-79 (250)
227 3foz_A TRNA delta(2)-isopenten 95.8 0.0053 1.8E-07 64.4 4.1 39 203-241 9-47 (316)
228 3c8u_A Fructokinase; YP_612366 95.8 0.0074 2.5E-07 59.0 4.8 42 181-229 6-47 (208)
229 1ltq_A Polynucleotide kinase; 95.8 0.0036 1.2E-07 64.6 2.6 30 204-233 2-32 (301)
230 3a8t_A Adenylate isopentenyltr 95.7 0.0049 1.7E-07 65.5 3.4 37 204-240 40-76 (339)
231 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0044 1.5E-07 65.7 2.9 71 203-273 170-251 (330)
232 2yvu_A Probable adenylyl-sulfa 95.6 0.0082 2.8E-07 57.4 4.5 34 203-236 12-48 (186)
233 4a1f_A DNAB helicase, replicat 95.6 0.046 1.6E-06 58.0 10.6 39 200-238 42-83 (338)
234 1rz3_A Hypothetical protein rb 95.6 0.02 6.9E-07 55.6 7.3 38 202-239 20-60 (201)
235 2qt1_A Nicotinamide riboside k 95.6 0.0047 1.6E-07 60.2 2.6 32 203-234 20-52 (207)
236 1vht_A Dephospho-COA kinase; s 95.6 0.0078 2.7E-07 59.0 4.2 31 204-235 4-34 (218)
237 1q3t_A Cytidylate kinase; nucl 95.6 0.009 3.1E-07 59.6 4.6 33 202-234 14-46 (236)
238 2h92_A Cytidylate kinase; ross 95.6 0.0079 2.7E-07 58.9 4.2 31 204-234 3-33 (219)
239 1m7g_A Adenylylsulfate kinase; 95.6 0.0068 2.3E-07 59.4 3.6 37 203-239 24-64 (211)
240 2px0_A Flagellar biosynthesis 95.5 0.048 1.6E-06 56.7 10.2 38 203-240 104-145 (296)
241 2xxa_A Signal recognition part 95.5 0.061 2.1E-06 59.0 11.4 70 202-271 98-192 (433)
242 3zvl_A Bifunctional polynucleo 95.5 0.01 3.5E-07 64.8 5.1 32 203-234 257-288 (416)
243 3tau_A Guanylate kinase, GMP k 95.5 0.0067 2.3E-07 59.4 3.3 27 203-229 7-33 (208)
244 2f6r_A COA synthase, bifunctio 95.5 0.0067 2.3E-07 62.6 3.4 31 204-235 75-105 (281)
245 4e22_A Cytidylate kinase; P-lo 95.4 0.0099 3.4E-07 60.2 4.4 30 204-233 27-56 (252)
246 2qor_A Guanylate kinase; phosp 95.4 0.0086 2.9E-07 58.3 3.7 28 202-229 10-37 (204)
247 3b6e_A Interferon-induced heli 95.3 0.055 1.9E-06 52.1 9.3 23 205-227 49-71 (216)
248 2j37_W Signal recognition part 95.3 0.046 1.6E-06 61.1 9.6 37 202-238 99-138 (504)
249 3d3q_A TRNA delta(2)-isopenten 95.3 0.01 3.4E-07 63.2 3.9 33 205-237 8-40 (340)
250 1kgd_A CASK, peripheral plasma 95.3 0.011 3.8E-07 56.4 3.9 26 204-229 5-30 (180)
251 1w36_D RECD, exodeoxyribonucle 95.2 0.026 9E-07 64.7 7.7 23 205-227 165-187 (608)
252 3exa_A TRNA delta(2)-isopenten 95.2 0.0099 3.4E-07 62.5 3.6 37 204-240 3-39 (322)
253 2j41_A Guanylate kinase; GMP, 95.2 0.012 4E-07 56.9 3.8 26 203-228 5-30 (207)
254 1w4r_A Thymidine kinase; type 95.1 0.022 7.6E-07 55.7 5.5 69 204-274 20-103 (195)
255 3fdi_A Uncharacterized protein 95.0 0.015 5E-07 57.0 4.1 30 205-234 7-36 (201)
256 1zu4_A FTSY; GTPase, signal re 95.0 0.082 2.8E-06 55.6 10.1 38 201-238 102-142 (320)
257 2qmh_A HPR kinase/phosphorylas 95.0 0.0088 3E-07 58.8 2.4 32 204-236 34-65 (205)
258 2bdt_A BH3686; alpha-beta prot 95.0 0.015 5E-07 55.7 3.9 25 205-229 3-27 (189)
259 3asz_A Uridine kinase; cytidin 95.0 0.013 4.4E-07 57.0 3.5 31 203-233 5-37 (211)
260 2gxq_A Heat resistant RNA depe 95.0 0.07 2.4E-06 51.2 8.7 17 205-221 39-55 (207)
261 3tr0_A Guanylate kinase, GMP k 94.9 0.021 7.3E-07 54.9 4.9 33 204-238 7-39 (205)
262 1j8m_F SRP54, signal recogniti 94.9 0.087 3E-06 54.8 9.9 36 204-239 98-136 (297)
263 1cr0_A DNA primase/helicase; R 94.8 0.027 9.2E-07 58.0 5.7 39 200-238 31-73 (296)
264 3eph_A TRNA isopentenyltransfe 94.8 0.016 5.4E-07 63.0 3.8 35 204-238 2-36 (409)
265 3p32_A Probable GTPase RV1496/ 94.7 0.12 4E-06 55.0 10.5 34 203-236 78-114 (355)
266 2yhs_A FTSY, cell division pro 94.7 0.1 3.4E-06 58.1 10.1 28 201-228 290-317 (503)
267 3nh6_A ATP-binding cassette SU 94.6 0.072 2.5E-06 55.7 8.2 28 201-228 77-104 (306)
268 1ex7_A Guanylate kinase; subst 94.6 0.024 8.3E-07 55.0 4.2 26 205-230 2-27 (186)
269 1x6v_B Bifunctional 3'-phospho 94.5 0.028 9.6E-07 64.5 5.4 37 203-239 51-90 (630)
270 1c9k_A COBU, adenosylcobinamid 94.5 0.021 7.3E-07 55.1 3.7 32 207-239 2-33 (180)
271 3a00_A Guanylate kinase, GMP k 94.5 0.019 6.6E-07 55.0 3.4 24 205-228 2-25 (186)
272 2lna_A AFG3-like protein 2; st 94.4 0.046 1.6E-06 47.5 5.3 57 35-92 15-76 (99)
273 2oap_1 GSPE-2, type II secreti 94.4 0.015 5.2E-07 65.3 2.7 70 203-272 259-343 (511)
274 3gmt_A Adenylate kinase; ssgci 94.3 0.027 9.2E-07 56.6 4.0 29 206-234 10-38 (230)
275 1odf_A YGR205W, hypothetical 3 94.1 0.046 1.6E-06 56.7 5.4 28 202-229 29-56 (290)
276 1lvg_A Guanylate kinase, GMP k 94.1 0.027 9.2E-07 54.7 3.4 26 204-229 4-29 (198)
277 4b3f_X DNA-binding protein smu 94.0 0.084 2.9E-06 60.8 8.0 33 206-238 207-242 (646)
278 2jeo_A Uridine-cytidine kinase 94.0 0.028 9.5E-07 56.4 3.5 29 203-231 24-52 (245)
279 1vec_A ATP-dependent RNA helic 94.0 0.23 7.8E-06 47.5 9.9 18 205-222 41-58 (206)
280 3e70_C DPA, signal recognition 94.0 0.23 7.7E-06 52.4 10.6 27 202-228 127-153 (328)
281 1ls1_A Signal recognition part 94.0 0.13 4.5E-06 53.3 8.7 70 203-272 97-190 (295)
282 2pl3_A Probable ATP-dependent 93.9 0.17 5.8E-06 49.8 9.0 53 167-221 24-79 (236)
283 1htw_A HI0065; nucleotide-bind 93.9 0.042 1.5E-06 51.7 4.3 27 202-228 31-57 (158)
284 1hv8_A Putative ATP-dependent 93.9 0.27 9.4E-06 51.0 10.9 33 205-237 45-82 (367)
285 3hdt_A Putative kinase; struct 93.8 0.034 1.2E-06 55.5 3.7 30 205-234 15-44 (223)
286 4a82_A Cystic fibrosis transme 93.8 0.17 5.9E-06 57.4 9.9 28 201-228 364-391 (578)
287 4f4c_A Multidrug resistance pr 93.8 0.21 7.1E-06 62.3 11.4 29 201-229 441-469 (1321)
288 3qf4_B Uncharacterized ABC tra 93.8 0.2 6.9E-06 57.1 10.4 28 201-228 378-405 (598)
289 3b9q_A Chloroplast SRP recepto 93.7 0.063 2.2E-06 56.0 5.7 28 201-228 97-124 (302)
290 3thx_B DNA mismatch repair pro 93.7 0.2 6.8E-06 60.0 10.6 25 202-226 671-695 (918)
291 1gtv_A TMK, thymidylate kinase 93.7 0.018 6.1E-07 55.9 1.3 24 206-229 2-25 (214)
292 1znw_A Guanylate kinase, GMP k 93.7 0.039 1.3E-06 53.8 3.7 27 203-229 19-45 (207)
293 3ney_A 55 kDa erythrocyte memb 93.7 0.041 1.4E-06 53.9 3.8 27 203-229 18-44 (197)
294 1vt4_I APAF-1 related killer D 93.6 0.19 6.5E-06 60.7 10.1 43 174-227 131-173 (1221)
295 3lnc_A Guanylate kinase, GMP k 93.6 0.022 7.4E-07 56.5 1.8 26 203-228 26-52 (231)
296 2axn_A 6-phosphofructo-2-kinas 93.6 0.043 1.5E-06 61.7 4.4 29 203-231 34-62 (520)
297 2gza_A Type IV secretion syste 93.6 0.038 1.3E-06 59.1 3.8 71 202-272 173-262 (361)
298 1z6g_A Guanylate kinase; struc 93.6 0.038 1.3E-06 54.6 3.4 26 203-228 22-47 (218)
299 2ffh_A Protein (FFH); SRP54, s 93.6 0.28 9.6E-06 53.6 10.7 36 203-238 97-135 (425)
300 1a7j_A Phosphoribulokinase; tr 93.5 0.031 1.1E-06 58.0 2.9 38 204-241 5-45 (290)
301 1xx6_A Thymidine kinase; NESG, 93.5 0.039 1.3E-06 53.7 3.4 69 205-274 9-93 (191)
302 2v9p_A Replication protein E1; 93.5 0.045 1.5E-06 57.3 4.0 29 200-228 122-150 (305)
303 3iuy_A Probable ATP-dependent 93.4 0.14 4.8E-06 50.2 7.4 56 164-221 15-74 (228)
304 2og2_A Putative signal recogni 93.4 0.077 2.6E-06 56.8 5.8 28 201-228 154-181 (359)
305 4eaq_A DTMP kinase, thymidylat 93.4 0.052 1.8E-06 54.1 4.2 32 203-234 25-58 (229)
306 3thx_A DNA mismatch repair pro 93.3 0.28 9.7E-06 58.8 11.0 23 204-226 662-684 (934)
307 2j9r_A Thymidine kinase; TK1, 93.1 0.15 5.2E-06 50.5 7.0 67 206-274 30-113 (214)
308 3fe2_A Probable ATP-dependent 93.1 0.15 5.3E-06 50.5 7.1 56 165-222 26-84 (242)
309 1s96_A Guanylate kinase, GMP k 93.1 0.057 2E-06 53.6 3.8 28 202-229 14-41 (219)
310 1m8p_A Sulfate adenylyltransfe 93.0 0.063 2.2E-06 61.1 4.6 35 203-237 395-433 (573)
311 3tqf_A HPR(Ser) kinase; transf 93.0 0.066 2.3E-06 51.4 4.0 29 204-233 16-44 (181)
312 3qf4_A ABC transporter, ATP-bi 93.0 0.24 8.3E-06 56.3 9.4 28 201-228 366-393 (587)
313 1sq5_A Pantothenate kinase; P- 92.9 0.054 1.8E-06 56.5 3.4 27 203-229 79-105 (308)
314 3cr8_A Sulfate adenylyltranfer 92.8 0.11 3.8E-06 58.7 6.3 38 203-240 368-409 (552)
315 3b60_A Lipid A export ATP-bind 92.8 0.4 1.4E-05 54.4 11.0 27 202-228 367-393 (582)
316 4i1u_A Dephospho-COA kinase; s 92.7 0.065 2.2E-06 53.0 3.7 31 205-236 10-40 (210)
317 2ocp_A DGK, deoxyguanosine kin 92.7 0.071 2.4E-06 53.1 4.0 26 204-229 2-27 (241)
318 1np6_A Molybdopterin-guanine d 92.4 0.084 2.9E-06 50.5 3.9 26 203-228 5-30 (174)
319 3tqc_A Pantothenate kinase; bi 92.4 0.13 4.6E-06 54.0 5.8 28 202-229 90-117 (321)
320 3aez_A Pantothenate kinase; tr 92.4 0.081 2.8E-06 55.4 4.1 27 202-228 88-114 (312)
321 1p5z_B DCK, deoxycytidine kina 92.3 0.035 1.2E-06 56.3 1.1 26 203-228 23-48 (263)
322 1wb9_A DNA mismatch repair pro 92.3 0.7 2.4E-05 54.5 12.3 25 203-227 606-630 (800)
323 1g8f_A Sulfate adenylyltransfe 92.3 0.16 5.4E-06 56.9 6.4 27 204-230 395-421 (511)
324 2qm8_A GTPase/ATPase; G protei 92.2 0.27 9.3E-06 51.9 8.0 26 203-228 54-79 (337)
325 1p9r_A General secretion pathw 92.2 0.13 4.6E-06 56.0 5.7 25 205-229 168-192 (418)
326 1bif_A 6-phosphofructo-2-kinas 92.2 0.056 1.9E-06 59.8 2.6 30 203-232 38-67 (469)
327 2xau_A PRE-mRNA-splicing facto 92.1 0.18 6.3E-06 59.3 7.0 24 204-227 109-132 (773)
328 2v3c_C SRP54, signal recogniti 92.1 0.13 4.5E-06 56.4 5.4 37 203-239 98-137 (432)
329 1rj9_A FTSY, signal recognitio 91.8 0.1 3.5E-06 54.5 4.0 26 203-228 101-126 (304)
330 3def_A T7I23.11 protein; chlor 91.6 0.57 1.9E-05 47.2 9.3 25 204-228 36-60 (262)
331 2p67_A LAO/AO transport system 91.6 0.41 1.4E-05 50.5 8.5 26 203-228 55-80 (341)
332 1xjc_A MOBB protein homolog; s 91.6 0.11 3.9E-06 49.5 3.8 33 204-236 4-39 (169)
333 3lxx_A GTPase IMAP family memb 91.5 0.5 1.7E-05 46.7 8.6 24 204-227 29-52 (239)
334 2j0s_A ATP-dependent RNA helic 91.4 0.54 1.8E-05 50.0 9.4 57 166-224 35-94 (410)
335 2orv_A Thymidine kinase; TP4A 91.4 1 3.4E-05 45.1 10.5 67 205-274 20-102 (234)
336 4edh_A DTMP kinase, thymidylat 91.3 0.2 6.7E-06 49.5 5.2 32 204-235 6-40 (213)
337 2pcj_A ABC transporter, lipopr 91.3 0.074 2.5E-06 52.9 2.1 26 203-228 29-54 (224)
338 3tif_A Uncharacterized ABC tra 91.2 0.083 2.8E-06 52.9 2.5 26 203-228 30-55 (235)
339 3b85_A Phosphate starvation-in 91.2 0.081 2.8E-06 52.1 2.4 24 204-227 22-45 (208)
340 1sky_E F1-ATPase, F1-ATP synth 91.2 0.39 1.3E-05 53.1 8.0 23 206-228 153-175 (473)
341 2cbz_A Multidrug resistance-as 91.2 0.084 2.9E-06 52.9 2.5 27 202-228 29-55 (237)
342 3kta_A Chromosome segregation 91.2 0.13 4.6E-06 48.4 3.8 24 206-229 28-51 (182)
343 2onk_A Molybdate/tungstate ABC 91.1 0.098 3.3E-06 52.7 2.9 27 201-228 22-48 (240)
344 2gk6_A Regulator of nonsense t 91.1 0.19 6.6E-06 57.6 5.7 31 206-236 197-231 (624)
345 2ged_A SR-beta, signal recogni 91.0 0.26 8.8E-06 46.4 5.6 27 202-228 46-72 (193)
346 3oiy_A Reverse gyrase helicase 90.9 0.2 6.7E-06 53.8 5.3 21 204-224 36-56 (414)
347 3lv8_A DTMP kinase, thymidylat 90.9 0.14 4.8E-06 51.5 3.7 29 203-231 26-57 (236)
348 2zj8_A DNA helicase, putative 90.9 0.52 1.8E-05 54.7 9.2 19 203-221 38-56 (720)
349 2www_A Methylmalonic aciduria 90.8 0.3 1E-05 51.8 6.5 25 204-228 74-98 (349)
350 4f4c_A Multidrug resistance pr 90.7 0.51 1.7E-05 58.9 9.2 26 203-228 1104-1129(1321)
351 1mv5_A LMRA, multidrug resista 90.6 0.1 3.4E-06 52.5 2.4 27 202-228 26-52 (243)
352 2f9l_A RAB11B, member RAS onco 90.6 0.13 4.6E-06 49.1 3.2 23 205-227 6-28 (199)
353 1b0u_A Histidine permease; ABC 90.6 0.1 3.5E-06 53.2 2.5 26 203-228 31-56 (262)
354 1oix_A RAS-related protein RAB 90.6 0.13 4.5E-06 49.0 3.1 24 205-228 30-53 (191)
355 3eiq_A Eukaryotic initiation f 90.5 0.44 1.5E-05 50.5 7.6 56 166-223 38-96 (414)
356 3v9p_A DTMP kinase, thymidylat 90.5 0.21 7.3E-06 49.8 4.6 33 204-236 25-64 (227)
357 1lw7_A Transcriptional regulat 90.4 0.18 6E-06 53.7 4.2 27 204-230 170-196 (365)
358 1g6h_A High-affinity branched- 90.4 0.1 3.5E-06 52.9 2.3 26 203-228 32-57 (257)
359 3vkw_A Replicase large subunit 90.4 0.22 7.5E-06 54.7 5.0 24 203-226 160-183 (446)
360 3tmk_A Thymidylate kinase; pho 90.4 0.45 1.5E-05 47.1 6.8 32 204-235 5-36 (216)
361 2d2e_A SUFC protein; ABC-ATPas 90.4 0.12 4.2E-06 52.2 2.8 25 203-227 28-52 (250)
362 2zu0_C Probable ATP-dependent 90.3 0.13 4.4E-06 52.6 3.0 26 202-227 44-69 (267)
363 2va8_A SSO2462, SKI2-type heli 90.3 0.46 1.6E-05 55.1 8.0 22 202-223 44-65 (715)
364 2pze_A Cystic fibrosis transme 90.3 0.11 3.7E-06 51.9 2.2 27 202-228 32-58 (229)
365 2ghi_A Transport protein; mult 90.2 0.11 3.9E-06 52.7 2.5 27 202-228 44-70 (260)
366 3sop_A Neuronal-specific septi 90.2 0.14 4.9E-06 52.3 3.3 23 206-228 4-26 (270)
367 1sgw_A Putative ABC transporte 90.2 0.1 3.4E-06 51.7 2.0 26 203-228 34-59 (214)
368 2dyk_A GTP-binding protein; GT 90.2 0.17 5.9E-06 45.8 3.4 22 206-227 3-24 (161)
369 1z2a_A RAS-related protein RAB 90.2 0.17 5.7E-06 46.1 3.4 24 204-227 5-28 (168)
370 2ff7_A Alpha-hemolysin translo 90.1 0.11 3.8E-06 52.4 2.3 26 203-228 34-59 (247)
371 2olj_A Amino acid ABC transpor 90.1 0.12 4E-06 52.8 2.5 26 203-228 49-74 (263)
372 1ji0_A ABC transporter; ATP bi 90.1 0.11 3.9E-06 52.1 2.3 26 203-228 31-56 (240)
373 2ixe_A Antigen peptide transpo 90.1 0.12 4.1E-06 52.9 2.5 27 202-228 43-69 (271)
374 1nrj_B SR-beta, signal recogni 90.0 0.19 6.5E-06 48.5 3.8 25 204-228 12-36 (218)
375 3gfo_A Cobalt import ATP-bindi 89.9 0.12 4E-06 53.3 2.2 26 203-228 33-58 (275)
376 2qi9_C Vitamin B12 import ATP- 89.9 0.12 4.1E-06 52.3 2.2 26 203-228 25-50 (249)
377 3ly5_A ATP-dependent RNA helic 89.8 0.95 3.2E-05 45.5 9.0 18 205-222 92-109 (262)
378 2f1r_A Molybdopterin-guanine d 89.8 0.12 4.2E-06 49.2 2.1 24 205-228 3-26 (171)
379 2yz2_A Putative ABC transporte 89.8 0.13 4.5E-06 52.5 2.5 26 203-228 32-57 (266)
380 1vpl_A ABC transporter, ATP-bi 89.8 0.13 4.5E-06 52.2 2.5 26 203-228 40-65 (256)
381 3fvq_A Fe(3+) IONS import ATP- 89.7 0.15 5E-06 54.6 2.9 25 204-228 30-54 (359)
382 1wp9_A ATP-dependent RNA helic 89.7 1.8 6.2E-05 46.1 11.6 33 206-238 25-61 (494)
383 4g1u_C Hemin import ATP-bindin 89.6 0.12 4.1E-06 52.8 2.1 26 203-228 36-61 (266)
384 2wsm_A Hydrogenase expression/ 89.6 0.27 9.1E-06 47.6 4.5 26 204-229 30-55 (221)
385 2nq2_C Hypothetical ABC transp 89.5 0.13 4.5E-06 52.1 2.2 26 203-228 30-55 (253)
386 3g5u_A MCG1178, multidrug resi 89.5 0.67 2.3E-05 57.6 8.9 28 201-228 413-440 (1284)
387 2ihy_A ABC transporter, ATP-bi 89.4 0.13 4.6E-06 52.9 2.2 26 203-228 46-71 (279)
388 2ce2_X GTPase HRAS; signaling 89.4 0.19 6.7E-06 45.3 3.1 22 206-227 5-26 (166)
389 1kao_A RAP2A; GTP-binding prot 89.4 0.2 6.9E-06 45.4 3.2 23 205-227 4-26 (167)
390 2gks_A Bifunctional SAT/APS ki 89.3 0.29 1E-05 55.2 5.1 34 204-237 372-408 (546)
391 2it1_A 362AA long hypothetical 89.3 0.17 5.8E-06 54.2 3.0 25 204-228 29-53 (362)
392 1svi_A GTP-binding protein YSX 89.3 0.14 4.7E-06 48.4 2.1 25 203-227 22-46 (195)
393 2yyz_A Sugar ABC transporter, 89.3 0.17 5.9E-06 54.1 3.0 25 204-228 29-53 (359)
394 1z47_A CYSA, putative ABC-tran 89.3 0.16 5.5E-06 54.2 2.8 26 203-228 40-65 (355)
395 2p6r_A Afuhel308 helicase; pro 89.2 0.51 1.7E-05 54.6 7.2 18 205-222 41-58 (702)
396 1u8z_A RAS-related protein RAL 89.2 0.22 7.6E-06 45.1 3.4 24 204-227 4-27 (168)
397 3lxw_A GTPase IMAP family memb 89.2 0.76 2.6E-05 46.0 7.6 25 203-227 20-44 (247)
398 1oyw_A RECQ helicase, ATP-depe 89.2 0.62 2.1E-05 52.1 7.7 20 205-224 41-60 (523)
399 2wjy_A Regulator of nonsense t 89.2 0.34 1.1E-05 57.3 5.7 22 206-227 373-394 (800)
400 1v43_A Sugar-binding transport 89.1 0.18 6.1E-06 54.2 3.0 26 203-228 36-61 (372)
401 3rlf_A Maltose/maltodextrin im 89.1 0.18 6.2E-06 54.3 3.0 25 204-228 29-53 (381)
402 3szr_A Interferon-induced GTP- 89.0 0.68 2.3E-05 52.9 8.0 26 201-227 43-68 (608)
403 1ek0_A Protein (GTP-binding pr 89.0 0.22 7.6E-06 45.3 3.2 23 205-227 4-26 (170)
404 3d31_A Sulfate/molybdate ABC t 88.9 0.15 5.2E-06 54.2 2.3 26 203-228 25-50 (348)
405 1z0j_A RAB-22, RAS-related pro 88.9 0.23 7.8E-06 45.3 3.2 25 204-228 6-30 (170)
406 1g29_1 MALK, maltose transport 88.8 0.18 6.2E-06 54.2 2.8 26 203-228 28-53 (372)
407 3ch4_B Pmkase, phosphomevalona 88.8 0.2 6.9E-06 49.2 2.9 31 200-230 7-37 (202)
408 3e2i_A Thymidine kinase; Zn-bi 88.8 0.38 1.3E-05 47.7 4.9 69 206-275 30-114 (219)
409 2wji_A Ferrous iron transport 88.7 0.22 7.6E-06 45.9 3.1 23 205-227 4-26 (165)
410 1g16_A RAS-related protein SEC 88.7 0.23 7.8E-06 45.3 3.1 23 205-227 4-26 (170)
411 1wms_A RAB-9, RAB9, RAS-relate 88.7 0.24 8.1E-06 45.7 3.2 24 204-227 7-30 (177)
412 1z08_A RAS-related protein RAB 88.7 0.24 8.3E-06 45.2 3.2 24 204-227 6-29 (170)
413 3ld9_A DTMP kinase, thymidylat 88.6 0.29 9.8E-06 48.8 3.9 32 203-234 20-55 (223)
414 1ky3_A GTP-binding protein YPT 88.6 0.25 8.6E-06 45.6 3.3 24 204-227 8-31 (182)
415 1nij_A Hypothetical protein YJ 88.6 0.41 1.4E-05 49.9 5.3 23 206-228 6-28 (318)
416 2zej_A Dardarin, leucine-rich 88.6 0.19 6.5E-06 47.3 2.5 21 206-226 4-24 (184)
417 1yrb_A ATP(GTP)binding protein 88.5 0.47 1.6E-05 47.2 5.5 34 203-236 13-48 (262)
418 2nzj_A GTP-binding protein REM 88.4 0.24 8.2E-06 45.5 3.0 22 205-226 5-26 (175)
419 2pjz_A Hypothetical protein ST 88.4 0.18 6.3E-06 51.4 2.4 25 204-228 30-54 (263)
420 1r2q_A RAS-related protein RAB 88.4 0.26 8.8E-06 44.9 3.2 24 204-227 6-29 (170)
421 1c1y_A RAS-related protein RAP 88.3 0.27 9.1E-06 44.7 3.2 23 205-227 4-26 (167)
422 1upt_A ARL1, ADP-ribosylation 88.3 0.33 1.1E-05 44.4 3.9 24 204-227 7-30 (171)
423 4ag6_A VIRB4 ATPase, type IV s 88.2 0.43 1.5E-05 51.1 5.3 25 203-227 34-58 (392)
424 2erx_A GTP-binding protein DI- 88.2 0.22 7.7E-06 45.4 2.7 22 205-226 4-25 (172)
425 2lkc_A Translation initiation 88.2 0.27 9.3E-06 45.3 3.3 24 203-226 7-30 (178)
426 2wjg_A FEOB, ferrous iron tran 88.2 0.22 7.7E-06 46.5 2.7 23 205-227 8-30 (188)
427 2p5s_A RAS and EF-hand domain 88.2 0.29 1E-05 46.6 3.6 25 203-227 27-51 (199)
428 3bc1_A RAS-related protein RAB 88.1 0.27 9.2E-06 45.9 3.2 24 204-227 11-34 (195)
429 2vp4_A Deoxynucleoside kinase; 88.1 0.27 9.2E-06 48.6 3.4 24 204-227 20-43 (230)
430 1dek_A Deoxynucleoside monopho 88.1 0.45 1.5E-05 47.9 5.0 27 206-232 3-29 (241)
431 1ewq_A DNA mismatch repair pro 88.1 0.64 2.2E-05 54.6 7.0 24 204-227 576-599 (765)
432 2db3_A ATP-dependent RNA helic 88.1 1.1 3.9E-05 48.4 8.6 54 165-220 53-109 (434)
433 1r8s_A ADP-ribosylation factor 88.0 0.28 9.6E-06 44.6 3.2 22 206-227 2-23 (164)
434 1oxx_K GLCV, glucose, ABC tran 88.0 0.15 5.3E-06 54.3 1.6 25 204-228 31-55 (353)
435 2bbs_A Cystic fibrosis transme 88.0 0.2 6.7E-06 51.9 2.4 25 203-227 63-87 (290)
436 3q85_A GTP-binding protein REM 88.0 0.27 9.2E-06 45.0 3.1 21 206-226 4-24 (169)
437 3q72_A GTP-binding protein RAD 88.0 0.24 8.3E-06 45.1 2.8 21 206-226 4-24 (166)
438 2y8e_A RAB-protein 6, GH09086P 87.9 0.28 9.5E-06 45.2 3.1 23 205-227 15-37 (179)
439 3gd7_A Fusion complex of cysti 87.9 0.23 7.9E-06 53.7 2.9 27 202-228 45-71 (390)
440 1z0f_A RAB14, member RAS oncog 87.8 0.3 1E-05 45.0 3.2 25 204-228 15-39 (179)
441 2o8b_B DNA mismatch repair pro 87.7 1.8 6.3E-05 52.4 10.8 22 204-225 789-810 (1022)
442 2hxs_A RAB-26, RAS-related pro 87.7 0.26 9E-06 45.5 2.8 23 204-226 6-28 (178)
443 3sqw_A ATP-dependent RNA helic 87.6 1.8 6.1E-05 48.8 10.2 56 165-220 14-76 (579)
444 2xzl_A ATP-dependent helicase 87.6 0.49 1.7E-05 55.9 5.7 31 206-236 377-411 (802)
445 3con_A GTPase NRAS; structural 87.6 0.3 1E-05 45.8 3.2 24 205-228 22-45 (190)
446 4dsu_A GTPase KRAS, isoform 2B 87.6 0.31 1E-05 45.4 3.2 25 204-228 4-28 (189)
447 3tbk_A RIG-I helicase domain; 87.5 4 0.00014 44.7 12.8 34 205-238 20-61 (555)
448 2fn4_A P23, RAS-related protei 87.5 0.3 1E-05 45.0 3.1 24 204-227 9-32 (181)
449 1m7b_A RND3/RHOE small GTP-bin 87.5 0.3 1E-05 45.8 3.1 24 204-227 7-30 (184)
450 3t34_A Dynamin-related protein 87.5 1.9 6.7E-05 45.4 9.8 22 206-227 36-57 (360)
451 3clv_A RAB5 protein, putative; 87.5 0.37 1.3E-05 45.2 3.8 24 204-227 7-30 (208)
452 2efe_B Small GTP-binding prote 87.4 0.32 1.1E-05 45.0 3.2 24 204-227 12-35 (181)
453 2a9k_A RAS-related protein RAL 87.4 0.32 1.1E-05 45.1 3.2 24 204-227 18-41 (187)
454 2gj8_A MNME, tRNA modification 87.4 0.29 9.9E-06 45.7 2.9 23 205-227 5-27 (172)
455 2oil_A CATX-8, RAS-related pro 87.3 0.32 1.1E-05 45.8 3.2 24 204-227 25-48 (193)
456 4tmk_A Protein (thymidylate ki 87.3 0.31 1.1E-05 48.0 3.3 24 205-228 4-27 (213)
457 1ko7_A HPR kinase/phosphatase; 87.3 0.36 1.2E-05 50.6 3.8 29 204-233 144-172 (314)
458 2bme_A RAB4A, RAS-related prot 87.2 0.32 1.1E-05 45.3 3.1 24 204-227 10-33 (186)
459 3t1o_A Gliding protein MGLA; G 87.2 0.33 1.1E-05 45.4 3.2 25 204-228 14-38 (198)
460 1mh1_A RAC1; GTP-binding, GTPa 87.1 0.37 1.3E-05 44.7 3.5 23 205-227 6-28 (186)
461 3tw8_B RAS-related protein RAB 87.1 0.3 1E-05 45.0 2.9 23 204-226 9-31 (181)
462 1knx_A Probable HPR(Ser) kinas 87.1 0.34 1.2E-05 50.7 3.5 29 204-233 147-175 (312)
463 2atv_A RERG, RAS-like estrogen 87.0 0.38 1.3E-05 45.5 3.6 24 204-227 28-51 (196)
464 2hf9_A Probable hydrogenase ni 87.0 0.4 1.4E-05 46.6 3.8 25 204-228 38-62 (226)
465 3iby_A Ferrous iron transport 86.9 0.79 2.7E-05 46.3 6.1 22 206-227 3-24 (256)
466 2npi_A Protein CLP1; CLP1-PCF1 86.9 0.34 1.1E-05 53.5 3.5 27 202-228 136-162 (460)
467 3kkq_A RAS-related protein M-R 86.7 0.37 1.3E-05 44.8 3.2 24 204-227 18-41 (183)
468 4hlc_A DTMP kinase, thymidylat 86.7 0.58 2E-05 45.7 4.8 32 205-236 3-36 (205)
469 2g6b_A RAS-related protein RAB 86.6 0.38 1.3E-05 44.4 3.3 25 203-227 9-33 (180)
470 2gf9_A RAS-related protein RAB 86.6 0.37 1.3E-05 45.3 3.2 24 204-227 22-45 (189)
471 1u0l_A Probable GTPase ENGC; p 86.6 0.41 1.4E-05 49.6 3.8 24 205-228 170-193 (301)
472 4a2p_A RIG-I, retinoic acid in 86.6 3.6 0.00012 45.2 11.8 34 205-238 23-64 (556)
473 1f2t_A RAD50 ABC-ATPase; DNA d 86.5 0.41 1.4E-05 44.2 3.4 23 206-228 25-47 (149)
474 1m2o_B GTP-binding protein SAR 86.5 0.36 1.2E-05 45.7 3.1 23 205-227 24-46 (190)
475 1pui_A ENGB, probable GTP-bind 86.4 0.25 8.6E-06 47.3 2.0 25 203-227 25-49 (210)
476 3tkl_A RAS-related protein RAB 86.4 0.38 1.3E-05 45.2 3.2 24 204-227 16-39 (196)
477 2b6h_A ADP-ribosylation factor 86.3 0.49 1.7E-05 44.9 3.9 24 203-226 28-51 (192)
478 2obl_A ESCN; ATPase, hydrolase 86.3 0.52 1.8E-05 50.0 4.5 28 204-231 71-98 (347)
479 2v6i_A RNA helicase; membrane, 86.3 1.2 3.9E-05 48.5 7.4 17 205-221 3-19 (431)
480 3dz8_A RAS-related protein RAB 86.3 0.39 1.3E-05 45.3 3.3 25 204-228 23-47 (191)
481 2yv5_A YJEQ protein; hydrolase 86.3 0.59 2E-05 48.4 4.8 23 205-228 166-188 (302)
482 2cxx_A Probable GTP-binding pr 86.3 0.35 1.2E-05 45.1 2.9 22 206-227 3-24 (190)
483 3tui_C Methionine import ATP-b 86.2 0.34 1.2E-05 51.9 3.0 26 203-228 53-78 (366)
484 2bov_A RAla, RAS-related prote 86.1 0.41 1.4E-05 45.4 3.2 24 204-227 14-37 (206)
485 3c5c_A RAS-like protein 12; GD 86.1 0.41 1.4E-05 45.2 3.2 23 205-227 22-44 (187)
486 1x3s_A RAS-related protein RAB 86.1 0.41 1.4E-05 44.8 3.2 24 204-227 15-38 (195)
487 1moz_A ARL1, ADP-ribosylation 86.0 0.41 1.4E-05 44.4 3.2 24 203-226 17-40 (183)
488 3pqc_A Probable GTP-binding pr 86.0 0.33 1.1E-05 45.4 2.5 23 205-227 24-46 (195)
489 3ice_A Transcription terminati 85.9 0.65 2.2E-05 50.1 5.0 25 204-228 174-198 (422)
490 3k53_A Ferrous iron transport 85.9 0.36 1.2E-05 48.9 2.9 23 205-227 4-26 (271)
491 3ihw_A Centg3; RAS, centaurin, 85.9 0.42 1.4E-05 45.1 3.2 23 205-227 21-43 (184)
492 2fg5_A RAB-22B, RAS-related pr 85.9 0.4 1.4E-05 45.3 3.1 24 204-227 23-46 (192)
493 3l9o_A ATP-dependent RNA helic 85.9 3.3 0.00011 50.7 11.8 33 205-237 200-235 (1108)
494 3bwd_D RAC-like GTP-binding pr 85.8 0.51 1.7E-05 43.6 3.7 24 204-227 8-31 (182)
495 3ug7_A Arsenical pump-driving 85.8 0.51 1.7E-05 50.0 4.1 38 202-239 24-64 (349)
496 1tq4_A IIGP1, interferon-induc 85.8 0.42 1.5E-05 52.0 3.5 23 205-227 70-92 (413)
497 3t5g_A GTP-binding protein RHE 85.8 0.42 1.4E-05 44.3 3.1 24 204-227 6-29 (181)
498 1zd9_A ADP-ribosylation factor 85.8 0.43 1.5E-05 44.9 3.2 24 204-227 22-45 (188)
499 1vg8_A RAS-related protein RAB 85.7 0.45 1.5E-05 45.2 3.3 25 204-228 8-32 (207)
500 1z06_A RAS-related protein RAB 85.7 0.44 1.5E-05 44.8 3.2 24 204-227 20-43 (189)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.2e-82 Score=710.89 Aligned_cols=443 Identities=33% Similarity=0.556 Sum_probs=373.2
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~- 243 (686)
.++++|+||+|.+++++++++++.++++|..|..+|.+.|+|+||+||||||||++|+++|++++.||+.++++++.+.
