Query 005645
Match_columns 686
No_of_seqs 318 out of 1613
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:24:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aql_A Poly(A) polymerase; tra 100.0 1.2E-62 4E-67 531.2 22.1 279 51-338 3-289 (415)
2 1miw_A TRNA CCA-adding enzyme; 100.0 8.2E-55 2.8E-59 468.2 21.5 221 68-300 7-229 (404)
3 3h38_A TRNA nucleotidyl transf 100.0 8.3E-54 2.8E-58 465.6 29.2 226 61-299 11-251 (441)
4 1ou5_A TRNA CCA-adding enzyme, 100.0 4.5E-54 1.5E-58 468.3 20.0 225 65-300 55-288 (448)
5 1vfg_A A-adding enzyme, poly A 100.0 1.5E-52 5E-57 447.9 22.0 217 72-300 2-227 (390)
6 4e8j_A Lincosamide resistance 92.5 0.15 5E-06 49.2 5.6 55 65-119 7-65 (161)
7 2fcl_A Hypothetical protein TM 85.8 1.3 4.3E-05 42.5 6.4 55 63-118 12-73 (169)
8 2la3_A Uncharacterized protein 84.8 0.83 2.9E-05 45.1 4.7 42 67-108 19-69 (191)
9 3nyb_A Poly(A) RNA polymerase 22.4 2.4E+02 0.0082 29.1 8.4 27 80-108 59-85 (323)
10 1ylq_A Putative nucleotidyltra 22.0 1.1E+02 0.0039 25.8 5.0 37 69-107 4-43 (96)
No 1
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=100.00 E-value=1.2e-62 Score=531.16 Aligned_cols=279 Identities=29% Similarity=0.458 Sum_probs=242.7
Q ss_pred eeccccccCcCcCCCChhHHHHHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhccCcccccccCeE
Q 005645 51 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPIC 130 (686)
Q Consensus 51 ~~~~~~~~gI~~~~ip~~a~~VL~~L~~~G~eAYLVGG~VRDLLLGr~PkD~DIvT~A~peei~k~F~~~~ivGrrF~i~ 130 (686)
+++++++|||++..+|+.+..|++.|+++||++|+|||||||+|||++|+||||+|+|+|+++++.|+++..+|++|+++
T Consensus 3 ~~~~~~~h~i~~~~~~~~~~~v~~~l~~~G~~~ylVGG~VRD~LLg~~~~D~Di~t~a~p~~~~~~f~~~~~~g~~f~~~ 82 (415)
T 3aql_A 3 TVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLA 82 (415)
T ss_dssp CEECTTTSCCCCGGGSCSCHHHHHHHHHTTCCEEEETHHHHHHHHSSCCSCCEEEESSCHHHHHHHTTTSCCCCCSSSCC
T ss_pred eEecHHhCCcChHhCCHHHHHHHHHHHHCCCeEEEECHHHHHHHcCCCCCCEEEEcCCCHHHHHHHhhhCeEecccCCEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred EEEECCEEEEEecccccccccC--CC------ceeeecCCCCCCchhhhhhhhhhccCccccccccccCCCCeEeeCcCc
Q 005645 131 RVHIKGSVIEVSSFETVAKHGE--GK------ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANG 202 (686)
Q Consensus 131 ~V~~~G~~IEVaTfRte~~~~~--~~------~~V~fs~~~~gt~eeDL~~~eDa~RRDFTINALAyd~~~g~LiDyfGG 202 (686)
+|.+++..|||+|||++.+... +. .......+.+|++++|+ .||||||||||||+.++.|+|||||
T Consensus 83 ~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~tl~eDl------~RRDFTINAla~~~~~~~l~D~~gG 156 (415)
T 3aql_A 83 HVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDA------QRRDFTINSLYYSVADFTVRDYVGG 156 (415)
T ss_dssp EEESSSCEEEEEECCC-----------------------CCCCCHHHHH------TTSSBSGGGCEEETTTCCEECSSSH
T ss_pred EEEECCcEEEEeeecccccccccccccccccCCCcccccccCCCHHHHH------hcCCccceeEEEeCCCCeeeCCCCC
Confidence 9999999999999999865320 00 11122334567888886 7999999999999988999999999