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 244 ~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
.+.+..+++.+|..|+..+||||||||+|+++.++. +.+.+..+++++|+.+|+++... .+|+||+|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~---------~~viVIaa 160 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK---------EGIIVMAA 160 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG---------GTEEEEEE
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC---------CCEEEEEe
Confidence 577888999999999999999999999999987553 34567788999999999986543 35999999
Q ss_pred cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
||+++.||++++||||||+.|.+++|+.++|.+|++.|++..++..++++..++..++||+|+||.++|++|++.|.+++
T Consensus 161 Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~ 240 (476)
T 2ce7_A 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG 240 (476)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999999998
Q ss_pred CCcccHHHHHHHHHHHHHhccccccchhHHhhhhcchhhHHHHHHHHHHHHHHHHHhhcCCCccceeEEeecCC-cceeE
Q 005643 400 HSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGG-KETAI 478 (686)
Q Consensus 400 ~~~It~~dl~~Al~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~~~i~p~g-~~~~~ 478 (686)
...|+.+|+..|+++++.. . ++....+++++++.+||||+|||++++.+|+.+++++++|.|+| +++|+
T Consensus 241 ~~~I~~~dl~~al~~v~~~---~-------~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~ 310 (476)
T 2ce7_A 241 RDKITMKDFEEAIDRVIAG---P-------ARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGY 310 (476)
T ss_dssp CSSBCHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC---------
T ss_pred CCeecHHHHHHHHHHHhcC---c-------cccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccce
Confidence 8899999999999998631 1 22234677788999999999999999999999999999999999 99999
Q ss_pred EEeeccccccccccccHHHHHHHHHHHhhhhHHHHHhcCCCCCCCCcchHHHHHHHHHHHhhcccccccCcccccccccc
Q 005643 479 SVFYPREDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGL 558 (686)
Q Consensus 479 ~~~~p~e~~~~~~~~t~~~l~~~i~v~LgGRaAEel~fG~~~ttGa~~Dl~~AT~iA~~mV~~~~~~~~g~~~~~~~~g~ 558 (686)
|+++|.+|. .++|+.+|+++|+++|||||||+++||+ +||||+|||++||+||+.||++||| ++++|+
T Consensus 311 ~~~~p~~~~---~~~~~~~l~~~i~~~l~Gr~ae~~~~g~-~~~ga~~Dl~~at~~a~~mv~~~gm--------~~~~g~ 378 (476)
T 2ce7_A 311 TLHLPEEDK---YLVSRNELLDKLTALLGGRAAEEVVFGD-VTSGAANDIERATEIARNMVCQLGM--------SEELGP 378 (476)
T ss_dssp --------C---CSCBHHHHHHHHHHHTHHHHHHHHHHSS-CCGGGHHHHHHHHHHHHHHHHTSCC--------CTTTCS
T ss_pred EEEcCcccc---cccCHHHHHHHHHHHHhHHHHHhhhcCC-CCcccHHHHHHHHHHHHHHHHHhCC--------CCcCCc
Confidence 999998875 3569999999999999999999999995 9999999999999999999999654 444455
Q ss_pred ccCCCCCCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHH
Q 005643 559 LDRPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEE 638 (686)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~nr~~L~~lA~~LlekEtL~g~ei~~ 638 (686)
+.+.....+.|++.++ ...++||++|+..||+||+++|++||++|++||++||+.|++||++|+|+|||+++||++
T Consensus 379 ~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~ 454 (476)
T 2ce7_A 379 LAWGKEEQEVFLGKEI----TRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRR 454 (476)
T ss_dssp CCCCC-----------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHH
T ss_pred eeecCCCccccccccc----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHH
Confidence 5444333445555432 235789999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC
Q 005643 639 KLQG 642 (686)
Q Consensus 639 il~~ 642 (686)
|+.+
T Consensus 455 ~~~~ 458 (476)
T 2ce7_A 455 ILSE 458 (476)
T ss_dssp HTC-
T ss_pred Hhcc
Confidence 9975
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=8.7e-81 Score=699.68 Aligned_cols=460 Identities=34% Similarity=0.554 Sum_probs=398.3
Q ss_pred hcchhhhhhcccccCCCcccCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHH
Q 005643 145 NQLFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTL 224 (686)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAral 224 (686)
++.|+|+++++++... . ++++|+||+|.+++++.+++++.+++++..|..+|.+.|+|+||+||||||||+||+++
T Consensus 9 ~~~~~~~~~~~~~~~~---~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 9 DSAFSFTKSRARVLTE---A-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp ---------CCEEECS---C-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHH
T ss_pred CCCCCcccCcceeecc---C-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHH
Confidence 3578899988766542 3 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEeCccccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCC
Q 005643 225 AKESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGD 299 (686)
Q Consensus 225 A~e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~l~~LL~~ld~~ 299 (686)
|++++.+|++++++++.+. .+.+..+++.+|+.++...|||+||||||.++.++. .++++..+++++++.+|+++
T Consensus 85 a~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 85 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp HHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred HHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 9999999999999999887 567778899999999888899999999999976543 23567778999999999987
Q ss_pred cccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCC
Q 005643 300 KERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF 379 (686)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~ 379 (686)
.... .++++++||+|+.||++++||||||++|.|++|+.++|.+||+.|+++.++..++++..+|..++|+
T Consensus 165 ~~~~---------~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~ 235 (499)
T 2dhr_A 165 EKDT---------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGF 235 (499)
T ss_dssp CSSC---------CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSC
T ss_pred ccCc---------cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCC
Confidence 6433 4899999999999999999999999999999999999999999999988888899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhccccccchhHHhhhhcchhhHHHHHHHHHHHHHHHHHhhcC
Q 005643 380 SGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFP 459 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~vA~HEaGhav~a~~~p 459 (686)
+|+||+++|++|++.|.+++...|+.+|+.+|+++++... ++....+++++++.+||||+|||++++++|
T Consensus 236 ~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~----------~~~~~~~~~~e~~~~a~~e~g~av~~~~l~ 305 (499)
T 2dhr_A 236 VGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLP----------AKKSLVLSPRDRRITAYHEAGHALAAHFLE 305 (499)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCS----------SSSCCCCCTTHHHHHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhccc----------ccccchhhHHHHhhhHHHHHHHHHHHhhcC
Confidence 9999999999999999998888999999999999986421 122345777889999999999999999999
Q ss_pred CCccceeEEeecCCcceeEEEeecc-ccccccccccHHHHHHHHHHHhhhhHHHHHhcCCCCCCCCcchHHHHHHHHHHH
Q 005643 460 RFDWHAFSQLLPGGKETAISVFYPR-EDTIDQGYTTFGYLKMQMVVAHGGRCAERLVFGDDVTDGGKDDLEKITKIAREM 538 (686)
Q Consensus 460 ~~~~~~~~~i~p~g~~~~~~~~~p~-e~~~~~~~~t~~~l~~~i~v~LgGRaAEel~fG~~~ttGa~~Dl~~AT~iA~~m 538 (686)
+.+++++++|.|+|+++|+++ |. ++. ++.|+.+|+++|+++|||||||+++||+ +||||+|||++||+||+.|
T Consensus 306 ~~~~v~~~~i~pr~~~~g~~~--p~q~~~---~~~t~~~l~~~i~~~lgGr~ae~~~~g~-~~~ga~~Dl~~at~~a~~m 379 (499)
T 2dhr_A 306 HADGVHKVTIVPRGRALGFMM--PRREDM---LHWSRKRLLDQIAVALAGRAAEEIVFDD-VTTGAENDFRQATELARRM 379 (499)
T ss_dssp SCCCCCCEESCCSSCTTCSSH--HHHTTC---CCCCHHHHHHHHHHHHHHHHHHHHHSCS-CCBCCCHHHHHHHHHHHHH
T ss_pred CCCeeeEEEeecCCCcCcccc--cchhhh---hccCHHHHHHHHHHHhhhHhHHHhhhcc-cCcccHHHHHHHHHHHHHH
Confidence 999999999999999999887 87 664 3469999999999999999999999995 9999999999999999999
Q ss_pred hhcccccccCccccccccccccCCCCCCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHH
Q 005643 539 VISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELSELFTRELTRYIEETEELAMNGLRDNKHIL 618 (686)
Q Consensus 539 V~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~nr~~L 618 (686)
|++||| ++.+|++.+..... .+++ ++. .++||++|+..||+||+++|++||++|++||++|++.|
T Consensus 380 v~~~gm--------~~~~g~~~~~~~~~-~~~~-~~~-----~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l 444 (499)
T 2dhr_A 380 ITEWGM--------HPEFGPVAYAVRED-TYLG-GYD-----VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVL 444 (499)
T ss_dssp HTTSCC--------CSSSCSCCCCCCCC-CSSC-CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHhCC--------CCCCCceeecCCCc-cccc-ccc-----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999654 44444444433222 4444 221 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCHHHHHHHHcCCCCCCc
Q 005643 619 EIIAKELLENSRITGLEVEEKLQGLSPVMF 648 (686)
Q Consensus 619 ~~lA~~LlekEtL~g~ei~~il~~~~~~~~ 648 (686)
++||++|+|+|||+++||++|+.+.++...
T Consensus 445 ~~~a~~l~~~e~l~~~~~~~~~~~~~~~~~ 474 (499)
T 2dhr_A 445 ERVAETLLERETLTAEEFQRVVEGLPLEAP 474 (499)
T ss_dssp HHHHHHHHHHSEECHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHhCeeCHHHHHHHhccCCCCCc
Confidence 999999999999999999999987655433
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-51 Score=444.52 Aligned_cols=246 Identities=32% Similarity=0.521 Sum_probs=231.5
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.+.|+++|+||.|.+++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 357889999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~----~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
.. .|.++..++.+|..|+..+||||||||||++++++..+ +.+...++++||.+||++.... +|+|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---------~V~v 290 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK---------NIKI 290 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC---------CEEE
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC---------CeEE
Confidence 98 68999999999999999999999999999998876432 3355778999999999986544 4999
Q ss_pred EEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
|+|||+|+.||||++||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|+
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (686)
++++..|+++||..|+++++.
T Consensus 371 r~~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 371 RERRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HTTCSBCCHHHHHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHHHhC
Confidence 999999999999999999864
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-50 Score=437.03 Aligned_cols=246 Identities=32% Similarity=0.532 Sum_probs=231.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
...++++|+||+|.+++|++|++.+.+ +++|+.|...|+++|+|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 467899999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
.. .+.++..++.+|..|+..+||||||||+|++++++.. ++.+...++++||++||++.... +|+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~---------~ViV 324 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG---------DVKV 324 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS---------SEEE
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC---------CEEE
Confidence 98 6889999999999999999999999999999887632 23456789999999999976554 4999
Q ss_pred EEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
|+|||+|+.||+||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|+
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (686)
++++..|+++||..|+++++.
T Consensus 405 r~~~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 405 RERRMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp HTTCSCBCHHHHHHHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHHHhC
Confidence 999999999999999999864
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-49 Score=434.58 Aligned_cols=246 Identities=32% Similarity=0.551 Sum_probs=230.7
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
++.|+++|+||+|.+++|++|++.+.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 357899999999999999999999887 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~----~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
.. .|.+++.++.+|..|+..+||||||||+|+++.+|... +.....+++++|.+||++.... +|+|
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---------~ViV 351 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG---------NIKV 351 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT---------TEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC---------cEEE
Confidence 98 68899999999999999999999999999998876432 2345678999999999976544 4999
Q ss_pred EEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
|+|||+|+.||+||+||||||++|+|++|+.++|.+||+.|+++.++..++|+..||..|.||||+||+++|++|++.|+
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~~ 417 (686)
++++..|+++||..|+++++.
T Consensus 432 r~~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 432 RARRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHTCSSBCHHHHHHHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHHHhc
Confidence 999999999999999999874
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-49 Score=433.69 Aligned_cols=244 Identities=35% Similarity=0.590 Sum_probs=229.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
+.|+++|+||+|.+++|++|++.+.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 57899999999999999999999987 99999999999999999999999999999999999999999999999999998
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .+.+...++.+|..|+.++||||||||+|++++++.. .+.+...++++||.+||++.... +|+||
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~---------~vivI 324 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG---------QTKII 324 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT---------SSEEE
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC---------CeEEE
Confidence 8 6888999999999999999999999999999887633 23456788999999999987554 48999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
+|||+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|++
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (686)
+++..|+++||..|++++.
T Consensus 405 ~~~~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 405 DDRDHINPDDLMKAVRKVA 423 (437)
T ss_dssp TTCSSBCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999875
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-49 Score=433.18 Aligned_cols=245 Identities=31% Similarity=0.526 Sum_probs=228.4
Q ss_pred ccCCcccccceecCcccHHHHHHHHH-HhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMI-YMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~-~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
...|+++|+||+|.+++|++|++.+. ++++|+.|...|+++|+|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 35789999999999999999998765 59999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
.. .|.+.+.++.+|..|+..+||||||||+|++++++.. ++.+...++++||.+||++.... +|+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~---------~ViV 323 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD---------RVKV 323 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC---------SSEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC---------CEEE
Confidence 88 6889999999999999999999999999999887643 23455678999999999987544 4899
Q ss_pred EEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
|+|||+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|+
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccHHHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~~~ 416 (686)
++++..|+++||.+|++++.
T Consensus 404 r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 404 RNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp HHTCSSBCHHHHHHHHHSCS
T ss_pred HcCCCCcCHHHHHHHHHHHh
Confidence 99999999999999998753
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-48 Score=426.69 Aligned_cols=245 Identities=32% Similarity=0.521 Sum_probs=229.3
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.+.|+++|+||+|.+++|+.|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 367889999999999999999998875 9999999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC----CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~----~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
.. .|.+...++.+|..|+..+||||||||+|++++++. +++.+..+++++||++||++.... +|+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~---------~v~v 314 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST---------NVKV 314 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC---------SEEE
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC---------CEEE
Confidence 88 688999999999999999999999999999998763 234466789999999999986654 4999
Q ss_pred EEecCCCCCCccccccCCccceEEEeC-CCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIG-LPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~-~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A 395 (686)
|+|||+|+.|||||+||||||++|+|| +|+.++|..||+.|+++.++..++|+..||..|.||||+||.++|++|++.|
T Consensus 315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a 394 (428)
T 4b4t_K 315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRA 394 (428)
T ss_dssp EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcccHHHHHHHHHHHH
Q 005643 396 VRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 396 ~r~~~~~It~~dl~~Al~~~~ 416 (686)
+++++..|+++||.+|+.+++
T Consensus 395 ~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 395 VRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHTTCSSBCHHHHHHHHHHHS
T ss_pred HHCCCCCCCHHHHHHHHHHhh
Confidence 999999999999999998865
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=2.2e-47 Score=387.33 Aligned_cols=206 Identities=26% Similarity=0.322 Sum_probs=154.4
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHhhcCCCccceeEEeecCCcceeEEEeeccccccccccccHHHHHHHHHHHhhhhH
Q 005643 431 KCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDTIDQGYTTFGYLKMQMVVAHGGRC 510 (686)
Q Consensus 431 ~~~~~~~~~~~~~vA~HEaGhav~a~~~p~~~~~~~~~i~p~g~~~~~~~~~p~e~~~~~~~~t~~~l~~~i~v~LgGRa 510 (686)
+.+..+++++|+++|||||||||||+++|+.++++++||+|||+++|+|+++|.+|. .+.|+.+|+++|+++|||||
T Consensus 6 kk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~---~~~tk~~l~~~i~v~LgGRa 82 (238)
T 2di4_A 6 GSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDK---HIYDKKDLYNKILVLLGGRA 82 (238)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------C---CCCBHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccc---cccCHHHHHHHHHHHHhHHH
Confidence 445678999999999999999999999999999999999999999999999999875 45699999999999999999
Q ss_pred HHHHhcC-CCCCCCCcchHHHHHHHHHHHhhcccccccCccccccccccccCCCCCCCccccccCCCCCCCCCCCCHHHH
Q 005643 511 AERLVFG-DDVTDGGKDDLEKITKIAREMVISPQNARLGLAGLTRRVGLLDRPDSSDGDLIKYRWDDPQVIPTDMTLELS 589 (686)
Q Consensus 511 AEel~fG-~~~ttGa~~Dl~~AT~iA~~mV~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 589 (686)
||+|+|| +++||||+|||++||+||+.||++||| ++.+|++.+..... .|++ ++. ..++||++|+
T Consensus 83 AEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GM--------s~~lG~v~~~~~~~-~flg-~~~----~~~~~Se~ta 148 (238)
T 2di4_A 83 AEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGM--------SDKVGPIAIRRVAN-PFLG-GMT----TAVDTSPDLL 148 (238)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCC--------CTTTCSCCCCC----------------CCCSCCHHHH
T ss_pred HHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCC--------CCCCCceeecCCcc-cccc-ccc----cccccCHHHH
Confidence 9999994 259999999999999999999999654 44445554443333 4554 321 2468999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhcccCHHHHHHHHcCCCCCCccccccc
Q 005643 590 ELFTRELTRYIEETEELAMNGLRDNKHILEIIAKELLENSRITGLEVEEKLQGLSPVMFEDFVKP 654 (686)
Q Consensus 590 ~~id~ev~~il~~ay~~A~~iL~~nr~~L~~lA~~LlekEtL~g~ei~~il~~~~~~~~~~~~~~ 654 (686)
..||+||++||++||++|++||++||+.|++||++|+++|||+++||.+|+...+. ..+|+.+.
T Consensus 149 ~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~~-~~~~~~~~ 212 (238)
T 2di4_A 149 REIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGI-ELKDKCKK 212 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTC-CCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCCC-CchhHHHh
Confidence 99999999999999999999999999999999999999999999999999986533 33444433
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.3e-43 Score=413.48 Aligned_cols=227 Identities=34% Similarity=0.566 Sum_probs=182.8
Q ss_pred ccCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 163 VSDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 163 ~~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
...++++|+||.|.+++|+.|++.+.+ +++|..|.+.|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 356789999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
.. .+.+++.++.+|+.|+..+||||||||||+++++|+. ++...++++++||.+||++.... +|+|
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~---------~V~v 619 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK---------NVFI 619 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS---------SEEE
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC---------CEEE
Confidence 88 6888999999999999999999999999999887642 23345678999999999986543 4999
Q ss_pred EEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
|+|||+|+.||+|++||||||++|+|++|+.++|.+||+.|+++.++..++|+..||+.|.||||+||+++|++|++.|+
T Consensus 620 i~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp ECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHH
T ss_pred EEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hh
Q 005643 397 RK 398 (686)
Q Consensus 397 r~ 398 (686)
++
T Consensus 700 r~ 701 (806)
T 3cf2_A 700 RE 701 (806)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.1e-41 Score=393.71 Aligned_cols=244 Identities=34% Similarity=0.567 Sum_probs=223.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..+.++|+||.|.+++++.|++++.+ +++|+.|..+|+++|+|||||||||||||++||++|+++|.+|+.++|+++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 35779999999999999999999997 99999999999999999999999999999999999999999999999999998
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
. .+.++..++.+|+.|+.++||||||||||+|++++.+ .++.....+++|+.+|+++.... +|+||+||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~---------~V~VIaaT 347 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---------HVIVMAAT 347 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG---------CEEEEEEC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC---------CEEEEEec
Confidence 8 6888999999999999999999999999999987654 34456778999999999976543 49999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~ 400 (686)
|+|+.||++|+||||||++|+++.|+.++|.+||+.|+++.++..++|+..||..|.||+|+||.++|++|++.|.++..
T Consensus 348 N~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~ 427 (806)
T 3cf2_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp SSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred -----------------CcccHHHHHHHHHHHH
Q 005643 401 -----------------SKIQQQDIVDVLDKQL 416 (686)
Q Consensus 401 -----------------~~It~~dl~~Al~~~~ 416 (686)
..|+.+|+..|+..+.
T Consensus 428 ~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ 460 (806)
T 3cf2_A 428 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp HHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSS
T ss_pred ccccccccccchhhhccceeeHHHHHHHHHhCC
Confidence 2467788888887653
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=8.1e-37 Score=314.62 Aligned_cols=244 Identities=36% Similarity=0.649 Sum_probs=217.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
..++.+|+||+|.+++++.+.+++.++.++..|...|.+.|+++||+||||||||++|+++|++++.|++.++++++...
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred -hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 244 -~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
.+.+...++.+|+.+....|+++||||+|.+..++.. +..+....+++++..+++.... .+++||+
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---------~~~~vI~ 155 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN---------EGIIVIA 155 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS---------SCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC---------CCEEEEE
Confidence 4566778999999999989999999999999765432 3345567899999999986543 3489999
Q ss_pred ecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 319 aTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
|||+++.+|++++|||||++.+.+++|+.++|.+|++.+++..++..++++..++..+.||+++||.++|++|+..|.++
T Consensus 156 ~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp EESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHH
Q 005643 399 GHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 399 ~~~~It~~dl~~Al~~~~ 416 (686)
+...|+.+|+..|+++++
T Consensus 236 ~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 236 NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp TCSSBCHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHh
Confidence 989999999999999875
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=321.30 Aligned_cols=243 Identities=31% Similarity=0.552 Sum_probs=201.2
Q ss_pred cCCcccccceecCcccHHHHHHH-HHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDEL-MIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~el-v~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..++++|+||+|.+++|+.|++. +..++++..|...+..+|+|++|+||||||||+|++++|++++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 35678999999999999999984 56799999999999999999999999999999999999999999999999999877
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
. .+.....++.+|+.++...|||+|+||+|.++..+... .......+++++.+|++..... .++++++|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~---------~~i~ia~t 153 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ---------QVFIMAAT 153 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT---------CEEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC---------CEEEEeec
Confidence 6 46677789999999988899999999999987543221 1122356789999999875443 48999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC---CCccccccHHHHHHhc--cCCCHHHHHHHHHHHHHHH
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG---KQLAEDVNFEELVFRT--VGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~---~~l~~dvdl~~La~~t--~G~sgadL~~lv~eA~~~A 395 (686)
|+|+.||++++||||||+.|++++|+.++|.+||+.++++ .++..++++..+|..+ .||||+||.++|++|++.|
T Consensus 154 n~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a 233 (274)
T 2x8a_A 154 NRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICA 233 (274)
T ss_dssp SCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999854 3566789999999875 4999999999999999999
Q ss_pred HHhC-----------CCcccHHHHHHHHHHH
Q 005643 396 VRKG-----------HSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 396 ~r~~-----------~~~It~~dl~~Al~~~ 415 (686)
.++. ...|+++||..|++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 234 LRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp HHHHC-----------CCBCHHHHHHHHTTC
T ss_pred HHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 8752 3369999999999865
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.2e-36 Score=319.65 Aligned_cols=243 Identities=32% Similarity=0.541 Sum_probs=213.2
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..++++|+||+|.+++++.|.+.+.+ ++.|..|..+|..+++++||+||||||||++|+++|++++.+|+.++|+++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 56789999999999999999999876 88999999999999999999999999999999999999999999999999876
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~----~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .+.....++.+|..|+...||||||||+|.+...+... .......+++|+..|++.... .+|+||
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~---------~~v~vi 158 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---------KNVFII 158 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT---------SSEEEE
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC---------CCEEEE
Confidence 6 45666778999999999999999999999997654221 123345788999999976433 349999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
+|||+++.+|++++|||||++.+++++|+.++|.+||+.+++...+..++++..++..+.||+|+||.++|++|+..|.+
T Consensus 159 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~ 238 (301)
T 3cf0_A 159 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 238 (301)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999998876
Q ss_pred hCC-------------------------CcccHHHHHHHHHHH
Q 005643 398 KGH-------------------------SKIQQQDIVDVLDKQ 415 (686)
Q Consensus 398 ~~~-------------------------~~It~~dl~~Al~~~ 415 (686)
+.. ..|+.+||..|+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 239 ESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp HHHHHHC--------------------CCCBCHHHHHHHHTTC
T ss_pred HHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 421 357888888888753
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=8.2e-36 Score=306.36 Aligned_cols=243 Identities=34% Similarity=0.609 Sum_probs=194.8
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-h
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-E 244 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~ 244 (686)
++++|+||+|.+++++.|++++.+++.+..|...|...++++||+||||||||++|+++|++++.+++.++++++... .
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999998876 4
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC-----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 245 ~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-----~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
+.+...++.+|..+....|+||||||+|.+..++... +.+....++.++..+++.... .+++||+|
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~---------~~~~vi~~ 151 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT---------DHVIVLAS 151 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT---------CCEEEEEE
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC---------CCEEEEec
Confidence 5667789999999999999999999999997654321 234456788999999875432 34899999
Q ss_pred cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccc--cHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV--NFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
||.++.+|++++|||||++.+++++|+.++|.+||+.++....+..+. .+..++..+.|+++++|.+++++|+..|.+
T Consensus 152 tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~ 231 (262)
T 2qz4_A 152 TNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231 (262)
T ss_dssp ESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---
T ss_pred CCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776655443 347899999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (686)
++...|+.+|+..|++++..
T Consensus 232 ~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 232 EGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp -----CCBCCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcc
Confidence 88889999999999998763
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-34 Score=302.42 Aligned_cols=245 Identities=33% Similarity=0.577 Sum_probs=221.6
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..++.+|++++|.+++++.|.+.+.. +..+..|...|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 46678999999999999999988765 88999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~----~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .+.....++.+|..++...|+||||||+|.+.+++... +.+....+..++..+++.... .+++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~---------~~~~vI 160 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR---------GDVKII 160 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS---------SSEEEE
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC---------CCEEEE
Confidence 7 56777889999999999999999999999998765432 345567788889988876443 348999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
+|||.++.+|++++|++||++.+.++.|+.++|.+||+.+++...+..++++..++..+.|+++++|.++|++|...|.+
T Consensus 161 ~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 161 GATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240 (285)
T ss_dssp EECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred hCCCcccHHHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQLL 417 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~~ 417 (686)
++...|+.+|+.+|+.++..
T Consensus 241 ~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 241 ELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp TTCSSBCHHHHHHHHHHHHH
T ss_pred hccCcCCHHHHHHHHHHHHh
Confidence 99999999999999998763
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.1e-34 Score=298.05 Aligned_cols=240 Identities=41% Similarity=0.732 Sum_probs=213.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
..++.+|+|++|.++++..+++++.++.++..+...+...|+|++|+||||||||++++++|+.++.+++.+++.++...
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 56789999999999999999999999999989999999999999999999999999999999999999999999887665
Q ss_pred -hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 244 -~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
.+.....++.+|+.+....|+++||||+|.++.++.. ...+....+++++.+|++..... .+++++
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~---------~~i~~a 159 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT---------AIVVMA 159 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC---------CEEEEE
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC---------CEEEEE
Confidence 4556677899999998888999999999999765432 34556778899999999865432 389999
Q ss_pred ecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 319 aTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
+||+|+.+|++++|++||++.++++.|+.++|.+||+.++++.++..++++..++..+.|++|+||.++|++|+..|.++
T Consensus 160 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 160 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999998
Q ss_pred CCCcccHHHHHHHH
Q 005643 399 GHSKIQQQDIVDVL 412 (686)
Q Consensus 399 ~~~~It~~dl~~Al 412 (686)
+...|+.+|+.+|+
T Consensus 240 ~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 GRRKITMKDLEEAA 253 (254)
T ss_dssp TCSSBCHHHHHHHT
T ss_pred cCCCcCHHHHHHHh
Confidence 88889999998875
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.7e-35 Score=310.62 Aligned_cols=224 Identities=29% Similarity=0.500 Sum_probs=196.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-CCCeEEEeCcccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEFT 241 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-g~~fi~is~s~~~ 241 (686)
..++++|+||+|.+++|+.|++.+.+ ++.|..|.. +..+++|+|||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 46789999999999999999998865 777777663 45678999999999999999999999999 8999999999988
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
.. .+.....++.+|..++..+||||||||+|.+.+++... .......+++++..|++.... ..+|+||+|
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~--------~~~v~vI~a 155 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD--------NDGILVLGA 155 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC--------CTTEEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc--------CCCEEEEEe
Confidence 77 56778889999999999999999999999998765433 344567889999999986532 235999999
Q ss_pred cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
||+|+.+|++++| ||++.+++++|+.++|.+||+.+++..+.. .+.++..|+..|.||||+||.++|++|++.|.++
T Consensus 156 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 156 TNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp ESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999877654 6678999999999999999999999999988875
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=8.6e-35 Score=310.23 Aligned_cols=225 Identities=28% Similarity=0.493 Sum_probs=194.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..++++|+||+|.+++++.|.+.+.+ ++.|..|.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 56789999999999999999998765 556655554 6678899999999999999999999999999999999999877
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
. .+.....++.+|..++...|+||||||+|.+.+++.. .........++++..|++.... ..+|+||+||
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~v~vi~at 161 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--------SQGVLVLGAT 161 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS--------CCCEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc--------CCceEEEEec
Confidence 7 5777888999999999999999999999999875532 2334566789999999986432 2359999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
|+|+.||++++| ||+..+++++|+.++|.+||+.++...+.. .+.++..|+..+.||+|+||.++|++|...|.++.
T Consensus 162 n~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 162 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp SCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred CChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999877643 56789999999999999999999999999888863
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=5.7e-34 Score=320.11 Aligned_cols=241 Identities=34% Similarity=0.582 Sum_probs=214.6
Q ss_pred CcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS- 243 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~- 243 (686)
...+|++|+|.+++++.|.+.+.. +++|..|..+|..+|+++||+||||||||++|+++|++++.+|+.++|+++...
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 457899999999999999998876 899999999999999999999999999999999999999999999999999877
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCC
Q 005643 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNR 322 (686)
Q Consensus 244 ~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~ 322 (686)
.+.....++.+|..|....||||||||||.+.+++... .......+++|+..|++.... .+++||+|||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~---------~~v~vIaaTn~ 349 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR---------AHVIVMAATNR 349 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT---------SCEEEEEEESC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC---------CceEEEEecCC
Confidence 56777889999999999999999999999998765433 444567889999999976443 34999999999
Q ss_pred CCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC-
Q 005643 323 PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHS- 401 (686)
Q Consensus 323 p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~- 401 (686)
++.||++++|+|||++.+++++|+.++|.+||+.+++...+..++++..++..+.||+++||.++|++|+..|.++...
T Consensus 350 ~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~ 429 (489)
T 3hu3_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 429 (489)
T ss_dssp GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999988888899999999999999999999999999999987644
Q ss_pred ----------------cccHHHHHHHHHHH
Q 005643 402 ----------------KIQQQDIVDVLDKQ 415 (686)
Q Consensus 402 ----------------~It~~dl~~Al~~~ 415 (686)
.|+++|+..|+.++
T Consensus 430 i~~~~~~~~~~~~~~~~vt~edf~~Al~~~ 459 (489)
T 3hu3_A 430 IDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (489)
T ss_dssp CCTTCSSCCHHHHHHCCBCHHHHHHHHTSH
T ss_pred ccccccccchhhcccCcCCHHHHHHHHHhC
Confidence 35666766666543
No 21
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.5e-33 Score=294.11 Aligned_cols=253 Identities=40% Similarity=0.709 Sum_probs=216.1
Q ss_pred chhhhhhcccccCCCcccCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHH
Q 005643 147 LFDMAYAENFILPVGYVSDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~ 226 (686)
.+.+.+++..+.. ..++++|+||+|.+++++.+++++.++.++..+...+...++|++|+||||||||++++++++
T Consensus 20 ~~~~~~~~~~~~~----~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 20 AFSFTKSRARVLT----EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp ------CCCCCBC----CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccccccccc----CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 4455544443332 347899999999999999999999999999899999999999999999999999999999999
Q ss_pred HhCCCeEEEeCccccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC----CChhHHHHHHHHHHHhcCCcc
Q 005643 227 ESGLPFVFASGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR----KDPRRRATFEALIAQLDGDKE 301 (686)
Q Consensus 227 e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~----~~~e~~~~l~~LL~~ld~~~~ 301 (686)
.++.+++.+++.++... .+.....+..+|+.+....|+++|+||+|.++.++.. ...+....+++++.+|++...
T Consensus 96 ~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 99999999999887665 4455677889999998888999999999999755432 244567788999999988654
Q ss_pred cCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCH
Q 005643 302 RTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSG 381 (686)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sg 381 (686)
.. .++++++||+|+.||++++|++||++.++++.|+.++|.+||+.+++...+..++++..++..+.|+++
T Consensus 176 ~~---------~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~ 246 (278)
T 1iy2_A 176 DT---------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG 246 (278)
T ss_dssp TC---------CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCH
T ss_pred CC---------CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCH
Confidence 32 389999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 382 ADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 382 adL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+||.++|++|+..|.+++...|+.+|+.+|+
T Consensus 247 ~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 247 ADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 9999999999999998888889999998875
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.6e-33 Score=304.73 Aligned_cols=224 Identities=28% Similarity=0.501 Sum_probs=189.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..++++|+||+|.+++++.|.+.+.+ ++.|..|.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 46789999999999999999998765 677777765 6678899999999999999999999999999999999999877
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
. .+.....++.+|..++...|+||||||+|.+.+++.. .........++|+..|++.... ..+|+||+||
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~v~vI~at 194 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND--------SQGVLVLGAT 194 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------CCEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc--------CCCeEEEeec
Confidence 6 5667788999999999999999999999999865432 3344566789999999976432 2359999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
|+++.||++++| ||++.+++++|+.++|.+||+.++...+.. .+.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 195 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 195 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp SCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999877643 5778999999999999999999999999999876
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=9.3e-36 Score=308.08 Aligned_cols=245 Identities=35% Similarity=0.658 Sum_probs=211.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
..++.+|+|++|.+++++.+.+++.++..|..|...|.+.++++||+||||||||++|+++|++++.|++.++++++...
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred -hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC-----CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 244 -EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-----KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 244 -~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-----~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
.+.+...++.+|..+....|+||||||+|.+..++.. .+......+++|+..+++.... ..+++||
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~v~vi 155 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE--------NAPVIVL 155 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS--------CSCCEEE
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC--------CCCEEEE
Confidence 3444556778999999889999999999999765321 1222234567788888765432 2348999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
+|||.++.+|++++|+|||+..++++.|+.++|.+||+.+++...+..++++..++..+.|++|+||.++|++|+..|.+
T Consensus 156 ~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 156 AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235 (268)
T ss_dssp ECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSS
T ss_pred EecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877888899999999999999999999999999988
Q ss_pred hCCCcccHHHHHHHHHHHH
Q 005643 398 KGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 398 ~~~~~It~~dl~~Al~~~~ 416 (686)
++...|+.+|+.+|+.++.
T Consensus 236 ~~~~~i~~~~~~~a~~~~~ 254 (268)
T 2r62_A 236 NNQKEVRQQHLKEAVERGI 254 (268)
T ss_dssp SCCCSCCHHHHHTSCTTCC
T ss_pred hccCCcCHHHHHHHHHHHh
Confidence 8888899999988887643
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.4e-32 Score=304.08 Aligned_cols=224 Identities=30% Similarity=0.507 Sum_probs=187.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-CCCeEEEeCcccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-GLPFVFASGAEFT 241 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-g~~fi~is~s~~~ 241 (686)
..++++|+||+|.+++++.|.+.+.+ ++.|..|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 56789999999999999999987754 667766653 45678999999999999999999999999 8999999999987
Q ss_pred ch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 242 DS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
.. .+.....++.+|..++...|+||||||||.+.+++.. ........+++|+..|++.... ..+|+||+|
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~--------~~~v~vI~a 277 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD--------NDGILVLGA 277 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC--------CSSCEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC--------CCCEEEEec
Confidence 76 4555667899999999999999999999999775543 3344567889999999886432 235899999
Q ss_pred cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
||+|+.||++++| ||++.+++++|+.++|..||+.++...+.. .+.++..|+..|.||||+||.++|++|++.|+++
T Consensus 278 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 278 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp ESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999876653 5678999999999999999999999999988875
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=280.45 Aligned_cols=243 Identities=28% Similarity=0.455 Sum_probs=203.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..++++|+||+|.+++++.|.+.+.+ +..+..|...+ ..++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34678999999999999999998875 67777666554 67899999999999999999999999999999999999987
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
. .+.....++.+|..++...|+||||||+|.+.+++.. .+......+++++..+++..... ..+++||+||
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~-------~~~v~vI~at 228 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS-------EDRILVVGAT 228 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C-------CCCEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC-------CCCEEEEEec
Confidence 7 5667788999999999999999999999999865432 23445677889999998764321 2358999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
|.++.+|++++| ||+..++++.|+.++|.+|++.++...... .+.++..++..+.||+++||.++|++|...+.++-
T Consensus 229 n~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 229 NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp SCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred CChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999888665432 45578999999999999999999999999988743
Q ss_pred ------------CCcccHHHHHHHHHHHH
Q 005643 400 ------------HSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 400 ------------~~~It~~dl~~Al~~~~ 416 (686)
...|+.+||..|+.++.
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 307 QTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp CC----------CCCBCHHHHHHHHHHHG
T ss_pred hhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 24699999999998764
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=2.2e-30 Score=271.74 Aligned_cols=242 Identities=26% Similarity=0.461 Sum_probs=199.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
+.++++|+|++|.+++++.|.+.+.. +..|..|...+ .+++++||+||||||||++|+++|++++.+|+.++|+++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 45788999999999999999887765 55666666544 46899999999999999999999999999999999999877
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
. .+.+...++.+|..+....|+||||||+|.+...+... ........+.++..+++..... ...+++||++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~vi~~t 166 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP------DGDRIVVLAAT 166 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------CEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC------CCCcEEEEeec
Confidence 6 46677789999999999999999999999997654322 2223556788999998765431 12348999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCc-cccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL-AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l-~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
|+++.+|++++| ||+..+++++|+.++|..|++.++..... ..+.++..++..+.|++++||.++|++|+..|.++.
T Consensus 167 n~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 167 NRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp SCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred CChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999988876443 234568899999999999999999999999998874
Q ss_pred C------------CcccHHHHHHHHHH
Q 005643 400 H------------SKIQQQDIVDVLDK 414 (686)
Q Consensus 400 ~------------~~It~~dl~~Al~~ 414 (686)
. ..|+.+|+..|+.+
T Consensus 245 ~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 245 NVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp C--------CCCCCCCCHHHHHHHTTS
T ss_pred hhhhcccccccccCCcCHHHHHHHHHH
Confidence 2 46999999988865
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.6e-32 Score=325.70 Aligned_cols=227 Identities=33% Similarity=0.560 Sum_probs=198.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..+.++|+|++|.+++|+.|.+.+.+ ++.+..|...+..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 56788999999999999999998876 67778888889999999999999999999999999999999999999999987
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCC----hhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKD----PRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~----~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
. .+.....++.+|+.++...||||||||||.++..+.+.. .....++++||.+|++.... .+|+||
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~---------~~v~vI 620 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---------KNVFII 620 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------------CCBCC
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc---------CCeEEE
Confidence 7 567778899999999999999999999999987654332 23567889999999986543 348999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 397 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r 397 (686)
+|||+++.||++++|||||++.|++++|+.++|.+||+.+++..++..++++..|+..+.|||++||.++|++|+..|.+
T Consensus 621 ~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~ 700 (806)
T 1ypw_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700 (806)
T ss_dssp CCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHS
T ss_pred EecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999988
Q ss_pred hC
Q 005643 398 KG 399 (686)
Q Consensus 398 ~~ 399 (686)
+.
T Consensus 701 ~~ 702 (806)
T 1ypw_A 701 ES 702 (806)
T ss_dssp CC
T ss_pred HH
Confidence 75
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=275.13 Aligned_cols=242 Identities=26% Similarity=0.454 Sum_probs=194.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..++++|+||+|.+++++.|.+.+.. +..+..|...+ .+++++||+||||||||++|+++|.+++.+|+.++|+++..
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 45678999999999999988887765 45565665555 45899999999999999999999999999999999999887
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
. .+.....++.+|..++...|+||||||||.+..++.. ........++.|+..|++..... ...|+||+||
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~v~vI~at 259 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG-------DDRVLVMGAT 259 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------CEEEEEEE
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC-------CCCEEEEEec
Confidence 7 4566778999999999999999999999999765432 23345667888999998754321 2358999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK- 398 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~- 398 (686)
|+++.||++++| ||+..++++.|+.++|.+||+.++...... .+.++..|+..+.|+++++|.++++.|+..+.++
T Consensus 260 n~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 260 NRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp SCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred CCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 999999999999999999999888664332 3457899999999999999999999999999886
Q ss_pred -----------CCCcccHHHHHHHHHHH
Q 005643 399 -----------GHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 399 -----------~~~~It~~dl~~Al~~~ 415 (686)
....|+.+||..++.++
T Consensus 338 ~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 338 KPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp CCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 33468999999998763
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=2e-30 Score=273.24 Aligned_cols=183 Identities=19% Similarity=0.277 Sum_probs=138.5
Q ss_pred hCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhhHHHHHHHHHHHH----HhcCCeEEEEccchh
Q 005643 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAARINEMFSIA----RRNAPAFVFVDEIDA 273 (686)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~~~~~vr~lF~~A----k~~~P~ILfIDEiDa 273 (686)
.+.+.|+++|||||||||||++|+++|++++.+|+.++++++... .+.....++.+|..| +...||||||||||+
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 367889999999999999999999999999999999999998877 567778899999998 577899999999999
Q ss_pred hhccCCCCCh---hHHHHHHHHHHHhcCCcccC--CcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHH
Q 005643 274 IAGRHARKDP---RRRATFEALIAQLDGDKERT--GIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAK 348 (686)
Q Consensus 274 l~~~~~~~~~---e~~~~l~~LL~~ld~~~~~~--~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~ 348 (686)
+++++.+... ......+.|+..||+..... +........+|+||+|||+++.||++++|||||++.++ .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 9875432221 23456688899888543211 10012234569999999999999999999999999887 57999
Q ss_pred HHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHH
Q 005643 349 QRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNL 387 (686)
Q Consensus 349 eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~l 387 (686)
+|.+|++.++.. .++++..++..+.||++++|..+
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHH
Confidence 999999988763 35678999999999999998753
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=5.3e-27 Score=278.39 Aligned_cols=228 Identities=36% Similarity=0.603 Sum_probs=205.7
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTD 242 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~ 242 (686)
..+.++|+||+|.+++++.|.+.+.. +++|..|..+++++++++||+||||||||++|+++|++++.+++.++|.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34578999999999999999999886 99999999999999999999999999999999999999999999999999887
Q ss_pred h-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCC-ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 243 S-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARK-DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 243 ~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~-~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
. .+.....++.+|..+....|+|+||||+|.+..++... .......+++|+..|++..... ++++|+||
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~---------~v~vI~at 347 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA---------HVIVMAAT 347 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS---------CCEEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc---------cEEEeccc
Confidence 6 56778889999999999999999999999998765433 3445667889999999866443 48999999
Q ss_pred CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Q 005643 321 NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGH 400 (686)
Q Consensus 321 N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~ 400 (686)
|+++.+|+++.++|||++.+.++.|+.++|.+||+.++....+..+.++..++..+.||+++++..++++|+..+.++..
T Consensus 348 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp SCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999998887654
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=1.8e-25 Score=249.45 Aligned_cols=203 Identities=20% Similarity=0.262 Sum_probs=143.3
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC--CCeEEEeCcccc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFT 241 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g--~~fi~is~s~~~ 241 (686)
..+...|++++|++++++.+.+++..++. |..+++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred cChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 35667899999999999999998877654 355789999999999999999999999999 999999999998
Q ss_pred ch-hhhHHHHHHHHHHHH---HhcCCeEEEEccchhhhccCCCCChhH-H-------------------HHHHHHHHHhc
Q 005643 242 DS-EKSGAARINEMFSIA---RRNAPAFVFVDEIDAIAGRHARKDPRR-R-------------------ATFEALIAQLD 297 (686)
Q Consensus 242 ~~-~~~~~~~vr~lF~~A---k~~~P~ILfIDEiDal~~~~~~~~~e~-~-------------------~~l~~LL~~ld 297 (686)
.. .+.... ++.+|..| +...||||||||+|++++++....... . ...+.++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 77 455554 99999999 788899999999999987654321100 0 11234566665
Q ss_pred CCcccCCcccccccccEEEEEecCCCCCCccccccCCccce--EEEeCCC--CHHHHHHHHHHHhcCCCccccccHHHHH
Q 005643 298 GDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDR--RLYIGLP--DAKQRVQIFDVHSAGKQLAEDVNFEELV 373 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~--~I~v~~P--d~~eR~~Il~~~l~~~~l~~dvdl~~La 373 (686)
..... ....|+|++|||+++.+|++++||||||+ .+.++.| +.++|.+|++.+.. .|++.++
T Consensus 182 ~~~~~-------~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a 247 (456)
T 2c9o_A 182 KERVE-------AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVAN 247 (456)
T ss_dssp HTTCC-------TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC
T ss_pred hccCC-------CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHH
Confidence 32111 12336666999999999999999999999 6677777 45788888875542 2688999
Q ss_pred HhccCCCHHHHHHHHHH
Q 005643 374 FRTVGFSGADIRNLVNE 390 (686)
Q Consensus 374 ~~t~G~sgadL~~lv~e 390 (686)
..+.| |+||.++|+.
T Consensus 248 ~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 248 ARPQG--GQDILSMMGQ 262 (456)
T ss_dssp -----------------
T ss_pred HhCCC--hhHHHHHHhh
Confidence 99999 9999999975
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=4.4e-22 Score=214.48 Aligned_cols=220 Identities=19% Similarity=0.267 Sum_probs=165.9
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCccccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTD 242 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s~~~~ 242 (686)
.+..+|++++|++++++.+..+...+... ..+++++||+||||||||++|+++|++++. |++.++|..+..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 45567999999999999988888777654 344689999999999999999999999874 888888776432
Q ss_pred hh--------------------------------------------------hhHHHHHHHHHHHHHh---------cCC
Q 005643 243 SE--------------------------------------------------KSGAARINEMFSIARR---------NAP 263 (686)
Q Consensus 243 ~~--------------------------------------------------~~~~~~vr~lF~~Ak~---------~~P 263 (686)
.. +.....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 21 0112334555544432 126
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec-----------CCCCCCcccccc
Q 005643 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT-----------NRPDELDLEFVR 332 (686)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT-----------N~p~~LD~aLlr 332 (686)
+||||||+|.+.. ..++.|+..++.... +++++++. |.+..++++|++
T Consensus 191 ~vl~IDEi~~l~~----------~~~~~L~~~le~~~~-----------~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s 249 (368)
T 3uk6_A 191 GVLFIDEVHMLDI----------ESFSFLNRALESDMA-----------PVLIMATNRGITRIRGTSYQSPHGIPIDLLD 249 (368)
T ss_dssp CEEEEESGGGSBH----------HHHHHHHHHTTCTTC-----------CEEEEEESCSEEECBTSSCEEETTCCHHHHT
T ss_pred ceEEEhhccccCh----------HHHHHHHHHhhCcCC-----------CeeeeecccceeeeeccCCCCcccCCHHHHh
Confidence 8999999999842 356777777755322 24444443 357889999999
Q ss_pred CCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Q 005643 333 PGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDV 411 (686)
Q Consensus 333 pgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 411 (686)
||.. +.+++|+.+++.+|++.++...... .+..+..++..+.+.+++++.++++.|...|..++...|+.+++.+|
T Consensus 250 --R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a 326 (368)
T 3uk6_A 250 --RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRV 326 (368)
T ss_dssp --TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred --hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 9965 8999999999999999877643322 23347888888885699999999999999999999999999999999
Q ss_pred HHHH
Q 005643 412 LDKQ 415 (686)
Q Consensus 412 l~~~ 415 (686)
+...
T Consensus 327 ~~~~ 330 (368)
T 3uk6_A 327 YSLF 330 (368)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 8753
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=8.9e-22 Score=206.96 Aligned_cols=225 Identities=15% Similarity=0.134 Sum_probs=168.4
Q ss_pred ccc-ceecCcccHHHHHHHHHHhCCchhhhhhCCc---cCceEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEEeC
Q 005643 169 MYK-EVVLGGDVWDLLDELMIYMGNPMQYYERGVQ---FVRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFASG 237 (686)
Q Consensus 169 ~f~-dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~---~p~gvLL~GPPGTGKT~LAralA~e~-------g~~fi~is~ 237 (686)
.++ +|+|++++++.|.+++..+..+..+...|.. .+.++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 344 7999999999999999987777777776654 45579999999999999999999987 348999999
Q ss_pred ccccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 238 AEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 238 s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
+++... .+.....+..+|..+ .++||||||+|.+.+.+. ++......++.|+..|+... .+++|
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~-~~~~~~~~~~~Ll~~l~~~~-----------~~~~~ 172 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDN-ERDYGQEAIEILLQVMENNR-----------DDLVV 172 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC----CCTHHHHHHHHHHHHHCT-----------TTCEE
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCC-cccccHHHHHHHHHHHhcCC-----------CCEEE
Confidence 998776 566667788888877 468999999999975432 22234567788888887643 23788
Q ss_pred EEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcccc-ccHHHHHHh-------ccCCCHHH
Q 005643 317 ICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAED-VNFEELVFR-------TVGFSGAD 383 (686)
Q Consensus 317 IaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~La~~-------t~G~sgad 383 (686)
|++||.++ .++|+|++ ||+..++|++|+.+++.+|++.++......-+ ..+..++.. ....++++
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~ 250 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARS 250 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHH
Confidence 89988654 35799999 99999999999999999999988875543322 224555554 22335899
Q ss_pred HHHHHHHHHHHHHHh----CCCcccHHHHHH
Q 005643 384 IRNLVNESGIMSVRK----GHSKIQQQDIVD 410 (686)
Q Consensus 384 L~~lv~eA~~~A~r~----~~~~It~~dl~~ 410 (686)
+.++++.|...+..+ ....++.+++..
T Consensus 251 l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~ 281 (309)
T 3syl_A 251 IRNALDRARLRQANRLFTASSGPLDARALST 281 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CEEHHHHHE
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHhh
Confidence 999999998766554 345567666543
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=1.6e-20 Score=200.15 Aligned_cols=223 Identities=15% Similarity=0.147 Sum_probs=168.8
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~ 244 (686)
..+.+|++++|.+++++.+...+...+.+ ...+.++||+||||||||++|+++|++++.+|+.++|..+...
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~- 94 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS- 94 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH-
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch-
Confidence 44568999999999888888877765322 2456789999999999999999999999999999999876532
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCc-------ccccccccEEEE
Q 005643 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGI-------DRFSLRQAVIFI 317 (686)
Q Consensus 245 ~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~-------~~~~~~~~ViVI 317 (686)
..+...+.. ...+++|||||||.+.. ...+.|+..|+......-. .......++++|
T Consensus 95 ----~~~~~~~~~--~~~~~vl~lDEi~~l~~----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 95 ----GDLAAILTN--LSEGDILFIDEIHRLSP----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ----HHHHHHHHT--CCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ----hHHHHHHHh--ccCCCEEEEechhhcCH----------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 123333332 24578999999999842 3556677777654321100 000011258999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
++||+...++++|++ ||+..+.+++|+.+++..+++.++...... .+..+..++..+.| +++++.++++.+...+.
T Consensus 159 ~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 159 GATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFAD 235 (338)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHH
T ss_pred EeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999887654433 23346777875555 78999999999988888
Q ss_pred HhCCCcccHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~ 414 (686)
..+...|+.+++..++..
T Consensus 236 ~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 236 VNDEEIITEKRANEALNS 253 (338)
T ss_dssp HTTCSEECHHHHHHHHHH
T ss_pred hhcCCccCHHHHHHHHHH
Confidence 888888999999888875
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=1.4e-19 Score=187.60 Aligned_cols=203 Identities=19% Similarity=0.249 Sum_probs=141.2
Q ss_pred ccceecCcccHHHHHH----HHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch--
Q 005643 170 YKEVVLGGDVWDLLDE----LMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-- 243 (686)
Q Consensus 170 f~dvvG~~e~k~~L~e----lv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-- 243 (686)
...++|.++..+.+.. ++..++ ..+...+.++||+||||||||++|+++|++.+.+|+.+++++....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCc
Confidence 4567777654333333 333333 2235678899999999999999999999999999999988763322
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 005643 244 EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (686)
Q Consensus 244 ~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (686)
.......++.+|..+....++||||||+|.+.+.+..+.......++.|...+++.... ..+++||+|||.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~--------~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQ--------GRKLLIIGTTSRK 177 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCST--------TCEEEEEEEESCH
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCC--------CCCEEEEEecCCh
Confidence 23344568899999988889999999999997654433333455666666666654321 2358999999999
Q ss_pred CCCcc-ccccCCccceEEEeCCCCH-HHHHHHHHHHhcCCCccccccHHHHHHhccCC----CHHHHHHHHHHHH
Q 005643 324 DELDL-EFVRPGRIDRRLYIGLPDA-KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGF----SGADIRNLVNESG 392 (686)
Q Consensus 324 ~~LD~-aLlrpgRFd~~I~v~~Pd~-~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~----sgadL~~lv~eA~ 392 (686)
+.+++ .+.+ ||+..+.+|+++. ++...++.. ...+ .+.++..++..+.|+ +.+++.++++.|.
T Consensus 178 ~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 178 DVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp HHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred hhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 99988 5555 9998888876654 444444433 2233 345688899998887 5667777776554
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.81 E-value=2.8e-19 Score=188.94 Aligned_cols=224 Identities=17% Similarity=0.166 Sum_probs=163.4
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchh
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 244 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~ 244 (686)
..+.+|++++|.+++++.+...+...... ...+.++||+||||||||++|++++++++.+++.++|+.+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~- 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP- 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH-
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh-
Confidence 34568999999998888887776654321 2356789999999999999999999999999999999887542
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccC----C---cccccccccEEEE
Q 005643 245 KSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERT----G---IDRFSLRQAVIFI 317 (686)
Q Consensus 245 ~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~----~---~~~~~~~~~ViVI 317 (686)
..+...|..+ ...+++|||||+|.+.. ...+.|+..++...... + ........++++|
T Consensus 78 ----~~l~~~l~~~-~~~~~~l~lDEi~~l~~----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 78 ----GDLAAILANS-LEEGDILFIDEIHRLSR----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----HHHHHHHTTT-CCTTCEEEETTTTSCCH----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----HHHHHHHHHh-ccCCCEEEEECCccccc----------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1122223221 24578999999998842 23445555555432100 0 0000011358999
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
++||.+..+++++.+ ||+..+.+++|+.+++..+++.++...... .+..+..++..+.| +++.+.++++.+...|.
T Consensus 143 ~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 143 GATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTST
T ss_pred EeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 999999999999998 998899999999999999999887654332 22346788888765 67899999999887776
Q ss_pred HhCCCcccHHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~~ 414 (686)
..+...|+.+++..++..
T Consensus 220 ~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA 237 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH
Confidence 667778999998887765
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.81 E-value=1.4e-19 Score=189.37 Aligned_cols=241 Identities=20% Similarity=0.261 Sum_probs=160.3
Q ss_pred cceecCcccHHHHHHHHHH-hCCchhhhh-hCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch--hh-
Q 005643 171 KEVVLGGDVWDLLDELMIY-MGNPMQYYE-RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EK- 245 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~-l~~p~~~~~-~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~--~~- 245 (686)
++|+|++++++.+...+.. +..+..... .+...+.++||+||||||||++|+++|+.++.+++.++|+++... .+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3589999888887766543 121111110 112457899999999999999999999999999999999998763 22
Q ss_pred hHHHHHHHHHHHH-----HhcCCeEEEEccchhhhccCCCC--ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 246 SGAARINEMFSIA-----RRNAPAFVFVDEIDAIAGRHARK--DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 246 ~~~~~vr~lF~~A-----k~~~P~ILfIDEiDal~~~~~~~--~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
.....++.+|..+ ....++||||||+|.+....... +.......+.|+..|++........ .....++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~-~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG-MVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE-EEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc-cccCCcEEEEE
Confidence 1234466666533 11236899999999997554222 2223345778888888642111000 11234578888
Q ss_pred e----cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHh-------------cCCCc-cccccHHHHHHhcc---
Q 005643 319 A----TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS-------------AGKQL-AEDVNFEELVFRTV--- 377 (686)
Q Consensus 319 a----TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l-------------~~~~l-~~dvdl~~La~~t~--- 377 (686)
+ ++.+..+++++++ ||+..+.|++|+.+++.+|++.++ .+..+ -++..+..|+..+.
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 8 5678899999998 999999999999999999998311 11111 12223566776652
Q ss_pred ----CCCHHHHHHHHHHHHHHHHH-----hCCC-cccHHHHHHHHHH
Q 005643 378 ----GFSGADIRNLVNESGIMSVR-----KGHS-KIQQQDIVDVLDK 414 (686)
Q Consensus 378 ----G~sgadL~~lv~eA~~~A~r-----~~~~-~It~~dl~~Al~~ 414 (686)
+.+.+++.++++.+...+.. .+.. .|+.+++.+++.+
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 56889999999887644332 2222 4899999888764
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=2.6e-19 Score=203.77 Aligned_cols=233 Identities=19% Similarity=0.215 Sum_probs=150.3
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch--
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-- 243 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-- 243 (686)
....++|++|.+++++.+.+.+..-.-. ... .+..+||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 3455678999999998887655431111 011 46689999999999999999999999999999998875431
Q ss_pred --------hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccc----cccc
Q 005643 244 --------EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDR----FSLR 311 (686)
Q Consensus 244 --------~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~----~~~~ 311 (686)
.+.....+...|..+....| |+||||||.+.... .....+.|+..|+......-.+. ....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF------RGDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC---------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh------ccCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 12223446677777766665 99999999996432 12245778888876443221111 1112
Q ss_pred ccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC-----CCcc------ccccHHHHHHhcc-CC
Q 005643 312 QAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG-----KQLA------EDVNFEELVFRTV-GF 379 (686)
Q Consensus 312 ~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~-----~~l~------~dvdl~~La~~t~-G~ 379 (686)
.+++||+|||.++.++++|++ ||+ .|.++.|+.+++.+|++.|+.. ..+. .+..+..++.... ..
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 568999999999999999999 995 7999999999999999987621 1111 1223455555333 23
Q ss_pred CHHHHHHH----HHHHHHHHHHh--CCCcccHHHHHHHHHH
Q 005643 380 SGADIRNL----VNESGIMSVRK--GHSKIQQQDIVDVLDK 414 (686)
Q Consensus 380 sgadL~~l----v~eA~~~A~r~--~~~~It~~dl~~Al~~ 414 (686)
..++|++. |+.|+..+.+. +...|+.+++.+++..
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 44555554 44444444433 3446899998887753
No 39
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.77 E-value=8.7e-18 Score=180.72 Aligned_cols=222 Identities=14% Similarity=0.123 Sum_probs=158.5
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCc
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGA 238 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s 238 (686)
..+++++|.++..+.+.. ++... .....+.+++|+||||||||++|+++++++ +.++++++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~---~l~~~-----~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAE---VLAPA-----LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHH---TTGGG-----TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHH---HHHHH-----HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 455889998865555444 33221 112457799999999999999999999988 8899999988
Q ss_pred cccchhh-----------------h-HHHHHHHHHHHHHh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCC
Q 005643 239 EFTDSEK-----------------S-GAARINEMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGD 299 (686)
Q Consensus 239 ~~~~~~~-----------------~-~~~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~ 299 (686)
....... . .......++..... ..|+||||||+|.+...+ .....+..++..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-----~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-----GGQDLLYRITRINQEL 162 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-----THHHHHHHHHHGGGCC
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-----CCChHHHhHhhchhhc
Confidence 7543210 0 11224445554443 348899999999996421 1345566666665543
Q ss_pred cccCCcccccccccEEEEEecCCC---CCCccccccCCccce-EEEeCCCCHHHHHHHHHHHhcC----CCccccccHHH
Q 005643 300 KERTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDR-RLYIGLPDAKQRVQIFDVHSAG----KQLAEDVNFEE 371 (686)
Q Consensus 300 ~~~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRFd~-~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~ 371 (686)
.. ..++++|++||.+ +.+++++.+ ||.. .+.+++|+.+++.+|++.++.. ..+. +..+..
T Consensus 163 ~~---------~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~ 230 (387)
T 2v1u_A 163 GD---------RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPL 230 (387)
T ss_dssp --------------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHH
T ss_pred CC---------CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHH
Confidence 20 1247899999987 778999998 8874 8999999999999999987653 2333 233667
Q ss_pred HHHhcc---CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 372 LVFRTV---GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 372 La~~t~---G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
++..+. | +++.+.++++.|...|..++...|+.+++..|+.+.
T Consensus 231 l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 231 CAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 777766 5 678889999999998888888899999999998875
No 40
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=1e-19 Score=200.79 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=78.2
Q ss_pred cceecCcccHHHHHHHHHH-hCCchhhhhhCC-ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch--hh-
Q 005643 171 KEVVLGGDVWDLLDELMIY-MGNPMQYYERGV-QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EK- 245 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~-l~~p~~~~~~g~-~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~--~~- 245 (686)
++|+|++++|+.|...+.. ++.+..+..++. .+++++||+||||||||++|+++|+.++.+|+.++++.+.+. .+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4789999999988777643 333333333332 357899999999999999999999999999999999998874 34
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe-cCCCC
Q 005643 246 SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA-TNRPD 324 (686)
Q Consensus 246 ~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa-TN~p~ 324 (686)
.....++.+|..|... +++||+|.+... ..+...+.++++|+.+||++..... | +++ ||+|+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~--~~~~~e~rvl~~LL~~~dg~~~~~~---------v--~a~~TN~~~ 157 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR--AEDVAEERILDALLPPAKNQWGEVE---------N--HDSHSSTRQ 157 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc--chhhHHHHHHHHHHHHhhccccccc---------c--ccccccCHH
Confidence 3578899999998775 458999887533 2233456789999999999765322 2 455 99999
Q ss_pred CCccccccCCccceEEEeCCCCHH-HHHHHHHH
Q 005643 325 ELDLEFVRPGRIDRRLYIGLPDAK-QRVQIFDV 356 (686)
Q Consensus 325 ~LD~aLlrpgRFd~~I~v~~Pd~~-eR~~Il~~ 356 (686)
.||+||+||||||+.|++++|+.. .|.+|+..
T Consensus 158 ~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 158 AFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 999999999999999999999988 78888753
No 41
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.76 E-value=9.1e-18 Score=178.64 Aligned_cols=223 Identities=19% Similarity=0.169 Sum_probs=152.4
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch-hhh
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKS 246 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~-~~~ 246 (686)
..+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++...... ...
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3567899998776655443321 2479999999999999999999999999999988532211 000
Q ss_pred HHH---HHHHHHHHHHhcC---CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 247 GAA---RINEMFSIARRNA---PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 247 ~~~---~vr~lF~~Ak~~~---P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
+.. .....| ..... .+||||||+|.+.. ...+.|+..|+...............+++||+|+
T Consensus 90 g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~~----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~ 157 (331)
T 2r44_A 90 GTMIYNQHKGNF--EVKKGPVFSNFILADEVNRSPA----------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQ 157 (331)
T ss_dssp EEEEEETTTTEE--EEEECTTCSSEEEEETGGGSCH----------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEE
T ss_pred CceeecCCCCce--EeccCcccccEEEEEccccCCH----------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEec
Confidence 000 000000 00112 37999999998842 3556677776653222111112234457888888
Q ss_pred CCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCC------------------------ccccccHHH
Q 005643 321 NRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ------------------------LAEDVNFEE 371 (686)
Q Consensus 321 N~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~------------------------l~~dvdl~~ 371 (686)
|..+ .+++++++ ||+.++.++.|+.+++.+|++.++.... +.++ .+..
T Consensus 158 np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~-~~~~ 234 (331)
T 2r44_A 158 NPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES-LEKY 234 (331)
T ss_dssp CTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH-HHHH
T ss_pred CCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH-HHHH
Confidence 8543 38999999 9998999999999999999998875431 1111 1233
Q ss_pred HHHh-------------------ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhc
Q 005643 372 LVFR-------------------TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 419 (686)
Q Consensus 372 La~~-------------------t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~~~~ 419 (686)
++.. ..|.|++.+.++++.|...|..+++..|+.+|+.+++..++.++
T Consensus 235 i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 235 IIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 3321 12669999999999999999999999999999999999887544
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.75 E-value=7.5e-18 Score=182.00 Aligned_cols=225 Identities=18% Similarity=0.252 Sum_probs=146.6
Q ss_pred eecCcccHHHHHHHHHHhCCchhhh---hhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch--hhhH
Q 005643 173 VVLGGDVWDLLDELMIYMGNPMQYY---ERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--EKSG 247 (686)
Q Consensus 173 vvG~~e~k~~L~elv~~l~~p~~~~---~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~--~~~~ 247 (686)
|+|++++++.+...+.......... .....++.++||+||||||||++|+++|+.++.||+.++|+++... .+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 6899998888877664211111100 0112367899999999999999999999999999999999998765 2332
Q ss_pred -HHHHHHHHHHH----HhcCCeEEEEccchhhhccCCCCC----hhHHHHHHHHHHHhcCCcccC---Ccc-------cc
Q 005643 248 -AARINEMFSIA----RRNAPAFVFVDEIDAIAGRHARKD----PRRRATFEALIAQLDGDKERT---GID-------RF 308 (686)
Q Consensus 248 -~~~vr~lF~~A----k~~~P~ILfIDEiDal~~~~~~~~----~e~~~~l~~LL~~ld~~~~~~---~~~-------~~ 308 (686)
...++.+|..+ ....++||||||+|.+...+.+.+ ......++.|+..|++....- +.. ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 34567777765 344578999999999976543321 223347899999999542110 000 01
Q ss_pred cccccEEEEEecCCC----------CC-----------------------------------CccccccCCccceEEEeC
Q 005643 309 SLRQAVIFICATNRP----------DE-----------------------------------LDLEFVRPGRIDRRLYIG 343 (686)
Q Consensus 309 ~~~~~ViVIaaTN~p----------~~-----------------------------------LD~aLlrpgRFd~~I~v~ 343 (686)
....++++|+++|.. .. +.|+|+. ||+..+.++
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 123445666666642 11 6788887 999999999
Q ss_pred CCCHHHHHHHHHH----Hh-------cCCCcc---ccccHHHHHH--hccCCCHHHHHHHHHHHHHHHHHhC
Q 005643 344 LPDAKQRVQIFDV----HS-------AGKQLA---EDVNFEELVF--RTVGFSGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 344 ~Pd~~eR~~Il~~----~l-------~~~~l~---~dvdl~~La~--~t~G~sgadL~~lv~eA~~~A~r~~ 399 (686)
+|+.+++.+|++. .+ ...... .+..+..|+. ....+..++|+++++.+...+..+.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999999875 11 111111 1122455664 3345566888888888877666543
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=5.8e-18 Score=179.45 Aligned_cols=204 Identities=15% Similarity=0.175 Sum_probs=136.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS 243 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~ 243 (686)
+..+.+|++++|++++++.|...+. ....|..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC--
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC--
Confidence 4566899999999988777776655 124567889999999999999999999999999999987754
Q ss_pred hhhHHHHHHHHHHHHHhc-----CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 244 EKSGAARINEMFSIARRN-----APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 244 ~~~~~~~vr~lF~~Ak~~-----~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
...++..+...... .++||||||+|.+.++ ...+.|+..++... .++.+|+
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~---------~~~~~L~~~le~~~-----------~~~~iI~ 141 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA---------ESQRHLRSFMEAYS-----------SNCSIII 141 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH---------HHHHHHHHHHHHHG-----------GGCEEEE
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH---------HHHHHHHHHHHhCC-----------CCcEEEE
Confidence 22344433332222 5789999999999511 23455666555422 2368899
Q ss_pred ecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHh-------c--CCCccccccHHHHHHhccCCCHHHHHHHHH
Q 005643 319 ATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHS-------A--GKQLAEDVNFEELVFRTVGFSGADIRNLVN 389 (686)
Q Consensus 319 aTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l-------~--~~~l~~dvdl~~La~~t~G~sgadL~~lv~ 389 (686)
+||.+..+++++++ || ..+.|++|+.++|.+|++... . +..+.+...+..++..+.| +.+++.+.++
T Consensus 142 ~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~ 217 (324)
T 3u61_B 142 TANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELD 217 (324)
T ss_dssp EESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHH
T ss_pred EeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 99999999999999 99 479999999999877655432 1 2333321346778877655 3444444444
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 390 ESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 390 eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
.++ . ...|+.+++..++..
T Consensus 218 ~~~----~--~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 218 SYS----S--KGVLDAGILSLVTND 236 (324)
T ss_dssp HHG----G--GTCBCC---------
T ss_pred HHh----c--cCCCCHHHHHHHhCC
Confidence 433 2 235888888766543
No 44
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.75 E-value=3.5e-17 Score=161.13 Aligned_cols=206 Identities=18% Similarity=0.192 Sum_probs=142.6
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCcc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~ 239 (686)
..+.+|++++|.++.++.+.+.+. .. .+.+++|+||||||||++|+++++++ ..+++.++++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~---~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVE---RK---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHH---TT---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 345789999999877666665543 22 22359999999999999999999875 45688888776
Q ss_pred ccchhhhHHHHHHHHHHH--HHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 240 FTDSEKSGAARINEMFSI--ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 240 ~~~~~~~~~~~vr~lF~~--Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
..... .....+...... .....++||||||+|.+.. ...+.|+..++... .++.+|
T Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~l~~~l~~~~-----------~~~~~i 136 (226)
T 2chg_A 79 ERGID-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMYS-----------KSCRFI 136 (226)
T ss_dssp TTCHH-HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH----------HHHHHHHHHHHHTT-----------TTEEEE
T ss_pred ccChH-HHHHHHHHHhcccCCCccCceEEEEeChhhcCH----------HHHHHHHHHHHhcC-----------CCCeEE
Confidence 54321 111112111111 0124689999999999842 13445555554422 236888
Q ss_pred EecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 318 CATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 318 aaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
++||.+..+++++.+ ||. .+.+++|+.++..++++.++...... .+..+..++..+.| +++.+.++++.++..+
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 899999999999998 896 89999999999999999776532221 22346778877655 7777777777766543
Q ss_pred HhCCCcccHHHHHHHHH
Q 005643 397 RKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 397 r~~~~~It~~dl~~Al~ 413 (686)
..|+.+|+.+++.
T Consensus 212 ----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----EVVDADTIYQITA 224 (226)
T ss_dssp ----SCBCHHHHHHHHH
T ss_pred ----ceecHHHHHHHhc
Confidence 5799999988764
No 45
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.75 E-value=1.4e-17 Score=177.72 Aligned_cols=228 Identities=15% Similarity=0.184 Sum_probs=146.1
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC-------CeEEEeC
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-------PFVFASG 237 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-------~fi~is~ 237 (686)
.++.+|++++|++++++.+... ...+ .+.++||+||||||||++|+++++.++. +| +|
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~---~~~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~ 82 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLT---AVDP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SS 82 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHH---HHCG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CC
T ss_pred CCCCCchhccChHHHHHHHHHH---hhCC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccc---cc
Confidence 4567899999998766553221 1121 2346999999999999999999998862 32 22
Q ss_pred ccccc---------------------h-hhhHHHH------HHHHHHHHH---------hcCCeEEEEccchhhhccCCC
Q 005643 238 AEFTD---------------------S-EKSGAAR------INEMFSIAR---------RNAPAFVFVDEIDAIAGRHAR 280 (686)
Q Consensus 238 s~~~~---------------------~-~~~~~~~------vr~lF~~Ak---------~~~P~ILfIDEiDal~~~~~~ 280 (686)
..... . .+..... +...|..+. ...++||||||+|.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 21110 0 0000000 122222221 11368999999999842
Q ss_pred CChhHHHHHHHHHHHhcCCc--ccCCcccccccccEEEEEecCCCC-CCccccccCCccceEEEeCCC-CHHHHHHHHHH
Q 005643 281 KDPRRRATFEALIAQLDGDK--ERTGIDRFSLRQAVIFICATNRPD-ELDLEFVRPGRIDRRLYIGLP-DAKQRVQIFDV 356 (686)
Q Consensus 281 ~~~e~~~~l~~LL~~ld~~~--~~~~~~~~~~~~~ViVIaaTN~p~-~LD~aLlrpgRFd~~I~v~~P-d~~eR~~Il~~ 356 (686)
..++.|+..|+... ............++++|+|||..+ .++++|++ ||+.++.++.| +.+++.+|++.
T Consensus 159 ------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 159 ------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 24556666655421 001111112234689999999755 89999999 99999999999 67788788865
Q ss_pred Hh-------------------------------cCCCccccccHHHHHHhccC---CCHHHHHHHHHHHHHHHHHhCCCc
Q 005643 357 HS-------------------------------AGKQLAEDVNFEELVFRTVG---FSGADIRNLVNESGIMSVRKGHSK 402 (686)
Q Consensus 357 ~l-------------------------------~~~~l~~dvdl~~La~~t~G---~sgadL~~lv~eA~~~A~r~~~~~ 402 (686)
++ ....+.++ .+..|+....+ -+.+.+.++++.|...|..+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~ 309 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDGLRGELTLLRSARALAALEGATA 309 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSB
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 31 11122222 24445444333 267999999999999998889888
Q ss_pred ccHHHHHHHHHHHHHhcc
Q 005643 403 IQQQDIVDVLDKQLLEGM 420 (686)
Q Consensus 403 It~~dl~~Al~~~~~~~~ 420 (686)
|+.+|+.+|+..++.++.
T Consensus 310 v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 310 VGRDHLKRVATMALSHRL 327 (350)
T ss_dssp CCHHHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHhhcc
Confidence 999999999998876543
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.75 E-value=1.9e-17 Score=166.14 Aligned_cols=210 Identities=13% Similarity=0.136 Sum_probs=142.1
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~ 241 (686)
.+..+|+++++.+..+..+..+..+...+ .+.+++|+||||||||++|+++++++ +.++++++++++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 34578999998554455555555554432 45789999999999999999999876 4789999998876
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccE-EEEEec
Q 005643 242 DSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV-IFICAT 320 (686)
Q Consensus 242 ~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~V-iVIaaT 320 (686)
...... +.. ...+.+|||||+|.+... ... .+.|+..++..... ..+ +|++++
T Consensus 93 ~~~~~~-------~~~--~~~~~vliiDe~~~~~~~-----~~~---~~~l~~~l~~~~~~---------~~~~ii~~~~ 146 (242)
T 3bos_A 93 SISTAL-------LEG--LEQFDLICIDDVDAVAGH-----PLW---EEAIFDLYNRVAEQ---------KRGSLIVSAS 146 (242)
T ss_dssp GSCGGG-------GTT--GGGSSEEEEETGGGGTTC-----HHH---HHHHHHHHHHHHHH---------CSCEEEEEES
T ss_pred HHHHHH-------HHh--ccCCCEEEEeccccccCC-----HHH---HHHHHHHHHHHHHc---------CCCeEEEEcC
Confidence 543111 111 134789999999998532 111 22333333321111 113 444444
Q ss_pred CCCC---CCccccccCCccc--eEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005643 321 NRPD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIM 394 (686)
Q Consensus 321 N~p~---~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~ 394 (686)
+.+. .+++++.+ ||. ..+.+++|+.+++.++++.++...... .+..+..++..+.| +.+++.++++.+...
T Consensus 147 ~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 147 ASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKA 223 (242)
T ss_dssp SCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 4444 45678888 886 899999999999999999887543322 22346778887765 899999999999988
Q ss_pred HHHhCCCcccHHHHHHHHH
Q 005643 395 SVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 395 A~r~~~~~It~~dl~~Al~ 413 (686)
|..++ ..|+.+++.+++.
T Consensus 224 a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHT-CCCCHHHHHHHHT
T ss_pred HHHhC-CCCcHHHHHHHhh
Confidence 86555 4699999988763
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.74 E-value=1.8e-17 Score=175.98 Aligned_cols=199 Identities=17% Similarity=0.250 Sum_probs=133.0
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcccc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~ 241 (686)
.+..+|++++...........+...+..+ ...+.+++|+||||||||++|+++++++ +.+++++++.++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 35678999984333333344444444444 1346789999999999999999999988 8999999998875
Q ss_pred chhhh-HHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec
Q 005643 242 DSEKS-GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT 320 (686)
Q Consensus 242 ~~~~~-~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT 320 (686)
..... ........|.... ..++||||||+|.+.++ ......+..++..+.. . ...+|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~-----~~~~~~l~~~l~~~~~---~---------~~~iii~~~ 139 (324)
T 1l8q_A 78 QAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK-----ERTQIEFFHIFNTLYL---L---------EKQIILASD 139 (324)
T ss_dssp HHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC-----HHHHHHHHHHHHHHHH---T---------TCEEEEEES
T ss_pred HHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC-----hHHHHHHHHHHHHHHH---C---------CCeEEEEec
Confidence 44211 1111112233222 23789999999998532 1222223333332211 1 125677777
Q ss_pred CCCC---CCccccccCCccc--eEEEeCCCCHHHHHHHHHHHhcCC--CccccccHHHHHHhccCCCHHHHHHHHHHHHH
Q 005643 321 NRPD---ELDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAGK--QLAEDVNFEELVFRTVGFSGADIRNLVNESGI 393 (686)
Q Consensus 321 N~p~---~LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~ 393 (686)
+.+. .++++|++ ||+ ..+.+++ +.+++.+|++.++... .+.++ .+..|+..+ .+.+++.++++.+..
T Consensus 140 ~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~-~l~~l~~~~--g~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 140 RHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKE-VIDYLLENT--KNVREIEGKIKLIKL 213 (324)
T ss_dssp SCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHC--SSHHHHHHHHHHHHH
T ss_pred CChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 7766 68999998 996 6899999 9999999999887643 33333 378888888 478899999988765
Q ss_pred H
Q 005643 394 M 394 (686)
Q Consensus 394 ~ 394 (686)
.
T Consensus 214 ~ 214 (324)
T 1l8q_A 214 K 214 (324)
T ss_dssp H
T ss_pred c
Confidence 5
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.74 E-value=1.2e-17 Score=185.31 Aligned_cols=221 Identities=14% Similarity=0.212 Sum_probs=150.6
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCcc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~ 239 (686)
.+..+|++++..++....+..+.....++ .. +.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 45679999984333333444555555554 12 6789999999999999999999988 89999999988
Q ss_pred ccchhhhH-HHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 240 FTDSEKSG-AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 240 ~~~~~~~~-~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
+....... .......|.......++||||||+|.+.++ ......+..+++.+.. . ...+||+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~-----~~~q~~l~~~l~~l~~---~---------~~~iIit 233 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK-----TGVQTELFHTFNELHD---S---------GKQIVIC 233 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC-----HHHHHHHHHHHHHHHT---T---------TCEEEEE
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC-----hHHHHHHHHHHHHHHH---C---------CCeEEEE
Confidence 75432111 111112233333336899999999999632 1122222233333221 1 1145555
Q ss_pred ecCCCCC---CccccccCCccc--eEEEeCCCCHHHHHHHHHHHhcC--CCccccccHHHHHHhccCCCHHHHHHHHHHH
Q 005643 319 ATNRPDE---LDLEFVRPGRID--RRLYIGLPDAKQRVQIFDVHSAG--KQLAEDVNFEELVFRTVGFSGADIRNLVNES 391 (686)
Q Consensus 319 aTN~p~~---LD~aLlrpgRFd--~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~La~~t~G~sgadL~~lv~eA 391 (686)
+.+.+.. ++++|++ ||. ..+.+++|+.++|.+|++..+.. ..+.++ .+..|+..+.| +.+++.++++.+
T Consensus 234 t~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~ 309 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_dssp ESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Confidence 5555554 7899998 996 78999999999999999987753 334443 37788888765 899999999999
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHH
Q 005643 392 GIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
...|...+. .|+.+++.+++.+.
T Consensus 310 ~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 310 LVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred HHHHHHhCC-CCCHHHHHHHHHHH
Confidence 988876664 69999998887653
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.74 E-value=2.3e-17 Score=183.38 Aligned_cols=205 Identities=18% Similarity=0.235 Sum_probs=148.1
Q ss_pred CCcccccceecCcccH---HHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 165 DTKSMYKEVVLGGDVW---DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k---~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
..+.+|++++|++.+. ..|...+.. . ...++||+||||||||++|+++|+.++.+|+.+++....
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~---~---------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~ 87 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEA---G---------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG 87 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHH---T---------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHc---C---------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 3457899999999877 444444432 2 125899999999999999999999999999999875432
Q ss_pred chhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEE
Q 005643 242 DSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFI 317 (686)
Q Consensus 242 ~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVI 317 (686)
...++.+|..+.. ..++||||||||.+... ..+.|+..++.. .+++|
T Consensus 88 ------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~----------~q~~LL~~le~~-------------~v~lI 138 (447)
T 3pvs_A 88 ------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS----------QQDAFLPHIEDG-------------TITFI 138 (447)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------CCHHHHHTT-------------SCEEE
T ss_pred ------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH----------HHHHHHHHHhcC-------------ceEEE
Confidence 2345555555543 46799999999998432 345577777652 15666
Q ss_pred Eec--CCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC-------Cc-cccccHHHHHHhccCCCHHHHHHH
Q 005643 318 CAT--NRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-------QL-AEDVNFEELVFRTVGFSGADIRNL 387 (686)
Q Consensus 318 aaT--N~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-------~l-~~dvdl~~La~~t~G~sgadL~~l 387 (686)
++| |....++++|++ |+. .+.+++|+.+++..+++..+... .. ..+..+..|+..+.| +.+++.++
T Consensus 139 ~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~ 214 (447)
T 3pvs_A 139 GATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNT 214 (447)
T ss_dssp EEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHH
T ss_pred ecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHH
Confidence 666 444589999999 885 78899999999999999887641 11 122346778888655 78899999
Q ss_pred HHHHHHHHHHh--CCCcccHHHHHHHHHH
Q 005643 388 VNESGIMSVRK--GHSKIQQQDIVDVLDK 414 (686)
Q Consensus 388 v~eA~~~A~r~--~~~~It~~dl~~Al~~ 414 (686)
++.+...+... +...||.+++.+++.+
T Consensus 215 Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 215 LEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 99988877533 5567999999888764
No 50
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=2.2e-17 Score=173.40 Aligned_cols=210 Identities=18% Similarity=0.220 Sum_probs=138.8
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhH
Q 005643 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG 247 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~ 247 (686)
++++|++.+++.+...+........+ ..++..++||+||||||||++|+++|+.+ +.+++.++|+.+.......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSC---TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCC---CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 45788888877777666543211000 12334579999999999999999999987 5679999999876542110
Q ss_pred H-----------HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 248 A-----------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 248 ~-----------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
. .....+........++||||||+|.+.. ..++.|+..|+...............++++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~----------~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP----------DVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH----------HHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH----------HHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 0 0001233333445568999999999842 356777777765432211111112235789
Q ss_pred EEecCC--------------------------CCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC---------
Q 005643 317 ICATNR--------------------------PDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK--------- 361 (686)
Q Consensus 317 IaaTN~--------------------------p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~--------- 361 (686)
|+|||. ...++++|++ ||+..+.+++|+.+++..|++.++...
T Consensus 164 I~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~ 241 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRI 241 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTC
T ss_pred EEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999998 4468888987 999999999999999999998776431
Q ss_pred Cc-cccccHHHHHHhcc--CCCHHHHHHHHHHHHHHH
Q 005643 362 QL-AEDVNFEELVFRTV--GFSGADIRNLVNESGIMS 395 (686)
Q Consensus 362 ~l-~~dvdl~~La~~t~--G~sgadL~~lv~eA~~~A 395 (686)
.. -.+..+..|+.... ..+.++|.++++.+...+
T Consensus 242 ~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 242 SLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp EEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred EEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 11 11223566666554 567788888888776544
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.72 E-value=2.3e-16 Score=156.97 Aligned_cols=203 Identities=21% Similarity=0.277 Sum_probs=145.2
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCe------------
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPF------------ 232 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~f------------ 232 (686)
..+.+|++++|.++..+.|...+.. ...+..++|+||||||||++|++++++.+...
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3456799999998777776665543 12356899999999999999999998875422
Q ss_pred ------------EEEeCccccchhhhHHHHHHHHHHHHH----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005643 233 ------------VFASGAEFTDSEKSGAARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 233 ------------i~is~s~~~~~~~~~~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~l 296 (686)
+.+++.. ......++.++..+. ...|.+|+|||+|.+.. ..++.|+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~----------~~~~~l~~~l 150 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS-----RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------HSFNALLKTL 150 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC-----GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH----------HHHHHHHHHH
T ss_pred HHHHhccCCcceEEecCcc-----cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH----------HHHHHHHHHH
Confidence 2221111 122334556665543 23479999999998832 3556777777
Q ss_pred cCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHh
Q 005643 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFR 375 (686)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~ 375 (686)
+... .++.+|++||.+..+++++.+ |+ ..+.+++|+.++..++++.++...... ++..+..++..