Q ss_pred HHHHhcCceeecccCcccccccHHhHHHHHHHHHHhCCCCCHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHhCCCHHHHH
Q 005645 203 ISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 282 (686)
Q Consensus 203 leDLk~riIR~Vg~p~~rF~EDPlRILRAiRFAaRLGF~Id~eT~~aIr~~a~lL~~Is~eRI~~EL~KLL~~~~~~~~L 282 (686)
++||++|+||++++|..+|.|||+|||||+|||+++||.|+++|..+|++++..|..+|.+|++.|+.|||.++++..+|
T Consensus 157 ~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~T~~ai~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l 236 (415)
T 3aql_A 157 MKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETY 236 (415)
T ss_dssp HHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHHHHTHHHHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCChHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchhhhhhhhhhhhhccCcCCCchhHHHHHHHHhHHhhhhCCCCCchhh
Q 005645 283 CLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTL 338 (686)
Q Consensus 283 ~lL~e~GLL~~LfPela~~~~qq~~~h~~t~d~~Ll~lL~~ld~ll~~~rp~~~~l 338 (686)
++|+++|+|..+||++..+..+...+|.++++.|++. .+++.+..+.+..+.+
T Consensus 237 ~~l~~~GlL~~~lPe~~~i~~~~q~~h~~~v~~h~L~---~~d~~i~~~~~~~~~L 289 (415)
T 3aql_A 237 KLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLK---NTDTRIHNDMRVNPAF 289 (415)
T ss_dssp HHHHHTTCSTTTCHHHHTTCCSSSCCHHHHHHHHHHH---HHHHHHHTTCCCCHHH
T ss_pred HHHHHcCChHHhchhHHHHhccCCcchHHHHHHHHHH---HHHHHHhcCCCCCHHH
Confidence 9999999999999999988765444555666666554 4677676666655433
No 2
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=100.00 E-value=8.2e-55 Score=468.16 Aligned_cols=221 Identities=30% Similarity=0.420 Sum_probs=202.1
Q ss_pred hHHHHHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhccCcccccccCeEEEEECCEEEEEeccccc
Q 005645 68 PSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETV 147 (686)
Q Consensus 68 ~a~~VL~~L~~~G~eAYLVGG~VRDLLLGr~PkD~DIvT~A~peei~k~F~~~~ivGrrF~i~~V~~~G~~IEVaTfRte 147 (686)
.+..|++.|+++||++|+|||||||+|||++|+|+||+|++.|+++.+.|+++..+|.+|++++|.++|..|||+|||++
T Consensus 7 ~~~~i~~~l~~~g~~~y~VGG~VRD~lLg~~~~D~Di~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~~~~ev~t~R~e 86 (404)
T 1miw_A 7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFPKTIDVGSKHGTVVVVHKGKAYEVTTFKTD 86 (404)
T ss_dssp HHHHHHHHHHHTTCCEEEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCSSEEEEEGGGTEEEEEETTEEEEEEECEEC
T ss_pred HHHHHHHHHHhCCCeEEEECHHHHHHHcCCCCCCEEEEeCCCHHHHHHHhhhhcccCcCCCeEEEEECCeEEEEeeeccc
Confidence 47889999999999999999999999999999999999999999999999887778999999999999999999999998
Q ss_pred ccccCC--CceeeecCCCCCCchhhhhhhhhhccCccccccccccCCCCeEeeCcCcHHHHhcCceeecccCcccccccH
Q 005645 148 AKHGEG--KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 225 (686)
Q Consensus 148 ~~~~~~--~~~V~fs~~~~gt~eeDL~~~eDa~RRDFTINALAyd~~~g~LiDyfGGleDLk~riIR~Vg~p~~rF~EDP 225 (686)
.+..++ +..|.|+ +++++|+ .||||||||||||+ +|.|+|||||++||++|+||++++|..+|.|||