T Consensus 151 ~~~~-----------~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~ 216 (250)
T 1njg_A 151 EEPP-----------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 216 (250)
T ss_dssp HSCC-----------TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred hcCC-----------CceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 6532 237889999999999999988 76 689999999999999999877543322 23346788888
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 376 TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 376 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+.| +++.+.++++.|... +...|+.+++.+++
T Consensus 217 ~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 217 AEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred cCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 877 899999999887533 33479999987764
No 52
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=5.2e-17 Score=175.27 Aligned_cols=214 Identities=16% Similarity=0.183 Sum_probs=151.5
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----------CCCeEEEe
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----------GLPFVFAS 236 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----------g~~fi~is 236 (686)
..+++++|.++..+.+...+..... ...+++++|+||||||||++|+++++++ +.++++++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 3458899998776666665543221 1356799999999999999999999987 89999999
Q ss_pred Ccccc-chhhh-------------------HHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHH-HHHHHHH
Q 005643 237 GAEFT-DSEKS-------------------GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRAT-FEALIAQ 295 (686)
Q Consensus 237 ~s~~~-~~~~~-------------------~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~-l~~LL~~ 295 (686)
|.... ..... ....+..++..+.... +||||||+|.+..... ... +..|+..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~------~~~~l~~l~~~ 161 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG------GDIVLYQLLRS 161 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT------SHHHHHHHHTS
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC------CceeHHHHhcC
Confidence 87654 21100 0122444444444443 4999999999964310 112 3344332
Q ss_pred hcCCcccCCcccccccccEEEEEecCCC---CCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC----CCcccccc
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG----KQLAEDVN 368 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvd 368 (686)
. .++.||++||.+ +.+++++++ ||...+.+++|+.++..+|++.++.. ..+. +..
T Consensus 162 ~---------------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~ 223 (384)
T 2qby_B 162 D---------------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEI 223 (384)
T ss_dssp S---------------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHH
T ss_pred C---------------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHH
Confidence 2 137899999987 678999988 98789999999999999999987652 2233 233
Q ss_pred HHHHHHhccC--CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 369 FEELVFRTVG--FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 369 l~~La~~t~G--~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
+..++..+.+ -+.+.+.++++.|...|. +...|+.+++..++++..
T Consensus 224 ~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 224 LSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 6677777662 256778889998888775 567899999999988753
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.70 E-value=6.7e-16 Score=165.14 Aligned_cols=222 Identities=19% Similarity=0.202 Sum_probs=156.9
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhh
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS 246 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~ 246 (686)
..+|++++|++.+++.+...+..-+.+ ..++..++|+||||||||+||+++|++++.++...++..+...
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~--- 90 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--- 90 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH---
Confidence 458999999987777766655432211 2356789999999999999999999999999988887665432
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc----CCc--ccc-cccccEEEEEe
Q 005643 247 GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER----TGI--DRF-SLRQAVIFICA 319 (686)
Q Consensus 247 ~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~----~~~--~~~-~~~~~ViVIaa 319 (686)
..+..++.. ...++|+||||++.+.. ...+.|+..+...... .+. ... .....+.++++
T Consensus 91 --~~l~~~~~~--~~~~~v~~iDE~~~l~~----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 91 --GDMAAILTS--LERGDVLFIDEIHRLNK----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp --HHHHHHHHH--CCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred --HHHHHHHHH--ccCCCEEEEcchhhcCH----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 112333322 23467999999998852 1223334334322110 000 000 01124677889
Q ss_pred cCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 005643 320 TNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 320 TN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~ 398 (686)
||++..|++++++ ||...+.+++|+.+++.+|++......... ++..+..++.++.| +++.+.++++.+...|..+
T Consensus 157 t~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~ 233 (334)
T 1in4_A 157 TTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVV 233 (334)
T ss_dssp ESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHc
Confidence 9999999999999 999889999999999999999776543332 22236788888777 6789999999998888888
Q ss_pred CCCcccHHHHHHHHHHH
Q 005643 399 GHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 399 ~~~~It~~dl~~Al~~~ 415 (686)
+...|+.+++.+|++..
T Consensus 234 ~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 234 KADRINTDIVLKTMEVL 250 (334)
T ss_dssp TCSSBCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHh
Confidence 88889999999999874
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=4.3e-16 Score=167.14 Aligned_cols=222 Identities=16% Similarity=0.155 Sum_probs=155.2
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh------CCCeEEEeCccc
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES------GLPFVFASGAEF 240 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~------g~~fi~is~s~~ 240 (686)
...+++++|.++..+.|. .++.... ....+..++|+||||||||++++++++.+ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~---~~l~~~~-----~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIA---SILAPLY-----REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHH---HSSGGGG-----GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHH---HHHHHHH-----cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 455688999885444444 4443221 12356789999999999999999999988 899999998754
Q ss_pred cchh-----------------h-hHHHHHHHHHHHHHhcC-CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc
Q 005643 241 TDSE-----------------K-SGAARINEMFSIARRNA-PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE 301 (686)
Q Consensus 241 ~~~~-----------------~-~~~~~vr~lF~~Ak~~~-P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~ 301 (686)
.... + ........++....... |+||+|||+|.+..... ...+..++..++...
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~------~~~l~~l~~~~~~~~- 160 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN------DDILYKLSRINSEVN- 160 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC------STHHHHHHHHHHSCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc------CHHHHHHhhchhhcC-
Confidence 3210 0 01222444555554433 89999999999964311 125667777765431
Q ss_pred cCCcccccccccEEEEEecCCC---CCCccccccCCccc-eEEEeCCCCHHHHHHHHHHHhcC----CCccccccHHHHH
Q 005643 302 RTGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAG----KQLAEDVNFEELV 373 (686)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRFd-~~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~La 373 (686)
..++.+|++||.+ ..+++.+.+ ||. +.+.+++++.++..++++.++.. ..+. +..+..++
T Consensus 161 ---------~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~ 228 (386)
T 2qby_A 161 ---------KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCA 228 (386)
T ss_dssp ---------C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHH
T ss_pred ---------CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHH
Confidence 1247889999887 467888887 775 58999999999999999876542 2222 22356666
Q ss_pred Hhcc---CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 374 FRTV---GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 374 ~~t~---G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
..+. | +++.+.++++.|...|..++...|+.+++..|+.+..
T Consensus 229 ~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 229 ALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 6665 5 6778888999999988888888999999999988753
No 55
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=2.7e-16 Score=167.65 Aligned_cols=208 Identities=15% Similarity=0.157 Sum_probs=146.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC------CCeEEEeC
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG------LPFVFASG 237 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g------~~fi~is~ 237 (686)
+..+.+|++++|++++++.+... +... . +.++||+||||||||++|+++|++++ ..++.+++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~---l~~~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKT---LKSA--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHH---TTCT--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hcCCCCHHHhhCCHHHHHHHHHH---HhcC--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 45667899999999887766554 3332 1 23499999999999999999998854 46888888
Q ss_pred ccccchhhhHHHHHHHHHHHHH----------------hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcc
Q 005643 238 AEFTDSEKSGAARINEMFSIAR----------------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKE 301 (686)
Q Consensus 238 s~~~~~~~~~~~~vr~lF~~Ak----------------~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~ 301 (686)
++.... ..++..+.... ...+.||||||+|.+.. ...+.|+..|+....
T Consensus 98 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------~~~~~Ll~~le~~~~ 162 (353)
T 1sxj_D 98 SDERGI-----SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------DAQSALRRTMETYSG 162 (353)
T ss_dssp SSCCCH-----HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH----------HHHHHHHHHHHHTTT
T ss_pred ccccch-----HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH----------HHHHHHHHHHHhcCC
Confidence 775322 11111111111 12457999999999843 234666666665332
Q ss_pred cCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCC
Q 005643 302 RTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFS 380 (686)
Q Consensus 302 ~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~s 380 (686)
.+.+|++||.+..+++++++ |+. .+.+++|+.++...+++..+....+. ++..+..++..+.| +
T Consensus 163 -----------~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~ 227 (353)
T 1sxj_D 163 -----------VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-D 227 (353)
T ss_dssp -----------TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-C
T ss_pred -----------CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 25677788999999999998 885 89999999999999998876543322 23347788888776 6
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-cccHHHHHHHHH
Q 005643 381 GADIRNLVNESGIMSVRKGHS-KIQQQDIVDVLD 413 (686)
Q Consensus 381 gadL~~lv~eA~~~A~r~~~~-~It~~dl~~Al~ 413 (686)
.+.+.++++.++..+.+.+.. .|+.+++.+++.
T Consensus 228 ~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 228 LRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 777778888777766554433 699999876654
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=3.8e-17 Score=157.14 Aligned_cols=157 Identities=16% Similarity=0.272 Sum_probs=111.7
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEEe
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFAS 236 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~is 236 (686)
+.+|++++|.++ .++.+...+.. ..+.+++|+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~---~~~~l~~~l~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDE---EIRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHH---HHHHHHHHHTS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchH---HHHHHHHHHhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 457999999885 44455555544 246789999999999999999999986 78899999
Q ss_pred Cccccch---hhhHHHHHHHHHHHHH-hcCCeEEEEccchhhhccCCC-CChhHHHHHHHHHHHhcCCcccCCccccccc
Q 005643 237 GAEFTDS---EKSGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHAR-KDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (686)
Q Consensus 237 ~s~~~~~---~~~~~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~-~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (686)
+..+... .+.....++.++..+. ...++||||||+|.+...+.. ........+..+ ++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~---~~~------------- 149 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA---LAR------------- 149 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHH---HHT-------------
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh---hcc-------------
Confidence 8876532 3444556777777654 456889999999999643211 111112222222 222
Q ss_pred ccEEEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHH
Q 005643 312 QAVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIF 354 (686)
Q Consensus 312 ~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il 354 (686)
.++.+|++||.++ .+++++++ ||+ .+.+++|+.++|.+||
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 1267888888876 78999999 997 6999999999998875
No 57
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=1e-16 Score=181.38 Aligned_cols=222 Identities=18% Similarity=0.262 Sum_probs=141.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhC--CchhhhhhCC---ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMG--NPMQYYERGV---QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~--~p~~~~~~g~---~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s 238 (686)
+..+.+|+|++|.+++++.|.+++.... .+..|...|. ..++++||+||||||||++|+++|++++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4556799999999987777766654311 1112223332 3678999999999999999999999999999999999
Q ss_pred cccchhh-hH-H------HHHHHHHHHH-----HhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCc
Q 005643 239 EFTDSEK-SG-A------ARINEMFSIA-----RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGI 305 (686)
Q Consensus 239 ~~~~~~~-~~-~------~~vr~lF~~A-----k~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~ 305 (686)
++..... .. . ..+..+|..+ ....++||||||+|.+.... .. .++.|+..++...
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~----~~---~l~~L~~~l~~~~----- 179 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD----RG---GVGQLAQFCRKTS----- 179 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS----TT---HHHHHHHHHHHCS-----
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh----HH---HHHHHHHHHHhcC-----
Confidence 8765421 00 0 0022333333 23568999999999996421 11 2444555444321
Q ss_pred ccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhc--CCCccccccHHHHHHhccCCCHHH
Q 005643 306 DRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA--GKQLAEDVNFEELVFRTVGFSGAD 383 (686)
Q Consensus 306 ~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~--~~~l~~dvdl~~La~~t~G~sgad 383 (686)
..+++|+++.....+++ +. |+...+.|++|+.+++.++++..+. +..+.++ .+..|+..+.| |
T Consensus 180 ------~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G----d 244 (516)
T 1sxj_A 180 ------TPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG----D 244 (516)
T ss_dssp ------SCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT----C
T ss_pred ------CCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----c
Confidence 12555555544445543 44 4456899999999999999987654 3344433 47888888755 4
Q ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 384 IRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 384 L~~lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
++.+++.....+. +...|+.+++..++..
T Consensus 245 iR~~i~~L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 245 IRQVINLLSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp HHHHHHHHTHHHH--HSSCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCchHHHHHHHHh
Confidence 4444444333332 3456888888777664
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=6e-16 Score=182.77 Aligned_cols=220 Identities=17% Similarity=0.181 Sum_probs=154.6
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEEe
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFAS 236 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~is 236 (686)
+.+|++++|.++. ++.++..+... .+.++||+||||||||++|+++|..+ +..++.++
T Consensus 182 ~~~~d~~iGr~~~---i~~l~~~l~~~---------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKE---LERAIQVLCRR---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHH---HHHHHHHHTSS---------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHH---HHHHHHHHhcc---------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4579999998854 44455555433 46789999999999999999999986 56678888
Q ss_pred Cccccch---hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 005643 237 GAEFTDS---EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (686)
Q Consensus 237 ~s~~~~~---~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (686)
++.+... .+....+++.+|..+....++||||||+|.+.+.+.... ......+.|. ..... ..
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~-~~~~~~~~L~----~~l~~---------~~ 315 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-GQVDAANLIK----PLLSS---------GK 315 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS-CHHHHHHHHS----SCSSS---------CC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc-chHHHHHHHH----HHHhC---------CC
Confidence 7776532 355677899999999888899999999999976532211 1222222222 22211 23
Q ss_pred EEEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC------CCccccccHHHHHHhccC----
Q 005643 314 VIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG------KQLAEDVNFEELVFRTVG---- 378 (686)
Q Consensus 314 ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~------~~l~~dvdl~~La~~t~G---- 378 (686)
+.+|++||.++ .+|++|.| ||+ .+.|+.|+.++|.+||+.+... ..+. +..+..++..+.+
T Consensus 316 ~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~i~~ 391 (758)
T 1r6b_X 316 IRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYIND 391 (758)
T ss_dssp CEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCTT
T ss_pred eEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhccc
Confidence 78899998753 57899999 997 7999999999999999866532 2222 2234555555443
Q ss_pred -CCHHHHHHHHHHHHHHHHH----hCCCcccHHHHHHHHHHHH
Q 005643 379 -FSGADIRNLVNESGIMSVR----KGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 379 -~sgadL~~lv~eA~~~A~r----~~~~~It~~dl~~Al~~~~ 416 (686)
+.+..+..++++|+..+.. .+...|+.+|+..++.+..
T Consensus 392 ~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 392 RHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp SCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 5667888999988866654 2456799999999998753
No 59
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.68 E-value=9.6e-16 Score=165.23 Aligned_cols=220 Identities=15% Similarity=0.111 Sum_probs=154.7
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCc--eEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCcccc
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVR--GVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFT 241 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~--gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~~~ 241 (686)
..+++++|.++..+.+...+..... | ..+. .++|+||||||||++++++++.+ +.++++++|....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~-------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLR-------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHH-------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc-------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 4458899998766666555443211 1 2234 89999999999999999999988 6789999987654
Q ss_pred chhh------------------hHHHHHHHHHHHHH-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCccc
Q 005643 242 DSEK------------------SGAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKER 302 (686)
Q Consensus 242 ~~~~------------------~~~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~ 302 (686)
.... ........+..... ...|.||||||+|.+. ...++.|+..++.....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~----------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA----------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC----------HHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc----------hHHHHHHHHHHHhCCCC
Confidence 3110 01111222222222 2458999999999882 23566676666543210
Q ss_pred CCcccccccccEEEEEecCCC---CCCccccccCCccce-EEEeCCCCHHHHHHHHHHHhcC----CCccccccHHHHHH
Q 005643 303 TGIDRFSLRQAVIFICATNRP---DELDLEFVRPGRIDR-RLYIGLPDAKQRVQIFDVHSAG----KQLAEDVNFEELVF 374 (686)
Q Consensus 303 ~~~~~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRFd~-~I~v~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~La~ 374 (686)
...++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ..+ .+..+..++.
T Consensus 156 -------~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~ 225 (389)
T 1fnn_A 156 -------GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY-SEDILQMIAD 225 (389)
T ss_dssp -------SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS-CHHHHHHHHH
T ss_pred -------CcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHH
Confidence 00247889999988 678888887 8864 8999999999999999877643 222 2334677888
Q ss_pred hcc--------CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 375 RTV--------GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 375 ~t~--------G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
.+. +-.++.+.++++.|...|..++...|+.+++..++...
T Consensus 226 ~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 226 ITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 873 23678899999999999988888899999999998875
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.68 E-value=3.4e-16 Score=169.73 Aligned_cols=238 Identities=18% Similarity=0.231 Sum_probs=144.2
Q ss_pred ceecCcccHHHHHHHHH-HhCCchhh-----------------hhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 172 EVVLGGDVWDLLDELMI-YMGNPMQY-----------------YERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~-~l~~p~~~-----------------~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
+|+|++++|+.|...+. .++..... .......+.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 58999999998887662 11111100 0112345678999999999999999999999999999
Q ss_pred EEeCccccchh--hhH-HHHHHHHHHHHH----hcCCeEEEEccchhhhccCCCC----ChhHHHHHHHHHHHhcCCcc-
Q 005643 234 FASGAEFTDSE--KSG-AARINEMFSIAR----RNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKE- 301 (686)
Q Consensus 234 ~is~s~~~~~~--~~~-~~~vr~lF~~Ak----~~~P~ILfIDEiDal~~~~~~~----~~e~~~~l~~LL~~ld~~~~- 301 (686)
.++|..+.... +.. ...+..+|..+. ...++||||||+|.+...+.+. +......++.|+..|++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99999886432 221 233555555432 2357899999999997543221 11122367888888886421
Q ss_pred --cCCcc-------cccccccEEEEEecCCC-----------------------------------------CCCccccc
Q 005643 302 --RTGID-------RFSLRQAVIFICATNRP-----------------------------------------DELDLEFV 331 (686)
Q Consensus 302 --~~~~~-------~~~~~~~ViVIaaTN~p-----------------------------------------~~LD~aLl 331 (686)
..+.. ......++++|++||.. ..+.|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 00000 00122456888887721 12456666
Q ss_pred cCCccceEEEeCCCCHHHHHHHHHH----H-------h--cCCCcc-ccccHHHHHHhcc--CCCHHHHHHHHHHHHHHH
Q 005643 332 RPGRIDRRLYIGLPDAKQRVQIFDV----H-------S--AGKQLA-EDVNFEELVFRTV--GFSGADIRNLVNESGIMS 395 (686)
Q Consensus 332 rpgRFd~~I~v~~Pd~~eR~~Il~~----~-------l--~~~~l~-~dvdl~~La~~t~--G~sgadL~~lv~eA~~~A 395 (686)
+ ||+..+.|++++.++...|+.. + + .+..+. .+..+..|+.... ....+.|.++++.+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 6 8988999999999999998862 1 1 111111 1223566666643 356789999998888765
Q ss_pred HHhCC------CcccHHHHHHH
Q 005643 396 VRKGH------SKIQQQDIVDV 411 (686)
Q Consensus 396 ~r~~~------~~It~~dl~~A 411 (686)
..+.. ..|+.+++..+
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTTS
T ss_pred HhhccCCCCCEEEEeHHHhcCC
Confidence 55322 24777776543
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.67 E-value=2.3e-16 Score=186.34 Aligned_cols=205 Identities=17% Similarity=0.234 Sum_probs=134.9
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhh
Q 005643 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (686)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~ 246 (686)
.++|+|++++++.+...+...+..... ..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+....
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~---~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKD---PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSC---TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 356889998888777777654422110 01222379999999999999999999987 789999999999876322
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCC-
Q 005643 247 GAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDE- 325 (686)
Q Consensus 247 ~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~- 325 (686)
. ...++...+...++||||||||.+.. ..++.|+..|+........++.....++++|+|||.+..
T Consensus 567 ~---~~~l~~~~~~~~~~vl~lDEi~~~~~----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~ 633 (758)
T 3pxi_A 567 S---GGQLTEKVRRKPYSVVLLDAIEKAHP----------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE 633 (758)
T ss_dssp C------CHHHHHHCSSSEEEEECGGGSCH----------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC
T ss_pred c---cchhhHHHHhCCCeEEEEeCccccCH----------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh
Confidence 2 22333444556678999999998842 467778888876433222222233456899999997654
Q ss_pred -----------CccccccCCccceEEEeCCCCHHHHHHHHHHHhcCC-------Ccc---ccccHHHHHHh--ccCCCHH
Q 005643 326 -----------LDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGK-------QLA---EDVNFEELVFR--TVGFSGA 382 (686)
Q Consensus 326 -----------LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~-------~l~---~dvdl~~La~~--t~G~sga 382 (686)
++|+|++ ||+..|.|++|+.+++.+|++.++... ... .+..+..|+.. ...+..+
T Consensus 634 ~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R 711 (758)
T 3pxi_A 634 KDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGAR 711 (758)
T ss_dssp CHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTT
T ss_pred HHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCCh
Confidence 7888887 999999999999999999998766421 111 11123445442 2334556
Q ss_pred HHHHHHHHHH
Q 005643 383 DIRNLVNESG 392 (686)
Q Consensus 383 dL~~lv~eA~ 392 (686)
+|+++++.+.
T Consensus 712 ~L~~~i~~~v 721 (758)
T 3pxi_A 712 PLRRAIQKHV 721 (758)
T ss_dssp THHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.66 E-value=3.8e-16 Score=184.45 Aligned_cols=170 Identities=20% Similarity=0.252 Sum_probs=123.2
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhhCC----ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccch---
Q 005643 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGV----QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS--- 243 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~----~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~--- 243 (686)
++|+|++++++.+...+...+ .|. ++..++||+||||||||++|+++|+.++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 457888877777766554422 222 234479999999999999999999999999999999998652
Q ss_pred --------hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 244 --------EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 244 --------~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
...+......+....+...++||||||||.+.. ..++.|+..|+.........+.....+++
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~----------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP----------DVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH----------HHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCH----------HHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 012222223344555556689999999998842 36788888887533221111122225689
Q ss_pred EEEecCCCC-------------------------CCccccccCCccceEEEeCCCCHHHHHHHHHHHhc
Q 005643 316 FICATNRPD-------------------------ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 316 VIaaTN~p~-------------------------~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~ 359 (686)
||+|||.+. .++|+|++ ||+..|.|++|+.+++..|++.++.
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 999999854 67888888 9999999999999999999998765
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.66 E-value=4.3e-16 Score=174.27 Aligned_cols=206 Identities=18% Similarity=0.217 Sum_probs=136.1
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEE
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~i 235 (686)
.+.+|++|+|.++..+. ++..+... .+.++||+||||||||++|+++|..+ +.+|+.+
T Consensus 175 r~~~ld~iiGr~~~i~~---l~~~l~r~---------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQR---VIEVLSRR---------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp TSSCSCCCCCCHHHHHH---HHHHHHCS---------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hcCCCCCccCcHHHHHH---HHHHHhcc---------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 45679999999855444 44444332 35689999999999999999999986 7889998
Q ss_pred eCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 236 SGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 236 s~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
+++ ....+....+++.+|..+....|+||||| +. ....+.|+..|.. ..+.
T Consensus 243 ~~~--~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~---------~~a~~~L~~~L~~-------------g~v~ 293 (468)
T 3pxg_A 243 DMG--TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------IDASNILKPSLAR-------------GELQ 293 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTTS-------------SSCE
T ss_pred eCC--ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc---------hhHHHHHHHhhcC-------------CCEE
Confidence 887 11134444678899999998889999999 11 1123444443432 2379
Q ss_pred EEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCC----cc-ccccHHHHHHhccCC-----C
Q 005643 316 FICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ----LA-EDVNFEELVFRTVGF-----S 380 (686)
Q Consensus 316 VIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~----l~-~dvdl~~La~~t~G~-----s 380 (686)
+|++||.++ .+|++++| ||. .|.|+.|+.+++.+||+.++.... .. .+..+..++..+.++ .
T Consensus 294 vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~l 370 (468)
T 3pxg_A 294 CIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFL 370 (468)
T ss_dssp EEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred EEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcC
Confidence 999999987 68999999 997 599999999999999997765421 11 222355566554443 4
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CcccHHHHHHHHHHH
Q 005643 381 GADIRNLVNESGIMSVRKGH-SKIQQQDIVDVLDKQ 415 (686)
Q Consensus 381 gadL~~lv~eA~~~A~r~~~-~~It~~dl~~Al~~~ 415 (686)
+.....++.+|+..+..+.. ......+++..+++.
T Consensus 371 p~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 371 PDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 55777888888776655443 233445555555543
No 64
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.3e-16 Score=164.60 Aligned_cols=137 Identities=6% Similarity=0.122 Sum_probs=102.2
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEEeCccccchh-----------------hhHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFASGAEFTDSE-----------------KSGAARINEM 254 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~is~s~~~~~~-----------------~~~~~~vr~l 254 (686)
..|.+++|+||||||||++++++++++ ++.+++++|..+.... +.....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 468899999999999999999999988 3568899998765421 1124457778
Q ss_pred HHHH--HhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCC----Ccc
Q 005643 255 FSIA--RRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDE----LDL 328 (686)
Q Consensus 255 F~~A--k~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~----LD~ 328 (686)
|... ....++||||||+|.+. . ...+..|+...... ...++||+++|..+. |++
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-~--------q~~L~~l~~~~~~~-----------~s~~~vI~i~n~~d~~~~~L~~ 182 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-S--------EKILQYFEKWISSK-----------NSKLSIICVGGHNVTIREQINI 182 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-C--------THHHHHHHHHHHCS-----------SCCEEEEEECCSSCCCHHHHHT
T ss_pred HHHhhhccCCceEEEEecHHHhh-c--------chHHHHHHhccccc-----------CCcEEEEEEecCcccchhhcch
Confidence 8775 34668999999999996 1 23566666543221 124899999998764 456
Q ss_pred ccccCCccc-eEEEeCCCCHHHHHHHHHHHhcC
Q 005643 329 EFVRPGRID-RRLYIGLPDAKQRVQIFDVHSAG 360 (686)
Q Consensus 329 aLlrpgRFd-~~I~v~~Pd~~eR~~Il~~~l~~ 360 (686)
++++ ||. ..|.|++++.++..+|++..+..
T Consensus 183 ~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 183 MPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 6677 886 68999999999999999977654
No 65
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.64 E-value=9.9e-16 Score=160.60 Aligned_cols=206 Identities=18% Similarity=0.199 Sum_probs=139.4
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGA 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s 238 (686)
+..+.+|++++|++++++.+... ++.. ..| ++||+||||||||++|+++++++ +.+++.++++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~---l~~~--------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGY---VERK--------NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTT---TTTT--------CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred hcCCCCHHHHhCCHHHHHHHHHH---HhCC--------CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 45667899999998776665543 3321 223 39999999999999999999986 4568888887
Q ss_pred cccchhhhHHHHHHHHHHHHH--hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEE
Q 005643 239 EFTDSEKSGAARINEMFSIAR--RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIF 316 (686)
Q Consensus 239 ~~~~~~~~~~~~vr~lF~~Ak--~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViV 316 (686)
+..... .....+........ ...+.||+|||+|.+.. ...+.|+..++... .++++
T Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~L~~~le~~~-----------~~~~~ 135 (319)
T 2chq_A 78 DERGID-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMYS-----------KSCRF 135 (319)
T ss_dssp STTCTT-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH----------HHHHTTGGGTSSSS-----------SSEEE
T ss_pred cccChH-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH----------HHHHHHHHHHHhcC-----------CCCeE
Confidence 753321 11111222211110 13478999999999842 23455666665422 24788
Q ss_pred EEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 005643 317 ICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 317 IaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA~~~A 395 (686)
|++||.+..+++++.+ |+. .+.+++|+.+++.++++.++...... ++..+..++..+.| +.+.+.++++.++..
T Consensus 136 i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~- 210 (319)
T 2chq_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI- 210 (319)
T ss_dssp EEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS-
T ss_pred EEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-
Confidence 9999999999999998 885 89999999999999999887654432 22346777766654 556666666554421
Q ss_pred HHhCCCcccHHHHHHHH
Q 005643 396 VRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 396 ~r~~~~~It~~dl~~Al 412 (686)
...|+.+++.+++
T Consensus 211 ----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 211 ----GEVVDADTIYQIT 223 (319)
T ss_dssp ----SSCBCHHHHHHHT
T ss_pred ----CCCCCHHHHHHHH
Confidence 3468888876554
No 66
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.63 E-value=6.8e-16 Score=173.44 Aligned_cols=213 Identities=19% Similarity=0.196 Sum_probs=134.2
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC--CCeEEEeCccccch--hh--
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDS--EK-- 245 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g--~~fi~is~s~~~~~--~~-- 245 (686)
.|+|++++++.+...+. ...++||+||||||||++|+++|..++ .+|..+++.-.... .+
T Consensus 23 ~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 46788876654433221 135899999999999999999999884 46666665421111 11
Q ss_pred hHHH-HHHHHHHHHHhc---CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC
Q 005643 246 SGAA-RINEMFSIARRN---APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN 321 (686)
Q Consensus 246 ~~~~-~vr~lF~~Ak~~---~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN 321 (686)
.+.. .-...|..+... .++|||||||+.+. ..+.+.|+..|+.......+........ ++|+|||
T Consensus 89 ~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~----------~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ATN 157 (500)
T 3nbx_X 89 SIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG----------PAILNTLLTAINERQFRNGAHVEKIPMR-LLVAASN 157 (500)
T ss_dssp C----------CBCCTTSGGGCSEEEEESGGGCC----------HHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEES
T ss_pred cHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc----------HHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhccc
Confidence 1111 112233322222 46899999998763 2467888888875432222111222233 4577777
Q ss_pred CCCC---CccccccCCccceEEEeCCCCH-HHHHHHHHHHhc-------------------------CCCccccccHHHH
Q 005643 322 RPDE---LDLEFVRPGRIDRRLYIGLPDA-KQRVQIFDVHSA-------------------------GKQLAEDVNFEEL 372 (686)
Q Consensus 322 ~p~~---LD~aLlrpgRFd~~I~v~~Pd~-~eR~~Il~~~l~-------------------------~~~l~~dvdl~~L 372 (686)
.+.. +.+++++ ||...+.++.|+. +++..|++.+.. +..+.+++ ++.+
T Consensus 158 ~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v-~e~i 234 (500)
T 3nbx_X 158 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV-FELI 234 (500)
T ss_dssp SCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-HHHH
T ss_pred cCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-HHHH
Confidence 5322 3458998 9999999999987 778899876542 11122111 2333
Q ss_pred HHh---------ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 005643 373 VFR---------TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 373 a~~---------t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~ 413 (686)
+.. ..|.|++.+..+++.|...|..+|+..|+.+|+. ++.
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~ 283 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLK 283 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGG
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHH
Confidence 332 2588999999999999999999999999999987 443
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.62 E-value=1.9e-15 Score=180.76 Aligned_cols=202 Identities=16% Similarity=0.199 Sum_probs=132.8
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEE
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~i 235 (686)
.+.+|++++|.++ +++.++..+... .+.++||+||||||||++|+++|+.+ +.+++++
T Consensus 165 r~~~ld~viGr~~---~i~~l~~~l~~~---------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 165 AEGKLDPVIGRDE---EIRRVIQILLRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HTTCSCCCCSCHH---HHHHHHHHHHCS---------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred hcCCCcccCCcHH---HHHHHHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 3568999999984 455555554332 45679999999999999999999987 8899999
Q ss_pred eCccccch---hhhHHHHHHHHHHHHHhc-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 005643 236 SGAEFTDS---EKSGAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (686)
Q Consensus 236 s~s~~~~~---~~~~~~~vr~lF~~Ak~~-~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (686)
+++.+... .+....+++.+|..+... .|+||||||+|.+.+..... ......+.|...+..
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--g~~~~~~~L~~~l~~------------- 297 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE--GAVDAGNMLKPALAR------------- 297 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHHHT-------------
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc--chHHHHHHHHHHHhC-------------
Confidence 99988632 355677889999998875 68999999999997543221 112233444444432
Q ss_pred ccEEEEEecCCCC----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC------CCccccccHHHHHHh-----c
Q 005643 312 QAVIFICATNRPD----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG------KQLAEDVNFEELVFR-----T 376 (686)
Q Consensus 312 ~~ViVIaaTN~p~----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~------~~l~~dvdl~~La~~-----t 376 (686)
..+.+|++||.++ .+|++|+| ||+. +.|+.|+.+++.+||+.++.. ..+. +..+..++.. +
T Consensus 298 ~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 298 GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYIT 373 (854)
T ss_dssp TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCC
T ss_pred CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcc
Confidence 1267889998775 47999999 9985 999999999999999865542 2222 2234455544 3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHh
Q 005643 377 VGFSGADIRNLVNESGIMSVRK 398 (686)
Q Consensus 377 ~G~sgadL~~lv~eA~~~A~r~ 398 (686)
..|.+.....++.+|+..+..+
T Consensus 374 ~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 374 ERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp SSCTHHHHHHHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHHHHHHhh
Confidence 4567888889999888776554
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.62 E-value=2.7e-15 Score=154.52 Aligned_cols=212 Identities=19% Similarity=0.199 Sum_probs=120.9
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC---CCeEEEeCccccchh
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFTDSE 244 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g---~~fi~is~s~~~~~~ 244 (686)
.+|++++|.+.....+.+.+..+.. .+.++||+||||||||++|++++..+. .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999998766655554444322 246899999999999999999999874 789999999875431
Q ss_pred hhHH-------------HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccc
Q 005643 245 KSGA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLR 311 (686)
Q Consensus 245 ~~~~-------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~ 311 (686)
.... ......|..+ .+++|||||+|.+.. .....|+..|+..............
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM----------MVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH----------HHHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH----------HHHHHHHHHHHhCCeecCCCccccc
Confidence 1100 0001122222 357999999999852 2345566666542111100111123
Q ss_pred ccEEEEEecCCC-------CCCccccccCCccceEEEeCCCCHHHH----HHHHHHHhc----CCCc-----cccccHHH
Q 005643 312 QAVIFICATNRP-------DELDLEFVRPGRIDRRLYIGLPDAKQR----VQIFDVHSA----GKQL-----AEDVNFEE 371 (686)
Q Consensus 312 ~~ViVIaaTN~p-------~~LD~aLlrpgRFd~~I~v~~Pd~~eR----~~Il~~~l~----~~~l-----~~dvdl~~ 371 (686)
.++.+|+|||.+ ..++++|.+ ||.. +.+..|+..+| ..+++.++. .... -.+..+..
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 457899999985 246788887 8853 44555554443 444443322 1111 11222455
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005643 372 LVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (686)
Q Consensus 372 La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 408 (686)
|.......+.++|.++++.+...+. ...|+.+|+
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 5555434467899999998876652 345666554
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=5.6e-15 Score=155.10 Aligned_cols=202 Identities=14% Similarity=0.173 Sum_probs=140.8
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCcc
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAE 239 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~ 239 (686)
..+.+|++++|++++++.|...+. .. +.|. +||+||||||||++|+++++++ +.+++.+++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~---~~--------~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAK---DG--------NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHH---SC--------CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHH---cC--------CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 456789999999987777666543 21 2344 9999999999999999999985 45678888776
Q ss_pred ccchhhhHHHHHHHHHHHHH-------hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 240 FTDSEKSGAARINEMFSIAR-------RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 240 ~~~~~~~~~~~vr~lF~~Ak-------~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
... ...++.++.... ...++||+|||+|.+.. ...+.|+..++... .
T Consensus 83 ~~~-----~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~~~-----------~ 136 (323)
T 1sxj_B 83 DRG-----IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----------GAQQALRRTMELYS-----------N 136 (323)
T ss_dssp CCS-----HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH----------HHHHTTHHHHHHTT-----------T
T ss_pred ccC-----hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH----------HHHHHHHHHHhccC-----------C
Confidence 432 233445554443 23478999999999842 23455666665432 2
Q ss_pred cEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHH
Q 005643 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (686)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA 391 (686)
++++|++||.+..+++++.+ |+. .+.+++|+.++..++++.++...... ++..+..++..+.| +.+.+.++++.+
T Consensus 137 ~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~ 212 (323)
T 1sxj_B 137 STRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQST 212 (323)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 36788888999999999998 874 89999999999999998776532222 22346778887755 566666666655
Q ss_pred HHHHHHhCCCcccHHHHHHHHH
Q 005643 392 GIMSVRKGHSKIQQQDIVDVLD 413 (686)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al~ 413 (686)
... . ..|+.+++.+++.
T Consensus 213 ~~~---~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 213 VAG---H--GLVNADNVFKIVD 229 (323)
T ss_dssp HHH---H--SSBCHHHHHHHHT
T ss_pred Hhc---C--CCcCHHHHHHHHC
Confidence 422 1 3588888766653
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.62 E-value=8.2e-16 Score=147.69 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=106.1
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEEe
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFAS 236 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~is 236 (686)
+.+|++++|.++ +++.+...+... .+.++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~---~~~~l~~~l~~~---------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDT---EIRRAIQILSRR---------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHH---HHHHHHHHHTSS---------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchH---HHHHHHHHHhCC---------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 457999999885 455555555442 46789999999999999999999987 78888888
Q ss_pred Cccccch---hhhHHHHHHHHHHHHHhc-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 237 GAEFTDS---EKSGAARINEMFSIARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 237 ~s~~~~~---~~~~~~~vr~lF~~Ak~~-~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
+..+... .+.....++.++..+... .|++|||||+|.+.+.+.... ......+.|...++. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~~l~~~~~~-------------~ 151 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-GALDAGNILKPMLAR-------------G 151 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-TSCCTHHHHHHHHHT-------------T
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-cchHHHHHHHHHHhc-------------C
Confidence 8776432 234455677777776654 689999999999964332111 111123333333332 1
Q ss_pred cEEEEEecCCCC-----CCccccccCCccceEEEeCCCC
Q 005643 313 AVIFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPD 346 (686)
Q Consensus 313 ~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd 346 (686)
.+++|++||.++ .+++++++ ||+ .+.++.|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 268889998775 68999999 998 49999986
No 71
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=9.9e-15 Score=153.50 Aligned_cols=202 Identities=18% Similarity=0.208 Sum_probs=139.5
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEEeCc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG-----LPFVFASGA 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g-----~~fi~is~s 238 (686)
...+.+|++++|++++++.|...+.. . + +.++||+||||||||++|+++++.++ .+++.++++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~---~--------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT---G--------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH---T--------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc---C--------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 35567899999999887777766543 1 1 22599999999999999999999863 347777776
Q ss_pred cccchhhhHHHHHHHHHHH-HH-----hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 239 EFTDSEKSGAARINEMFSI-AR-----RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 239 ~~~~~~~~~~~~vr~lF~~-Ak-----~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
+.... ..++..+.. +. ...+.||+|||+|.+.. ...+.|+..++....
T Consensus 86 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~L~~~le~~~~----------- 139 (327)
T 1iqp_A 86 DERGI-----NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ----------DAQQALRRTMEMFSS----------- 139 (327)
T ss_dssp CHHHH-----HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH----------HHHHHHHHHHHHTTT-----------
T ss_pred ccCch-----HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH----------HHHHHHHHHHHhcCC-----------
Confidence 54221 112222211 11 13478999999999842 245667776665322
Q ss_pred cEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHhccCCCHHHHHHHHHHH
Q 005643 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFRTVGFSGADIRNLVNES 391 (686)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~eA 391 (686)
++.+|++||.++.+++++.+ |+. .+.+++|+.++..++++..+...... ++..+..++..+.| +.+.+.++++.+
T Consensus 140 ~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 140 NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp TEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 36788899999999999998 885 79999999999999999877654432 22346778877655 667777777654
Q ss_pred HHHHHHhCCCcccHHHHHHHH
Q 005643 392 GIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 392 ~~~A~r~~~~~It~~dl~~Al 412 (686)
.. ....|+.+++..++
T Consensus 216 ~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 216 AA-----LDKKITDENVFMVA 231 (327)
T ss_dssp HT-----TCSEECHHHHHHHT
T ss_pred Hh-----cCCCCCHHHHHHHH
Confidence 42 22368887776554
No 72
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.61 E-value=1.7e-14 Score=154.89 Aligned_cols=203 Identities=20% Similarity=0.253 Sum_probs=144.7
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCC-------------
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLP------------- 231 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------- 231 (686)
..+.+|++++|++++.+.|...+.. .+.+..+||+||||||||++|+++|+.++..
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 4556899999999877777665542 1345689999999999999999999987642
Q ss_pred -----------eEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHh
Q 005643 232 -----------FVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQL 296 (686)
Q Consensus 232 -----------fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~l 296 (686)
++.+++... .+...++.+++.+.. ..+.||+|||+|.+.. ...+.|+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~Ll~~l 143 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR-----TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------HSFNALLKTL 143 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS-----CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH----------HHHHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc-----CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH----------HHHHHHHHHH
Confidence 222222210 111235666666543 3468999999999842 3567777777
Q ss_pred cCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-ccccHHHHHHh
Q 005643 297 DGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-EDVNFEELVFR 375 (686)
Q Consensus 297 d~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~La~~ 375 (686)
+... .++++|++||.+..+++.+++ |+ ..+.+++|+.++..++++.++...... ++..+..++..
T Consensus 144 e~~~-----------~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~ 209 (373)
T 1jr3_A 144 EEPP-----------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 (373)
T ss_dssp HSCC-----------SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH
T ss_pred hcCC-----------CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6532 237888889999999999988 87 789999999999999999877543322 22236778888
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 376 TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 376 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
+.| +.+++.++++.+...+ ...|+.+++.+++
T Consensus 210 ~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 210 AEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp SSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 766 7888888888776433 3468988886654
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.61 E-value=2.5e-15 Score=177.61 Aligned_cols=189 Identities=19% Similarity=0.210 Sum_probs=129.9
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEE
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----------GLPFVFA 235 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----------g~~fi~i 235 (686)
.+..|++|+|.++..+.+.+ .+..+ .+.++||+||||||||++|+++|..+ +.+++.+
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~---~l~~~---------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIE---VLSRR---------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHH---HHHCS---------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hhCCCCCccCchHHHHHHHH---HHhCC---------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 45679999999865554444 43332 45689999999999999999999996 7888888
Q ss_pred eCccccch-hhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccE
Q 005643 236 SGAEFTDS-EKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAV 314 (686)
Q Consensus 236 s~s~~~~~-~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~V 314 (686)
++ ... .+....+++.+|..+....|+||||| +. ....+.|+..|+. ..+
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~---------~~~~~~L~~~l~~-------------~~v 292 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------IDASNILKPSLAR-------------GEL 292 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTTS-------------SSC
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc---------hhHHHHHHHHHhc-------------CCE
Confidence 77 222 34455678999999999899999999 11 1123444443432 237
Q ss_pred EEEEecCCCC-----CCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCcc-----ccccHHHHHHh-----ccCC
Q 005643 315 IFICATNRPD-----ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLA-----EDVNFEELVFR-----TVGF 379 (686)
Q Consensus 315 iVIaaTN~p~-----~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~-----~dvdl~~La~~-----t~G~ 379 (686)
.+|+|||..+ .+|++++| || ..|.|+.|+.+++.+||+.+....... .+..+..++.. +.++
T Consensus 293 ~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~ 369 (758)
T 3pxi_A 293 QCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (758)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred EEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCc
Confidence 9999999988 79999999 99 569999999999999999776543221 12224444443 3466
Q ss_pred CHHHHHHHHHHHHHHHHHhC
Q 005643 380 SGADIRNLVNESGIMSVRKG 399 (686)
Q Consensus 380 sgadL~~lv~eA~~~A~r~~ 399 (686)
.+.....++.+|+..+..+.
T Consensus 370 ~p~~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 370 LPDKAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp TTHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHhhc
Confidence 77888888988877665543
No 74
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=2e-16 Score=181.81 Aligned_cols=196 Identities=13% Similarity=0.130 Sum_probs=131.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE----eCccccchh-h---hHHHH-HHHHHHHHHhcCCeEEEEccchhh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA----SGAEFTDSE-K---SGAAR-INEMFSIARRNAPAFVFVDEIDAI 274 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i----s~s~~~~~~-~---~~~~~-vr~lF~~Ak~~~P~ILfIDEiDal 274 (686)
..++||+||||||||++|+++|+.++.+++.. ++..+.... . .+... ....+..| ..+|+||||||.+
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l 403 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKM 403 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCC
T ss_pred CcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhhhC
Confidence 34899999999999999999999987765542 223332221 0 00000 01122223 3479999999998
Q ss_pred hccCCCCChhHHHHHHHHHHHhcCCccc--CCcccccccccEEEEEecCCCC-------------CCccccccCCccce-
Q 005643 275 AGRHARKDPRRRATFEALIAQLDGDKER--TGIDRFSLRQAVIFICATNRPD-------------ELDLEFVRPGRIDR- 338 (686)
Q Consensus 275 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~--~~~~~~~~~~~ViVIaaTN~p~-------------~LD~aLlrpgRFd~- 338 (686)
.. ...+.|+..|+..... ..+.....+.++.||||||.+. .|+++|++ |||.
T Consensus 404 ~~----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~ 471 (595)
T 3f9v_A 404 RD----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLI 471 (595)
T ss_dssp CS----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCC
T ss_pred CH----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEE
Confidence 43 2457788888754321 1111223345689999999986 89999999 9985
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCC-------c-------------------cccccHHHHHHh--------------ccC
Q 005643 339 RLYIGLPDAKQRVQIFDVHSAGKQ-------L-------------------AEDVNFEELVFR--------------TVG 378 (686)
Q Consensus 339 ~I~v~~Pd~~eR~~Il~~~l~~~~-------l-------------------~~dvdl~~La~~--------------t~G 378 (686)
.+..+.|+.+ ...|.+..+.... + -.+.....|... +.+
T Consensus 472 ~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~ 550 (595)
T 3f9v_A 472 FILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPIL 550 (595)
T ss_dssp EEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBC
T ss_pred EEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 5666778877 7777776654321 0 011112333333 357
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 379 FSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 379 ~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
.|.+.+.++++.|...|..+++..|+.+|+.+|+.-.
T Consensus 551 ~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 551 ITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp SSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999998743
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.58 E-value=4.6e-15 Score=177.52 Aligned_cols=211 Identities=19% Similarity=0.225 Sum_probs=139.8
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhh-
Q 005643 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK- 245 (686)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~- 245 (686)
+++|+|++++.+.+...+...+..... ..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467889988877777766553321000 01233589999999999999999999988 78999999998876411
Q ss_pred ----------hHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 246 ----------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 246 ----------~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
.+......+....+...++||||||+|.+. ...++.|+..|+.........+.....+++
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~----------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH----------PDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSC----------HHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC----------HHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 022222344445555667999999999884 247788888888643222111122234689
Q ss_pred EEEecCCC--------------------------CCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC---------
Q 005643 316 FICATNRP--------------------------DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG--------- 360 (686)
Q Consensus 316 VIaaTN~p--------------------------~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~--------- 360 (686)
||+|||.. ..+.|+|+. ||+..+.+.+|+.++...|++.++..
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~ 781 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKR 781 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999972 235677776 99999999999999999999877642
Q ss_pred CCcc-ccccHHHHHHhcc--CCCHHHHHHHHHHHHHHH
Q 005643 361 KQLA-EDVNFEELVFRTV--GFSGADIRNLVNESGIMS 395 (686)
Q Consensus 361 ~~l~-~dvdl~~La~~t~--G~sgadL~~lv~eA~~~A 395 (686)
..+. .+..+..|+.... .++.++|.++++.+...+
T Consensus 782 ~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 782 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp CEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred ceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 1111 1122455666544 456777887777665443
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.56 E-value=1.1e-14 Score=153.77 Aligned_cols=207 Identities=20% Similarity=0.234 Sum_probs=127.4
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhH-
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSG- 247 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~- 247 (686)
+++|.....+.+.+.+.... ..+.+|||+||||||||++|++++..+ +.||+.++|+.+.......
T Consensus 3 ~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~ 72 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESE 72 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHH
Confidence 57788765555555544432 245689999999999999999999865 6799999999876531110
Q ss_pred -----------H-HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 248 -----------A-ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 248 -----------~-~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
+ ......|..|. +++|||||||.+.. .....|+..|+.......+.......++.
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~r 139 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP----------LMQVRLLRAIQEREVQRVGSNQTISVDVR 139 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH----------HHHHHHHHHHHSSBCCBTTBCCCCBCCCE
T ss_pred hcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH----------HHHHHHHHHHhcCEeeecCCcccccCCeE
Confidence 0 01223444443 47999999999952 24566777776543221111122344689
Q ss_pred EEEecCCC-------CCCccccccCCccceEEEeCCCCHHHH----HHHHHHHhcC---------CCccccccHHHHHHh
Q 005643 316 FICATNRP-------DELDLEFVRPGRIDRRLYIGLPDAKQR----VQIFDVHSAG---------KQLAEDVNFEELVFR 375 (686)
Q Consensus 316 VIaaTN~p-------~~LD~aLlrpgRFd~~I~v~~Pd~~eR----~~Il~~~l~~---------~~l~~dvdl~~La~~ 375 (686)
||+|||.+ ..+++.|.. ||. .+.+..|+..+| ..+++.++.. ..+. +..+..|...
T Consensus 140 iI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s-~~a~~~L~~~ 215 (304)
T 1ojl_A 140 LIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFT-PQAMDLLIHY 215 (304)
T ss_dssp EEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBC-HHHHHHHHHC
T ss_pred EEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCC-HHHHHHHHcC
Confidence 99999985 134555665 664 455555655544 3355544321 1122 2235666666
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Q 005643 376 TVGFSGADIRNLVNESGIMSVRKGHSKIQQQDI 408 (686)
Q Consensus 376 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 408 (686)
....+.++|.++++.|...+ ....|+.+|+
T Consensus 216 ~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l 245 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVLL---TGEYISEREL 245 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHHC---CSSSBCGGGS
T ss_pred CCCCCHHHHHHHHHHHHHhC---CCCcccHHhh
Confidence 53447789999999888665 2345766654
No 77
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=2.4e-14 Score=153.09 Aligned_cols=206 Identities=16% Similarity=0.131 Sum_probs=135.9
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC-----CeEEEeCc
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL-----PFVFASGA 238 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~-----~fi~is~s 238 (686)
+..+.+|++++|++++.+.|...+. . .+.|. +||+||||||||++|+++|+.+.. .++.++++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~---~--------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVD---E--------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHH---T--------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHh---c--------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 4566789999999877776665543 2 12343 999999999999999999998633 35666665
Q ss_pred cccchhhhHHHHHHHHHHHHHh------cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 239 EFTDSEKSGAARINEMFSIARR------NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 239 ~~~~~~~~~~~~vr~lF~~Ak~------~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
+... ...++........ ..+.|++|||+|.+.. ...+.|+..++....
T Consensus 86 ~~~~-----~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~~~~----------- 139 (340)
T 1sxj_C 86 DDRG-----IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN----------AAQNALRRVIERYTK----------- 139 (340)
T ss_dssp SCCS-----HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH----------HHHHHHHHHHHHTTT-----------
T ss_pred cccc-----HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH----------HHHHHHHHHHhcCCC-----------
Confidence 5321 2233333332221 2368999999999842 235667777665432
Q ss_pred cEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC--CCccccccHHHHHHhccCCCHHHHHHHHHH
Q 005643 313 AVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG--KQLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (686)
Q Consensus 313 ~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~La~~t~G~sgadL~~lv~e 390 (686)
.+.+|.+||.+..+.+++++ |+. .+.+..++.++..+++...+.. ..+.+ ..+..++..+.| +.+.+.++++.
T Consensus 140 ~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~-~~~~~i~~~s~G-~~r~~~~~l~~ 214 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSP-NAEKALIELSNG-DMRRVLNVLQS 214 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCH-HHHHHHHHHHTT-CHHHHHHHTTT
T ss_pred CeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHHHHHHHHH
Confidence 25677889999999999998 885 7899999999999988877743 33332 235667766554 45555555544
Q ss_pred HHHHHHHhCCCcccHHHHHHHH
Q 005643 391 SGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 391 A~~~A~r~~~~~It~~dl~~Al 412 (686)
+...+...+...|+.+++.+++
T Consensus 215 ~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 215 CKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHhcCCcccccccHHHHHHHh
Confidence 4333222223468888876554
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.1e-13 Score=148.05 Aligned_cols=192 Identities=11% Similarity=0.114 Sum_probs=127.1
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC-------------
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL------------- 230 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~------------- 230 (686)
+..+.+|++++|++++.+.++..+. +. .+.|. ++|+||||||||++++++|+++..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~--~~--------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD--QP--------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT--CT--------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh--hC--------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 4567889999999877666554320 11 23455 999999999999999999996421
Q ss_pred ----------------CeEEEeCccccchhhhHHHHHHHHHHHHH--------------hcCCeEEEEccchhhhccCCC
Q 005643 231 ----------------PFVFASGAEFTDSEKSGAARINEMFSIAR--------------RNAPAFVFVDEIDAIAGRHAR 280 (686)
Q Consensus 231 ----------------~fi~is~s~~~~~~~~~~~~vr~lF~~Ak--------------~~~P~ILfIDEiDal~~~~~~ 280 (686)
+++.+++++.... ....++..++.+. ...|.||+|||++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~----- 147 (354)
T 1sxj_E 76 VTASNRKLELNVVSSPYHLEITPSDMGNN---DRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT----- 147 (354)
T ss_dssp ----------CCEECSSEEEECCC----C---CHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----
T ss_pred cccccccceeeeecccceEEecHhhcCCc---chHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-----
Confidence 1222322221100 0112444444432 2257799999999863
Q ss_pred CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcC
Q 005643 281 KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG 360 (686)
Q Consensus 281 ~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~ 360 (686)
....+.|+..|+.... ++.+|.+||.++.+.+.+++ |+ ..+.|++|+.++..++++..+..
T Consensus 148 -----~~~~~~L~~~le~~~~-----------~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 148 -----KDAQAALRRTMEKYSK-----------NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp -----HHHHHHHHHHHHHSTT-----------TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhhcC-----------CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 1245566666655322 26788889999999999998 88 78999999999999999987754
Q ss_pred CCcc-c-cccHHHHHHhccCCCHHHHHHHHHHHHHH
Q 005643 361 KQLA-E-DVNFEELVFRTVGFSGADIRNLVNESGIM 394 (686)
Q Consensus 361 ~~l~-~-dvdl~~La~~t~G~sgadL~~lv~eA~~~ 394 (686)
..+. + +..+..++..+.| +.+++.++++.+...
T Consensus 209 ~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 209 ERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred cCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 3332 2 3347788877755 677777777766543
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.44 E-value=3.3e-12 Score=138.68 Aligned_cols=228 Identities=11% Similarity=0.083 Sum_probs=145.4
Q ss_pred ccccceecCcccHHHHHHHH-HHh-CCchhhhhhCCccCceEEE--EcCCCCcHHHHHHHHHHHh---------CCCeEE
Q 005643 168 SMYKEVVLGGDVWDLLDELM-IYM-GNPMQYYERGVQFVRGVLL--SGPPGTGKTLFARTLAKES---------GLPFVF 234 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv-~~l-~~p~~~~~~g~~~p~gvLL--~GPPGTGKT~LAralA~e~---------g~~fi~ 234 (686)
...++++|.++..+.|.+.+ ... ..+ ...+..++| +||||+|||++++++++++ +.++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 34478899886655555554 322 110 024668999 9999999999999998876 567888
Q ss_pred EeCccccchh-----------------hh-HHHHHHHHHHHHH-hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHH
Q 005643 235 ASGAEFTDSE-----------------KS-GAARINEMFSIAR-RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQ 295 (686)
Q Consensus 235 is~s~~~~~~-----------------~~-~~~~vr~lF~~Ak-~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ 295 (686)
++|....... +. .......+..... ...|.||+|||+|.+..... . ....+..++..
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-~---~~~~l~~l~~~ 167 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-I---AAEDLYTLLRV 167 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-S---CHHHHHHHHTH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-c---chHHHHHHHHH
Confidence 8875432110 00 0111222222222 34589999999999953210 1 12344555554
Q ss_pred hcCCcccCCcccccccccEEEEEecCCCC---CCc---cccccCCccceEEEeCCCCHHHHHHHHHHHhcC--C-Ccccc
Q 005643 296 LDGDKERTGIDRFSLRQAVIFICATNRPD---ELD---LEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAG--K-QLAED 366 (686)
Q Consensus 296 ld~~~~~~~~~~~~~~~~ViVIaaTN~p~---~LD---~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~--~-~l~~d 366 (686)
+....... ...++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++.++.. . ....+
T Consensus 168 ~~~~~~~~------~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~ 239 (412)
T 1w5s_A 168 HEEIPSRD------GVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEP 239 (412)
T ss_dssp HHHSCCTT------SCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCH
T ss_pred HHhcccCC------CCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCCh
Confidence 44321000 012478888888765 344 56666 66666999999999999999866531 1 11223
Q ss_pred ccHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 367 VNFEELVFRTV------GFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 367 vdl~~La~~t~------G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
..+..++..+. | .++.+.++++.|...|..++...++.+++..++...
T Consensus 240 ~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 240 RHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34667777777 5 678889999999888888888889999998887653
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.40 E-value=4.4e-12 Score=135.47 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=112.9
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCC------------------------eEEEeCccccchhhhHHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLP------------------------FVFASGAEFTDSEKSGAARINEMFSI 257 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~------------------------fi~is~s~~~~~~~~~~~~vr~lF~~ 257 (686)
+.|.++||+||||||||++|+++|+.+..+ ++.++..+- ....+...++.+++.
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLGVDAVREVTEK 99 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBCHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCCHHHHHHHHHH
Confidence 567889999999999999999999987543 223322100 011234557777777
Q ss_pred HHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccC
Q 005643 258 ARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRP 333 (686)
Q Consensus 258 Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrp 333 (686)
+.. ..+.|++|||+|.+.. ...|.|+..|+.... ++++|.+||.++.+.+.+++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~----------~a~naLLk~lEep~~-----------~~~~Il~t~~~~~l~~ti~S- 157 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTD----------AAANALLKTLEEPPA-----------ETWFFLATREPERLLATLRS- 157 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCH----------HHHHHHHHHHTSCCT-----------TEEEEEEESCGGGSCHHHHT-
T ss_pred HhhccccCCcEEEEECchhhcCH----------HHHHHHHHHhcCCCC-----------CeEEEEEeCChHhCcHHHhh-
Confidence 653 2368999999999842 356889998876432 37888889999999999999
Q ss_pred CccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHH
Q 005643 334 GRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (686)
Q Consensus 334 gRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~e 390 (686)
|+ ..+.|++|+.++..++++... .+ ++..+..++..+.| +.+.+.++++.
T Consensus 158 -Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 158 -RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp -TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred -cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 88 579999999999999998765 22 23345667766655 55555555543
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.39 E-value=1.4e-12 Score=150.21 Aligned_cols=140 Identities=17% Similarity=0.319 Sum_probs=91.9
Q ss_pred CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcc----------cccccccEEEEEecCCC--CCCccc
Q 005643 262 APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGID----------RFSLRQAVIFICATNRP--DELDLE 329 (686)
Q Consensus 262 ~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~----------~~~~~~~ViVIaaTN~p--~~LD~a 329 (686)
.+.+|||||++.+. ....+.|+..|+......... ....+.++.||+|||+. +.++++
T Consensus 201 ~~gvL~LDEi~~l~----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~ 270 (604)
T 3k1j_A 201 HKGVLFIDEIATLS----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPA 270 (604)
T ss_dssp TTSEEEETTGGGSC----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHH
T ss_pred CCCEEEEechhhCC----------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHH
Confidence 45799999999983 235566777665332111000 11223468899999986 679999
Q ss_pred cccCCccc---eEEEeCCC---CHHHHHHHHHHHhc------C-CCccccccHHHHHHhc---cCC------CHHHHHHH
Q 005643 330 FVRPGRID---RRLYIGLP---DAKQRVQIFDVHSA------G-KQLAEDVNFEELVFRT---VGF------SGADIRNL 387 (686)
Q Consensus 330 LlrpgRFd---~~I~v~~P---d~~eR~~Il~~~l~------~-~~l~~dvdl~~La~~t---~G~------sgadL~~l 387 (686)
|++ ||+ ..+.++.. +.+....+++.... . ..+. +..+..|.+.. .|- +.+++.++
T Consensus 271 l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls-~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 271 LRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFT-KEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp HHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBB-HHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred HHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCC-HHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 999 996 45655432 34555555543322 1 1222 22344555432 553 78999999
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 388 VNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 388 v~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
++.|...|..+++..|+.+|+.+|+.+
T Consensus 348 lr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 348 VRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 999999998889999999999999864
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.39 E-value=1.4e-13 Score=129.01 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=76.3
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHH
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARI 251 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~v 251 (686)
+++|.++..+.+.+.+.... ..+.+|||+||||||||++|++++...+ +|+.++|+++.... .
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------~ 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------P 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------H
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------h
Confidence 56788776666666554321 2346799999999999999999999888 99999998865432 3
Q ss_pred HHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 005643 252 NEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (686)
Q Consensus 252 r~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (686)
..+|..+. +++|||||+|.+... ....|+..|+... ..++.+|+|||.+
T Consensus 68 ~~~~~~a~---~~~l~lDei~~l~~~----------~q~~Ll~~l~~~~----------~~~~~iI~~tn~~ 116 (143)
T 3co5_A 68 MELLQKAE---GGVLYVGDIAQYSRN----------IQTGITFIIGKAE----------RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHTT---TSEEEEEECTTCCHH----------HHHHHHHHHHHHT----------TTTCEEEEEEEEC
T ss_pred hhHHHhCC---CCeEEEeChHHCCHH----------HHHHHHHHHHhCC----------CCCEEEEEecCCC
Confidence 45566553 479999999998421 2344555554321 1236888888864
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.38 E-value=9.3e-13 Score=123.54 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=77.1
Q ss_pred ceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhHH
Q 005643 172 EVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGA 248 (686)
Q Consensus 172 dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~~ 248 (686)
+++|.+...+.+.+.+..+. ..+.+|||+||||||||++|++++..+ +.||+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 56788765555555444332 234679999999999999999999876 78999 999987664
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 005643 249 ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (686)
Q Consensus 249 ~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (686)
......|..+ .+++|||||+|.+.. .....|+..|.... .++.+|+|||.+
T Consensus 66 ~~~~~~~~~a---~~g~l~ldei~~l~~----------~~q~~Ll~~l~~~~-----------~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 PQLNDFIALA---QGGTLVLSHPEHLTR----------EQQYHLVQLQSQEH-----------RPFRLIGIGDTS 116 (145)
T ss_dssp SCHHHHHHHH---TTSCEEEECGGGSCH----------HHHHHHHHHHHSSS-----------CSSCEEEEESSC
T ss_pred hhhhcHHHHc---CCcEEEEcChHHCCH----------HHHHHHHHHHhhcC-----------CCEEEEEECCcC
Confidence 1234556655 346899999999942 23455666663322 236789999874
No 84
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.35 E-value=2.8e-12 Score=107.89 Aligned_cols=74 Identities=23% Similarity=0.462 Sum_probs=71.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 343 GLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 343 ~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
|+||.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|++++...|+++||..|+++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999888999999999999999999999999999999999999999999999999875
No 85
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.31 E-value=5.2e-12 Score=108.44 Aligned_cols=75 Identities=23% Similarity=0.457 Sum_probs=71.5
Q ss_pred eCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 342 IGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 342 v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
-.+||.++|.+||+.++++.++..++|+..||..|.||||+||.++|++|++.|++++...|+++||..|++++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999988999999999999999999999999999999999999999999999999875
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.25 E-value=9.5e-12 Score=155.39 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=103.0
Q ss_pred cCCcccccceecCcccHHHHHHHHHH-hC----------Cchhhhh------hCCc----------cCce--EEEEcCCC
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIY-MG----------NPMQYYE------RGVQ----------FVRG--VLLSGPPG 214 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~-l~----------~p~~~~~------~g~~----------~p~g--vLL~GPPG 214 (686)
....++|+||-|.+++|+.+.+.+.+ ++ .+..|.. .|.. +|+| +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 45669999999999999988887766 32 2445555 2333 5566 99999999
Q ss_pred CcHHHHHHHHHHHh---CCCeEEEeCccccch-------------hhh----HHHHHHHHHHHHHhcCCeEEEEccchhh
Q 005643 215 TGKTLFARTLAKES---GLPFVFASGAEFTDS-------------EKS----GAARINEMFSIARRNAPAFVFVDEIDAI 274 (686)
Q Consensus 215 TGKT~LAralA~e~---g~~fi~is~s~~~~~-------------~~~----~~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (686)
||||+||++++.+. |-|.++|+..+..+. .+. +++.++.+|..|+..+||+||+|++|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999998876 677888887765422 123 6788999999999999999999999999
Q ss_pred hccCC----CC---ChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 005643 275 AGRHA----RK---DPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (686)
Q Consensus 275 ~~~~~----~~---~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (686)
.+++. .+ ..-..+.++++|.+|++..... +|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~---------~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS---------NTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHT---------TCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccC---------CeEEE-Eeccc
Confidence 87731 11 1334557999999999855443 36666 77774
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.24 E-value=4.6e-11 Score=155.12 Aligned_cols=146 Identities=22% Similarity=0.303 Sum_probs=97.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHH-HHHhCCCeEEEeCccccchhhhHHHHHHHHHHHH----H-----------hcCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTL-AKESGLPFVFASGAEFTDSEKSGAARINEMFSIA----R-----------RNAPAFV 266 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAral-A~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~A----k-----------~~~P~IL 266 (686)
..+++||+||||||||++|+.+ +...+.+++.++++..... ..+...++.. + ...++||
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~-----~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT-----EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH-----HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH-----HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 4579999999999999999554 5555778888888876543 1233333322 1 1235899
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC-----CCccccccCCccceEEE
Q 005643 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-----ELDLEFVRPGRIDRRLY 341 (686)
Q Consensus 267 fIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~ 341 (686)
||||++.-...+ .+.......+.+++. ..++..... ..+..-.++.+|||||+|. .|+++++| || ..+.
T Consensus 1341 FiDEinmp~~d~-yg~q~~lelLRq~le-~gg~yd~~~-~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~ 1414 (2695)
T 4akg_A 1341 FCDEINLPKLDK-YGSQNVVLFLRQLME-KQGFWKTPE-NKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILY 1414 (2695)
T ss_dssp EEETTTCSCCCS-SSCCHHHHHHHHHHH-TSSEECTTT-CCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEE
T ss_pred Eecccccccccc-cCchhHHHHHHHHHh-cCCEEEcCC-CcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEE
Confidence 999999643222 222233344555542 222221111 1122225699999999994 89999999 99 8899
Q ss_pred eCCCCHHHHHHHHHHHhc
Q 005643 342 IGLPDAKQRVQIFDVHSA 359 (686)
Q Consensus 342 v~~Pd~~eR~~Il~~~l~ 359 (686)
++.|+.+++..|+..++.
T Consensus 1415 i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999999987764
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=5.7e-11 Score=125.52 Aligned_cols=125 Identities=12% Similarity=0.093 Sum_probs=96.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh------CCCeEEEeCccccchhhhHHHHHHHHHHHHHhcC----CeEEEEccchh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES------GLPFVFASGAEFTDSEKSGAARINEMFSIARRNA----PAFVFVDEIDA 273 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~------g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~----P~ILfIDEiDa 273 (686)
+..+|||||||+|||++|+++|+.+ ...++.++++.- ..+...++.+.+.+.... ..|+||||+|.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~----~~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC----CCCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 4589999999999999999999874 345666665421 123445778887776432 47999999999
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCCCCHHHHHHH
Q 005643 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (686)
Q Consensus 274 l~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~I 353 (686)
+. ....|.|+..|+.... .+++|.+||.+..+.+++++ | .+.|++|+.++..+.
T Consensus 94 lt----------~~a~naLLk~LEep~~-----------~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 94 MT----------QQAANAFLKALEEPPE-----------YAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDL 147 (305)
T ss_dssp BC----------HHHHHHTHHHHHSCCT-----------TEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHH
T ss_pred hC----------HHHHHHHHHHHhCCCC-----------CeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHH
Confidence 94 2357889999987543 36788888889999999999 8 799999999999999
Q ss_pred HHHHh
Q 005643 354 FDVHS 358 (686)
Q Consensus 354 l~~~l 358 (686)
++..+
T Consensus 148 L~~~~ 152 (305)
T 2gno_A 148 VKEKI 152 (305)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88766
No 89
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.19 E-value=3.7e-11 Score=103.50 Aligned_cols=71 Identities=23% Similarity=0.466 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 346 DAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 346 d~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
|.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|++++...|+++||..|++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999986
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.17 E-value=6e-11 Score=114.66 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=83.4
Q ss_pred CcccccceecC-cccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCccc
Q 005643 166 TKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEF 240 (686)
Q Consensus 166 ~~~~f~dvvG~-~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~~ 240 (686)
.+.+|+++++. ++.++.++.+..++.+- ....+.+++|+||||||||+|++++++.+ |..++++++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45689999874 34555666666665543 22346789999999999999999999876 778888887776
Q ss_pred cchhhhHHHH--HHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEE
Q 005643 241 TDSEKSGAAR--INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFIC 318 (686)
Q Consensus 241 ~~~~~~~~~~--vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIa 318 (686)
.......... ...++... ..|.+|+|||++... .+......+..++..... .+..+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~-----~~~~~~~~l~~ll~~~~~-------------~~~~ii~ 138 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER-----LSDWQRELISYIITYRYN-------------NLKSTII 138 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC-----CCHHHHHHHHHHHHHHHH-------------TTCEEEE
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc-----CCHHHHHHHHHHHHHHHH-------------cCCCEEE
Confidence 5442111100 11222222 357899999998652 233444555666655421 1146777
Q ss_pred ecCCCC
Q 005643 319 ATNRPD 324 (686)
Q Consensus 319 aTN~p~ 324 (686)
|||.+.
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 888754
No 91
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.09 E-value=2.1e-10 Score=97.51 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 346 DAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 346 d~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
|.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|++++...|+++||..|+.++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 67899999999999999888999999999999999999999999999999999989999999999999874
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.06 E-value=7.1e-10 Score=120.88 Aligned_cols=214 Identities=20% Similarity=0.227 Sum_probs=123.2
Q ss_pred ccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhh
Q 005643 170 YKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKS 246 (686)
Q Consensus 170 f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~ 246 (686)
|.+++|....-+.+.+.+..+.. ....|||+|++|||||++|+++.... +.||+.++|+.+.+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 44566766443333333333222 24568999999999999999998765 469999999987653211
Q ss_pred HH-------------HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCccccccccc
Q 005643 247 GA-------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQA 313 (686)
Q Consensus 247 ~~-------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ 313 (686)
.. .....+|+.|. ..+||||||+.+.. ..+..|+..|+...-...+.......+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 272 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSL----------EAQAKLLRVIESGKFYRLGGRKEIEVN 272 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCH----------HHHHHHHHHHHHSEECCBTCCSBEECC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCCH----------HHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 00 00123444443 36999999999942 355666666654322111111223346
Q ss_pred EEEEEecCCCCCCccccccCCccce-------EEEeCCCCHHHHH----HHHHHHhc----CC--Cc--cccccHHHHHH
Q 005643 314 VIFICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQRV----QIFDVHSA----GK--QL--AEDVNFEELVF 374 (686)
Q Consensus 314 ViVIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR~----~Il~~~l~----~~--~l--~~dvdl~~La~ 374 (686)
+.||+|||.. +. .+.+.|+|.. .+.+..|...+|. .+++.++. .. .. -.+.-+..|..
T Consensus 273 ~rii~at~~~--l~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 349 (387)
T 1ny5_A 273 VRILAATNRN--IK-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS 349 (387)
T ss_dssp CEEEEEESSC--HH-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH
T ss_pred EEEEEeCCCC--HH-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 8899999973 22 2222344421 3556667666553 33333332 11 11 11122455555
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 005643 375 RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVL 412 (686)
Q Consensus 375 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al 412 (686)
...-.+.++|+|+++.|+..+ ....|+.+|+...+
T Consensus 350 ~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 350 YPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp SCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 543345679999999988766 23578888875443
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.98 E-value=4.3e-10 Score=110.42 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=66.8
Q ss_pred CcccccceecCc-ccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcccc
Q 005643 166 TKSMYKEVVLGG-DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFT 241 (686)
Q Consensus 166 ~~~~f~dvvG~~-e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~ 241 (686)
...+|+++++.+ ..++.++.+..++.+... ...+++++|+||||||||++|+++++++ +.++++++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 456899998876 344455555555543310 1134899999999999999999999877 7789889888765
Q ss_pred chhhhH--HHHHHHHHHHHHhcCCeEEEEccchhhh
Q 005643 242 DSEKSG--AARINEMFSIARRNAPAFVFVDEIDAIA 275 (686)
Q Consensus 242 ~~~~~~--~~~vr~lF~~Ak~~~P~ILfIDEiDal~ 275 (686)
...... ...+..++..... +.+|||||++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 432110 0012233333332 3599999997653
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.97 E-value=8.8e-10 Score=121.42 Aligned_cols=215 Identities=13% Similarity=0.105 Sum_probs=125.8
Q ss_pred eecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHH-HHHhCCCeEEEeCccccchhhhHHH--
Q 005643 173 VVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTL-AKESGLPFVFASGAEFTDSEKSGAA-- 249 (686)
Q Consensus 173 vvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAral-A~e~g~~fi~is~s~~~~~~~~~~~-- 249 (686)
|.|++++|..|.-.+ .....+ ++..-+|||.|+||| ||++|+++ ++-+.. .+++++.. ....+....
T Consensus 215 I~G~e~vK~aLll~L--~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~-ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL--FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRR-TELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHH--TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGG-CCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHH--cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCC-CCccCceEEEE
Confidence 667777665543321 111111 233447999999999 99999999 665433 22232211 000000000
Q ss_pred -----H-HHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC
Q 005643 250 -----R-INEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP 323 (686)
Q Consensus 250 -----~-vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p 323 (686)
. -...+..|. ..|+|||||+.+. ..++..|++.|+...-.-. +. ..+.++.||||+|..
T Consensus 285 ~~tG~~~~~G~l~LAd---gGvl~lDEIn~~~----------~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 285 EDRGWALRAGAAVLAD---GGILAVDHLEGAP----------EPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAAINPG 349 (506)
T ss_dssp ESSSEEEEECHHHHTT---TSEEEEECCTTCC----------HHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEEECCC
T ss_pred cCCCcccCCCeeEEcC---CCeeehHhhhhCC----------HHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEEeCcc
Confidence 0 001122232 3599999999884 3467888888876433222 11 445568999999986
Q ss_pred C-----------CCccccccCCccceEEE-eCCCCHHH-------------HHHHHHHHhc----CCCcccccc--HHHH
Q 005643 324 D-----------ELDLEFVRPGRIDRRLY-IGLPDAKQ-------------RVQIFDVHSA----GKQLAEDVN--FEEL 372 (686)
Q Consensus 324 ~-----------~LD~aLlrpgRFd~~I~-v~~Pd~~e-------------R~~Il~~~l~----~~~l~~dvd--l~~L 372 (686)
+ .|++++++ |||..+. ++.|+.+. ..+++. +.+ ...+.+++. +..+
T Consensus 350 ~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHH
T ss_pred cccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHH
Confidence 5 78899999 9987544 45565433 122221 222 122222210 1111
Q ss_pred ------HH--------hccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 005643 373 ------VF--------RTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQ 415 (686)
Q Consensus 373 ------a~--------~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~ 415 (686)
.. ...|.|++.+..+++-|...|..+++..++.+|+..|+.-+
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 10 24578999999999999999999999999999999998743
No 95
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.94 E-value=2.4e-10 Score=97.08 Aligned_cols=69 Identities=29% Similarity=0.462 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 005643 348 KQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 416 (686)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~~~ 416 (686)
++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|++.|++++...|+++||..|+.+++
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 479999999999998888999999999999999999999999999999999999999999999999864
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.87 E-value=9.6e-09 Score=96.93 Aligned_cols=105 Identities=12% Similarity=0.248 Sum_probs=68.6
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHA 279 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~ 279 (686)
....++|+||+|+|||+|++++++.+ |..++++++.++... +....|.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~lLilDE~~~~~~~-- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------DAAFEAEYLAVDQVEKLGNE-- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------GGGGGCSEEEEESTTCCCSH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------HHHhCCCEEEEeCccccChH--
Confidence 35679999999999999999999987 777899998887654 11235789999999876321
Q ss_pred CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecC-CCCCCc--cccccCCccceEEEe
Q 005643 280 RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATN-RPDELD--LEFVRPGRIDRRLYI 342 (686)
Q Consensus 280 ~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN-~p~~LD--~aLlrpgRFd~~I~v 342 (686)
....+..+++.+.... ..++|.||| .|..+. +.|.+ ||..-..+
T Consensus 99 -----~~~~l~~li~~~~~~g------------~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 99 -----EQALLFSIFNRFRNSG------------KGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp -----HHHHHHHHHHHHHHHT------------CCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred -----HHHHHHHHHHHHHHcC------------CcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 1334445555443210 122444555 455443 67777 77544433
No 97
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.85 E-value=8.1e-09 Score=111.76 Aligned_cols=198 Identities=21% Similarity=0.245 Sum_probs=114.0
Q ss_pred cceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCC--CeEEEeCccccchhhhHH
Q 005643 171 KEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAEFTDSEKSGA 248 (686)
Q Consensus 171 ~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~--~fi~is~s~~~~~~~~~~ 248 (686)
.+++|.......+.+.+..+.. ....+|++|++||||+++|+++....+. +|+.++|+.+.+......
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 3566776555555554443322 2345999999999999999999887654 399999998765421110
Q ss_pred -------------HHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEE
Q 005643 249 -------------ARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVI 315 (686)
Q Consensus 249 -------------~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~Vi 315 (686)
......|+.|. ...||||||+.+.. ..+..|+..|+.......+.......++.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~r 265 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELDQ----------RVQAKLLRVLETGSFTRLGGNQKIEVDIR 265 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSCH----------HHHHHHHHHHHHSEECCBTCCCBEECCCE
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhCCH----------HHHHHHHHHHHhCCcccCCCCcceeeeeE
Confidence 00123455553 35899999999942 35566777775432221111122234588
Q ss_pred EEEecCCCCCCccccccCCccce-------EEEeCCCCHHHH----HHHHHHHhcC------CC---ccccccHHHHHHh
Q 005643 316 FICATNRPDELDLEFVRPGRIDR-------RLYIGLPDAKQR----VQIFDVHSAG------KQ---LAEDVNFEELVFR 375 (686)
Q Consensus 316 VIaaTN~p~~LD~aLlrpgRFd~-------~I~v~~Pd~~eR----~~Il~~~l~~------~~---l~~dvdl~~La~~ 375 (686)
+|+|||.. +.. ....|+|.. .+.+..|...+| ..+++.++.. .. +. +.-+..|...
T Consensus 266 ii~at~~~--l~~-~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~L~~~ 341 (368)
T 3dzd_A 266 VISATNKN--LEE-EIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELS-EETKEYLMKQ 341 (368)
T ss_dssp EEEEESSC--HHH-HHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBC-HHHHHHHHTC
T ss_pred EEEecCCC--HHH-HHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcC-HHHHHHHHhC
Confidence 99999963 222 222344432 445555655554 3444444321 11 22 2224556655
Q ss_pred ccCCCHHHHHHHHHHHHHHH
Q 005643 376 TVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 376 t~G~sgadL~~lv~eA~~~A 395 (686)
..--+.++|.|+++.|+..+
T Consensus 342 ~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCTTHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 53346788999998887654
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.84 E-value=1.8e-07 Score=98.67 Aligned_cols=185 Identities=11% Similarity=0.091 Sum_probs=110.6
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc-----c
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT-----D 242 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~-----~ 242 (686)
.....++|-++ ++..+.. +.. ..++|+||+|+|||+|++.++++.+.+++++++.... .
T Consensus 10 ~~~~~~~gR~~---el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 10 DNRKDFFDREK---EIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp CSGGGSCCCHH---HHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CCHHHhcChHH---HHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34566778763 4555555 443 3799999999999999999999988888888876531 0
Q ss_pred h---hhhH---------------------------------------HHHHHHHHHHHHhc--CCeEEEEccchhhhccC
Q 005643 243 S---EKSG---------------------------------------AARINEMFSIARRN--APAFVFVDEIDAIAGRH 278 (686)
Q Consensus 243 ~---~~~~---------------------------------------~~~vr~lF~~Ak~~--~P~ILfIDEiDal~~~~ 278 (686)
. ...- ...+..+++..... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 0 0000 01133444444332 38999999999985310
Q ss_pred CCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCc---------cccccCCccceEEEeCCCCHHH
Q 005643 279 ARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD---------LEFVRPGRIDRRLYIGLPDAKQ 349 (686)
Q Consensus 279 ~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD---------~aLlrpgRFd~~I~v~~Pd~~e 349 (686)
+......+..+..... ++.+|.|++....+. ..+ .||+...+.+++.+.++
T Consensus 154 ---~~~~~~~l~~~~~~~~---------------~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e 213 (357)
T 2fna_A 154 ---GVNLLPALAYAYDNLK---------------RIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREE 213 (357)
T ss_dssp ---TCCCHHHHHHHHHHCT---------------TEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHH
T ss_pred ---chhHHHHHHHHHHcCC---------------CeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHH
Confidence 1112223333333210 255666655432111 112 24666789999999999
Q ss_pred HHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHH
Q 005643 350 RVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNE 390 (686)
Q Consensus 350 R~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~e 390 (686)
..++++..+.......+ +...+...+.|+ +.-+..++..