T Consensus 87 ~~~~~~~~p~~v~~~----~~l~~Dl------~RRDfTiNAla~~~-~g~l~D~~~G~~Dl~~~~ir~~~~p~~~f~eDP 155 (404)
T 1miw_A 87 GDYEDYRRPESVTFV----RSLEEDL------KRRDFTMNAIAMDE-YGTIIDPFGGREAIRRRIIRTVGEAEKRFREDA 155 (404)
T ss_dssp C---------CCEEC----SCHHHHH------HTSSBSGGGCEECT-TCCEECTTCHHHHHHHTEECBSSCHHHHHHHCT
T ss_pred CCCCCCcCCcccccC----CcHHHHH------HhCCCCcchheeCC-CCCEeCCCCCHHHHhCCeeeecCChHhhHHhhH
Confidence 765443 2245553 4667886 79999999999998 689999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhCCCCCHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhhh
Q 005645 226 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 300 (686)
Q Consensus 226 lRILRAiRFAaRLGF~Id~eT~~aIr~~a~lL~~Is~eRI~~EL~KLL~~~~~~~~L~lL~e~GLL~~LfPela~ 300 (686)
+|||||+|||++|||.|+++|..+|++++..+..+|.||++.|+.|||.++++..++++|.++|++.. +|++..
T Consensus 156 lRiLRa~Rfaa~lgf~i~~~T~~ai~~~~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~-lPe~~~ 229 (404)
T 1miw_A 156 LRMMRAVRFVSELGFALAPDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY-LPGLAG 229 (404)
T ss_dssp HHHHHHHHHHHHHCCEECHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTS-STTCSS
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhh-Ccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 698764
No 3
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00 E-value=8.3e-54 Score=465.62 Aligned_cols=226 Identities=24% Similarity=0.350 Sum_probs=203.6
Q ss_pred CcCCCChhHHHHHHHH----HHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhcc----CcccccccCeEEE
Q 005645 61 TRAMIPQPSWVVLKIL----KSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR----SEIIGRRFPICRV 132 (686)
Q Consensus 61 ~~~~ip~~a~~VL~~L----~~~G~eAYLVGG~VRDLLLGr~PkD~DIvT~A~peei~k~F~~----~~ivGrrF~i~~V 132 (686)
....+|+.++.+|+.| +++||++|+|||||||+|||++|+|+||+|+++|.++.+.+.. ...+|.+|++++|
T Consensus 11 l~~~lp~~~~~~l~~l~~~~~~~G~~aylVGG~VRD~LLg~~~~D~Di~t~~~~~~~~~~~~~~~~~~~~~g~~~gt~~v 90 (441)
T 3h38_A 11 LVERVDPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASL 90 (441)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHTCCCCCEEEEESSCHHHHHHHHHTTSCEEEECCSSTTEEEE
T ss_pred HHHhCCHHHHHHHHHHHHHHHHcCCeEEEEcHHHHHHHCCCCCCCeeEEeCCCHHHHHHHHHHHcCCEeccCCcCcEEEE
Confidence 4467899999999999 5899999999999999999999999999999999888876632 2346999999999
Q ss_pred EE-CCEEEEEecccccccccCCC-ceeeecCCCCCCchhhhhhhhhhccCccccccccccCC---CCeEeeCcCcHHHHh
Q 005645 133 HI-KGSVIEVSSFETVAKHGEGK-ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPF---LNKIYDYANGISDLR 207 (686)
Q Consensus 133 ~~-~G~~IEVaTfRte~~~~~~~-~~V~fs~~~~gt~eeDL~~~eDa~RRDFTINALAyd~~---~g~LiDyfGGleDLk 207 (686)
.+ +|..|||+|||+++|..++. +.|. ++++++|+ .||||||||||||+. .|.|+|||||++||+
T Consensus 91 ~~~~g~~~ev~t~R~e~~~~~~~~p~V~-----~~~l~eDl------~RRDFTINAla~~~~~~~~g~liD~~gG~~DL~ 159 (441)
T 3h38_A 91 FLKGGLRIDIATARLEYYESPAKLPDVE-----MSTIKKDL------YRRDFTINAMAIKLNPKDFGLLIDFFGGYRDLK 159 (441)