T Consensus 214 ~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 214 AIEFLRRGFQEADIDFK-DYEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHHTCCCC-CHHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHhCCC-HHHHHHHHHH
Confidence 99999876542222222 237788888775 5556666553
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.81 E-value=3e-09 Score=112.35 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=72.4
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeC--ccccchh-hhHHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASG--AEFTDSE-KSGAARINEMFSIARRNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~--s~~~~~~-~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (686)
|....+.++|+||||||||+||.++|.+.|.++++++. .+..... ......+..+++...... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 44555668999999999999999999876656455554 3222221 223344555566555544 999999999954
Q ss_pred cCCC--CChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCcccc
Q 005643 277 RHAR--KDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEF 330 (686)
Q Consensus 277 ~~~~--~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aL 330 (686)
.... ......+.+.+++..|.++.... ++.+|++|| +...|+++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~---------gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASR---------GCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHH---------TCEEEEECC-CSSCSSSH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhC---------CCEEEEEeC-CcccchhH
Confidence 3221 11112345667777776543322 367888888 56666665
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.77 E-value=6.4e-09 Score=109.84 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=62.7
Q ss_pred cccccceecCc-ccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCcccc
Q 005643 167 KSMYKEVVLGG-DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFT 241 (686)
Q Consensus 167 ~~~f~dvvG~~-e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~~~ 241 (686)
+.+|+++++.+ ..+..+..+..|+.+.. ...+.+++|+||||||||+||+++|.++ |.++++++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 46899998765 33344555555554431 1135799999999999999999998755 4788888887765
Q ss_pred chhhh--HHHHHHHHHHHHHhcCCeEEEEccchhh
Q 005643 242 DSEKS--GAARINEMFSIARRNAPAFVFVDEIDAI 274 (686)
Q Consensus 242 ~~~~~--~~~~vr~lF~~Ak~~~P~ILfIDEiDal 274 (686)
..... ........+.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 43111 0111122222222 3469999999765
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.74 E-value=6.8e-07 Score=94.05 Aligned_cols=188 Identities=17% Similarity=0.098 Sum_probs=106.1
Q ss_pred ccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc------
Q 005643 168 SMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT------ 241 (686)
Q Consensus 168 ~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~------ 241 (686)
..-..++|.++..+.|.+.+. . | +.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~---~-------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLE---N-------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHH---H-------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred CChHhcCChHHHHHHHHHHHh---c-------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 344567888754444444332 1 1 5899999999999999999999875 6777765431
Q ss_pred ch--h-h-------------------------------hH-HHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHH
Q 005643 242 DS--E-K-------------------------------SG-AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRR 286 (686)
Q Consensus 242 ~~--~-~-------------------------------~~-~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~ 286 (686)
.. . . .. ...++.+...+....|.+|+|||++.+.......+....
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 00 0 0 00 111222222233234899999999998531000112222
Q ss_pred HHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCc---------cccccCCccceEEEeCCCCHHHHHHHHHHH
Q 005643 287 ATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELD---------LEFVRPGRIDRRLYIGLPDAKQRVQIFDVH 357 (686)
Q Consensus 287 ~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD---------~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~ 357 (686)
..+..++... . ++.+|.|+.....+. ..+. ||+...+.+++.+.++-.++++..
T Consensus 153 ~~L~~~~~~~---~------------~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 153 ALFAYAYDSL---P------------NLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp HHHHHHHHHC---T------------TEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhc---C------------CeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHH
Confidence 2333332221 1 245555554321111 1122 466678999999999999999876
Q ss_pred hcCCCcc-ccccHHHHHHhccCCCHHHHHHHHH
Q 005643 358 SAGKQLA-EDVNFEELVFRTVGFSGADIRNLVN 389 (686)
Q Consensus 358 l~~~~l~-~dvdl~~La~~t~G~sgadL~~lv~ 389 (686)
+...... .+..+..+...+.|+ +.-+..++.
T Consensus 216 ~~~~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 216 FREVNLDVPENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp HHTTTCCCCHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 5433221 233467778888775 555665554
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.67 E-value=2.1e-07 Score=121.39 Aligned_cols=175 Identities=17% Similarity=0.189 Sum_probs=114.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCCh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP 283 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~ 283 (686)
..|+++.||||||||.+++++|+.+|.+++.++|++-... ..+..+|..+... ++.+++||++.+..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~-----~~lg~~~~g~~~~-Gaw~~~DE~nr~~~------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY-----QVLSRLLVGITQI-GAWGCFDEFNRLDE------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH-----HHHHHHHHHHHHH-TCEEEEETTTSSCH-------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh-----hHhhHHHHHHHhc-CCEeeehhhhhcCh-------
Confidence 4789999999999999999999999999999999987654 2345666666554 37999999998732
Q ss_pred hHHHHHHHHHH----HhcCCccc--CCcccccccccEEEEEecCC----CCCCccccccCCccceEEEeCCCCHHHHHHH
Q 005643 284 RRRATFEALIA----QLDGDKER--TGIDRFSLRQAVIFICATNR----PDELDLEFVRPGRIDRRLYIGLPDAKQRVQI 353 (686)
Q Consensus 284 e~~~~l~~LL~----~ld~~~~~--~~~~~~~~~~~ViVIaaTN~----p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~I 353 (686)
+....+++.+. .+...... ..+.......++.|++|.|. ...|++++++ || +.+.+..||.+...+|
T Consensus 712 evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei 788 (2695)
T 4akg_A 712 KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEM 788 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHH
Confidence 33333433332 22211100 01112333456788888884 4579999998 99 7899999999998888
Q ss_pred HHHHhcCCCcccc-----ccHHHHHHh------ccCCCHHHHHHHHHHHHHHH
Q 005643 354 FDVHSAGKQLAED-----VNFEELVFR------TVGFSGADIRNLVNESGIMS 395 (686)
Q Consensus 354 l~~~l~~~~l~~d-----vdl~~La~~------t~G~sgadL~~lv~eA~~~A 395 (686)
+-... +...... +.+-.+++. ...|.-+.+..+++.|....
T Consensus 789 ~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 789 ILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 54321 1111111 111122221 33478889999998776544
No 103
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.66 E-value=2.3e-08 Score=108.37 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=79.4
Q ss_pred hCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhc-c
Q 005643 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAG-R 277 (686)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~-~ 277 (686)
++++.+..++|+||||+|||++++++++..+..++.+.... ... ...+.. ....+++|+||++.+.. .
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~--~~~---~~~lg~------~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL--DRL---NFELGV------AIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT--TTH---HHHHGG------GTTCSCEEETTCCCSTTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc--hhH---HHHHHH------hcchhHHHHHHHHHHHHHH
Confidence 46788889999999999999999999998877665533222 000 001111 22346789999998864 2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCC
Q 005643 278 HARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL 344 (686)
Q Consensus 278 ~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~ 344 (686)
+.............+...+++. +.|+++||+++.+ +++++|||++..+....
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~--------------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGS--------------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCS--------------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhccccCcchHHHHHHHHhcCC--------------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2111111111334556666652 4678889999999 79999999988766644
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.62 E-value=3.8e-08 Score=97.49 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=81.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH--------hC-CCeEEEeCccccchhh-----------hHHH--HHHHHHHHH--H
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE--------SG-LPFVFASGAEFTDSEK-----------SGAA--RINEMFSIA--R 259 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e--------~g-~~fi~is~s~~~~~~~-----------~~~~--~vr~lF~~A--k 259 (686)
+.-.|++|+||||||++|.+.+.. .| .++++.++.++..... .... ....+++.+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 456899999999999999886433 45 7777777665532110 0000 012333332 2
Q ss_pred hcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccccCCccceE
Q 005643 260 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRR 339 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~ 339 (686)
...++||+|||++.+.+.+....+. ..++..+.... ..++-+|.+|+.++.|+.++++ |++.+
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~-----~rll~~l~~~r----------~~~~~iil~tq~~~~l~~~lr~--ri~~~ 147 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI-----PENVQWLNTHR----------HQGIDIFVLTQGPKLLDQNLRT--LVRKH 147 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC-----CHHHHGGGGTT----------TTTCEEEEEESCGGGBCHHHHT--TEEEE
T ss_pred ccCceEEEEEChhhhccCccccchh-----HHHHHHHHhcC----------cCCeEEEEECCCHHHHhHHHHH--HhheE
Confidence 3347899999999996543211111 13455444322 1235678888889999999887 99999
Q ss_pred EEeCCCCHHHH
Q 005643 340 LYIGLPDAKQR 350 (686)
Q Consensus 340 I~v~~Pd~~eR 350 (686)
+++..|....+
T Consensus 148 ~~l~~~~~~~~ 158 (199)
T 2r2a_A 148 YHIASNKMGMR 158 (199)
T ss_dssp EEEEECSSCCE
T ss_pred EEEcCcccCcc
Confidence 99988754433
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.40 E-value=3.8e-07 Score=115.61 Aligned_cols=105 Identities=19% Similarity=0.302 Sum_probs=75.4
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccch-----h------------hhHHHHHHHHHHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS-----E------------KSGAARINEMFSIAR 259 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~-----~------------~~~~~~vr~lF~~Ak 259 (686)
|++.+++++|+||||||||+||.+++.++ |..+.+++....... . ..++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47788999999999999999999997765 667777887654322 1 123355677777888
Q ss_pred hcCCeEEEEccchhhhccC---C--CC-Ch-hHHHHHHHHHHHhcCCcccCC
Q 005643 260 RNAPAFVFVDEIDAIAGRH---A--RK-DP-RRRATFEALIAQLDGDKERTG 304 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~---~--~~-~~-e~~~~l~~LL~~ld~~~~~~~ 304 (686)
..+|++||||+++++.+.. + +. +. ...+.++++|.+|.+.....+
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~ 1554 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1554 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999887632 1 11 11 145677888888877655443
No 106
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.38 E-value=3.8e-07 Score=90.33 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=63.3
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCC
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHAR 280 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~ 280 (686)
.+..+++|||||||||||++|.++|+.++-.++....+. .... +..+. ...||+|||+|.-.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f~---------l~~l~--~~kIiiLDEad~~~----- 116 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHFW---------LEPLT--DTKVAMLDDATTTC----- 116 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCGG---------GGGGT--TCSSEEEEEECHHH-----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chhh---------hcccC--CCCEEEEECCCchh-----
Confidence 334568999999999999999999999865443321110 0000 11111 23489999998432
Q ss_pred CChhHHHHHHHHHHHhcCCcccCCccccc--ccccEEEEEecCCCCCCc---cccccCCccceEEEeCCC
Q 005643 281 KDPRRRATFEALIAQLDGDKERTGIDRFS--LRQAVIFICATNRPDELD---LEFVRPGRIDRRLYIGLP 345 (686)
Q Consensus 281 ~~~e~~~~l~~LL~~ld~~~~~~~~~~~~--~~~~ViVIaaTN~p~~LD---~aLlrpgRFd~~I~v~~P 345 (686)
.+..-..+-+.+++........+.. ....-.+|.|||.+-.-+ +.|.+ |+ ..+.++.|
T Consensus 117 ----~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~~~ 179 (212)
T 1tue_A 117 ----WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI-TVFEFPNA 179 (212)
T ss_dssp ----HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC-EEEECCSC
T ss_pred ----HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE-EEEEcCCC
Confidence 1112234455566642111000000 001235778888743222 34555 77 45666543
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.23 E-value=2e-05 Score=83.65 Aligned_cols=176 Identities=12% Similarity=0.089 Sum_probs=111.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CC-CeEEEeCccccchhhhHHHHHHHHHHHHHh----cCCeEEEEccchh-
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GL-PFVFASGAEFTDSEKSGAARINEMFSIARR----NAPAFVFVDEIDA- 273 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~-~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~----~~P~ILfIDEiDa- 273 (686)
.+..+|||||+|+||+..++++++.+ +. ++..+... .. ..++.+++.+.. ....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~-----~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN-----TDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT-----CCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC-----CCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 56689999999999999999998764 32 22222111 10 123444444432 3467999999998
Q ss_pred hhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC------CCCccccccCCccceEEEeCCCCH
Q 005643 274 IAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP------DELDLEFVRPGRIDRRLYIGLPDA 347 (686)
Q Consensus 274 l~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p------~~LD~aLlrpgRFd~~I~v~~Pd~ 347 (686)
+.. ...+.|+..++..... +++|.+|+.+ ..+.+++.+ |. ..+.+.+|+.
T Consensus 89 l~~----------~~~~aLl~~le~p~~~-----------~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~ 144 (343)
T 1jr3_D 89 PNA----------AINEQLLTLTGLLHDD-----------LLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQ 144 (343)
T ss_dssp CCT----------THHHHHHHHHTTCBTT-----------EEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCT
T ss_pred CCh----------HHHHHHHHHHhcCCCC-----------eEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCH
Confidence 631 2457788887764332 3444444432 356677777 66 5789999999
Q ss_pred HHHHHHHHHHhcCCCccc-cccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 005643 348 KQRVQIFDVHSAGKQLAE-DVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 414 (686)
Q Consensus 348 ~eR~~Il~~~l~~~~l~~-dvdl~~La~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~Al~~ 414 (686)
.+....++..+....+.- +..+..|+..+.| +.+++.+.++..+..+ +...||.+++...+..
T Consensus 145 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp THHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 998888887776554332 2235666766544 6666666666555443 3447999998877654
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.21 E-value=3e-06 Score=111.40 Aligned_cols=144 Identities=22% Similarity=0.302 Sum_probs=90.5
Q ss_pred CceEEEEcCCCCcHHHHHHHH-HHHhCCCeEEEeCccccchhhhHHHHHHHHHHHH----H------------hcCCeEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTL-AKESGLPFVFASGAEFTDSEKSGAARINEMFSIA----R------------RNAPAFV 266 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAral-A~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~A----k------------~~~P~IL 266 (686)
.++|||+||||||||.+++.. ++..+.+++.++++.-... ..+...++.. + ....+|+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta-----~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP-----ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH-----HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH-----HHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 467999999999999877655 4444667888888876543 2223333320 0 0223699
Q ss_pred EEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC-----CCccccccCCccceEEE
Q 005643 267 FVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD-----ELDLEFVRPGRIDRRLY 341 (686)
Q Consensus 267 fIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~-----~LD~aLlrpgRFd~~I~ 341 (686)
||||++.-. ...-+.......+.+++..- ++-.... ..+..-.++.+|||+|.|. .|+++++| || ..+.
T Consensus 1379 FiDDiNmp~-~D~yGtQ~~ielLrqlld~~-g~yd~~~-~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi~ 1452 (3245)
T 3vkg_A 1379 FCDEINLPS-TDKYGTQRVITFIRQMVEKG-GFWRTSD-HTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-PILL 1452 (3245)
T ss_dssp EETTTTCCC-CCTTSCCHHHHHHHHHHHHS-EEEETTT-TEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEEE
T ss_pred EecccCCCC-ccccccccHHHHHHHHHHcC-CeEECCC-CeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEEE
Confidence 999998532 21122223334445554431 2211111 1122335789999999883 69999999 99 4699
Q ss_pred eCCCCHHHHHHHHHHHh
Q 005643 342 IGLPDAKQRVQIFDVHS 358 (686)
Q Consensus 342 v~~Pd~~eR~~Il~~~l 358 (686)
++.|+.+....|+..++
T Consensus 1453 i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999999976543
No 109
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.13 E-value=7.3e-06 Score=90.92 Aligned_cols=127 Identities=17% Similarity=0.300 Sum_probs=97.5
Q ss_pred CeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe---------cC---CCCCCcccc
Q 005643 263 PAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA---------TN---RPDELDLEF 330 (686)
Q Consensus 263 P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa---------TN---~p~~LD~aL 330 (686)
|.|+||||+|.+. ....+.|+..|+.... +++++++ |+ .+..|++.+
T Consensus 296 ~~VliIDEa~~l~----------~~a~~aLlk~lEe~~~-----------~~~il~tn~~~~~i~~~~~~~~~~~l~~~i 354 (456)
T 2c9o_A 296 PGVLFVDEVHMLD----------IECFTYLHRALESSIA-----------PIVIFASNRGNCVIRGTEDITSPHGIPLDL 354 (456)
T ss_dssp ECEEEEESGGGCB----------HHHHHHHHHHTTSTTC-----------CEEEEEECCSEEECBTTSSCEEETTCCHHH
T ss_pred ceEEEEechhhcC----------HHHHHHHHHHhhccCC-----------CEEEEecCCccccccccccccccccCChhH
Confidence 4699999999994 3478889988876432 2444454 33 267889999
Q ss_pred ccCCccceEEEeCCCCHHHHHHHHHHHhc--CCCccccccHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhCCCcccHHH
Q 005643 331 VRPGRIDRRLYIGLPDAKQRVQIFDVHSA--GKQLAEDVNFEELVFRT-VGFSGADIRNLVNESGIMSVRKGHSKIQQQD 407 (686)
Q Consensus 331 lrpgRFd~~I~v~~Pd~~eR~~Il~~~l~--~~~l~~dvdl~~La~~t-~G~sgadL~~lv~eA~~~A~r~~~~~It~~d 407 (686)
++ ||.. +.+++|+.++..++++..+. +..+.+ ..+..++..+ .| +++...++++.|...|..++...|+.+|
T Consensus 355 ~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~-~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~ 429 (456)
T 2c9o_A 355 LD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISE-EALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEH 429 (456)
T ss_dssp HT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHH
T ss_pred Hh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHH
Confidence 99 9965 69999999999999987764 223332 2356777776 44 8999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005643 408 IVDVLDKQ 415 (686)
Q Consensus 408 l~~Al~~~ 415 (686)
+.+|+.-.
T Consensus 430 v~~~~~~~ 437 (456)
T 2c9o_A 430 VEEISELF 437 (456)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99988653
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.08 E-value=1.2e-05 Score=82.93 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=24.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGL 230 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (686)
..++++||||||||||++|+++|+..+.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3468999999999999999999997644
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.02 E-value=2.3e-05 Score=103.32 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=110.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccccchhhhHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCCh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDP 283 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~~~~~~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~ 283 (686)
..|..+.||+|||||.+++.+|+.+|.+++.++|++-.... .+..+|.-+... .+..++|||+.+- .
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~-----~~g~i~~G~~~~-GaW~cfDEfNrl~-------~ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQ-----AMSRIFVGLCQC-GAWGCFDEFNRLE-------E 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHH-----HHHHHHHHHHHH-TCEEEEETTTSSC-------H
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHH-----HHHHHHhhHhhc-CcEEEehhhhcCC-------H
Confidence 36788999999999999999999999999999999866542 234455555443 4688999999873 2
Q ss_pred hHHHHHHHHHHH----hcCCcccCC---cccccccccEEEEEecCC----CCCCccccccCCccceEEEeCCCCHHHHHH
Q 005643 284 RRRATFEALIAQ----LDGDKERTG---IDRFSLRQAVIFICATNR----PDELDLEFVRPGRIDRRLYIGLPDAKQRVQ 352 (686)
Q Consensus 284 e~~~~l~~LL~~----ld~~~~~~~---~~~~~~~~~ViVIaaTN~----p~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~ 352 (686)
+.-..+.+.+.. +......-. +.......++.|++|.|. ...|+++|.. || +.|.+..||.+...+
T Consensus 671 ~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~e 747 (3245)
T 3vkg_A 671 RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQ 747 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHH
Confidence 222233222221 111110000 112334456788888884 3579999998 99 779999999998888
Q ss_pred HHHHHhcCCCcccc-----ccHHHHHHh------ccCCCHHHHHHHHHHHHHH
Q 005643 353 IFDVHSAGKQLAED-----VNFEELVFR------TVGFSGADIRNLVNESGIM 394 (686)
Q Consensus 353 Il~~~l~~~~l~~d-----vdl~~La~~------t~G~sgadL~~lv~eA~~~ 394 (686)
|+-. ..+..-+.. +.+-.+++. ...|.-+.+..++..|...
T Consensus 748 i~L~-s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 748 VMLY-SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp HHHH-TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHH-HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 8542 222221111 112223221 3456678888888766543
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.87 E-value=8.1e-05 Score=71.98 Aligned_cols=27 Identities=26% Similarity=0.605 Sum_probs=23.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPF 232 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~f 232 (686)
.+.|.||+|+|||||++.+++..++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999887544
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.86 E-value=5.9e-05 Score=75.19 Aligned_cols=77 Identities=17% Similarity=0.099 Sum_probs=51.7
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCccccch---------hh----------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS---------EK---------------- 245 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~~~~~---------~~---------------- 245 (686)
|++...-++|+||||+|||+|++.+|... +...+++++...... .+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 45666779999999999999999999852 456788877652100 00
Q ss_pred hHH---HHHHHHHHHHHhcCCeEEEEccchhhhc
Q 005643 246 SGA---ARINEMFSIARRNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 246 ~~~---~~vr~lF~~Ak~~~P~ILfIDEiDal~~ 276 (686)
... ..+..+.+......|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 000 1122344445556799999999998864
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.84 E-value=3.7e-05 Score=75.48 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=34.1
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~ 239 (686)
|++...-++|+||||+|||+|++.+|...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566677899999999999999999987788888888765
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.80 E-value=7.5e-05 Score=80.55 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=52.5
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhh----------------hHHHHHHHHH-HHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK----------------SGAARINEMF-SIAR 259 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~----------------~~~~~vr~lF-~~Ak 259 (686)
|.+....++|+||||+|||+||..+|..+ |.++++++...-..... .....+.... ...+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 55667789999999999999999997654 67888888765332210 0111222222 2333
Q ss_pred hcCCeEEEEccchhhhc
Q 005643 260 RNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (686)
...+.+|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46789999999999974
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.74 E-value=0.00022 Score=71.32 Aligned_cols=128 Identities=24% Similarity=0.250 Sum_probs=71.7
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHH--HH--hCCCeEEEeCccccchh-------h-----------------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLA--KE--SGLPFVFASGAEFTDSE-------K----------------------- 245 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA--~e--~g~~fi~is~s~~~~~~-------~----------------------- 245 (686)
|++...-+.|.||+|+|||+|++.++ .. .+...++++........ +
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 45566779999999999999999998 32 35555655544321100 0
Q ss_pred -------------hHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccc
Q 005643 246 -------------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQ 312 (686)
Q Consensus 246 -------------~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~ 312 (686)
........+........|.+|+|||.-++.... .........+..++..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~-~d~~~~~~~l~~l~~~l~~~------------- 171 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL-EEERKIREVLLKLNTILLEM------------- 171 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS-SSGGGHHHHHHHHHHHHHHH-------------
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc-CCHHHHHHHHHHHHHHHHHC-------------
Confidence 001112233334455789999999998886321 11223444566777666321
Q ss_pred cEEEEEecCCCCCCc-----cccccCCcc-ceEEEeC
Q 005643 313 AVIFICATNRPDELD-----LEFVRPGRI-DRRLYIG 343 (686)
Q Consensus 313 ~ViVIaaTN~p~~LD-----~aLlrpgRF-d~~I~v~ 343 (686)
++.||.+|+..+... +.+.. -+ |+.+.+.
T Consensus 172 g~tii~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 172 GVTTILTTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp CCEEEEEECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred CCeEEEEECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 245666776655441 22222 35 6766664
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.74 E-value=5.9e-05 Score=80.86 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=52.2
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchh-----h------------hHHHHHHHHHHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----K------------SGAARINEMFSIAR 259 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~-----~------------~~~~~vr~lF~~Ak 259 (686)
|++...-++|+||||+|||+||..++..+ |.++++++...-.... + .....+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45666779999999999999999997654 6778888866532211 0 01112222223344
Q ss_pred hcCCeEEEEccchhhhc
Q 005643 260 RNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (686)
...|.+|+||++.++..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999973
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.71 E-value=0.00022 Score=70.15 Aligned_cols=39 Identities=31% Similarity=0.570 Sum_probs=30.1
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s 238 (686)
|++....++|+||||+|||+|++.++... +.++++++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 45556678999999999999999998643 5566666643
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.71 E-value=6.9e-05 Score=79.24 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=62.8
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCccc--cch-------hhh---------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEF--TDS-------EKS--------------- 246 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~~--~~~-------~~~--------------- 246 (686)
|++...-++|+||||+|||+||..+|..+ +.++++++...- .+. .+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45666779999999999999999999875 567888887753 110 000
Q ss_pred -HH---HHHHHHHHHHHh-cCCeEEEEccchhhhccCCC--CC-hhHHHHHHHHHHHhcCC
Q 005643 247 -GA---ARINEMFSIARR-NAPAFVFVDEIDAIAGRHAR--KD-PRRRATFEALIAQLDGD 299 (686)
Q Consensus 247 -~~---~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~--~~-~e~~~~l~~LL~~ld~~ 299 (686)
.. ..+..+....+. ..+.+|+||.+..+...... ++ .++.+.+.+++..|...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~l 243 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRL 243 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHH
Confidence 01 122334444555 67899999999998642111 11 12333556666666543
No 120
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.68 E-value=0.00014 Score=77.96 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=61.9
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchh-----------------hhHHHHHHHHHHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----------------KSGAARINEMFSIAR 259 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~-----------------~~~~~~vr~lF~~Ak 259 (686)
|++...-++|+||||+|||+|+..+|..+ +.++++++........ ......+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45666778999999999999999998764 6778888876532210 011122222223334
Q ss_pred hcCCeEEEEccchhhhccC---C-CCCh---hHHHHHHHHHHHhcCC
Q 005643 260 RNAPAFVFVDEIDAIAGRH---A-RKDP---RRRATFEALIAQLDGD 299 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~~~---~-~~~~---e~~~~l~~LL~~ld~~ 299 (686)
...|.+++||.+..+.++. + .++. ...+.+.+++..|...
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~l 183 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGS 183 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999886521 1 1111 2334566666655544
No 121
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.60 E-value=0.00012 Score=78.68 Aligned_cols=77 Identities=23% Similarity=0.341 Sum_probs=52.8
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchh-----h-----------hHHHHHHHHHH-HHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE-----K-----------SGAARINEMFS-IAR 259 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~-----~-----------~~~~~vr~lF~-~Ak 259 (686)
|.+....++|+||||+|||+||..+|..+ |.++++++...-.... + .....+..+.. ..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46667789999999999999999997653 6788888875432211 0 01122233333 233
Q ss_pred hcCCeEEEEccchhhhc
Q 005643 260 RNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (686)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999864
No 122
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.59 E-value=9.2e-05 Score=94.22 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=57.6
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchhhh-----------------HHHHHHHHHHHHH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS-----------------GAARINEMFSIAR 259 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~~~-----------------~~~~vr~lF~~Ak 259 (686)
|++....++|+||||||||+||.+++.+ .|.+.++++..+..+.... +....+......+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 4677889999999999999999999654 4889999998886654221 1122333444455
Q ss_pred hcCCeEEEEccchhhhc
Q 005643 260 RNAPAFVFVDEIDAIAG 276 (686)
Q Consensus 260 ~~~P~ILfIDEiDal~~ 276 (686)
...|++|+||++.++.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 67799999999999954
No 123
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.58 E-value=0.0011 Score=75.18 Aligned_cols=172 Identities=10% Similarity=0.090 Sum_probs=91.4
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEEeCcccc
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFASGAEFT 241 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~-------g~~fi~is~s~~~ 241 (686)
....++|-+. ++.++...+... ...++-|+|+||+|+|||+||+.++... ...++.++.+...
T Consensus 122 ~~~~~vGR~~---~l~~L~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 122 RPVVFVTRKK---LVNAIQQKLSKL-------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CCSSCCCCHH---HHHHHHHHHTTS-------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCCeecccHH---HHHHHHHHHhcc-------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 3456788874 444555555432 1235679999999999999999996421 1224444433321
Q ss_pred ch-----hh-----------------hHHHHHH-HHHHHHHh-cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005643 242 DS-----EK-----------------SGAARIN-EMFSIARR-NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (686)
Q Consensus 242 ~~-----~~-----------------~~~~~vr-~lF~~Ak~-~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld 297 (686)
.. .. .....+. .+...... ..|++|+||+++... .+..+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~----------------~l~~l- 254 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW----------------VLKAF- 254 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH----------------HHHTT-
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH----------------HHHHh-
Confidence 00 00 0001111 12222222 268999999997431 12222
Q ss_pred CCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEe---CCCCHHHHHHHHHHHhcCCCccccccHHHHHH
Q 005643 298 GDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYI---GLPDAKQRVQIFDVHSAGKQLAEDVNFEELVF 374 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v---~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~ 374 (686)
. .+..||.||..+..... . . + ..+.+ ...+.++-.++|..++.............|++
T Consensus 255 --~-----------~~~~ilvTsR~~~~~~~-~-~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~ 315 (591)
T 1z6t_A 255 --D-----------SQCQILLTTRDKSVTDS-V-M-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIK 315 (591)
T ss_dssp --C-----------SSCEEEEEESCGGGGTT-C-C-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHH
T ss_pred --c-----------CCCeEEEECCCcHHHHh-c-C-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 1 12466667765432211 1 1 1 22333 46788888999987765422111234678898
Q ss_pred hccCCCHHHHHHH
Q 005643 375 RTVGFSGADIRNL 387 (686)
Q Consensus 375 ~t~G~sgadL~~l 387 (686)
.+.|. +--|..+
T Consensus 316 ~~~G~-PLal~~~ 327 (591)
T 1z6t_A 316 ECKGS-PLVVSLI 327 (591)
T ss_dssp HHTTC-HHHHHHH
T ss_pred HhCCC-cHHHHHH
Confidence 88885 4444443
No 124
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.58 E-value=0.00033 Score=69.05 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHhC---------CCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESG---------LPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g---------~~fi~is~s~ 239 (686)
|++...-+.|.||+|+|||+|++.++...- ...++++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 456667789999999999999999998542 2366776654
No 125
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.52 E-value=0.00071 Score=74.59 Aligned_cols=100 Identities=23% Similarity=0.351 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCeEEEEccchhhhccCC--CCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEec----CCCC
Q 005643 251 INEMFSIARRNAPAFVFVDEIDAIAGRHA--RKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICAT----NRPD 324 (686)
Q Consensus 251 vr~lF~~Ak~~~P~ILfIDEiDal~~~~~--~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaT----N~p~ 324 (686)
.+...+.|..+ .|+|+||||.++.+.. +++...+...+.||..|++...+.... -....+|++|+|. +.|.
T Consensus 241 ~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~-~~d~~~ilfI~~gaf~~~~~~ 317 (444)
T 1g41_A 241 KQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG-MVKTDHILFIASGAFQVARPS 317 (444)
T ss_dssp HHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTE-EEECTTCEEEEEECCSSCCGG
T ss_pred HHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccc-eecCCcEEEEeccccccCChh
Confidence 44555555333 4999999999975432 233344557789999999865433211 1234568999987 2344
Q ss_pred CCccccccCCccceEEEeCCCCHHHHHHHHH
Q 005643 325 ELDLEFVRPGRIDRRLYIGLPDAKQRVQIFD 355 (686)
Q Consensus 325 ~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~ 355 (686)
.+-|.|+. ||+.+|.++.++.++..+|+.
T Consensus 318 dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 318 DLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 45577887 999999999999999999984
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.52 E-value=0.00026 Score=75.55 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=61.0
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCccccch--h-------hh---------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS--E-------KS--------------- 246 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~~~~~--~-------~~--------------- 246 (686)
|++...-++|+||||+|||+||..+|..+ +.++++++...-... . +.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45666678999999999999999999873 557888887653110 0 00
Q ss_pred -H---HHHHHHHHHHHHh--cCCeEEEEccchhhhccCCC--CC-hhHHHHHHHHHHHhcCC
Q 005643 247 -G---AARINEMFSIARR--NAPAFVFVDEIDAIAGRHAR--KD-PRRRATFEALIAQLDGD 299 (686)
Q Consensus 247 -~---~~~vr~lF~~Ak~--~~P~ILfIDEiDal~~~~~~--~~-~e~~~~l~~LL~~ld~~ 299 (686)
. ...+..+....+. ..+.+|+||.+..+...... ++ .++.+.+.+++..|...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~l 259 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKI 259 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 0 0112223344455 67899999999998743111 11 12233456666555543
No 127
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.45 E-value=0.0016 Score=65.29 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=85.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc--------ccchhhh-------------HHHHHHHHHHHHHh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE--------FTDSEKS-------------GAARINEMFSIARR 260 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~--------~~~~~~~-------------~~~~vr~lF~~Ak~ 260 (686)
-.|++.|+||+|||+++-.+|..+ |..++.++... +...... ....+..+. .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----K 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----h
Confidence 469999999999999998887654 77776655532 1100000 001122222 2
Q ss_pred cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCC-----------------
Q 005643 261 NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRP----------------- 323 (686)
Q Consensus 261 ~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p----------------- 323 (686)
..|.+++|||+-..... ........+.+..++. . ++=|++|+|.-
T Consensus 83 ~~pdlvIVDElG~~~~~-~~r~~~~~qDV~~~l~---s--------------gidVitT~Nlqh~esl~d~v~~itg~~v 144 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAP-GSRHTKRWQDIQELLA---A--------------GIDVYTTVNVQHLESLNDQVRGITGVQV 144 (228)
T ss_dssp HCCSEEEESCTTCBCCT-TCSSSBHHHHHHHHHH---T--------------TCEEEEEEEGGGBGGGHHHHHHHHSCCC
T ss_pred cCCCEEEEeCCCCCCcc-cchhHHHHHHHHHHHc---C--------------CCCEEEEccccccccHHHHHHHHcCCCc
Confidence 36899999998754211 2223333333333221 1 24566777621
Q ss_pred -CCCccccccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccccHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005643 324 -DELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSV 396 (686)
Q Consensus 324 -~~LD~aLlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t~G~sgadL~~lv~eA~~~A~ 396 (686)
+.++..+++ +-|....++.|..+-+.. ...++-...+..-..+.. =|+...|..|-.-|...++
T Consensus 145 ~e~vpd~~~~--~a~~v~lvD~~p~~l~~r----l~~g~vy~~~~~~~a~~~---~f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 145 RETLPDWVLQ--EAFDLVLIDLPPRELLER----LRDGKVYVPEQARAAIDA---FFTQTNLTALREMAMQTAA 209 (228)
T ss_dssp CSCBCHHHHH--TCSEEEEBCCCHHHHHHH----HHTTCCCCTTCCHHHHHH---HCCHHHHHHHHHHHHHHHH
T ss_pred CCcCccHHHh--hCCeEEEecCCHHHHHHH----HHCCCccChhHHHHHHHh---hhchhhHHHHHHHHHHHHH
Confidence 345555555 566777778876663333 333333332222222332 2677777776655555554
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00069 Score=67.40 Aligned_cols=40 Identities=40% Similarity=0.602 Sum_probs=31.0
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~ 239 (686)
|.+...-++|+||||+|||+|+..+|.. .+.++++++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4566677899999999999999888654 366777777543
No 129
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.40 E-value=9.2e-05 Score=70.36 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
++-|+|+|+||+|||+++++++..++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4579999999999999999999999999887765433
No 130
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.37 E-value=0.0008 Score=67.01 Aligned_cols=40 Identities=45% Similarity=0.527 Sum_probs=31.2
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHH----HhCCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAK----ESGLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~----e~g~~fi~is~s~ 239 (686)
|.++..-++++|+||+|||+||..+|. ..+.++++++...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 456667799999999999999988754 3477888887553
No 131
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.37 E-value=0.00035 Score=73.55 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=49.0
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeCccccchh-----hh-----------HHHHH-HHHHHH-
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASGAEFTDSE-----KS-----------GAARI-NEMFSI- 257 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~s~~~~~~-----~~-----------~~~~v-r~lF~~- 257 (686)
.+.. -++++||||+|||+|+-.++.++ |..++++++..-.... +. ....+ -.+.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4444 57899999999999988775543 6778889876533210 00 01111 122222
Q ss_pred --HHhcCCeEEEEccchhhhcc
Q 005643 258 --ARRNAPAFVFVDEIDAIAGR 277 (686)
Q Consensus 258 --Ak~~~P~ILfIDEiDal~~~ 277 (686)
.+...|.+|+||-|.++.++
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBCC
T ss_pred HHhhccCceEEEEecccccccc
Confidence 35567999999999999753
No 132
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.32 E-value=0.0003 Score=74.06 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------------C----CCeEEEeCccc--cchhhh------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------------G----LPFVFASGAEF--TDSEKS------------ 246 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------------g----~~fi~is~s~~--~~~~~~------------ 246 (686)
|++...-++|+||||+|||+||..+|..+ | .++++++...- .+....
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45666778999999999999999998753 3 57788887653 110000
Q ss_pred -----------HH---HHHHHHHHHHHh-cCCeEEEEccchhhhccCCC--CC-hhHHHHHHHHHHHhcCC
Q 005643 247 -----------GA---ARINEMFSIARR-NAPAFVFVDEIDAIAGRHAR--KD-PRRRATFEALIAQLDGD 299 (686)
Q Consensus 247 -----------~~---~~vr~lF~~Ak~-~~P~ILfIDEiDal~~~~~~--~~-~e~~~~l~~LL~~ld~~ 299 (686)
.. ..+..+....+. ..+.+|+||.+..+...... ++ .++.+.+.+++..|...
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~l 244 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKL 244 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 00 112223344444 56889999999998642111 11 12334556666665543
No 133
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.29 E-value=0.00013 Score=69.83 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
++.|+|.||||+|||++++.+|..+|.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999988754
No 134
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.27 E-value=0.00084 Score=73.18 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=57.5
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEEeCccccch---------hhh---------------
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---------GLPFVFASGAEFTDS---------EKS--------------- 246 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---------g~~fi~is~s~~~~~---------~~~--------------- 246 (686)
|++...-++|+||||+|||+|++.+|-.. +...++++....... .+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56667779999999999999999776433 234788887652111 000
Q ss_pred -H---HHHHHHHHHHHHhcCCeEEEEccchhhhccCCC--CC-hhHHHHHHHHHHHhcC
Q 005643 247 -G---AARINEMFSIARRNAPAFVFVDEIDAIAGRHAR--KD-PRRRATFEALIAQLDG 298 (686)
Q Consensus 247 -~---~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~--~~-~e~~~~l~~LL~~ld~ 298 (686)
. ...+..+........|.+|+||++-.+...... ++ .++.+.+..++..|..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~ 312 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQR 312 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHH
Confidence 0 111223333444567999999999988643211 11 2333344555555544
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.27 E-value=0.0007 Score=72.41 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=32.1
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHhC---------CCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESG---------LPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g---------~~fi~is~s~ 239 (686)
|++...-+.|+||||+|||+|++.++.... -.+++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 566677789999999999999999998762 3557777654
No 136
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.26 E-value=0.00058 Score=69.35 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 178 e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
+.+..++.++..+.... .....|..++|.|+||+|||++|+.++..++.+++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 10 EFKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34445555544433321 124557789999999999999999999999877777777665
No 137
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.25 E-value=0.0032 Score=77.10 Aligned_cols=172 Identities=9% Similarity=0.019 Sum_probs=95.1
Q ss_pred cccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh---C----CCeEEEeCcccc
Q 005643 169 MYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES---G----LPFVFASGAEFT 241 (686)
Q Consensus 169 ~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~---g----~~fi~is~s~~~ 241 (686)
.-..++|.++. +.++.+.|... ...++-|.|+|++|+|||+||+.+++.. . ..++.++.+...
T Consensus 122 ~~~~~vgR~~~---~~~l~~~l~~~-------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 122 RPVIFVTRKKL---VHAIQQKLWKL-------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CCSSCCCCHHH---HHHHHHHHHTT-------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CCceeccHHHH---HHHHHHHHhhc-------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 34567888754 44444444322 1235678899999999999999997652 1 123355544321
Q ss_pred ch-hh---------------------hHHHHHHHHHHHHHh--cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005643 242 DS-EK---------------------SGAARINEMFSIARR--NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (686)
Q Consensus 242 ~~-~~---------------------~~~~~vr~lF~~Ak~--~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld 297 (686)
.. .. .....+...+..... ..+.+|+||+++... .++
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------------~~~ 252 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------------VLK 252 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------HHT
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------HHH
Confidence 10 00 011122222222222 337899999998541 122
Q ss_pred CCcccCCcccccccccEEEEEecCCCCCCccccccCCccceEEEeCC-CCHHHHHHHHHHHhcCCCccccccHHHHHHhc
Q 005643 298 GDKERTGIDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGL-PDAKQRVQIFDVHSAGKQLAEDVNFEELVFRT 376 (686)
Q Consensus 298 ~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLlrpgRFd~~I~v~~-Pd~~eR~~Il~~~l~~~~l~~dvdl~~La~~t 376 (686)
.+.. +..||.||..+...... . .....+.++. .+.++-.++|..+.....-.......+|++..