T ss_dssp EETTSCEEEEEECCEECCSSSSSCCEES-----CCCHHHHH------HTSSBGGGSCEEECSGGGTTEEECSSSHHHHHH
T ss_pred EEeCCeEEEEecccccccCCCCCCCccC-----CCCHHHHH------HhccchhhhhhcccCCCCCCeEeCCCCCHHHHh
Confidence 99 88999999999998766553 3332 35778886 799999999999875 489999999999999
Q ss_pred cCceeecccCcccccccHHhHHHHHHHHHHhCCCCCHHHHHHHHHhh--hhhcCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 005645 208 CLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLS--SSIERLDKSRIMMELNYMLSYGAAESSICLL 285 (686)
Q Consensus 208 ~riIR~Vg~p~~rF~EDPlRILRAiRFAaRLGF~Id~eT~~aIr~~a--~lL~~Is~eRI~~EL~KLL~~~~~~~~L~lL 285 (686)
+|+||+|+++ +|.|||+|||||+||+++|||+|+++|..+|+.++ ..+..+|+|||+.|+.|||.++++..++++|
T Consensus 160 ~~~iR~v~~~--~F~eDplRiLRa~Rfaa~lgf~i~~~t~~~i~~~~~~~~l~~is~eRi~~El~kll~~~~~~~~l~~l 237 (441)
T 3h38_A 160 EGVIRVLHTL--SFVDDPTRILRAIRFEQRFDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRM 237 (441)
T ss_dssp TTEECBSSTT--HHHHCTTHHHHHHHHHHHTTCEECHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCEEEECCCC--ChhhCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhhchhccCCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999975 89999999999999999999999999999999875 6899999999999999999999999999999
Q ss_pred HHcCCchhhhhhhh
Q 005645 286 RRYNLLKILLPFHA 299 (686)
Q Consensus 286 ~e~GLL~~LfPela 299 (686)
.++|+|..+||++.
T Consensus 238 ~~~glL~~i~Pel~ 251 (441)
T 3h38_A 238 AQFDVIKHLFPKTY 251 (441)
T ss_dssp HHTTHHHHHSTTCC
T ss_pred HHcCChHHhCcccc
Confidence 99999999999876
No 4
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=4.5e-54 Score=468.26 Aligned_cols=225 Identities=24% Similarity=0.319 Sum_probs=200.5
Q ss_pred CChhHHHHHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhccC----cc-cccccCeEEEEECCEEE
Q 005645 65 IPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS----EI-IGRRFPICRVHIKGSVI 139 (686)
Q Consensus 65 ip~~a~~VL~~L~~~G~eAYLVGG~VRDLLLGr~PkD~DIvT~A~peei~k~F~~~----~i-vGrrF~i~~V~~~G~~I 139 (686)
+++.+..|++.|+++||++|+|||||||+|||++|+|+||+|+++|+++.+.|++. .. .|.+|+++++.++|..+
T Consensus 55 ~~~~~~~i~~~l~~~g~~~ylVGG~VRD~LLg~~~~D~Di~~~~~p~~~~~~~~~~g~~~~~~~g~~~gt~~v~~~~~~~ 134 (448)
T 1ou5_A 55 FTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 134 (448)
T ss_dssp SCTTHHHHHHHHHHTTCCEEEESTTTHHHHHTSCCSSCEEEESSCHHHHHHHHTTTTCCBCCCCCTTCCCEEECTTTTCE
T ss_pred HHHHHHHHHHHHHhcCCeEEEeCHHHHHHHcCCCCCCEEEEeCCCHHHHHHHHHHcCCccccCcCcccceEEEEECCEEE
Confidence 77799999999999999999999999999999999999999999999999999863 22 58999999999999999
Q ss_pred EEecccccccccCCCceeeecCCCCCCchhhhhhhhhhccCccccccccccCCCCeEeeCcCcHHHHhcCceeecccCcc
Q 005645 140 EVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 219 (686)
Q Consensus 140 EVaTfRte~~~~~~~~~V~fs~~~~gt~eeDL~~~eDa~RRDFTINALAyd~~~g~LiDyfGGleDLk~riIR~Vg~p~~ 219 (686)
||+|||++.+...+.+.|.|. .++++|+ .||||||||||||+ +|.|+|||||++||++|+||+|++|..