T Consensus 253 ~~~~-----------~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~ 317 (1249)
T 3sfz_A 253 AFDN-----------QCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKEC 317 (1249)
T ss_dssp TTCS-----------SCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHT
T ss_pred hhcC-----------CCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHh
Confidence 2211 24677788765443211 1 1234577875 88888889998776443322223467888888
Q ss_pred cCCCHHHHH
Q 005643 377 VGFSGADIR 385 (686)
Q Consensus 377 ~G~sgadL~ 385 (686)
.|. |-.|+
T Consensus 318 ~gl-PLal~ 325 (1249)
T 3sfz_A 318 KGS-PLVVS 325 (1249)
T ss_dssp TTC-HHHHH
T ss_pred CCC-HHHHH
Confidence 775 33344
No 138
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.23 E-value=0.00012 Score=71.03 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=38.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCcc--------ccchhhh-----HHHHHHHHHHHHHhcCCeEEEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE--------FTDSEKS-----GAARINEMFSIARRNAPAFVFV 268 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~--------~~~~~~~-----~~~~vr~lF~~Ak~~~P~ILfI 268 (686)
+-++++||||+|||+++..++.. .|.+++.+.... +....+. ......++++.+. ..+.+|+|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 35789999999999998666654 366655443220 0000000 0001223333332 24579999
Q ss_pred ccchhh
Q 005643 269 DEIDAI 274 (686)
Q Consensus 269 DEiDal 274 (686)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999987
No 139
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.21 E-value=0.00038 Score=77.09 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=38.8
Q ss_pred cCCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 164 SDTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 164 ~~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+..+.+|+++ .++.++.+..+..++... ...++|.|+||||||+++.+++..+
T Consensus 17 ~~~p~~~~~L--n~~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 17 RGSHMTFDDL--TEGQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----CCSSCC--CHHHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccC--CHHHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5667888887 455667777777776654 1279999999999999999998765
No 140
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.20 E-value=0.00027 Score=67.85 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=29.3
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
+.|.-|+|.|+||+|||++++.++..+|.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 456789999999999999999999999988765
No 141
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.17 E-value=0.0011 Score=68.03 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=30.2
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh--C-----------CCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES--G-----------LPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~--g-----------~~fi~is~s~ 239 (686)
|++...-++|+||||+|||+|++.++..+ | .++++++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 34556679999999999999999998643 2 4566777654
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.00021 Score=69.63 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=29.3
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
..+.|+|.||||+|||++++++|+.+|.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 456799999999999999999999999988744
No 143
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.12 E-value=0.00032 Score=72.98 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 178 DVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 178 e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
+....+.+++..+... ......|.-++|.||||+|||++|+.++.+.+..++++|+..+.
T Consensus 11 ~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 11 QFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred HHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 3444555555443222 12234577899999999999999999999886567778764443
No 144
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.04 E-value=0.0066 Score=68.71 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=52.1
Q ss_pred eEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC--CCccccccCCccceEEE
Q 005643 264 AFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDRRLY 341 (686)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRFd~~I~ 341 (686)
.+|+|||++.+.... ..+....+.++...- ..-+|.+|.+|.+|. .|+..++. -|...|.
T Consensus 345 ivvVIDE~~~L~~~~---~~~~~~~L~~Iar~G-------------Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~ 406 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---GKKVEELIARIAQKA-------------RAAGIHLILATQRPSVDVITGLIKA--NIPTRIA 406 (574)
T ss_dssp EEEEESCCTTHHHHT---CHHHHHHHHHHHHHC-------------TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEE
T ss_pred EEEEEeCHHHHhhhh---hHHHHHHHHHHHHHH-------------hhCCeEEEEEecCcccccccHHHHh--hhccEEE
Confidence 589999999886421 122333344443332 123589999999997 78888877 7888999
Q ss_pred eCCCCHHHHHHHHH
Q 005643 342 IGLPDAKQRVQIFD 355 (686)
Q Consensus 342 v~~Pd~~eR~~Il~ 355 (686)
+...+..+...||.
T Consensus 407 lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 407 FQVSSKIDSRTILD 420 (574)
T ss_dssp ECCSCHHHHHHHHS
T ss_pred EEcCCHHHHHHhcC
Confidence 99999888877763
No 145
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.03 E-value=0.0014 Score=72.50 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s 238 (686)
|..+..-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56667778999999999999999997643 6688888754
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.02 E-value=0.00031 Score=67.19 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
..|+|.|+||+|||++|+.+|..+|.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3489999999999999999999999987643
No 147
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.02 E-value=0.0004 Score=65.17 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=27.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
-|+|.||||+|||++++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876543
No 148
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.98 E-value=0.00035 Score=66.65 Aligned_cols=33 Identities=39% Similarity=0.788 Sum_probs=28.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.++.|+|+|+||+|||++++++|..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 356799999999999999999999999887643
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.98 E-value=0.00038 Score=66.81 Aligned_cols=40 Identities=35% Similarity=0.447 Sum_probs=32.5
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
++.+.-+.|.||||+||||+++.+++..+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4456678999999999999999999987777777765443
No 150
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.96 E-value=0.00049 Score=66.93 Aligned_cols=34 Identities=41% Similarity=0.560 Sum_probs=29.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
..|.-|+|.|+||+|||++|+.++..+|.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3456799999999999999999999999887654
No 151
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.95 E-value=0.011 Score=66.71 Aligned_cols=144 Identities=12% Similarity=0.109 Sum_probs=78.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHH----HhCCCe---EEEeCcccc--ch---h-------h------------h-HHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAK----ESGLPF---VFASGAEFT--DS---E-------K------------S-GAAR 250 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~----e~g~~f---i~is~s~~~--~~---~-------~------------~-~~~~ 250 (686)
..+.|.|+|++|+|||+||+.+++ .....| +.++.+... .. . + . ....
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 357789999999999999999997 232222 233433321 00 0 0 0 0111
Q ss_pred HHHHHHHHHhc-CCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccc
Q 005643 251 INEMFSIARRN-APAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLE 329 (686)
Q Consensus 251 vr~lF~~Ak~~-~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~a 329 (686)
+...+...-.. .+++|+||+++... +. .+... . +..||.||....... .
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~~-----------~~---~~~~~------~---------gs~ilvTTR~~~v~~-~ 280 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQEE-----------TI---RWAQE------L---------RLRCLVTTRDVEISN-A 280 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCHH-----------HH---HHHHH------T---------TCEEEEEESBGGGGG-G
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCch-----------hh---ccccc------C---------CCEEEEEcCCHHHHH-H
Confidence 22223333234 37999999998641 11 11111 1 136777776533221 1
Q ss_pred cccCCccceEEEeCCCCHHHHHHHHHHHhcCCCccccc--cHHHHHHhccCC
Q 005643 330 FVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDV--NFEELVFRTVGF 379 (686)
Q Consensus 330 LlrpgRFd~~I~v~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~La~~t~G~ 379 (686)
. +..+..+.++..+.++-.++|..+....+...+. ...+|++.+.|.
T Consensus 281 ~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 281 A---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp C---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred c---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 1 1133568999999999999998875433211111 235666666664
No 152
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.93 E-value=0.00049 Score=65.41 Aligned_cols=29 Identities=38% Similarity=0.581 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
.++|.||||+|||++++++|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
No 153
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.00045 Score=66.52 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=28.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH-hCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE-SGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e-~g~~fi~i 235 (686)
.+..|+|+|+||||||++++.+|.. +|.+++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3457999999999999999999998 68777643
No 154
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.91 E-value=0.00049 Score=64.86 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
-..|+|.|+||||||++++.+|..+|.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35799999999999999999999999998753
No 155
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.91 E-value=0.00053 Score=64.66 Aligned_cols=30 Identities=37% Similarity=0.698 Sum_probs=26.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
+..+.|.||||+|||++++.+|+.++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356999999999999999999999987655
No 156
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00047 Score=65.98 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
|.-|+|.|+||+|||++|+.++..+|.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 5679999999999999999999999987653
No 157
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.87 E-value=0.00055 Score=65.37 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=28.6
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.++-|+|.|+||+|||++++.++..+|.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 456799999999999999999999998766543
No 158
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.86 E-value=0.0018 Score=64.84 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=43.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc-------ccchhhhH-----HHHHHHHHHHHHh----cCCeE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE-------FTDSEKSG-----AARINEMFSIARR----NAPAF 265 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~-------~~~~~~~~-----~~~vr~lF~~Ak~----~~P~I 265 (686)
.-++++||||+|||+++..++..+ |..++.++... +.+..+.. .....++++.++. ..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 346778999999999988887654 66666664322 11111100 0112355665554 34789
Q ss_pred EEEccchhh
Q 005643 266 VFVDEIDAI 274 (686)
Q Consensus 266 LfIDEiDal 274 (686)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999976
No 159
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.82 E-value=0.00067 Score=69.07 Aligned_cols=32 Identities=38% Similarity=0.490 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeC
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASG 237 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~ 237 (686)
-++|.||||||||++|+++|+..+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999998876654
No 160
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.81 E-value=0.0022 Score=65.29 Aligned_cols=37 Identities=27% Similarity=0.535 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEF 240 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~ 240 (686)
+.-|+|.|+||+|||++|+.++.. .|.+++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 456899999999999999999987 7888886665544
No 161
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.81 E-value=0.00055 Score=64.70 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH-HhCCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAK-ESGLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~-e~g~~fi 233 (686)
|.-|+|.|+||+|||++|+.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 56789999999999999999998 4554433
No 162
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.81 E-value=0.00062 Score=65.41 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
+.-|+|.|+||+|||++++.+|..+|.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45799999999999999999999999876644
No 163
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.79 E-value=0.00076 Score=65.61 Aligned_cols=31 Identities=26% Similarity=0.580 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
++-|+|.|+||+||||+|+.+++.+|.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5679999999999999999999999877654
No 164
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.79 E-value=0.00063 Score=67.28 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
+..|+|.|+||+|||++++.+|..+|.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45689999999999999999999999877654
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.78 E-value=0.00056 Score=63.85 Aligned_cols=29 Identities=41% Similarity=0.750 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
-|+|.||||+|||++|+.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8888887653
No 166
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.77 E-value=0.01 Score=66.59 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=50.2
Q ss_pred Ce-EEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCC--CCccccccCCccceE
Q 005643 263 PA-FVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPD--ELDLEFVRPGRIDRR 339 (686)
Q Consensus 263 P~-ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRFd~~ 339 (686)
|. +|+|||+..+... ....+..++..+-.... ..++-+|.+|.+|. .++..++. -|...
T Consensus 297 P~ivlvIDE~~~ll~~-------~~~~~~~~l~~Lar~gR---------a~GI~LIlaTQrp~~dvl~~~i~~--n~~~R 358 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-------VGKKVEELIARLAQKAR---------AAGIHLVLATQRPSVDVITGLIKA--NIPTR 358 (512)
T ss_dssp CEEEEEEETHHHHHHH-------HHHHHHHHHHHHHHHCG---------GGTEEEEEEESCCCTTTSCHHHHH--HCCEE
T ss_pred CcEEEEEeCHHHHHhh-------hhHHHHHHHHHHHHHhh---------hCCcEEEEEecCCccccccHHHHh--hcCCe
Confidence 54 8999999887631 01122333333321111 12488889999987 68877776 78888
Q ss_pred EEeCCCCHHHHHHHHH
Q 005643 340 LYIGLPDAKQRVQIFD 355 (686)
Q Consensus 340 I~v~~Pd~~eR~~Il~ 355 (686)
|.+...+..+...|+.
T Consensus 359 I~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 359 IAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEECCSSHHHHHHHHS
T ss_pred EEEEcCCHHHHHHhcC
Confidence 9999999998888874
No 167
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.76 E-value=0.00061 Score=67.70 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=28.1
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
..+.-|+|.|+||+|||++++.+|..+|.+++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999998776643
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.76 E-value=0.0032 Score=69.37 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s 238 (686)
|..+..-++|.|+||+|||+||..+|... |.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56666778999999999999999987643 6788888764
No 169
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.00093 Score=65.96 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=28.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.+..|+|.|+||+||||+++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356799999999999999999999999876543
No 170
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.74 E-value=0.004 Score=65.40 Aligned_cols=39 Identities=31% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s 238 (686)
|..+..-++|.|+||+|||+||..+|..+ |.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 56666779999999999999999998654 5678887754
No 171
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.74 E-value=0.00083 Score=64.10 Aligned_cols=31 Identities=39% Similarity=0.578 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
+..|+|.|+||+||||+++.+|+.+|.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3468999999999999999999999876653
No 172
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.73 E-value=0.00092 Score=66.75 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=30.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
+.|+-|+|.||||+||+|.|+.||..+|.+.+ |..++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 45778999999999999999999999987654 444443
No 173
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.73 E-value=0.00071 Score=64.33 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
+.-|+|.|+||+|||++|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457899999999999999999999999877
No 174
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.73 E-value=0.00068 Score=63.83 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
+.|+|.|+||+|||++|+.+|..+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988764
No 175
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.72 E-value=0.00073 Score=65.07 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=27.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
.+.-|+|.|+||+|||++|+.++..+|.+++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 35679999999999999999999999866654
No 176
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.72 E-value=0.013 Score=64.57 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=49.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccch---------------------hhhHHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS---------------------EKSGAARINEMFSIA 258 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~---------------------~~~~~~~vr~lF~~A 258 (686)
.|.-+++.|++|+||||++..+|..+ |..+..+++..+... .......++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999998754 667777776543210 011233456677788
Q ss_pred HhcCCeEEEEccch
Q 005643 259 RRNAPAFVFVDEID 272 (686)
Q Consensus 259 k~~~P~ILfIDEiD 272 (686)
+...+.+++||..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77778899999763
No 177
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.70 E-value=0.00078 Score=66.16 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.|+|.||||+|||++|+.+|.++|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998877654
No 178
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.69 E-value=0.00084 Score=67.83 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=28.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.|.-|+|.||||+||||+|+.++..+|.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 567899999999999999999999998776643
No 179
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.67 E-value=0.0015 Score=62.19 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=31.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s 238 (686)
.+.-+.|.|++|+|||++++.++..+ |.+++.+++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 45678899999999999999999987 9999887643
No 180
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.67 E-value=0.00087 Score=65.77 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.|+|.||||+||||+|+.++.++|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887644
No 181
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.67 E-value=0.0007 Score=64.61 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
+.-|+|.|+||+||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999887
No 182
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.66 E-value=0.00092 Score=64.90 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=28.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.++-|+|.|+||+|||++++.++..+|.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 456789999999999999999999998766654
No 183
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.64 E-value=0.00068 Score=67.08 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=27.7
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
.+..|+|.||||+|||++++.+|..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999999976543
No 184
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.64 E-value=0.00098 Score=62.49 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
.|+|.|+||+|||++++.++..+|.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999988764
No 185
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.60 E-value=0.0014 Score=65.46 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
+..|+|.|+||+|||++|+.+|..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999776543
No 186
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.59 E-value=0.011 Score=57.98 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=66.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc---------ccchhh------------------hHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE---------FTDSEK------------------SGAARINEMF 255 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~---------~~~~~~------------------~~~~~vr~lF 255 (686)
.|++|+++|.|||++|-++|-.+ |..+..+.... +..... .........+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 58899999999999999996654 78877774322 111110 0123345555
Q ss_pred HHHHh----cCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEecCCCCCCccccc
Q 005643 256 SIARR----NAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICATNRPDELDLEFV 331 (686)
Q Consensus 256 ~~Ak~----~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaaTN~p~~LD~aLl 331 (686)
..+++ ....+|+|||+-....-+-- ....++..+..... ..-||.|+|.+ +++|+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~~~ev~~~l~~Rp~-----------~~~vIlTGr~a---p~~l~ 168 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-------PLEEVISALNARPG-----------HQTVIITGRGC---HRDIL 168 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-------CHHHHHHHHHTSCT-----------TCEEEEECSSC---CHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-------CHHHHHHHHHhCcC-----------CCEEEEECCCC---cHHHH
Confidence 55554 44789999999654221100 12345555544322 24678888764 45555
Q ss_pred cCCccceEEEe
Q 005643 332 RPGRIDRRLYI 342 (686)
Q Consensus 332 rpgRFd~~I~v 342 (686)
. .-|.+-++
T Consensus 169 e--~AD~VTem 177 (196)
T 1g5t_A 169 D--LADTVSEL 177 (196)
T ss_dssp H--HCSEEEEC
T ss_pred H--hCcceeee
Confidence 4 55555544
No 187
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.57 E-value=0.003 Score=63.48 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s 238 (686)
.++++||+|+|||.++.+++...+.+++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998888777777654
No 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.56 E-value=0.0016 Score=61.57 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
...++|.||||+|||++++.+++.+|.+++ ++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 456899999999999999999998876554 44444
No 189
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.51 E-value=0.0017 Score=63.10 Aligned_cols=36 Identities=42% Similarity=0.639 Sum_probs=29.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
.+.-+.|.||+|+|||++++.+++.+|..+ +++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 456799999999999999999999987544 454444
No 190
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.50 E-value=0.0061 Score=76.96 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=68.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH---HhCCCeEEEeCccccch-----------------hhhHHHHHHHHHHHHHhcCC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAK---ESGLPFVFASGAEFTDS-----------------EKSGAARINEMFSIARRNAP 263 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~---e~g~~fi~is~s~~~~~-----------------~~~~~~~vr~lF~~Ak~~~P 263 (686)
.+.|++|||+|||||+||-.++. ..|-...+++...-... ...++..+..+...++..+|
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~ 1510 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1510 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCC
Confidence 34499999999999999887754 44778888886542211 22345667778888899999
Q ss_pred eEEEEccchhhhccCCCCC-------hhHHHHHHHHHHHhcCCcccC
Q 005643 264 AFVFVDEIDAIAGRHARKD-------PRRRATFEALIAQLDGDKERT 303 (686)
Q Consensus 264 ~ILfIDEiDal~~~~~~~~-------~e~~~~l~~LL~~ld~~~~~~ 303 (686)
++|+||-+.++.++..-.. .-..+.+++.|..|.+....+
T Consensus 1511 ~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~ 1557 (1706)
T 3cmw_A 1511 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 1557 (1706)
T ss_dssp SEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999987642110 113455666677776654433
No 191
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.46 E-value=0.0017 Score=68.66 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=32.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
.++.++|+||+|+|||++++.+|+.++.+++.++...+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 35679999999999999999999999988888765543
No 192
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.42 E-value=0.0015 Score=64.21 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.|+|.|+||+||||+|+.++..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 388999999999999999999998877654
No 193
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.41 E-value=0.0018 Score=63.93 Aligned_cols=34 Identities=38% Similarity=0.636 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.|+|.||||+||+|.|+.||+.+|.+.+ |..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3789999999999999999999987754 444443
No 194
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.41 E-value=0.001 Score=64.93 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (686)
-+.|.||+|+|||++++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999875
No 195
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.39 E-value=0.0026 Score=60.76 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~---g~~fi~is 236 (686)
-|.|.|+||+|||++++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 89888765
No 196
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.38 E-value=0.012 Score=61.59 Aligned_cols=72 Identities=25% Similarity=0.235 Sum_probs=46.0
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchh---------------------hhHHHHHHHHHH
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE---------------------KSGAARINEMFS 256 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~---------------------~~~~~~vr~lF~ 256 (686)
...++-+++.||+|+|||+++..+|..+ +..+..+++..+.... +.........+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3457789999999999999999998754 5556655544322110 000111223445
Q ss_pred HHHhcCCeEEEEccch
Q 005643 257 IARRNAPAFVFVDEID 272 (686)
Q Consensus 257 ~Ak~~~P~ILfIDEiD 272 (686)
.+....|.+|+||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566778899999764
No 197
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.37 E-value=0.021 Score=62.62 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=46.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchh---------------------hhHHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSE---------------------KSGAARINEMFSIA 258 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~---------------------~~~~~~vr~lF~~A 258 (686)
.|.-+++.||+|+||||++..+|..+ |..+..+++..+.... .............+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 47788999999999999999998654 6666666654322110 01112234455666
Q ss_pred HhcCCeEEEEccch
Q 005643 259 RRNAPAFVFVDEID 272 (686)
Q Consensus 259 k~~~P~ILfIDEiD 272 (686)
+...+.+|+||...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 66678899999774
No 198
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.32 E-value=0.0022 Score=73.13 Aligned_cols=32 Identities=38% Similarity=0.570 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEe
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE---SGLPFVFAS 236 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is 236 (686)
+.+++.||||||||+++++++.. .+.+++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 57899999999999999999764 466666554
No 199
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.29 E-value=0.0024 Score=62.05 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=27.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.+.-|+|.|+||+|||++++.++..++.+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 356799999999999999999999876654433
No 200
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.28 E-value=0.0025 Score=62.00 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=25.6
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
.+.-|+|.|+||+|||++++.++..++.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3567999999999999999999998654433
No 201
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.26 E-value=0.0028 Score=62.42 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
..+.|.||||+||||+++.+++.+|.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999977653
No 202
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.24 E-value=0.0028 Score=61.25 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCCeEEEe
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES-GLPFVFAS 236 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~-g~~fi~is 236 (686)
+.-|.|.|+||+||||+++.++..+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57777664
No 203
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.23 E-value=0.0031 Score=61.30 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=28.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s 238 (686)
.+.-+.|.||+|+|||++++++|+.+ |...+++++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 45678899999999999999999987 5544455543
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.22 E-value=0.0043 Score=66.51 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=42.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeC-cccc--------ch--hhhHHHHHHHHHHHHHhcCCeEEEEc
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES----GLPFVFASG-AEFT--------DS--EKSGAARINEMFSIARRNAPAFVFVD 269 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~-s~~~--------~~--~~~~~~~vr~lF~~Ak~~~P~ILfID 269 (686)
..+++.||+|+||||+.+++++.. +..++.+.- .++. .. .+.....+...+..|-...|.||++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 358899999999999999998865 233332211 1110 00 11111124456777778899999999
Q ss_pred cch
Q 005643 270 EID 272 (686)
Q Consensus 270 EiD 272 (686)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 205
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.22 E-value=0.0019 Score=62.62 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
-|.|.|++|+|||++++.+|+ .|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 887776543
No 206
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.20 E-value=0.0027 Score=61.13 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
-|.|.|+||+||||+++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987653
No 207
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.18 E-value=0.012 Score=65.03 Aligned_cols=40 Identities=30% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~ 239 (686)
|..+..-++|.|+||+|||+||-.+|..+ |.++++++...
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 56666779999999999999999887654 77888887643
No 208
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.18 E-value=0.0029 Score=62.80 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
-|+|.|+||+||||+++.++..+|.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999876543
No 209
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.17 E-value=0.0018 Score=61.64 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=25.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESG---LPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g---~~fi~is 236 (686)
-|+|.|+||+||||+++.++..++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 588999999999999999999775 3355554
No 210
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.14 E-value=0.034 Score=62.43 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccch-----------------------------hhhH
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDS-----------------------------EKSG 247 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~-----------------------------~~~~ 247 (686)
++.....++|.||||+|||+|++.++... |.++++++..+-... ...+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45566678999999999999999998753 455666654331100 0023
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhc
Q 005643 248 AARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLD 297 (686)
Q Consensus 248 ~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld 297 (686)
....+.+...+....|.+|+||=+..+-.. ..+......+..++..+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG--VSNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh--CChHHHHHHHHHHHHHHH
Confidence 345666777777788999999966665322 111123444555666554
No 211
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.13 E-value=0.0041 Score=59.61 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCeEEEe
Q 005643 207 VLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~---g~~fi~is 236 (686)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99987654
No 212
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.12 E-value=0.0043 Score=60.01 Aligned_cols=30 Identities=33% Similarity=0.629 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.|.|.|++|+|||++++.+|+.+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999887743
No 213
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.11 E-value=0.006 Score=65.72 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=44.7
Q ss_pred hCCccCceEEEEcCCCCcHHHHHHHHHHHhC----CCeEEEeCc-cc--------cch--hhhHHHHHHHHHHHHHhcCC
Q 005643 199 RGVQFVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGA-EF--------TDS--EKSGAARINEMFSIARRNAP 263 (686)
Q Consensus 199 ~g~~~p~gvLL~GPPGTGKT~LAralA~e~g----~~fi~is~s-~~--------~~~--~~~~~~~vr~lF~~Ak~~~P 263 (686)
+..++...++|.||+|+||||+++++++... ..++.+... ++ ... .+.....+...+..+-...|
T Consensus 131 l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 131 LCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp HTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 3344556689999999999999999988542 223222211 00 000 00011123455566666789
Q ss_pred eEEEEccch
Q 005643 264 AFVFVDEID 272 (686)
Q Consensus 264 ~ILfIDEiD 272 (686)
.+|++||+-
T Consensus 211 d~illdE~~ 219 (372)
T 2ewv_A 211 DVIFVGEMR 219 (372)
T ss_dssp SEEEESCCC
T ss_pred CEEEECCCC
Confidence 999999983
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.10 E-value=0.004 Score=62.55 Aligned_cols=30 Identities=30% Similarity=0.637 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
|.-+.|.||||+||||+++.++..+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 567999999999999999999999987654
No 215
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.09 E-value=0.012 Score=65.71 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=32.3
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCcc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~ 239 (686)
|..+..-++|.|+||+|||+||..+|..+ |.++++++...
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 56666778999999999999999997754 56888888653
No 216
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.09 E-value=0.003 Score=60.84 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=26.7
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
.+..|.|.|++|+|||++++.+|+. |.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 3567899999999999999999998 877664
No 217
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.08 E-value=0.0085 Score=56.87 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=18.6
Q ss_pred ccCceEEEEcCCCCcHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFART 223 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAra 223 (686)
+.+.-+.|.||+|+|||||+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3455688999999999999994
No 218
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.07 E-value=0.0046 Score=62.49 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCe--------EEEeCccccc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPF--------VFASGAEFTD 242 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~f--------i~is~s~~~~ 242 (686)
.+.-|.|.|+||+|||++|+.++..+|.++ ..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 456799999999999999999999999874 3567666654
No 219
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.04 E-value=0.0062 Score=62.31 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=42.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC----CCeEEEeCccc----------cch--hhhHHHHHHHHHHHHHhcCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGAEF----------TDS--EKSGAARINEMFSIARRNAPAFV 266 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g----~~fi~is~s~~----------~~~--~~~~~~~vr~lF~~Ak~~~P~IL 266 (686)
+..-++|.||+|+||||+++++++... ..++ +....+ ... .+.....++..+..+-...|.+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 345688999999999999999988542 2222 111110 000 01011224556666666789999
Q ss_pred EEccch
Q 005643 267 FVDEID 272 (686)
Q Consensus 267 fIDEiD 272 (686)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 220
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.01 E-value=0.038 Score=62.07 Aligned_cols=112 Identities=23% Similarity=0.237 Sum_probs=64.5
Q ss_pred CccCceEEEEcCCCCcHHHHHHH--HHHHh--CCCeEEEeCccccch-------hh------------------------
Q 005643 201 VQFVRGVLLSGPPGTGKTLFART--LAKES--GLPFVFASGAEFTDS-------EK------------------------ 245 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAra--lA~e~--g~~fi~is~s~~~~~-------~~------------------------ 245 (686)
++....++|.||+|+|||+|++. +++-. +...+++++.+.... .+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 45667799999999999999999 44432 455666665442100 00
Q ss_pred ------hHHHHHHHHHHHHHhcCCeEEEEccchhhhccCCCCChhHHHHHHHHHHHhcCCcccCCcccccccccEEEEEe
Q 005643 246 ------SGAARINEMFSIARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGIDRFSLRQAVIFICA 319 (686)
Q Consensus 246 ------~~~~~vr~lF~~Ak~~~P~ILfIDEiDal~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~~~~~~~~~~ViVIaa 319 (686)
.................|.+|+|||.-++... .+.+......+..++..+... ++.+|.+
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-~~lD~~~~~~l~~ll~~l~~~-------------g~tvl~i 181 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-YDASSVVRRELFRLVARLKQI-------------GATTVMT 181 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-TCCHHHHHHHHHHHHHHHHHH-------------TCEEEEE
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-cCCHHHHHHHHHHHHHHHHHC-------------CCEEEEE
Confidence 00112233334444566889999999876432 111233444556666666431 2456667
Q ss_pred cCCCCCC
Q 005643 320 TNRPDEL 326 (686)
Q Consensus 320 TN~p~~L 326 (686)
|.+.+.+
T Consensus 182 tH~~~~~ 188 (525)
T 1tf7_A 182 TERIEEY 188 (525)
T ss_dssp EECSSSS
T ss_pred ecCCCCc
Confidence 7766654
No 221
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.00 E-value=0.0038 Score=60.66 Aligned_cols=29 Identities=38% Similarity=0.461 Sum_probs=25.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
..+.|.||+|+||||+++.+|+ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3578999999999999999998 8887763
No 222
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.97 E-value=0.0046 Score=62.32 Aligned_cols=30 Identities=37% Similarity=0.601 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
|..+.|.||||+|||++++.+|+.+|.+++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 567999999999999999999999987764
No 223
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.97 E-value=0.0065 Score=58.76 Aligned_cols=28 Identities=25% Similarity=0.168 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLP 231 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (686)
+.-|+|.|+||+|||++++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999999999999988764
No 224
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.88 E-value=0.0037 Score=66.82 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
..++|.||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999988865
No 225
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.86 E-value=0.0039 Score=60.84 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
.-|.|+|++|||||++++.++..+|++++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 4578999999999999999999889887643
No 226
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.85 E-value=0.0044 Score=63.09 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
...|.|.|++|+|||++++.+|+.+|.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45799999999999999999999999887753
No 227
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.82 E-value=0.0053 Score=64.45 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=32.7
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcccc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFT 241 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~~ 241 (686)
.|+-++|.||+|+|||+||..+|...+.++++.+.-.+-
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 466789999999999999999999998887777655543
No 228
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.77 E-value=0.0074 Score=59.03 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 181 DLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 181 ~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
+.+.++++.+... .+.+.-+.|.||+|+|||||++.+++.+.
T Consensus 6 ~~~~~~~~~~~~~-------~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPR-------QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTT-------CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455666655432 23456688999999999999999998764
No 229
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.76 E-value=0.0036 Score=64.64 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES-GLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~-g~~fi 233 (686)
|.-|+|.|+||+|||++|+.++... +.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4578999999999999999999864 55444
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.70 E-value=0.0049 Score=65.46 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
++-|+|.||+|+|||+|+..+|+.++.+++..+.-.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 4578999999999999999999999988877665543
No 231
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.67 E-value=0.0044 Score=65.69 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=47.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC--CCeEEEeCcc-c-----cchhh-h--HHHHHHHHHHHHHhcCCeEEEEccc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAE-F-----TDSEK-S--GAARINEMFSIARRNAPAFVFVDEI 271 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g--~~fi~is~s~-~-----~~~~~-~--~~~~vr~lF~~Ak~~~P~ILfIDEi 271 (686)
....++|.||+|+|||||++++++... ...+.+.... + ....+ . +..+.+..+..|-...|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 456799999999999999999998753 2344444322 1 11100 0 2334566777777888999999997
Q ss_pred hh
Q 005643 272 DA 273 (686)
Q Consensus 272 Da 273 (686)
-.
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 53
No 232
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.65 E-value=0.0082 Score=57.36 Aligned_cols=34 Identities=35% Similarity=0.346 Sum_probs=27.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEe
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is 236 (686)
.+.-++|.|+||+|||++++.+|..+ |.++..++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 45678999999999999999999876 44455554
No 233
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.64 E-value=0.046 Score=58.04 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=31.7
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGA 238 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s 238 (686)
|..+..-++|.|+||+|||+||..+|.. .|.++.++|..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4566667999999999999999999775 47788877754
No 234
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.62 E-value=0.02 Score=55.59 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=29.5
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~ 239 (686)
..+.-+.|.||+|+|||++++.+++.+ +.+++..+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 345668899999999999999999865 66666654443
No 235
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.61 E-value=0.0047 Score=60.17 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=25.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh-CCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES-GLPFVF 234 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~-g~~fi~ 234 (686)
.+.-+.|.|+||+|||++++.+++.+ +++++.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 34567899999999999999999876 555443
No 236
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.60 E-value=0.0078 Score=59.05 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
+.-|.|.|++|+|||++++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45689999999999999999998 88776643
No 237
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.57 E-value=0.009 Score=59.62 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=28.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
..+..|.|.|++|+|||++++.+|+.+|.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 345568999999999999999999999987653
No 238
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.56 E-value=0.0079 Score=58.90 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
|..+.|.|++|+|||++++.++..+|.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3468999999999999999999999987764
No 239
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.56 E-value=0.0068 Score=59.38 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=29.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCcc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAE 239 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~ 239 (686)
.+.-++|.|+||+|||++++.+++.+ |.+++.+++..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45678999999999999999999865 56777776543
No 240
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.54 E-value=0.048 Score=56.72 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=30.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCccc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEF 240 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~~ 240 (686)
.+..++|.||+|+|||+++..+|..+ |..+..+++..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 46789999999999999999998643 667777766543
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.49 E-value=0.061 Score=59.02 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=47.7
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCccccchhh---------------------hHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGAEFTDSEK---------------------SGAARINEMFS 256 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s~~~~~~~---------------------~~~~~vr~lF~ 256 (686)
..|+.+++.|++|+|||+++-.+|..+ |..+..+++..+..... .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457889999999999999999887643 77888888765432110 01222355666
Q ss_pred HHHhcCCeEEEEccc
Q 005643 257 IARRNAPAFVFVDEI 271 (686)
Q Consensus 257 ~Ak~~~P~ILfIDEi 271 (686)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666555679999853
No 242
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.48 E-value=0.01 Score=64.81 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=27.3
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
.|.-|+|+|+||+|||++|+.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 46778999999999999999999988765543
No 243
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.48 E-value=0.0067 Score=59.45 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
.+.-+.|.||+|+|||++++.+++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 355688999999999999999998764
No 244
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.48 E-value=0.0067 Score=62.64 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
|.-|.|.|+||+|||++|+.++ ++|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 5678999999999999999999 678776543
No 245
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.43 E-value=0.0099 Score=60.20 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
...|.|.||+|+|||++++.+|+.+|.+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 346889999999999999999999998765
No 246
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.38 E-value=0.0086 Score=58.31 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=24.6
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
..++-++|.||||+|||++++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3566799999999999999999999874
No 247
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.34 E-value=0.055 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
+.+++.+|+|+|||+++-..+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999988777654
No 248
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.27 E-value=0.046 Score=61.13 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=28.7
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s 238 (686)
..++.|++.|+||+|||+++..+|..+ |..+..+++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 457789999999999999999998654 6677766663
No 249
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.26 E-value=0.01 Score=63.17 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASG 237 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~ 237 (686)
+-|+|.||+|+|||++|+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 568999999999999999999999866655543
No 250
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.26 E-value=0.011 Score=56.44 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
.+-+.|.||+|+|||+|++.+++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998753
No 251
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.25 E-value=0.026 Score=64.66 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
+.+++.||||||||+++.++...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 46999999999999998887544
No 252
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.19 E-value=0.0099 Score=62.50 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCccc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEF 240 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s~~ 240 (686)
++-++|.||+|+|||+||..+|...+..+++.+.-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 3468899999999999999999998877666554433
No 253
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.17 E-value=0.012 Score=56.85 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.+.-+.|.||+|+|||++++.+++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999875
No 254
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.10 E-value=0.022 Score=55.70 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=43.2
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHH--HhCCCeEEEeCc---cccchhh--hHH-------HHHHHHHHHHHhcCCeEEEE
Q 005643 204 VRGVLLSGPPGTGKT-LFARTLAK--ESGLPFVFASGA---EFTDSEK--SGA-------ARINEMFSIARRNAPAFVFV 268 (686)
Q Consensus 204 p~gvLL~GPPGTGKT-~LAralA~--e~g~~fi~is~s---~~~~~~~--~~~-------~~vr~lF~~Ak~~~P~ILfI 268 (686)
.+=.++|||.|+||| .|.+++.+ +.+..++.++.. .+..... .+. ....++++..+ ...+|+|
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlI 97 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGI 97 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEE
Confidence 455788999999999 88998855 457788887744 2221110 000 11223343333 3469999
Q ss_pred ccchhh
Q 005643 269 DEIDAI 274 (686)
Q Consensus 269 DEiDal 274 (686)
||++-+
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999988
No 255
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.03 E-value=0.015 Score=57.02 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
.-|.|.|++|||||++++.+|+.+|.+|+-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999883
No 256
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.02 E-value=0.082 Score=55.63 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=29.8
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s 238 (686)
...++.+++.||+|+|||+++..+|..+ |..+..+++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3567789999999999999999998754 5566666543
No 257
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.01 E-value=0.0088 Score=58.82 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
.++++|.||+|+|||++|..++...+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 57899999999999999999998765 555443
No 258
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.01 E-value=0.015 Score=55.66 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
.-+.|.||+|+||||+++.+++..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3578999999999999999998553
No 259
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.97 E-value=0.013 Score=57.00 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=25.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC--CCeE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG--LPFV 233 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g--~~fi 233 (686)
.+.-+.|.||+|+||||+++.+++..+ +.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 445688999999999999999999877 4444
No 260
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.96 E-value=0.07 Score=51.22 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=15.1
Q ss_pred ceEEEEcCCCCcHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFA 221 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LA 221 (686)
+.+++.+|+|+|||+.+
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 57999999999999863
No 261
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.93 E-value=0.021 Score=54.94 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s 238 (686)
+.-+.|.||+|+||||+++.+++.. |-+.++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~--~~~~~~~~ 39 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL--AEIKISIS 39 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS--SSEEECCC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC--CCeEEece
Confidence 4458899999999999999999875 34444443
No 262
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.93 E-value=0.087 Score=54.79 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~ 239 (686)
+.-+++.|++|+|||+++..+|..+ |..+..+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 6778899999999999999998765 66777666553
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.82 E-value=0.027 Score=58.01 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=30.5
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCc
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s 238 (686)
|++...-++|.||||+|||+|++.+|... |.++++++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 45566778999999999999999998754 4566666643
No 264
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.78 E-value=0.016 Score=62.96 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGA 238 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~is~s 238 (686)
++-|+|.||+|+|||+||..+|..++..+++.+.-
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~ 36 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM 36 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCcc
Confidence 45678999999999999999999998777665543
No 265
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.71 E-value=0.12 Score=55.02 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=26.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEe
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is 236 (686)
.+.-|.|.|+||+|||+++.+++..+ |..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34568999999999999999998764 55544443
No 266
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.69 E-value=0.1 Score=58.15 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=24.1
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...+.-+.|.||+|+||||+++.||+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4456778999999999999999999864
No 267
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.57 E-value=0.072 Score=55.73 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=23.4
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
++...-+.|.||+|+|||||++.+++..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3455668999999999999999998743
No 268
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.56 E-value=0.024 Score=55.00 Aligned_cols=26 Identities=38% Similarity=0.612 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGL 230 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~ 230 (686)
|-|+|+||+|+|||+|++.+..+..-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45899999999999999999887643
No 269
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.55 E-value=0.028 Score=64.47 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=32.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~ 239 (686)
.+.-|+|.|+||+|||++|++++..+ |.+++.+++..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 45679999999999999999999998 99999886433
No 270
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.53 E-value=0.021 Score=55.15 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCeEEEeCcc
Q 005643 207 VLLSGPPGTGKTLFARTLAKESGLPFVFASGAE 239 (686)
Q Consensus 207 vLL~GPPGTGKT~LAralA~e~g~~fi~is~s~ 239 (686)
+|++|++|+|||++|..+|.. +.|.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88988888755
No 271
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.51 E-value=0.019 Score=54.96 Aligned_cols=24 Identities=42% Similarity=0.740 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+-+.|.||+|+||||+++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999875
No 272
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=94.42 E-value=0.046 Score=47.52 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=42.8
Q ss_pred CCccchHHHH-HHhccCCccEEEEEcCeeEEEEEEecCce----eEEEEeCCCChhHHHHHHh
Q 005643 35 RPKLPYTYFL-EKLDSSEVAAVVFTEDLKRLYVTMKEGFP----LEYVVDIPLDPYLFETIAS 92 (686)
Q Consensus 35 ~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~ 92 (686)
..+|||++|. ++|++|.|++|++... ..+.+.++.+.. ..|.+.++.-+.|.+.|.+
T Consensus 15 ~~eIs~~eF~~~~L~kG~V~kI~V~nk-~~v~V~l~~~a~~~~~~~~~f~IGSvd~FE~~Le~ 76 (99)
T 2lna_A 15 GREITWKDFVNNYLSKGVVDRLEVVNK-RFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLET 76 (99)
T ss_dssp SEECCHHHHHHHTGGGTCEEEEEEETT-TEEEEEECTTTSCSTTCCEEEECSCHHHHHHHHHH
T ss_pred CcccCHHHHHHHHhhCCCceEEEEEcC-CEEEEEEcCCCcCCCCceEEEEeCCHHHHHHHHHH
Confidence 4579999999 7999999999988744 456777776541 2367888876777776654
No 273
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.41 E-value=0.015 Score=65.25 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=44.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC--CCeEEEeCcc-ccch------------hhhHHHHHHHHHHHHHhcCCeEEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAE-FTDS------------EKSGAARINEMFSIARRNAPAFVF 267 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g--~~fi~is~s~-~~~~------------~~~~~~~vr~lF~~Ak~~~P~ILf 267 (686)
...++++.||+|+||||+++++++... ...+.+.... +.-. .+.+.-.+.++...+-...|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 345799999999999999999988763 2345544332 1100 000011234455556667899999
Q ss_pred Eccch
Q 005643 268 VDEID 272 (686)
Q Consensus 268 IDEiD 272 (686)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99973
No 274
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.29 E-value=0.027 Score=56.57 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
-+-|.||||+|||++|+.++..+|++.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 46789999999999999999999988764
No 275
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.08 E-value=0.046 Score=56.73 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
..|.-|.|.||+|+|||++++.+++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567788999999999999999988765
No 276
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.06 E-value=0.027 Score=54.73 Aligned_cols=26 Identities=42% Similarity=0.707 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
++-+.|.||+|+|||+|++.+++...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998753
No 277
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.01 E-value=0.084 Score=60.78 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGA 238 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s 238 (686)
-.|++||||||||+++-.+... .+.+++.++.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 4689999999999765444332 25566555543
No 278
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.00 E-value=0.028 Score=56.38 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.6
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP 231 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (686)
.+.-+-|.||+|+||||+++.+++.+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34457899999999999999999988754
No 279
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.99 E-value=0.23 Score=47.55 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFAR 222 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (686)
+.+++.+|+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999997544
No 280
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.99 E-value=0.23 Score=52.44 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=23.9
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..|.-+.|.||+|+||||+++.+|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999864
No 281
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.99 E-value=0.13 Score=53.30 Aligned_cols=70 Identities=23% Similarity=0.165 Sum_probs=44.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCccccchhh---------------------hHHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAEFTDSEK---------------------SGAARINEMFSIA 258 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~~~~~~~---------------------~~~~~vr~lF~~A 258 (686)
.++.+.+.|++|+|||+++..+|..+ +..+..+++.-...... ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 46678889999999999999998754 55665555432111000 0011234556666
Q ss_pred HhcCCeEEEEccch
Q 005643 259 RRNAPAFVFVDEID 272 (686)
Q Consensus 259 k~~~P~ILfIDEiD 272 (686)
+...+.+|+||+--
T Consensus 177 ~~~~~D~viiDtpp 190 (295)
T 1ls1_A 177 RLEARDLILVDTAG 190 (295)
T ss_dssp HHHTCCEEEEECCC
T ss_pred HhCCCCEEEEeCCC
Confidence 55567899999863
No 282
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.91 E-value=0.17 Score=49.81 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=30.6
Q ss_pred cccccceecCcccHHHHHHHHHHhCCchhhhhhCC---ccCceEEEEcCCCCcHHHHH
Q 005643 167 KSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGV---QFVRGVLLSGPPGTGKTLFA 221 (686)
Q Consensus 167 ~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~---~~p~gvLL~GPPGTGKT~LA 221 (686)
..+|+++-..+.+.+.|.+. .+..|..++...+ ...+.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 45688875445444444331 1233333333211 12467999999999999853
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.90 E-value=0.042 Score=51.71 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+...-+.|.||.|+|||+|+|++++..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344568899999999999999999986
No 284
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.85 E-value=0.27 Score=50.97 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEEeC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES-----GLPFVFASG 237 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~-----g~~fi~is~ 237 (686)
+.+++.+|+|+|||+.+-..+-+. +...+.+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 689999999999998765554433 444555443
No 285
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.82 E-value=0.034 Score=55.46 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVF 234 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~ 234 (686)
.-|.+.|++|||||++++.+|..+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999999864
No 286
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.80 E-value=0.17 Score=57.40 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=23.2
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+++..-+.|.||+|+|||||++.+++..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3445668899999999999999998754
No 287
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.79 E-value=0.21 Score=62.33 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=24.3
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
+++..-+.|+||+|+|||++++.+.+...