T Consensus 135 ev~t~R~~~~~~~r~~~v~~~----~~l~eDl------~RRDFTINAla~~~-~g~l~D~~gG~~DL~~~~IR~v~d~~~ 203 (448)
T 1ou5_A 135 EITTLRIDVTTDGRHAEVEFT----TDWQKDA------ERRDLTINSMFLGF-DGTLFDYFNGYEDLKNKKVRFVGHAKQ 203 (448)
T ss_dssp EEEECCS------------SS----CCSSCCG------GGSSBGGGSCEECS-SCBEECSSSHHHHTTTTCCCBSSTTTT
T ss_pred EEEeecccccccCCCCccccC----ccHHHHH------HHcCCChhheeECC-CCCEeCCCCCHHHHhCCeEEecCChHH
Confidence 999999987754444455553 2457776 79999999999998 799999999999999999999999999
Q ss_pred cccccHHhHHHHHHHHHHh--CC-CCCHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhh-h
Q 005645 220 SFTEDCARILRGLRIAARL--GL-SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL-L 295 (686)
Q Consensus 220 rF~EDPlRILRAiRFAaRL--GF-~Id~eT~~aIr~~a~lL~~Is~eRI~~EL~KLL~~~~~~~~L~lL~e~GLL~~L-f 295 (686)
+|.|||+|||||+|||++| || .|+++|..+|++++..|..+|+|||+.|+.|||.++++..++++|.++|+|..+ |
T Consensus 204 rF~EDPLRiLRa~RFaarl~~gf~~I~~~T~~ai~~~~~~L~~is~ERi~~El~kiL~~~~~~~~l~~L~~~GlL~~i~l 283 (448)
T 1ou5_A 204 RIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGL 283 (448)
T ss_dssp TSSSCTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTC
T ss_pred hhhhCHHHHHHHHHHHHHcCcCCCCcCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHCCCceEecC
Confidence 9999999999999999999 96 999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhh
Q 005645 296 PFHAA 300 (686)
Q Consensus 296 Pela~ 300 (686)
|++..
T Consensus 284 Pe~~~ 288 (448)
T 1ou5_A 284 PANAS 288 (448)
T ss_dssp CCCSC
T ss_pred cchhh
Confidence 98864
No 5
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=1.5e-52 Score=447.90 Aligned_cols=217 Identities=28% Similarity=0.401 Sum_probs=190.9
Q ss_pred HHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCH----HHHHHHhccCcccccccCeEEEEECCEEEEEeccccc
Q 005645 72 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL----KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETV 147 (686)
Q Consensus 72 VL~~L~~~G~eAYLVGG~VRDLLLGr~PkD~DIvT~A~p----eei~k~F~~~~ivGrrF~i~~V~~~G~~IEVaTfRte 147 (686)
+.+.++++||++|+|||||||+|||++|+|+||+|++++ +++.+.|+....+|.+|++++|.++|..|||+|||++
T Consensus 2 ~~~~~~~~g~~~y~VGG~VRD~llg~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~~~~e~~~~R~e 81 (390)
T 1vfg_A 2 VGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRE 81 (390)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHHTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSC
T ss_pred hHHHHHHcCCeEEEEChHHHHHHcCCCCCCEEEEEeCChHHHHHHHHHHcCCceeecCCCcEEEEEECCEEEEEeccCcc
Confidence 567889999999999999999999999999999999996 5566677665567999999999999999999999999
Q ss_pred ccccCCCceeeecCCCCCCchhhhhhhhhhccCccccccccccCC---CCeEeeCcCcHHHHhcCceeecccCccccccc
Q 005645 148 AKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPF---LNKIYDYANGISDLRCLKLRTLIPAYLSFTED 224 (686)
Q Consensus 148 ~~~~~~~~~V~fs~~~~gt~eeDL~~~eDa~RRDFTINALAyd~~---~g~LiDyfGGleDLk~riIR~Vg~p~~rF~ED 224 (686)
.|..++..+. ...+++++|+ .||||||||||||+. .|.|+|||||++||++|+||++++ .+|.||
T Consensus 82 ~~~~~~~~p~----v~~~~l~~Dl------~RRDfTiNAla~~~~~~~~g~l~D~~~G~~DL~~~~ir~v~~--~~F~eD 149 (390)
T 1vfg_A 82 TYPRPGAYPK----VEPASLKEDL------IRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIRVLHP--VSFIED 149 (390)
T ss_dssp C-------------CCCCCHHHHH------HTSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTTEECBSST--THHHHC
T ss_pred cCCCCCCCCc----cCCCCHHHHH------hhCCCchhheeecccCCCCCeEEeCCCCHHHHhCCeeEeCCc--cchhhC
Confidence 8765543221 2245778886 799999999999865 389999999999999999999996 599999
Q ss_pred HHhHHHHHHHHHHhCCCCCHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhhh
Q 005645 225 CARILRGLRIAARLGLSFCKDIDTAMHSLSS--SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 300 (686)
Q Consensus 225 PlRILRAiRFAaRLGF~Id~eT~~aIr~~a~--lL~~Is~eRI~~EL~KLL~~~~~~~~L~lL~e~GLL~~LfPela~ 300 (686)
|+|||||+|||+++||.|+++|..+|++++. .+..+|.||++.|+.|||.++++..++++|+++|+|..+||++..
T Consensus 150 PlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~~~~~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~~lPe~~~ 227 (390)
T 1vfg_A 150 PVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQW 227 (390)
T ss_dssp TTHHHHHHHHHHHHTCEECHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhhhh
Confidence 9999999999999999999999999999855 899999999999999999999999999999999999999998864
No 6
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A*
Probab=92.52 E-value=0.15 Score=49.25 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=45.6
Q ss_pred CChhHHHHHHHHHHCCCcEEEEchhHHHHHhCC---CCCCeEEEeCC-CHHHHHHHhcc
Q 005645 65 IPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRR---VPKDFDVITTA-NLKQIRRQFHR 119 (686)
Q Consensus 65 ip~~a~~VL~~L~~~G~eAYLVGG~VRDLLLGr---~PkD~DIvT~A-~peei~k~F~~ 119 (686)
..+.+..+++.|...|.+.+|+||+-=|+++|+ ...|+||.+.+ +...+.+.++.
T Consensus 7 ~~~d~~evl~~l~~~~v~~~i~GGwAvD~~~G~~tR~H~DiDi~v~~~d~~~l~~~L~~ 65 (161)
T 4e8j_A 7 TEKELFYILDLFEHMKVTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQHTQKVIQKLED 65 (161)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEHHHHHHHHHTSCCSCCSEEEEEEEGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcEEEEcHhhhhHhcCCCCCcCCCeEEeecHHhHHHHHHHHHH
Confidence 346688999999999999999999999999994 57899998854 56677777653
No 7
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=85.78 E-value=1.3 Score=42.51 Aligned_cols=55 Identities=20% Similarity=0.177 Sum_probs=36.0
Q ss_pred CCCChhHHH----HHHHHHHCCCcEEEEchhHHHHHhCCC--CCCeEEEeCC-CHHHHHHHhc
Q 005645 63 AMIPQPSWV----VLKILKSQGFQAYLVGGCVRDLLLRRV--PKDFDVITTA-NLKQIRRQFH 118 (686)
Q Consensus 63 ~~ip~~a~~----VL~~L~~~G~eAYLVGG~VRDLLLGr~--PkD~DIvT~A-~peei~k~F~ 118 (686)
.+|++.... +++.|++.|.+-.|||||.= .+-|.+ |+|+||.|+. +.+.+.+.|.