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 44556689999999999999999988653
No 288
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.76 E-value=0.2 Score=57.12 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=23.3
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+++..-+.|.||+|+|||+|++.+++..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3445668999999999999999998754
No 289
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.75 E-value=0.063 Score=56.00 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.3
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556778999999999999999999865
No 290
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.73 E-value=0.2 Score=59.95 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.3
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~ 226 (686)
....-++|.||.|+|||++.|.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3456789999999999999999874
No 291
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.71 E-value=0.018 Score=55.88 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g 229 (686)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999874
No 292
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.68 E-value=0.039 Score=53.78 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.3
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
...-+.|.||+|+|||+|++++++...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999999863
No 293
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.67 E-value=0.041 Score=53.93 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
.++-+.|.||+|+|||+|++++++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356688999999999999999998764
No 294
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.63 E-value=0.19 Score=60.74 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=29.9
Q ss_pred ecCcccHHHHHHHHHHhCCchhhhhhCCccCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 174 VLGGDVWDLLDELMIYMGNPMQYYERGVQFVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 174 vG~~e~k~~L~elv~~l~~p~~~~~~g~~~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
+|.++..+.|.+.+. .. ...+-+.|+||+|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~---~~--------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALL---EL--------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHH---HC--------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh---cc--------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 677655455444432 21 12467899999999999999999853
No 295
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.62 E-value=0.022 Score=56.48 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=16.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHH-HHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLA-KES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA-~e~ 228 (686)
...-+.|.||+|+|||++++.++ +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34568899999999999999999 765
No 296
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.60 E-value=0.043 Score=61.70 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=24.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLP 231 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (686)
.+.-|+|.|.||+|||++|+.+|..++..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 35678999999999999999999988543
No 297
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.58 E-value=0.038 Score=59.10 Aligned_cols=71 Identities=20% Similarity=0.340 Sum_probs=45.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhC--CCeEEEeCc-ccc-----ch---h-----hh---HHHHHHHHHHHHHhcC
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGA-EFT-----DS---E-----KS---GAARINEMFSIARRNA 262 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g--~~fi~is~s-~~~-----~~---~-----~~---~~~~vr~lF~~Ak~~~ 262 (686)
+....++|.||+|+||||+++++++... ...+.+... ++. .. . .. ....++..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 3456799999999999999999998653 233444321 110 00 0 00 1123566677777778
Q ss_pred CeEEEEccch
Q 005643 263 PAFVFVDEID 272 (686)
Q Consensus 263 P~ILfIDEiD 272 (686)
|.+++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 9999999875
No 298
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.56 E-value=0.038 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||+|+|||+|++.+++..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999976
No 299
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.55 E-value=0.28 Score=53.59 Aligned_cols=36 Identities=28% Similarity=0.181 Sum_probs=28.7
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGA 238 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s 238 (686)
.+..+++.|++|+|||+++..+|..+ |..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 56778899999999999999998764 5566666653
No 300
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.53 E-value=0.031 Score=57.98 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CCeEEEeCcccc
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESG---LPFVFASGAEFT 241 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g---~~fi~is~s~~~ 241 (686)
+.-|.|.||+|+||||+|+.++..++ ..+..++..++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 34588999999999999999998765 455666766665
No 301
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.51 E-value=0.039 Score=53.73 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=41.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc--------ccchhhh-----HHHHHHHHHHHHHhcCCeEEEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE--------FTDSEKS-----GAARINEMFSIARRNAPAFVFV 268 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~--------~~~~~~~-----~~~~vr~lF~~Ak~~~P~ILfI 268 (686)
+-.+++||+|+|||+.+-.++..+ |..++.+.... +.+..+. ......++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 457889999999999888887654 66666553211 1110000 00112345555442 3579999
Q ss_pred ccchhh
Q 005643 269 DEIDAI 274 (686)
Q Consensus 269 DEiDal 274 (686)
||++.+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999987
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.49 E-value=0.045 Score=57.31 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=25.4
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.+++...+.|+||+|+|||+|++.|++..
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45566779999999999999999999976
No 303
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.45 E-value=0.14 Score=50.17 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=31.5
Q ss_pred cCCcccccceecC-cccHHHHHHHHHHhCCchhhhhhCC---ccCceEEEEcCCCCcHHHHH
Q 005643 164 SDTKSMYKEVVLG-GDVWDLLDELMIYMGNPMQYYERGV---QFVRGVLLSGPPGTGKTLFA 221 (686)
Q Consensus 164 ~~~~~~f~dvvG~-~e~k~~L~elv~~l~~p~~~~~~g~---~~p~gvLL~GPPGTGKT~LA 221 (686)
..+..+|+|..+. +++.+.|.+. .+..|..++...+ ...+.+++.+|+|+|||+.+
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 3456678885443 3333333331 1334444443221 12467999999999999754
No 304
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.44 E-value=0.077 Score=56.80 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.5
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4567789999999999999999999865
No 305
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.39 E-value=0.052 Score=54.15 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=25.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC--CCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG--LPFVF 234 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g--~~fi~ 234 (686)
.+.-|.|.||||+||||+++.+++.++ .+++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 345688899999999999999999886 45543
No 306
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.32 E-value=0.28 Score=58.79 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~ 226 (686)
..-++|.||.|+|||++.|.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999953
No 307
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.14 E-value=0.15 Score=50.47 Aligned_cols=67 Identities=9% Similarity=0.034 Sum_probs=38.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCccccchhhh--HHHH------------HHHHHHHHHhcCCeEEEE
Q 005643 206 GVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAEFTDSEKS--GAAR------------INEMFSIARRNAPAFVFV 268 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~~~~~~~~--~~~~------------vr~lF~~Ak~~~P~ILfI 268 (686)
-.+++||.|+|||+.+-.++.. .|..++.+....-. .++. ..++ ..++++.+. ....+|+|
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~-R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~dvViI 107 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDN-RYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-EEMDVIAI 107 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCC-cchHHHHHhhcCCeeEEeecCCHHHHHHHHh-cCCCEEEE
Confidence 3458899999999988777654 47777766533211 1111 1111 123333333 23579999
Q ss_pred ccchhh
Q 005643 269 DEIDAI 274 (686)
Q Consensus 269 DEiDal 274 (686)
||+.-+
T Consensus 108 DEaQF~ 113 (214)
T 2j9r_A 108 DEVQFF 113 (214)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999987
No 308
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.08 E-value=0.15 Score=50.52 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=31.5
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCC---ccCceEEEEcCCCCcHHHHHH
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGV---QFVRGVLLSGPPGTGKTLFAR 222 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~---~~p~gvLL~GPPGTGKT~LAr 222 (686)
.+-.+|+++-..+++.+.+.+. .+..|..++...+ ...+.+++.+|+|+|||+.+-
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 4456788864444443433331 1333333333221 124679999999999998643
No 309
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.05 E-value=0.057 Score=53.57 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.4
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
+...-+.|.||+|+|||||.+++++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3455688999999999999999998764
No 310
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.02 E-value=0.063 Score=61.07 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC----CCeEEEeC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASG 237 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g----~~fi~is~ 237 (686)
.+.-|+|.|+||+|||++|++++..++ .+++.++.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 356789999999999999999999875 78887763
No 311
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.99 E-value=0.066 Score=51.42 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
.+|+||.|++|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 579999999999999999999874 54433
No 312
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.96 E-value=0.24 Score=56.34 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=23.4
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+++..-+.|.||+|+|||+|++.+++..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3445668999999999999999998754
No 313
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.85 E-value=0.054 Score=56.49 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
.+.-+.|.||+|+||||+++.+++..+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
No 314
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.84 E-value=0.11 Score=58.69 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=29.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhC----CCeEEEeCccc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESG----LPFVFASGAEF 240 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g----~~fi~is~s~~ 240 (686)
.+..+.|.|++|+||||+++++|+.++ ..+..+++..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 455688999999999999999999874 34545665544
No 315
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.84 E-value=0.4 Score=54.41 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
++..-+.|.||+|+|||||++.+++..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 345568999999999999999998754
No 316
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.74 E-value=0.065 Score=52.99 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCeEEEe
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESGLPFVFAS 236 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g~~fi~is 236 (686)
-.|-|+|..|||||++++.++. +|.|++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4688999999999999999997 898887544
No 317
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.69 E-value=0.071 Score=53.09 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
|+-|.|.|++|+|||++++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999883
No 318
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.40 E-value=0.084 Score=50.53 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.|++|+|||++++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999998763
No 319
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.39 E-value=0.13 Score=54.03 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.3
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
..|.-+.|.||+|+||||+++.++..++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466788999999999999999998765
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.37 E-value=0.081 Score=55.43 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=23.3
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+.+.-+.|.||+|+|||||++.|++..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445668899999999999999999865
No 321
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.34 E-value=0.035 Score=56.25 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.3
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.+.-|.|.|++|+||||+++.++..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999987
No 322
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.30 E-value=0.7 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.7
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...-++|.||.|+|||++.|.++.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3457899999999999999999864
No 323
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.28 E-value=0.16 Score=56.91 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGL 230 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (686)
+..|.|.|.+|+|||++++++|..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999874
No 324
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.24 E-value=0.27 Score=51.91 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||||+|||+|.+++++..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568899999999999999998754
No 325
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.19 E-value=0.13 Score=56.04 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
.-+++.||+|+||||+.+++++...
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3478999999999999999999764
No 326
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.18 E-value=0.056 Score=59.82 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=25.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHhCCCe
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKESGLPF 232 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~g~~f 232 (686)
.+.-|+|.|.||+|||++++.++..++.++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 356799999999999999999999876443
No 327
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.07 E-value=0.18 Score=59.30 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...+++.||+|+|||+++..++.+
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999977777544
No 328
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.05 E-value=0.13 Score=56.35 Aligned_cols=37 Identities=32% Similarity=0.346 Sum_probs=29.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeCcc
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASGAE 239 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~s~ 239 (686)
.|+.|++.|+||+|||+++..+|..+ |..+..+++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 46789999999999999999998765 56666666653
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.84 E-value=0.1 Score=54.50 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=23.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.+.-+.|.||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46678999999999999999999865
No 330
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.64 E-value=0.57 Score=47.21 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...|++.|.+|+|||+|..++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998643
No 331
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.64 E-value=0.41 Score=50.50 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.|+||+|||+++++++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35568899999999999999998754
No 332
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.63 E-value=0.11 Score=49.46 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEe
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFAS 236 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is 236 (686)
.+-+.|.|++|+|||+++..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3468899999999999999998764 45554444
No 333
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.53 E-value=0.5 Score=46.65 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
+..|+|.|++|+|||+|..++.+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 456999999999999999999763
No 334
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.45 E-value=0.54 Score=49.96 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=33.4
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCCc---cCceEEEEcCCCCcHHHHHHHH
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQ---FVRGVLLSGPPGTGKTLFARTL 224 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~---~p~gvLL~GPPGTGKT~LAral 224 (686)
...+|+++-..+++.+.|... -+..|..++...++ ..+.+++.+|+|+|||+.+-..
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 445799875455444444331 13334444433221 2467999999999999765443
No 335
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.38 E-value=1 Score=45.14 Aligned_cols=67 Identities=15% Similarity=0.030 Sum_probs=37.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH---HhCCCeEEEeCccccchhh-hHHHH------------HHHHHHHHHhcCCeEEEE
Q 005643 205 RGVLLSGPPGTGKTLFARTLAK---ESGLPFVFASGAEFTDSEK-SGAAR------------INEMFSIARRNAPAFVFV 268 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~---e~g~~fi~is~s~~~~~~~-~~~~~------------vr~lF~~Ak~~~P~ILfI 268 (686)
.-.+++||.|+|||+.+-..+. ..|..++.+....- ..++ ...++ ..++++.+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D-~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD-TRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC-CCC-----------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC-ccchHHHHhhcCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 4467889999999976655544 34666665552211 1111 00000 12344444 33579999
Q ss_pred ccchhh
Q 005643 269 DEIDAI 274 (686)
Q Consensus 269 DEiDal 274 (686)
||+.-+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999987
No 336
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.30 E-value=0.2 Score=49.46 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFA 235 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~i 235 (686)
+.-|.|.|++|+|||++++.++..+ |.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4457788999999999999998876 4565544
No 337
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.25 E-value=0.074 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+.+++-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999998753
No 338
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.25 E-value=0.083 Score=52.93 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+.+++-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34568899999999999999999754
No 339
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.25 E-value=0.081 Score=52.06 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
..-+.|.||.|+|||||++.+++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999875
No 340
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.22 E-value=0.39 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.++|+||||+|||+|++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999887653
No 341
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.20 E-value=0.084 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.7
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+...-+.|.||.|+|||||++.+++..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568899999999999999998753
No 342
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.19 E-value=0.13 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g 229 (686)
-.+|+||.|+|||++++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999988664
No 343
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.14 E-value=0.098 Score=52.67 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=22.8
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
++. .-+.|.||.|+|||||.+.+++-.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 678899999999999999999753
No 344
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.13 E-value=0.19 Score=57.59 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES----GLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~----g~~fi~is 236 (686)
.+++.||||||||+++..++..+ +.+++.+.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 57899999999999887776543 34454443
No 345
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.01 E-value=0.26 Score=46.42 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=22.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.....|++.|++|+|||+|+.++.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998753
No 346
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.91 E-value=0.2 Score=53.77 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=16.6
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTL 224 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAral 224 (686)
.+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 357999999999999854433
No 347
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.90 E-value=0.14 Score=51.49 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=24.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh---CCC
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES---GLP 231 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~---g~~ 231 (686)
.+.-|.|.|++|+|||++++.++..+ +.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 35668899999999999999998865 555
No 348
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=90.86 E-value=0.52 Score=54.70 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=16.9
Q ss_pred cCceEEEEcCCCCcHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFA 221 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LA 221 (686)
..+.+++.||+|+|||+.+
T Consensus 38 ~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIA 56 (720)
T ss_dssp GTCEEEEECCGGGCHHHHH
T ss_pred CCCcEEEEcCCccHHHHHH
Confidence 3678999999999999877
No 349
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.79 E-value=0.3 Score=51.77 Aligned_cols=25 Identities=44% Similarity=0.619 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..-|.|.|+||+|||+|..++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998753
No 350
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.66 E-value=0.51 Score=58.89 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+..-+-|+||+|+|||++++.+.+-.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 44558899999999999999997743
No 351
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.63 E-value=0.1 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.5
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+...-+.|.||.|+|||||.+.+++-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568899999999999999998753
No 352
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.61 E-value=0.13 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
.-+.|.|++|+|||+|.+.+++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 353
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.61 E-value=0.1 Score=53.20 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=21.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+++++-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999998753
No 354
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.55 E-value=0.13 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.-+.|.|++|+|||+|.+.+++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 355
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.54 E-value=0.44 Score=50.52 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=31.2
Q ss_pred CcccccceecCcccHHHHHHHHHHhCCchhhhhhCC---ccCceEEEEcCCCCcHHHHHHH
Q 005643 166 TKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGV---QFVRGVLLSGPPGTGKTLFART 223 (686)
Q Consensus 166 ~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~---~~p~gvLL~GPPGTGKT~LAra 223 (686)
...+|+++-..+.+.+.|.+. .+..|..++...+ ...+.+++.+|+|+|||+.+-.
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred hhcCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 345677765445444444331 1333333333221 1245699999999999987433
No 356
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.45 E-value=0.21 Score=49.79 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEEe
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES-------GLPFVFAS 236 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~-------g~~fi~is 236 (686)
+.-|.|.||+|+|||++++.++..+ |.+++...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 3457888999999999999998876 66665443
No 357
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.40 E-value=0.18 Score=53.73 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGL 230 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (686)
..-+.|.||+|+|||||++.+++....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 566899999999999999999998654
No 358
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.38 E-value=0.1 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+.+++-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999998754
No 359
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.38 E-value=0.22 Score=54.68 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~ 226 (686)
..+-.++.|+||||||++...++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 455678999999999999988764
No 360
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.36 E-value=0.45 Score=47.08 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeEEE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFVFA 235 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi~i 235 (686)
++-|.|.|++|+|||++++.++..++.+...+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 45688899999999999999999998754433
No 361
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.35 E-value=0.12 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.6
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...-+.|.||.|+|||||.+.+++-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999999974
No 362
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.33 E-value=0.13 Score=52.55 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.2
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
+...-+.|.||.|+|||||++.+++-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456889999999999999999975
No 363
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.27 E-value=0.46 Score=55.07 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=18.2
Q ss_pred ccCceEEEEcCCCCcHHHHHHH
Q 005643 202 QFVRGVLLSGPPGTGKTLFART 223 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAra 223 (686)
...+.+++.||+|+|||+.+-.
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHH
Confidence 3467899999999999998743
No 364
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.26 E-value=0.11 Score=51.86 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.7
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+...-+.|.||.|+|||||.+.+++..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999998754
No 365
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.25 E-value=0.11 Score=52.74 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+...-+.|.||.|+|||||.+.+++-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345568899999999999999999753
No 366
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.24 E-value=0.14 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.+.|.||+|+|||||.+.+++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 367
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.22 E-value=0.1 Score=51.69 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+.+++-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999998753
No 368
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.17 E-value=0.17 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (686)
.|++.|++|+|||+|++++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 369
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.16 E-value=0.17 Score=46.15 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
.-.|++.|++|+|||+|++++.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999874
No 370
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.13 E-value=0.11 Score=52.42 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||++.+++-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999998753
No 371
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.12 E-value=0.12 Score=52.83 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||++.+++-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44568899999999999999998753
No 372
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.09 E-value=0.11 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+.+++-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999754
No 373
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.06 E-value=0.12 Score=52.93 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=22.7
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+...-+.|.||.|+|||||++.+++..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568899999999999999999754
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.04 E-value=0.19 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...|+|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998754
No 375
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.92 E-value=0.12 Score=53.25 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||++++++-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34458899999999999999999754
No 376
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.87 E-value=0.12 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+.+++..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34558899999999999999999754
No 377
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.84 E-value=0.95 Score=45.52 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFAR 222 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (686)
+.+++.+|+|+|||+.+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 579999999999998643
No 378
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.79 E-value=0.12 Score=49.21 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+.+.|.|++|+|||+|++.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998875
No 379
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.78 E-value=0.13 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+.+++-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999998754
No 380
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.77 E-value=0.13 Score=52.24 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=22.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+.+++-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998753
No 381
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.74 E-value=0.15 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..-+.|.||+|+|||||.|+||+-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3458899999999999999999854
No 382
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=89.65 E-value=1.8 Score=46.09 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh----CCCeEEEeCc
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES----GLPFVFASGA 238 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~----g~~fi~is~s 238 (686)
++++.+|+|+|||+.+-+++... +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999888776554 5566666543
No 383
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.64 E-value=0.12 Score=52.82 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||++++++-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34568899999999999999999754
No 384
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.58 E-value=0.27 Score=47.64 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESG 229 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g 229 (686)
...+++.|++|+|||+|+.+++....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 385
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.50 E-value=0.13 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+.+++..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999854
No 386
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.47 E-value=0.67 Score=57.63 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=23.5
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+++..-+-|.||+|+|||+|++.+++..
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445668999999999999999998754
No 387
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.42 E-value=0.13 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||.|+|||||.+.+++..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999999754
No 388
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.37 E-value=0.19 Score=45.33 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (686)
.|++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 389
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.37 E-value=0.2 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
-.|++.|++|+|||+|..++.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 390
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.31 E-value=0.29 Score=55.23 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES---GLPFVFASG 237 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~ 237 (686)
+.-|+|.|+||+|||++|+.++..+ |.++..+++
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 5668999999999999999999875 456666653
No 391
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.30 E-value=0.17 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999854
No 392
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.30 E-value=0.14 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.5
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
....|++.|++|+|||+|..++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999753
No 393
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.29 E-value=0.17 Score=54.08 Aligned_cols=25 Identities=40% Similarity=0.297 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4457899999999999999999854
No 394
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.26 E-value=0.16 Score=54.18 Aligned_cols=26 Identities=38% Similarity=0.373 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||+|+|||||.|.+|+-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34457899999999999999999854
No 395
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=89.23 E-value=0.51 Score=54.63 Aligned_cols=18 Identities=44% Similarity=0.748 Sum_probs=16.0
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFAR 222 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAr 222 (686)
+.+++.||+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 579999999999999873
No 396
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.18 E-value=0.22 Score=45.12 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
+..|++.|++|+|||+|++++.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 397
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.17 E-value=0.76 Score=45.95 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
.+..|+|.|.||+|||+|..++.+.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3467999999999999999999653
No 398
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.17 E-value=0.62 Score=52.08 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=16.0
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTL 224 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAral 224 (686)
+.+|+.+|+|+|||+.+..-
T Consensus 41 ~d~lv~apTGsGKTl~~~lp 60 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIP 60 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHH
Confidence 46999999999999855433
No 399
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.17 E-value=0.34 Score=57.29 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (686)
-.++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999988777654
No 400
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.09 E-value=0.18 Score=54.20 Aligned_cols=26 Identities=35% Similarity=0.345 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||+|+|||||.|.+|+-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34457899999999999999999854
No 401
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.06 E-value=0.18 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..-+.|.||+|+|||||.|.||+-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4457899999999999999999854
No 402
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.04 E-value=0.68 Score=52.89 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.1
Q ss_pred CccCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 201 VQFVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 201 ~~~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|. +.|.||+|+|||+|.+++++.
T Consensus 43 l~lp~-iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 43 LALPA-IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCC-EECCCCTTSCHHHHHHHHHSC
T ss_pred ccCCe-EEEECCCCChHHHHHHHHhCC
Confidence 34455 889999999999999999875
No 403
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.02 E-value=0.22 Score=45.32 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
-.|++.|++|+|||+|.+++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 404
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.89 E-value=0.15 Score=54.23 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||+|+|||||.|.+|+-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34457899999999999999999854
No 405
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.87 E-value=0.23 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.-.|++.|++|+|||+|.+++.+..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3469999999999999999998753
No 406
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.81 E-value=0.18 Score=54.16 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+.|.||+|+|||||.|.||+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34458899999999999999999854
No 407
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.81 E-value=0.2 Score=49.16 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=26.0
Q ss_pred CCccCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 005643 200 GVQFVRGVLLSGPPGTGKTLFARTLAKESGL 230 (686)
Q Consensus 200 g~~~p~gvLL~GPPGTGKT~LAralA~e~g~ 230 (686)
+..+..-|+|+|.||+||+++|+.+.+..|.
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 3456778899999999999999999887753
No 408
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.79 E-value=0.38 Score=47.67 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=36.8
Q ss_pred eEEEEcCCCCcHHH-HHHHH--HHHhCCCeEEEeCcc--------ccchhhhH-----HHHHHHHHHHHHhcCCeEEEEc
Q 005643 206 GVLLSGPPGTGKTL-FARTL--AKESGLPFVFASGAE--------FTDSEKSG-----AARINEMFSIARRNAPAFVFVD 269 (686)
Q Consensus 206 gvLL~GPPGTGKT~-LAral--A~e~g~~fi~is~s~--------~~~~~~~~-----~~~vr~lF~~Ak~~~P~ILfID 269 (686)
-.+++||.|+|||+ |.+.+ +.+.+..++.+...- +.+..+.. .....+++... .....+|+||
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ID 108 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGID 108 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEe
Confidence 35788999999999 55555 234466665544221 00000000 00112333322 2346799999
Q ss_pred cchhhh
Q 005643 270 EIDAIA 275 (686)
Q Consensus 270 EiDal~ 275 (686)
|++-+.
T Consensus 109 EaQFf~ 114 (219)
T 3e2i_A 109 EVQFFD 114 (219)
T ss_dssp CGGGSC
T ss_pred chhcCC
Confidence 999873
No 409
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.73 E-value=0.22 Score=45.94 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
.-+.|.|+||+|||+|.+++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 410
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.73 E-value=0.23 Score=45.33 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
..|++.|++|+|||+|..++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999763
No 411
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.68 E-value=0.24 Score=45.72 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|.+++.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999764
No 412
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.66 E-value=0.24 Score=45.25 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
.-.|++.|++|+|||+|.+++.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999864
No 413
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.63 E-value=0.29 Score=48.76 Aligned_cols=32 Identities=28% Similarity=0.229 Sum_probs=25.2
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh----CCCeEE
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES----GLPFVF 234 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~----g~~fi~ 234 (686)
.+.-|.|.|++|+|||++++.++..+ |.+++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 35567888999999999999998865 445554
No 414
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.60 E-value=0.25 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999764
No 415
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.59 E-value=0.41 Score=49.95 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (686)
-++|.|+.|+||||+.+.+++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999754
No 416
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.59 E-value=0.19 Score=47.32 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~ 226 (686)
-|+|.|++|+|||+|++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 417
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.51 E-value=0.47 Score=47.23 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=26.6
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh--CCCeEEEe
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES--GLPFVFAS 236 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~--g~~fi~is 236 (686)
....+++.|.+|+|||+++..+|..+ |..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 35668899999999999999998765 55555555
No 418
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.44 E-value=0.24 Score=45.52 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~ 226 (686)
-.|++.|+||+|||+|++++.+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4699999999999999999965
No 419
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.43 E-value=0.18 Score=51.39 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..-+.|.||.|+|||||.+.+++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458899999999999999999865
No 420
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.41 E-value=0.26 Score=44.86 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|.+++.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 421
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.30 E-value=0.27 Score=44.73 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
..|++.|++|+|||+|.+++.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 422
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.28 E-value=0.33 Score=44.36 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|..++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999763
No 423
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.25 E-value=0.43 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.8
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...++++.||+|+|||++++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4557999999999999999999764
No 424
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.23 E-value=0.22 Score=45.38 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~ 226 (686)
-.|++.|++|+|||+|.+++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 425
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.23 E-value=0.27 Score=45.34 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~ 226 (686)
.+..|++.|++|+|||+|.+++.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 355699999999999999999975
No 426
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.18 E-value=0.22 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
.-|.|.|++|+|||+|.+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 427
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.16 E-value=0.29 Score=46.58 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.4
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
....|++.|++|+|||+|++++.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999999764
No 428
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.15 E-value=0.27 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|+|.|++|+|||+|++++.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999863
No 429
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.12 E-value=0.27 Score=48.61 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
+.-+.|.||.|+||||+++.+++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 445788999999999999999987
No 430
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=88.07 E-value=0.45 Score=47.89 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=24.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKESGLPF 232 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~g~~f 232 (686)
-+.|+|++|+|||++++.++...|.++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 477999999999999999998888775
No 431
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=88.06 E-value=0.64 Score=54.59 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...++|.||.|+|||++.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 467899999999999999999863
No 432
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.05 E-value=1.1 Score=48.44 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=31.1
Q ss_pred CCcccccceecCcccHHHHHHHHHHhCCchhhhhhCCc---cCceEEEEcCCCCcHHHH
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVQ---FVRGVLLSGPPGTGKTLF 220 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~l~~p~~~~~~g~~---~p~gvLL~GPPGTGKT~L 220 (686)
.+-.+|+++-..+.+.+.|... -+..|..++...++ ..+.+++.+|+|+|||+.
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CCcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 3446788874444444433321 13334333332221 247899999999999984
No 433
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.05 E-value=0.28 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (686)
.|++.|++|+|||+|.+++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 434
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.01 E-value=0.15 Score=54.30 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..-+.|.||+|+|||||.|.+|+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4457899999999999999999854
No 435
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.00 E-value=0.2 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.6
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...-+.|.||.|+|||||.+.+++.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3455889999999999999999875
No 436
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.99 E-value=0.27 Score=44.97 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~ 226 (686)
-|++.|+||+|||+|++++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999963
No 437
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.97 E-value=0.24 Score=45.10 Aligned_cols=21 Identities=48% Similarity=0.782 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~ 226 (686)
-|++.|+||+|||+|.+++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999953
No 438
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.88 E-value=0.28 Score=45.17 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
..|++.|++|+|||+|++++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 439
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.86 E-value=0.23 Score=53.66 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=22.7
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+...-+.|.||+|+|||||.+.||+-.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345568899999999999999999743
No 440
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.76 E-value=0.3 Score=44.96 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...|++.|++|+|||+|++++.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3569999999999999999998643
No 441
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=87.70 E-value=1.8 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLA 225 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA 225 (686)
...++|.||.|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4678999999999999999993
No 442
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.68 E-value=0.26 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~ 226 (686)
.-.|++.|++|+|||+|++++.+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999999975
No 443
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.63 E-value=1.8 Score=48.76 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=30.5
Q ss_pred CCcccccceecCcccHHHHHHHHHH--hCCchhhhhhCCc-----cCceEEEEcCCCCcHHHH
Q 005643 165 DTKSMYKEVVLGGDVWDLLDELMIY--MGNPMQYYERGVQ-----FVRGVLLSGPPGTGKTLF 220 (686)
Q Consensus 165 ~~~~~f~dvvG~~e~k~~L~elv~~--l~~p~~~~~~g~~-----~p~gvLL~GPPGTGKT~L 220 (686)
....+|+++.-...+...+.+.+.. +..+..++...++ ..+.+++.+|+|+|||+.
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 4556777775322233333333332 2223333332211 357899999999999984
No 444
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=87.63 E-value=0.49 Score=55.89 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH----hCCCeEEEe
Q 005643 206 GVLLSGPPGTGKTLFARTLAKE----SGLPFVFAS 236 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e----~g~~fi~is 236 (686)
-+++.||||||||+++..++.. .+..++.+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a 411 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 411 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 4789999999999987666443 244555444
No 445
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.57 E-value=0.3 Score=45.78 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..|++.|++|+|||+|+.++++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 446
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.56 E-value=0.31 Score=45.40 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+-.|++.|++|+|||+|+.++.+..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998643
No 447
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=87.54 E-value=4 Score=44.75 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCCeEEEeCc
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES--------GLPFVFASGA 238 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~--------g~~fi~is~s 238 (686)
+.+++.+|+|+|||+.+-..+.+. +..++.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 469999999999998866665433 5555555543
No 448
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.50 E-value=0.3 Score=45.03 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|.+++.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 449
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.49 E-value=0.3 Score=45.82 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 450
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=87.49 E-value=1.9 Score=45.40 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (686)
-|.+.|++|+|||+|..++.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999873
No 451
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.49 E-value=0.37 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
.-.|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 452
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.43 E-value=0.32 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 453
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.40 E-value=0.32 Score=45.10 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356999999999999999999864
No 454
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.35 E-value=0.29 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
.-|.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 455
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.35 E-value=0.32 Score=45.85 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|+|.|++|+|||+|++++.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356999999999999999999874
No 456
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.34 E-value=0.31 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+-|.|.|++|+|||+.++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999998865
No 457
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.26 E-value=0.36 Score=50.60 Aligned_cols=29 Identities=41% Similarity=0.549 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
.+|++|.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 479999999999999999999875 54443
No 458
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.23 E-value=0.32 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999764
No 459
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.15 E-value=0.33 Score=45.43 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...|+|.|++|+|||+|++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3469999999999999999887653
No 460
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.12 E-value=0.37 Score=44.68 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
-.|++.|++|+|||+|.+++.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 461
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.10 E-value=0.3 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~ 226 (686)
...|++.|++|+|||+|++++.+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999964
No 462
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=87.09 E-value=0.34 Score=50.67 Aligned_cols=29 Identities=41% Similarity=0.517 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLPFV 233 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~fi 233 (686)
.+|+||.|++|+|||++|-++.. .|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 57999999999999999988864 465554
No 463
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.02 E-value=0.38 Score=45.53 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999874
No 464
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.98 E-value=0.4 Score=46.57 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..-++|.|.+|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568888999999999999998875
No 465
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=86.92 E-value=0.79 Score=46.25 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (686)
.|.|.|.||+|||+|..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999764
No 466
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.92 E-value=0.34 Score=53.54 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=22.8
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
+...-+.|.||.|+|||+|+|.+++..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 344568999999999999999999853
No 467
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.70 E-value=0.37 Score=44.82 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 468
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.68 E-value=0.58 Score=45.70 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCCeEEEe
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES--GLPFVFAS 236 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~--g~~fi~is 236 (686)
+=|.|-|+.|+||||.++.++..+ |.+++...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 346788999999999999999877 55665543
No 469
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.64 E-value=0.38 Score=44.42 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.6
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
....|++.|++|+|||+|..++.+.
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999999764
No 470
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.61 E-value=0.37 Score=45.28 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999864
No 471
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=86.60 E-value=0.41 Score=49.59 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.-+.|.||+|+|||+|.+++++..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357899999999999999998753
No 472
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=86.58 E-value=3.6 Score=45.19 Aligned_cols=34 Identities=24% Similarity=0.480 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCCeEEEeCc
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES--------GLPFVFASGA 238 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~--------g~~fi~is~s 238 (686)
+.+++.+|+|+|||+.+-..+... +..++.+...
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 469999999999998866555433 5555555543
No 473
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.48 E-value=0.41 Score=44.20 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 005643 206 GVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e~ 228 (686)
-.+|+||.|+|||++..|+.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997543
No 474
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.48 E-value=0.36 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
.-|++.|+||+|||+|.+++.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 475
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.44 E-value=0.25 Score=47.25 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.0
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...-+.|.|++|+|||+|.+++++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999998653
No 476
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.42 E-value=0.38 Score=45.15 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999999999874
No 477
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.35 E-value=0.49 Score=44.92 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.7
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~ 226 (686)
....|++.|++|+|||+|++++..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999964
No 478
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.34 E-value=0.52 Score=50.02 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKESGLP 231 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~g~~ 231 (686)
..-+.|.||+|+|||+|.+.+++.....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3458899999999999999999986543
No 479
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=86.34 E-value=1.2 Score=48.54 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCcHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFA 221 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LA 221 (686)
+.+|+.||+|+|||+.+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 57999999999999875
No 480
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.33 E-value=0.39 Score=45.26 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.-.|+|.|++|+|||+|++++.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3469999999999999999998754
No 481
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=86.30 E-value=0.59 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
.-+.|.||+|+|||+|.++++ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999999 53
No 482
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.26 E-value=0.35 Score=45.08 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 005643 206 GVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 206 gvLL~GPPGTGKT~LAralA~e 227 (686)
.|++.|++|+|||+|..++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999763
No 483
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.17 E-value=0.34 Score=51.85 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.1
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...-+-|.||+|+|||||.|++++-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34558899999999999999999754
No 484
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.08 E-value=0.41 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|+.++.+.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999764
No 485
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.07 E-value=0.41 Score=45.19 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
--|++.|++|+|||+|++.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45999999999999999999764
No 486
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.06 E-value=0.41 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999874
No 487
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.04 E-value=0.41 Score=44.41 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.9
Q ss_pred cCceEEEEcCCCCcHHHHHHHHHH
Q 005643 203 FVRGVLLSGPPGTGKTLFARTLAK 226 (686)
Q Consensus 203 ~p~gvLL~GPPGTGKT~LAralA~ 226 (686)
....|++.|++|+|||+|..++.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999863
No 488
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=85.97 E-value=0.33 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
..|++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 489
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=85.90 E-value=0.65 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
..-++|.||||+|||+|++.+|+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4569999999999999999998753
No 490
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.90 E-value=0.36 Score=48.88 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
..|.|.|+||+|||+|.+++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 491
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=85.89 E-value=0.42 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
--|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999888764
No 492
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.88 E-value=0.4 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|++++.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356999999999999999999864
No 493
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=85.87 E-value=3.3 Score=50.69 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCeEEEeC
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKES---GLPFVFASG 237 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e~---g~~fi~is~ 237 (686)
+.+|++||.|+|||+.+-..+..+ +...+++..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 579999999999998765543332 444444443
No 494
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=85.81 E-value=0.51 Score=43.62 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|.+++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
No 495
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=85.80 E-value=0.51 Score=49.98 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=29.0
Q ss_pred ccCceEEEEcCCCCcHHHHHHHHHHH---hCCCeEEEeCcc
Q 005643 202 QFVRGVLLSGPPGTGKTLFARTLAKE---SGLPFVFASGAE 239 (686)
Q Consensus 202 ~~p~gvLL~GPPGTGKT~LAralA~e---~g~~fi~is~s~ 239 (686)
+..+-++..|.+|+|||++|-++|.. .|..++.+++.-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34455667799999999999998764 388888887653
No 496
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.78 E-value=0.42 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 005643 205 RGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 205 ~gvLL~GPPGTGKT~LAralA~e 227 (686)
.-+.|.||+|+|||||.+++++.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 35779999999999999999984
No 497
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.77 E-value=0.42 Score=44.32 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|+|.|++|+|||+|++++...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356999999999999999999853
No 498
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.76 E-value=0.43 Score=44.90 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|.+++.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999864
No 499
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.70 E-value=0.45 Score=45.18 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKES 228 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e~ 228 (686)
...|++.|++|+|||+|++++.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4569999999999999999998753
No 500
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=85.70 E-value=0.44 Score=44.78 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 005643 204 VRGVLLSGPPGTGKTLFARTLAKE 227 (686)
Q Consensus 204 p~gvLL~GPPGTGKT~LAralA~e 227 (686)
...|++.|++|+|||+|.+++.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999763
Done!