T Consensus 12 ~~~~~~~~~~L~~i~~~L~~~~V~~~l~Gs~Al-~~~G~~~~~~DIDi~i~~~da~~~~~~L~ 73 (169)
T 2fcl_A 12 HMIRPEYLRVLRXIYDRLXNEXVNWVVTGSLSF-ALQGVPVEVHDIDIQTDEEGAYEIERIFS 73 (169)
T ss_dssp -CCCHHHHHHHHHHHHHHTTSSCCEEEEHHHHH-HHTTCCCCCCSEEEEECHHHHHHHHHHTG
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCEEEeHHHHH-HHcCCCCCCCccEEEecccCHHHHHHHHH
Confidence 356655544 55567788877777777654 777765 8999998854 2455555554
No 8
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae}
Probab=84.81 E-value=0.83 Score=45.08 Aligned_cols=42 Identities=26% Similarity=0.525 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHCCCc-EEEEchhHHHHH----hCCC----CCCeEEEeCC
Q 005645 67 QPSWVVLKILKSQGFQ-AYLVGGCVRDLL----LRRV----PKDFDVITTA 108 (686)
Q Consensus 67 ~~a~~VL~~L~~~G~e-AYLVGG~VRDLL----LGr~----PkD~DIvT~A 108 (686)
+....+|+.+.+.|.. .||++||||..+ -|++ .+||||+---
T Consensus 19 ~~~m~iL~~~~~L~Lpd~~laAG~vrn~VWn~L~g~~~~~~i~DiDviYFD 69 (191)
T 2la3_A 19 PDMMAILTIIRDLGLKDSWLAAGSVRNFIWNLLSDKSPFDHETDIDVIFFD 69 (191)
T ss_dssp HHHHHHHHHHHHTCCSSCEEETHHHHHHHHGGGTTSCTTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHcCCchhhhhhhhhHhhHHHHhcCCCCCCCCCceeEEEEC
Confidence 4566788899999975 999999999754 5654 4999998643
No 9
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=22.39 E-value=2.4e+02 Score=29.13 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=22.5
Q ss_pred CCcEEEEchhHHHHHhCCCCCCeEEEeCC
Q 005645 80 GFQAYLVGGCVRDLLLRRVPKDFDVITTA 108 (686)
Q Consensus 80 G~eAYLVGG~VRDLLLGr~PkD~DIvT~A 108 (686)
+.+++++|-+++. ++.+..|+|+++..
T Consensus 59 ~~~v~~fGS~~~g--~~~~~SDiDl~v~~ 85 (323)
T 3nyb_A 59 DADLHVFGSYSTD--LYLPGSDIDCVVTS 85 (323)
T ss_dssp TCCEEEESTTTTT--CCCTTSCEEEEECS
T ss_pred CCEEEEeCccccC--CCCCCCCceEEEec
Confidence 6799999999998 55667999998754
No 10
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=21.98 E-value=1.1e+02 Score=25.75 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=25.9
Q ss_pred HHHHHHHHHH-CC-CcEEEEchhHHHHHhCCCC-CCeEEEeC
Q 005645 69 SWVVLKILKS-QG-FQAYLVGGCVRDLLLRRVP-KDFDVITT 107 (686)
Q Consensus 69 a~~VL~~L~~-~G-~eAYLVGG~VRDLLLGr~P-kD~DIvT~ 107 (686)
+..+.+.+++ .| ..+|+.|-..|.- ..+. .|+||++-
T Consensus 4 l~~i~~~l~~~~~~~~v~LFGS~ArG~--~~~~~SDiDllV~ 43 (96)
T 1ylq_A 4 MKEIKEITKKDVQDAEIYLYGSVVEGD--YSIGLSDIDVAIV 43 (96)
T ss_dssp HHHHHHHHHHHCTTCEEEEESHHHHCC--SSSCCCSEEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEEeCC--CCCCCCceEEEEE
Confidence 3455666665 45 5899999999974 3345 79999754
Done!